BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039637
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910,
chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2
SV=1
Length = 664
Score = 246 bits (627), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 115/159 (72%), Positives = 138/159 (86%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MISA CRS F+E K+L+ D E Y+K D+V+LN+MLCAYCR G+MESVM +M+K+DE A
Sbjct: 383 MISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQA 442
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPDYNTFHILIKYF KEK+++LAY+T +DMH KGH+ EEELCSSLI+HLGK+RA +EA
Sbjct: 443 VSPDYNTFHILIKYFIKEKLHLLAYQTTLDMHSKGHRLEEELCSSLIYHLGKIRAQAEAF 502
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159
SVYNMLRYSKR++CK LHEKILHILI G LLKDAYIVVK
Sbjct: 503 SVYNMLRYSKRTICKELHEKILHILIQGNLLKDAYIVVK 541
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C+SG EE +L G+FEA D V +++ AYC++G+M+ +++++
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
+ P TF++L+ FC M + + M KG P +SL+
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ FC G E+ ++L AK + NS++ YC ++++ + + +
Sbjct: 567 LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG 626
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD T+ L+K CK + A+ +M KG S LI K + EA
Sbjct: 627 VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAR 686
Query: 121 SVYNMLR 127
V++ +R
Sbjct: 687 EVFDQMR 693
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS FC+ G E +L + K + D V ++ YC+ G M+ V + +
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
SP+ T+ LI CKE A + +M + G QP +S++ L K EA+
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 121 SV 122
+
Sbjct: 512 KL 513
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC+ G + + ++ DV+ +++ +C+ GDM + ++
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL---GKMRAHS 117
+ PD TF LI +CK A+R M + G P ++LI L G + + +
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476
Query: 118 EAL 120
E L
Sbjct: 477 ELL 479
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 46/98 (46%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ G + +L + + ++ NS++ C++G++E + ++ + +
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
++ D T+ L+ +CK A + +M KG QP
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQP 559
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
D V+ +++ +C+ GD+ + ++ I+PD T+ +I FC+ + A +
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 409
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124
+M KG +P+ + LI K +A V+N
Sbjct: 410 HEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHN 445
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY 65
C+ G +E L E K DV+ ++++ YCR G+++ V ++ + + P+
Sbjct: 257 CQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNS 316
Query: 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL---GKMRAHSE 118
+ +I C+ A +M R+G P+ + ++LI G +RA S+
Sbjct: 317 YIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 372
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 41/99 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ +CR G ++ +L + K K + + S++ CR + ++
Sbjct: 287 VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG 346
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
I PD + LI FCK A + +MH + P+
Sbjct: 347 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPD 385
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 35 SMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRK 94
+++ +C+ +M+ + +++ S +T+ +LIK F K K ++ A M R+
Sbjct: 636 NLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695
Query: 95 GHQPEEEL 102
G ++E+
Sbjct: 696 GLAADKEI 703
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRT 87
++V N ++ C+ G ++ H++ ++ +PD ++ ++ +C+ ++
Sbjct: 244 WNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKL 303
Query: 88 MVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN-MLR 127
+ M RKG +P + S+I L ++ +EA ++ M+R
Sbjct: 304 IEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR 344
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ CRSG EE + + + D+V NS++ CR G +E + + RKL
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664
Query: 61 ISPDYNTFHILIKYFCK 77
I PD TF+ L+ + CK
Sbjct: 665 IPPDTVTFNTLMSWLCK 681
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+AF R G +E ++L + + D + NS++ CR G+++ + K+
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+P + +ILI C+ M A +M +G P+ +SLI L + + L
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154
+++ L+ ++ L G + DA
Sbjct: 655 TMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDA 688
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 20/163 (12%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ FC+ G +E + + A K + V N ++ A+C+ + + + R++
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489
Query: 61 ISPDYNTFHILIKYFC-----KEKMYML-------------AYRTMVDMH-RKGHQPE-E 100
PD TF+ LI C K +++L Y T+++ R+G E
Sbjct: 490 CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEAR 549
Query: 101 ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143
+L + ++F + + + + R + ++L EK+L
Sbjct: 550 KLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLR 592
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I + + G ++ D K K +V ++ +C+ G ++ +V+ ++
Sbjct: 395 LIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADG 454
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110
+ P+ F+ LI FCKE A +M RKG +P+ +SLI L
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGL 504
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 5/149 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59
+I F G ++ K + D Y DV NS++ Y + G + + V+ +
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 60 AISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
P+ ++ IL+ FCK AY + +M G +P + LI K EA
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478
Query: 120 LSVYNMLRYSKRSMCKALHEKILHILISG 148
+ ++ R R CK + LISG
Sbjct: 479 VEIF---REMPRKGCKP-DVYTFNSLISG 503
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS C + L D ++ + V N+++ A+ R G+++ ++ ++
Sbjct: 500 LISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 559
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
D T++ LIK C+ A M R GH P C+ LI L + EA+
Sbjct: 560 SPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAV 619
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ G + L + E K K D++ N+++ +C G + ++R + +
Sbjct: 269 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
ISP+ TF +LI F KE A + + +M ++G P +SLI K EA+
Sbjct: 329 ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388
Query: 121 SVYNMLRYSKRSMCKALHEKIL--HILISG 148
+ +++ + K I+ +ILI+G
Sbjct: 389 QMVDLM------ISKGCDPDIMTFNILING 412
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/155 (18%), Positives = 70/155 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC+ EE Q+ +K D++ N ++ YC+ ++ + + R++
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ + T++ L++ FC+ +A + +M + +P+ L+ L +AL
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKAL 493
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155
++ + SK + ++ I+H + + + DA+
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAW 528
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +F + G E QL + + + + NS++ +C+ +E + ++ +
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 61 ISPDYNTFHILIKYFCK 77
PD TF+ILI +CK
Sbjct: 399 CDPDIMTFNILINGYCK 415
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 54/119 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ FC+SG E K+L + ++ + D+V +L C G++E + + K+++
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK 503
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
+ D + I+I C A+ + KG + + + +I L + + S+A
Sbjct: 504 MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKA 562
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Query: 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMV 89
V+ N + A +T E V+ + ++++ I+ T I+I FC+ + A+ TM
Sbjct: 88 VIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMG 147
Query: 90 DMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN-MLRYSKRSMCKALHEKILHILISG 148
+ + G++P+ + ++L+ L SEAL + + M+ + L+ + + ++G
Sbjct: 148 KIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNG 207
Query: 149 KLLKDAYIVV 158
K + DA +++
Sbjct: 208 K-VSDAVVLI 216
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ SA ++ +E L E+K + + L+ M+ +CR + M K+ +L
Sbjct: 94 LFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLG 153
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
PD F+ L+ C E A + M GH+P
Sbjct: 154 YEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP 191
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C +G + L + + V +L C++G M ++RK++E
Sbjct: 199 LVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN 258
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
I D + I+I CK+ A+ +M KG + +
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 297
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 55/99 (55%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I CR E +L K K D+V++N+++ +C G+M+ +++++D ++
Sbjct: 438 LIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMS 497
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
I+PD T++ L++ C E + A M +M R+G +P+
Sbjct: 498 INPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPD 536
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ C G FEE ++L G+ + + K D + N+++ Y + GD + V ++ L
Sbjct: 508 LMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLG 567
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115
+P T++ L+K K + LA + +M +G P + S+I + + A
Sbjct: 568 FNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDA 622
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI+ C+ G ++ K G E K +V N+++ + G +E ++ ++
Sbjct: 231 MINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKG 290
Query: 61 ISPDYNTFHILIKYFCKE 78
PD T++ ++ + C E
Sbjct: 291 FQPDMQTYNPILSWMCNE 308
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ F G E + + + ++K + D+ N +L C G V+R++ E+
Sbjct: 266 LVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEG---RASEVLREMKEIG 322
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
+ PD +++ILI+ +A+ +M ++G P
Sbjct: 323 LVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVP 360
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93
N+++ +E+ ++R++ E I D T++ILI +C+ A+ +M
Sbjct: 366 NTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMT 425
Query: 94 KGHQPEEELCSSLIFHLGKMRAHSEA 119
G QP + +SLI+ L + EA
Sbjct: 426 DGIQPTQFTYTSLIYVLCRKNKTREA 451
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI FC+ F++ K + D A D VV N+++ YCR ++ M ++R++
Sbjct: 407 MIYGFCKHNRFDDAKHMF-DLMASPD---VVTFNTIIDVYCRAKRVDEGMQLLREISRRG 462
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ + T++ LI FC+ A +M G P+ C+ L++ + EAL
Sbjct: 463 LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEAL 522
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155
++ +++ SK + + I+H + G + +A+
Sbjct: 523 ELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 557
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C G E L K DVV +++ C+ GD +S ++++ K++E
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
I PD + +I CK+ + A +M KG P
Sbjct: 292 IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 330
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C+ G + L E + K DVV+ ++++ C+ G ++ ++ E
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG 326
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
I+P+ T++ +I FC + A R + DM + P+ ++LI
Sbjct: 327 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALI 373
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 44/107 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ FC + EE +L + D V N ++ C+ ++ + L
Sbjct: 508 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 567
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
+ PD T++++I FC + A M GH+P+ ++LI
Sbjct: 568 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 614
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ G + + L + K +V N M+ +C G ++R + E
Sbjct: 302 IIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIERE 361
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I+PD TF+ LI KE A + +M + P+ +S+I+ K +A
Sbjct: 362 INPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAK 421
Query: 121 SVYNML 126
+++++
Sbjct: 422 HMFDLM 427
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRT 87
Y V N ++ + R + + + RK++ I + +F+ILIK FC + T
Sbjct: 104 YTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLST 163
Query: 88 MVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144
+ + G QP+ ++L+ L SEAL+++ + + AL ++++ I
Sbjct: 164 FGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEI 220
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C +G E+ + D + K DVV +++L +CR+ D++ + V R++ E
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
I PD T+ LI+ FC+++ A +M R G P+E ++LI
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALI 527
