Query 039636
Match_columns 129
No_of_seqs 112 out of 1116
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 11:38:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2130 Putative NADP-dependen 99.8 1.4E-18 3.1E-23 123.1 11.3 118 1-119 174-340 (340)
2 COG1064 AdhP Zn-dependent alco 99.7 9.8E-16 2.1E-20 111.3 12.4 116 1-118 189-338 (339)
3 KOG1196 Predicted NAD-dependen 99.7 4.9E-16 1.1E-20 110.0 9.8 119 1-119 177-342 (343)
4 KOG1197 Predicted quinone oxid 99.6 1.2E-14 2.7E-19 101.3 11.0 119 1-121 170-334 (336)
5 PLN03154 putative allyl alcoho 99.5 1.2E-13 2.7E-18 101.5 11.9 119 1-119 182-347 (348)
6 COG0604 Qor NADPH:quinone redu 99.5 1.4E-13 3.1E-18 100.5 11.8 115 1-117 166-326 (326)
7 KOG0023 Alcohol dehydrogenase, 99.5 4.4E-13 9.5E-18 96.1 11.5 120 1-121 204-358 (360)
8 cd08291 ETR_like_1 2-enoyl thi 99.4 3.5E-12 7.5E-17 92.6 11.7 113 1-116 167-324 (324)
9 PRK09880 L-idonate 5-dehydroge 99.4 7.3E-12 1.6E-16 91.8 10.5 115 1-117 192-343 (343)
10 cd08294 leukotriene_B4_DH_like 99.4 2E-11 4.4E-16 88.3 11.8 115 1-117 167-329 (329)
11 cd08295 double_bond_reductase_ 99.3 3.2E-11 7E-16 88.0 12.1 116 1-117 175-338 (338)
12 KOG1198 Zinc-binding oxidoredu 99.3 1.9E-11 4.2E-16 89.9 10.8 115 2-118 182-346 (347)
13 PLN02178 cinnamyl-alcohol dehy 99.3 3.9E-11 8.4E-16 89.2 11.6 115 1-117 201-348 (375)
14 TIGR02825 B4_12hDH leukotriene 99.3 4.8E-11 1E-15 86.7 11.3 115 1-116 162-325 (325)
15 TIGR02822 adh_fam_2 zinc-bindi 99.3 3.5E-11 7.5E-16 87.9 10.2 113 1-115 188-328 (329)
16 cd08239 THR_DH_like L-threonin 99.3 6.4E-11 1.4E-15 86.4 10.6 113 1-117 186-339 (339)
17 cd08293 PTGR2 Prostaglandin re 99.3 1.5E-10 3.2E-15 84.6 12.1 116 1-117 178-345 (345)
18 cd08281 liver_ADH_like1 Zinc-d 99.3 8.1E-11 1.7E-15 87.2 10.4 113 1-115 214-371 (371)
19 PLN02514 cinnamyl-alcohol dehy 99.2 3.2E-10 7E-15 83.6 12.1 119 1-120 203-353 (357)
20 PLN02586 probable cinnamyl alc 99.2 2.4E-10 5.2E-15 84.5 11.0 114 1-117 206-353 (360)
21 COG1062 AdhC Zn-dependent alco 99.2 1.1E-10 2.4E-15 84.5 8.3 113 2-116 209-365 (366)
22 KOG1202 Animal-type fatty acid 99.2 1.8E-10 3.8E-15 94.0 9.9 120 1-121 1576-1745(2376)
23 TIGR03451 mycoS_dep_FDH mycoth 99.2 5.8E-10 1.3E-14 82.2 11.3 113 1-116 199-357 (358)
24 PRK10309 galactitol-1-phosphat 99.2 4.8E-10 1E-14 82.2 10.5 114 1-117 183-346 (347)
25 TIGR03201 dearomat_had 6-hydro 99.2 5.7E-10 1.2E-14 82.0 10.9 114 1-116 189-348 (349)
26 cd08233 butanediol_DH_like (2R 99.1 5E-10 1.1E-14 82.1 9.9 114 1-116 195-351 (351)
27 cd08296 CAD_like Cinnamyl alco 99.1 1.1E-09 2.5E-14 79.8 11.4 113 1-116 186-333 (333)
28 PLN02827 Alcohol dehydrogenase 99.1 1.8E-09 4E-14 80.3 11.2 116 1-118 216-377 (378)
29 cd08300 alcohol_DH_class_III c 99.0 7.3E-09 1.6E-13 76.7 11.0 114 1-116 209-368 (368)
30 KOG0022 Alcohol dehydrogenase, 99.0 3.2E-09 6.9E-14 76.4 8.6 114 1-116 215-374 (375)
31 cd08297 CAD3 Cinnamyl alcohol 99.0 1.3E-08 2.8E-13 74.2 12.1 114 1-117 189-341 (341)
32 cd08292 ETR_like_2 2-enoyl thi 99.0 1.4E-08 3E-13 73.4 11.1 114 1-116 163-324 (324)
33 cd08238 sorbose_phosphate_red 99.0 1.3E-08 2.9E-13 76.4 11.2 113 4-118 205-369 (410)
34 PRK10083 putative oxidoreducta 99.0 1.1E-08 2.3E-13 74.6 10.5 117 1-119 184-339 (339)
35 TIGR02818 adh_III_F_hyde S-(hy 99.0 1.3E-08 2.8E-13 75.5 10.9 115 1-117 208-368 (368)
36 KOG0024 Sorbitol dehydrogenase 98.9 1.1E-08 2.5E-13 73.8 9.9 117 1-118 192-353 (354)
37 PF13602 ADH_zinc_N_2: Zinc-bi 98.9 2.3E-09 5E-14 67.9 5.6 48 68-115 80-127 (127)
38 cd08261 Zn_ADH7 Alcohol dehydr 98.9 3.3E-08 7.2E-13 72.0 12.0 115 1-117 182-337 (337)
39 PLN02740 Alcohol dehydrogenase 98.9 2.1E-08 4.5E-13 74.7 11.0 115 1-117 221-381 (381)
40 cd08244 MDR_enoyl_red Possible 98.9 3.9E-08 8.4E-13 70.9 11.6 114 1-116 166-323 (324)
41 cd08285 NADP_ADH NADP(H)-depen 98.9 2.6E-08 5.6E-13 73.1 10.8 115 1-117 189-351 (351)
42 cd08246 crotonyl_coA_red croto 98.9 4.4E-08 9.5E-13 73.0 12.1 114 1-116 217-392 (393)
43 cd05283 CAD1 Cinnamyl alcohol 98.9 2.3E-08 5E-13 73.0 10.4 113 1-116 192-337 (337)
44 TIGR01751 crot-CoA-red crotony 98.9 4.9E-08 1.1E-12 73.0 12.2 116 1-118 213-388 (398)
45 PRK09422 ethanol-active dehydr 98.9 3.2E-08 7E-13 72.0 10.9 115 1-117 186-336 (338)
46 PRK10754 quinone oxidoreductas 98.9 9.5E-08 2.1E-12 69.3 12.6 114 1-116 164-326 (327)
47 cd05282 ETR_like 2-enoyl thioe 98.9 4.3E-08 9.4E-13 70.7 10.7 114 1-116 162-323 (323)
48 cd05284 arabinose_DH_like D-ar 98.8 7.1E-08 1.5E-12 70.3 10.5 111 2-116 191-339 (340)
49 cd08240 6_hydroxyhexanoate_dh_ 98.8 1E-07 2.2E-12 69.8 11.4 114 1-116 198-349 (350)
50 cd08230 glucose_DH Glucose deh 98.8 4.8E-08 1E-12 71.9 9.4 112 1-117 195-355 (355)
51 PTZ00354 alcohol dehydrogenase 98.8 1.1E-07 2.3E-12 68.8 11.1 118 1-120 164-331 (334)
52 PRK05396 tdh L-threonine 3-deh 98.8 7.4E-08 1.6E-12 70.4 10.0 115 1-118 186-341 (341)
53 cd08277 liver_alcohol_DH_like 98.8 1.2E-07 2.6E-12 70.1 11.0 114 1-116 207-365 (365)
54 cd08276 MDR7 Medium chain dehy 98.8 2E-07 4.3E-12 67.4 11.6 116 1-117 183-336 (336)
55 TIGR00692 tdh L-threonine 3-de 98.8 1.1E-07 2.5E-12 69.4 10.4 114 1-117 184-340 (340)
56 cd05288 PGDH Prostaglandin deh 98.8 1E-07 2.2E-12 69.0 9.7 114 1-115 169-329 (329)
57 cd08231 MDR_TM0436_like Hypoth 98.8 1.2E-07 2.5E-12 69.9 10.1 113 1-116 200-360 (361)
58 cd08301 alcohol_DH_plants Plan 98.7 1.8E-07 3.9E-12 69.2 10.9 112 1-115 210-368 (369)
59 cd05286 QOR2 Quinone oxidoredu 98.7 3E-07 6.6E-12 65.6 11.5 114 1-116 160-319 (320)
60 cd08263 Zn_ADH10 Alcohol dehyd 98.7 2.1E-07 4.5E-12 68.8 10.8 114 1-116 210-367 (367)
61 cd08274 MDR9 Medium chain dehy 98.7 2.9E-07 6.4E-12 67.2 11.3 112 1-116 201-349 (350)
62 cd05280 MDR_yhdh_yhfp Yhdh and 98.7 5.4E-07 1.2E-11 65.0 11.7 114 1-117 170-325 (325)
63 cd08235 iditol_2_DH_like L-idi 98.7 2.5E-07 5.4E-12 67.5 10.1 113 1-116 188-343 (343)
64 cd08269 Zn_ADH9 Alcohol dehydr 98.7 3.9E-07 8.5E-12 65.4 10.9 113 1-115 152-311 (312)
65 PF00107 ADH_zinc_N: Zinc-bind 98.7 1E-07 2.2E-12 60.5 6.9 40 1-42 13-52 (130)
66 cd08254 hydroxyacyl_CoA_DH 6-h 98.7 4.7E-07 1E-11 65.6 11.3 114 1-117 188-338 (338)
67 cd08243 quinone_oxidoreductase 98.7 6.3E-07 1.4E-11 64.3 11.6 112 1-115 166-319 (320)
68 cd08249 enoyl_reductase_like e 98.7 5.4E-07 1.2E-11 65.9 11.4 114 1-117 178-339 (339)
69 TIGR02817 adh_fam_1 zinc-bindi 98.7 4.8E-07 1E-11 65.8 11.0 112 2-116 174-334 (336)
70 TIGR01202 bchC 2-desacetyl-2-h 98.7 3.3E-07 7.1E-12 66.4 10.1 115 1-116 167-308 (308)
71 cd08251 polyketide_synthase po 98.7 5.4E-07 1.2E-11 64.0 11.0 113 1-115 144-303 (303)
72 cd05281 TDH Threonine dehydrog 98.7 3.4E-07 7.4E-12 66.9 10.0 112 1-116 186-340 (341)
73 TIGR02823 oxido_YhdH putative 98.7 5.9E-07 1.3E-11 65.0 11.0 114 1-117 169-323 (323)
74 COG1063 Tdh Threonine dehydrog 98.6 2.5E-07 5.3E-12 68.4 9.1 115 1-116 191-349 (350)
75 cd08290 ETR 2-enoyl thioester 98.6 6.6E-07 1.4E-11 65.2 11.0 115 1-117 170-341 (341)
76 cd08256 Zn_ADH2 Alcohol dehydr 98.6 4.7E-07 1E-11 66.4 10.2 113 1-115 197-350 (350)
77 cd08260 Zn_ADH6 Alcohol dehydr 98.6 7.8E-07 1.7E-11 65.0 11.3 115 1-116 188-344 (345)
78 cd08287 FDH_like_ADH3 formalde 98.6 4.7E-07 1E-11 66.1 10.0 113 1-116 191-344 (345)
79 cd08289 MDR_yhfp_like Yhfp put 98.6 4.9E-07 1.1E-11 65.4 9.8 114 1-117 170-326 (326)
80 cd08266 Zn_ADH_like1 Alcohol d 98.6 1.3E-06 2.8E-11 63.1 11.9 114 1-116 190-341 (342)
81 cd08250 Mgc45594_like Mgc45594 98.6 1.1E-06 2.3E-11 63.7 11.5 114 1-116 163-329 (329)
82 cd05278 FDH_like Formaldehyde 98.6 1E-06 2.2E-11 64.3 11.4 114 1-116 190-346 (347)
83 cd08253 zeta_crystallin Zeta-c 98.6 1.1E-06 2.4E-11 62.9 11.3 114 1-116 168-324 (325)
84 cd08288 MDR_yhdh Yhdh putative 98.6 1.1E-06 2.4E-11 63.4 11.2 114 1-117 170-324 (324)
85 cd08232 idonate-5-DH L-idonate 98.6 1.1E-06 2.4E-11 64.1 11.1 115 1-117 188-339 (339)
86 cd08270 MDR4 Medium chain dehy 98.6 1.7E-06 3.7E-11 61.9 11.9 116 1-117 156-305 (305)
87 cd08286 FDH_like_ADH2 formalde 98.6 9.6E-07 2.1E-11 64.6 10.3 115 1-117 189-345 (345)
88 cd08284 FDH_like_2 Glutathione 98.5 1.5E-06 3.2E-11 63.5 10.7 112 1-116 190-343 (344)
89 cd08278 benzyl_alcohol_DH Benz 98.5 1.6E-06 3.5E-11 64.1 10.8 113 1-116 209-365 (365)
90 cd05285 sorbitol_DH Sorbitol d 98.5 1.3E-06 2.8E-11 63.9 10.0 113 1-115 185-341 (343)
91 cd08265 Zn_ADH3 Alcohol dehydr 98.5 1.8E-06 4E-11 64.3 10.9 112 1-115 226-383 (384)
92 cd08237 ribitol-5-phosphate_DH 98.5 1.3E-06 2.9E-11 64.1 9.6 114 3-118 190-340 (341)
93 cd08259 Zn_ADH5 Alcohol dehydr 98.5 3E-06 6.6E-11 61.2 11.1 112 1-116 186-332 (332)
94 cd08262 Zn_ADH8 Alcohol dehydr 98.5 1.5E-06 3.3E-11 63.4 9.6 114 1-116 184-341 (341)
95 PRK13771 putative alcohol dehy 98.5 2.2E-06 4.7E-11 62.3 10.0 115 1-117 186-333 (334)
96 cd05195 enoyl_red enoyl reduct 98.5 3.4E-06 7.4E-11 59.2 10.5 113 1-115 132-293 (293)
97 TIGR02824 quinone_pig3 putativ 98.5 4.6E-06 9.9E-11 59.8 11.2 115 1-117 163-325 (325)
98 cd08252 AL_MDR Arginate lyase 98.5 5.4E-06 1.2E-10 60.2 11.6 113 1-116 173-336 (336)
99 cd08279 Zn_ADH_class_III Class 98.4 3.5E-06 7.5E-11 62.3 10.5 112 1-114 205-362 (363)
100 cd08242 MDR_like Medium chain 98.4 2.6E-06 5.6E-11 61.6 9.4 114 1-116 178-318 (319)
101 cd08245 CAD Cinnamyl alcohol d 98.4 6.2E-06 1.3E-10 59.8 11.1 112 1-115 185-330 (330)
102 smart00829 PKS_ER Enoylreducta 98.4 6.5E-06 1.4E-10 57.9 10.5 113 1-115 128-288 (288)
103 cd05276 p53_inducible_oxidored 98.4 7.2E-06 1.6E-10 58.5 10.6 113 1-115 163-323 (323)
104 cd08271 MDR5 Medium chain dehy 98.4 1.3E-05 2.7E-10 57.7 11.8 114 1-117 165-325 (325)
105 cd08236 sugar_DH NAD(P)-depend 98.4 5.7E-06 1.2E-10 60.4 9.9 112 1-115 182-343 (343)
106 cd08241 QOR1 Quinone oxidoredu 98.4 7.6E-06 1.6E-10 58.5 10.4 114 1-116 163-323 (323)
107 cd08234 threonine_DH_like L-th 98.4 8.7E-06 1.9E-10 59.1 10.7 112 1-115 182-333 (334)
108 TIGR02819 fdhA_non_GSH formald 98.3 7.8E-06 1.7E-10 61.4 10.5 46 71-117 342-390 (393)
109 PLN02702 L-idonate 5-dehydroge 98.3 7.9E-06 1.7E-10 60.4 10.5 115 1-116 204-363 (364)
110 cd08298 CAD2 Cinnamyl alcohol 98.3 5E-06 1.1E-10 60.3 9.2 113 1-115 190-329 (329)
111 cd08272 MDR6 Medium chain dehy 98.3 1.4E-05 3E-10 57.3 11.0 113 1-117 168-326 (326)
112 cd08248 RTN4I1 Human Reticulon 98.3 2.4E-05 5.2E-10 57.2 11.7 113 1-116 186-350 (350)
113 cd08283 FDH_like_1 Glutathione 98.3 2.1E-05 4.5E-10 58.7 11.3 50 67-116 333-385 (386)
114 cd08268 MDR2 Medium chain dehy 98.2 3.4E-05 7.4E-10 55.3 11.3 114 1-116 168-327 (328)
115 cd08282 PFDH_like Pseudomonas 98.2 1.5E-05 3.3E-10 59.2 9.7 48 68-116 325-374 (375)
116 cd08267 MDR1 Medium chain dehy 98.2 3.4E-05 7.4E-10 55.3 10.2 112 1-115 167-319 (319)
117 cd08299 alcohol_DH_class_I_II_ 98.1 4.4E-05 9.5E-10 56.8 10.5 114 1-117 213-373 (373)
118 cd05289 MDR_like_2 alcohol deh 98.1 5.8E-05 1.3E-09 53.7 10.2 112 1-115 168-309 (309)
119 cd08273 MDR8 Medium chain dehy 98.0 0.00015 3.3E-09 52.4 11.2 47 69-115 284-330 (331)
120 cd05279 Zn_ADH1 Liver alcohol 98.0 0.00011 2.3E-09 54.5 9.9 111 1-115 206-364 (365)
121 cd08255 2-desacetyl-2-hydroxye 97.9 0.0002 4.3E-09 50.7 9.6 114 1-115 120-277 (277)
122 cd08275 MDR3 Medium chain dehy 97.8 0.00068 1.5E-08 48.9 10.8 48 70-117 290-337 (337)
123 cd08264 Zn_ADH_like2 Alcohol d 97.6 0.0008 1.7E-08 48.7 8.8 43 69-113 282-324 (325)
124 KOG0025 Zn2+-binding dehydroge 97.6 0.00079 1.7E-08 48.6 8.4 50 68-117 302-352 (354)
125 TIGR03366 HpnZ_proposed putati 97.5 0.00028 6.1E-09 50.4 6.1 31 1-32 143-174 (280)
126 cd08247 AST1_like AST1 is a cy 96.7 0.0031 6.6E-08 46.3 4.9 49 69-117 304-352 (352)
127 cd08258 Zn_ADH4 Alcohol dehydr 96.2 0.038 8.2E-07 39.9 7.8 37 1-40 187-225 (306)
128 cd00401 AdoHcyase S-adenosyl-L 94.3 0.38 8.3E-06 36.7 8.1 115 1-117 224-376 (413)
129 cd05188 MDR Medium chain reduc 90.5 0.64 1.4E-05 32.2 4.6 37 1-39 157-193 (271)
130 PRK09424 pntA NAD(P) transhydr 85.7 1.5 3.2E-05 34.5 4.3 29 1-30 187-216 (509)
131 PRK04148 hypothetical protein; 71.4 10 0.00022 24.5 4.1 18 2-19 39-56 (134)
132 COG4221 Short-chain alcohol de 68.6 19 0.0004 25.8 5.2 32 1-32 29-64 (246)
133 KOG1209 1-Acyl dihydroxyaceton 57.5 30 0.00064 24.7 4.5 31 2-32 32-63 (289)
134 COG0569 TrkA K+ transport syst 55.4 18 0.00039 25.2 3.3 38 2-42 92-130 (225)
135 TIGR00561 pntA NAD(P) transhyd 51.7 25 0.00055 27.9 3.9 26 1-27 186-211 (511)
136 PRK10669 putative cation:proto 51.6 23 0.0005 28.1 3.7 28 3-31 509-536 (558)
137 cd08247 AST1_like AST1 is a cy 51.5 33 0.00073 25.0 4.4 27 4-32 180-206 (352)
138 PRK08261 fabG 3-ketoacyl-(acyl 47.3 15 0.00032 28.1 2.0 48 1-50 61-124 (450)
139 cd04743 NPD_PKS 2-Nitropropane 46.8 43 0.00094 24.9 4.3 26 2-28 103-128 (320)
140 cd08238 sorbose_phosphate_red 44.8 5.9 0.00013 30.0 -0.5 45 72-118 349-396 (410)
141 PF03060 NMO: Nitronate monoox 43.0 53 0.0012 24.3 4.3 27 1-28 135-161 (330)
142 PRK10537 voltage-gated potassi 42.4 42 0.00092 25.6 3.8 28 3-31 330-357 (393)
143 COG3048 DsdA D-serine dehydrat 40.3 54 0.0012 24.6 3.8 38 1-42 182-222 (443)
144 COG2179 Predicted hydrolase of 39.8 1.1E+02 0.0023 20.8 4.8 47 2-50 62-118 (175)
145 TIGR00518 alaDH alanine dehydr 37.2 99 0.0021 23.3 5.0 23 1-23 189-211 (370)
146 PF13684 Dak1_2: Dihydroxyacet 36.4 57 0.0012 24.1 3.5 38 4-42 98-140 (313)
147 KOG1207 Diacetyl reductase/L-x 35.0 78 0.0017 21.9 3.7 19 1-19 30-48 (245)
148 cd01075 NAD_bind_Leu_Phe_Val_D 34.2 78 0.0017 21.6 3.8 25 1-25 50-74 (200)
149 PRK09140 2-dehydro-3-deoxy-6-p 31.4 1.4E+02 0.0029 20.6 4.6 44 6-50 67-111 (206)
150 COG0134 TrpC Indole-3-glycerol 31.1 1.4E+02 0.003 21.5 4.7 9 21-29 154-162 (254)
151 PRK05693 short chain dehydroge 30.1 1.5E+02 0.0033 20.6 4.9 31 1-32 24-55 (274)
152 PRK08306 dipicolinate synthase 29.9 95 0.0021 22.6 3.8 23 1-24 174-196 (296)
153 PF05853 DUF849: Prokaryotic p 29.8 2.1E+02 0.0045 20.7 5.5 50 67-117 123-172 (272)
154 COG0686 Ald Alanine dehydrogen 29.1 1.5E+02 0.0033 22.4 4.6 41 1-42 190-231 (371)
155 TIGR03599 YloV DAK2 domain fus 28.2 93 0.002 24.9 3.7 38 4-42 316-358 (530)
156 TIGR03151 enACPred_II putative 28.1 1.2E+02 0.0025 22.4 4.0 26 2-28 109-134 (307)
157 PF13065 DUF3928: Protein of u 25.8 1.4E+02 0.0031 17.2 4.0 36 67-105 56-91 (95)
158 COG2969 SspB Stringent starvat 25.2 1.5E+02 0.0033 19.4 3.6 48 69-120 10-57 (155)
159 PRK08017 oxidoreductase; Provi 25.2 1.3E+02 0.0029 20.5 3.8 30 2-32 26-56 (256)
160 PF07109 Mg-por_mtran_C: Magne 25.1 89 0.0019 19.0 2.5 29 91-120 7-35 (97)
161 KOG1575 Voltage-gated shaker-l 23.8 1.4E+02 0.0031 22.5 3.8 39 67-105 142-180 (336)
162 COG0031 CysK Cysteine synthase 23.5 2.2E+02 0.0047 21.1 4.6 30 1-31 84-116 (300)
163 KOG1509 Predicted nucleic acid 23.5 1.7E+02 0.0036 20.4 3.8 27 2-29 9-35 (209)
164 PRK00648 Maf-like protein; Rev 22.7 1.7E+02 0.0038 19.9 3.8 27 1-28 1-27 (191)
165 COG0677 WecC UDP-N-acetyl-D-ma 22.5 1.8E+02 0.0039 22.7 4.1 87 1-90 31-129 (436)
166 PRK05993 short chain dehydroge 22.3 2.2E+02 0.0048 19.9 4.5 31 1-32 27-58 (277)
167 TIGR01170 rplA_mito ribosomal 22.1 1.6E+02 0.0034 19.1 3.4 37 4-45 54-90 (141)
168 PLN02460 indole-3-glycerol-pho 21.6 2.2E+02 0.0048 21.5 4.4 21 21-41 228-248 (338)
169 COG4013 Uncharacterized protei 21.5 1.6E+02 0.0036 17.4 3.0 27 93-119 64-90 (91)
170 COG2227 UbiG 2-polyprenyl-3-me 21.1 1.5E+02 0.0032 21.3 3.3 43 1-45 80-125 (243)
171 COG0656 ARA1 Aldo/keto reducta 21.1 1.8E+02 0.0038 21.3 3.8 35 69-103 120-154 (280)
172 cd01455 vWA_F11C1-5a_type Von 20.6 2.6E+02 0.0056 19.2 4.3 50 69-120 71-121 (191)
173 PF12324 HTH_15: Helix-turn-he 20.6 82 0.0018 18.3 1.6 48 67-114 21-74 (77)
174 PRK13957 indole-3-glycerol-pho 20.5 2.7E+02 0.0058 20.0 4.5 25 16-41 145-169 (247)
175 cd02172 RfaE_N N-terminal doma 20.3 2.4E+02 0.0052 18.0 4.0 38 11-50 55-95 (144)
176 PRK09496 trkA potassium transp 20.0 1.2E+02 0.0026 23.1 2.9 26 4-30 325-350 (453)
No 1
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.79 E-value=1.4e-18 Score=123.07 Aligned_cols=118 Identities=38% Similarity=0.623 Sum_probs=99.4
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecC--
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSA-- 50 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~-- 50 (129)
.||+|++++++++|.+++++.+|.|.+|||++ +++.+.+.+ ||++.||.
T Consensus 174 kG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~-~d~~~~L~~a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~IS 252 (340)
T COG2130 174 KGCRVVGIAGGAEKCDFLTEELGFDAGIDYKA-EDFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAIS 252 (340)
T ss_pred hCCeEEEecCCHHHHHHHHHhcCCceeeecCc-ccHHHHHHHHCCCCeEEEEEcCCchHHHHHHHhhccccceeeeeehh
Confidence 48999999999999999996699999999999 899999887 89999998
Q ss_pred -CCCCCCC---CC--cceeccc-------------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccc
Q 039636 51 -SKHETPR---EN--CSMWNDL-------------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVG 111 (129)
Q Consensus 51 -~~~~~~~---~~--~l~~~~~-------------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~G 111 (129)
|+...++ ++ .++.++. ...++.+++..|+.+|+|+...+++..|+++++||.-+.+|+++|
T Consensus 253 ~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti~dGlEnaP~Af~gLl~G~N~G 332 (340)
T COG2130 253 QYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVDGLENAPEAFIGLLSGKNFG 332 (340)
T ss_pred hcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEeeehhhhhccHHHHHHHhcCCccc
Confidence 5544221 11 2232222 456899999999999999999988779999999999999999999
Q ss_pred eEEEEeCC
Q 039636 112 KQALDLDS 119 (129)
Q Consensus 112 kvvv~~~~ 119 (129)
|.|+++.+
T Consensus 333 K~vvKv~~ 340 (340)
T COG2130 333 KLVVKVAD 340 (340)
T ss_pred eEEEEecC
Confidence 99999864
No 2
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.68 E-value=9.8e-16 Score=111.27 Aligned_cols=116 Identities=23% Similarity=0.253 Sum_probs=93.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------ccEEEecCCC-CCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------GQNARCSASK-HET 55 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------G~~v~~G~~~-~~~ 55 (129)
+||+|++++++++|+++++ +||+|++++.++ +++.+.+.+ |+++.+|... ...
T Consensus 189 ~ga~Via~~~~~~K~e~a~-~lGAd~~i~~~~-~~~~~~~~~~~d~ii~tv~~~~~~~~l~~l~~~G~~v~vG~~~~~~~ 266 (339)
T COG1064 189 MGAEVIAITRSEEKLELAK-KLGADHVINSSD-SDALEAVKEIADAIIDTVGPATLEPSLKALRRGGTLVLVGLPGGGPI 266 (339)
T ss_pred cCCeEEEEeCChHHHHHHH-HhCCcEEEEcCC-chhhHHhHhhCcEEEECCChhhHHHHHHHHhcCCEEEEECCCCCccc
Confidence 5899999999999999998 999999999875 666666552 9999999832 111
Q ss_pred CCCC--cceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEeC
Q 039636 56 PREN--CSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDLD 118 (129)
Q Consensus 56 ~~~~--~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~~ 118 (129)
+..+ .++.++. .....+++++++..+|.|+|.+..+++|+++++||++|++++..|++||++.
T Consensus 267 ~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~ 338 (339)
T COG1064 267 PLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDMS 338 (339)
T ss_pred CCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCceeeEEeeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence 1111 2333322 5577889999999999999999656899999999999999999999999864
No 3
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.67 E-value=4.9e-16 Score=110.05 Aligned_cols=119 Identities=61% Similarity=1.043 Sum_probs=99.6
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecC--
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSA-- 50 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~-- 50 (129)
+||.|+++++|++|.+++++++|.|.+|||++..++.+++++ ||++.||.
T Consensus 177 ~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~IS 256 (343)
T KOG1196|consen 177 MGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMIS 256 (343)
T ss_pred cCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeeh
Confidence 589999999999999999988999999999983377888777 99999998
Q ss_pred -CCCCCCC--CC--cceeccc------------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceE
Q 039636 51 -SKHETPR--EN--CSMWNDL------------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQ 113 (129)
Q Consensus 51 -~~~~~~~--~~--~l~~~~~------------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkv 113 (129)
++...+. +| .++.++. ...++++.+.+++++|+|+...++...|+..++||.-|.+|++.||.
T Consensus 257 qYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi~~Glen~P~A~vglf~GkNvGKq 336 (343)
T KOG1196|consen 257 QYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDIADGLENGPSALVGLFHGKNVGKQ 336 (343)
T ss_pred hccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhHHHHHhccHHHHHHHhccCcccce
Confidence 4433322 23 3344332 56888999999999999999988877999999999999999999999
Q ss_pred EEEeCC
Q 039636 114 ALDLDS 119 (129)
Q Consensus 114 vv~~~~ 119 (129)
++.+..
T Consensus 337 iv~va~ 342 (343)
T KOG1196|consen 337 LVKVAR 342 (343)
T ss_pred EEEeec
Confidence 999864
No 4
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=101.26 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=96.5
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
.|+++|+++++.+|.+.++ +.|+.|.|+|+. +|+.+++.+ |.+|.+|..
T Consensus 170 ~~a~tI~~asTaeK~~~ak-enG~~h~I~y~~-eD~v~~V~kiTngKGVd~vyDsvG~dt~~~sl~~Lk~~G~mVSfG~a 247 (336)
T KOG1197|consen 170 VGAHTIATASTAEKHEIAK-ENGAEHPIDYST-EDYVDEVKKITNGKGVDAVYDSVGKDTFAKSLAALKPMGKMVSFGNA 247 (336)
T ss_pred cCcEEEEEeccHHHHHHHH-hcCCcceeeccc-hhHHHHHHhccCCCCceeeeccccchhhHHHHHHhccCceEEEeccc
Confidence 4789999999999999998 999999999998 899998887 788888873
Q ss_pred CCCCCC--------CC-cceeccc--------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEE
Q 039636 52 KHETPR--------EN-CSMWNDL--------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 52 ~~~~~~--------~~-~l~~~~~--------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
++...+ ++ .+.+.++ .+.....+++.++.+|.|++.++.+|||+++.+|+..+++++..||++
T Consensus 248 sgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~~ypls~vadA~~diesrktvGkvl 327 (336)
T KOG1197|consen 248 SGLIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDHVYPLSKVADAHADIESRKTVGKVL 327 (336)
T ss_pred cCCCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceeeeeecchHHHHHHHHHHHhhhccceEE
Confidence 332211 01 2222221 345577889999999999999999999999999999999999999999
Q ss_pred EEeCCCc
Q 039636 115 LDLDSCL 121 (129)
Q Consensus 115 v~~~~~~ 121 (129)
+...++.
