BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039636
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 86/163 (52%), Gaps = 49/163 (30%)
Query: 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------ 42
MGCYVVGSAGSKEK++ LK KF FDDAFNYKEE DL ALKR
Sbjct: 179 MGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKML 238
Query: 43 ----------GQNARCSASKHETPRENCSMWNDLT--------------------YSKFL 72
G+ A C EN ++L+ YSKFL
Sbjct: 239 DAVLVNMNMHGRIAVCGMISQYN-LENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFL 297
Query: 73 DVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115
+ VLP IREGKI YVED+ +GLE AP AL+GLF G+NVGKQ +
Sbjct: 298 EFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVV 340
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 86/162 (53%), Gaps = 47/162 (29%)
Query: 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------ 42
+GCYVVGSAGSKEK++ LK+KF FD+AFNYKEEQDL ALKR
Sbjct: 177 LGCYVVGSAGSKEKVDLLKSKFGFDEAFNYKEEQDLSAALKRYFPDGIDIYFENVGGKML 236
Query: 43 ----------GQNARCSASKHETPRENCSMWNDL-------------------TYSKFLD 73
G+ A C + + N Y K+L+
Sbjct: 237 DAVLVNMKLYGRIAVCGMISQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYPKYLE 296
Query: 74 VVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115
+V+P I+ GK+VYVED+ GLE+AP AL+GLFSGRN+GKQ +
Sbjct: 297 MVIPQIKAGKVVYVEDVAHGLESAPTALVGLFSGRNIGKQVV 338
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 63/160 (39%), Gaps = 50/160 (31%)
Query: 2 GCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------- 42
GC VVG+ GS EK+ L+ K FD FNYK + L LK+
Sbjct: 165 GCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSN 223
Query: 43 ---------GQNARCSASK------------------HETPRENCSM---WNDLTYSKFL 72
G+ A C A ++ R + W K L
Sbjct: 224 TVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKAL 283
Query: 73 DVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGK 112
+L + EGKI Y E I+EG EN PAA +G+ G N+GK
Sbjct: 284 KDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGK 323
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 63/160 (39%), Gaps = 50/160 (31%)
Query: 2 GCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------- 42
GC VVG+ GS EK+ L+ K FD FNYK + L LK+
Sbjct: 186 GCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSN 244
Query: 43 ---------GQNARCSASK------------------HETPRENCSM---WNDLTYSKFL 72
G+ A C A ++ R + W K L
Sbjct: 245 TVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKAL 304
Query: 73 DVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGK 112
+L + EGKI Y E I+EG EN PAA +G+ G N+GK
Sbjct: 305 KDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGK 344
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 65/160 (40%), Gaps = 50/160 (31%)
Query: 2 GCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------- 42
GC VVG+AGS EKI LK + FD AFNYK L ALK+
Sbjct: 170 GCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLN 228
Query: 43 ---------GQNARCSASK--------HETPRENCSMWNDLTYSKFL------DV----- 74
G+ A C A P ++ L F+ DV
Sbjct: 229 TVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKAL 288
Query: 75 --VLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGK 112
++ + EGKI Y E + +G EN PAA + + +G N+GK
Sbjct: 289 RDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGK 328
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 79 IREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117
+ EGK+ EDIVEGLE P LL LFSG N GK L +
Sbjct: 298 LAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV 336
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 2 GCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR 42
GC VVG AG EK L + FD A +YK E DL LKR
Sbjct: 174 GCRVVGIAGGAEKCRFLVEELGFDGAIDYKNE-DLAAGLKR 213
>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And 15-Keto-Pge2
pdb|2ZB7|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph And Nicotinamide
pdb|2ZB8|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And Indomethacin
Length = 357
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 80 REGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115
+EGK+ E ++ GLEN AA + +G N+GKQ +
Sbjct: 314 KEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIV 349
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEE 33
+GC VVG G+ EK L ++ FD A NYK++
Sbjct: 184 LGCSRVVGICGTHEKCILLTSELGFDAAINYKKD 217
>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
18beta-Glycyrrhetinic Acid
pdb|2VNA|A Chain A, Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (
Zadh1)
pdb|2W98|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
pdb|2W98|B Chain B, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
Length = 357
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 80 REGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115
+EGK+ E ++ GLEN AA + +G N+GKQ +
Sbjct: 309 KEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIV 344