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ F + G E ++ + VV N+++ +C TG ME + V+ + E
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPD ++ ++ FC+ A R +M KG +P+ SSLI + R EA
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505
Query: 121 SVY-NMLR 127
+Y MLR
Sbjct: 506 DLYEEMLR 513
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +C+ ++ +L K + +++ N ++ CR G M+ V V+ +++
Sbjct: 246 LIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG 305
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
S D T++ LIK +CKE + A +M R G P +SLI + K + A+
Sbjct: 306 YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAM 365
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISG 148
+ +R R +C +E+ L+ G
Sbjct: 366 EFLDQMRV--RGLCP--NERTYTTLVDG 389
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 14/149 (9%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC +G + L E K +VV N+++ YC+ ++ ++R +
Sbjct: 211 LIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG 270
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI--------FHLGK 112
+ P+ +++++I C+E + +M+R+G+ +E ++LI FH
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA- 329
Query: 113 MRAHSEALS---VYNMLRYSK--RSMCKA 136
+ H+E L +++ Y+ SMCKA
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 48/107 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +C+ G F + + + V+ S++ + C+ G+M M + ++
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
+ P+ T+ L+ F ++ AYR + +M+ G P ++LI
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALI 422
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++S FCRS +E ++ + K K D + +S++ +C + + ++ +
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
+ PD T+ LI +C E A + +M KG P+ S LI L K EA
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREA 574
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 35 SMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRK 94
+++ AYC GD+E + + ++ E + PD T+ +LI K+ A R ++ + +
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584
Query: 95 GHQPEE-------ELCSSLIF 108
P + E CS++ F
Sbjct: 585 ESVPSDVTYHTLIENCSNIEF 605
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
+V N ++ +C G+++ + + K++ P+ T++ LI +CK + ++ +
Sbjct: 204 NVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLL 263
Query: 89 VDMHRKGHQPEEELCSSLIFHL---GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145
M KG +P + +I L G+M+ S L+ N YS L E + L
Sbjct: 264 RSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS-------LDEVTYNTL 316
Query: 146 ISG 148
I G
Sbjct: 317 IKG 319
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 35 SMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRK 94
+++ + + G M V+R++++ SP T++ LI C A + DM K
Sbjct: 385 TLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEK 444
Query: 95 GHQPE 99
G P+
Sbjct: 445 GLSPD 449
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM 46
+I FC G E Q+ K K D N M+ +CR GD+
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDI 656
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 30 VVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
V+ N++L A R+ ++ +V +++ E +SP+ T++ILI+ FC +A
Sbjct: 169 VLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLF 228
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMR 114
M KG P ++LI K+R
Sbjct: 229 DKMETKGCLPNVVTYNTLIDGYCKLR 254
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
M++A C+ G E+ + K D+V N+++ AY G ME +M +
Sbjct: 241 MVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG 300
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
SP T++ +I CK Y A +M R G P+ SL+ K E
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETE 360
Query: 121 SVYNMLR 127
V++ +R
Sbjct: 361 KVFSDMR 367
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
DV NS+L +CR M+ V+RK+ E ++PD +T+ +I F + A+R
Sbjct: 656 DVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIH 715
Query: 89 VDMHRKGHQPEEEL 102
+M ++G P+++
Sbjct: 716 DEMLQRGFSPDDKF 729
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY 65
C+ G ET+++ D ++ D+V +SM+ + R+G+++ + + E + PD
Sbjct: 351 CKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDN 410
Query: 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125
+ ILI+ +C++ M +A +M ++G + ++++ L K + EA ++N
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE 470
Query: 126 LRYSKRSMCKALHEKILHILISG 148
+ ++R++ + L ILI G
Sbjct: 471 M--TERALFPDSY--TLTILIDG 489
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ G + +L + K + DVV N++L + + GD+++ + +
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
I P ++ IL+ C + A+R +M K +P +C+S+I
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMI 592
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I + R G E + + +V LN M+ A C+ G ME V + ++ E
Sbjct: 206 LIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKG 265
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD T++ LI + + + A+ M M KG P +++I L K + A
Sbjct: 266 VYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAK 325
Query: 121 SVY-NMLR 127
V+ MLR
Sbjct: 326 EVFAEMLR 333
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++A C G E ++ + +K K V++ NSM+ YCR+G+ + K+
Sbjct: 556 LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615
Query: 61 ISPDYNTFHILIKYFCKEK 79
PD +++ LI F +E+
Sbjct: 616 FVPDCISYNTLIYGFVREE 634
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ISA+ G EE +L K V N+++ C+ G E V ++
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPD T+ L+ CK+ + + DM + P+ SS++ + +AL
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395
Query: 121 SVYNMLR 127
+N ++
Sbjct: 396 MYFNSVK 402
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE-- 58
MI +CRSG + + ++ D + N+++ + R +M +++K++E
Sbjct: 591 MIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQ 650
Query: 59 LAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118
+ PD T++ ++ FC++ A + M +G P+ + +I +E
Sbjct: 651 GGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTE 710
Query: 119 ALSVYN 124
A +++
Sbjct: 711 AFRIHD 716
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +CR G L + + DVV N++L C+ + + ++ E A
Sbjct: 416 LIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERA 475
Query: 61 ISPDYNTFHILIKYFCK 77
+ PD T ILI CK
Sbjct: 476 LFPDSYTLTILIDGHCK 492
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 47/107 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
M+S F RSG ++ + D V+ ++ YCR G + M++ ++ +
Sbjct: 381 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
+ D T++ ++ CK KM A + +M + P+ + LI
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILI 487
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 51/124 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ C+ E +L + + D L ++ +C+ G++++ M + +K+ E
Sbjct: 451 ILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKR 510
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I D T++ L+ F K A DM K P S L+ L +EA
Sbjct: 511 IRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAF 570
Query: 121 SVYN 124
V++
Sbjct: 571 RVWD 574
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I + C+ G F++ L + E K K DVV +S++ C G + ++R++
Sbjct: 251 VIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRN 310
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I PD TF LI F KE + A +M +G P+ +SLI K EA
Sbjct: 311 IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEAN 370
Query: 121 SVYNML 126
+++++
Sbjct: 371 QMFDLM 376
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 72/155 (46%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC+ C E Q+ +K + D+V + ++ +YC+ ++ M + R++
Sbjct: 356 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ T++ L+ FC+ A +M +G P L+ L ++AL
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 475
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155
++ ++ S+ ++ ++ I+H + + + DA+
Sbjct: 476 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I F + G E K+L + + D + NS++ +C+ E+ +H ++ +L
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK----ENCLHEANQMFDLM 376
Query: 61 IS----PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL---GKM 113
+S PD T+ ILI +CK K R ++ KG P ++L+ GK+
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 436
Query: 114 RAHSE 118
A E
Sbjct: 437 NAAKE 441
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C G +++ ++ + + DVV ++++ + + G + + ++
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
I+PD T++ LI FCKE A + M KG +P+
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 384
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 51/119 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ FC+SG K+L + ++ VV +L C G++ + + K+ +
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 485
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
++ ++I+I C A+ + KG +P+ + +I L K + SEA
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 544
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 52/124 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ FC G E L + D+V +++++ C G + + ++ ++ E
Sbjct: 146 LVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG 205
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ ++ CK LA M + + S +I L K + +AL
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 265
Query: 121 SVYN 124
S++N
Sbjct: 266 SLFN 269
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C + ++ L K K DVV N M+ C+ G + + RK+ E
Sbjct: 496 IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555
Query: 61 ISPDYNTFHILIK 73
+PD T++ILI+
Sbjct: 556 CTPDDFTYNILIR 568
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
Query: 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS 62
SA R+ ++ E ++D+ + M+ YCR + V+ + +L
Sbjct: 78 SAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYE 137
Query: 63 PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122
PD TF L+ FC E A + M +P+ S+LI L SEAL +
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197
Query: 123 YN-MLRYS 129
+ M+ Y
Sbjct: 198 IDRMVEYG 205
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59
+I+ C G E L D +Y + D V +L C++G+ + + RK++E
Sbjct: 181 LINGLCLKGRVSEALVLI-DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER 239
Query: 60 AISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110
I + I+I CK+ + A +M KG + + SSLI L
Sbjct: 240 NIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 41/95 (43%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
D + ++++ +C G + + ++ ++ E+ PD T LI C + A +
Sbjct: 139 DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLI 198
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVY 123
M G QP+E ++ L K + AL ++
Sbjct: 199 DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMH 92
N + A RT + V+ + ++ I D T I+I +C++K + A+ +
Sbjct: 73 FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAW 132
Query: 93 RKGHQPEEELCSSLI 107
+ G++P+ S+L+
Sbjct: 133 KLGYEPDTITFSTLV 147
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS+ C G +E ++LA FE Y N+++ C+ D + +MR++ E
Sbjct: 222 VISSMCEVGLVKEGRELAERFEPVVSVY-----NALINGLCKEHDYKGAFELMREMVEKG 276
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
ISP+ ++ LI C LA+ + M ++G P SSL+ +AL
Sbjct: 277 ISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDAL 336
Query: 121 SVYNML 126
++N +
Sbjct: 337 DLWNQM 342
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK 77
+VV N+++ +C G++ + V ++E+ SP+ T+ LI F K
Sbjct: 351 NVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAK 399
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKY--DVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58
+I A+C+ G E Q+ K+ DV+ +++ CR+ E + ++ ++
Sbjct: 569 IILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMIS 628
Query: 59 LAISPDYNTFHILIKYF 75
I P T+ +LI F
Sbjct: 629 AGIVPSIATWSVLINCF 645
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 52 VMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE--------EELC 103
V R + P+ T+++L+K CK A + +V+M KG P+ +C
Sbjct: 168 VYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMC 227
Query: 104 SSLIFHLGKMRAH--SEALSVYNML 126
+ G+ A +SVYN L
Sbjct: 228 EVGLVKEGRELAERFEPVVSVYNAL 252
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI C+ + + + + E K ++ + NSML Y D + + V +++ E
Sbjct: 898 MIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETG 957
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD T++ LI +C+++ Y M M G P+ + SLI GK + +A
Sbjct: 958 LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAE 1017
Query: 121 SVY----------------NMLRYSKRSMCKALHEKILHIL 145
++ M++ S+ S + EK+L ++
Sbjct: 1018 QLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMM 1058
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MIS + R G E ++L + E K D V NS+L A+ R + E V V +++ ++
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMG 397
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR-KGHQPEEELCSSLIFHLGKMRAHSEA 119
D T++ +I + K+ LA + DM G P+ + LI LGK EA
Sbjct: 398 FGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEA 457
Query: 120 LSV 122
++
Sbjct: 458 AAL 460
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 47/101 (46%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYR 86