T Consensus 328 Llp~~~~ 334 (336)
T KOG1197|consen 328 LLPGPEK 334 (336)
T ss_pred EeCCccc
Confidence 9887653
No 5
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.54 E-value=1.2e-13 Score=101.50 Aligned_cols=119 Identities=53% Similarity=0.865 Sum_probs=88.2
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSASK 52 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~~ 52 (129)
+|++|++++++++|.+++++++|+++++|+++..++.+.+++ |+++.+|...
T Consensus 182 ~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~~~~~~~~~~l~~~G~iv~~G~~~ 261 (348)
T PLN03154 182 HGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGDMLDAALLNMKIHGRIAVCGMVS 261 (348)
T ss_pred cCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCCHHHHHHHHHHhccCCEEEEECccc
Confidence 488999999999999988646999999998741255554432 8898888622
Q ss_pred CCCC-----CCC--cceeccc------------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceE
Q 039636 53 HETP-----REN--CSMWNDL------------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQ 113 (129)
Q Consensus 53 ~~~~-----~~~--~l~~~~~------------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkv 113 (129)
.... ..+ .++.++. ...+.++++++++.+|.|++.+..+++|+++++||+.+++++..||+
T Consensus 262 ~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~~~~~~~L~~~~~A~~~l~~g~~~GKv 341 (348)
T PLN03154 262 LNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIEDMSEGLESAPAALVGLFSGKNVGKQ 341 (348)
T ss_pred cCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCceecccCHHHHHHHHHHHHcCCCCceE
Confidence 1110 001 1222221 12456788999999999999887779999999999999999999999
Q ss_pred EEEeCC
Q 039636 114 ALDLDS 119 (129)
Q Consensus 114 vv~~~~ 119 (129)
||++++
T Consensus 342 Vl~~~~ 347 (348)
T PLN03154 342 VIRVAK 347 (348)
T ss_pred EEEecC
Confidence 999864
No 6
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.54 E-value=1.4e-13 Score=100.49 Aligned_cols=115 Identities=31% Similarity=0.398 Sum_probs=85.9
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|+++++++++++|.++++ ++|+|++++|++ ++|.+++++ |+++.||..
T Consensus 166 ~G~~~v~~~~s~~k~~~~~-~lGAd~vi~y~~-~~~~~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 166 LGATVVAVVSSSEKLELLK-ELGADHVINYRE-EDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred cCCcEEEEecCHHHHHHHH-hcCCCEEEcCCc-ccHHHHHHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecC
Confidence 4778888888888888887 999999999998 789999875 899999874
Q ss_pred CC-CCCCCC--cceeccc-------------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHc-CCccceEE
Q 039636 52 KH-ETPREN--CSMWNDL-------------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFS-GRNVGKQA 114 (129)
Q Consensus 52 ~~-~~~~~~--~l~~~~~-------------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~-~~~~Gkvv 114 (129)
++ .....+ .++.+.. ...+.++++++++.+|.++|.+..+|||++..++..+... ++..||+|
T Consensus 244 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~e~~~a~a~~~~~~~~~GKvv 323 (326)
T COG0604 244 SGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVV 323 (326)
T ss_pred CCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCcceeccEechhhhHHHHHHHHcccCCcceEE
Confidence 32 111111 1111111 2367899999999999999999988999995544444444 58999999
Q ss_pred EEe
Q 039636 115 LDL 117 (129)
Q Consensus 115 v~~ 117 (129)
+++
T Consensus 324 l~~ 326 (326)
T COG0604 324 LKV 326 (326)
T ss_pred EeC
Confidence 874
No 7
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=4.4e-13 Score=96.08 Aligned_cols=120 Identities=17% Similarity=0.121 Sum_probs=90.9
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc---------------------------ccEEEecCCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR---------------------------GQNARCSASKH 53 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~---------------------------G~~v~~G~~~~ 53 (129)
+|++|+++++++.|++.+.+.||||++++..+.+++.+++.. |++|.+|....
T Consensus 204 MG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 204 MGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred hCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCC
Confidence 689999999988555555558999999988832677766665 88888887332
Q ss_pred CC-CCCCcceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEeCCCc
Q 039636 54 ET-PRENCSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDLDSCL 121 (129)
Q Consensus 54 ~~-~~~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~~~~~ 121 (129)
.. ....+++..+. ......+++++++.+|.|++.+.. .+++++++|+++|++++..+|.||+++.+.
T Consensus 284 ~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~~IE~-v~~~~v~~a~erm~kgdV~yRfVvD~s~~~ 358 (360)
T KOG0023|consen 284 PLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIKSPIEL-VKLSEVNEAYERMEKGDVRYRFVVDVSKSL 358 (360)
T ss_pred cccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCcCceEE-EehhHHHHHHHHHHhcCeeEEEEEEccccc
Confidence 11 11112222222 556778999999999999999886 599999999999999999999999987653
No 8
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.42 E-value=3.5e-12 Score=92.61 Aligned_cols=113 Identities=15% Similarity=0.090 Sum_probs=84.3
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|++++++++|.+.++ ++|+++++++++ .++.+.+++ |+++.+|..
T Consensus 167 ~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~-~~~~~~v~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~ 244 (324)
T cd08291 167 DGIKVINIVRRKEQVDLLK-KIGAEYVLNSSD-PDFLEDLKELIAKLNATIFFDAVGGGLTGQILLAMPYGSTLYVYGYL 244 (324)
T ss_pred cCCEEEEEeCCHHHHHHHH-HcCCcEEEECCC-ccHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHhhCCCCEEEEEEec
Confidence 4889999999999999998 899999999887 667665543 788887752
Q ss_pred CCCC---CCCCcceeccc-------------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 52 KHET---PRENCSMWNDL-------------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 52 ~~~~---~~~~~l~~~~~-------------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
+... .....++.++. ...+.++++++++. |.+++.+..+|+|+++.+||+.+.+++..||++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~ 323 (324)
T cd08291 245 SGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TELKTTFASRYPLALTLEAIAFYSKNMSTGKKLL 323 (324)
T ss_pred CCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-CccccceeeEEcHHHHHHHHHHHHhCCCCCeEEe
Confidence 1111 10001111111 12557888999998 9999988888999999999999999999999987
Q ss_pred E
Q 039636 116 D 116 (129)
Q Consensus 116 ~ 116 (129)
.
T Consensus 324 ~ 324 (324)
T cd08291 324 I 324 (324)
T ss_pred C
Confidence 3
No 9
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.37 E-value=7.3e-12 Score=91.77 Aligned_cols=115 Identities=12% Similarity=0.112 Sum_probs=82.4
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc---------------------------ccEEEecCCC
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR---------------------------GQNARCSASK 52 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~---------------------------G~~v~~G~~~ 52 (129)
+|+ +|++++.+++++++++ ++|+++++|+++ +++.+.... |+++.+|...
T Consensus 192 ~G~~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~-~~~~~~~~~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~ 269 (343)
T PRK09880 192 LGAAEIVCADVSPRSLSLAR-EMGADKLVNPQN-DDLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGG 269 (343)
T ss_pred cCCcEEEEEeCCHHHHHHHH-HcCCcEEecCCc-ccHHHHhccCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCC
Confidence 477 6999999999999998 899999999876 454432211 8888887622
Q ss_pred CCCC-CCCcceeccc------chHHHHHHHHHHHHcCCcee--eeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 53 HETP-RENCSMWNDL------TYSKFLDVVLPLIREGKIVY--VEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 53 ~~~~-~~~~l~~~~~------~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
.... ....++.++. ...+.++++++++.+|.|++ .+..+|+|+++++||+.+.+++..||+++.+
T Consensus 270 ~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 343 (343)
T PRK09880 270 APPEFPMMTLIVKEISLKGSFRFTEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF 343 (343)
T ss_pred CCCccCHHHHHhCCcEEEEEeeccccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence 1111 0001222211 23456899999999999986 3455689999999999999988889999863
No 10
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.35 E-value=2e-11 Score=88.35 Aligned_cols=115 Identities=38% Similarity=0.715 Sum_probs=85.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCC-
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSAS- 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~- 51 (129)
+|++|+++++++++.+.++ ++|+++++++++ +++.+.+++ |+++.+|..
T Consensus 167 ~G~~vi~~~~s~~~~~~l~-~~Ga~~vi~~~~-~~~~~~v~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~~~ 244 (329)
T cd08294 167 KGCKVIGCAGSDDKVAWLK-ELGFDAVFNYKT-VSLEEALKEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGSIS 244 (329)
T ss_pred cCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCC-ccHHHHHHHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcchh
Confidence 4889999999999999998 899999999987 677665532 788888751
Q ss_pred --CCCCC---CCC--cceeccc------------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccce
Q 039636 52 --KHETP---REN--CSMWNDL------------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGK 112 (129)
Q Consensus 52 --~~~~~---~~~--~l~~~~~------------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gk 112 (129)
..... ... .++.++. ...+.++++++++.+|.+++.+..+++++++.+|++.+.+++..||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gk 324 (329)
T cd08294 245 TYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYREHVTEGFENMPQAFIGMLKGENTGK 324 (329)
T ss_pred ccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCCcccccCHHHHHHHHHHHHcCCCCCe
Confidence 11000 000 1111111 1245678899999999999876667899999999999999999999
Q ss_pred EEEEe
Q 039636 113 QALDL 117 (129)
Q Consensus 113 vvv~~ 117 (129)
+|+++
T Consensus 325 vvv~~ 329 (329)
T cd08294 325 AIVKV 329 (329)
T ss_pred EEEeC
Confidence 99864
No 11
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.33 E-value=3.2e-11 Score=88.05 Aligned_cols=116 Identities=52% Similarity=0.886 Sum_probs=84.5
Q ss_pred CCcEEEEEeCChHHHHHHHHh-cCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNK-FAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~-lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~ 51 (129)
+|++|+++++++++.+.++ + +|+++++++++..++.+.+++ |+++.+|..
T Consensus 175 ~G~~Vi~~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~ 253 (338)
T cd08295 175 KGCYVVGSAGSDEKVDLLK-NKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGMI 253 (338)
T ss_pred cCCEEEEEeCCHHHHHHHH-HhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCHHHHHHHHHHhccCcEEEEeccc
Confidence 5899999999999999998 6 999999997641355554432 888888762
Q ss_pred CCCCC-----CCC--cceeccc------------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccce
Q 039636 52 KHETP-----REN--CSMWNDL------------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGK 112 (129)
Q Consensus 52 ~~~~~-----~~~--~l~~~~~------------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gk 112 (129)
+.... ..+ .++.++. ...+.++++++++.+|.+++.+..+|+|+++.+|++.+.+++..||
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~Gk 333 (338)
T cd08295 254 SQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDIADGLESAPEAFVGLFTGSNIGK 333 (338)
T ss_pred ccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEceeecccCHHHHHHHHHHHhcCCCCce
Confidence 21100 000 1111110 1245678899999999999887777999999999999999999999
Q ss_pred EEEEe
Q 039636 113 QALDL 117 (129)
Q Consensus 113 vvv~~ 117 (129)
+|+++
T Consensus 334 vVl~~ 338 (338)
T cd08295 334 QVVKV 338 (338)
T ss_pred EEEEC
Confidence 99874
No 12
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.33 E-value=1.9e-11 Score=89.94 Aligned_cols=115 Identities=30% Similarity=0.359 Sum_probs=83.4
Q ss_pred CcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCCCC
Q 039636 2 GCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSASKH 53 (129)
Q Consensus 2 Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~~~ 53 (129)
|+.++.+++++++.++++ ++|||+++||++ +++.+.+++ |+...++....
T Consensus 182 ~~~~v~t~~s~e~~~l~k-~lGAd~vvdy~~-~~~~e~~kk~~~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~ 259 (347)
T KOG1198|consen 182 GAIKVVTACSKEKLELVK-KLGADEVVDYKD-ENVVELIKKYTGKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGD 259 (347)
T ss_pred CCcEEEEEcccchHHHHH-HcCCcEeecCCC-HHHHHHHHhhcCCCccEEEECCCCCccccchhhhccCCceEEEEeccc
Confidence 444455666788899998 999999999999 888888776 22222211000
Q ss_pred CCCC-CCc---------------ceeccc------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccc
Q 039636 54 ETPR-ENC---------------SMWNDL------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVG 111 (129)
Q Consensus 54 ~~~~-~~~---------------l~~~~~------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~G 111 (129)
.... +.. +..... ...+.++.+.++++.|.|+|.+..+||++++.+|++.+.++...|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~~~~~G 339 (347)
T KOG1198|consen 260 ELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGKIKPVIDSVYPFSQAKEAFEKLEKSHATG 339 (347)
T ss_pred cccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCcccCCcceeeeHHHHHHHHHHHhhcCCcc
Confidence 0000 000 000000 568889999999999999999999999999999999999999999
Q ss_pred eEEEEeC
Q 039636 112 KQALDLD 118 (129)
Q Consensus 112 kvvv~~~ 118 (129)
|+++.+.
T Consensus 340 K~vl~~~ 346 (347)
T KOG1198|consen 340 KVVLEKD 346 (347)
T ss_pred eEEEEec
Confidence 9999875
No 13
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.31 E-value=3.9e-11 Score=89.21 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=79.7
Q ss_pred CCcEEEEEeCChHH-HHHHHHhcCCCEEEeCCCcccHHHH--------------------h---cc-ccEEEecCCCCCC
Q 039636 1 MGCYVVGSAGSKEK-IERLKNKFAFDDAFNYKEEQDLVTA--------------------L---KR-GQNARCSASKHET 55 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k-~~~~~~~lGad~vi~~~~~~~~~~~--------------------v---~~-G~~v~~G~~~~~~ 55 (129)
+|++|++++.++++ .++++ ++|+++++++++...+.+. + +. |+++.+|......
T Consensus 201 ~Ga~Vi~~~~~~~~~~~~a~-~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~ 279 (375)
T PLN02178 201 FGLRVTVISRSSEKEREAID-RLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPL 279 (375)
T ss_pred cCCeEEEEeCChHHhHHHHH-hCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCC
Confidence 48899999877655 56776 8999999987541111111 0 00 8888888632211
Q ss_pred C-CCCcceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 56 P-RENCSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 56 ~-~~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
. ....++.++. ...+.+.++++++.+|.|++.+. +|||+++++||+.+.+++..||+|+.+
T Consensus 280 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~i~-~~~l~~~~~A~~~~~~~~~~gkvvi~~ 348 (375)
T PLN02178 280 DLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIE-LIKMSDINSAMDRLAKSDVRYRFVIDV 348 (375)
T ss_pred ccCHHHHHhCCeEEEEeCccCHHHHHHHHHHHHhCCCcccEE-EEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence 1 1111222211 23467899999999999998874 599999999999999999999999998
No 14
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.30 E-value=4.8e-11 Score=86.66 Aligned_cols=115 Identities=43% Similarity=0.719 Sum_probs=83.5
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSASK 52 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~~ 52 (129)
+|++|+++++++++.++++ ++|+++++++++..++.+.++. |+++.+|..+
T Consensus 162 ~G~~Vi~~~~s~~~~~~~~-~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~~ 240 (325)
T TIGR02825 162 KGCKVVGAAGSDEKVAYLK-KLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAIS 240 (325)
T ss_pred cCCEEEEEeCCHHHHHHHH-HcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecchh
Confidence 4889999999999999998 8999999998751244433321 8888887621
Q ss_pred C-----CCCC-C-C-cceeccc-------------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccc
Q 039636 53 H-----ETPR-E-N-CSMWNDL-------------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVG 111 (129)
Q Consensus 53 ~-----~~~~-~-~-~l~~~~~-------------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~G 111 (129)
. ..+. . . .++.+.. ...+.++++++++.+|.+++.+..+++|+++.+|++.+.+++..|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~g 320 (325)
T TIGR02825 241 TYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKEYVIEGFENMPAAFMGMLKGENLG 320 (325)
T ss_pred hcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccceeccccHHHHHHHHHHHhcCCCCC
Confidence 1 0110 0 0 1111110 124578899999999999988777799999999999999999999
Q ss_pred eEEEE
Q 039636 112 KQALD 116 (129)
Q Consensus 112 kvvv~ 116 (129)
|+|++
T Consensus 321 kvVv~ 325 (325)
T TIGR02825 321 KTIVK 325 (325)
T ss_pred eEEeC
Confidence 99974
No 15
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.29 E-value=3.5e-11 Score=87.90 Aligned_cols=113 Identities=19% Similarity=0.098 Sum_probs=79.3
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcc-c--------------HHHHh---cc-ccEEEecCCCCCCCC--CC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQ-D--------------LVTAL---KR-GQNARCSASKHETPR--EN 59 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~-~--------------~~~~v---~~-G~~v~~G~~~~~~~~--~~ 59 (129)
+|++|++++++++|+++++ ++|+++++|+.+.. . +...+ +. |+++.+|......+. ..
T Consensus 188 ~G~~vi~~~~~~~~~~~a~-~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~ 266 (329)
T TIGR02822 188 QGATVHVMTRGAAARRLAL-ALGAASAGGAYDTPPEPLDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQ 266 (329)
T ss_pred CCCeEEEEeCChHHHHHHH-HhCCceeccccccCcccceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHH
Confidence 4889999999999999998 99999999853200 0 01111 11 999998862111111 11
Q ss_pred cceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 60 CSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 60 ~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
.++.+.. .....+.++++++.+|.+++. ..+|+|+++++||+.+.+++..||+||
T Consensus 267 ~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~i-~~~~~l~~~~~A~~~~~~~~~~Gkvvl 328 (329)
T TIGR02822 267 RHLFYERQIRSVTSNTRADAREFLELAAQHGVRVT-THTYPLSEADRALRDLKAGRFDGAAVL 328 (329)
T ss_pred HHhhCCcEEEEeecCCHHHHHHHHHHHHhCCCeeE-EEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence 1222211 335567889999999999865 456899999999999999999999987
No 16
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.27 E-value=6.4e-11 Score=86.40 Aligned_cols=113 Identities=20% Similarity=0.219 Sum_probs=80.3
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|++ |++++++++|.++++ ++|+++++++++ .+ .+.+.+ |+++.+|
T Consensus 186 ~G~~~vi~~~~~~~~~~~~~-~~ga~~~i~~~~-~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 186 LGAEDVIGVDPSPERLELAK-ALGADFVINSGQ-DD-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred cCCCEEEEECCCHHHHHHHH-HhCCCEEEcCCc-ch-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 4787 999999999999997 999999998875 43 333321 7787777
Q ss_pred CCCCCCCCC-Ccceeccc-------chHHHHHHHHHHHHcCCcee--eeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 50 ASKHETPRE-NCSMWNDL-------TYSKFLDVVLPLIREGKIVY--VEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 50 ~~~~~~~~~-~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
......... ..++.++. ...+.++++++++.+|.+.+ .+..+|+|+++++||+.+.+++ .||+||++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~-~gKvvi~~ 339 (339)
T cd08239 263 EGGELTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE-SGKVVFVF 339 (339)
T ss_pred CCCCcccCcHHHHHhCCCEEEEEecCCHHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCC-ceEEEEeC
Confidence 622111111 12222222 23567899999999999875 4555689999999999998875 79999875
No 17
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.26 E-value=1.5e-10 Score=84.56 Aligned_cols=116 Identities=31% Similarity=0.563 Sum_probs=84.2
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCC
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~ 51 (129)
+|+ +||++++++++.+.+++++|+++++++++ .++.+.+++ |+++.+|..
T Consensus 178 ~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~-~~~~~~i~~~~~~gvd~vid~~g~~~~~~~~~~l~~~G~iv~~G~~ 256 (345)
T cd08293 178 LGCSRVVGICGSDEKCQLLKSELGFDAAINYKT-DNVAERLRELCPEGVDVYFDNVGGEISDTVISQMNENSHIILCGQI 256 (345)
T ss_pred cCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHCCCCceEEEECCCcHHHHHHHHHhccCCEEEEEeee
Confidence 488 89999999999998874499999999887 667665542 888888741
Q ss_pred C---CC-C--CCC---------C-cceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCC
Q 039636 52 K---HE-T--PRE---------N-CSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGR 108 (129)
Q Consensus 52 ~---~~-~--~~~---------~-~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~ 108 (129)
+ .. . +.. . .+..... ...+.++++++++.+|.+++....+++++++.+||+.+.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~ 336 (345)
T cd08293 257 SQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNGG 336 (345)
T ss_pred ecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCccceeEEeecHHHHHHHHHHHhcCC
Confidence 1 10 0 000 0 0000000 234567888999999999987666679999999999999999
Q ss_pred ccceEEEEe
Q 039636 109 NVGKQALDL 117 (129)
Q Consensus 109 ~~Gkvvv~~ 117 (129)
..||+|+++
T Consensus 337 ~~gkvvl~~ 345 (345)
T cd08293 337 NIGKQIVKV 345 (345)
T ss_pred CCCeEEEEC
Confidence 999999874
No 18
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.25 E-value=8.1e-11 Score=87.15 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=81.9
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecC
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSA 50 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~ 50 (129)
+|+ +|++++.+++|+++++ ++|+++++++.+ +++.+.+++ |+++.+|.
T Consensus 214 ~G~~~Vi~~~~~~~r~~~a~-~~Ga~~~i~~~~-~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 214 AGASQVVAVDLNEDKLALAR-ELGATATVNAGD-PNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred cCCCcEEEEcCCHHHHHHHH-HcCCceEeCCCc-hhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEcc
Confidence 478 6999999999999997 999999999876 666555442 78888876
Q ss_pred CCCC-CCCCC--cceeccc----------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 51 SKHE-TPREN--CSMWNDL----------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 51 ~~~~-~~~~~--~l~~~~~----------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
.... ....+ .++.++. ...+.+.++++++.+|++++. +..+|+|+++++||+.+.+++..||+|+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~ 371 (371)
T cd08281 292 PDPEARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL 371 (371)
T ss_pred CCCCceeeecHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence 2211 11101 1222221 124678889999999999763 4556899999999999999999888764
No 19
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.22 E-value=3.2e-10 Score=83.62 Aligned_cols=119 Identities=17% Similarity=0.111 Sum_probs=80.8
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHH--------------------h---cc-ccEEEecCCCCCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTA--------------------L---KR-GQNARCSASKHETP 56 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~--------------------v---~~-G~~v~~G~~~~~~~ 56 (129)
+|++||+++++++++..+.+++|+++++++.+...+.+. + +. |+++.+|.......
T Consensus 203 ~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~ 282 (357)
T PLN02514 203 MGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQ 282 (357)
T ss_pred CCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCc
Confidence 478899998888877666547999888776431111110 0 00 88888886321111
Q ss_pred C-CCcceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEeCCC
Q 039636 57 R-ENCSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDLDSC 120 (129)
Q Consensus 57 ~-~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~~~~ 120 (129)
. ...++.++. .....+.++++++.+|.+++.+. +|+|+++.+||+.+.+++..||+|+.++..
T Consensus 283 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~l~~~i~-~~~l~~~~~A~~~~~~~~~~gk~v~~~~~~ 353 (357)
T PLN02514 283 FVTPMLMLGRKVITGSFIGSMKETEEMLEFCKEKGLTSMIE-VVKMDYVNTAFERLEKNDVRYRFVVDVAGS 353 (357)
T ss_pred ccHHHHhhCCcEEEEEecCCHHHHHHHHHHHHhCCCcCcEE-EEcHHHHHHHHHHHHcCCCceeEEEEcccc
Confidence 0 112222221 33456899999999999988775 699999999999999999899999998643
No 20
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.21 E-value=2.4e-10 Score=84.47 Aligned_cols=114 Identities=12% Similarity=0.061 Sum_probs=78.0
Q ss_pred CCcEEEEEeCChHHHH-HHHHhcCCCEEEeCCCccc-HHH--------------------Hh---cc-ccEEEecCCCCC
Q 039636 1 MGCYVVGSAGSKEKIE-RLKNKFAFDDAFNYKEEQD-LVT--------------------AL---KR-GQNARCSASKHE 54 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~-~~~~~lGad~vi~~~~~~~-~~~--------------------~v---~~-G~~v~~G~~~~~ 54 (129)
+|++|++++.++++.. .++ ++|+++++++++ .+ +.+ .+ +. |+++.+|.....
T Consensus 206 ~Ga~vi~~~~~~~~~~~~~~-~~Ga~~vi~~~~-~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~ 283 (360)
T PLN02586 206 FGLKVTVISSSSNKEDEAIN-RLGADSFLVSTD-PEKMKAAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKP 283 (360)
T ss_pred CCCEEEEEeCCcchhhhHHH-hCCCcEEEcCCC-HHHHHhhcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCC
Confidence 4888988887776654 445 899999988654 21 111 11 01 888888863211
Q ss_pred CC-CCCcceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 55 TP-RENCSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 55 ~~-~~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
.. ....++.++. ...+.++++++++.+|.|++.+. +|+|+++++||+.+.+++..||+|+++
T Consensus 284 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~~~~~-~~~l~~~~~A~~~~~~~~~~gkvvi~~ 353 (360)
T PLN02586 284 LELPIFPLVLGRKLVGGSDIGGIKETQEMLDFCAKHNITADIE-LIRMDEINTAMERLAKSDVRYRFVIDV 353 (360)
T ss_pred CccCHHHHHhCCeEEEEcCcCCHHHHHHHHHHHHhCCCCCcEE-EEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 11 1111221111 23457899999999999998764 699999999999999999899999987
No 21
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.19 E-value=1.1e-10 Score=84.55 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=81.8
Q ss_pred Cc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 2 GC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 2 Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
|| ++||++.+++|+++++ +|||.+++|.++..++.+.+.+ |+.+.+|..
T Consensus 209 gA~~IiAvD~~~~Kl~~A~-~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 209 GAGRIIAVDINPEKLELAK-KFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCceEEEEeCCHHHHHHHH-hcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 67 7999999999999998 9999999998872257766665 777777762
Q ss_pred CCCC--CCCC-cceeccc---------chHHHHHHHHHHHHcCCceeeeee--ecCcccHHHHHHHHHcCCccceEEEE
Q 039636 52 KHET--PREN-CSMWNDL---------TYSKFLDVVLPLIREGKIVYVEDI--VEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 52 ~~~~--~~~~-~l~~~~~---------~~~~~~~~~~~~~~~g~i~~~~~~--~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
+... +.+. .+...+. .-+.++.++++|+.+|+|.....+ +++|+++++||+.|.+|+.. |-||.
T Consensus 288 ~~~~~i~~~~~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi~ 365 (366)
T COG1062 288 GAGQEISTRPFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVIR 365 (366)
T ss_pred CCCceeecChHHeeccceEEEEeecCCccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee-eEEec
Confidence 2211 1111 2222211 335578999999999999776554 47999999999999998875 44443
No 22
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.18 E-value=1.8e-10 Score=93.96 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=86.7
Q ss_pred CCcEEEEEeCChHHHHHHHHhcC---CCEEEeCCCcccHHHHhcc-----------------------------ccEEEe
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFA---FDDAFNYKEEQDLVTALKR-----------------------------GQNARC 48 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lG---ad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~ 48 (129)
.|++|+.|++|.+|++++.+.|. ..++-|+++ .+|...++. ||+..+
T Consensus 1576 ~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRd-tsFEq~vl~~T~GrGVdlVLNSLaeEkLQASiRCLa~~GRFLEI 1654 (2376)
T KOG1202|consen 1576 HGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRD-TSFEQHVLWHTKGRGVDLVLNSLAEEKLQASIRCLALHGRFLEI 1654 (2376)
T ss_pred cCCEEEEecCcHHHHHHHHHhchhhhhhccccccc-ccHHHHHHHHhcCCCeeeehhhhhHHHHHHHHHHHHhcCeeeee
Confidence 48999999999999999986664 367778887 778877765 999999
Q ss_pred cCC---CCCCCC-----CC----cceeccc--chHHHHHHHHHHH----HcCCceeeeeeecCcccHHHHHHHHHcCCcc
Q 039636 49 SAS---KHETPR-----EN----CSMWNDL--TYSKFLDVVLPLI----REGKIVYVEDIVEGLENAPAALLGLFSGRNV 110 (129)
Q Consensus 49 G~~---~~~~~~-----~~----~l~~~~~--~~~~~~~~~~~~~----~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~ 110 (129)
|-+ +.++.. +| -++.... ...+.|.+++.++ ++|.++|....+|+-.++++||+.|.+|++.
T Consensus 1655 GKfDLSqNspLGMavfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHI 1734 (2376)
T KOG1202|consen 1655 GKFDLSQNSPLGMAVFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHI 1734 (2376)
T ss_pred cceecccCCcchhhhhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCcc
Confidence 862 222211 22 1111111 3344555555555 5678888888779999999999999999999
Q ss_pred ceEEEEeCCCc
Q 039636 111 GKQALDLDSCL 121 (129)
Q Consensus 111 Gkvvv~~~~~~ 121 (129)
||+|+++.++.
T Consensus 1735 GKVvikvr~eE 1745 (2376)
T KOG1202|consen 1735 GKVVIKVRAEE 1745 (2376)
T ss_pred ceEEEEEcccc
Confidence 99999996543
No 23
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.17 E-value=5.8e-10 Score=82.20 Aligned_cols=113 Identities=14% Similarity=0.192 Sum_probs=80.6
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|+ +|++++++++++++++ ++|+++++++++ +++.+.+.+ |+++.+|
T Consensus 199 ~G~~~Vi~~~~~~~~~~~~~-~~Ga~~~i~~~~-~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 199 AGASKIIAVDIDDRKLEWAR-EFGATHTVNSSG-TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred cCCCeEEEEcCCHHHHHHHH-HcCCceEEcCCC-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEC
Confidence 477 5999999999999997 999999999876 566555443 8888887
Q ss_pred CCCCC-CCCCC--cceeccc----------chHHHHHHHHHHHHcCCcee--eeeeecCcccHHHHHHHHHcCCccceEE
Q 039636 50 ASKHE-TPREN--CSMWNDL----------TYSKFLDVVLPLIREGKIVY--VEDIVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 50 ~~~~~-~~~~~--~l~~~~~----------~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
..... ....+ .++.++. ...+.++++++++.+|.+++ .+..+|||+++.+||+.+++++.. |++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~ 355 (358)
T TIGR03451 277 VPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL-RSV 355 (358)
T ss_pred CCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcc-eeE
Confidence 62211 10000 1111111 13567889999999999976 355668999999999999988765 777
Q ss_pred EE
Q 039636 115 LD 116 (129)
Q Consensus 115 v~ 116 (129)
|.
T Consensus 356 ~~ 357 (358)
T TIGR03451 356 VE 357 (358)
T ss_pred Ee
Confidence 64
No 24
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.16 E-value=4.8e-10 Score=82.18 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=79.8
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-------------------------------ccEEEe
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-------------------------------GQNARC 48 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-------------------------------G~~v~~ 48 (129)
+|++ |+++++++++.++++ ++|+++++++++ .+. +.+.+ |+++.+
T Consensus 183 ~G~~~v~~~~~~~~~~~~~~-~~Ga~~~i~~~~-~~~-~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 183 LGAKSVTAIDINSEKLALAK-SLGAMQTFNSRE-MSA-PQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred cCCCeEEEECCCHHHHHHHH-HcCCceEecCcc-cCH-HHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4775 788889999999987 899999998765 331 11111 788888
Q ss_pred cCCCCCC-CC-C--Ccceeccc-------c-----hHHHHHHHHHHHHcCCce--eeeeeecCcccHHHHHHHHHcCCcc
Q 039636 49 SASKHET-PR-E--NCSMWNDL-------T-----YSKFLDVVLPLIREGKIV--YVEDIVEGLENAPAALLGLFSGRNV 110 (129)
Q Consensus 49 G~~~~~~-~~-~--~~l~~~~~-------~-----~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~~~ 110 (129)
|...... .. . +.++.++. . ..+.++++++++.+|.+. +.+..+|+|+++++||+.+.+++..