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEE 33
+GC VVG G+ EK L ++ FD A NYK++
Sbjct: 179 LGCSRVVGICGTHEKCILLTSELGFDAAINYKKD 212
>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph
Length = 353
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 70 KFLDVVLPL---IREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQ 113
KF +L L +EGK+ E + +GLEN A + +G NVGKQ
Sbjct: 297 KFEPGILQLSQWFKEGKLKVKETMAKGLENMGVAFQSMMTGGNVGKQ 343
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYK 31
+GC VVG G++EK L ++ FD A NYK
Sbjct: 180 LGCSRVVGICGTQEKCLFLTSELGFDAAVNYK 211
>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent
Oxidoreductase From Mus Musculus At 2.10 A Resolution
Length = 363
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 70 KFLDVVLPL---IREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQ 113
KF +L L +EGK+ E + +GLEN A +G NVGKQ
Sbjct: 307 KFEPGILQLSQWFKEGKLKVKETVAKGLENXGVAFQSXXTGGNVGKQ 353
Score = 28.9 bits (63), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYK 31
+GC VVG G++EK L ++ FD A NYK
Sbjct: 190 LGCSRVVGICGTQEKCLFLTSELGFDAAVNYK 221
>pdb|1I38|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With
Dihydrotestosterone
pdb|1XNN|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With (3a-Alpha-,4-
Alpha
7-Alpha-,7a-Alpha-)-3a,4,7,7a-Tetrahydro-2-(4-Nitro-
1-Naphthalenyl)-4,7-Ethano-1h-Isoindole-1,3(2h)-Dione
Length = 260
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 159 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 205
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 206 SVQPIARE 213
>pdb|1I37|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Dihydrotestosterone
pdb|2IHQ|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domian Complex With An N-Aryl-
Hydroxybicyclohydantoin
pdb|2NW4|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Bms-564929
pdb|3G0W|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With An N-Aryl-Oxazolidin 2-Imine
Inhibitor
Length = 260
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 159 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 205
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 206 SVQPIARE 213
>pdb|2AX6|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With Hydroxyflutamide
pdb|2AX7|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With S-1
Length = 256
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 155 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 201
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 202 SVQPIARE 209
>pdb|1XJ7|A Chain A, Complex Androgen Receptor Lbd And Rac3 Peptide
pdb|2Q7I|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And An Ar 20-30 Peptide
pdb|2Q7J|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And A Tif2 Box 3 Coactivator
Peptide 740-753
Length = 257
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 156 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 202
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 203 SVQPIARE 210
>pdb|1T73|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxff Motif
pdb|1T74|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxlf Motif
pdb|1T76|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxvw Motif
pdb|1T79|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlw Motif
pdb|1T7F|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Lxxll Motif
pdb|1T7M|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxyf Motif
pdb|1T7R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlf Motif
pdb|1T7T|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With 5-Alpha Dihydrotestosterone
Length = 269
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 168 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 214
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 215 SVQPIARE 222
>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With The
Ligand Metribolone (R1881)
Length = 263
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 162 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 208
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 209 SVQPIARE 216
>pdb|2AX8|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain W741l Mutant In Complex With S-1
Length = 256
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 155 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 201
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 202 SVQPIARE 209
>pdb|2AX9|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With R-3
pdb|2AXA|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With S-1
pdb|2YLO|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLP|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLQ|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|3ZQT|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|4HLW|A Chain A, Targeting The Binding Function 3 (bf3) Site Of The Human
Androgen Receptor Through Virtual Screening. 2.