+ D + N++L A R +++ + V ++ PD T++ +I + + + A R
Sbjct: 294 RPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAER 353
Query: 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127
+++ KG P+ +SL++ + R + VY ++
Sbjct: 354 LFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQ 394
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 71/161 (44%), Gaps = 6/161 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I A+ + +++ + + G+ D+ NS++ AY + G E + +
Sbjct: 758 IIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDG 817
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKM-RAHS-- 117
SP + +IL+ C + Y + ++ G + + SS++ L RA +
Sbjct: 818 PSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISK---SSILLMLDAFARAGNIF 874
Query: 118 EALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158
E +Y+ ++ + L+ ++ +L GK ++DA I+V
Sbjct: 875 EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMV 915
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 51/123 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++SA R + ++ D EA + D+ N+M+ Y R G + +L+
Sbjct: 303 LLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T++ L+ F +E+ M + G +E +++I GK AL
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422
Query: 121 SVY 123
+Y
Sbjct: 423 QLY 425
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ISAF + C E+ +QL + +K K D ++M+ +G +++ +
Sbjct: 1003 LISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAG 1062
Query: 61 ISPDYNTFHILI 72
I P T H+L+
Sbjct: 1063 IEPTLATMHLLM 1074
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ A C+ G ++ +L D ++ ++ S+L +CR G M +V+ +++E
Sbjct: 224 LLDALCKHGSVKDAAKLFEDMRMRF-PVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAG 282
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD + L+ + AY + DM R+G +P + LI L K+ EA+
Sbjct: 283 FEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAM 342
Query: 121 SVY-NMLRY 128
V+ M RY
Sbjct: 343 KVFVEMERY 351
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++S + +G + L D + + + ++ A C+ ME M V +++
Sbjct: 293 LLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYE 352
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEE 100
D T+ L+ FCK Y + DM +KG P E
Sbjct: 353 CEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSE 392
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 42/98 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++S FC+ G ++ + D K + ++ A+ + E + +M K+ ++
Sbjct: 363 LVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIE 422
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
PD ++++I+ CK A R +M G P
Sbjct: 423 YHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSP 460
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILI 72
D+ + N ++ C+ G+++ + + +++E +SP +TF I+I
Sbjct: 426 DIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMI 469
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 52/100 (52%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ FC++G + + + + D + +++ +CR GD+E+ + + +++D+
Sbjct: 386 LVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNG 445
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEE 100
I D F L+ CKE + A R + +M R G +P++
Sbjct: 446 IELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDD 485
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FCR G E ++ + + + D V ++++C C+ G + +R++
Sbjct: 421 LIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAG 480
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
I PD T+ +++ FCK+ ++ + +M GH P
Sbjct: 481 IKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVP 518
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ FC+ G + +++ + + + VV N+++ YC+ G+++ + ++++
Sbjct: 246 LMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSR 305
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ LI CKE A+ +M ++G P + + ++LI HS
Sbjct: 306 TRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLI------HGHSRNG 359
Query: 121 SVYNMLRYSKRSMCKALHEKIL--HILISG 148
+ M ++ + K L I+ + L++G
Sbjct: 360 EIDLMKESYQKMLSKGLQPDIVLYNTLVNG 389
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I R+G + K+ +K + D+VL N+++ +C+ GD+ + +++ +
Sbjct: 351 LIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
+ PD T+ LI FC+ A +M + G + + S+L+
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALV 457
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVD 90
V+ +++ + R G+++ + +K+ + PD ++ L+ FCK ++A R +VD
Sbjct: 346 VIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNG-DLVAARNIVD 404
Query: 91 -MHRKGHQPEEELCSSLI 107
M R+G +P++ ++LI
Sbjct: 405 GMIRRGLRPDKITYTTLI 422
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
+V + N ++ +C+ G++ V ++ + ++ P +F+ LI +CK +R
Sbjct: 239 NVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLK 298
Query: 89 VDMHRKGHQPEEELCSSLIFHLGK 112
M + +P+ S+LI L K
Sbjct: 299 HQMEKSRTRPDVFTYSALINALCK 322
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
M+ AFC+ G + +L + ++ VV N +L C+ G M++ ++ + +
Sbjct: 491 MMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIG 550
Query: 61 ISPDYNTFHILIK 73
+ PD T++ L++
Sbjct: 551 VVPDDITYNTLLE 563
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI F + G ++T + + + DV+ N+++ +C+ G + + R++
Sbjct: 303 MIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNG 362
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ ++ L+ FCKE M A + VDM R G P E +SLI K+ S+A
Sbjct: 363 LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAF 422
Query: 121 SVYN 124
+ N
Sbjct: 423 RLGN 426
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 54/127 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI C+ G E + L + + + D V NSM+ + + G ++ + ++ ++
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T++ LI FCK + +M G +P S+L+ K +A+
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 121 SVYNMLR 127
Y +R
Sbjct: 388 KFYVDMR 394
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/149 (19%), Positives = 63/149 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ FC+ G + + + K +VV ++++ A+C+ G M+ + + +
Sbjct: 338 LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 397
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ T+ LI CK A+R +M + G + ++LI L EA
Sbjct: 398 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAE 457
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGK 149
++ + + A + ++H + K
Sbjct: 458 ELFGKMDTAGVIPNLASYNALIHGFVKAK 486
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80
K + ++ +++ AY ++G+ +H++ ++ EL I TF +LI CK K+
Sbjct: 539 KANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKL 592
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93
N +L + + G + V + + P T++I+I CKE A +M
Sbjct: 231 NGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKF 290
Query: 94 KGHQPEEELCSSLIFHLGKM 113
+G P+ +S+I GK+
Sbjct: 291 RGLVPDTVTYNSMIDGFGKV 310
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++A C+ G E+ +++ G AK + V+ N+M+ YCR GD+ + +++
Sbjct: 360 LLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQG 419
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112
+ PD+ ++ LI+ FC+ A + + M KG P E + LI G+
Sbjct: 420 MKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGR 471
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 49/123 (39%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ + +QL + A+ ++ N+++ YC+ G+ E V ++
Sbjct: 220 LIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADH 279
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I P TF+ L+K K M A + +M G P+ S L AL
Sbjct: 280 IEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAAL 339
Query: 121 SVY 123
VY
Sbjct: 340 GVY 342
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +G E + L + K K DV NS++ Y G+++ + + ++
Sbjct: 570 LIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSG 629
Query: 61 ISPDYNTFHILIKYFCKEKM 80
I P T+H+LI KE +
Sbjct: 630 IKPTLKTYHLLISLCTKEGI 649
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 45/107 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G E ++ + K V N ++ Y R + + +++++++
Sbjct: 430 LIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNG 489
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
P+ ++ LI CK + A DM +G P+ + + LI
Sbjct: 490 TMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLI 536
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 35/193 (18%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHV-------- 52
+ISA+ R G +E +L K K DV ++L + R G +ES M +
Sbjct: 355 LISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG 414
Query: 53 ------------------------MRKLDEL---AISPDYNTFHILIKYFCKEKMYMLAY 85
M+ DE+ +SPD T++ L+ F + M
Sbjct: 415 CKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVS 474
Query: 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145
+M R G PE E ++LI + + +A++VY + + + + + +L L
Sbjct: 475 GVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAAL 534
Query: 146 ISGKLLKDAYIVV 158
G + + + V+
Sbjct: 535 ARGGMWEQSEKVL 547
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 54/113 (47%)
Query: 7 RSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN 66
RS F +++++ + AK K D++ N+++ AYCR M + ++ I PD
Sbjct: 676 RSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVI 735
Query: 67 TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
T++ I + + M+ A + M + G +P + +S++ K+ EA
Sbjct: 736 TYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEA 788
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT 67
SG F+E K+ AG F + + + N+++ AY R G E M V R++ + ++PD +T
Sbjct: 474 SGVFKEMKR-AG-FVPERETF-----NTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLST 526
Query: 68 FHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEE 100
++ ++ + M+ + + + +M +P E
Sbjct: 527 YNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 6 CRSGCF-EETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD 64
C+ G +E Q+ + +A YD V N++L Y ++ + M V+ ++ SP
Sbjct: 289 CKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPS 348
Query: 65 YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124
T++ LI + ++ M A M KG +P+ ++L+ + A+S++
Sbjct: 349 IVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFE 408
Query: 125 MLRYS--KRSMC 134
+R + K ++C
Sbjct: 409 EMRNAGCKPNIC 420
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 41/95 (43%)
Query: 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMV 89
+V NS++ AY R G ++ M + ++ E PD T+ L+ F + A
Sbjct: 349 IVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFE 408
Query: 90 DMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124
+M G +P ++ I G +E + +++
Sbjct: 409 EMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93
NS++ + R+ D ++R++ I PD +++ +I +C+ A R +M
Sbjct: 668 NSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRN 727
Query: 94 KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148
G P+ ++ I EA+ V +RY + C+ ++ + ++ G
Sbjct: 728 SGIVPDVITYNTFIGSYAADSMFEEAIGV---VRYMIKHGCRP-NQNTYNSIVDG 778
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I A+CR+ + ++ + DV+ N+ + +Y E + V+R + +
Sbjct: 705 VIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHG 764
Query: 61 ISPDYNTFHILIKYFCK 77
P+ NT++ ++ +CK
Sbjct: 765 CRPNQNTYNSIVDGYCK 781
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I F RSG F+E +++ K K DVV N+M+ +CR+G ++ + M +++E
Sbjct: 491 LIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEH 550
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
+ PD T+ +I + K++ A + M + +P +SLI
Sbjct: 551 LVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLI 597
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDK---YDVVLLNSMLCAYCRTGDMESVMHVMRKLD 57
++ C G E ++L E ++ K ++V N+++ YC+ GD+E+ V ++L
Sbjct: 211 LVKGMCNEGKVEVGRKL---IEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELK 267
Query: 58 ELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG 95
P TF +I FCKE ++ + R + ++ +G
Sbjct: 268 LKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERG 305
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI FCRSG +E ++ D ++++ Y + DM + + + R +++
Sbjct: 526 MIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNK 585
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112
P+ T+ LI FC + + +A T +M + P ++LI L K
Sbjct: 586 CKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAK 637
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG----DMESVMHVMRKL 56
MI+ FC+ G F + +L + + + + V LN+++ A R G ES+ ++
Sbjct: 281 MINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIAN- 339
Query: 57 DELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
PD T++ILI CKE +A + + +KG P + LI
Sbjct: 340 ---DCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLI 387
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++S C++G F K L + + D + +++ + R+GD + V E
Sbjct: 456 LMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKG 515
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ D + +IK FC+ M A M M+ + P++ S++I K + + A+
Sbjct: 516 VKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAI 575
Query: 121 SVYNMLRYSKRSMCKA 136
++ RY +++ CK
Sbjct: 576 KIF---RYMEKNKCKP 588