T Consensus 260 G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~ 339 (347)
T PRK10309 260 GTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMP 339 (347)
T ss_pred ccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcc
Confidence 7632211 00 0 01222211 0 146789999999999985 4556668999999999999999889
Q ss_pred ceEEEEe
Q 039636 111 GKQALDL 117 (129)
Q Consensus 111 Gkvvv~~ 117 (129)
||+|+++
T Consensus 340 gKvvv~~ 346 (347)
T PRK10309 340 GKVLLQI 346 (347)
T ss_pred eEEEEeC
Confidence 9999975
No 25
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.16 E-value=5.7e-10 Score=81.96 Aligned_cols=114 Identities=21% Similarity=0.174 Sum_probs=79.2
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcc---cHHHHhcc----------------------------------c
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQ---DLVTALKR----------------------------------G 43 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~---~~~~~v~~----------------------------------G 43 (129)
+|++|++++++++++++++ ++|+++++++.+ . ++.+.+++ |
T Consensus 189 ~G~~vi~~~~~~~~~~~~~-~~Ga~~~i~~~~-~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G 266 (349)
T TIGR03201 189 MGAAVVAIDIDPEKLEMMK-GFGADLTLNPKD-KSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGG 266 (349)
T ss_pred cCCeEEEEcCCHHHHHHHH-HhCCceEecCcc-ccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCC
Confidence 4789999999999999997 899999998765 2 23332211 7
Q ss_pred cEEEecCCCCCCC-CCCcceeccc-------chHHHHHHHHHHHHcCCceeee-eeecCcccHHHHHHHHHcCCccceEE
Q 039636 44 QNARCSASKHETP-RENCSMWNDL-------TYSKFLDVVLPLIREGKIVYVE-DIVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 44 ~~v~~G~~~~~~~-~~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~-~~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
+++.+|....... ....++.... .....+.++++++.+|.|++.. ..+|+|+++++||+.+.+++..||++
T Consensus 267 ~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~g~i~~~~~i~~~~l~~~~~A~~~~~~~~~~~k~~ 346 (349)
T TIGR03201 267 TLVVVGYTMAKTEYRLSNLMAFHARALGNWGCPPDRYPAALDLVLDGKIQLGPFVERRPLDQIEHVFAAAHHHKLKRRAI 346 (349)
T ss_pred eEEEECcCCCCcccCHHHHhhcccEEEEEecCCHHHHHHHHHHHHcCCCCcccceEEecHHHHHHHHHHHHcCCccceEE
Confidence 7777775221111 0001221111 2345789999999999997632 23589999999999999999999998
Q ss_pred EE
Q 039636 115 LD 116 (129)
Q Consensus 115 v~ 116 (129)
++
T Consensus 347 ~~ 348 (349)
T TIGR03201 347 LT 348 (349)
T ss_pred ec
Confidence 85
No 26
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.14 E-value=5e-10 Score=82.13 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=81.3
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|+ +|+++++++++.++++ ++|++.++++++ .++.+.+++ |+++.+|
T Consensus 195 ~G~~~v~~~~~~~~~~~~~~-~~ga~~~i~~~~-~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 195 AGASKIIVSEPSEARRELAE-ELGATIVLDPTE-VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred cCCCEEEEECCCHHHHHHHH-HhCCCEEECCCc-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEc
Confidence 478 7999999999999997 899999999887 666655543 6777776
Q ss_pred CCCCCCCCCC-cceeccc-------chHHHHHHHHHHHHcCCcee--eeeeecCcccH-HHHHHHHHcCCcc-ceEEEE
Q 039636 50 ASKHETPREN-CSMWNDL-------TYSKFLDVVLPLIREGKIVY--VEDIVEGLENA-PAALLGLFSGRNV-GKQALD 116 (129)
Q Consensus 50 ~~~~~~~~~~-~l~~~~~-------~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~-~~a~~~~~~~~~~-Gkvvv~ 116 (129)
.......... .++.+.. ...+.++++++++.+|.|++ .+..+|+|+++ ++||+.+.+++.. ||+||.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~ 351 (351)
T cd08233 273 IWEKPISFNPNDLVLKEKTLTGSICYTREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS 351 (351)
T ss_pred cCCCCCccCHHHHHhhCcEEEEEeccCcchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence 5221111000 1222211 23567899999999999964 45566899996 7999999999875 999873
No 27
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.13 E-value=1.1e-09 Score=79.78 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=81.5
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc---------------------------ccEEEecCCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR---------------------------GQNARCSASKH 53 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~---------------------------G~~v~~G~~~~ 53 (129)
+|++|+++++++++.+.++ ++|+++++++.+ .++.+.+++ |+++.+|..+.
T Consensus 186 ~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~-~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 263 (333)
T cd08296 186 MGFRTVAISRGSDKADLAR-KLGAHHYIDTSK-EDVAEALQELGGAKLILATAPNAKAISALVGGLAPRGKLLILGAAGE 263 (333)
T ss_pred CCCeEEEEeCChHHHHHHH-HcCCcEEecCCC-ccHHHHHHhcCCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCCC
Confidence 4889999999999999997 999999998876 555444332 67777765221
Q ss_pred CCCCC-Ccceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 54 ETPRE-NCSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 54 ~~~~~-~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
..+.. ..++.+.. .....++++++++.++.+++.+. +++++++.+|++.+.+++.+||+|++
T Consensus 264 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~v~-~~~~~~~~~a~~~~~~~~~~gk~v~~ 333 (333)
T cd08296 264 PVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKFSALHGVRPMVE-TFPLEKANEAYDRMMSGKARFRVVLT 333 (333)
T ss_pred CCCcCHHHHhhcccEEEEeCcCCHHHHHHHHHHHHhCCCCceEE-EEEHHHHHHHHHHHHCCCCceeEEeC
Confidence 11100 01112221 33466788899999999987654 58999999999999999999999874
No 28
>PLN02827 Alcohol dehydrogenase-like
Probab=99.09 E-value=1.8e-09 Score=80.31 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=80.8
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCc-ccHHHHhcc------------------------------ccEEEe
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEE-QDLVTALKR------------------------------GQNARC 48 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~-~~~~~~v~~------------------------------G~~v~~ 48 (129)
+|+ .|++++++++|.++++ ++|+++++++++. +++.+.+++ |+++.+
T Consensus 216 ~G~~~vi~~~~~~~~~~~a~-~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 216 RGASQIIGVDINPEKAEKAK-TFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred cCCCeEEEECCCHHHHHHHH-HcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEE
Confidence 477 5888888999999997 9999999987641 244444332 577777
Q ss_pred cCCCCCCC-CC-Ccceeccc----------chHHHHHHHHHHHHcCCcee--eeeeecCcccHHHHHHHHHcCCccceEE
Q 039636 49 SASKHETP-RE-NCSMWNDL----------TYSKFLDVVLPLIREGKIVY--VEDIVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 49 G~~~~~~~-~~-~~l~~~~~----------~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
|....... .. +.++.++. .....++++++++.+|.|++ .+..+|+|+++.+||+.+.+++. +|+|
T Consensus 295 G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~v 373 (378)
T PLN02827 295 GVPKAKPEVSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-LRCV 373 (378)
T ss_pred CCcCCCccccccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEE
Confidence 76221111 01 11222221 12456789999999999988 56666899999999999998876 6999
Q ss_pred EEeC
Q 039636 115 LDLD 118 (129)
Q Consensus 115 v~~~ 118 (129)
|.+.
T Consensus 374 i~~~ 377 (378)
T PLN02827 374 IHMP 377 (378)
T ss_pred EEec
Confidence 9763
No 29
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.00 E-value=7.3e-09 Score=76.66 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=78.4
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcc-cHHHHhcc------------------------------ccEEEe
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQ-DLVTALKR------------------------------GQNARC 48 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~-~~~~~v~~------------------------------G~~v~~ 48 (129)
+|+ +|++++++++|+++++ ++|+++++|+++.+ ++.+.+.+ |+++.+
T Consensus 209 ~G~~~vi~~~~~~~~~~~~~-~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 209 AGASRIIGIDINPDKFELAK-KFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred cCCCeEEEEeCCHHHHHHHH-HcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEE
Confidence 478 7999999999999997 99999999987511 34443322 677777
Q ss_pred cCCC-CCCCC-CC-cceec-c--------cchHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEE
Q 039636 49 SASK-HETPR-EN-CSMWN-D--------LTYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 49 G~~~-~~~~~-~~-~l~~~-~--------~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
|... ..... .. .++.. . ......+.++++++.+|.+++. +..+|+|+++++||+.+.+++. .|++
T Consensus 288 g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~ 366 (368)
T cd08300 288 GVAAAGQEISTRPFQLVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTV 366 (368)
T ss_pred ccCCCCCccccCHHHHhhcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceee
Confidence 7632 11111 00 11110 0 0235677889999999999864 5566899999999999988764 6888
Q ss_pred EE
Q 039636 115 LD 116 (129)
Q Consensus 115 v~ 116 (129)
++
T Consensus 367 ~~ 368 (368)
T cd08300 367 VK 368 (368)
T ss_pred eC
Confidence 74
No 30
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.99 E-value=3.2e-09 Score=76.37 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=84.2
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcc-cHHHHhcc------------------------------ccEEEe
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQ-DLVTALKR------------------------------GQNARC 48 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~-~~~~~v~~------------------------------G~~v~~ 48 (129)
.|| ++|+++.+++|.++++ +||+.+++|+++.. .+.+.+.+ |.-+.+
T Consensus 215 ~GAsrIIgvDiN~~Kf~~ak-~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 215 AGASRIIGVDINPDKFEKAK-EFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred cCcccEEEEecCHHHHHHHH-hcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 477 8999999999999998 99999999987422 36667766 666777
Q ss_pred cCCCCCCC-C--CCcceeccc---------chHHHHHHHHHHHHcCCceeeeeee--cCcccHHHHHHHHHcCCccceEE
Q 039636 49 SASKHETP-R--ENCSMWNDL---------TYSKFLDVVLPLIREGKIVYVEDIV--EGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 49 G~~~~~~~-~--~~~l~~~~~---------~~~~~~~~~~~~~~~g~i~~~~~~~--~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
|....... . ++.++..+. ..+..+..+++.+.++.++....++ .||+++++||+.|.+|+.. |.|
T Consensus 294 Gv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi-R~v 372 (375)
T KOG0022|consen 294 GVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSI-RCV 372 (375)
T ss_pred EecCCCcccccchhhhccccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceE-EEE
Confidence 76222111 1 223444332 4566788899999999987776655 5999999999999998877 777
Q ss_pred EE
Q 039636 115 LD 116 (129)
Q Consensus 115 v~ 116 (129)
+.
T Consensus 373 l~ 374 (375)
T KOG0022|consen 373 LW 374 (375)
T ss_pred Ee
Confidence 65
No 31
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=98.99 E-value=1.3e-08 Score=74.24 Aligned_cols=114 Identities=21% Similarity=0.212 Sum_probs=81.8
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEecC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCSA 50 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G~ 50 (129)
+|++|+++++++++.+.+. ++|+++++++++ .++.+.+.+ |+++.+|.
T Consensus 189 ~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~-~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~ 266 (341)
T cd08297 189 MGLRVIAIDVGDEKLELAK-ELGADAFVDFKK-SDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGL 266 (341)
T ss_pred CCCeEEEEeCCHHHHHHHH-HcCCcEEEcCCC-ccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecC
Confidence 4789999999999999886 899999998876 455444332 66766664
Q ss_pred CCCCCCCCC--cceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 51 SKHETPREN--CSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 51 ~~~~~~~~~--~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
........+ .++.++. ...+.++++++++.++.+.+.+ ..+++++++++++.+..+...||+|+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 267 PPGGFIPLDPFDLVLRGITIVGSLVGTRQDLQEALEFAARGKVKPHI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred CCCCCCCCCHHHHHhcccEEEEeccCCHHHHHHHHHHHHcCCCccee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 211110111 1112221 2257889999999999998755 3589999999999999999999999875
No 32
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=98.96 E-value=1.4e-08 Score=73.37 Aligned_cols=114 Identities=13% Similarity=0.146 Sum_probs=81.5
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+++++++++.+.++ ++|+++++++.+ .++.+.+.+ |+++.+|..
T Consensus 163 ~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~ 240 (324)
T cd08292 163 RGINVINLVRRDAGVAELR-ALGIGPVVSTEQ-PGWQDKVREAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGSM 240 (324)
T ss_pred CCCeEEEEecCHHHHHHHH-hcCCCEEEcCCC-chHHHHHHHHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEecC
Confidence 5889999999999988887 789999998876 566554433 778877752
Q ss_pred CCCCC--C------CC-cceecc---------c-chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccce
Q 039636 52 KHETP--R------EN-CSMWND---------L-TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGK 112 (129)
Q Consensus 52 ~~~~~--~------~~-~l~~~~---------~-~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gk 112 (129)
..... . .+ .+.... + ...+.++++++++.+|.+.+.+..+|+++++.+|++.+.++...||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~~k 320 (324)
T cd08292 241 SGEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLPVEAVFDLGDAAKAAAASMRPGRAGK 320 (324)
T ss_pred CCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCccccEecHHHHHHHHHHHHcCCCCce
Confidence 11110 0 11 111100 0 1245788999999999998665556899999999999998888899
Q ss_pred EEEE
Q 039636 113 QALD 116 (129)
Q Consensus 113 vvv~ 116 (129)
++++
T Consensus 321 vvv~ 324 (324)
T cd08292 321 VLLR 324 (324)
T ss_pred EEeC
Confidence 9863
No 33
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=98.96 E-value=1.3e-08 Score=76.44 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=76.6
Q ss_pred EEEEEeCChHHHHHHHHhc--------CCC-EEEeCCCcccHHHHhcc------------------------------cc
Q 039636 4 YVVGSAGSKEKIERLKNKF--------AFD-DAFNYKEEQDLVTALKR------------------------------GQ 44 (129)
Q Consensus 4 ~Vi~t~~s~~k~~~~~~~l--------Gad-~vi~~~~~~~~~~~v~~------------------------------G~ 44 (129)
+|++++.+++|++.++ ++ |++ +++++++.+++.+.+++ |+
T Consensus 205 ~Vi~~~~~~~r~~~a~-~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~ 283 (410)
T cd08238 205 LLVVTDVNDERLARAQ-RLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGC 283 (410)
T ss_pred eEEEEcCCHHHHHHHH-HhccccccccCceEEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCe
Confidence 7999999999999998 76 776 57776531245444332 56
Q ss_pred EEEecC-CCCC-CCCCC--cceeccc-------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccc
Q 039636 45 NARCSA-SKHE-TPREN--CSMWNDL-------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVG 111 (129)
Q Consensus 45 ~v~~G~-~~~~-~~~~~--~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~G 111 (129)
++.++. .... ....+ .++.++. .....++++++++.+|+|++. +..+|+|+++++|++.+. ++..|
T Consensus 284 ~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~g 362 (410)
T cd08238 284 LNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGNTDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGG 362 (410)
T ss_pred EEEEEccCCCCccccccHHHhhhcCcEEEEeCCCCHHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCc
Confidence 655533 1111 01101 1222221 345678999999999999883 455689999999999999 78889
Q ss_pred eEEEEeC
Q 039636 112 KQALDLD 118 (129)
Q Consensus 112 kvvv~~~ 118 (129)
|+||..+
T Consensus 363 Kvvl~~~ 369 (410)
T cd08238 363 KKLIYTQ 369 (410)
T ss_pred eEEEECC
Confidence 9999874
No 34
>PRK10083 putative oxidoreductase; Provisional
Probab=98.96 E-value=1.1e-08 Score=74.63 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=80.6
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCC
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~ 51 (129)
+|+. |++++++++|.++++ ++|+++++++++ .++.+.+.. |+++.+|..
T Consensus 184 ~G~~~v~~~~~~~~~~~~~~-~~Ga~~~i~~~~-~~~~~~~~~~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 184 YNVKAVIVADRIDERLALAK-ESGADWVINNAQ-EPLGEALEEKGIKPTLIIDAACHPSILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred CCCCEEEEEcCCHHHHHHHH-HhCCcEEecCcc-ccHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 3884 777888888999987 999999998876 555554431 667766652
Q ss_pred CCCCC-CCCcceeccc------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcC-CccceEEEEeCC
Q 039636 52 KHETP-RENCSMWNDL------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSG-RNVGKQALDLDS 119 (129)
Q Consensus 52 ~~~~~-~~~~l~~~~~------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~-~~~Gkvvv~~~~ 119 (129)
+.... ....+..+.. ...+.++++++++.+|.+++. +..+|+++++++|++.+.++ ...||+++.+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~ 339 (339)
T PRK10083 262 SEPSEIVQQGITGKELSIFSSRLNANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE 339 (339)
T ss_pred CCCceecHHHHhhcceEEEEEecChhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 11110 0001111111 235678999999999999873 45568999999999999865 456999998753
No 35
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=98.95 E-value=1.3e-08 Score=75.47 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=77.9
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCC-cccHHHHhcc------------------------------ccEEEe
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKE-EQDLVTALKR------------------------------GQNARC 48 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~-~~~~~~~v~~------------------------------G~~v~~ 48 (129)
+|+ +|++++.+++|++.++ ++|+++++|+++ ..++.+.+++ |+++.+
T Consensus 208 ~G~~~Vi~~~~~~~~~~~a~-~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 208 AKASRIIAIDINPAKFELAK-KLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIII 286 (368)
T ss_pred cCCCeEEEEcCCHHHHHHHH-HhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 478 7999999999999997 999999998763 1233333321 677777
Q ss_pred cCCCC-CCCCCC--cceecc-c--------chHHHHHHHHHHHHcCCcee--eeeeecCcccHHHHHHHHHcCCccceEE
Q 039636 49 SASKH-ETPREN--CSMWND-L--------TYSKFLDVVLPLIREGKIVY--VEDIVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 49 G~~~~-~~~~~~--~l~~~~-~--------~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
|.... .....+ .++... . .....+.++++++.+|.+++ .+..+|+|+++++||+.+.+++. +|++
T Consensus 287 g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~ 365 (368)
T TIGR02818 287 GVAGAGQEISTRPFQLVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTV 365 (368)
T ss_pred eccCCCCcccccHHHHhccceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEE
Confidence 76321 111101 111110 0 12456889999999999864 35556899999999999988764 7999
Q ss_pred EEe
Q 039636 115 LDL 117 (129)
Q Consensus 115 v~~ 117 (129)
|++
T Consensus 366 v~~ 368 (368)
T TIGR02818 366 IHY 368 (368)
T ss_pred eeC
Confidence 874
No 36
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=1.1e-08 Score=73.77 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=79.1
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCc---ccHHHHhcc------------------------------ccEE
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEE---QDLVTALKR------------------------------GQNA 46 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~---~~~~~~v~~------------------------------G~~v 46 (129)
+|| +|+.++-.+.++++++ +|||+.+.+.... +++.+.+.+ |.++
T Consensus 192 ~GA~~VVi~d~~~~Rle~Ak-~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 192 MGASDVVITDLVANRLELAK-KFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred cCCCcEEEeecCHHHHHHHH-HhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEE
Confidence 577 7999999999999998 8999998876541 223333333 6766
Q ss_pred EecCCCCC-CCCCCcceeccc-------chHHHHHHHHHHHHcCCceeeeeee--cCcccHHHHHHHHHcCCcc-ceEEE
Q 039636 47 RCSASKHE-TPRENCSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIV--EGLENAPAALLGLFSGRNV-GKQAL 115 (129)
Q Consensus 47 ~~G~~~~~-~~~~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~--~~l~~~~~a~~~~~~~~~~-Gkvvv 115 (129)
+.|.-... ..+...+..+.. .....+..+++++++|++++...+| |+++++.+||+.+..++.. -|+++
T Consensus 271 lvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i 350 (354)
T KOG0024|consen 271 LVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVII 350 (354)
T ss_pred EeccCCCccccChhhhhhheeeeeeeeeeccccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEE
Confidence 66651111 111111222211 3344789999999999997765554 7999999999999987753 37777
Q ss_pred EeC
Q 039636 116 DLD 118 (129)
Q Consensus 116 ~~~ 118 (129)
...
T Consensus 351 ~~~ 353 (354)
T KOG0024|consen 351 TGP 353 (354)
T ss_pred eCC
Confidence 654
No 37
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=98.94 E-value=2.3e-09 Score=67.86 Aligned_cols=48 Identities=38% Similarity=0.359 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 68 YSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 68 ~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
..+.++++++++.+|.|+|.+..+|||+++++||+++++++..||+||
T Consensus 80 ~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 80 RAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp HHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence 456699999999999999999988999999999999999999999997
No 38
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=98.92 E-value=3.3e-08 Score=72.04 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=81.8
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEecC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCSA 50 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G~ 50 (129)
+|++|+++++++++.++++ ++|+++++++++ .++.+.+.+ |+++.+|.
T Consensus 182 ~g~~v~~~~~s~~~~~~~~-~~g~~~v~~~~~-~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 182 RGARVIVVDIDDERLEFAR-ELGADDTINVGD-EDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred cCCeEEEECCCHHHHHHHH-HhCCCEEecCcc-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcC
Confidence 4889999998999999887 899999999886 555555432 66666654
Q ss_pred CCCCCC-C------CC-cceecccchHHHHHHHHHHHHcCCcee--eeeeecCcccHHHHHHHHHcC-CccceEEEEe
Q 039636 51 SKHETP-R------EN-CSMWNDLTYSKFLDVVLPLIREGKIVY--VEDIVEGLENAPAALLGLFSG-RNVGKQALDL 117 (129)
Q Consensus 51 ~~~~~~-~------~~-~l~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~-~~~Gkvvv~~ 117 (129)
.+.... . .+ .+........+.++++++++.+|.+++ .+..+++++++.+|++.+.++ ...||+|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~ 337 (337)
T cd08261 260 SKGPVTFPDPEFHKKELTILGSRNATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337 (337)
T ss_pred CCCCCccCHHHHHhCCCEEEEeccCChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 211100 0 00 111111144567888999999999987 555668999999999999988 4789999864
No 39
>PLN02740 Alcohol dehydrogenase-like
Probab=98.92 E-value=2.1e-08 Score=74.68 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=78.4
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCc-ccHHHHhcc------------------------------ccEEEe
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEE-QDLVTALKR------------------------------GQNARC 48 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~-~~~~~~v~~------------------------------G~~v~~ 48 (129)
+|+ +|++++++++|+++++ ++|+++++|+++. .++.+.+++ |+++.+
T Consensus 221 ~G~~~Vi~~~~~~~r~~~a~-~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 221 RGASKIIGVDINPEKFEKGK-EMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCCCcEEEEcCChHHHHHHH-HcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEE
Confidence 478 6999999999999998 9999999987651 135544432 567777
Q ss_pred cCCCCCC-CCCC--ccee-ccc--------chHHHHHHHHHHHHcCCcee--eeeeecCcccHHHHHHHHHcCCccceEE
Q 039636 49 SASKHET-PREN--CSMW-NDL--------TYSKFLDVVLPLIREGKIVY--VEDIVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 49 G~~~~~~-~~~~--~l~~-~~~--------~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
|...... ...+ .++. ..+ .....+.++++++.+|.+++ .+..+|+|+++++|++.+.+++. .|++
T Consensus 300 G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~ 378 (381)
T PLN02740 300 GIHPTPKMLPLHPMELFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCL 378 (381)
T ss_pred ccCCCCceecccHHHHhcCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEE
Confidence 7622111 1100 1111 011 11356789999999999865 35556899999999999998765 5998
Q ss_pred EEe
Q 039636 115 LDL 117 (129)
Q Consensus 115 v~~ 117 (129)
|.+
T Consensus 379 ~~~ 381 (381)
T PLN02740 379 LHL 381 (381)
T ss_pred EeC
Confidence 863
No 40
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=98.90 E-value=3.9e-08 Score=70.95 Aligned_cols=114 Identities=23% Similarity=0.185 Sum_probs=82.0
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+++++++++.+.++ .+|+++++++.+ .++.+.+.+ |+++.+|..
T Consensus 166 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~ 243 (324)
T cd08244 166 AGATVVGAAGGPAKTALVR-ALGADVAVDYTR-PDWPDQVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRFLTYGWA 243 (324)
T ss_pred CCCEEEEEeCCHHHHHHHH-HcCCCEEEecCC-ccHHHHHHHHcCCCCceEEEECCChHhHHHHHHHhccCcEEEEEecC
Confidence 4889999999999999886 899999998776 555554432 778877752
Q ss_pred CCCC-C-C------CC-cceeccc------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 52 KHET-P-R------EN-CSMWNDL------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 52 ~~~~-~-~------~~-~l~~~~~------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
+... . . .+ .+..... ...+.++++++++.++.+.+.+...++++++++|++.+.+++..||+|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 323 (324)
T cd08244 244 SGEWTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVPVVGQTFPLERAAEAHAALEARSTVGKVLLL 323 (324)
T ss_pred CCCCCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccCccceEEeHHHHHHHHHHHHcCCCCceEEEe
Confidence 1111 0 0 11 1111000 23567888999999999987665668999999999999999999999975
No 41
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.90 E-value=2.6e-08 Score=73.09 Aligned_cols=115 Identities=15% Similarity=0.213 Sum_probs=79.7
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|+ .|+++++++++.++++ ++|+++++++.+ .++.+.+.+ |+++.+|
T Consensus 189 ~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~~-~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 189 RGAGRIIAVGSRPNRVELAK-EYGATDIVDYKN-GDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred cCCCeEEEEeCCHHHHHHHH-HcCCceEecCCC-CCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEec
Confidence 477 5899989998999987 899999998876 555444332 7787777
Q ss_pred CCCCCC-CCCC--cc---e-eccc------chHHHHHHHHHHHHcCCcee---eeeeecCcccHHHHHHHHHcCC-ccce
Q 039636 50 ASKHET-PREN--CS---M-WNDL------TYSKFLDVVLPLIREGKIVY---VEDIVEGLENAPAALLGLFSGR-NVGK 112 (129)
Q Consensus 50 ~~~~~~-~~~~--~l---~-~~~~------~~~~~~~~~~~~~~~g~i~~---~~~~~~~l~~~~~a~~~~~~~~-~~Gk 112 (129)
..+... ...+ .+ + .... ...+.++++++++.+|.|++ .+..+++|+++++|++.+.+++ ..+|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k 346 (351)
T cd08285 267 YYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIK 346 (351)
T ss_pred ccCCCceeecChhhhhhhccccEEEEeecCCccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEE
Confidence 622211 0000 00 0 0000 23467888999999999988 3334589999999999999987 4789
Q ss_pred EEEEe
Q 039636 113 QALDL 117 (129)
Q Consensus 113 vvv~~ 117 (129)
++|++
T Consensus 347 ~~~~~ 351 (351)
T cd08285 347 PVIIF 351 (351)
T ss_pred EEEeC
Confidence 99864
No 42
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=98.90 E-value=4.4e-08 Score=73.04 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=78.4
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcc----------------------cHHHHhcc----------------
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQ----------------------DLVTALKR---------------- 42 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~----------------------~~~~~v~~---------------- 42 (129)
+|++++++++++++.+.++ ++|+++++++++ . .+.+.+.+
T Consensus 217 ~G~~vv~~~~s~~~~~~~~-~~G~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g 294 (393)
T cd08246 217 AGANPVAVVSSEEKAEYCR-ALGAEGVINRRD-FDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPG 294 (393)
T ss_pred cCCeEEEEeCCHHHHHHHH-HcCCCEEEcccc-cccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCc
Confidence 4888899999999999998 899999998643 1 12222211
Q ss_pred --------------ccEEEecCCCCCCCCCC--cceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHH
Q 039636 43 --------------GQNARCSASKHETPREN--CSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPA 99 (129)
Q Consensus 43 --------------G~~v~~G~~~~~~~~~~--~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~ 99 (129)
|+++.+|.........+ .++..+. ...+.+.++++++.+|.+.+.+..+++++++++
T Consensus 295 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 374 (393)
T cd08246 295 RATFPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFANDREAAEANRLVMKGRIDPCLSKVFSLDETPD 374 (393)
T ss_pred hHhHHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecccCcHHHHHHHHHHHHcCCceeeeeEEEeHHHHHH
Confidence 67777764211111000 1211111 234567889999999999877666789999999
Q ss_pred HHHHHHcC-CccceEEEE
Q 039636 100 ALLGLFSG-RNVGKQALD 116 (129)
Q Consensus 100 a~~~~~~~-~~~Gkvvv~ 116 (129)
|++.+.++ +..||+|+-
T Consensus 375 a~~~~~~~~~~~gkvvv~ 392 (393)
T cd08246 375 AHQLMHRNQHHVGNMAVL 392 (393)
T ss_pred HHHHHHhCccccceEEEe
Confidence 99999999 789999874
No 43
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=98.90 E-value=2.3e-08 Score=73.04 Aligned_cols=113 Identities=19% Similarity=0.076 Sum_probs=78.9
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-------------------------ccEEEecCCCCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-------------------------GQNARCSASKHET 55 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-------------------------G~~v~~G~~~~~~ 55 (129)
+|++|+++++++++.+.++ ++|+++++++.. .++...... |+++.+|......
T Consensus 192 ~G~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~-~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~ 269 (337)
T cd05283 192 LGAEVTAFSRSPSKKEDAL-KLGADEFIATKD-PEAMKKAAGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPL 269 (337)
T ss_pred cCCeEEEEcCCHHHHHHHH-HcCCcEEecCcc-hhhhhhccCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCC
Confidence 4789999999999999987 899999887664 333222111 7777776521111
Q ss_pred -CCCCcceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 56 -PRENCSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 56 -~~~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
.....++.+.. ...+.++++++++.+|.+++.+ .+++++++++||+.+.+++..||+|++
T Consensus 270 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~ 337 (337)
T cd05283 270 PVPPFPLIFGRKSVAGSLIGGRKETQEMLDFAAEHGIKPWV-EVIPMDGINEALERLEKGDVRYRFVLD 337 (337)
T ss_pred ccCHHHHhcCceEEEEecccCHHHHHHHHHHHHhCCCccce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence 00001121111 3456789999999999998765 358999999999999999999999874
No 44
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=98.89 E-value=4.9e-08 Score=73.01 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=80.4
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCccc----------------------HHHHhcc----------------
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQD----------------------LVTALKR---------------- 42 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~----------------------~~~~v~~---------------- 42 (129)
+|++|++++.++++.+.++ ++|+++++|+++ .+ +.+.+.+
T Consensus 213 ~G~~vi~~~~~~~~~~~~~-~~g~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~ 290 (398)
T TIGR01751 213 GGGNPVAVVSSPEKAEYCR-ELGAEAVIDRND-FGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGR 290 (398)
T ss_pred cCCeEEEEcCCHHHHHHHH-HcCCCEEecCCC-cchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcH
Confidence 4888888888999999998 899999998753 21 2222221
Q ss_pred -------------ccEEEecCCCCCCCC--CCcceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHH
Q 039636 43 -------------GQNARCSASKHETPR--ENCSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAA 100 (129)
Q Consensus 43 -------------G~~v~~G~~~~~~~~--~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a 100 (129)
|+++.+|........ ...++..+. .....++++++++.++.+.+.+..++++++++++
T Consensus 291 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a 370 (398)
T TIGR01751 291 ATFPTSVFVCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFANLREAWEANRLVAKGRIDPTLSKVYPLEEIGQA 370 (398)
T ss_pred HHHHHHHHhhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccccCcHHHHHHHHHHHHCCCcccceeeEEcHHHHHHH
Confidence 777777752111100 001111111 2223467899999999998776667899999999
Q ss_pred HHHHHcCCccceEEEEeC
Q 039636 101 LLGLFSGRNVGKQALDLD 118 (129)
Q Consensus 101 ~~~~~~~~~~Gkvvv~~~ 118 (129)
++.+.+++..||+|+++.
