Query 039637
Match_columns 159
No_of_seqs 197 out of 1407
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 11:39:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.7E-34 8.1E-39 219.5 20.0 157 2-158 586-742 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.2E-34 1.3E-38 218.3 19.9 157 2-158 479-637 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.6E-32 7.8E-37 204.4 16.1 154 1-158 296-449 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.1E-31 4.7E-36 200.2 15.3 154 1-158 331-485 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.5E-29 7.6E-34 191.9 17.4 148 3-158 230-377 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 4.1E-29 8.9E-34 191.6 16.6 159 1-159 259-448 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 1.1E-17 2.4E-22 84.7 6.3 50 28-77 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 2.8E-16 6E-21 79.5 6.3 50 63-112 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.7 1.9E-14 4.1E-19 102.2 17.2 151 4-156 116-270 (389)
10 PRK11788 tetratricopeptide rep 99.7 2.2E-14 4.8E-19 101.9 17.0 153 2-158 148-305 (389)
11 TIGR02917 PEP_TPR_lipo putativ 99.5 3.4E-12 7.4E-17 98.4 19.1 152 3-158 575-726 (899)
12 TIGR02917 PEP_TPR_lipo putativ 99.5 3.1E-12 6.8E-17 98.7 18.7 152 3-159 744-895 (899)
13 TIGR02521 type_IV_pilW type IV 99.5 2.5E-11 5.4E-16 79.8 18.6 153 3-158 39-192 (234)
14 KOG4422 Uncharacterized conser 99.5 4.2E-12 9.2E-17 88.6 14.7 153 1-157 213-378 (625)
15 PF13429 TPR_15: Tetratricopep 99.5 4.6E-12 1E-16 86.5 13.1 153 2-158 117-271 (280)
16 KOG4422 Uncharacterized conser 99.4 7E-12 1.5E-16 87.5 13.6 121 28-152 205-329 (625)
17 TIGR02521 type_IV_pilW type IV 99.4 1.2E-10 2.6E-15 76.6 18.2 153 3-158 73-226 (234)
18 TIGR00990 3a0801s09 mitochondr 99.4 1.9E-10 4E-15 86.5 19.4 151 4-158 340-490 (615)
19 PRK12370 invasion protein regu 99.4 2.9E-10 6.2E-15 84.5 18.0 147 8-158 317-464 (553)
20 PRK15174 Vi polysaccharide exp 99.3 5.1E-10 1.1E-14 84.6 18.6 150 4-158 221-375 (656)
21 PRK15174 Vi polysaccharide exp 99.3 5.2E-10 1.1E-14 84.6 18.1 150 4-158 85-235 (656)
22 PRK09782 bacteriophage N4 rece 99.3 1.3E-09 2.7E-14 85.2 19.3 149 5-158 552-700 (987)
23 PF12854 PPR_1: PPR repeat 99.3 6.6E-12 1.4E-16 57.8 4.2 32 25-56 2-33 (34)
24 PRK12370 invasion protein regu 99.3 1.7E-09 3.6E-14 80.5 18.0 147 4-156 347-494 (553)
25 TIGR00990 3a0801s09 mitochondr 99.2 2.7E-09 5.8E-14 80.4 18.2 148 8-159 307-457 (615)
26 PF12854 PPR_1: PPR repeat 99.2 1.5E-11 3.2E-16 56.6 3.7 32 95-126 2-33 (34)
27 PF13429 TPR_15: Tetratricopep 99.2 1.9E-10 4E-15 78.6 9.6 149 6-158 88-237 (280)