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 59/125 (47%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I A+C+S ++ +L + K D+V ++ +G M+ +++ KL +
Sbjct: 386 LIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRG 445
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPD +++L+ CK ++ A +M + P+ + ++LI + EA
Sbjct: 446 VSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEAR 505
Query: 121 SVYNM 125
V+++
Sbjct: 506 KVFSL 510
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++S FCR G ++ + E + K V ++ + R+ +ME + + ++EL
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108
+ PD +T+ +LI FC + A R M K +P E + +++I
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMIL 486
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G E +L K + + V+ N+M+ YC+ G + ++++++E
Sbjct: 449 LIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKE 508
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCS 104
++P+ ++ +I+ CKE+ A R + M G P + S
Sbjct: 509 LAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILS 552
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G + L D +++ +V N ++ +CR GD ++++++E
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
I P T+ ILI F + A + + M G P+ S LI
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI 450
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 46/98 (46%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I CR E ++ ++ +++ N+++ +C G + + + R L
Sbjct: 309 LIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRG 368
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
+SP T++IL+ FC++ A + + +M +G +P
Sbjct: 369 LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKP 406
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 43/98 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C+ G ++ Q+ + + ++V N+++ CR + V+ ++
Sbjct: 274 VMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG 333
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
I+P+ T++ LI FC A D+ +G P
Sbjct: 334 INPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSP 371
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 39/99 (39%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
DV ++ C G++E ++ +L E SP+ + LI CK+ A
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127
+M + G E + LI L K + +Y ++
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQ 260
>sp|Q3EDA9|PPR46_ARATH Putative pentatricopeptide repeat-containing protein At1g16830
OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2
Length = 608
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY 65
CR+GC E Q+ G V + + ++ + R+G+ + + + K+ ++ SP+
Sbjct: 223 CRTGCVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNL 282
Query: 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125
T+ LIK F M A+ + + +G P+ LC+ +I ++ EA V+
Sbjct: 283 VTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTS 342
Query: 126 LRYSKRSMCKALHEKILHIL-ISGKL 150
L K + IL L +SGK
Sbjct: 343 LEKRKLVPDQYTFASILSSLCLSGKF 368
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I F G +E + +++ D+VL N M+ Y R G E V L++
Sbjct: 288 LIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRK 347
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYR 86
+ PD TF ++ C + L R
Sbjct: 348 LVPDQYTFASILSSLCLSGKFDLVPR 373
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI 61
I C+ G + ++ G + K DV+ N+++ C+ + + K+ +
Sbjct: 258 IQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGL 317
Query: 62 SPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALS 121
PD T++ LI +CK M LA R + D G P++ SLI L + AL+
Sbjct: 318 EPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALA 377
Query: 122 VYN 124
++N
Sbjct: 378 LFN 380
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
DV NS+L C+T E VM + + E +P+ TF+IL++ C+ + A +
Sbjct: 495 DVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLL 554
Query: 89 VDMHRKGHQPEEELCSSLI 107
+M K P+ +LI
Sbjct: 555 EEMKNKSVNPDAVTFGTLI 573
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C+ GC + L +K D+ N ++ Y ME+ + ++ + +
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNG 491
Query: 61 ISPDYNTFHILIKYFCKEKMY---MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117
+ PD T++ L+ CK + M Y+TMV+ KG P + L+ L + R
Sbjct: 492 VDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVE---KGCAPNLFTFNILLESLCRYRKLD 548
Query: 118 EALSV 122
EAL +
Sbjct: 549 EALGL 553
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKY--DVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58
+I+ +C+ G + +++ GD A ++ + D S++ C G+ + + +
Sbjct: 327 LIAGYCKGGMVQLAERIVGD--AVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALG 384
Query: 59 LAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118
I P+ ++ LIK + M + A + +M KG PE + + L+ L KM S+
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSD 444
Query: 119 A 119
A
Sbjct: 445 A 445
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 36/134 (26%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL- 59
++ + CR +E L + + K D V +++ +C+ GD++ + RK++E
Sbjct: 537 LLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAY 596
Query: 60 -----------------------------------AISPDYNTFHILIKYFCKEKMYMLA 84
+ PD T+ +++ FCK L
Sbjct: 597 KVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLG 656
Query: 85 YRTMVDMHRKGHQP 98
Y+ +++M G P
Sbjct: 657 YKFLLEMMENGFIP 670
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 50/112 (44%)
Query: 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93
N+++ +G + V ++ + I+PD +F I +K FCK A R + +M
Sbjct: 115 NAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSS 174
Query: 94 KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145
+G + +++ + +E ++ + S S+C + K+L +L
Sbjct: 175 QGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVL 226
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 4/148 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C++ F+E + G + + D N+++ YC+ G ++ ++
Sbjct: 292 LIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNG 351
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ LI C E A + KG +P L ++LI L EA
Sbjct: 352 FVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAA 411
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISG 148
+ N + S++ + + + +IL++G
Sbjct: 412 QLANEM--SEKGLIPEV--QTFNILVNG 435
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C++ FE+ + K ++ N +L + CR ++ + ++ ++ +
Sbjct: 502 LLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKS 561
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
++PD TF LI FCK AY M ++I H A +E L
Sbjct: 562 VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIH-----AFTEKL 616
Query: 121 SV 122
+V
Sbjct: 617 NV 618
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C G L + K K +V+L N+++ G + + ++ E
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKG 421
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
+ P+ TF+IL+ CK A + M KG+ P+
Sbjct: 422 LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPD 460
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 48/107 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ C+ G +E ++L + ++ N + C+ G+++ + ++ L E
Sbjct: 222 LLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQG 281
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
PD T++ LI CK + A + M +G +P+ ++LI
Sbjct: 282 PKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLI 328
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 47/123 (38%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I G E QLA + K +V N ++ C+ G + +++ +
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD TF+ILI + + A + M G P+ +SL+ L K + +
Sbjct: 457 YFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVM 516
Query: 121 SVY 123
Y
Sbjct: 517 ETY 519
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ FC S ++ +AG E K DVV+ ++ C+ + + V++++ +
Sbjct: 164 LVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRG 223
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
ISP+ T+ LI CK A R + +M K P S+LI K S+
Sbjct: 224 ISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVD 283
Query: 121 SVYNML 126
SVY M+
Sbjct: 284 SVYKMM 289
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 1 MISAFCRSGCFEETKQLA--GDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58
+++ FCR CF+ + L+ G + D+V +S++ +C + ++ ++V ++++
Sbjct: 129 LVNCFCR--CFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEK 186
Query: 59 LAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112
+ I D ILI CK ++ + A + M +G P SSLI L K
Sbjct: 187 MGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCK 240
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C+SG + ++ + ++K +V+ ++++ AY + G + V V + + +++
Sbjct: 234 LITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMS 293
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSL 106
I P+ T+ LI C A + + M KG P S+L
Sbjct: 294 IDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTL 339
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 25 YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE---LAISPDYNTFHILIKYFCKEKMY 81
Y +V N +L A + + V+++ ++++ + ISPD T +IL+ FC+
Sbjct: 80 YPLPSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQP 139
Query: 82 MLAYRTMVDMHRKGHQPEEELCSSLI 107
A + M + G +P+ SSL+
Sbjct: 140 SSALSYLGKMMKLGIEPDIVTASSLV 165
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG---DMESVMHVMRKLD 57
++ AF +SG ++ L D + DV N ++ AY + G +ME+V+ MR +
Sbjct: 214 LLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNE 273
Query: 58 ELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117
PD TF++LI + K++ + +T + R +P +S+I + GK R
Sbjct: 274 ---CKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMID 330
Query: 118 EALSVY 123
+A V+
Sbjct: 331 KAEWVF 336
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
+VV N +L A+ ++G ++ V + + LD +SPD TF+ ++ + K M +
Sbjct: 207 NVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVL 266
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130
M +P+ + LI GK + + + L SK
Sbjct: 267 TRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSK 308
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 27/70 (38%)
Query: 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMH 92
LN+ML YCR G + + PD +T+ L K + K M M M
Sbjct: 386 LNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKME 445
Query: 93 RKGHQPEEEL 102
+ G P +
Sbjct: 446 KDGIVPNKRF 455
>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580,
mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2
SV=1
Length = 405
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C SG E QL +F + + +V+ + ++ +C G E ++ ++++
Sbjct: 208 LIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKER 267
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
I PD TF+ILI K+ + M KG +P +++ L + + EA
Sbjct: 268 IEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEA 326
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 57/121 (47%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
D LN ++ C +G++E+ + ++ + + P+ TF LI+ FC + + A++ +
Sbjct: 201 DACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLL 260
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148
M ++ +P+ + LI L K E + + ++ ++++L+ L+
Sbjct: 261 ERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDK 320
Query: 149 K 149
K
Sbjct: 321 K 321
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 42/98 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G FEE +L E + + D + N ++ + G +E + ++ ++
Sbjct: 243 LIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKG 302
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
P+ T+ ++ +K + A M M G +P
Sbjct: 303 CEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMISWGMRP 340
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59
+++A+CRSG ++ A + E+ + +VV NS++ Y GD+E + V+R + E
Sbjct: 231 VVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSER 290
Query: 60 AISPDYNTFHILIKYFCKEKM 80
+S + T+ LIK +CK+ +
Sbjct: 291 GVSRNVVTYTSLIKGYCKKGL 311
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/126 (17%), Positives = 62/126 (49%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ +CR+G + ++ + + + + NS++ YC++G + + ++++ +
Sbjct: 337 LMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWS 396
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD++T++ L+ +C+ A + M +K P + L+ ++ A + L
Sbjct: 397 LKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVL 456
Query: 121 SVYNML 126
S++ M+
Sbjct: 457 SLWKMM 462
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
+VV S++ YC+ G ME HV L E + D + + +L+ +C+ A R
Sbjct: 295 NVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVH 354
Query: 89 VDMHRKGHQPEEELCSSLI 107
+M G + +C+SLI
Sbjct: 355 DNMIEIGVRTNTTICNSLI 373
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 47/107 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +C+ G EE + + + K D + ++ YCRTG + + V + E+
Sbjct: 302 LIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIG 361
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
+ + + LI +CK + A + M+ +P+ ++L+