T Consensus 371 ~~~~~~~~~~gkvvv~~~ 388 (398)
T TIGR01751 371 HQDVHRNHHQGNVAVLVL 388 (398)
T ss_pred HHHHHcCCCCceEEEEeC
Confidence 999999999999999985
No 45
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=98.89 E-value=3.2e-08 Score=72.00 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=80.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSASK 52 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~~ 52 (129)
+|++|+++++++++.+.++ ++|++.+++++...++.+.+++ |+++.+|...
T Consensus 186 ~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~ 264 (338)
T PRK09422 186 FNAKVIAVDINDDKLALAK-EVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPP 264 (338)
T ss_pred CCCeEEEEeCChHHHHHHH-HcCCcEEecccccccHHHHHHHhcCCCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCC
Confidence 3889999999999999997 9999999987531233333321 6677666421
Q ss_pred CCCC-CCCcceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 53 HETP-RENCSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 53 ~~~~-~~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
.... ....+..+.. ...+.++++++++.+|.+.+.+. +++++++++|++.+.++...||+++.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~v~-~~~~~~~~~a~~~~~~~~~~gkvvv~~ 336 (338)
T PRK09422 265 ESMDLSIPRLVLDGIEVVGSLVGTRQDLEEAFQFGAEGKVVPKVQ-LRPLEDINDIFDEMEQGKIQGRMVIDF 336 (338)
T ss_pred CCceecHHHHhhcCcEEEEecCCCHHHHHHHHHHHHhCCCCccEE-EEcHHHHHHHHHHHHcCCccceEEEec
Confidence 1100 0000111111 24567899999999999977654 479999999999999999999999875
No 46
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=98.86 E-value=9.5e-08 Score=69.25 Aligned_cols=114 Identities=22% Similarity=0.232 Sum_probs=80.7
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+++++++++.+.++ ++|+++++++.. .++.+.+++ |+++.+|..
T Consensus 164 ~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~ 241 (327)
T PRK10754 164 LGAKLIGTVGSAQKAQRAK-KAGAWQVINYRE-ENIVERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRRGLMVSFGNA 241 (327)
T ss_pred cCCEEEEEeCCHHHHHHHH-HCCCCEEEcCCC-CcHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHhccCCEEEEEccC
Confidence 4889999999999999997 899999998776 556555443 778777752
Q ss_pred CCCCC--C-----CC-cceeccc----------chHHHHHHHHHHHHcCCceeee--eeecCcccHHHHHHHHHcCCccc
Q 039636 52 KHETP--R-----EN-CSMWNDL----------TYSKFLDVVLPLIREGKIVYVE--DIVEGLENAPAALLGLFSGRNVG 111 (129)
Q Consensus 52 ~~~~~--~-----~~-~l~~~~~----------~~~~~~~~~~~~~~~g~i~~~~--~~~~~l~~~~~a~~~~~~~~~~G 111 (129)
..... . .+ .+..... ...+.++++++++.+|.+++.. ..+++++++.+|++.+.++...|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 321 (327)
T PRK10754 242 SGPVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQG 321 (327)
T ss_pred CCCCCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcc
Confidence 11110 0 00 0111000 2344567789999999998653 34589999999999999999999
Q ss_pred eEEEE
Q 039636 112 KQALD 116 (129)
Q Consensus 112 kvvv~ 116 (129)
|+|+.
T Consensus 322 ~~~~~ 326 (327)
T PRK10754 322 SSLLI 326 (327)
T ss_pred eEEEe
Confidence 99984
No 47
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=98.86 E-value=4.3e-08 Score=70.65 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=82.0
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+++++++++.+.++ ++|+++++++.. .++.+.+.+ |+++.+|..
T Consensus 162 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~ 239 (323)
T cd05282 162 LGFKTINVVRRDEQVEELK-ALGADEVIDSSP-EDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLL 239 (323)
T ss_pred CCCeEEEEecChHHHHHHH-hcCCCEEecccc-hhHHHHHHHHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccC
Confidence 4889999999999999997 899999998875 455555442 778777752
Q ss_pred CCCC--CC------CC-cceec---------cc-chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccce
Q 039636 52 KHET--PR------EN-CSMWN---------DL-TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGK 112 (129)
Q Consensus 52 ~~~~--~~------~~-~l~~~---------~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gk 112 (129)
+... .. .+ .+... ++ ...+.++++++++.+|.+.+.+..+++++++.+|++.+..++..||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~k 319 (323)
T cd05282 240 SGEPVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAEQPGRGGK 319 (323)
T ss_pred CCCCCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccCccceecHHHHHHHHHHHhcCCCCce
Confidence 1111 00 01 11110 01 2245788899999999998775566899999999999999888899
Q ss_pred EEEE
Q 039636 113 QALD 116 (129)
Q Consensus 113 vvv~ 116 (129)
+|++
T Consensus 320 vv~~ 323 (323)
T cd05282 320 VLLT 323 (323)
T ss_pred EeeC
Confidence 9864
No 48
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=98.81 E-value=7.1e-08 Score=70.26 Aligned_cols=111 Identities=21% Similarity=0.213 Sum_probs=78.4
Q ss_pred C-cEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEecC
Q 039636 2 G-CYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCSA 50 (129)
Q Consensus 2 G-a~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G~ 50 (129)
| ++|+++++++++.+.++ ++|++++++++. . +.+.+.+ |+++.+|.
T Consensus 191 g~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~-~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 191 TPATVIAVDRSEEALKLAE-RLGADHVLNASD-D-VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred CCCcEEEEeCCHHHHHHHH-HhCCcEEEcCCc-c-HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcC
Confidence 6 78999999999999887 899999998876 4 5444432 66666664
Q ss_pred CCCCCCCCCcceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 51 SKHETPRENCSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 51 ~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
.+........++.++. ...+.++++++++.+|.+++.+. .++++++++|++.+.+++..||+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~-~~~~~~~~~a~~~~~~~~~~gkvv~~ 339 (340)
T cd05284 268 GGHGRLPTSDLVPTEISVIGSLWGTRAELVEVVALAESGKVKVEIT-KFPLEDANEALDRLREGRVTGRAVLV 339 (340)
T ss_pred CCCCccCHHHhhhcceEEEEEecccHHHHHHHHHHHHhCCCCcceE-EEeHHHHHHHHHHHHcCCccceEEec
Confidence 2211100001011111 24567888999999999987544 48999999999999999999999875
No 49
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=98.81 E-value=1e-07 Score=69.85 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=79.5
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecC
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSA 50 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~ 50 (129)
+|+ +|+++++++++.+.+. ++|++.++++++ .++.+.+.+ |+++.+|.
T Consensus 198 ~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 198 LGPANIIVVDIDEAKLEAAK-AAGADVVVNGSD-PDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred cCCCeEEEEeCCHHHHHHHH-HhCCcEEecCCC-ccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECC
Confidence 478 7889988999999987 899998888765 444333321 67776665
Q ss_pred CCCCCCC-------CC-cceecccchHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 51 SKHETPR-------EN-CSMWNDLTYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 51 ~~~~~~~-------~~-~l~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
.+..... .+ .+........+.+.++++++.+|.+++.+..+++++++.+|++.+..++..||++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 349 (350)
T cd08240 276 FGGEATLPLPLLPLRALTIQGSYVGSLEELRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLK 349 (350)
T ss_pred CCCCCcccHHHHhhcCcEEEEcccCCHHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence 2211110 00 111101123467888999999999987655678999999999999999999999875
No 50
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=98.80 E-value=4.8e-08 Score=71.91 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=73.2
Q ss_pred CCcEEEEEeC---ChHHHHHHHHhcCCCEEEeCCCcccHHH----------------------Hhc---c-ccEEEecCC
Q 039636 1 MGCYVVGSAG---SKEKIERLKNKFAFDDAFNYKEEQDLVT----------------------ALK---R-GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~---s~~k~~~~~~~lGad~vi~~~~~~~~~~----------------------~v~---~-G~~v~~G~~ 51 (129)
+|++|+++++ +++|+++++ ++|+++ +++.+ +++.+ .+. . |+++.+|..
T Consensus 195 ~G~~vi~~~~~~~~~~~~~~~~-~~Ga~~-v~~~~-~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 195 RGFEVYVLNRRDPPDPKADIVE-ELGATY-VNSSK-TPVAEVKLVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred cCCeEEEEecCCCCHHHHHHHH-HcCCEE-ecCCc-cchhhhhhcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence 4789999987 678889887 999986 45554 33322 000 0 888888873
Q ss_pred CC-CCCC-C----C-cceeccc-------chHHHHHHHHHHHHcCC------ceeeeeeecCcccHHHHHHHHHcCCccc
Q 039636 52 KH-ETPR-E----N-CSMWNDL-------TYSKFLDVVLPLIREGK------IVYVEDIVEGLENAPAALLGLFSGRNVG 111 (129)
Q Consensus 52 ~~-~~~~-~----~-~l~~~~~-------~~~~~~~~~~~~~~~g~------i~~~~~~~~~l~~~~~a~~~~~~~~~~G 111 (129)
.. .... . . .++.++. ...+.++++++++.++. +++.+..+|+|+++++||+.+.++. +
T Consensus 272 ~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~ 349 (355)
T cd08230 272 GGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--I 349 (355)
T ss_pred CCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC--e
Confidence 22 1111 1 0 1222222 23456788889988776 5666667799999999999887654 6
Q ss_pred eEEEEe
Q 039636 112 KQALDL 117 (129)
Q Consensus 112 kvvv~~ 117 (129)
|+||++
T Consensus 350 K~v~~~ 355 (355)
T cd08230 350 KVVIEW 355 (355)
T ss_pred EEEeeC
Confidence 999864
No 51
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=98.80 E-value=1.1e-07 Score=68.82 Aligned_cols=118 Identities=22% Similarity=0.221 Sum_probs=81.9
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCccc-HHHHhcc-----------------------------ccEEEecC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQD-LVTALKR-----------------------------GQNARCSA 50 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~-~~~~v~~-----------------------------G~~v~~G~ 50 (129)
+|++++.+++++++.+.++ ++|+++++++.. .+ +.+.+.+ |+++.+|.
T Consensus 164 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~i~~~~ 241 (334)
T PTZ00354 164 YGAATIITTSSEEKVDFCK-KLAAIILIRYPD-EEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGF 241 (334)
T ss_pred cCCEEEEEeCCHHHHHHHH-HcCCcEEEecCC-hhHHHHHHHHHhCCCCceEEEECCchHHHHHHHHHhccCCeEEEEec
Confidence 4788888888999999997 899999998765 33 4444332 77777765
Q ss_pred CCCCC---CCCCcceecc-----------c------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCcc
Q 039636 51 SKHET---PRENCSMWND-----------L------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNV 110 (129)
Q Consensus 51 ~~~~~---~~~~~l~~~~-----------~------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~ 110 (129)
..... .....++.++ . ...+.++++++++.+|.+.+.+...+++++++++++.+..++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (334)
T PTZ00354 242 MGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNKNI 321 (334)
T ss_pred CCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhCCCC
Confidence 21111 1000111111 0 12355678889999999987665668999999999999998888
Q ss_pred ceEEEEeCCC
Q 039636 111 GKQALDLDSC 120 (129)
Q Consensus 111 Gkvvv~~~~~ 120 (129)
||+|+.+.+.
T Consensus 322 ~kvvv~~~~~ 331 (334)
T PTZ00354 322 GKVVLTVNEP 331 (334)
T ss_pred ceEEEecCCC
Confidence 9999988543
No 52
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=98.79 E-value=7.4e-08 Score=70.36 Aligned_cols=115 Identities=18% Similarity=0.213 Sum_probs=76.4
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|+ +|+++++++++.++++ ++|+++++++++ .++.+.+.+ |+++.+|
T Consensus 186 ~G~~~v~~~~~~~~~~~~~~-~lg~~~~~~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 186 VGARHVVITDVNEYRLELAR-KMGATRAVNVAK-EDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred cCCCEEEEEcCCHHHHHHHH-HhCCcEEecCcc-ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence 477 6888888888888887 899999998876 556555432 6666665
Q ss_pred CCCCCCCCCC-cceeccc--------chHHHHHHHHHHHHcC-CceeeeeeecCcccHHHHHHHHHcCCccceEEEEeC
Q 039636 50 ASKHETPREN-CSMWNDL--------TYSKFLDVVLPLIREG-KIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDLD 118 (129)
Q Consensus 50 ~~~~~~~~~~-~l~~~~~--------~~~~~~~~~~~~~~~g-~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~~ 118 (129)
.......... .++.+.. ...+.+..+++++.++ .+.+.+..+++++++.+|++.+..++ .||+|++++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-~gk~vv~~~ 341 (341)
T PRK05396 264 IPPGDMAIDWNKVIFKGLTIKGIYGREMFETWYKMSALLQSGLDLSPIITHRFPIDDFQKGFEAMRSGQ-SGKVILDWD 341 (341)
T ss_pred cCCCCCcccHHHHhhcceEEEEEEccCccchHHHHHHHHHcCCChhHheEEEEeHHHHHHHHHHHhcCC-CceEEEecC
Confidence 4211110000 1111110 2234556788899888 45555555689999999999999877 899998764
No 53
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=98.78 E-value=1.2e-07 Score=70.15 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=75.7
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCc-ccHHHHhcc------------------------------ccEEEe
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEE-QDLVTALKR------------------------------GQNARC 48 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~-~~~~~~v~~------------------------------G~~v~~ 48 (129)
+|+ +|++++++++|++.++ ++|+++++++.+. .++.+.+++ |+++.+
T Consensus 207 ~G~~~Vi~~~~~~~~~~~~~-~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 207 AGASRIIGVDINEDKFEKAK-EFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred cCCCeEEEEeCCHHHHHHHH-HcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEE
Confidence 477 7999999999999997 8999999987541 122333221 677777
Q ss_pred cCCCCCCCC--CCccee-ccc--------chHHHHHHHHHHHHcCCcee--eeeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 49 SASKHETPR--ENCSMW-NDL--------TYSKFLDVVLPLIREGKIVY--VEDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 49 G~~~~~~~~--~~~l~~-~~~--------~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
|........ ...++. .++ .....++++++++.+|.+++ .+..+|+|+++++||+.+.+++ ..|+++
T Consensus 286 g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~k~~i 364 (365)
T cd08277 286 GVPPGAELSIRPFQLILGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGE-CIRTVI 364 (365)
T ss_pred cCCCccccccCHhHHhhCCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCC-CceEee
Confidence 752211111 111211 111 12446789999999998654 4556689999999999999877 568876
Q ss_pred E
Q 039636 116 D 116 (129)
Q Consensus 116 ~ 116 (129)
+
T Consensus 365 ~ 365 (365)
T cd08277 365 T 365 (365)
T ss_pred C
Confidence 3
No 54
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.77 E-value=2e-07 Score=67.42 Aligned_cols=116 Identities=22% Similarity=0.194 Sum_probs=80.6
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|++++.++++.+.++ ++|+++++++....++.+.+.+ |+++.+|..
T Consensus 183 ~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~G~~v~~g~~ 261 (336)
T cd08276 183 AGARVIATSSSDEKLERAK-ALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFL 261 (336)
T ss_pred cCCEEEEEeCCHHHHHHHH-HcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEECCChHHHHHHHHhhcCCCEEEEEccC
Confidence 4889999999999999998 7899999886531234444332 777777652
Q ss_pred CCCCCCCC--cceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 52 KHETPREN--CSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 52 ~~~~~~~~--~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
.......+ .++.++. .....++++.+++.++.+.+.....+++++++++++.+.++...||+++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 336 (336)
T cd08276 262 SGFEAPVLLLPLLTKGATLRGIAVGSRAQFEAMNRAIEAHRIRPVIDRVFPFEEAKEAYRYLESGSHFGKVVIRV 336 (336)
T ss_pred CCCccCcCHHHHhhcceEEEEEecCcHHHHHHHHHHHHcCCcccccCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 11110000 1111111 335678889999999988776555689999999999999998899999863
No 55
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=98.77 E-value=1.1e-07 Score=69.39 Aligned_cols=114 Identities=21% Similarity=0.218 Sum_probs=77.0
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|++ |+++.+++++.+.++ .+|+++++++.+ .++.+.+.+ |+++.+|
T Consensus 184 ~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~~-~~~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 184 SGAYPVIVSDPNEYRLELAK-KMGATYVVNPFK-EDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred cCCcEEEEECCCHHHHHHHH-HhCCcEEEcccc-cCHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEc
Confidence 4775 888878888888887 899999998765 555544422 6677666
Q ss_pred CCCCCCC-C-CCcceeccc--------chHHHHHHHHHHHHcCCce--eeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 50 ASKHETP-R-ENCSMWNDL--------TYSKFLDVVLPLIREGKIV--YVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 50 ~~~~~~~-~-~~~l~~~~~--------~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
....... . ...++.+.. ...+.+.++++++.+|.++ +.+...++++++.++++.+.+++ .||+|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~gkvvv~~ 340 (340)
T TIGR00692 262 LPPGKVTIDFTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQ-TGKVILSL 340 (340)
T ss_pred cCCCCcccchhhhhhhcceEEEEEecCCchhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCC-CceEEEeC
Confidence 4211100 0 001111111 2345678899999999986 34445689999999999999887 49999864
No 56
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=98.76 E-value=1e-07 Score=69.04 Aligned_cols=114 Identities=44% Similarity=0.666 Sum_probs=80.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSASK 52 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~~ 52 (129)
+|++|+++++++++.+.+++.+|+++++++++ .++.+.+.+ |+++.+|...
T Consensus 169 ~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~ 247 (329)
T cd05288 169 LGARVVGIAGSDEKCRWLVEELGFDAAINYKT-PDLAEALKEAAPDGIDVYFDNVGGEILDAALTLLNKGGRIALCGAIS 247 (329)
T ss_pred cCCEEEEEeCCHHHHHHHHhhcCCceEEecCC-hhHHHHHHHhccCCceEEEEcchHHHHHHHHHhcCCCceEEEEeecc
Confidence 47899999999999998872399999999876 555444331 7888887521
Q ss_pred CC-C--C-----C-----CC-cceeccc-----chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceE
Q 039636 53 HE-T--P-----R-----EN-CSMWNDL-----TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQ 113 (129)
Q Consensus 53 ~~-~--~-----~-----~~-~l~~~~~-----~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkv 113 (129)
.. . + . .+ .+..... ...+.+.++++++.+|.+++....+++++++.++++.+.+++..||+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkv 327 (329)
T cd05288 248 QYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDVVEGLENAPEAFLGLFTGKNTGKL 327 (329)
T ss_pred CcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccccccccHHHHHHHHHHHhcCCCccce
Confidence 11 0 0 0 00 1111001 12457888999999999987755668999999999999998888998
Q ss_pred EE
Q 039636 114 AL 115 (129)
Q Consensus 114 vv 115 (129)
|+
T Consensus 328 vv 329 (329)
T cd05288 328 VV 329 (329)
T ss_pred eC
Confidence 74
No 57
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=98.75 E-value=1.2e-07 Score=69.88 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=74.2
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHH---HHhcc------------------------------ccEE
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLV---TALKR------------------------------GQNA 46 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~---~~v~~------------------------------G~~v 46 (129)
+|+ +|+++++++++.++++ ++|+++++++++ .++. +.+.+ |+++
T Consensus 200 ~G~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~-~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v 277 (361)
T cd08231 200 AGARRVIVIDGSPERLELAR-EFGADATIDIDE-LPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYV 277 (361)
T ss_pred cCCCeEEEEcCCHHHHHHHH-HcCCCeEEcCcc-cccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEE
Confidence 478 8999999999999887 899999998764 3221 22222 7777
Q ss_pred EecCCCCC-CCCCC--cceeccc-------chHHHHHHHHHHHHcC--Cc--eeeeeeecCcccHHHHHHHHHcCCccce
Q 039636 47 RCSASKHE-TPREN--CSMWNDL-------TYSKFLDVVLPLIREG--KI--VYVEDIVEGLENAPAALLGLFSGRNVGK 112 (129)
Q Consensus 47 ~~G~~~~~-~~~~~--~l~~~~~-------~~~~~~~~~~~~~~~g--~i--~~~~~~~~~l~~~~~a~~~~~~~~~~Gk 112 (129)
.+|..+.. ....+ .++.+.. ...+.++++++++.++ .+ .+.+..+|+++++++||+.+.++. .+|
T Consensus 278 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~~k 356 (361)
T cd08231 278 LVGSVAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGT-ALK 356 (361)
T ss_pred EEcCCCCCCccccCHHHHhhcccEEEEcccCCchhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCC-ceE
Confidence 77652211 10000 1111111 2344577888888877 43 345556689999999999998876 489
Q ss_pred EEEE
Q 039636 113 QALD 116 (129)
Q Consensus 113 vvv~ 116 (129)
+||+
T Consensus 357 ~vi~ 360 (361)
T cd08231 357 VVID 360 (361)
T ss_pred EEeC
Confidence 9985
No 58
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=98.74 E-value=1.8e-07 Score=69.21 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=75.8
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCc-ccHHHHhcc------------------------------ccEEEe
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEE-QDLVTALKR------------------------------GQNARC 48 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~-~~~~~~v~~------------------------------G~~v~~ 48 (129)
+|+ +|+++++++++.++++ ++|++.++++.+. +++.+.+++ |+++.+
T Consensus 210 ~G~~~vi~~~~~~~~~~~~~-~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 210 RGASRIIGVDLNPSKFEQAK-KFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred cCCCeEEEEcCCHHHHHHHH-HcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEE
Confidence 477 7999999999999997 9999999987541 123333321 577777
Q ss_pred cCCCCC-CCCCC--cceeccc----------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceE
Q 039636 49 SASKHE-TPREN--CSMWNDL----------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQ 113 (129)
Q Consensus 49 G~~~~~-~~~~~--~l~~~~~----------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkv 113 (129)
|..... ....+ .++ ++. .....++++++++.+|.+++. +..+|||+++++||+.+.+++.. |+
T Consensus 289 g~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~ 366 (369)
T cd08301 289 GVPHKDAVFSTHPMNLL-NGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECL-RC 366 (369)
T ss_pred CcCCCCcccccCHHHHh-cCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCce-eE
Confidence 763211 11101 111 111 224568899999999988653 45568999999999999998764 88
Q ss_pred EE
Q 039636 114 AL 115 (129)
Q Consensus 114 vv 115 (129)
+|
T Consensus 367 ~~ 368 (369)
T cd08301 367 IL 368 (369)
T ss_pred Ee
Confidence 76
No 59
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=98.73 E-value=3e-07 Score=65.57 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=79.8
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+++++++++.+.++ ++|+++++++.. .++.+.+.+ |+++.+|..
T Consensus 160 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~ 237 (320)
T cd05286 160 LGATVIGTVSSEEKAELAR-AAGADHVINYRD-EDFVERVREITGGRGVDVVYDGVGKDTFEGSLDSLRPRGTLVSFGNA 237 (320)
T ss_pred cCCEEEEEcCCHHHHHHHH-HCCCCEEEeCCc-hhHHHHHHHHcCCCCeeEEEECCCcHhHHHHHHhhccCcEEEEEecC
Confidence 4789999999999999987 899999988765 445444332 777777651
Q ss_pred CCCCCC--------CC-cceec-------cc-chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEE
Q 039636 52 KHETPR--------EN-CSMWN-------DL-TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 52 ~~~~~~--------~~-~l~~~-------~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
...... .+ .+... .+ ...+.++++++++.++.+.+.+...++++++++|++.+..+...||++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv 317 (320)
T cd05286 238 SGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQAHRDLESRKTTGKLL 317 (320)
T ss_pred CCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCcccceEcHHHHHHHHHHHHcCCCCceEE
Confidence 111100 01 11100 01 234567788999999999876555689999999999999998899998
Q ss_pred EE
Q 039636 115 LD 116 (129)
Q Consensus 115 v~ 116 (129)
++
T Consensus 318 ~~ 319 (320)
T cd05286 318 LI 319 (320)
T ss_pred Ee
Confidence 74
No 60
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=98.73 E-value=2.1e-07 Score=68.78 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=78.8
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|+. |+++++++++.+.++ ++|++.++++++ .++.+.+++ |+++.+|
T Consensus 210 ~G~~~vi~~~~s~~~~~~~~-~~g~~~v~~~~~-~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 210 FGASPIIAVDVRDEKLAKAK-ELGATHTVNAAK-EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred cCCCeEEEEeCCHHHHHHHH-HhCCceEecCCc-ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 4676 898988999999887 899999998876 555443332 6777776
Q ss_pred CCCCC-CCCCC--cceeccc--------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 50 ASKHE-TPREN--CSMWNDL--------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 50 ~~~~~-~~~~~--~l~~~~~--------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
..... ....+ .++.+.. ...+.++++++++.+|.+.+. +...++++++.+|++.+.+++..||+||.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 367 (367)
T cd08263 288 LAPGGATAEIPITRLVRRGIKIIGSYGARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367 (367)
T ss_pred cCCCCCccccCHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence 41111 00000 1111111 224678899999999999874 33458999999999999999989999873
No 61
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.72 E-value=2.9e-07 Score=67.22 Aligned_cols=112 Identities=22% Similarity=0.221 Sum_probs=76.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSASK 52 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~~ 52 (129)
+|++|+++++++ +.+.++ ++|++++++... ..+.+ ... |+++.+|...
T Consensus 201 ~g~~vi~~~~~~-~~~~~~-~~g~~~~~~~~~-~~~~~-~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~ 276 (350)
T cd08274 201 RGAIVIAVAGAA-KEEAVR-ALGADTVILRDA-PLLAD-AKALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIA 276 (350)
T ss_pred cCCEEEEEeCch-hhHHHH-hcCCeEEEeCCC-ccHHH-HHhhCCCCCcEEEecCCHHHHHHHHHHhccCCEEEEecccC
Confidence 488999998765 778887 899987666543 22222 110 7787777521
Q ss_pred CCCCCCC--cceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 53 HETPREN--CSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 53 ~~~~~~~--~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
......+ .++.++. .....+.++++++.+|.+++.+..+++++++.+|++.+..+...||+|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~ 349 (350)
T cd08274 277 GPVVELDLRTLYLKDLTLFGSTLGTREVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLV 349 (350)
T ss_pred CccccCCHHHhhhcceEEEEeecCCHHHHHHHHHHHHCCCcccccccccCHHHHHHHHHHHhcCCCceEEEEe
Confidence 1100001 1122211 34567899999999999987765668999999999999998889999875
No 62
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=98.69 E-value=5.4e-07 Score=65.01 Aligned_cols=114 Identities=16% Similarity=0.231 Sum_probs=74.5
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCccc--HHHHhcc-------------------------ccEEEecCCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQD--LVTALKR-------------------------GQNARCSASKH 53 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~--~~~~v~~-------------------------G~~v~~G~~~~ 53 (129)
+|++|+++++++++.+.++ ++|+++++++++ .. ....... |+++.+|..+.
T Consensus 170 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~ 247 (325)
T cd05280 170 LGYTVVALTGKEEQADYLK-SLGASEVLDRED-LLDESKKPLLKARWAGAIDTVGGDVLANLLKQTKYGGVVASCGNAAG 247 (325)
T ss_pred cCCEEEEEeCCHHHHHHHH-hcCCcEEEcchh-HHHHHHHHhcCCCccEEEECCchHHHHHHHHhhcCCCEEEEEecCCC
Confidence 4889999999999999997 899999988654 21 1111110 88888876221
Q ss_pred CC--CCCCcceeccc-------------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 54 ET--PRENCSMWNDL-------------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 54 ~~--~~~~~l~~~~~-------------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
.. .....++.++. ...+.++.+..++..+... .+..+++++++++|++.+.+++..||+|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~ 325 (325)
T cd05280 248 PELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDLLE-IVVREISLEELPEAIDRLLAGKHRGRTVVKI 325 (325)
T ss_pred CccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCCcc-ceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence 11 00001111111 1234556666666777444 4555689999999999999999999999864
No 63
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=98.69 E-value=2.5e-07 Score=67.50 Aligned_cols=113 Identities=20% Similarity=0.172 Sum_probs=77.5
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|++ |+++++++++.+.++ ++|+++++++++ .++.+.+.+ |+++.+|
T Consensus 188 ~g~~~v~~~~~s~~~~~~~~-~~g~~~~~~~~~-~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 188 SGARKVIVSDLNEFRLEFAK-KLGADYTIDAAE-EDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred cCCcEEEEECCCHHHHHHHH-HhCCcEEecCCc-cCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEe
Confidence 4777 899989999998887 899999998876 566554432 5666655
Q ss_pred CCCCCC-CCCC--cceeccc-------chHHHHHHHHHHHHcCCcee--eeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 50 ASKHET-PREN--CSMWNDL-------TYSKFLDVVLPLIREGKIVY--VEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 50 ~~~~~~-~~~~--~l~~~~~-------~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
...... ...+ .+..++. ...+.++++++++.+|.+++ .+...++++++.+|++.+.+++ .||+|++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~ 343 (343)
T cd08235 266 GLPKGSTVNIDPNLIHYREITITGSYAASPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT 343 (343)
T ss_pred ccCCCCCcccCHHHHhhCceEEEEEecCChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence 411110 0000 0111111 23467888999999999863 3445689999999999999999 9999873
No 64
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=98.68 E-value=3.9e-07 Score=65.38 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=77.4
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|++ |+++++++++.++++ ++|++++++++. .++.+.+.+ |+++.+|
T Consensus 152 ~g~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 152 AGARRVIAIDRRPARLALAR-ELGATEVVTDDS-EAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred cCCcEEEEECCCHHHHHHHH-HhCCceEecCCC-cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence 4777 999999988888887 899998888655 455444432 6777776
Q ss_pred CCCCCCCC--------CC-ccee---ccc-chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCc-cceE
Q 039636 50 ASKHETPR--------EN-CSMW---NDL-TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRN-VGKQ 113 (129)
Q Consensus 50 ~~~~~~~~--------~~-~l~~---~~~-~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~-~Gkv 113 (129)
..+..... .+ .+.. .+. ...+.++++++++.+|.+.+. +..+++++++++|++.+.+++. .+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 309 (312)
T cd08269 230 YHQDGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKG 309 (312)
T ss_pred cCCCCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEE
Confidence 42111100 00 1110 111 335788999999999999873 3455899999999999999865 5898
Q ss_pred EE
Q 039636 114 AL 115 (129)
Q Consensus 114 vv 115 (129)
++
T Consensus 310 ~~ 311 (312)
T cd08269 310 VI 311 (312)
T ss_pred Ee
Confidence 86
No 65
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=98.68 E-value=1e-07 Score=60.47 Aligned_cols=40 Identities=30% Similarity=0.583 Sum_probs=36.3
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR 42 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~ 42 (129)
+|++|++++++++|+++++ ++|+++++++++ .++.+.+++
T Consensus 13 ~G~~vi~~~~~~~k~~~~~-~~Ga~~~~~~~~-~~~~~~i~~ 52 (130)
T PF00107_consen 13 MGAKVIATDRSEEKLELAK-ELGADHVIDYSD-DDFVEQIRE 52 (130)
T ss_dssp TTSEEEEEESSHHHHHHHH-HTTESEEEETTT-SSHHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHH-hhcccccccccc-ccccccccc
Confidence 4889999999999999998 999999999988 778888876
No 66
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=98.68 E-value=4.7e-07 Score=65.64 Aligned_cols=114 Identities=22% Similarity=0.236 Sum_probs=79.2
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+++++++++.+.++ ++|+++++++++ ..+.+.+.. |+++.+|..