Development Of 2-((2- Phenoxyethyl)
Thio)-1h-benzoimidazole Derivatives
Length = 256
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 155 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 201
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 202 SVQPIARE 209
>pdb|1T5Z|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain (Lbd) With Dht And A Peptide Derived From Its
Physiological Coactivator Ara70
pdb|1T63|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived From Its
Physiological Coactivator Grip1 Nr Box3
pdb|1T65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived Form Its
Physiological Coactivator Grip1 Nr Box 2 Bound In A Non-
Helical Conformation
pdb|2PIO|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIP|L Chain L, Androgen Receptor Lbd With Small Molecule
pdb|2PIQ|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIR|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIT|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIU|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIV|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIW|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIX|A Chain A, Ar Lbd With Small Molecule
pdb|2PKL|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2QPY|A Chain A, Ar Lbd With Small Molecule
Length = 251
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 150 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 196
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 197 SVQPIARE 204
>pdb|3L3X|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The First Motif Of Steroid Receptor
Coactivator 3
pdb|3L3Z|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The Third Motif Of Steroid Receptor
Coactivator 3
Length = 250
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 150 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 196
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 197 SVQPIARE 204
>pdb|2Z4J|A Chain A, Crystal Structure Of Ar Lbd With Shp Peptide Nr Box 2
Length = 248
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 148 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 194
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 195 SVQPIARE 202
>pdb|2Q7K|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And An Ar 20-30
Peptide
pdb|2Q7L|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And A Tif2 Box3
Coactivator Peptide 740-753
Length = 257
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 156 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 202
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 203 SVQPIARE 210
>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Testosterone
pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Dihydrotestosterone
pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Tetrahydrogestrinone
pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
Ligand-Binding Domain In Complex With Em-5744
pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 1
Length = 266
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 165 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 211
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 212 SVQPIARE 219
>pdb|2OZ7|A Chain A, Crystal Structure Of The Human Androgen Receptor T877a
Mutant Ligand- Binding Domain With Cyproterone Acetate
Length = 249
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 148 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 194
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 195 SVQPIARE 202
>pdb|3RLJ|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-22
Length = 247
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 148 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 194
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 195 SVQPIARE 202
>pdb|1XOW|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With An Androgen Receptor Nh2-
Terminal Peptide, Ar20-30, And R1881
pdb|1XQ3|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With R1881
pdb|2AO6|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With Tif2(Iii) 740-753 Peptide And
R1881
pdb|3B5R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-31
pdb|3B65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-24
pdb|3B66|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-21
pdb|3B67|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-23
pdb|3B68|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-4
pdb|2YHD|A Chain A, Human Androgen Receptor In Complex With Af2 Small Molecule
Inhibitor
pdb|3V4A|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 2
Length = 249
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 148 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 194
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 195 SVQPIARE 202
>pdb|2HVC|A Chain A, The Crystal Structure Of Ligand-Binding Domain (Lbd) Of
Human Androgen Receptor In Complex With A Selective
Modulator Lgd2226
Length = 250
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 150 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 196