Sbjct: 362 VRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLV 408
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 2 ISAFCRSGCFEETKQLAGDFEAK----YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLD 57
I+ C++G E+ ++L D + D+Y +L CA GD+ + ++
Sbjct: 726 IAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHG-CAIA--GDINKAFTLRDEMA 782
Query: 58 ELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117
I P+ T++ LIK CK A R + + +KG P ++LI L K +
Sbjct: 783 LKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVA 842
Query: 118 EAL 120
EA+
Sbjct: 843 EAM 845
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
++V N+++ C+ G+++ ++ KL + I+P+ T++ LI K A R
Sbjct: 789 NIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLK 848
Query: 89 VDMHRKG 95
M KG
Sbjct: 849 EKMIEKG 855
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%)
Query: 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93
N+++ + + V ++ +L ++P T+ LI +C M AY T +M
Sbjct: 580 NTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIE 639
Query: 94 KGHQPEEELCSSLIFHLGKMRAHSEA 119
KG +CS + L ++ EA
Sbjct: 640 KGITLNVNICSKIANSLFRLDKIDEA 665
>sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400
OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1
Length = 610
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ + FC F E E + + D+V N+++ +YCR G ++ ++ + +
Sbjct: 242 LTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRR 301
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK--MRAHSE 118
+ PD T+ LIK CK+ A++T M +G +P+ ++LI+ K M S+
Sbjct: 302 VVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSK 361
Query: 119 ALSVYNMLRYS---KRSMCKALHEKILHILISGKLLKDAYIVVK 159
L ++ ML S R CK + E + G+LL VV+
Sbjct: 362 KL-LHEMLGNSVVPDRFTCKVIVEGFVR---EGRLLSAVNFVVE 401
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 20/166 (12%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ G E Q + K D + N+++ AYC+ G M+ ++ ++ +
Sbjct: 312 LIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNS 371
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL---GKMRA-- 115
+ PD T ++++ F +E + A +V++ R E+C LI L GK A
Sbjct: 372 VVPDRFTCKVIVEGFVREGRLLSAVNFVVELRRLKVDIPFEVCDFLIVSLCQEGKPFAAK 431
Query: 116 -----------HSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150
H YN L S S C A+ E +++ GKL
Sbjct: 432 HLLDRIIEEEGHEAKPETYNNLIES-LSRCDAIEEA---LVLKGKL 473
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I A+C+ G +++K+L + D ++ + R G + S ++ + +L L
Sbjct: 347 LIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVNFVVELRRLK 406
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVD--MHRKGHQPEEELCSSLIFHLGKMRAHSE 118
+ + LI C+E A + ++D + +GH+ + E ++LI L + A E
Sbjct: 407 VDIPFEVCDFLIVSLCQEGK-PFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCDAIEE 465
Query: 119 ALSVYNMLR 127
AL + L+
Sbjct: 466 ALVLKGKLK 474
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 18/140 (12%)
Query: 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMH 92
N + +C + V + K++E PD T++ L+ +C+ A+ M+
Sbjct: 239 FNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMY 298
Query: 93 RKGHQPEEELCSSLIFHL---GKMRAHSEALS------------VYNMLRYS--KRSMCK 135
R+ P+ +SLI L G++R + YN L Y+ K M +
Sbjct: 299 RRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQ 358
Query: 136 ALHEKILHILISGKLLKDAY 155
+K+LH ++ ++ D +
Sbjct: 359 Q-SKKLLHEMLGNSVVPDRF 377
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 46 MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSS 105
ME V + + I P+ TF+IL FC + + + M +G +P+ ++
Sbjct: 217 MEDCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNT 276
Query: 106 LIFHLGKMRAHSEALSVYNMLRYSKR 131
L+ + EA +Y ++ Y +R
Sbjct: 277 LVSSYCRRGRLKEAFYLYKIM-YRRR 301
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+S E+ QL + K D NS+L +CR GD++ +++ +
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ LI CK +A + + + KG + +I L + R +EA+
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAI 630
Query: 121 SVYNMLRYSKRSMCKALHEKIL 142
+++ + + A+ +I+
Sbjct: 631 NLFREMLEQNEAPPDAVSYRIV 652
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS C+ G +E ++ + + V N+++ C+ +E + R L
Sbjct: 336 VISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I PD TF+ LI+ C + + +A +M KG +P+E + LI L EAL
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEAL 455
Query: 121 SVYNMLRYSKRSMC 134
NML+ + S C
Sbjct: 456 ---NMLKQMELSGC 466
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 1 MISAFCRSGCFEETKQLAGD-FEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59
+++ C++G + ++ + YD DV NS++ C+ G+++ + V+ ++
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDP-DVYTYNSVISGLCKLGEVKEAVEVLDQMITR 359
Query: 60 AISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
SP+ T++ LI CKE A + KG P+ +SLI L R H A
Sbjct: 360 DCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVA 419
Query: 120 LSVYNMLR 127
+ ++ +R
Sbjct: 420 MELFEEMR 427
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKL-DELAISPDYNTFHILIKYFCKEKMYMLAYR 86
+ V +N ++ +C+ G +E ++ ++++ ++ PD TF+ L+ CK A
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316
Query: 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
M M ++G+ P+ +S+I L K+ EA+ V + +
Sbjct: 317 IMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 48/110 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I + C G +E + E V+ N+++ +C+ + +++
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG 500
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110
+S + T++ LI CK + A + M M +G +P++ +SL+ H
Sbjct: 501 VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHF 550
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS C+ EE +LA +K DV NS++ C T + M + ++
Sbjct: 371 LISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG 430
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+++LI C + A + M G ++LI K EA
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAE 490
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154
+++ + S + ++ L + ++DA
Sbjct: 491 EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDA 524
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC++ E +++ + E + V N+++ C++ +E +M ++
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL---GKMRAHS 117
PD T++ L+ +FC+ A + M G +P+ +LI L G++ S
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595
Query: 118 EALSVYNM 125
+ L M
Sbjct: 596 KLLRSIQM 603
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYR 86
K D N ML ++ V K+ I PD +TF++LIK C+ A
Sbjct: 151 KPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAIL 210
Query: 87 TMVDMHRKGHQPEEELCSSLI 107
+ DM G P+E+ ++++
Sbjct: 211 MLEDMPSYGLVPDEKTFTTVM 231
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/109 (14%), Positives = 48/109 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ FCR G ++ + + + D+V +++ C+ G +E ++R +
Sbjct: 546 LLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109
I+ + ++ +I+ +++ A +M + P + + ++F
Sbjct: 606 INLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFR 654
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKY--DVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58
++ FC+ G E+ + + D + D N+++ C+ G ++ + +M + +
Sbjct: 265 IVHGFCKEGRVEDALNFIQEM-SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQ 323
Query: 59 LAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118
PD T++ +I CK A + M + P ++LI L K E
Sbjct: 324 EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEE 383
Query: 119 ALSVYNML 126
A + +L
Sbjct: 384 ATELARVL 391
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I A CR+ + D + D +++ Y GD++ + + ++ E
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDM-HRKGHQPEEELCSSLIFHLGK 112
S + ++++ FCKE A + +M ++ G P++ ++L+ L K
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCK 307
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ A C++G +E ++ D K+ ++ S+L +CR G + V+ ++ E
Sbjct: 208 LLDALCKNGSVKEASKVFEDMREKFPP-NLRYFTSLLYGWCREGKLMEAKEVLVQMKEAG 266
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH-SEA 119
+ PD F L+ + AY M DM ++G +P + LI L + EA
Sbjct: 267 LEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEA 326
Query: 120 LSVY-NMLRYS 129
+ V+ M RY
Sbjct: 327 MRVFVEMERYG 337
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ +CR G E K++ + + D+V+ ++L Y G M +M + +
Sbjct: 242 LLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRG 301
Query: 61 ISPDYNTFHILIKYFCK-EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
P+ N + +LI+ C+ EK A R V+M R G + + ++LI K +
Sbjct: 302 FEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKG 361
Query: 120 LSVYNMLR 127
SV + +R
Sbjct: 362 YSVLDDMR 369
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD-MESVMHVMRKLDEL 59
++S + +G + L D + + +V ++ A CRT M+ M V +++
Sbjct: 277 LLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERY 336
Query: 60 AISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEE 100
D T+ LI FCK M Y + DM +KG P +
Sbjct: 337 GCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQ 377
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 40/98 (40%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS FC+ G ++ + D K V ++ A+ + E + ++ K+
Sbjct: 348 LISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRG 407
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
PD ++++I+ CK A R +M G P
Sbjct: 408 CHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSP 445
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHI 70
FEE +L + + D+++ N ++ C+ G+++ + + +++ +SP +TF I
Sbjct: 393 FEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVI 452
Query: 71 LIKYFCKEKMYMLAYRTMVDMHRKG--HQPEEELCSSLIFHL 110
+I F + + A +M +G P+ SL+ +L
Sbjct: 453 MINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNL 494
>sp|Q9SAA6|PPR34_ARATH Pentatricopeptide repeat-containing protein At1g11710,
mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2
SV=1
Length = 657
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELA---ISPDYNTFHILIKYFCKEKMYMLAY 85
+VV N M+ C+TGDM + ++ K+ ++ +SP+ T++ +I FCK LA
Sbjct: 252 NVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGRLDLAE 311
Query: 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
R DM + G E +L+ G+ + EAL
Sbjct: 312 RIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEAL 346
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 15 KQLAGDFEAKYDKY---DVVLLNSMLCAYCRTGDMESVMHVMRKLD--ELAISPDYNTFH 69
+ +AG EA + D+V N++L +TG++E ++ K+ + S TF+
Sbjct: 514 RGMAGAAEAVVNAMEIKDIVTYNTLLNESLKTGNVEEADDILSKMQKQDGEKSVSLVTFN 573
Query: 70 ILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
I+I + CK Y A + M +G P+ +LI K R+ + + +++ L
Sbjct: 574 IMINHLCKFGSYEKAKEVLKFMVERGVVPDSITYGTLITSFSKHRSQEKVVELHDYL 630
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ A+ R+G +E +L + +K + V+ NS++ GD+E M V+R ++
Sbjct: 332 LVDAYGRAGSSDEALRLCDEMTSKGLVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSKN 391
Query: 61 ISPDYNTFHILIKYFCKE 78
+ D T I+++ C+
Sbjct: 392 MQIDRFTQAIVVRGLCRN 409
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMH 92
LN+ + +++ V +++D L + NTF+++I FCKE A M
Sbjct: 186 LNNFMGCLLNVNEIDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRML 245
Query: 93 RKGHQPE 99
+ G P
Sbjct: 246 KCGVWPN 252
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I + CR GC + L + E K K VV NS++ C+ G +++ +
Sbjct: 234 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
I P+ TF++L+ F KE A +M +G P
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 57/127 (44%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
D+V S++ YC ++ M V R + + + + T+ IL++ FC+ LA
Sbjct: 367 DIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELF 426
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148
+M G P+ L+ L +AL ++ L+ SK + ++ I+ + G
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKG 486
Query: 149 KLLKDAY 155
++DA+
Sbjct: 487 GKVEDAW 493
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
DVV NS++ CR+GD + ++RK++E + D T+ +I C++ A
Sbjct: 192 DVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 251
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
+M KG + +SL+ L K ++
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDG 282
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/133 (18%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ C++G + + L D ++ +V+ N +L + + G ++ + +++
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 328
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
ISP+ T++ L+ +C + A + M R P+ +SLI ++ + +
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388
Query: 121 SVYNMLRYSKRSM 133
V+ + SKR +
Sbjct: 389 KVFRNI--SKRGL 399
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 45/99 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ CRSG L E + K DV ++++ + CR G +++ + + ++++
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
I T++ L++ CK + + DM + P
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 48/120 (40%)
Query: 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS 62
SA R+ F E +++ LN M+ +CR V+ K+ +L
Sbjct: 96 SAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYE 155