T Consensus 188 ~G~~V~~~~~s~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 265 (338)
T cd08254 188 MGAAVIAVDIKEEKLELAK-ELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLG 265 (338)
T ss_pred cCCEEEEEcCCHHHHHHHH-HhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCC
Confidence 4789999999999999997 899999888765 444332211 667666541
Q ss_pred CCCCCCC-Ccceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 52 KHETPRE-NCSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 52 ~~~~~~~-~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
....... ..++.+++ ...+.++.+++++.+|.|.+. ...++++++.++++.+.+++..||+|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 338 (338)
T cd08254 266 RDKLTVDLSDLIARELRIIGSFGGTPEDLPEVLDLIAKGKLDPQ-VETRPLDEIPEVLERLHKGKVKGRVVLVP 338 (338)
T ss_pred CCCCccCHHHHhhCccEEEEeccCCHHHHHHHHHHHHcCCCccc-ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 1110000 01111111 225678889999999999876 34589999999999999999999999863
No 67
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.67 E-value=6.3e-07 Score=64.31 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=77.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc---------------------------ccEEEecCCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR---------------------------GQNARCSASKH 53 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~---------------------------G~~v~~G~~~~ 53 (129)
+|++|+++++++++.+.++ ++|++++++. . .++.+.+.+ |+++.+|....
T Consensus 166 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~-~-~~~~~~i~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~ 242 (320)
T cd08243 166 LGATVTATTRSPERAALLK-ELGADEVVID-D-GAIAEQLRAAPGGFDKVLELVGTATLKDSLRHLRPGGIVCMTGLLGG 242 (320)
T ss_pred cCCEEEEEeCCHHHHHHHH-hcCCcEEEec-C-ccHHHHHHHhCCCceEEEECCChHHHHHHHHHhccCCEEEEEccCCC
Confidence 4889999999999999887 8999888754 3 344333221 78887775111
Q ss_pred C-C---CCCCcce--eccc---------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 54 E-T---PRENCSM--WNDL---------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 54 ~-~---~~~~~l~--~~~~---------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
. . .....+. .+.. .....++++++++..+.+++.+..+++++++.+|++.+.++...||+|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvvv 319 (320)
T cd08243 243 QWTLEDFNPMDDIPSGVNLTLTGSSSGDVPQTPLQELFDFVAAGHLDIPPSKVFTFDEIVEAHAYMESNRAFGKVVV 319 (320)
T ss_pred CcccCCcchhhhhhhccceEEEecchhhhhHHHHHHHHHHHHCCceecccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence 0 0 0000001 1111 2245688899999999998765566899999999999999988999885
No 68
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=98.67 E-value=5.4e-07 Score=65.94 Aligned_cols=114 Identities=25% Similarity=0.319 Sum_probs=78.6
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-------------------------------ccEEEec
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-------------------------------G~~v~~G 49 (129)
+|++|++++ ++++.+.++ ++|+++++++.+ .++.+.+++ |+++.+|
T Consensus 178 ~G~~v~~~~-~~~~~~~~~-~~g~~~v~~~~~-~~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g 254 (339)
T cd08249 178 AGYKVITTA-SPKNFDLVK-SLGADAVFDYHD-PDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLL 254 (339)
T ss_pred cCCeEEEEE-CcccHHHHH-hcCCCEEEECCC-chHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEec
Confidence 478899888 567888887 899999999876 556554432 4555555
Q ss_pred CCCCCC-CCCC---------ccee---ccc-chHHHHHHHHHHHHcCCceeeeeeecC--cccHHHHHHHHHcCC-ccce
Q 039636 50 ASKHET-PREN---------CSMW---NDL-TYSKFLDVVLPLIREGKIVYVEDIVEG--LENAPAALLGLFSGR-NVGK 112 (129)
Q Consensus 50 ~~~~~~-~~~~---------~l~~---~~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~--l~~~~~a~~~~~~~~-~~Gk 112 (129)
..+... ...+ .+.. ... .....++++++++.++.+.+.+..+++ ++++++|++.+..++ ..||
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k 334 (339)
T cd08249 255 PVPEETEPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEK 334 (339)
T ss_pred CCCccccCCCCceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCCccceE
Confidence 411110 0001 1110 111 334677889999999999887555677 999999999999999 8999
Q ss_pred EEEEe
Q 039636 113 QALDL 117 (129)
Q Consensus 113 vvv~~ 117 (129)
+|+++
T Consensus 335 vvv~~ 339 (339)
T cd08249 335 LVVRL 339 (339)
T ss_pred EEEeC
Confidence 99874
No 69
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=98.67 E-value=4.8e-07 Score=65.75 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=75.7
Q ss_pred CcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCCC
Q 039636 2 GCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSASK 52 (129)
Q Consensus 2 Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~~ 52 (129)
|++|+++++++++.+.++ ++|+++++++.. ++.+.+.+ |+++.++...
T Consensus 174 G~~vi~~~~~~~~~~~l~-~~g~~~~~~~~~--~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 250 (336)
T TIGR02817 174 GLTVIATASRPESQEWVL-ELGAHHVIDHSK--PLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDPA 250 (336)
T ss_pred CCEEEEEcCcHHHHHHHH-HcCCCEEEECCC--CHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEcccc
Confidence 889999999999999997 899999998653 34443322 5666554310
Q ss_pred CCCC---C-CC-cce----e-cc----c---chHHHHHHHHHHHHcCCceeeeeeec---CcccHHHHHHHHHcCCccce
Q 039636 53 HETP---R-EN-CSM----W-ND----L---TYSKFLDVVLPLIREGKIVYVEDIVE---GLENAPAALLGLFSGRNVGK 112 (129)
Q Consensus 53 ~~~~---~-~~-~l~----~-~~----~---~~~~~~~~~~~~~~~g~i~~~~~~~~---~l~~~~~a~~~~~~~~~~Gk 112 (129)
.... . .+ .+. . .. . ...+.++++++++.+|.+++.+..++ +++++++|++.+.+++..||
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gk 330 (336)
T TIGR02817 251 ELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIESGKARGK 330 (336)
T ss_pred cccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCCccce
Confidence 0000 0 10 111 0 00 0 11267899999999999987654444 47899999999999999999
Q ss_pred EEEE
Q 039636 113 QALD 116 (129)
Q Consensus 113 vvv~ 116 (129)
+|+.
T Consensus 331 vvv~ 334 (336)
T TIGR02817 331 IVLE 334 (336)
T ss_pred EEEe
Confidence 9875
No 70
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=98.67 E-value=3.3e-07 Score=66.43 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=73.3
Q ss_pred CCcE-EEEEeCChHHHHHHHHh-----------cCCCEEEeCCCccc-HHHHhcc----ccEEEecCCCCCCC-CCCcce
Q 039636 1 MGCY-VVGSAGSKEKIERLKNK-----------FAFDDAFNYKEEQD-LVTALKR----GQNARCSASKHETP-RENCSM 62 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~-----------lGad~vi~~~~~~~-~~~~v~~----G~~v~~G~~~~~~~-~~~~l~ 62 (129)
+|++ |++++.++++++.+. . -|+|.+|+...... +...+.. |+++.+|.++.... ....++
T Consensus 167 ~G~~~v~~~~~~~~rl~~a~-~~~~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~ 245 (308)
T TIGR01202 167 AGGSPPAVWETNPRRRDGAT-GYEVLDPEKDPRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAF 245 (308)
T ss_pred cCCceEEEeCCCHHHHHhhh-hccccChhhccCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCcccccchhh
Confidence 4786 555666666766554 2 24577777665222 2222222 99999987322111 111122
Q ss_pred eccc-------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 63 WNDL-------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 63 ~~~~-------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
.++. ...+.++++++++.+|.+++. +..+|||+++++||+.+.+++..+|++|+
T Consensus 246 ~~~~~i~~~~~~~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~ 308 (308)
T TIGR01202 246 MKEARLRIAAEWQPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD 308 (308)
T ss_pred hcceEEEEecccchhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence 2221 345678999999999999874 45568999999999998887778999874
No 71
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=98.67 E-value=5.4e-07 Score=64.05 Aligned_cols=113 Identities=21% Similarity=0.305 Sum_probs=79.5
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+++++++++.+.++ .+|++.++++.. .++.+.+.+ |+++.+|..
T Consensus 144 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~ 221 (303)
T cd08251 144 KGAEIYATASSDDKLEYLK-QLGVPHVINYVE-EDFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMT 221 (303)
T ss_pred cCCEEEEEcCCHHHHHHHH-HcCCCEEEeCCC-ccHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHhccCcEEEEEecc
Confidence 4889999999999999987 899999998765 555544432 777777641
Q ss_pred CCC--C-CC-----CC-cceeccc---------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceE
Q 039636 52 KHE--T-PR-----EN-CSMWNDL---------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQ 113 (129)
Q Consensus 52 ~~~--~-~~-----~~-~l~~~~~---------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkv 113 (129)
+.. . .. .+ .+..... ...+.+.++++++.+|.+++.....+++++++++++.+.+++..||+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (303)
T cd08251 222 ALKSAPSVDLSVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENIGKV 301 (303)
T ss_pred CCCccCccChhHhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccCCCceEEcHHHHHHHHHHHHhCCCcceE
Confidence 111 0 00 01 0000000 23456788999999999987655668999999999999999889998
Q ss_pred EE
Q 039636 114 AL 115 (129)
Q Consensus 114 vv 115 (129)
++
T Consensus 302 v~ 303 (303)
T cd08251 302 VV 303 (303)
T ss_pred eC
Confidence 74
No 72
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=98.66 E-value=3.4e-07 Score=66.94 Aligned_cols=112 Identities=25% Similarity=0.269 Sum_probs=75.1
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|+ +|++++++++|.+.++ ++|++++++++. .++. .+.+ |+++.+|
T Consensus 186 ~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 186 AGASLVIASDPNPYRLELAK-KMGADVVINPRE-EDVV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred cCCcEEEEECCCHHHHHHHH-HhCcceeeCccc-ccHH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence 477 6888888888888887 899999988765 4554 3322 6777666
Q ss_pred CCCCCC-CC-CCcceeccc--------chHHHHHHHHHHHHcCCcee--eeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 50 ASKHET-PR-ENCSMWNDL--------TYSKFLDVVLPLIREGKIVY--VEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 50 ~~~~~~-~~-~~~l~~~~~--------~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
...... .. .+.++.+.. ...+.++++++++.+|.+.+ .+...++++++++|++.+.+++ .||+|++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~ 340 (341)
T cd05281 263 LPPGPVDIDLNNLVIFKGLTVQGITGRKMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLY 340 (341)
T ss_pred cCCCCcccccchhhhccceEEEEEecCCcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEec
Confidence 411110 00 000111111 23456788999999999863 3334579999999999999998 9999875
No 73
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=98.65 E-value=5.9e-07 Score=64.96 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=76.6
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccH-HHHhc------------------------c-ccEEEecCCCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDL-VTALK------------------------R-GQNARCSASKHE 54 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~-~~~v~------------------------~-G~~v~~G~~~~~ 54 (129)
+|++|+++++++++.+.++ ++|+++++++++ .+. ...+. . |+++.+|..+..
T Consensus 169 ~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~ 246 (323)
T TIGR02823 169 LGYEVVASTGKAEEEDYLK-ELGASEVIDRED-LSPPGKPLEKERWAGAVDTVGGHTLANVLAQLKYGGAVAACGLAGGP 246 (323)
T ss_pred cCCeEEEEeCCHHHHHHHH-hcCCcEEEcccc-HHHHHHHhcCCCceEEEECccHHHHHHHHHHhCCCCEEEEEcccCCC
Confidence 4889999998998889887 899999888654 222 11110 0 888888752211
Q ss_pred CCC--------CC-cceeccc------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 55 TPR--------EN-CSMWNDL------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 55 ~~~--------~~-~l~~~~~------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
... .+ .+..... ...+.++.+.+++..+.+.+... +++++++++|++.+.+++..||+|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~a~~~~~~~~~~~k~vv~~ 323 (323)
T TIGR02823 247 DLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLESITR-EITLEELPEALEQILAGQHRGRTVVDV 323 (323)
T ss_pred CccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCcCcee-eecHHHHHHHHHHHhCCCccceEEEeC
Confidence 100 11 1111000 22446777888888898876543 689999999999999999999999863
No 74
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=98.65 E-value=2.5e-07 Score=68.44 Aligned_cols=115 Identities=20% Similarity=0.092 Sum_probs=77.2
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|| +||+++.+++|++++++.+|++.+++... ++....+.+ |+++.+|
T Consensus 191 ~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~-~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 191 LGASVVIVVDRSPERLELAKEAGGADVVVNPSE-DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred cCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc-ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEe
Confidence 476 79999999999999983377787777654 333333322 8888888
Q ss_pred CCCCC--CCCCC-------cceeccc-chHHHHHHHHHHHHcCCceeeeee--ecCcccHHHHHHHHHcCCc-cceEEEE
Q 039636 50 ASKHE--TPREN-------CSMWNDL-TYSKFLDVVLPLIREGKIVYVEDI--VEGLENAPAALLGLFSGRN-VGKQALD 116 (129)
Q Consensus 50 ~~~~~--~~~~~-------~l~~~~~-~~~~~~~~~~~~~~~g~i~~~~~~--~~~l~~~~~a~~~~~~~~~-~Gkvvv~ 116 (129)
.+... ....+ .+..... .....++.+++++.+|.+.+..-. .++++++++|++.+.+++. .-|+++.
T Consensus 270 v~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~ 349 (350)
T COG1063 270 VYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLK 349 (350)
T ss_pred ccCCccCccCHHHHHhcccEEEeccCCCCcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEec
Confidence 73222 11111 2222211 344578999999999999876433 3589999999999998554 5588875
No 75
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=98.64 E-value=6.6e-07 Score=65.22 Aligned_cols=115 Identities=23% Similarity=0.199 Sum_probs=78.1
Q ss_pred CCcEEEEEeCCh----HHHHHHHHhcCCCEEEeCCCcc---cHHHHhcc----------------------------ccE
Q 039636 1 MGCYVVGSAGSK----EKIERLKNKFAFDDAFNYKEEQ---DLVTALKR----------------------------GQN 45 (129)
Q Consensus 1 ~Ga~Vi~t~~s~----~k~~~~~~~lGad~vi~~~~~~---~~~~~v~~----------------------------G~~ 45 (129)
+|++|+++++++ ++.+.++ ++|+++++++++ . ++.+.+.. |++
T Consensus 170 ~g~~v~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~ 247 (341)
T cd08290 170 LGIKTINVVRDRPDLEELKERLK-ALGADHVLTEEE-LRSLLATELLKSAPGGRPKLALNCVGGKSATELARLLSPGGTM 247 (341)
T ss_pred cCCeEEEEEcCCCcchhHHHHHH-hcCCCEEEeCcc-cccccHHHHHHHHcCCCceEEEECcCcHhHHHHHHHhCCCCEE
Confidence 478899998876 6678887 899999998765 3 44333221 777
Q ss_pred EEecCCCCCC--CC------CC-cceecc---------c-chHHHHHHHHHHHHcCCceeeeeeec---CcccHHHHHHH
Q 039636 46 ARCSASKHET--PR------EN-CSMWND---------L-TYSKFLDVVLPLIREGKIVYVEDIVE---GLENAPAALLG 103 (129)
Q Consensus 46 v~~G~~~~~~--~~------~~-~l~~~~---------~-~~~~~~~~~~~~~~~g~i~~~~~~~~---~l~~~~~a~~~ 103 (129)
+.+|..+... .. .+ .+.... + .....+.++++++.+|.+.+....++ +++++.+|++.
T Consensus 248 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~ 327 (341)
T cd08290 248 VTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAPPVEKVTDDPLEEFKDALAN 327 (341)
T ss_pred EEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCCcccccccCCHHHHHHHHHH
Confidence 7776421111 00 01 111100 0 12236888999999999988755567 99999999999
Q ss_pred HHcCCccceEEEEe
Q 039636 104 LFSGRNVGKQALDL 117 (129)
Q Consensus 104 ~~~~~~~Gkvvv~~ 117 (129)
+.+++..||+|+.+
T Consensus 328 ~~~~~~~~k~v~~~ 341 (341)
T cd08290 328 ALKGGGGGKQVLVM 341 (341)
T ss_pred HhhcCCCCeEEEeC
Confidence 99999999999864
No 76
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=98.64 E-value=4.7e-07 Score=66.41 Aligned_cols=113 Identities=18% Similarity=0.103 Sum_probs=76.0
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|+ .++++++++++.+++. ++|+++++++.+ .++.+.+.+ |+++.+|
T Consensus 197 ~G~~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~-~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 197 KNPKKLIVLDLKDERLALAR-KFGADVVLNPPE-VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred cCCcEEEEEcCCHHHHHHHH-HcCCcEEecCCC-cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEc
Confidence 476 4777888888888887 899999998765 455444332 6666666
Q ss_pred CCCCCCCCCC-cc-eecc------cchHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 50 ASKHETPREN-CS-MWND------LTYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 50 ~~~~~~~~~~-~l-~~~~------~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
.......... .+ ..+. ......++++++++.+|.+++. +..+++++++++|++.+++++..||+|+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~ 350 (350)
T cd08256 275 VFGDPVTVDWSIIGDRKELDVLGSHLGPYCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350 (350)
T ss_pred cCCCCCccChhHhhcccccEEEEeccCchhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence 4211100000 01 0111 1223467889999999999874 4556899999999999999988999874
No 77
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=98.63 E-value=7.8e-07 Score=65.03 Aligned_cols=115 Identities=19% Similarity=0.219 Sum_probs=79.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+++++++++.+.++ .+|++++++++...++...+.+ |+++.+|..
T Consensus 188 ~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~ 266 (345)
T cd08260 188 LGARVIAVDIDDDKLELAR-ELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLT 266 (345)
T ss_pred cCCeEEEEeCCHHHHHHHH-HhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCc
Confidence 4789999999999999997 8999999987641233322211 778877752
Q ss_pred CCCC--CCCC--cceecc-------cchHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 52 KHET--PREN--CSMWND-------LTYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 52 ~~~~--~~~~--~l~~~~-------~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
.... ...+ .++.+. ......++++++++.+|.+.+. +...++++++++|++.+..++..||+|++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~ 344 (345)
T cd08260 267 LGEEAGVALPMDRVVARELEIVGSHGMPAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT 344 (345)
T ss_pred CCCCCccccCHHHHhhcccEEEeCCcCCHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence 1111 0000 111111 1345678899999999998764 34457999999999999999999999864
No 78
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.63 E-value=4.7e-07 Score=66.13 Aligned_cols=113 Identities=12% Similarity=0.200 Sum_probs=76.6
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|++ |+++++++++.++++ ++|+++++++++ .++.+.+.+ |+++.+|
T Consensus 191 ~G~~~v~~~~~~~~~~~~~~-~~ga~~v~~~~~-~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 191 LGAERIIAMSRHEDRQALAR-EFGATDIVAERG-EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred cCCCEEEEECCCHHHHHHHH-HcCCceEecCCc-ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEec
Confidence 4774 888888888888887 899999999876 566555443 5666555
Q ss_pred CCCCCC-CCCCcceecc------c-chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 50 ASKHET-PRENCSMWND------L-TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 50 ~~~~~~-~~~~~l~~~~------~-~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
...... ...+..+.+. . ...+.++++++++.+|.+++. +..+++++++.+|++.+..+... |++|+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~-k~~~~ 344 (345)
T cd08287 269 VPHGGVELDVRELFFRNVGLAGGPAPVRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAI-KVLLR 344 (345)
T ss_pred ccCCCCccCHHHHHhcceEEEEecCCcHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCce-EEEeC
Confidence 421111 0000111111 1 446688999999999999863 34558999999999998876654 88874
No 79
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=98.62 E-value=4.9e-07 Score=65.37 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=70.5
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSASK 52 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~~ 52 (129)
+|++|+++++++++.+.++ ++|+++++++++ . ..+.+.+ |+++.+|..+
T Consensus 170 ~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~-~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~i~~g~~~ 246 (326)
T cd08289 170 LGYEVVASTGKADAADYLK-KLGAKEVIPREE-L-QEESIKPLEKQRWAGAVDPVGGKTLAYLLSTLQYGGSVAVSGLTG 246 (326)
T ss_pred CCCeEEEEecCHHHHHHHH-HcCCCEEEcchh-H-HHHHHHhhccCCcCEEEECCcHHHHHHHHHHhhcCCEEEEEeecC
Confidence 4889999999999999997 899999998764 2 2222111 8888887521
Q ss_pred CCCCC--------CC-cceeccc------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 53 HETPR--------EN-CSMWNDL------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 53 ~~~~~--------~~-~l~~~~~------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
..... .+ .+..... ...+.++.+...+..+.+.+.+..+++++++.+|++.+.+++..||+|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 326 (326)
T cd08289 247 GGEVETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLATDLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL 326 (326)
T ss_pred CCCCCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHhhcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence 11100 11 1111100 112233334433332333333455689999999999999999999999864
No 80
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=98.61 E-value=1.3e-06 Score=63.10 Aligned_cols=114 Identities=31% Similarity=0.451 Sum_probs=78.0
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+.++.++++.+.++ .+|.+.+++..+ .++.+.+.+ |+++.+|..
T Consensus 190 ~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~g~~~~~~~~~~l~~~G~~v~~~~~ 267 (342)
T cd08266 190 FGATVIATAGSEDKLERAK-ELGADYVIDYRK-EDFVREVRELTGKRGVDVVVEHVGAATWEKSLKSLARGGRLVTCGAT 267 (342)
T ss_pred cCCEEEEEeCCHHHHHHHH-HcCCCeEEecCC-hHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHhhcCCEEEEEecC
Confidence 4788999998888888886 788877777654 344332221 777777652
Q ss_pred CCCCCCCC--cceecc-------cchHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 52 KHETPREN--CSMWND-------LTYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 52 ~~~~~~~~--~l~~~~-------~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
.......+ ..+.+. ......+.++++++.++.+.+.+...++++++++|++.+.++...||++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 341 (342)
T cd08266 268 TGYEAPIDLRHVFWRQLSILGSTMGTKAELDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLT 341 (342)
T ss_pred CCCCCCcCHHHHhhcceEEEEEecCCHHHHHHHHHHHHcCCcccceeeeEcHHHHHHHHHHHHhCCCCceEEEe
Confidence 11111000 011111 134557788999999999987766668999999999999998888999986
No 81
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=98.61 E-value=1.1e-06 Score=63.73 Aligned_cols=114 Identities=34% Similarity=0.453 Sum_probs=78.8
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc----------------------------ccEEEecCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR----------------------------GQNARCSASK 52 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~----------------------------G~~v~~G~~~ 52 (129)
+|++|+++++++++.+.++ ++|++.++++.. .++.+.+.+ |+++.+|..+
T Consensus 163 ~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~-~~~~~~~~~~~~~~vd~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~ 240 (329)
T cd08250 163 AGCHVIGTCSSDEKAEFLK-SLGCDRPINYKT-EDLGEVLKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFIS 240 (329)
T ss_pred cCCeEEEEeCcHHHHHHHH-HcCCceEEeCCC-ccHHHHHHHhcCCCCeEEEECCcHHHHHHHHHHhccCCeEEEEeccc
Confidence 4788999999999989887 899999988765 444433321 7888887521
Q ss_pred CC------------CCC-----CC-cceeccc-----chHHHHHHHHHHHHcCCceeeee--eecCcccHHHHHHHHHcC
Q 039636 53 HE------------TPR-----EN-CSMWNDL-----TYSKFLDVVLPLIREGKIVYVED--IVEGLENAPAALLGLFSG 107 (129)
Q Consensus 53 ~~------------~~~-----~~-~l~~~~~-----~~~~~~~~~~~~~~~g~i~~~~~--~~~~l~~~~~a~~~~~~~ 107 (129)
.. ... .+ .+..... ...+.++++++++.+|.+.+... .+++++++.+|++.+..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 320 (329)
T cd08250 241 GYQSGTGPSPVKGATLPPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSG 320 (329)
T ss_pred CCcccCcccccccccccHHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcC
Confidence 10 000 00 1111111 13566788999999999988543 237999999999999998
Q ss_pred CccceEEEE
Q 039636 108 RNVGKQALD 116 (129)
Q Consensus 108 ~~~Gkvvv~ 116 (129)
+..||+|++
T Consensus 321 ~~~~kvvv~ 329 (329)
T cd08250 321 KNIGKVVVE 329 (329)
T ss_pred CCCceEEeC
Confidence 888999863
No 82
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=98.61 E-value=1e-06 Score=64.29 Aligned_cols=114 Identities=19% Similarity=0.163 Sum_probs=77.8
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|+ .|+++++++++.+.++ ++|++.++++++ .++.+.+++ |+++.+|
T Consensus 190 ~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~-~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 190 LGAARIIAVDSNPERLDLAK-EAGATDIINPKN-GDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cCCCEEEEEeCCHHHHHHHH-HhCCcEEEcCCc-chHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEc
Confidence 365 7888888888888887 899999998876 555444332 6777666
Q ss_pred CCCCCCC--CCCcceeccc-------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCc-cceEEEE
Q 039636 50 ASKHETP--RENCSMWNDL-------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRN-VGKQALD 116 (129)
Q Consensus 50 ~~~~~~~--~~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~-~Gkvvv~ 116 (129)
....... ....++.+.. ...+.++++++++.+|.+++. ....++++++.+|++.+..++. .+|+|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~ 346 (347)
T cd05278 268 VYGKPDPLPLLGEWFGKNLTFKTGLVPVRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIR 346 (347)
T ss_pred CCCCCcccCccchhhhceeEEEeeccCchhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEec
Confidence 4211110 0001111111 225678999999999999864 3445799999999999998877 7899875
No 83
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=98.61 E-value=1.1e-06 Score=62.89 Aligned_cols=114 Identities=25% Similarity=0.251 Sum_probs=78.9
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+++++++++.+.++ ++|+++++++.. .++.+.+.+ |+++.+|..
T Consensus 168 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~ 245 (325)
T cd08253 168 AGARVIATASSAEGAELVR-QAGADAVFNYRA-EDLADRILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSG 245 (325)
T ss_pred cCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCC-cCHHHHHHHHcCCCceEEEEECCchHHHHHHHHhhCCCCEEEEEeec
Confidence 4789999999999999887 899999998765 555444432 666666541
Q ss_pred CCCC-CCCCcceec------------cc-chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 52 KHET-PRENCSMWN------------DL-TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 52 ~~~~-~~~~~l~~~------------~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
+... ...+.++.. .+ ...+.++.+.+++..+.+++.....+++++++++++.+.++...||++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~ 324 (325)
T cd08253 246 GLRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRPVIAREYPLEEAAAAHEAVESGGAIGKVVLD 324 (325)
T ss_pred CCcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence 1100 000010111 01 33556777888899999887755668999999999999999999999975
No 84
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=98.60 E-value=1.1e-06 Score=63.44 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=76.7
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHH-HHhc------------------------c-ccEEEecCCCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLV-TALK------------------------R-GQNARCSASKHE 54 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~-~~v~------------------------~-G~~v~~G~~~~~ 54 (129)
+|++||+++++++|.+.++ ++|+++++++++ .+.. ..+. . |+++.+|.....
T Consensus 170 ~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~G~~~~~ 247 (324)
T cd08288 170 LGYEVVASTGRPEEADYLR-SLGASEIIDRAE-LSEPGRPLQKERWAGAVDTVGGHTLANVLAQTRYGGAVAACGLAGGA 247 (324)
T ss_pred CCCeEEEEeCCHHHHHHHH-hcCCCEEEEcch-hhHhhhhhccCcccEEEECCcHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 5889999999999999997 999999998764 2221 0000 0 555565542110
Q ss_pred C--CC------CC-cceeccc------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 55 T--PR------EN-CSMWNDL------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 55 ~--~~------~~-~l~~~~~------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
. .. ++ .+..... ...+.++.+.+++..+.+.+. ...++++++++|++.+.+++..||+|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~a~~~~~~~~~~~~vvv~~ 324 (324)
T cd08288 248 DLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEAL-TREIPLADVPDAAEAILAGQVRGRVVVDV 324 (324)
T ss_pred CCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCcccc-ceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence 0 00 01 1111000 235577888889999988765 44589999999999999999999999864
No 85
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=98.59 E-value=1.1e-06 Score=64.07 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=77.1
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhc-------------------c--------ccEEEecCCC
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALK-------------------R--------GQNARCSASK 52 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~-------------------~--------G~~v~~G~~~ 52 (129)
+|+ +|+++++++++.+.++ ++|+++++++++ .++.+... + |+++.+|..+
T Consensus 188 ~G~~~v~~~~~s~~~~~~~~-~~g~~~vi~~~~-~~~~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~ 265 (339)
T cd08232 188 AGAAEIVATDLADAPLAVAR-AMGADETVNLAR-DPLAAYAADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLG 265 (339)
T ss_pred cCCcEEEEECCCHHHHHHHH-HcCCCEEEcCCc-hhhhhhhccCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCC
Confidence 477 7899988888888776 899999998764 32211110 0 7777776422
Q ss_pred CCCCCC-Ccceeccc------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 53 HETPRE-NCSMWNDL------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 53 ~~~~~~-~~l~~~~~------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
...... ..++.+.. ...+.++++++++..|.+++. +..+++++++++|++.+..+...||+|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 339 (339)
T cd08232 266 GPVPLPLNALVAKELDLRGSFRFDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF 339 (339)
T ss_pred CCccCcHHHHhhcceEEEEEecCHHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence 111100 01111111 345578889999999998643 445689999999999999988899999864
No 86
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.59 E-value=1.7e-06 Score=61.92 Aligned_cols=116 Identities=21% Similarity=0.198 Sum_probs=78.2
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCC---------------cccHHHHhc---c-ccEEEecCCCCCCCC--CC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKE---------------EQDLVTALK---R-GQNARCSASKHETPR--EN 59 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~---------------~~~~~~~v~---~-G~~v~~G~~~~~~~~--~~ 59 (129)
+|++|+++++++++.+.++ ++|++.+++... ...+...++ . |+++.+|..+..... ..
