BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039637
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V5V|A Chain A, W57e Flavodoxin From Anabaena
pdb|2V5V|B Chain B, W57e Flavodoxin From Anabaena
Length = 169
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 9 GC-FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
GC E +L D+E Y + D V N L AY TGD
Sbjct: 53 GCPTENIGELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|1FLV|A Chain A, Structure Of The Oxidized Long Chain Flavodoxin From
Anabaena 7120 At 2 Angstroms Resolution
pdb|1RCF|A Chain A, Structure Of The Trigonal Form Of Recombinant Oxidized
Flavodoxin From Anabaena 7120 At 1.40 Angstroms
Resolution
Length = 169
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|1OBV|A Chain A, Y94f Flavodoxin From Anabaena
Length = 169
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|1QHE|A Chain A, Energetics Of A Hydrogen Bond (Charged And Neutral) And
Of A Cation-Pi Interaction In Apoflavodoxin
pdb|1FTG|A Chain A, Structure Of Apoflavodoxin: Closure Of A
TyrosineTRYPTOPHAN AROMATIC Gate Leads To A Compact
Fold
Length = 168
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 60 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 90
>pdb|1OBO|A Chain A, W57l Flavodoxin From Anabaena
pdb|1OBO|B Chain B, W57l Flavodoxin From Anabaena
Length = 169
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|1DX9|A Chain A, W57a Apoflavodoxin From Anabaena
pdb|1DX9|B Chain B, W57a Apoflavodoxin From Anabaena
pdb|1DX9|C Chain C, W57a Apoflavodoxin From Anabaena
pdb|1DX9|D Chain D, W57a Apoflavodoxin From Anabaena
Length = 169
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|2KQU|A Chain A, F98n Apoflavodoxin From Anabaena Pcc 7119
Length = 169
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|2V5U|A Chain A, I92a Flavodoxin From Anabaena
pdb|2V5U|B Chain B, I92a Flavodoxin From Anabaena
Length = 169
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|3ESZ|A Chain A, K2ak3a Flavodoxin From Anabaena
pdb|3ESZ|B Chain B, K2ak3a Flavodoxin From Anabaena
Length = 169
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 ELQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|3ESX|A Chain A, E16ke61kd126kd150k Flavodoxin From Anabaena
pdb|3ESX|B Chain B, E16ke61kd126kd150k Flavodoxin From Anabaena
Length = 169
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 KLQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|3ESY|A Chain A, E16ke61k Flavodoxin From Anabaena
pdb|3ESY|B Chain B, E16ke61k Flavodoxin From Anabaena
pdb|3ESY|C Chain C, E16ke61k Flavodoxin From Anabaena
pdb|3ESY|D Chain D, E16ke61k Flavodoxin From Anabaena
Length = 169
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+L D+E Y + D V N L AY TGD
Sbjct: 61 KLQSDWEGLYSELDDVDFNGKLVAYFGTGDQ 91
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 37 LCAYC-----RTGDMESVMHVMRKLDELAISPDYNTFHILIK-------YFCKEKMYMLA 84
LC +C RTG + +V +V + L I PD++ F +++K E+ Y
Sbjct: 229 LCVHCSAGCGRTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQRPAAVQTEEQYRFL 288
Query: 85 YRTMVDM 91
Y T+ M
Sbjct: 289 YHTVAQM 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,480,449
Number of Sequences: 62578
Number of extensions: 158642
Number of successful extensions: 608
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 12
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)