Query: 63 PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122
PD TF+ LIK E A + M G QP+ +S++ + + S AL +
Sbjct: 156 PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDL 215
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MIS C+ G E L E + + N+++ A+ R GD+ + ++ ++
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573
Query: 61 ISPDYNTFHILI 72
S D ++ ++I
Sbjct: 574 FSADASSIKMVI 585
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+A C++ ++ ++ D + NS+L YC +G + + ++K+
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG 296
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
+ PD T+ +L+ Y CK M A + M ++G +PE
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE 335
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 6/157 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYD---KYDVVLLNSMLCAYCRTGDMESVMHVMRKLD 57
+I + C+ G E+++L FE K +V+ N+++ YC G M+ M ++ +
Sbjct: 482 IIDSHCKEGRVIESEKL---FELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538
Query: 58 ELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117
+ + P+ T+ LI +CK A +M G P+ + ++ L + R +
Sbjct: 539 SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 598
Query: 118 EALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154
A +Y + S + + + ILH L KL DA
Sbjct: 599 AAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDA 635
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 61/126 (48%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ +C +G +E +L + K + V ++++ YC+ ME + + ++++
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPD T++I+++ + + A V + G Q E + ++ L K + +AL
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636
Query: 121 SVYNML 126
++ L
Sbjct: 637 QMFQNL 642
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 8 SGCFEETKQLAGDFEAKYDKY----------DVVLLNSMLCAYCRTGDMESVMHVMRKLD 57
+G F+E GD + Y Y DVV NS++ A C+ M+ M V+ +
Sbjct: 204 NGFFKE-----GDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258
Query: 58 ELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117
+ + PD T++ ++ +C A + M G +P+ S L+ +L K
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318
Query: 118 EALSVYNMLRYSKRSM 133
EA +++ + +KR +
Sbjct: 319 EARKIFDSM--TKRGL 332
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY---MLAYRTMVDMH 92
++CAY + G ++ M V K+ + ++P+ T+ +I CK ML + M+D
Sbjct: 377 LICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-- 434
Query: 93 RKGHQPEEELCSSLIFHL 110
+G P + +SLI L
Sbjct: 435 -EGLSPGNIVYNSLIHGL 451
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSML---CAYCRTGDMESVMHVMRKLD 57
+I CR+G + G+ K + D + +L CA RT D + V+R++
Sbjct: 93 LIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI--VLRRMT 150
Query: 58 ELAISPDYNTFHILIKYFCKEKMYMLAYR---TMVDMHRKGHQPEEELCSSLIFHLGKMR 114
EL P+ +++IL+K C E A M D G P+ +++I K
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEG 210
Query: 115 AHSEALSVY 123
+A S Y
Sbjct: 211 DSDKAYSTY 219
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%)
Query: 37 LCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGH 96
LC R+ + ++H+M PD ++ +I F KE AY T +M +G
Sbjct: 168 LCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGI 227
Query: 97 QPEEELCSSLIFHLGKMRAHSEALSVYNML 126
P+ +S+I L K +A +A+ V N +
Sbjct: 228 LPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/154 (17%), Positives = 63/154 (40%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ +C SG +E + + DVV + ++ C+ G + + +
Sbjct: 272 ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG 331
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ T+ L++ + + + + + M R G P+ + S LI K +A+
Sbjct: 332 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAM 391
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154
V++ +R + + ++ IL ++DA
Sbjct: 392 LVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 425
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 56/132 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C +E ++L + + + + NS++ ++C+ G + + + +
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ P+ T++ LI +C A + + M G +P S+LI K+ +AL
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566
Query: 121 SVYNMLRYSKRS 132
++ + S S
Sbjct: 567 VLFKEMESSGVS 578
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
DVV +++ + + GD + ++ + I PD T++ +I CK + A +
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254
Query: 89 VDMHRKGHQPE 99
M + G P+
Sbjct: 255 NTMVKNGVMPD 265
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 50/98 (51%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
M+S F R+ +++ + + D+V NS++ Y R G+ +++ L++
Sbjct: 637 MLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
+ PD +++ +IK FC+ + A R + +M +G +P
Sbjct: 697 LKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRP 734
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 56/123 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++SA R G E K+ + ++ + V N++L + + G + V+++++E +
Sbjct: 287 VLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENS 346
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
D T++ L+ + + A + M +KG P +++I GK EAL
Sbjct: 347 CPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEAL 406
Query: 121 SVY 123
++
Sbjct: 407 KLF 409
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 48/118 (40%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ F ++G + E + + E D V N ++ AY R G + V+ + +
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKG 381
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118
+ P+ T+ +I + K A + M G P ++++ LGK +E
Sbjct: 382 VMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNE 439
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ + R G + +++ E K D+V N+++ +CR G M+ + ++ ++ E
Sbjct: 672 LMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERG 731
Query: 61 ISP---DYNTF 68
I P YNTF
Sbjct: 732 IRPCIFTYNTF 742
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK-EKMYMLAYRT 87
DV ++L AY RTG E + + ++ E+ SP T+++++ F K + +
Sbjct: 209 DVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGV 268
Query: 88 MVDMHRKGHQPEEELCSS-----------------------------------LIFHLGK 112
+ +M KG + +E CS+ L+ GK
Sbjct: 269 LDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGK 328
Query: 113 MRAHSEALSV 122
++EALSV
Sbjct: 329 AGVYTEALSV 338
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 64/127 (50%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I++F R G +E + + E K D++ NS++ + GD++ +++ E
Sbjct: 483 LIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKG 542
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
++PD T+ L++ F K + +AY +M KG QP + L+ L K +EA+
Sbjct: 543 LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAV 602
Query: 121 SVYNMLR 127
+Y+ ++
Sbjct: 603 DLYSKMK 609
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
D+ N ++ ++ R G+++ +++ +L+ PD +++ LI K A+
Sbjct: 476 DIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRF 535
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVY 123
+M KG P+ S+L+ GK A S++
Sbjct: 536 KEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLF 570
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
M+ + C +G E ++ K D ++ N++ A + + + + K+ +
Sbjct: 413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDG 472
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
SPD T++ILI F + A ++ R +P+ +SLI LGK EA
Sbjct: 473 PSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEA 531
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59
++SA+ S +E + + K D+V N+M+ A CR G M+ ++ + +L++
Sbjct: 163 LLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKN 222
Query: 60 AISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
PD +F+ L++ F + ++++ R M K P +S + L + + ++A
Sbjct: 223 GFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDA 282
Query: 120 LSVYNMLR 127
L++ ++++
Sbjct: 283 LNLIDVMK 290
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE 78
DV N+++ AY ++E VM ++ E ++PD T+ +LI CK+
Sbjct: 297 DVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKK 346
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%)
Query: 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD 64
FC+ G + E K + +VV N+M+ A+CR +M+ + ++ E + P+
Sbjct: 459 FCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPN 518
Query: 65 YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124
T+ ILI F K K A+ + M+ + E + +++I L K+ S+A +
Sbjct: 519 NFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQ 578
Query: 125 MLRYSKR 131
L KR
Sbjct: 579 NLIKEKR 585
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 55/124 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I AF + G EE ++ + V+ S++ YC+ ++ + + +++E
Sbjct: 316 VIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEG 375
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
++PD F +++++FCK A + M P L ++I K + AL
Sbjct: 376 LAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAAL 435
Query: 121 SVYN 124
++N
Sbjct: 436 EIFN 439
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDF--EAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58
+I+ C+ G + K++ + E +Y NS++ + + GD +S + R++ E
Sbjct: 560 IINGLCKVGQTSKAKEMLQNLIKEKRY-SMSCTSYNSIIDGFVKVGDTDSAVETYREMSE 618
Query: 59 LAISPDYNTFHILIKYFCKEKMYMLA 84
SP+ TF LI FCK LA
Sbjct: 619 NGKSPNVVTFTSLINGFCKSNRMDLA 644
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I F + G + + + +VV S++ +C++ M+ + + ++ +
Sbjct: 596 IIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSME 655
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF---HLGKMRA 115
+ D + LI FCK+ AY ++ G P + +SLI +LGKM A
Sbjct: 656 LKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDA 713
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 49/112 (43%)
Query: 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93
N + +C+ G +++ ++ +++ I P+ ++ ++ C+ K LA +M
Sbjct: 453 NKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLE 512
Query: 94 KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145
KG +P S LI K + A V N + S + ++ I++ L
Sbjct: 513 KGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGL 564
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKY--DVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58
++++ R G +E KQ+ E DK ++ N M+ YC+ G++E + K+ E
Sbjct: 189 LLNSLARFGLVDEMKQVY--MEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVE 246
Query: 59 LAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118
+ PD+ T+ LI +C+ K A++ +M KG + E + LI L R E
Sbjct: 247 AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDE 306
Query: 119 ALSVY 123
A+ ++
Sbjct: 307 AMDLF 311
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 34/160 (21%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I + C FE+ ++L G K +V+ N+++ YC+ G +E + V+ ++
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423
Query: 61 ISPDYNTFHILIKYFCKEKMY-----------------MLAYRTMVD------------- 90
+SP+ T++ LIK +CK ++ ++ Y +++D
Sbjct: 424 LSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 483
Query: 91 ----MHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
M+ +G P++ +S+I L K + EA +++ L
Sbjct: 484 LLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +C+S + L E K DVV NS++ CR+G+ +S ++ +++
Sbjct: 434 LIKGYCKSNVHKAMGVLNKMLERKVLP-DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA- 119
+ PD T+ +I CK K A + +KG P + ++LI K EA
Sbjct: 493 LVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAH 552
Query: 120 LSVYNMLRYSKRSMCKALH-EKILHILISGKLLKDAYIV 157
L + ML SK + +L ++H L + LK+A ++
Sbjct: 553 LMLEKML--SKNCLPNSLTFNALIHGLCADGKLKEATLL 589
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 19 GDFEAKYDKYDVVL----------LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF 68
GDF+ Y ++ +L + + YCR G + +M K+ E +SPD T+
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675
Query: 69 HILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR------AHSEALSV 122
LIK + A+ + M G +P + SLI HL +M+ + E ++
Sbjct: 676 SSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAM 735
Query: 123 YNMLRY 128
NM+ +
Sbjct: 736 SNMMEF 741
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI + C+S EE L E K +VV+ +++ YC+ G ++ ++ K+
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112
P+ TF+ LI C + A M + G QP + LI L K
Sbjct: 563 CLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLK 614
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
D +L++ +L + GD + +++ PD +T+ I+ +C+E + A M
Sbjct: 605 DTILIHRLL----KDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMM 660
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127
M G P+ SSLI G + + A V +R
Sbjct: 661 AKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMR 699
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 37 LCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR-KG 95
LCA + ++V+ ++ K+ E +++P+ ++ LI C+ +A + M R +G
Sbjct: 732 LCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEG 791
Query: 96 HQPEEELCSSLIFHLGKMRAHSEALSVYN 124
P E + ++L+ K++ H+EA V +
Sbjct: 792 ISPSELVFNALLSCCCKLKKHNEAAKVVD 820