T Consensus 156 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~ 234 (305)
T cd08270 156 AGAHVVAVVGSPARAEGLR-ELGAAEVVVGGSELSGAPVDLVVDSVGGPQLARALELLAPGGTVVSVGSSSGEPAVFNPA 234 (305)
T ss_pred cCCEEEEEeCCHHHHHHHH-HcCCcEEEeccccccCCCceEEEECCCcHHHHHHHHHhcCCCEEEEEeccCCCcccccHH
Confidence 4789999999999999997 798865543211 011111111 1 899998862211111 00
Q ss_pred ccee--ccc-----------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 60 CSMW--NDL-----------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 60 ~l~~--~~~-----------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
.+.. ++. ...+.++.+++++.+|.+++.+..+++++++++|++.+.+++..||+|+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 305 (305)
T cd08270 235 AFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALLARRFRGKAVLDV 305 (305)
T ss_pred HHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCccceeccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 1111 011 235678899999999999887666789999999999999999999999864
No 87
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=98.57 E-value=9.6e-07 Score=64.56 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=75.6
Q ss_pred CC-cEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MG-CYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~G-a~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+| ++|++++++++|...++ ++|+++++++.+ .++.+.+.+ |+++.+|
T Consensus 189 ~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~~-~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 189 YSPSKIIMVDLDDNRLEVAK-KLGATHTVNSAK-GDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVG 266 (345)
T ss_pred cCCCeEEEEcCCHHHHHHHH-HhCCCceecccc-ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEec
Confidence 46 68888888888888887 899999998875 455443322 6676666
Q ss_pred CCCCCCCC-CCcceeccc------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCc--cceEEEEe
Q 039636 50 ASKHETPR-ENCSMWNDL------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRN--VGKQALDL 117 (129)
Q Consensus 50 ~~~~~~~~-~~~l~~~~~------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~--~Gkvvv~~ 117 (129)
........ ...++.+.. .....++++++++.+|.+.+. +..+++++++.+|++.+..... ..|+||++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 267 VHGKPVDLHLEKLWIKNITITTGLVDTNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred ccCCCCCcCHHHHhhcCcEEEeecCchhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 41111100 001122221 112567889999999998764 3456899999999999987643 45998863
No 88
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=98.55 E-value=1.5e-06 Score=63.47 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=74.5
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|+ +|+++++++++.+.++ ++|++ +++++. .++.+.+.+ |+++.+|
T Consensus 190 ~g~~~v~~~~~~~~~~~~~~-~~g~~-~~~~~~-~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 190 LGAARVFAVDPVPERLERAA-ALGAE-PINFED-AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred cCCceEEEEcCCHHHHHHHH-HhCCe-EEecCC-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEC
Confidence 476 7999988888888887 88875 455554 444443322 7777777
Q ss_pred CCCCCCCC--------CC-cceecccchHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 50 ASKHETPR--------EN-CSMWNDLTYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 50 ~~~~~~~~--------~~-~l~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
..+..... .+ .+........+.++++++++.++.+.+. +..++++++++++++.+..++. ||+|+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~Vi~ 343 (344)
T cd08284 267 VHTAEEFPFPGLDAYNKNLTLRFGRCPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKV-LKVVLD 343 (344)
T ss_pred cCCCCCccccHHHHhhcCcEEEEecCCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCc-eEEEec
Confidence 52211100 01 1111101456678999999999998763 4455899999999999998877 999874
No 89
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=98.54 E-value=1.6e-06 Score=64.13 Aligned_cols=113 Identities=22% Similarity=0.293 Sum_probs=75.5
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecC
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSA 50 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~ 50 (129)
+|+ .|++++.+++|.+.++ ++|+++++++++ .++.+.+.+ |+++.+|.
T Consensus 209 ~G~~~v~~~~~~~~k~~~~~-~~g~~~~i~~~~-~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 209 AGCTTIIAVDIVDSRLELAK-ELGATHVINPKE-EDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred cCCCeEEEEeCCHHHHHHHH-HcCCcEEecCCC-cCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCc
Confidence 477 5899988999999887 899999998876 555544321 77777765
Q ss_pred CCC-CCCCCC--cceeccc----------chHHHHHHHHHHHHcCCcee-eeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 51 SKH-ETPREN--CSMWNDL----------TYSKFLDVVLPLIREGKIVY-VEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 51 ~~~-~~~~~~--~l~~~~~----------~~~~~~~~~~~~~~~g~i~~-~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
.+. .....+ .++.+.. ...+.++++++++.+|.+.+ .+...++++++.+|++.+.+++.. |+|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~~~~~~-k~~~~ 365 (365)
T cd08278 287 PPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTFYPFEDINQAIADSESGKVI-KPVLR 365 (365)
T ss_pred CCCCCccccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHheEEecHHHHHHHHHHHHCCCce-EEEEC
Confidence 211 110000 1111111 22567788999999999854 233458999999999999987654 77763
No 90
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.53 E-value=1.3e-06 Score=63.95 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=74.5
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccH---HHHhcc------------------------------ccEE
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDL---VTALKR------------------------------GQNA 46 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~---~~~v~~------------------------------G~~v 46 (129)
+|++ |+++++++++.++++ ++|+++++++++ .++ .+.+.+ |+++
T Consensus 185 ~G~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~-~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 185 FGATKVVVTDIDPSRLEFAK-ELGATHTVNVRT-EDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVV 262 (343)
T ss_pred cCCcEEEEECCCHHHHHHHH-HcCCcEEecccc-ccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 4776 899988899999887 899999998875 442 333322 6666
Q ss_pred EecCCCCCCCCCC-cceeccc------chHHHHHHHHHHHHcCCce--eeeeeecCcccHHHHHHHHHcCC-ccceEEE
Q 039636 47 RCSASKHETPREN-CSMWNDL------TYSKFLDVVLPLIREGKIV--YVEDIVEGLENAPAALLGLFSGR-NVGKQAL 115 (129)
Q Consensus 47 ~~G~~~~~~~~~~-~l~~~~~------~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~-~~Gkvvv 115 (129)
.+|.......... .+..+.. ...+.++++++++.++.+. +.+..+++++++.+|++.+.+++ ..+|++|
T Consensus 263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~ 341 (343)
T cd05285 263 LVGMGKPEVTLPLSAASLREIDIRGVFRYANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI 341 (343)
T ss_pred EEccCCCCCccCHHHHhhCCcEEEEeccChHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence 6654111100000 0111111 2336788899999999875 33445689999999999999874 4599988
No 91
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=98.52 E-value=1.8e-06 Score=64.29 Aligned_cols=112 Identities=18% Similarity=0.102 Sum_probs=74.1
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcc---cHHHHhcc-------------------------------ccE
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQ---DLVTALKR-------------------------------GQN 45 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~---~~~~~v~~-------------------------------G~~ 45 (129)
+|+ +|+++++++++.++++ ++|+++++++++ . ++.+.+++ |++
T Consensus 226 ~G~~~vi~~~~~~~~~~~~~-~~g~~~~v~~~~-~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~ 303 (384)
T cd08265 226 AGASKVIAFEISEERRNLAK-EMGADYVFNPTK-MRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKI 303 (384)
T ss_pred cCCCEEEEEcCCHHHHHHHH-HcCCCEEEcccc-cccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEE
Confidence 477 7999998898888887 899999998764 2 44443332 666
Q ss_pred EEecCCCCCCCC-------CC-cceeccc-chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEE
Q 039636 46 ARCSASKHETPR-------EN-CSMWNDL-TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 46 v~~G~~~~~~~~-------~~-~l~~~~~-~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
+.+|........ .. .+..... .....++++++++.+|.+.+. +..+|+++++.+|++.+.++ ..||+|
T Consensus 304 v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~-~~~kvv 382 (384)
T cd08265 304 VYIGRAATTVPLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASER-TDGKIT 382 (384)
T ss_pred EEECCCCCCCcccHHHHhhCceEEEEeeccCCcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcC-CCceEE
Confidence 666541111100 00 1111111 233468889999999999764 34458999999999997654 578988
Q ss_pred E
Q 039636 115 L 115 (129)
Q Consensus 115 v 115 (129)
+
T Consensus 383 v 383 (384)
T cd08265 383 I 383 (384)
T ss_pred e
Confidence 5
No 92
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=98.51 E-value=1.3e-06 Score=64.12 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=69.0
Q ss_pred cEEEEEeCChHHHHHHHHhc-------------CCCEEEeCCCc---c-cHHHHhcc----ccEEEecCCCCCCC-CCCc
Q 039636 3 CYVVGSAGSKEKIERLKNKF-------------AFDDAFNYKEE---Q-DLVTALKR----GQNARCSASKHETP-RENC 60 (129)
Q Consensus 3 a~Vi~t~~s~~k~~~~~~~l-------------Gad~vi~~~~~---~-~~~~~v~~----G~~v~~G~~~~~~~-~~~~ 60 (129)
++|++++.+++|+++++ .+ |+|.+||.... + .+...++- |+++.+|....... ....
T Consensus 190 ~~vi~~~~~~~k~~~a~-~~~~~~~~~~~~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~ 268 (341)
T cd08237 190 SKLVVFGKHQEKLDLFS-FADETYLIDDIPEDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRM 268 (341)
T ss_pred CcEEEEeCcHhHHHHHh-hcCceeehhhhhhccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHH
Confidence 57999999999988876 44 34566664430 1 12322222 99999986322111 1012
Q ss_pred ceeccc-------chHHHHHHHHHHHHcC-----CceeeeeeecCcccH---HHHHHHHHcCCccceEEEEeC
Q 039636 61 SMWNDL-------TYSKFLDVVLPLIREG-----KIVYVEDIVEGLENA---PAALLGLFSGRNVGKQALDLD 118 (129)
Q Consensus 61 l~~~~~-------~~~~~~~~~~~~~~~g-----~i~~~~~~~~~l~~~---~~a~~~~~~~~~~Gkvvv~~~ 118 (129)
++.++. ...+.++++++++.+| .+++.+..+|+|+++ .+|++.+.++ ..||+||.++
T Consensus 269 ~~~k~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~-~~gKvvi~~~ 340 (341)
T cd08237 269 VLEKGLTLVGSSRSTREDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTN-SWGKTVMEWE 340 (341)
T ss_pred HhhCceEEEEecccCHHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhc-CcceEEEEee
Confidence 222222 2345689999999998 466666666888654 5555554444 6899999874
No 93
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=98.49 E-value=3e-06 Score=61.20 Aligned_cols=112 Identities=27% Similarity=0.320 Sum_probs=75.7
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc--------------------------ccEEEecCCCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR--------------------------GQNARCSASKHE 54 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~--------------------------G~~v~~G~~~~~ 54 (129)
+|++|+++++++++.+.+. ++|++++++..+ +.+.+.+ |+++.+|.....
T Consensus 186 ~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~g~~~~~ 261 (332)
T cd08259 186 LGARVIAVTRSPEKLKILK-ELGADYVIDGSK---FSEDVKKLGGADVVIELVGSPTIEESLRSLNKGGRLVLIGNVTPD 261 (332)
T ss_pred cCCeEEEEeCCHHHHHHHH-HcCCcEEEecHH---HHHHHHhccCCCEEEECCChHHHHHHHHHhhcCCEEEEEcCCCCC
Confidence 4788999998888888776 778777775431 2222211 788877752111
Q ss_pred CC--C------CC-cceecccchHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 55 TP--R------EN-CSMWNDLTYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 55 ~~--~------~~-~l~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
.. . .+ .+........+.++++++++.+|.+++.+...++++++++|++.+.+++..||+|++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 332 (332)
T cd08259 262 PAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVLK 332 (332)
T ss_pred CcCCCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCCccceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence 10 0 00 111100134667889999999999987766668999999999999999989999874
No 94
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=98.49 E-value=1.5e-06 Score=63.39 Aligned_cols=114 Identities=18% Similarity=0.111 Sum_probs=74.2
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHH---Hhcc------------------------------ccEE
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVT---ALKR------------------------------GQNA 46 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~---~v~~------------------------------G~~v 46 (129)
+|++ ++++++++++.++++ ++|++++++++. .+..+ .+.+ |+++
T Consensus 184 ~G~~~v~~~~~~~~~~~~~~-~~g~~~~i~~~~-~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v 261 (341)
T cd08262 184 RGVGPIVASDFSPERRALAL-AMGADIVVDPAA-DSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIV 261 (341)
T ss_pred cCCcEEEEECCCHHHHHHHH-HcCCcEEEcCCC-cCHHHHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 4775 666667888888887 899999998765 32111 1110 6666
Q ss_pred EecCCCCCC-CCCCcceeccc-------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 47 RCSASKHET-PRENCSMWNDL-------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 47 ~~G~~~~~~-~~~~~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
.+|..+... ......+.+.. ...+.++++++++.+|.+.+. +..+++++++++|++.+.+++..||+|++
T Consensus 262 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~ 341 (341)
T cd08262 262 VVGVCMESDNIEPALAIRKELTLQFSLGYTPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD 341 (341)
T ss_pred EECCCCCCCccCHHHHhhcceEEEEEecccHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 666421111 00000001111 234578889999999999764 24568999999999999999999999874
No 95
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=98.47 E-value=2.2e-06 Score=62.33 Aligned_cols=115 Identities=20% Similarity=0.223 Sum_probs=74.5
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCC-------------------CcccHHHHhc---c-ccEEEecCCCCCCC-
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYK-------------------EEQDLVTALK---R-GQNARCSASKHETP- 56 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~-------------------~~~~~~~~v~---~-G~~v~~G~~~~~~~- 56 (129)
+|++|+++++++++.+.++ ++ ++++++++ ....+...++ . |+++.+|..+....
T Consensus 186 ~g~~vi~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~v~~~~~~d~~ld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~ 263 (334)
T PRK13771 186 LGAKVIAVTSSESKAKIVS-KY-ADYVIVGSKFSEEVKKIGGADIVIETVGTPTLEESLRSLNMGGKIIQIGNVDPSPTY 263 (334)
T ss_pred cCCEEEEEeCCHHHHHHHH-HH-HHHhcCchhHHHHHHhcCCCcEEEEcCChHHHHHHHHHHhcCCEEEEEeccCCCCCc
Confidence 4789999998888877765 55 54444432 1011111111 1 88988886221111
Q ss_pred -CC-Ccceecc------c-chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 57 -RE-NCSMWND------L-TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 57 -~~-~~l~~~~------~-~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
.. ..++.++ . ...+.++++++++.+|.+++.+...++++++.+|++.+.++...||+++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 333 (334)
T PRK13771 264 SLRLGYIILKDIEIIGHISATKRDVEEALKLVAEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVKP 333 (334)
T ss_pred ccCHHHHHhcccEEEEecCCCHHHHHHHHHHHHcCCCcceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence 10 0011111 1 346778999999999999876666689999999999999988899999864
No 96
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=98.46 E-value=3.4e-06 Score=59.25 Aligned_cols=113 Identities=21% Similarity=0.298 Sum_probs=76.8
Q ss_pred CCcEEEEEeCChHHHHHHHHhcC--CCEEEeCCCcccHHHHhcc-----------------------------ccEEEec
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFA--FDDAFNYKEEQDLVTALKR-----------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lG--ad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G 49 (129)
+|++|+++++++++.+.++ .+| ++.++++.. .++.+.+.+ |+++.+|
T Consensus 132 ~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g 209 (293)
T cd05195 132 LGAEVFATVGSEEKREFLR-ELGGPVDHIFSSRD-LSFADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGRFVEIG 209 (293)
T ss_pred cCCEEEEEeCCHHHHHHHH-HhCCCcceEeecCc-hhHHHHHHHHhCCCCceEEEeCCCchHHHHHHHhcccCceEEEee
Confidence 4789999999988888887 777 788888765 445444332 6666665
Q ss_pred CCCCC---CCCCC----cceeccc-----------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccc
Q 039636 50 ASKHE---TPREN----CSMWNDL-----------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVG 111 (129)
Q Consensus 50 ~~~~~---~~~~~----~l~~~~~-----------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~G 111 (129)
..... ..... ....... ...+.+.++++++.++.+++....++++++++++++.+..++..|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 289 (293)
T cd05195 210 KRDILSNSKLGMRPFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIG 289 (293)
T ss_pred ccccccCCccchhhhccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcccCCCeeechhhHHHHHHHHhcCCCCc
Confidence 41111 00000 0111110 224567889999999999877676789999999999999988888
Q ss_pred eEEE
Q 039636 112 KQAL 115 (129)
Q Consensus 112 kvvv 115 (129)
|+++
T Consensus 290 ~ivv 293 (293)
T cd05195 290 KVVL 293 (293)
T ss_pred eecC
Confidence 8874
No 97
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=98.46 E-value=4.6e-06 Score=59.76 Aligned_cols=115 Identities=28% Similarity=0.336 Sum_probs=77.8
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|++++.++++.+.++ .+|++.+++... .++.+.+.+ |+++.+|..
T Consensus 163 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~v~~g~~ 240 (325)
T TIGR02824 163 FGARVFTTAGSDEKCAACE-ALGADIAINYRE-EDFVEVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRIVQIGFQ 240 (325)
T ss_pred cCCEEEEEeCCHHHHHHHH-HcCCcEEEecCc-hhHHHHHHHHcCCCCeEEEEECCchHHHHHHHHhhccCcEEEEEecC
Confidence 4789999999888888886 899888887654 444443321 777777641
Q ss_pred CCC--CCC------CC-cceec---c-c------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccce
Q 039636 52 KHE--TPR------EN-CSMWN---D-L------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGK 112 (129)
Q Consensus 52 ~~~--~~~------~~-~l~~~---~-~------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gk 112 (129)
... ... ++ .+... . . .....+.++++++.++.+.+.+...++++++.++++.+.++...||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (325)
T TIGR02824 241 GGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDAAQAHALMESGDHIGK 320 (325)
T ss_pred CCCcCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccCccccEEeHHHHHHHHHHHHhCCCcce
Confidence 111 100 01 11100 0 0 1244567788999999987765556899999999999999888999
Q ss_pred EEEEe
Q 039636 113 QALDL 117 (129)
Q Consensus 113 vvv~~ 117 (129)
+++++
T Consensus 321 ~v~~~ 325 (325)
T TIGR02824 321 IVLTV 325 (325)
T ss_pred EEEeC
Confidence 99864
No 98
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=98.45 E-value=5.4e-06 Score=60.16 Aligned_cols=113 Identities=23% Similarity=0.286 Sum_probs=76.5
Q ss_pred CC-cEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecC
Q 039636 1 MG-CYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSA 50 (129)
Q Consensus 1 ~G-a~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~ 50 (129)
+| ++|+++++++++.+.++ ++|+++++++.+ ++.+.+.. |+++.+|.
T Consensus 173 ~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~--~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~ 249 (336)
T cd08252 173 LTGLTVIATASRPESIAWVK-ELGADHVINHHQ--DLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVD 249 (336)
T ss_pred cCCcEEEEEcCChhhHHHHH-hcCCcEEEeCCc--cHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecC
Confidence 47 89999999999999997 899999998753 23222211 77777764
Q ss_pred CCCCCC-----CCC-ccee----c-----cc---chHHHHHHHHHHHHcCCceeeeee---ecCcccHHHHHHHHHcCCc
Q 039636 51 SKHETP-----REN-CSMW----N-----DL---TYSKFLDVVLPLIREGKIVYVEDI---VEGLENAPAALLGLFSGRN 109 (129)
Q Consensus 51 ~~~~~~-----~~~-~l~~----~-----~~---~~~~~~~~~~~~~~~g~i~~~~~~---~~~l~~~~~a~~~~~~~~~ 109 (129)
.+.... ..+ .+.. . +. ...+.++++++++.+|.+.+.+.. .++++++++|++.+.++..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 329 (336)
T cd08252 250 PQEPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKT 329 (336)
T ss_pred CCCcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCc
Confidence 211000 011 1110 0 00 224678899999999999875332 3699999999999999999
Q ss_pred cceEEEE
Q 039636 110 VGKQALD 116 (129)
Q Consensus 110 ~Gkvvv~ 116 (129)
.||++++
T Consensus 330 ~~~vv~~ 336 (336)
T cd08252 330 IGKIVLE 336 (336)
T ss_pred cceEEeC
Confidence 9999863
No 99
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=98.44 E-value=3.5e-06 Score=62.27 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=75.5
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|++ |+++++++++.++++ ++|++++++++. .++...+.+ |+++.+|
T Consensus 205 ~G~~~Vi~~~~~~~~~~~~~-~~g~~~vv~~~~-~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 205 AGASRIIAVDPVPEKLELAR-RFGATHTVNASE-DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred cCCCcEEEEcCCHHHHHHHH-HhCCeEEeCCCC-ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEe
Confidence 4775 999999999999887 899999998765 455443322 6777766
Q ss_pred CCCC-CCCCCC--cceecc----------cchHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEE
Q 039636 50 ASKH-ETPREN--CSMWND----------LTYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 50 ~~~~-~~~~~~--~l~~~~----------~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
.... .....+ .+.... ....+.++++++++.+|.+.+. +..+++++++.+|++.+.+++..+.++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (363)
T cd08279 283 MGPPGETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI 362 (363)
T ss_pred cCCCCcccccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence 4211 110001 111000 0346788999999999999763 445689999999999999888765554
No 100
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=98.43 E-value=2.6e-06 Score=61.59 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=72.7
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCc---------------cc-HHH---Hhcc-ccEEEecCCCCCCCCC-C
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEE---------------QD-LVT---ALKR-GQNARCSASKHETPRE-N 59 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~---------------~~-~~~---~v~~-G~~v~~G~~~~~~~~~-~ 59 (129)
+|++|+++++++++.+.++ ++|++.++++... .. +.. .+.. |+++..|......... .
T Consensus 178 ~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~ 256 (319)
T cd08242 178 TGPDVVLVGRHSEKLALAR-RLGVETVLPDEAESEGGGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLT 256 (319)
T ss_pred cCCeEEEEcCCHHHHHHHH-HcCCcEEeCccccccCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCccCHH
Confidence 5889999999999999998 7999877766430 01 111 1111 7777655421111100 0
Q ss_pred cceeccc----chHHHHHHHHHHHHcCCc--eeeeeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 60 CSMWNDL----TYSKFLDVVLPLIREGKI--VYVEDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 60 ~l~~~~~----~~~~~~~~~~~~~~~g~i--~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
.++.++. .....++++++++.+|.| .+.+..+|+++++.+|++.+.++. .+|+|++
T Consensus 257 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~k~vi~ 318 (319)
T cd08242 257 KAVVNEITLVGSRCGPFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPG-ALKVLLR 318 (319)
T ss_pred HheecceEEEEEecccHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCC-ceEEEeC
Confidence 1222222 111137889999999999 445556689999999999998765 5899875
No 101
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=98.42 E-value=6.2e-06 Score=59.83 Aligned_cols=112 Identities=20% Similarity=0.098 Sum_probs=76.4
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHH---------------------hc---c-ccEEEecCCCCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTA---------------------LK---R-GQNARCSASKHET 55 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~---------------------v~---~-G~~v~~G~~~~~~ 55 (129)
+|++|+++++++++.+.++ ++|++.++++.. .++... ++ . |+++.+|......
T Consensus 185 ~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~ 262 (330)
T cd08245 185 MGFETVAITRSPDKRELAR-KLGADEVVDSGA-ELDEQAAAGGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPP 262 (330)
T ss_pred CCCEEEEEeCCHHHHHHHH-HhCCcEEeccCC-cchHHhccCCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCCc
Confidence 4789999999999999886 899988887654 322211 00 0 7787776521111
Q ss_pred CCCC--cceeccc-------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 56 PREN--CSMWNDL-------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 56 ~~~~--~l~~~~~-------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
...+ .++.++. .....++++++++.++.+.+.. ..++++++.+|++.+.++...||+|+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~~~~v~ 330 (330)
T cd08245 263 FSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGKVKPMI-ETFPLDQANEAYERMEKGDVRFRFVL 330 (330)
T ss_pred cccchHHHHhCCCEEEEeccCCHHHHHHHHHHHHcCCCcceE-EEEcHHHHHHHHHHHHcCCCCcceeC
Confidence 0010 1222221 2456788899999999998643 35899999999999999999999875
No 102
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=98.40 E-value=6.5e-06 Score=57.85 Aligned_cols=113 Identities=21% Similarity=0.322 Sum_probs=75.9
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCC--CEEEeCCCcccHHHHhcc-----------------------------ccEEEec
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAF--DDAFNYKEEQDLVTALKR-----------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGa--d~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G 49 (129)
+|++|+++++++++.+.++ ++|+ +.++++.. .++.+.+.+ |+++.+|
T Consensus 128 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g 205 (288)
T smart00829 128 LGAEVFATAGSPEKRDFLR-ELGIPDDHIFSSRD-LSFADEILRATGGRGVDVVLNSLAGEFLDASLRCLAPGGRFVEIG 205 (288)
T ss_pred cCCEEEEEeCCHHHHHHHH-HcCCChhheeeCCC-ccHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHhccCCcEEEEEc
Confidence 4789999999999999987 8998 78888766 555544432 6666665
Q ss_pred CCC---CCCCCCCc----ceeccc----------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccce
Q 039636 50 ASK---HETPRENC----SMWNDL----------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGK 112 (129)
Q Consensus 50 ~~~---~~~~~~~~----l~~~~~----------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gk 112 (129)
... ........ +..+.. .....+.++++++.++.+.+.....++++++.++++.+..++..||
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (288)
T smart00829 206 KRDIRDNSQLGMAPFRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQQGKHIGK 285 (288)
T ss_pred CcCCccccccchhhhcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHhcCCCcce
Confidence 411 00000000 000000 1234567888999999987754456899999999999999888888
Q ss_pred EEE
Q 039636 113 QAL 115 (129)
Q Consensus 113 vvv 115 (129)
+++
T Consensus 286 ivv 288 (288)
T smart00829 286 VVL 288 (288)
T ss_pred EeC
Confidence 874
No 103
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=98.38 E-value=7.2e-06 Score=58.55 Aligned_cols=113 Identities=29% Similarity=0.384 Sum_probs=75.8
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+++++++++.+.++ .+|++.++++.. .++.+.+.+ |+++.+|..
T Consensus 163 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~g~~i~~~~~ 240 (323)
T cd05276 163 LGARVIATAGSEEKLEACR-ALGADVAINYRT-EDFAEEVKEATGGRGVDVILDMVGGDYLARNLRALAPDGRLVLIGLL 240 (323)
T ss_pred cCCEEEEEcCCHHHHHHHH-HcCCCEEEeCCc-hhHHHHHHHHhCCCCeEEEEECCchHHHHHHHHhhccCCEEEEEecC
Confidence 4789999998888888886 899988888765 444443321 667766642
Q ss_pred CCCCCC-C-Ccceeccc-----------------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccce
Q 039636 52 KHETPR-E-NCSMWNDL-----------------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGK 112 (129)
Q Consensus 52 ~~~~~~-~-~~l~~~~~-----------------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gk 112 (129)
+..... . ..++.++. .....+.++++++.++.+.+.....++++++.+|++.+.++...||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~k 320 (323)
T cd05276 241 GGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRPVIDKVFPLEEAAEAHRRMESNEHIGK 320 (323)
T ss_pred CCCCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHhCCCcce
Confidence 111000 0 01111110 1234567788999999998765566899999999999999888899
Q ss_pred EEE
Q 039636 113 QAL 115 (129)
Q Consensus 113 vvv 115 (129)
+++
T Consensus 321 vv~ 323 (323)
T cd05276 321 IVL 323 (323)
T ss_pred EeC
Confidence 874
No 104
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.38 E-value=1.3e-05 Score=57.69 Aligned_cols=114 Identities=20% Similarity=0.253 Sum_probs=76.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|+.++ ++++.+.+. .+|++.+++... .++.+.+.+ |+++.+|..
T Consensus 165 ~g~~v~~~~-~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~G~~v~~~~~ 241 (325)
T cd08271 165 AGLRVITTC-SKRNFEYVK-SLGADHVIDYND-EDVCERIKEITGGRGVDAVLDTVGGETAAALAPTLAFNGHLVCIQGR 241 (325)
T ss_pred cCCEEEEEE-cHHHHHHHH-HcCCcEEecCCC-ccHHHHHHHHcCCCCCcEEEECCCcHhHHHHHHhhccCCEEEEEcCC
Confidence 478888887 677778886 899988887665 444443332 677766541
Q ss_pred CC-CCCC--CCcceec----------c-----cchHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceE
Q 039636 52 KH-ETPR--ENCSMWN----------D-----LTYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQ 113 (129)
Q Consensus 52 ~~-~~~~--~~~l~~~----------~-----~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkv 113 (129)
.. .... ...+... . ....+.+.++++++.++.+.+.....++++++.++++.+.++...||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~~ki 321 (325)
T cd08271 242 PDASPDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIEVLPFEQLPEALRALKDRHTRGKI 321 (325)
T ss_pred CCCcchhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeeccceEEcHHHHHHHHHHHHcCCccceE
Confidence 11 0100 0000000 0 023456788999999999987655568999999999999998889999
Q ss_pred EEEe
Q 039636 114 ALDL 117 (129)
Q Consensus 114 vv~~ 117 (129)
++++
T Consensus 322 v~~~ 325 (325)
T cd08271 322 VVTI 325 (325)
T ss_pred EEEC
Confidence 8863
No 105
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=98.36 E-value=5.7e-06 Score=60.37 Aligned_cols=112 Identities=25% Similarity=0.272 Sum_probs=74.5
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc------------------------------ccEEEec
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR------------------------------GQNARCS 49 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~------------------------------G~~v~~G 49 (129)
+|++ |+++++++++.+.++ ++|++.++++++ .. .+.+.+ |+++.+|
T Consensus 182 ~G~~~v~~~~~~~~~~~~l~-~~g~~~~~~~~~-~~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 182 LGAKRVIAVDIDDEKLAVAR-ELGADDTINPKE-ED-VEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred cCCCEEEEEcCCHHHHHHHH-HcCCCEEecCcc-cc-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 4776 999998888888886 889988888765 33 222211 7787777
Q ss_pred CCCCCC-CCC-C--cceeccc------------chHHHHHHHHHHHHcCCce--eeeeeecCcccHHHHHHHHHc-CCcc
Q 039636 50 ASKHET-PRE-N--CSMWNDL------------TYSKFLDVVLPLIREGKIV--YVEDIVEGLENAPAALLGLFS-GRNV 110 (129)
Q Consensus 50 ~~~~~~-~~~-~--~l~~~~~------------~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~-~~~~ 110 (129)
...... ... + .++.++. ...+.++++++++.+|.+. +.+..+++++++.++++.+.+ +...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (343)
T cd08236 259 IPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFS 338 (343)
T ss_pred ccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCe
Confidence 521110 000 0 0011111 2256788999999999986 344456899999999999998 6778
Q ss_pred ceEEE
Q 039636 111 GKQAL 115 (129)
Q Consensus 111 Gkvvv 115 (129)
||+|+
T Consensus 339 ~k~v~ 343 (343)
T cd08236 339 GKVLL 343 (343)
T ss_pred eEEeC
Confidence 89874
No 106
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=98.36 E-value=7.6e-06 Score=58.50 Aligned_cols=114 Identities=27% Similarity=0.327 Sum_probs=77.9
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|+.|++++.++++.+.++ .+|++.++++.. .++.+.+.+ |+++.+|..
T Consensus 163 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~~~~ 240 (323)
T cd08241 163 LGARVIAAASSEEKLALAR-ALGADHVIDYRD-PDLRERVKALTGGRGVDVVYDPVGGDVFEASLRSLAWGGRLLVIGFA 240 (323)
T ss_pred hCCEEEEEeCCHHHHHHHH-HcCCceeeecCC-ccHHHHHHHHcCCCCcEEEEECccHHHHHHHHHhhccCCEEEEEccC
Confidence 3788999999988888887 889888887665 455443332 677776641
Q ss_pred CCCCC---C-----CC-cceeccc---------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceE
Q 039636 52 KHETP---R-----EN-CSMWNDL---------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQ 113 (129)
Q Consensus 52 ~~~~~---~-----~~-~l~~~~~---------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkv 113 (129)
..... . .+ .+..... .....++++++++.++.+.+.+...++++++.++++.+..+...||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 320 (323)
T cd08241 241 SGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRPHVSAVFPLEQAAEALRALADRKATGKV 320 (323)
T ss_pred CCCcCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcccccceEEcHHHHHHHHHHHHhCCCCCcE
Confidence 11110 0 01 1111000 13467888999999999877655568999999999999988888998
Q ss_pred EEE
Q 039636 114 ALD 116 (129)
Q Consensus 114 vv~ 116 (129)
+++
T Consensus 321 vv~ 323 (323)
T cd08241 321 VLT 323 (323)
T ss_pred EeC
Confidence 863
No 107
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=98.36 E-value=8.7e-06 Score=59.11 Aligned_cols=112 Identities=21% Similarity=0.180 Sum_probs=74.6
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHH---------------------------hcc-ccEEEecCC
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTA---------------------------LKR-GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~---------------------------v~~-G~~v~~G~~ 51 (129)
+|++ |+++++++++.+.++ ++|++.++++.+ .++..+ +.. |+++.+|..