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 197 SVQPIARE 204
>pdb|3RLL|A Chain A, Crystal Structure Of The T877a Androgen Receptor Ligand
Binding Domain In Complex With
(S)-N-(4-Cyano-3-(Trifluoromethyl)phenyl)-3-(4-
Cyanonaphthalen-1-Yloxy)-2-Hydroxy-2-Methylpropanamide
Length = 247
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 148 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 194
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 195 SVQPIARE 202
>pdb|1GS4|A Chain A, Structural Basis For The Glucocorticoid Response In A
Mutant Human Androgen Receptor (Arccr) Derived From An
Androgen-Independent Prostate Cancer
Length = 248
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 149 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 195
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 196 SVQPIARE 203
>pdb|1Z95|A Chain A, Crystal Structure Of The Androgen Receptor Ligand-Binding
Domain W741l Mutant Complex With R-Bicalutamide
Length = 246
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 15 IERLKNKFAFDDA-FNYKEEQDLVTALKRGQNARCSASKHETPRENCSMWNDLTYSKFLD 73
++ LKN+ FD+ NY +E D + A KR CS ++ +K LD
Sbjct: 147 VDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQL-------------TKLLD 193
Query: 74 VVLPLIRE 81
V P+ RE
Sbjct: 194 SVQPIARE 201
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 60 CSMWNDLTYSKFLDVV----------LPLIREGKIVYVEDIVEGLENAPAALLGLF 105
C W D+ YSK++ ++ +IR+ K++ + D +EN P+AL F
Sbjct: 170 CQKWFDVNYSKWVCILDADDEIVNYDKSIIRKTKVLAIRD-TSTMENVPSALTKNF 224
>pdb|3T7H|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
pdb|3T7H|B Chain B, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 60 CSMWNDLTYSKFLDVVLP----------LIREGKIVYVEDIVEGLENAPAALLGLF 105
C W D+ YSK++ ++ +IR+ K++ + D +EN P+AL F
Sbjct: 170 CQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRD-TSTMENVPSALTKNF 224
>pdb|3T7G|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
pdb|3T7G|B Chain B, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 60 CSMWNDLTYSKFLDVVLP----------LIREGKIVYVEDIVEGLENAPAALLGLF 105
C W D+ YSK++ ++ +IR+ K++ + D +EN P+AL F
Sbjct: 170 CQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRD-TSTMENVPSALTKNF 224
>pdb|4GSJ|A Chain A, Crystal Structure Of Atg7 Ntd K14a F16a D18a Mutant
Length = 291
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 60 CSMWNDLTYSKFLDVVLP----------LIREGKIVYVEDIVEGLENAPAALLGLF 105
C W D+ YSK++ ++ +IR+ K++ + D +EN P+AL F
Sbjct: 170 CQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRD-TSTMENVPSALTKNF 224
>pdb|3B7K|A Chain A, Human Acyl-Coenzyme A Thioesterase 12
pdb|3B7K|B Chain B, Human Acyl-Coenzyme A Thioesterase 12
pdb|3B7K|C Chain C, Human Acyl-Coenzyme A Thioesterase 12
Length = 333
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 85 VYVEDIVEGLENAPAALLGLFSGRNVGKQALDLDSCLVVLEPD 127
V V+D++ G+E + F + VGK+ + L ++ E D
Sbjct: 108 VMVQDMLTGIEKLVSVAFSTFVAKPVGKEKIHLKPVTLLTEQD 150
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 60 CSMWNDLTYSKFLDVVLP----------LIREGKIVYVEDIVEGLENAPAALLGLF 105
C W D+ YSK++ ++ +IR+ K++ + D +EN P+AL F
Sbjct: 171 CQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRD-TSTMENVPSALTKNF 225
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 60 CSMWNDLTYSKFLDVVLP----------LIREGKIVYVEDIVEGLENAPAALLGLF 105
C W D+ YSK++ ++ +IR+ K++ + D +EN P+AL F
Sbjct: 170 CQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRD-TSTMENVPSALTKNF 224
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 60 CSMWNDLTYSKFLDVVLP----------LIREGKIVYVEDIVEGLENAPAALLGLF 105
C W D+ YSK++ ++ +IR+ K++ + D +EN P+AL F
Sbjct: 171 CQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRD-TSTMENVPSALTKNF 225
>pdb|1VDY|A Chain A, Nmr Structure Of The Hypothetical Enth-Vhs Domain
At3g16270 From Arabidopsis Thaliana
pdb|2DCP|A Chain A, Fully Automated Nmr Structure Determination Of The
Enth-Vhs Domain At3g16270 From Arabidopsis Thaliana
Length = 140
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 4 YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKRGQNARCSASKHET 55
Y VG +GS+ + E +N A + F+YK D + + R +A HET
Sbjct: 75 YAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETA--HET 124
>pdb|3T7F|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 60 CSMWNDLTYSKFLDVVLP----------LIREGKIVYVEDIVEGLENAPAALLGLF 105
C W D+ YSK++ ++ +IR+ K++ + D EN P+AL F
Sbjct: 170 CQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRD-TSTXENVPSALTKNF 224
>pdb|3RUJ|A Chain A, Crystal Structure Of N-Terminal Region Of Yeast Atg7
Length = 296
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 60 CSMWNDLTYSKFLDVVLP----------LIREGKIVYVEDIVEGLENAPAALLGLF 105
C W D+ YSK++ ++ +IR+ K++ + D EN P+AL F
Sbjct: 170 CQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRD-TSTXENVPSALTKNF 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,976,902
Number of Sequences: 62578
Number of extensions: 157655
Number of successful extensions: 449
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 56
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)