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 36 MLCAYCRTGDM---ESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMH 92
++ C G++ E V M++ + ISP F+ L+ CK K + A + + DM
Sbjct: 766 LILGICEVGNLRVAEKVFDHMQRNE--GISPSELVFNALLSCCCKLKKHNEAAKVVDDMI 823
Query: 93 RKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
GH P+ E C LI L K SV+ L
Sbjct: 824 CVGHLPQLESCKVLICGLYKKGEKERGTSVFQNL 857
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 43/94 (45%)
Query: 39 AYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
+ C + ++++++++E I P+ +T+ +LI C + + A + M KG P
Sbjct: 332 SLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMP 391
Query: 99 EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS 132
++LI K +A+ V ++ K S
Sbjct: 392 NVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ A C+ E ++ + + ++V ++L Y GDMES V+ ++ +
Sbjct: 197 LVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRG 256
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ +L+ +CK + A M DM + +P E +I L K + EA
Sbjct: 257 WYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEAR 316
Query: 121 SVYN 124
++++
Sbjct: 317 NMFD 320
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 59/145 (40%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ + G E K++ + + D ++ YC+ G VM +++
Sbjct: 232 ILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNE 291
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I P+ T+ ++I+ CKEK A +M + P+ LC +I L + EA
Sbjct: 292 IEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEAC 351
Query: 121 SVYNMLRYSKRSMCKALHEKILHIL 145
++ + + AL ++H L
Sbjct: 352 GLWRKMLKNNCMPDNALLSTLIHWL 376
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
++ N ++ A C+ D+ES V+ ++ + + P+ T+ ++ + A R +
Sbjct: 190 NIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVL 249
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122
+M +G P+ + L+ K+ SEA +V
Sbjct: 250 EEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATV 283
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I C+ G + L + E K K D+++ +++ +C G + ++R + +
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
I+PD F LI F KE A +M ++G P+ +SLI
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLI 359
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC +G +++ +L D + DVV ++++ + + G + + +++ +
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG 347
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
ISPD T+ LI FCKE A + M KG P
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC G E K+L + ++ + D+V +L C G+ E + + K+++
Sbjct: 428 LIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
+ D ++I+I C A+ + KG +P+ + + +I L K + SEA
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEA 546
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/155 (18%), Positives = 67/155 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC+ ++ + +K ++ N ++ YC+ ++ + + RK+
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ D T++ LI+ FC+ +A +M + +P+ L+ L +AL
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKAL 477
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155
++ + SK + ++ I+H + + + DA+
Sbjct: 478 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ C +G E+ ++ E + D+ + N ++ C ++ + L
Sbjct: 463 LLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI-FHLGKMRAHSEA 119
+ PD T++I+I CK+ A M GH P + LI HLG+ A A
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSA 582
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVD 90
V +L C++G M ++RK++E I D + I+I CK+ A+ +
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272
Query: 91 MHRKGHQPEEELCSSLI 107
M KG + + + ++LI
Sbjct: 273 MEIKGFKADIIIYTTLI 289
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+ S R+ ++ L E K +++ L+ M+ CR + M K+ +L
Sbjct: 78 LFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLG 137
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
PD TF LI C E A + M GH+P
Sbjct: 138 YEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 42 RTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEE 101
RT + V+ + ++++ I+ + T I+I C+ + LA+ M + + G++P+
Sbjct: 84 RTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTV 143
Query: 102 LCSSLIFHLGKMRAHSEALSVYN-MLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158
S+LI L SEAL + + M+ + L+ + + ++GK + DA +++
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGK-VSDAVLLI 200
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 56/127 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +C+ G EE K+L + +K + + + N M+ AYC+ G ++ + ++
Sbjct: 475 LIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANG 534
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD T+ LI C A R +M KG + +I L K EA
Sbjct: 535 MDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAF 594
Query: 121 SVYNMLR 127
+Y+ ++
Sbjct: 595 GLYDEMK 601
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%)
Query: 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS 62
S F R ++E KQ K V +++ YC+ G++E + ++ +
Sbjct: 442 SCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQ 501
Query: 63 PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
P+ T++++I +CK+ A + +M G P+ +SLI
Sbjct: 502 PNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLI 546
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I +CR G +E + E K + DV N++ + R + + ++ E
Sbjct: 405 LIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGG 464
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF---------HLG 111
+ ++ LI +CKE A R V+M KG QP + +I+
Sbjct: 465 VKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEAR 524
Query: 112 KMRAHSEA 119
K+RA+ EA
Sbjct: 525 KLRANMEA 532
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%)
Query: 7 RSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN 66
++G + ++L + + + DV + S++ CR G+M+ + +L E +SP
Sbjct: 306 KNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSY 365
Query: 67 TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
T+ LI CK A M +M KG + + ++LI + EA +Y+++
Sbjct: 366 TYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVM 425
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 51/119 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS CR G + L + K +++ C+ G+M + +M ++
Sbjct: 335 LISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKG 394
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
++ F+ LI +C++ M A M +KG Q + C+++ +++ + EA
Sbjct: 395 VNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEA 453
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FCR G + ++ E DV+ N M+ YC+ G++ + + V LD ++
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSV---LDRMS 199
Query: 61 ISPDYNTFHILIKYFC 76
+SPD T++ +++ C
Sbjct: 200 VSPDVVTYNTILRSLC 215
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I A CR +L + + DVV N ++ C+ G ++ + + +
Sbjct: 245 LIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG 304
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
P+ T +I+++ C +M A + + DM RKG P
Sbjct: 305 CQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP 342
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MIS +C++G E + DVV N++L + C +G ++ M V+ ++ +
Sbjct: 178 MISGYCKAG---EINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T+ ILI+ C++ A + + +M +G P+ + L+ + K EA+
Sbjct: 235 CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154
N + S H IL + S DA
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ C+ G +E + D + + +V+ N +L + C TG ++ +
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
SP TF+ILI + C++ + A + M + G QP
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
D+V N+ML A C+ G +E + ++ +L SP T++ +I K A + +
Sbjct: 413 DIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLL 472
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVY 123
+M K +P+ SSL+ L + EA+ +
Sbjct: 473 DEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFF 507
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I ++G + +L + AK K D + +S++ R G ++ + + + +
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I P+ TF+ ++ CK + A +V M +G +P E + LI L EAL
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEAL 574
Query: 121 SVYNML 126
+ N L
Sbjct: 575 ELLNEL 580
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 59/126 (46%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ + C +G + + ++L D K VV N ++ CR G + + ++ K+ +
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
P+ +++ L+ FCKEK A + M +G P+ ++++ L K +A+
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434
Query: 121 SVYNML 126
+ N L
Sbjct: 435 EILNQL 440
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 33/71 (46%)
Query: 7 RSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN 66
R+G EE + + + D++ +++ +CR G ++ L+ PD
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173
Query: 67 TFHILIKYFCK 77
T++++I +CK
Sbjct: 174 TYNVMISGYCK 184
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/127 (17%), Positives = 51/127 (40%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ CR G + + + + N +L +C+ M+ + + ++
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
PD T++ ++ CK+ A + + KG P +++I L K +A+
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAI 469
Query: 121 SVYNMLR 127
+ + +R
Sbjct: 470 KLLDEMR 476
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FC++ F++ + + + DVV S + AYC+ GD V ++ ++ E
Sbjct: 279 LIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENG 338
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+P+ T+ I++ K K A M G P+ + SSLI L K +A
Sbjct: 339 CNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAA 398
Query: 121 SVY 123
++
Sbjct: 399 EIF 401
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 53/128 (41%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYR 86
K D N ++ +C+ + +M + +PD T+ ++ +CKE +
Sbjct: 270 KPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNE 329
Query: 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146
+ +M G P + ++ LGK + +EAL VY ++ + ++HIL
Sbjct: 330 MLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILS 389
Query: 147 SGKLLKDA 154
KDA
Sbjct: 390 KTGRFKDA 397
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++A R F L E K D +L N+++ A +G+++ M + K+ E
Sbjct: 360 LVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESG 419
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGH--QPEEELCSSLIFHLGKMRAHSE 118
P +TF+ LIK + K + R ++DM + QP + C+ L+ R E
Sbjct: 420 CKPTASTFNTLIKGYGKIGKLEESSR-LLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEE 478
Query: 119 ALS-VYNMLRY 128
A + VY M Y
Sbjct: 479 AWNIVYKMQSY 489
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKL-DEL 59
+ + R+G E+ +Q+ + +VV+ ++ +C G+M+ M V +K+ +
Sbjct: 642 LAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIV 701
Query: 60 AISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
+SP+ T+ LI F + K A + DM K P
Sbjct: 702 GLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVP 740
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 45/100 (45%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYR 86
K DVV ++++ A+ GDM+ + + E I PD + F IL K + + A +
Sbjct: 598 KPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQ 657
Query: 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
+ M + G +P + + +I +A+ VY +
Sbjct: 658 ILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM 697
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 49/127 (38%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ +C G EE + + ++ + NS++ + DM+ V V+ ++E
Sbjct: 537 IVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFG 596
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD TF L+ + DM G P+ S L + +A
Sbjct: 597 VKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAE 656
Query: 121 SVYNMLR 127
+ N +R
Sbjct: 657 QILNQMR 663
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESV--MHVMRKLDE 58
++ A+C EE + ++ K DVV N++ AY R G + M + R L
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHN 525
Query: 59 LAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
+ P+ T ++ +C+E A R M G P + +SLI
Sbjct: 526 -KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLI 573
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYF 75
K +V +++ YC G ME + ++ EL + P+ F+ LIK F
Sbjct: 528 KPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGF 576
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY 65
C+SG + +L + +++ K DVV N+++ A + +E + V R++ E P+
Sbjct: 235 CKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNV 294
Query: 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN- 124
T + +IK C++ AYR + +M ++G QP+ L L K SE LS++
Sbjct: 295 ATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSRLEK---PSEILSLFGR 351
Query: 125 MLRYSKRS 132
M+R R
Sbjct: 352 MIRSGVRP 359
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I FCR+ + +L + K +VV S++ A+ R G+ ++ ++ EL
Sbjct: 331 LIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELG 390
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+SPD + ++ + CK AY DM P+ +SLI L + +EA+
Sbjct: 391 LSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAI 450
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIV 157