T Consensus 182 ~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~ 259 (334)
T cd08234 182 NGASRVTVAEPNEEKLELAK-KLGATETVDPSR-EDPEAQKEDNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVY 259 (334)
T ss_pred cCCcEEEEECCCHHHHHHHH-HhCCeEEecCCC-CCHHHHHHhcCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecC
Confidence 4776 888888898888886 889888887654 332211 000 788888752
Q ss_pred CCC-CCCCC--cceeccc------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 52 KHE-TPREN--CSMWNDL------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 52 ~~~-~~~~~--~l~~~~~------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
+.. ....+ .++.++. ...+.++++++++.++.+.+. +..+++++++++|++.+.. ...||+|+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi 333 (334)
T cd08234 260 APDARVSISPFEIFQKELTIIGSFINPYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV 333 (334)
T ss_pred CCCCCcccCHHHHHhCCcEEEEeccCHHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence 211 11111 1111111 345678899999999998753 3455899999999999998 78899986
No 108
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=98.35 E-value=7.8e-06 Score=61.35 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCceee--ee-eecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 71 FLDVVLPLIREGKIVYV--ED-IVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 71 ~~~~~~~~~~~g~i~~~--~~-~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
.+.++++++.+|++++. +. .+|||+++++||+.+.+++ .+|++|.+
T Consensus 342 ~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~-~~Kvvi~~ 390 (393)
T TIGR02819 342 YNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGA-AKKFVIDP 390 (393)
T ss_pred hHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCC-ceEEEEeC
Confidence 34679999999998763 23 4589999999999999875 48999976
No 109
>PLN02702 L-idonate 5-dehydrogenase
Probab=98.35 E-value=7.9e-06 Score=60.36 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=72.7
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCC-cccHHHHhcc--------------------------------ccEE
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKE-EQDLVTALKR--------------------------------GQNA 46 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~-~~~~~~~v~~--------------------------------G~~v 46 (129)
+|++ |++++.++++.++++ ++|+++++++.. ..++.+.+.+ |+++
T Consensus 204 ~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v 282 (364)
T PLN02702 204 FGAPRIVIVDVDDERLSVAK-QLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVC 282 (364)
T ss_pred cCCCEEEEECCCHHHHHHHH-HhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 4664 777777888888887 899998876531 1344333210 6777
Q ss_pred EecCCCCCCC-CCCcceeccc------chHHHHHHHHHHHHcCCce--eeeeeec--CcccHHHHHHHHHcCCccceEEE
Q 039636 47 RCSASKHETP-RENCSMWNDL------TYSKFLDVVLPLIREGKIV--YVEDIVE--GLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 47 ~~G~~~~~~~-~~~~l~~~~~------~~~~~~~~~~~~~~~g~i~--~~~~~~~--~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
.+|....... ....+..++. .....++.+++++.+|.+. +.+..+| +++++.+|++.+.+++..+|+|+
T Consensus 283 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~ 362 (364)
T PLN02702 283 LVGMGHNEMTVPLTPAAAREVDVVGVFRYRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMF 362 (364)
T ss_pred EEccCCCCCcccHHHHHhCccEEEEeccChHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEE
Confidence 7765221111 0001111111 2345678899999999985 3334454 45899999999999888899998
Q ss_pred E
Q 039636 116 D 116 (129)
Q Consensus 116 ~ 116 (129)
.
T Consensus 363 ~ 363 (364)
T PLN02702 363 N 363 (364)
T ss_pred e
Confidence 4
No 110
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=98.34 E-value=5e-06 Score=60.29 Aligned_cols=113 Identities=23% Similarity=0.117 Sum_probs=75.5
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcc--------------cH-HHHhc---c-ccEEEecCCCCCCCCCC--
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQ--------------DL-VTALK---R-GQNARCSASKHETPREN-- 59 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~--------------~~-~~~v~---~-G~~v~~G~~~~~~~~~~-- 59 (129)
+|++|++++.++++.+.++ ++|++++++++... .. ...++ . |+++.+|.........+
T Consensus 190 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~ 268 (329)
T cd08298 190 QGAEVFAFTRSGEHQELAR-ELGADWAGDSDDLPPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYE 268 (329)
T ss_pred CCCeEEEEcCChHHHHHHH-HhCCcEEeccCccCCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchh
Confidence 4789999999999999996 89998887654200 00 11111 1 88887775211111100
Q ss_pred cce-----eccc-chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 60 CSM-----WNDL-TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 60 ~l~-----~~~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
.+. .... ...+.+++++++++++.+++.. .+++++++.+|++.+.+++..||+|+
T Consensus 269 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~~~~v~ 329 (329)
T cd08298 269 LLWGEKTIRSVANLTRQDGEEFLKLAAEIPIKPEV-ETYPLEEANEALQDLKEGRIRGAAVL 329 (329)
T ss_pred hhhCceEEEEecCCCHHHHHHHHHHHHcCCCCceE-EEEeHHHHHHHHHHHHcCCCcceeeC
Confidence 111 1111 3456778899999999998753 45899999999999999999999874
No 111
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.32 E-value=1.4e-05 Score=57.33 Aligned_cols=113 Identities=24% Similarity=0.232 Sum_probs=77.0
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
+|++|++++++ ++.+.++ ++|++.++++.. . +.+.+.+ |+++.+|..
T Consensus 168 ~g~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~-~-~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~ 243 (326)
T cd08272 168 AGARVYATASS-EKAAFAR-SLGADPIIYYRE-T-VVEYVAEHTGGRGFDVVFDTVGGETLDASFEAVALYGRVVSILGG 243 (326)
T ss_pred cCCEEEEEech-HHHHHHH-HcCCCEEEecch-h-HHHHHHHhcCCCCCcEEEECCChHHHHHHHHHhccCCEEEEEecC
Confidence 47899999887 8888887 899988887654 3 4433332 677766542
Q ss_pred CCCCC----CCC-cce----------eccc-chHHHHHHHHHHHHcCCceeeee-eecCcccHHHHHHHHHcCCccceEE
Q 039636 52 KHETP----REN-CSM----------WNDL-TYSKFLDVVLPLIREGKIVYVED-IVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 52 ~~~~~----~~~-~l~----------~~~~-~~~~~~~~~~~~~~~g~i~~~~~-~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
..... ..+ .+. ...+ .....+.++++++.++.+.+.+. ..++++++.++++.+.+++..||++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 323 (326)
T cd08272 244 ATHDLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIV 323 (326)
T ss_pred CccchhhHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCcccccccceecHHHHHHHHHHHHcCCcccEEE
Confidence 11000 011 000 0011 23567888999999999987644 6689999999999999888889999
Q ss_pred EEe
Q 039636 115 LDL 117 (129)
Q Consensus 115 v~~ 117 (129)
+++
T Consensus 324 ~~~ 326 (326)
T cd08272 324 IDV 326 (326)
T ss_pred EEC
Confidence 864
No 112
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=98.28 E-value=2.4e-05 Score=57.17 Aligned_cols=113 Identities=23% Similarity=0.303 Sum_probs=76.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc--------------------------ccEEEecCCC--
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR--------------------------GQNARCSASK-- 52 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~--------------------------G~~v~~G~~~-- 52 (129)
+|++|++++++ ++.+.++ ++|+++++++.. .++.+.+.. |+++.+|..+
T Consensus 186 ~G~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~-~~~~~~l~~~~~vd~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~ 262 (350)
T cd08248 186 WGAHVTTTCST-DAIPLVK-SLGADDVIDYNN-EDFEEELTERGKFDVILDTVGGDTEKWALKLLKKGGTYVTLVSPLLK 262 (350)
T ss_pred CCCeEEEEeCc-chHHHHH-HhCCceEEECCC-hhHHHHHHhcCCCCEEEECCChHHHHHHHHHhccCCEEEEecCCccc
Confidence 48899988765 5667776 899988888765 444433221 8888887511
Q ss_pred CCC---C----CC-C---------cceecc-------cchHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCC
Q 039636 53 HET---P----RE-N---------CSMWND-------LTYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGR 108 (129)
Q Consensus 53 ~~~---~----~~-~---------~l~~~~-------~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~ 108 (129)
... . .. . .+.... ......++++++++.+|.+.+.+...++++++.+|++.+.+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~ 342 (350)
T cd08248 263 NTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKIKPVIDKVFPFEEVPEAYEKVESGH 342 (350)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCEecccceeecHHHHHHHHHHHhcCC
Confidence 000 0 00 0 000000 0235678999999999999877666689999999999999988
Q ss_pred ccceEEEE
Q 039636 109 NVGKQALD 116 (129)
Q Consensus 109 ~~Gkvvv~ 116 (129)
..||++++
T Consensus 343 ~~~~vv~~ 350 (350)
T cd08248 343 ARGKTVIK 350 (350)
T ss_pred CceEEEeC
Confidence 88998863
No 113
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=98.27 E-value=2.1e-05 Score=58.73 Aligned_cols=50 Identities=24% Similarity=0.194 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCC-ccceEEEE
Q 039636 67 TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGR-NVGKQALD 116 (129)
Q Consensus 67 ~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~-~~Gkvvv~ 116 (129)
...+.++++++++.+|.+.+. +..+++++++.+|++.+..++ ..+|+||+
T Consensus 333 ~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~ 385 (386)
T cd08283 333 HVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLK 385 (386)
T ss_pred CchHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEec
Confidence 345678999999999999864 334589999999999998876 56899985
No 114
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.23 E-value=3.4e-05 Score=55.29 Aligned_cols=114 Identities=21% Similarity=0.196 Sum_probs=76.2
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-----------------------------ccEEEecCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-----------------------------GQNARCSAS 51 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-----------------------------G~~v~~G~~ 51 (129)
.|++|+.++.++++.+.++ .+|++.++++.. .++.+.+.+ |+++.+|..
T Consensus 168 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~ 245 (328)
T cd08268 168 AGATVIATTRTSEKRDALL-ALGAAHVIVTDE-EDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADALAPGGTLVVYGAL 245 (328)
T ss_pred cCCEEEEEcCCHHHHHHHH-HcCCCEEEecCC-ccHHHHHHHHhCCCCceEEEECCchHhHHHHHHhhccCCEEEEEEeC
Confidence 4789999998988888887 889888887665 444333321 677776641
Q ss_pred CCCC--CC------CC-cceecc-------c-chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEE
Q 039636 52 KHET--PR------EN-CSMWND-------L-TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQA 114 (129)
Q Consensus 52 ~~~~--~~------~~-~l~~~~-------~-~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvv 114 (129)
+... .. .+ .+.... + .....++.+.+++.++.+.+.....++++++.++++.+..+...||+|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 325 (328)
T cd08268 246 SGEPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVEAHRYLESGQQIGKIV 325 (328)
T ss_pred CCCCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcCCcccEEcHHHHHHHHHHHHcCCCCceEE
Confidence 1110 00 11 111100 1 234566677777888988876556689999999999999988889998
Q ss_pred EE
Q 039636 115 LD 116 (129)
Q Consensus 115 v~ 116 (129)
++
T Consensus 326 ~~ 327 (328)
T cd08268 326 VT 327 (328)
T ss_pred Ee
Confidence 75
No 115
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=98.23 E-value=1.5e-05 Score=59.21 Aligned_cols=48 Identities=23% Similarity=0.168 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccceEEEE
Q 039636 68 YSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGKQALD 116 (129)
Q Consensus 68 ~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~ 116 (129)
..+.+.++++++.++.+.+. +..+++++++++|++.+.+++ .+|+|++
T Consensus 325 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~kvvv~ 374 (375)
T cd08282 325 VKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL-ETKVVIK 374 (375)
T ss_pred chhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC-ceEEEeC
Confidence 55678889999999999873 455689999999999999988 9999875
No 116
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.17 E-value=3.4e-05 Score=55.29 Aligned_cols=112 Identities=28% Similarity=0.353 Sum_probs=74.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHH------------------------HH---hcc-ccEEEecCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLV------------------------TA---LKR-GQNARCSASK 52 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~------------------------~~---v~~-G~~v~~G~~~ 52 (129)
+|++|++++++ ++.+.++ .+|+++++++.. .++. .. +.. |+++.+|..+
T Consensus 167 ~g~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~ 243 (319)
T cd08267 167 LGAHVTGVCST-RNAELVR-SLGADEVIDYTT-EDFVALTAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGP 243 (319)
T ss_pred cCCEEEEEeCH-HHHHHHH-HcCCCEeecCCC-CCcchhccCCCCCcEEEECCCchHHHHHHhhhccCCCCEEEEecccc
Confidence 47899998865 7788886 899888887543 2221 00 111 7788777511
Q ss_pred CCCC-CC-----C-cceecc-----c-chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 53 HETP-RE-----N-CSMWND-----L-TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 53 ~~~~-~~-----~-~l~~~~-----~-~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
.... .. . ...... . ...+.+.++++++.++.+.+.+..+++++++++|++.+.++...||+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~vvv 319 (319)
T cd08267 244 SGLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRLKSGRARGKVVI 319 (319)
T ss_pred ccccccccccchhhccccceEEEEEecCCHHHHHHHHHHHHCCCeeeeeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence 1100 00 0 000010 0 2367889999999999998776666899999999999999888888874
No 117
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=98.13 E-value=4.4e-05 Score=56.80 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=71.5
Q ss_pred CCc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCccc--HHHHhcc------------------------------ccEEE
Q 039636 1 MGC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQD--LVTALKR------------------------------GQNAR 47 (129)
Q Consensus 1 ~Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~--~~~~v~~------------------------------G~~v~ 47 (129)
+|+ +|+++++++++++.++ ++|+++++++.+ .+ +.+.+.+ |+++.
T Consensus 213 ~G~~~Vi~~~~~~~~~~~a~-~lGa~~~i~~~~-~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~ 290 (373)
T cd08299 213 AGASRIIAVDINKDKFAKAK-ELGATECINPQD-YKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVI 290 (373)
T ss_pred cCCCeEEEEcCCHHHHHHHH-HcCCceEecccc-cchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEE
Confidence 477 7999999999999997 899999998754 22 3332221 66766
Q ss_pred ecCCCCC-CCCCCc-ceecc-------c---chHHHHHHHHHHHHcCCcee--eeeeecCcccHHHHHHHHHcCCccceE
Q 039636 48 CSASKHE-TPRENC-SMWND-------L---TYSKFLDVVLPLIREGKIVY--VEDIVEGLENAPAALLGLFSGRNVGKQ 113 (129)
Q Consensus 48 ~G~~~~~-~~~~~~-l~~~~-------~---~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~Gkv 113 (129)
+|..... ....+. .+... . .....+.++++.+.++.+++ .+..+|+++++.+|++.+.+++. .|+
T Consensus 291 ~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~ 369 (373)
T cd08299 291 VGVPPSSQNLSINPMLLLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRT 369 (373)
T ss_pred EccCCCCceeecCHHHHhcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceE
Confidence 6652111 100000 01111 1 12356667778787776543 34456899999999999887664 577
Q ss_pred EEEe
Q 039636 114 ALDL 117 (129)
Q Consensus 114 vv~~ 117 (129)
++.+
T Consensus 370 ~~~~ 373 (373)
T cd08299 370 VLTF 373 (373)
T ss_pred EEeC
Confidence 7753
No 118
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=98.10 E-value=5.8e-05 Score=53.67 Aligned_cols=112 Identities=23% Similarity=0.280 Sum_probs=74.3
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHH------------------------Hhcc-ccEEEecCCCCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVT------------------------ALKR-GQNARCSASKHET 55 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~------------------------~v~~-G~~v~~G~~~~~~ 55 (129)
+|++|++++.++ +.+.++ .+|+++++++.. .++.+ .+.. |+++.+|......
T Consensus 168 ~g~~v~~~~~~~-~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~ 244 (309)
T cd05289 168 RGARVIATASAA-NADFLR-SLGADEVIDYTK-GDFERAAAPGGVDAVLDTVGGETLARSLALVKPGGRLVSIAGPPPAE 244 (309)
T ss_pred cCCEEEEEecch-hHHHHH-HcCCCEEEeCCC-CchhhccCCCCceEEEECCchHHHHHHHHHHhcCcEEEEEcCCCcch
Confidence 478899888777 778886 899888887654 33321 0111 7777776521111
Q ss_pred C--C-CC-cceeccc-chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 56 P--R-EN-CSMWNDL-TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 56 ~--~-~~-~l~~~~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
. . .+ .+..... ...+.+.++++++.++.+.+.+...++++++.++++.+..++..||+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 309 (309)
T cd05289 245 QAAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERLESGHARGKVVL 309 (309)
T ss_pred hhhhhccceEEEEEecccHHHHHHHHHHHHCCCEEEeeccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence 0 0 01 0000000 1167889999999999998765556899999999999999888888874
No 119
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.02 E-value=0.00015 Score=52.45 Aligned_cols=47 Identities=32% Similarity=0.222 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEE
Q 039636 69 SKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQAL 115 (129)
Q Consensus 69 ~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv 115 (129)
.+.++++++++.+|.+++.+..++++++++++++.+.+++..||+|+
T Consensus 284 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~ 330 (331)
T cd08273 284 RQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESGKVVGKIVL 330 (331)
T ss_pred HHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence 56789999999999998776566899999999999999988999985
No 120
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=97.98 E-value=0.00011 Score=54.51 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=71.9
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCCcc--cHHHHhcc------------------------------ccEEE
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKEEQ--DLVTALKR------------------------------GQNAR 47 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~--~~~~~v~~------------------------------G~~v~ 47 (129)
+|+. |+++++++++.+.++ ++|+++++++++ . ++.+.+.+ |+++.
T Consensus 206 ~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~~-~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 206 AGASRIIAVDINKDKFEKAK-QLGATECINPRD-QDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred cCCCeEEEEeCCHHHHHHHH-HhCCCeeccccc-ccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEE
Confidence 4774 777777899999997 999999998765 4 44443322 45555
Q ss_pred ecCCC-CCCCCCC--cceeccc----------chHHHHHHHHHHHHcCCceee--eeeecCcccHHHHHHHHHcCCccce
Q 039636 48 CSASK-HETPREN--CSMWNDL----------TYSKFLDVVLPLIREGKIVYV--EDIVEGLENAPAALLGLFSGRNVGK 112 (129)
Q Consensus 48 ~G~~~-~~~~~~~--~l~~~~~----------~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~Gk 112 (129)
+|... ......+ .+ .+.. ...+.+.++++++.+|.+.+. ...+++++++.+|++.+.+++. -|
T Consensus 284 ~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~~ 361 (365)
T cd05279 284 VGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGES-IR 361 (365)
T ss_pred EecCCCCCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCc-ee
Confidence 54311 0111001 11 1110 345678889999999998764 4455899999999999987665 36
Q ss_pred EEE
Q 039636 113 QAL 115 (129)
Q Consensus 113 vvv 115 (129)
+++
T Consensus 362 ~~~ 364 (365)
T cd05279 362 TIL 364 (365)
T ss_pred eee
Confidence 554
No 121
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=97.89 E-value=0.0002 Score=50.73 Aligned_cols=114 Identities=19% Similarity=0.145 Sum_probs=69.9
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcC-CCEEEeCC----------------CcccH-H---HHhcc-ccEEEecCCCCCCCC
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFA-FDDAFNYK----------------EEQDL-V---TALKR-GQNARCSASKHETPR 57 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lG-ad~vi~~~----------------~~~~~-~---~~v~~-G~~v~~G~~~~~~~~ 57 (129)
+|++ |+++++++++.+.++ ++| ++.++++. ..... . +.+.. |+++.+|........
T Consensus 120 ~g~~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~ 198 (277)
T cd08255 120 AGAREVVGVDPDAARRELAE-ALGPADPVAADTADEIGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLL 198 (277)
T ss_pred cCCCcEEEECCCHHHHHHHH-HcCCCccccccchhhhcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCccc
Confidence 4777 999999999988776 777 34443321 10111 1 11222 899888762111100
Q ss_pred -------CC-cceeccc------------chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcC-CccceEEE
Q 039636 58 -------EN-CSMWNDL------------TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSG-RNVGKQAL 115 (129)
Q Consensus 58 -------~~-~l~~~~~------------~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~-~~~Gkvvv 115 (129)
.. .+..... ...+.++++++++.+|.+++.+...++++++.+|++.+..+ ....|+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~ 277 (277)
T cd08255 199 LGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECLKVVL 277 (277)
T ss_pred cHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCccccccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence 01 1111111 11357899999999999987765668999999999999876 34467653
No 122
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=97.76 E-value=0.00068 Score=48.93 Aligned_cols=48 Identities=35% Similarity=0.378 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 70 KFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 70 ~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
..+.++++++.++.+.+.....+++++++++++.+.++...||+++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 337 (337)
T cd08275 290 EVMDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337 (337)
T ss_pred HHHHHHHHHHHCCCCCCceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 457888999999998877656689999999999999988899999863
No 123
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=97.57 E-value=0.0008 Score=48.71 Aligned_cols=43 Identities=28% Similarity=0.161 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceE
Q 039636 69 SKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQ 113 (129)
Q Consensus 69 ~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkv 113 (129)
.+.++++++++.... +.+..+++++++++|++.+.+++..||+
T Consensus 282 ~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~kv 324 (325)
T cd08264 282 RKELLELVKIAKDLK--VKVWKTFKLEEAKEALKELFSKERDGRI 324 (325)
T ss_pred HHHHHHHHHHHHcCC--ceeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence 467888999986444 3444568999999999999988887875
No 124
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=97.56 E-value=0.00079 Score=48.60 Aligned_cols=50 Identities=26% Similarity=0.224 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCc-cceEEEEe
Q 039636 68 YSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRN-VGKQALDL 117 (129)
Q Consensus 68 ~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~-~Gkvvv~~ 117 (129)
..+.+.++..|++.|.|+.+.....+|++...|++....... .||-++.+
T Consensus 302 ~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~ 352 (354)
T KOG0025|consen 302 RKEMIDELCDLYRRGKLKAPNCEKVPLADHKTALDAALSKFGKSGKQIIVL 352 (354)
T ss_pred HHHHHHHHHHHHHcCeeccccceeeechhhhHHHHHHHHHhccCCceEEEe
Confidence 457889999999999998887665699998888887766432 35665554
No 125
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=97.55 E-value=0.00028 Score=50.41 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=25.6
Q ss_pred CCcE-EEEEeCChHHHHHHHHhcCCCEEEeCCC
Q 039636 1 MGCY-VVGSAGSKEKIERLKNKFAFDDAFNYKE 32 (129)
Q Consensus 1 ~Ga~-Vi~t~~s~~k~~~~~~~lGad~vi~~~~ 32 (129)
+|++ |++++.+++|.++++ ++|+++++++.+
T Consensus 143 ~G~~~Vi~~~~~~~r~~~a~-~~Ga~~~i~~~~ 174 (280)
T TIGR03366 143 AGAARVVAADPSPDRRELAL-SFGATALAEPEV 174 (280)
T ss_pred cCCCEEEEECCCHHHHHHHH-HcCCcEecCchh
Confidence 4775 888888899999987 999999988643
No 126
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=96.75 E-value=0.0031 Score=46.30 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 69 SKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 69 ~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
.+.++++++++.+|.+++.+...++++++++|++.+.+++..||+++++
T Consensus 304 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 352 (352)
T cd08247 304 ADWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGKVVIKV 352 (352)
T ss_pred HHHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 3568889999999999887666689999999999999999999999864
No 127
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=96.22 E-value=0.038 Score=39.93 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=24.8
Q ss_pred CCcEEEEEe--CChHHHHHHHHhcCCCEEEeCCCcccHHHHh
Q 039636 1 MGCYVVGSA--GSKEKIERLKNKFAFDDAFNYKEEQDLVTAL 40 (129)
Q Consensus 1 ~Ga~Vi~t~--~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v 40 (129)
+|++|++++ +++++.+.++ ++|++++ ++.. .++.+.+
T Consensus 187 ~G~~v~~~~~~~~~~~~~~~~-~~g~~~~-~~~~-~~~~~~l 225 (306)
T cd08258 187 QGATVVVVGTEKDEVRLDVAK-ELGADAV-NGGE-EDLAELV 225 (306)
T ss_pred cCCEEEEECCCCCHHHHHHHH-HhCCccc-CCCc-CCHHHHH
Confidence 478887763 3455677776 8899888 7765 5555444
No 128
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.35 E-value=0.38 Score=36.74 Aligned_cols=115 Identities=10% Similarity=-0.048 Sum_probs=65.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCC------------CEEEeCCCccc-HHHH-hc---c-ccEEEecCCCCCCCCCCcce
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAF------------DDAFNYKEEQD-LVTA-LK---R-GQNARCSASKHETPRENCSM 62 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGa------------d~vi~~~~~~~-~~~~-v~---~-G~~v~~G~~~~~~~~~~~l~ 62 (129)
+||+|+++..++.+.+.++ .+|+ |.||+...+.. +... +. . |+++.+|..... ...+.+.
T Consensus 224 ~Ga~ViV~d~d~~R~~~A~-~~G~~~~~~~e~v~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~e-Id~~~L~ 301 (413)
T cd00401 224 QGARVIVTEVDPICALQAA-MEGYEVMTMEEAVKEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVE-IDVKGLK 301 (413)
T ss_pred CCCEEEEEECChhhHHHHH-hcCCEEccHHHHHcCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCc-cCHHHHH
Confidence 5899999988888888876 7775 44454433222 2222 21 1 566677752111 1111122
Q ss_pred eccc-------chHH-HHH--HHHHHHHcCCc-eeeeee--e-----cCcc-cHHHHHHHHHcCCc-cceEEEEe
Q 039636 63 WNDL-------TYSK-FLD--VVLPLIREGKI-VYVEDI--V-----EGLE-NAPAALLGLFSGRN-VGKQALDL 117 (129)
Q Consensus 63 ~~~~-------~~~~-~~~--~~~~~~~~g~i-~~~~~~--~-----~~l~-~~~~a~~~~~~~~~-~Gkvvv~~ 117 (129)
.+.. ...+ .+. +.+.++.+|.+ ....-. . ++|+ |+.++++.+.++.. .-|+++..
T Consensus 302 ~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p 376 (413)
T cd00401 302 ENAVEVVNIKPQVDRYELPDGRRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLP 376 (413)
T ss_pred hhccEEEEccCCcceEEcCCcchhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECC
Confidence 1111 1111 344 68999999998 332211 2 5788 99999999987653 34666554
No 129
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.48 E-value=0.64 Score=32.19 Aligned_cols=37 Identities=35% Similarity=0.510 Sum_probs=29.6
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHH
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTA 39 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~ 39 (129)
+|++|+++++++++.+.++ .+|+++++++.. .++.+.
T Consensus 157 ~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~ 193 (271)
T cd05188 157 AGARVIVTDRSDEKLELAK-ELGADHVIDYKE-EDLEEE 193 (271)
T ss_pred cCCeEEEEcCCHHHHHHHH-HhCCceeccCCc-CCHHHH
Confidence 4789999999998889887 899999988776 555544
No 130
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.74 E-value=1.5 Score=34.55 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=25.0
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEE-EeC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDA-FNY 30 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~v-i~~ 30 (129)
+||+|++++.++++++.++ ++|++++ +|.
T Consensus 187 lGA~V~a~D~~~~rle~ae-slGA~~v~i~~ 216 (509)
T PRK09424 187 LGAIVRAFDTRPEVAEQVE-SMGAEFLELDF 216 (509)
T ss_pred CCCEEEEEeCCHHHHHHHH-HcCCeEEEecc
Confidence 5899999999999999997 9999855 654
No 131
>PRK04148 hypothetical protein; Provisional
Probab=71.40 E-value=10 Score=24.48 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=8.0
Q ss_pred CcEEEEEeCChHHHHHHH
Q 039636 2 GCYVVGSAGSKEKIERLK 19 (129)
Q Consensus 2 Ga~Vi~t~~s~~k~~~~~ 19 (129)
|..|++++.+++..+.++
T Consensus 39 G~~ViaIDi~~~aV~~a~ 56 (134)
T PRK04148 39 GFDVIVIDINEKAVEKAK 56 (134)
T ss_pred CCEEEEEECCHHHHHHHH
Confidence 344444444444444443
No 132
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=68.56 E-value=19 Score=25.76 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=25.4
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCC----CEEEeCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAF----DDAFNYKE 32 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGa----d~vi~~~~ 32 (129)
.|++|+.+.+..++++.+..+++. ...+|-++
T Consensus 29 ~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD 64 (246)
T COG4221 29 AGAKVVLAARREERLEALADEIGAGAALALALDVTD 64 (246)
T ss_pred CCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCC
Confidence 389999999999999888878983 34466665
No 133
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.47 E-value=30 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=23.4
Q ss_pred CcEEEEEeCChHHHHHHHHhcCC-CEEEeCCC
Q 039636 2 GCYVVGSAGSKEKIERLKNKFAF-DDAFNYKE 32 (129)
Q Consensus 2 Ga~Vi~t~~s~~k~~~~~~~lGa-d~vi~~~~ 32 (129)
|+.|+|++++-+.+..+..++|. ..=+|-++
T Consensus 32 G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~ 63 (289)
T KOG1209|consen 32 GYLVYATARRLEPMAQLAIQFGLKPYKLDVSK 63 (289)
T ss_pred CeEEEEEccccchHhhHHHhhCCeeEEeccCC
Confidence 89999999999888776557886 33356555
No 134
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=55.35 E-value=18 Score=25.24 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=26.5
Q ss_pred Cc-EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc
Q 039636 2 GC-YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR 42 (129)
Q Consensus 2 Ga-~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~ 42 (129)
|. +|++-+.+++..+.++ .+|+++++++. ..+...+..
T Consensus 92 gv~~viar~~~~~~~~~~~-~~g~~~ii~Pe--~~~~~~l~~ 130 (225)
T COG0569 92 GVPRVIARARNPEHEKVLE-KLGADVIISPE--KLAAKRLAR 130 (225)
T ss_pred CCCcEEEEecCHHHHHHHH-HcCCcEEECHH--HHHHHHHHH
Confidence 54 6888888888778776 88888888653 245544443
No 135
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=51.73 E-value=25 Score=27.90 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=22.0
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEE
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDA 27 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~v 27 (129)
+|+.|++.+.++++++.++ ++|++.+
T Consensus 186 lGA~V~v~d~~~~rle~a~-~lGa~~v 211 (511)
T TIGR00561 186 LGAIVRAFDTRPEVKEQVQ-SMGAEFL 211 (511)
T ss_pred CCCEEEEEeCCHHHHHHHH-HcCCeEE
Confidence 5889999999999988887 8998763
No 136
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=51.58 E-value=23 Score=28.12 Aligned_cols=28 Identities=4% Similarity=0.061 Sum_probs=22.1
Q ss_pred cEEEEEeCChHHHHHHHHhcCCCEEEeCC
Q 039636 3 CYVVGSAGSKEKIERLKNKFAFDDAFNYK 31 (129)
Q Consensus 3 a~Vi~t~~s~~k~~~~~~~lGad~vi~~~ 31 (129)
.++++-+.+++..+.++ +.|+|+++++.
T Consensus 509 ~~iiar~~~~~~~~~l~-~~Gad~vv~p~ 536 (558)
T PRK10669 509 IEIIARAHYDDEVAYIT-ERGANQVVMGE 536 (558)
T ss_pred CeEEEEECCHHHHHHHH-HcCCCEEEChH
Confidence 46788888887778787 89999999754
No 137
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=51.46 E-value=33 Score=24.98 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEEeCChHHHHHHHHhcCCCEEEeCCC
Q 039636 4 YVVGSAGSKEKIERLKNKFAFDDAFNYKE 32 (129)
Q Consensus 4 ~Vi~t~~s~~k~~~~~~~lGad~vi~~~~ 32 (129)
.|+++.+ +++.+.++ ++|+++++++.+
T Consensus 180 ~v~~~~~-~~~~~~~~-~~g~~~~i~~~~ 206 (352)
T cd08247 180 TVVGTCS-SRSAELNK-KLGADHFIDYDA 206 (352)
T ss_pred eEEEEeC-hhHHHHHH-HhCCCEEEecCC
Confidence 5777764 55566776 899999998766
No 138
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.27 E-value=15 Score=28.10 Aligned_cols=48 Identities=17% Similarity=0.039 Sum_probs=30.4
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCC-EEEeCCCcccHHHHhcc---------------ccEEEecC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFD-DAFNYKEEQDLVTALKR---------------GQNARCSA 50 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad-~vi~~~~~~~~~~~v~~---------------G~~v~~G~ 50 (129)
+|++|+++.+++.+....+ ..+.+ .++|.+. ..+.+.+.. |+++.+|.
T Consensus 61 ~g~~v~~~~~~~~~~~~~~-~~~~~~~~~d~~~-~~~~~~l~~~~~~~~~~l~~l~~~griv~i~s 124 (450)
T PRK08261 61 LGYDVVANNDGGLTWAAGW-GDRFGALVFDATG-ITDPADLKALYEFFHPVLRSLAPCGRVVVLGR 124 (450)
T ss_pred CCCeeeecCccccccccCc-CCcccEEEEECCC-CCCHHHHHHHHHHHHHHHHhccCCCEEEEEcc
Confidence 4889998877766554444 55665 6777765 333333322 88888876
No 139
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=46.76 E-value=43 Score=24.91 Aligned_cols=26 Identities=8% Similarity=-0.052 Sum_probs=21.9
Q ss_pred CcEEEEEeCChHHHHHHHHhcCCCEEE
Q 039636 2 GCYVVGSAGSKEKIERLKNKFAFDDAF 28 (129)
Q Consensus 2 Ga~Vi~t~~s~~k~~~~~~~lGad~vi 28 (129)
|.+|+.++.|.+....+. +.|+|.++
T Consensus 103 Gi~v~~~v~s~~~A~~a~-~~GaD~vV 128 (320)
T cd04743 103 GISTYLHVPSPGLLKQFL-ENGARKFI 128 (320)
T ss_pred CCEEEEEeCCHHHHHHHH-HcCCCEEE
Confidence 788999998888777776 89999887
No 140
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=44.82 E-value=5.9 Score=29.96 Aligned_cols=45 Identities=9% Similarity=-0.139 Sum_probs=30.7
Q ss_pred HHHHHHHHHc---CCceeeeeeecCcccHHHHHHHHHcCCccceEEEEeC
Q 039636 72 LDVVLPLIRE---GKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDLD 118 (129)
Q Consensus 72 ~~~~~~~~~~---g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~~ 118 (129)
+.++++.+.. |++-..++.+++|.++.|+++++..+. ||+|+.++
T Consensus 349 ~~~A~~~~~~~~~gKvvl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 396 (410)
T cd08238 349 AAETTLNLPGIPGGKKLIYTQKPLPLTGIEELADKEPEEP--AAIVLENG 396 (410)
T ss_pred HHHHHHHhhccCCceEEEECCCCCCCchhHhhHhhcCCCh--HHHHHhcC
Confidence 4555555552 223233344579999999999998776 88888775
No 141
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=42.99 E-value=53 Score=24.27 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=21.0
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEE
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAF 28 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi 28 (129)
.|..|+.++++.+....+. +.|+|.++
T Consensus 135 ~gi~v~~~v~s~~~A~~a~-~~G~D~iv 161 (330)
T PF03060_consen 135 AGIKVIPQVTSVREARKAA-KAGADAIV 161 (330)
T ss_dssp TT-EEEEEESSHHHHHHHH-HTT-SEEE
T ss_pred cCCccccccCCHHHHHHhh-hcCCCEEE
Confidence 3778999999998888776 88999887
No 142
>PRK10537 voltage-gated potassium channel; Provisional
Probab=42.37 E-value=42 Score=25.63 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=21.7
Q ss_pred cEEEEEeCChHHHHHHHHhcCCCEEEeCC
Q 039636 3 CYVVGSAGSKEKIERLKNKFAFDDAFNYK 31 (129)
Q Consensus 3 a~Vi~t~~s~~k~~~~~~~lGad~vi~~~ 31 (129)
+++++.+.+++..+.++ +.|+|.++++.
T Consensus 330 ~kIIa~v~~~~~~~~L~-~~GaD~VIsp~ 357 (393)
T PRK10537 330 VKTVAAVNDSKNLEKIK-RVHPDMIFSPQ 357 (393)
T ss_pred CcEEEEECCHHHHHHHH-hcCCCEEECHH
Confidence 46777787887778887 88998888754
No 143
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=40.29 E-value=54 Score=24.62 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCcEEEEEeCChH---HHHHHHHhcCCCEEEeCCCcccHHHHhcc
Q 039636 1 MGCYVVGSAGSKE---KIERLKNKFAFDDAFNYKEEQDLVTALKR 42 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~---k~~~~~~~lGad~vi~~~~~~~~~~~v~~ 42 (129)
+|.+|.+--+-+. |.+++| +.|+. |+.|.+ ++..++.+
T Consensus 182 lGF~vtVHMSADAr~WKKd~LR-s~gV~-ViEYe~--DY~~AVee 222 (443)
T COG3048 182 LGFKVTVHMSADARAWKKDKLR-SHGVT-VVEYEQ--DYGVAVEE 222 (443)
T ss_pred hcceEEEEecchHHHHHHHHHH-hcCce-EEEecc--hhhHHHHH
Confidence 3666665555454 446777 88876 666754 55555444
No 144
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=39.78 E-value=1.1e+02 Score=20.81 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=28.2
Q ss_pred CcEEEEEeCChH-HHHHHHHhcCCCEEEeCCCcccHH----HHhcc-----ccEEEecC
Q 039636 2 GCYVVGSAGSKE-KIERLKNKFAFDDAFNYKEEQDLV----TALKR-----GQNARCSA 50 (129)
Q Consensus 2 Ga~Vi~t~~s~~-k~~~~~~~lGad~vi~~~~~~~~~----~~v~~-----G~~v~~G~ 50 (129)
|++|+.++.+.+ +.....+.+|++.+.-... ++. .++.+ -.++.+|.
T Consensus 62 gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~K--P~~~~fr~Al~~m~l~~~~vvmVGD 118 (175)
T COG2179 62 GIKVVVVSNNKESRVARAAEKLGVPFIYRAKK--PFGRAFRRALKEMNLPPEEVVMVGD 118 (175)
T ss_pred CCEEEEEeCCCHHHHHhhhhhcCCceeecccC--ccHHHHHHHHHHcCCChhHEEEEcc
Confidence 677776665444 4454445899998876655 343 34433 45566665
No 145
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=37.19 E-value=99 Score=23.34 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=15.3
Q ss_pred CCcEEEEEeCChHHHHHHHHhcC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFA 23 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lG 23 (129)
+|++|++++.++++.+.+.+.+|
T Consensus 189 lGa~V~v~d~~~~~~~~l~~~~g 211 (370)
T TIGR00518 189 LGATVTILDINIDRLRQLDAEFG 211 (370)
T ss_pred CCCeEEEEECCHHHHHHHHHhcC
Confidence 58888888888776655432333
No 146
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=36.38 E-value=57 Score=24.09 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=25.2
Q ss_pred EEEEEeCChHHHHHHHHhcCCCEEEeCCC-----cccHHHHhcc
Q 039636 4 YVVGSAGSKEKIERLKNKFAFDDAFNYKE-----EQDLVTALKR 42 (129)
Q Consensus 4 ~Vi~t~~s~~k~~~~~~~lGad~vi~~~~-----~~~~~~~v~~ 42 (129)
.|++++.++.-.++++ ++|++.|++-.+ ..++.+.+.+
T Consensus 98 ~vVAv~~g~g~~~lf~-~~Gv~~vi~ggqt~nPS~~dl~~Ai~~ 140 (313)
T PF13684_consen 98 GVVAVAPGEGLAELFR-SLGVDVVISGGQTMNPSTEDLLNAIEK 140 (313)
T ss_pred EEEEEecCccHHHHHH-hCCCeEEEeCCCCCCCCHHHHHHHHHh
Confidence 5777777666556665 999999986432 1355556655
No 147
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.99 E-value=78 Score=21.88 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.0
Q ss_pred CCcEEEEEeCChHHHHHHH
Q 039636 1 MGCYVVGSAGSKEKIERLK 19 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~ 19 (129)
.||+||+++++++.+.-+.
T Consensus 30 aGA~ViAvaR~~a~L~sLV 48 (245)
T KOG1207|consen 30 AGAQVIAVARNEANLLSLV 48 (245)
T ss_pred cCCEEEEEecCHHHHHHHH
Confidence 4899999999999887665
No 148
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=34.24 E-value=78 Score=21.56 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=17.8
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFD 25 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad 25 (129)
.|++|++++.++++.+.+.+.+|+.
T Consensus 50 ~G~~Vvv~D~~~~~~~~~~~~~g~~ 74 (200)
T cd01075 50 EGAKLIVADINEEAVARAAELFGAT 74 (200)
T ss_pred CCCEEEEEcCCHHHHHHHHHHcCCE
Confidence 4788988888887777665455653
No 149
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=31.41 E-value=1.4e+02 Score=20.61 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=29.6
Q ss_pred EEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhcc-ccEEEecC
Q 039636 6 VGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKR-GQNARCSA 50 (129)
Q Consensus 6 i~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~-G~~v~~G~ 50 (129)
.+|+.+.+..+.+. ..|++.++....+.++.+.... |..+..|.
T Consensus 67 aGTV~~~~~~~~a~-~aGA~fivsp~~~~~v~~~~~~~~~~~~~G~ 111 (206)
T PRK09140 67 AGTVLSPEQVDRLA-DAGGRLIVTPNTDPEVIRRAVALGMVVMPGV 111 (206)
T ss_pred EEecCCHHHHHHHH-HcCCCEEECCCCCHHHHHHHHHCCCcEEccc
Confidence 35667788888888 8999988876543455554443 66655554
No 150
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=31.05 E-value=1.4e+02 Score=21.54 Aligned_cols=9 Identities=0% Similarity=0.183 Sum_probs=4.3
Q ss_pred hcCCCEEEe
Q 039636 21 KFAFDDAFN 29 (129)
Q Consensus 21 ~lGad~vi~ 29 (129)
++|.+..+.
T Consensus 154 ~LGm~~LVE 162 (254)
T COG0134 154 ELGMEVLVE 162 (254)
T ss_pred HcCCeeEEE
Confidence 455554443
No 151
>PRK05693 short chain dehydrogenase; Provisional
Probab=30.15 E-value=1.5e+02 Score=20.64 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=21.8
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEE-EeCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDA-FNYKE 32 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~v-i~~~~ 32 (129)
.|++|++++++.++.+.+. ..++..+ .|..+
T Consensus 24 ~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dl~~ 55 (274)
T PRK05693 24 AGYEVWATARKAEDVEALA-AAGFTAVQLDVND 55 (274)
T ss_pred CCCEEEEEeCCHHHHHHHH-HCCCeEEEeeCCC
Confidence 3789999998888777665 5566544 46555
No 152
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=29.87 E-value=95 Score=22.62 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=16.2
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAF 24 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGa 24 (129)
+|++|++.++++++.+.+. ++|+
T Consensus 174 ~Ga~V~v~~r~~~~~~~~~-~~G~ 196 (296)
T PRK08306 174 LGANVTVGARKSAHLARIT-EMGL 196 (296)
T ss_pred CCCEEEEEECCHHHHHHHH-HcCC
Confidence 4788888888877666554 5554
No 153
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=29.83 E-value=2.1e+02 Score=20.68 Aligned_cols=50 Identities=12% Similarity=-0.060 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEe
Q 039636 67 TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDL 117 (129)
Q Consensus 67 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~ 117 (129)
...+.+.++.+.+.+..++|.... |....+..+...+.+|-..+.+.+.+
T Consensus 123 n~~~~~~~~~~~~~e~Gi~pe~ev-~d~~~l~~~~~l~~~G~l~~p~~~~~ 172 (272)
T PF05853_consen 123 NTPADARELARRMRERGIKPEIEV-FDPGHLRNARRLIEKGLLPGPLLVNF 172 (272)
T ss_dssp --HHHHHHHHHHHHHTT-EEEEEE-SSHHHHHHHHHHHHTTSS-SSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEE-EcHHHHHHHHHHHHCCCCCCCeEEEE
Confidence 346778889999999999998776 88888888888888877666665554
No 154
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=29.09 E-value=1.5e+02 Score=22.41 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=27.5
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCC-EEEeCCCcccHHHHhcc
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFD-DAFNYKEEQDLVTALKR 42 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad-~vi~~~~~~~~~~~v~~ 42 (129)
+||.|...+.+.+|++.+...+|-. +++-++. .++.+.+.+
T Consensus 190 lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~-~~iee~v~~ 231 (371)
T COG0686 190 LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTP-SNIEEAVKK 231 (371)
T ss_pred cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCH-HHHHHHhhh
Confidence 5788888888888888776445554 3343333 467777766
No 155
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=28.21 E-value=93 Score=24.92 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=24.8
Q ss_pred EEEEEeCChHHHHHHHHhcCCCEEEeCCC--c---ccHHHHhcc
Q 039636 4 YVVGSAGSKEKIERLKNKFAFDDAFNYKE--E---QDLVTALKR 42 (129)
Q Consensus 4 ~Vi~t~~s~~k~~~~~~~lGad~vi~~~~--~---~~~~~~v~~ 42 (129)
-+++++..+--.++++ ++|++.|+.-.+ + .++.+.+.+
T Consensus 316 ~ivAv~~g~g~~~~f~-~~Ga~~vi~ggqt~nPS~~dll~ai~~ 358 (530)
T TIGR03599 316 AIVAVAPGEGIAELFK-SLGADVVIEGGQTMNPSTEDILKAIEK 358 (530)
T ss_pred EEEEEcCCchHHHHHH-HCCCCEEEeCCCCCCCCHHHHHHHHHh
Confidence 3677776666667776 999998885332 1 355555555
No 156
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=28.08 E-value=1.2e+02 Score=22.37 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=20.8
Q ss_pred CcEEEEEeCChHHHHHHHHhcCCCEEE
Q 039636 2 GCYVVGSAGSKEKIERLKNKFAFDDAF 28 (129)
Q Consensus 2 Ga~Vi~t~~s~~k~~~~~~~lGad~vi 28 (129)
|..|++.+++.+....+. +.|+|.++
T Consensus 109 g~~v~~~v~s~~~a~~a~-~~GaD~Iv 134 (307)
T TIGR03151 109 GVKVIPVVASVALAKRME-KAGADAVI 134 (307)
T ss_pred CCEEEEEcCCHHHHHHHH-HcCCCEEE
Confidence 678888888887777775 88999886
No 157
>PF13065 DUF3928: Protein of unknown function (DUF3928)
Probab=25.83 E-value=1.4e+02 Score=17.21 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHH
Q 039636 67 TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLF 105 (129)
Q Consensus 67 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~ 105 (129)
...+.++++.+++.-|.+.-. .+.=+++.+||+..+
T Consensus 56 e~~kalqeiarlvelgrftyv---hyrn~eie~afeavk 91 (95)
T PF13065_consen 56 EQQKALQEIARLVELGRFTYV---HYRNEEIEKAFEAVK 91 (95)
T ss_pred HHHHHHHHHHHHHHhcceeEE---EeccHHHHHHHHHHh
Confidence 557789999999999998654 356678888887654
No 158
>COG2969 SspB Stringent starvation protein B [General function prediction only]
Probab=25.25 E-value=1.5e+02 Score=19.42 Aligned_cols=48 Identities=8% Similarity=0.080 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHHcCCccceEEEEeCCC
Q 039636 69 SKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLFSGRNVGKQALDLDSC 120 (129)
Q Consensus 69 ~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~Gkvvv~~~~~ 120 (129)
...+....+|+-...+.|.+.+-..+..+.=-.++.++ |.||+.+...
T Consensus 10 PYLlRA~yeWl~DN~~TPhlvVd~t~~Gv~VP~eyvkD----gqIVLNvs~~ 57 (155)
T COG2969 10 PYLLRALYEWLLDNQLTPHLVVDVTLPGVKVPMEYVRD----GQIVLNIAPR 57 (155)
T ss_pred chHHHHHHHHHhcCCCCceEEEEccccCccCCHHHccC----CeEEEEeCcc
Confidence 45677889999999999987653233333323344443 6788887643
No 159
>PRK08017 oxidoreductase; Provisional
Probab=25.22 E-value=1.3e+02 Score=20.52 Aligned_cols=30 Identities=13% Similarity=0.457 Sum_probs=21.9
Q ss_pred CcEEEEEeCChHHHHHHHHhcCCCEE-EeCCC
Q 039636 2 GCYVVGSAGSKEKIERLKNKFAFDDA-FNYKE 32 (129)
Q Consensus 2 Ga~Vi~t~~s~~k~~~~~~~lGad~v-i~~~~ 32 (129)
|++|+++++++++.+.++ ..|+..+ .|..+
T Consensus 26 g~~v~~~~r~~~~~~~~~-~~~~~~~~~D~~~ 56 (256)
T PRK08017 26 GYRVLAACRKPDDVARMN-SLGFTGILLDLDD 56 (256)
T ss_pred CCEEEEEeCCHHHhHHHH-hCCCeEEEeecCC
Confidence 789999999888887776 6787544 34443
No 160
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=25.08 E-value=89 Score=19.00 Aligned_cols=29 Identities=24% Similarity=0.172 Sum_probs=22.9
Q ss_pred ecCcccHHHHHHHHHcCCccceEEEEeCCC
Q 039636 91 VEGLENAPAALLGLFSGRNVGKQALDLDSC 120 (129)
Q Consensus 91 ~~~l~~~~~a~~~~~~~~~~Gkvvv~~~~~ 120 (129)
.||.+++.+++..+.+ ...+++|+++.+.
T Consensus 7 HYp~~d~~~~l~~La~-~t~~~~ifTfAP~ 35 (97)
T PF07109_consen 7 HYPAEDAAQMLAHLAS-RTRGSLIFTFAPR 35 (97)
T ss_pred ccCHHHHHHHHHHHHH-hccCcEEEEECCC
Confidence 4789999999998875 4468999998753
No 161
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=23.77 E-value=1.4e+02 Score=22.45 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHH
Q 039636 67 TYSKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLF 105 (129)
Q Consensus 67 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~ 105 (129)
...+.+..+.+++.+|.+...-...++.+++.+|+....
T Consensus 142 piee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~ 180 (336)
T KOG1575|consen 142 PIEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAP 180 (336)
T ss_pred CHHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcC
Confidence 668899999999999999988777789999999988754
No 162
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=23.51 E-value=2.2e+02 Score=21.14 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=19.7
Q ss_pred CCcEEEEEe---CChHHHHHHHHhcCCCEEEeCC
Q 039636 1 MGCYVVGSA---GSKEKIERLKNKFAFDDAFNYK 31 (129)
Q Consensus 1 ~Ga~Vi~t~---~s~~k~~~~~~~lGad~vi~~~ 31 (129)
+|++++.+. -|.+|.+.++ .+||.-++-..
T Consensus 84 ~Gy~~iivmP~~~S~er~~~l~-a~GAevi~t~~ 116 (300)
T COG0031 84 KGYRLIIVMPETMSQERRKLLR-ALGAEVILTPG 116 (300)
T ss_pred cCCcEEEEeCCCCCHHHHHHHH-HcCCEEEEcCC
Confidence 366655544 3667778887 88887666544
No 163
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=23.47 E-value=1.7e+02 Score=20.41 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=21.1
Q ss_pred CcEEEEEeCChHHHHHHHHhcCCCEEEe
Q 039636 2 GCYVVGSAGSKEKIERLKNKFAFDDAFN 29 (129)
Q Consensus 2 Ga~Vi~t~~s~~k~~~~~~~lGad~vi~ 29 (129)
|.+++...+++.+.++.+ .+|.+..+-
T Consensus 9 ~~riiL~S~s~rrk~i~~-~~G~~~~~~ 35 (209)
T KOG1509|consen 9 GKRIILASASPRRKQILA-EMGLNLEVV 35 (209)
T ss_pred CcEEEEecCCchHHHHHH-HcCCceEEE
Confidence 568888888888888876 999976654
No 164
>PRK00648 Maf-like protein; Reviewed
Probab=22.73 E-value=1.7e+02 Score=19.89 Aligned_cols=27 Identities=19% Similarity=0.189 Sum_probs=19.7
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEE
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAF 28 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi 28 (129)
++.++|--+.|+.++++++ ++|.+..+
T Consensus 1 ~~~~lILAS~SprR~elL~-~~g~~f~v 27 (191)
T PRK00648 1 MKYKIILASSSPRRKEILE-GFRIPFEV 27 (191)
T ss_pred CCCcEEEeCCCHHHHHHHH-HCCCCeEE
Confidence 3566666667888889987 99986543
No 165
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=22.53 E-value=1.8e+02 Score=22.68 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=49.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEEEeCCCccc-HHHHhccccEEEecCCC---CCCCC----CCccee-ccc---ch
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDAFNYKEEQD-LVTALKRGQNARCSASK---HETPR----ENCSMW-NDL---TY 68 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~-~~~~v~~G~~v~~G~~~---~~~~~----~~~l~~-~~~---~~ 68 (129)
.|++|++.+.++.+.+.+ .-|-.++..... +. +.+.+..|++-....+. ..... +-++-. +++ ..
T Consensus 31 ~G~~ViG~DIn~~~Vd~l--n~G~~~i~e~~~-~~~v~~~v~~g~lraTtd~~~l~~~dv~iI~VPTPl~~~~~pDls~v 107 (436)
T COG0677 31 AGFKVIGVDINQKKVDKL--NRGESYIEEPDL-DEVVKEAVESGKLRATTDPEELKECDVFIICVPTPLKKYREPDLSYV 107 (436)
T ss_pred cCCceEeEeCCHHHHHHH--hCCcceeecCcH-HHHHHHHHhcCCceEecChhhcccCCEEEEEecCCcCCCCCCChHHH
Confidence 378999999999999887 468888886543 33 34455556653221100 00000 001111 222 34
Q ss_pred HHHHHHHHHHHHcCCceeeeee
Q 039636 69 SKFLDVVLPLIREGKIVYVEDI 90 (129)
Q Consensus 69 ~~~~~~~~~~~~~g~i~~~~~~ 90 (129)
....+.+.+.++.|.+-...+.
T Consensus 108 ~~aa~sIa~~L~kG~LVIlEST 129 (436)
T COG0677 108 ESAARSIAPVLKKGDLVILEST 129 (436)
T ss_pred HHHHHHHHHhcCCCCEEEEecC
Confidence 5556777778888888655443
No 166
>PRK05993 short chain dehydrogenase; Provisional
Probab=22.28 E-value=2.2e+02 Score=19.91 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=22.1
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEE-EeCCC
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDA-FNYKE 32 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~v-i~~~~ 32 (129)
.|++|+++++++++.+.+. ..|+..+ .|..+
T Consensus 27 ~G~~Vi~~~r~~~~~~~l~-~~~~~~~~~Dl~d 58 (277)
T PRK05993 27 DGWRVFATCRKEEDVAALE-AEGLEAFQLDYAE 58 (277)
T ss_pred CCCEEEEEECCHHHHHHHH-HCCceEEEccCCC
Confidence 3789999999888877765 5566544 45554
No 167
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=22.14 E-value=1.6e+02 Score=19.12 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=25.3
Q ss_pred EEEEEeCChHHHHHHHHhcCCCEEEeCCCcccHHHHhccccE
Q 039636 4 YVVGSAGSKEKIERLKNKFAFDDAFNYKEEQDLVTALKRGQN 45 (129)
Q Consensus 4 ~Vi~t~~s~~k~~~~~~~lGad~vi~~~~~~~~~~~v~~G~~ 45 (129)
+|.+.+..+...+.++ +.||+ ++. . +++.+.+.+|.+
T Consensus 54 kV~Vf~~~~~~~~~Ak-~aGa~-~vg--~-edLi~~i~~g~~ 90 (141)
T TIGR01170 54 KIAVFTKGASEVEEAR-EAGAD-YVG--G-DDLIKKIEDGEI 90 (141)
T ss_pred EEEEECCChHHHHHHH-HcCCC-EeC--H-HHHHHHHhcCCc
Confidence 5666666665567787 89999 453 2 578778777664
No 168
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=21.57 E-value=2.2e+02 Score=21.46 Aligned_cols=21 Identities=10% Similarity=0.272 Sum_probs=10.2
Q ss_pred hcCCCEEEeCCCcccHHHHhc
Q 039636 21 KFAFDDAFNYKEEQDLVTALK 41 (129)
Q Consensus 21 ~lGad~vi~~~~~~~~~~~v~ 41 (129)
++|.+..+.-++.+++...+.
T Consensus 228 ~LGme~LVEVH~~~ElerAl~ 248 (338)
T PLN02460 228 SLGMAALIEVHDEREMDRVLG 248 (338)
T ss_pred HcCCeEEEEeCCHHHHHHHHh
Confidence 566666655444233443333
No 169
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.55 E-value=1.6e+02 Score=17.40 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=12.7
Q ss_pred CcccHHHHHHHHHcCCccceEEEEeCC
Q 039636 93 GLENAPAALLGLFSGRNVGKQALDLDS 119 (129)
Q Consensus 93 ~l~~~~~a~~~~~~~~~~Gkvvv~~~~ 119 (129)
.++++.+-+-.+.....-|++|+.+-|
T Consensus 64 diEki~~~llEl~He~~eg~~v~e~~D 90 (91)
T COG4013 64 DIEKILDDLLELVHENGEGRVVLEFYD 90 (91)
T ss_pred EHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 444444433333333444566666543
No 170
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=21.13 E-value=1.5e+02 Score=21.30 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=26.7
Q ss_pred CCcEEEEEeCChHHHHHHHHhcCCCEE--EeCCCcccHHHHhcc-ccE
Q 039636 1 MGCYVVGSAGSKEKIERLKNKFAFDDA--FNYKEEQDLVTALKR-GQN 45 (129)
Q Consensus 1 ~Ga~Vi~t~~s~~k~~~~~~~lGad~v--i~~~~~~~~~~~v~~-G~~ 45 (129)
+||.|++++-+++-.+.++ ......- +||.. ....+-... |++
T Consensus 80 ~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~-~~~edl~~~~~~F 125 (243)
T COG2227 80 LGASVTGIDASEKPIEVAK-LHALESGVNIDYRQ-ATVEDLASAGGQF 125 (243)
T ss_pred CCCeeEEecCChHHHHHHH-Hhhhhccccccchh-hhHHHHHhcCCCc
Confidence 5899999999998888876 4332211 66776 333333333 555
No 171
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=21.11 E-value=1.8e+02 Score=21.32 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHH
Q 039636 69 SKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLG 103 (129)
Q Consensus 69 ~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~ 103 (129)
.+.|..|-++..+|.++..-.+.|..+.+.++++.
T Consensus 120 ~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~ 154 (280)
T COG0656 120 EETWKALEELVDEGLIRAIGVSNFGVEHLEELLSL 154 (280)
T ss_pred HHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHh
Confidence 48899999999999998887777888888888776
No 172
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.62 E-value=2.6e+02 Score=19.23 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCceeeeeeecCcccHHHHHHHHH-cCCccceEEEEeCCC
Q 039636 69 SKFLDVVLPLIREGKIVYVEDIVEGLENAPAALLGLF-SGRNVGKQALDLDSC 120 (129)
Q Consensus 69 ~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~-~~~~~Gkvvv~~~~~ 120 (129)
.+.++.+..++.+-++-..-+.|- +-+..|+++++ +.+...|+||-+.|.
T Consensus 71 ~~~~~~l~~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~~~a~~kvvILLTDG 121 (191)
T cd01455 71 KERLETLKMMHAHSQFCWSGDHTV--EATEFAIKELAAKEDFDEAIVIVLSDA 121 (191)
T ss_pred hhHHHHHHHHHHhcccCccCccHH--HHHHHHHHHHHhcCcCCCcEEEEEeCC
Confidence 333444555555444433333333 88889999998 777788999998764
No 173
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=20.57 E-value=82 Score=18.29 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHHcCCceeeeeee----cCcccHHHHHHHHHcC--CccceEE
Q 039636 67 TYSKFLDVVLPLIREGKIVYVEDIV----EGLENAPAALLGLFSG--RNVGKQA 114 (129)
Q Consensus 67 ~~~~~~~~~~~~~~~g~i~~~~~~~----~~l~~~~~a~~~~~~~--~~~Gkvv 114 (129)
.....+..+++++..|+-.++...- .+.+++..+++.+-+- ...|+||
T Consensus 21 ~~~~L~r~LLr~LA~G~PVt~~~LA~a~g~~~e~v~~~L~~~p~tEyD~~GrIV 74 (77)
T PF12324_consen 21 GFAWLLRPLLRLLAKGQPVTVEQLAAALGWPVEEVRAALAAMPDTEYDDQGRIV 74 (77)
T ss_dssp THHHHHHHHHHHHTTTS-B-HHHHHHHHT--HHHHHHHHHH-TTSEEETTSEEE
T ss_pred ccHHHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHhCCCceEcCCCCee
Confidence 3456788899999999865443321 4899999999887542 2345654
No 174
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=20.53 E-value=2.7e+02 Score=19.99 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=14.6
Q ss_pred HHHHHhcCCCEEEeCCCcccHHHHhc
Q 039636 16 ERLKNKFAFDDAFNYKEEQDLVTALK 41 (129)
Q Consensus 16 ~~~~~~lGad~vi~~~~~~~~~~~v~ 41 (129)
+.+. ++|.+.++.-++..++...+.
T Consensus 145 ~~a~-~lGle~LVEVh~~~El~~a~~ 169 (247)
T PRK13957 145 KHAS-SLGMDVLVEVHTEDEAKLALD 169 (247)
T ss_pred HHHH-HcCCceEEEECCHHHHHHHHh
Confidence 3444 788888876555244544444
No 175
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=20.33 E-value=2.4e+02 Score=18.03 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=22.5
Q ss_pred ChHHHHHHHHhcC-CCEEEeCCC--cccHHHHhccccEEEecC
Q 039636 11 SKEKIERLKNKFA-FDDAFNYKE--EQDLVTALKRGQNARCSA 50 (129)
Q Consensus 11 s~~k~~~~~~~lG-ad~vi~~~~--~~~~~~~v~~G~~v~~G~ 50 (129)
.++|.+.+. ++| +|.++-... .++|.+.+. -+++.+|.
T Consensus 55 ~~eR~~~l~-~lg~VD~vi~~~~~~~~~fi~~l~-~~~vv~G~ 95 (144)
T cd02172 55 EDLRAEVLA-ALGFVDYVVLFDNPTALEIIDALQ-PNIYVKGG 95 (144)
T ss_pred HHHHHHHHH-ccCCccEEEECCCCCHHHHHHHhC-CCEEEECC
Confidence 356777876 999 898865432 123443221 45666775
No 176
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=20.02 E-value=1.2e+02 Score=23.10 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=17.5
Q ss_pred EEEEEeCChHHHHHHHHhcCCCEEEeC
Q 039636 4 YVVGSAGSKEKIERLKNKFAFDDAFNY 30 (129)
Q Consensus 4 ~Vi~t~~s~~k~~~~~~~lGad~vi~~ 30 (129)
+|++.+.+++..+.++ .+|++.++++
T Consensus 325 ~ii~~~~~~~~~~~~~-~~g~~~vi~p 350 (453)
T PRK09496 325 KVIALVNRPAYVDLVE-GLGIDIAISP 350 (453)
T ss_pred eEEEEECCcchHHHHH-hcCCCEEECH
Confidence 5666666666666665 7777777754
Done!