++ ++ + + + I+ LI GK L AY V
Sbjct: 451 KLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKV 487
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYR 86
K V+ N+++ +C+ G +E + + ++ PD T+++L+ Y+ M A
Sbjct: 217 KLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEG 276
Query: 87 TMVDMHRKGHQ 97
M +M R G Q
Sbjct: 277 VMAEMVRSGIQ 287
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I AF R G K+L D + ++L C++G+++ V + E
Sbjct: 366 LIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHE 425
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I+PD +++ LI C+ A + DM K P+E +I L + + S A
Sbjct: 426 ITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAY 485
Query: 121 SVYNML 126
V++ +
Sbjct: 486 KVWDQM 491
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 42/103 (40%)
Query: 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD 64
C+SG ++ + D D + NS++ CR+G + + + + PD
Sbjct: 405 LCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPD 464
Query: 65 YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
TF +I + K AY+ M KG + ++ +LI
Sbjct: 465 ELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTLI 507
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 37 LCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGH 96
+ C+ + + ++ ++ L PD F++ + C+E A +T M ++G
Sbjct: 86 ISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGR 145
Query: 97 QPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS----MCKALHEKILH 143
+P+ + LI L + ++A+ ++N + S S C AL + H
Sbjct: 146 EPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCH 196
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88
DVV ++++ +CR + + ++ + + + T+ LIK F +E +A + +
Sbjct: 324 DVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLL 383
Query: 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124
M G P+ ++++ HL K +A V+N
Sbjct: 384 DQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFN 419
>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740,
mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2
SV=1
Length = 459
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 69/159 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++ C G + E K+L D E + K +V ++ + G ++ ++ ++ +
Sbjct: 262 LMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEMKKRR 321
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I PD ++IL+ + C E AYR + +M KG +P +I ++ L
Sbjct: 322 IKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMIDGFCRIEDFDSGL 381
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159
+V N + S+ A ++ LI G L A V++
Sbjct: 382 NVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLE 420
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMV 89
VV NS++ CR DM ++ + + I P+ TF +L+K C + Y A + M
Sbjct: 221 VVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMF 280
Query: 90 DMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
DM +G +P L+ LGK EA
Sbjct: 281 DMEYRGCKPGLVNYGILMSDLGKRGRIDEA 310
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR---TGDMESVMHVMRKLD 57
+I+A C++G + + + D + +VV N+++ YC+ G M V++++
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288
Query: 58 ELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117
E +SP+ TF+ILI F K+ + + +M + +P +SLI L S
Sbjct: 289 ENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKIS 348
Query: 118 EALSV 122
EA+S+
Sbjct: 349 EAISM 353
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ CR+G E K+L +K D+V + ++ YCR G+ +++++ ++
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTSK-GLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMG 500
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAY--RTMVDMHRK 94
+ P + T++I++K +CKE A RT ++ R+
Sbjct: 501 LKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERR 536
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I A+C+ G ++ L + E + DV N ++ CR G++E+ + +L
Sbjct: 407 LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG 466
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98
+ PD TFHIL++ +C++ A + +M + G +P
Sbjct: 467 L-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKP 503
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 43/95 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ FC++ +E + G + + + N ++ AYC+ G ++ + +++
Sbjct: 372 LINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG 431
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG 95
I PD T++ LI C+ A + + KG
Sbjct: 432 IVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG 466
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK 77
+V N ++ A C+TG M VM + SP+ +++ LI +CK
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCK 270
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 7/149 (4%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C G E + + + +++ N+++ +C+ ++ + + +
Sbjct: 337 LINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQG 396
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
P +++LI +CK + +M R+G P+ + LI L + A
Sbjct: 397 AVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAK 456
Query: 121 SVYNMLRYSKRSMCKALHEKI-LHILISG 148
+++ L K L + + HIL+ G
Sbjct: 457 KLFDQL------TSKGLPDLVTFHILMEG 479
>sp|Q9M3A8|PP273_ARATH Pentatricopeptide repeat-containing protein At3g49240
OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1
Length = 629
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDK-----YDVVLLNSMLCAYCRTGDMESVMHVMRK 55
++ A +G F+E +L + +++ ++ N M+ YC G E M V R+
Sbjct: 316 VLEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGKFEEAMEVFRQ 375
Query: 56 LDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEE---ELCSSLIFHLGK 112
+ + SPD +F+ L+ C ++ A + +M K +P+E L F GK
Sbjct: 376 MGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMDTCFKEGK 435
Query: 113 MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154
+ E + Y + S A++ ++ LI L DA
Sbjct: 436 I---DEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDA 474
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 71/155 (45%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I F + G +E + + K ++ NS+L A + ++ + + + EL
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+P+ T+ ILI CK + + A+ +M ++G +P +++I L K +EA
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAG 782
Query: 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155
++++ + + A + ++ L +G DA+
Sbjct: 783 ALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAF 817
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHI 70
FEE K+ A + Y+ +L MLC R G +++ + + + + P+ T +I
Sbjct: 366 FEEMKKDAAPNLSTYN-----ILIDMLC---RAGKLDTAFELRDSMQKAGLFPNVRTVNI 417
Query: 71 LIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVY 123
++ CK + A +M K P+E SLI LGK+ +A VY
Sbjct: 418 MVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVY 470
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
MI + +G F+E L AK V+ N +L + G ++ + V ++ + A
Sbjct: 314 MIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA 373
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+P+ +T++ILI C+ A+ M + G P + ++ L K + EA
Sbjct: 374 -APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEAC 432
Query: 121 SVYNMLRY 128
+++ + Y
Sbjct: 433 AMFEEMDY 440
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 44/96 (45%)
Query: 64 DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVY 123
D ++I+I FCK AY+ + +M KG +P S+I L K+ EA ++
Sbjct: 586 DTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645
Query: 124 NMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159
+ + + ++ ++ + +AY++++
Sbjct: 646 EEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILE 681
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/127 (18%), Positives = 48/127 (37%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I F + G + L + ++ D+VL N + ++ + G ++ +++
Sbjct: 209 LIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG 268
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
+ PD T+ +I CK A + + P +++I G EA
Sbjct: 269 LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAY 328
Query: 121 SVYNMLR 127
S+ R
Sbjct: 329 SLLERQR 335
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ C+ G + L E + DVV+ N+++ C+ M+ + K++
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 280
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120
I PD T++ LI C + A R + DM K P+ ++LI K EA
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340
Query: 121 SVYNMLRYSK 130
+Y+ + SK
Sbjct: 341 KLYDEMVKSK 350
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59
++ C +G E T + ++ K D K D+V +M+ A C+ G +E + L
Sbjct: 432 LLDGLCNNGNVE-TALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490
Query: 60 AISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119
+ P+ T+ ++ FC++ + A V+M G P ++LI ++R EA
Sbjct: 491 GVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLI--RARLRDGDEA 548
Query: 120 LS 121
S
Sbjct: 549 AS 550
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+IS C G + + +L D K D+V N+++ A+ + G + + + DE+
Sbjct: 291 LISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKL---VEAEKLYDEMV 347
Query: 61 IS----PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116
S PD ++ LIK FCK K +M ++G ++LI + R
Sbjct: 348 KSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDC 407
Query: 117 SEALSVYNMLRYSKRSMCKALHEKIL--HILISG 148
A V+ K+ + +H I+ +IL+ G
Sbjct: 408 DNAQMVF------KQMVSDGVHPDIMTYNILLDG 435
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%)
Query: 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHI 70
++ L GD +V + +L A + + V+ + ++ L IS + T+ I
Sbjct: 56 LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115
Query: 71 LIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126
I YFC+ LA + M + G+ P +SL+ SEA+++ + +
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 171
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 40 YCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99
+CR + + ++ K+ +L P T + L+ FC A + M G+QP+
Sbjct: 120 FCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPD 179
Query: 100 EELCSSLIFHLGKMRAHSEALSV 122
++L+ L + SEA+++
Sbjct: 180 TVTFTTLVHGLFQHNKASEAVAL 202
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
M+S FCR G EE L + + + N+++ A R GD + +++++
Sbjct: 502 MMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCG 561
Query: 61 ISPDYNTFHIL 71
+ D +TF ++
Sbjct: 562 FAGDASTFGLV 572
>sp|Q9SJN2|PP187_ARATH Pentatricopeptide repeat-containing protein At2g36240
OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1
Length = 497
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 2 ISAFCRSG-------CFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMR 54
I A+CR+ F+ K+L K +V + N+++ Y ++GDM+ + +
Sbjct: 164 IDAYCRARKMDYALLAFDTMKRLIDG------KPNVGVYNTVVNGYVKSGDMDKALRFYQ 217
Query: 55 KLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
++ + PD TF+ILI +C+ + LA +M KG +P ++LI
Sbjct: 218 RMGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLI 270
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 37/75 (49%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+++ + +SG ++ + + K DV N ++ YCR+ + + + R++ E
Sbjct: 199 VVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKG 258
Query: 61 ISPDYNTFHILIKYF 75
P+ +F+ LI+ F
Sbjct: 259 CEPNVVSFNTLIRGF 273
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 42 RTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEE 100
++G E M K+ I PD TF++L++ C A R + KG++P+E
Sbjct: 380 KSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDHSTDANRLRLLASSKGYEPDE 438
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I+ +CRS F+ L + + K + +VV N+++ + +G +E + + ++ EL
Sbjct: 234 LINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELG 293
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107
T IL+ C+E A ++D+ K P E SL+
Sbjct: 294 CRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRVLPSEFDYGSLV 340
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 47/112 (41%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
+I F SG EE ++A + ++ ++ CR G ++ ++ L
Sbjct: 269 LIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKR 328
Query: 61 ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112
+ P + L++ C E + A M ++ +KG P C++L+ L K
Sbjct: 329 VLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQTPCFIACTTLVEGLRK 380
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60
++S+ ++G EE +++ ++EA+ YDV + N +L AY R G++ + + E
Sbjct: 325 VLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERG 384
Query: 61 ISPDYNTFHILIKYFCK----EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116
+P+Y T+ IL++ + K EK ++ V M R +P + ++ + K
Sbjct: 385 GTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKI 444
Query: 117 SEALS 121
EA +
Sbjct: 445 EEATA 449
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,854,620
Number of Sequences: 539616
Number of extensions: 2060619
Number of successful extensions: 7870
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 6182
Number of HSP's gapped (non-prelim): 1533
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)