28 PRK10747 putative protoheme IX 99.2 8.2E-09 1.8E-13 73.9 18.2 152 4-158 162-384 (398)
29 COG3063 PilF Tfp pilus assembl 99.2 1E-08 2.3E-13 66.4 16.2 152 3-158 43-196 (250)
30 PRK09782 bacteriophage N4 rece 99.2 1.1E-08 2.3E-13 80.2 18.7 147 5-158 519-666 (987)
31 TIGR00540 hemY_coli hemY prote 99.1 2.4E-08 5.2E-13 71.8 18.5 154 4-158 162-393 (409)
32 KOG1155 Anaphase-promoting com 99.1 1E-08 2.2E-13 72.5 15.8 152 3-158 338-489 (559)
33 KOG4626 O-linked N-acetylgluco 99.1 1E-09 2.2E-14 80.2 11.0 146 5-157 296-444 (966)
34 PRK11189 lipoprotein NlpI; Pro 99.1 5.7E-08 1.2E-12 67.0 19.0 118 4-126 73-191 (296)
35 PRK10049 pgaA outer membrane p 99.1 2.3E-08 5.1E-13 77.1 18.6 83 73-157 367-449 (765)
36 PRK11447 cellulose synthase su 99.1 2.1E-08 4.5E-13 80.5 18.0 55 4-59 470-524 (1157)
37 TIGR03302 OM_YfiO outer membra 99.1 4.2E-08 9E-13 65.4 16.8 153 3-158 41-226 (235)
38 PRK11447 cellulose synthase su 99.1 2.5E-08 5.3E-13 80.1 17.8 150 3-159 581-735 (1157)
39 PRK10049 pgaA outer membrane p 99.1 7.1E-08 1.5E-12 74.5 19.4 151 2-158 22-173 (765)
40 PRK10370 formate-dependent nit 99.0 7.3E-08 1.6E-12 62.6 15.5 133 8-146 52-188 (198)
41 KOG4626 O-linked N-acetylgluco 99.0 2.2E-08 4.8E-13 73.4 13.8 145 6-156 331-477 (966)
42 PRK14574 hmsH outer membrane p 99.0 2E-07 4.3E-12 72.0 18.7 154 4-158 301-473 (822)
43 PRK10747 putative protoheme IX 99.0 2.1E-07 4.5E-12 66.8 17.1 84 41-127 129-214 (398)
44 TIGR00756 PPR pentatricopeptid 99.0 1.8E-09 3.9E-14 49.9 4.2 33 32-64 2-34 (35)
45 PRK15179 Vi polysaccharide bio 98.9 2.9E-07 6.2E-12 69.9 17.5 129 27-159 83-212 (694)
46 COG2956 Predicted N-acetylgluc 98.9 2E-07 4.3E-12 63.5 14.7 153 4-158 116-272 (389)
47 PRK14574 hmsH outer membrane p 98.9 3.6E-07 7.8E-12 70.6 17.7 147 4-158 43-192 (822)
48 TIGR00540 hemY_coli hemY prote 98.9 2.9E-07 6.2E-12 66.3 16.3 151 5-158 128-286 (409)
49 cd05804 StaR_like StaR_like; a 98.9 3.4E-07 7.3E-12 64.6 16.4 151 4-159 52-210 (355)
50 COG2956 Predicted N-acetylgluc 98.9 3.5E-07 7.6E-12 62.3 15.2 149 5-158 45-203 (389)
51 KOG1126 DNA-binding cell divis 98.9 2.5E-08 5.4E-13 73.0 10.4 152 3-158 361-546 (638)
52 PF13812 PPR_3: Pentatricopept 98.9 3.2E-09 6.9E-14 48.9 3.9 33 31-63 2-34 (34)
53 KOG1129 TPR repeat-containing 98.9 6.8E-08 1.5E-12 66.0 11.6 150 2-157 230-380 (478)
54 TIGR02552 LcrH_SycD type III s 98.9 4.7E-07 1E-11 55.1 14.5 110 17-129 5-114 (135)
55 COG5010 TadD Flp pilus assembl 98.9 9.3E-07 2E-11 58.4 16.4 148 7-158 78-225 (257)
56 KOG1155 Anaphase-promoting com 98.9 6.2E-07 1.3E-11 63.8 15.6 150 3-156 372-528 (559)
57 PRK11189 lipoprotein NlpI; Pro 98.8 1.2E-06 2.6E-11 60.5 16.7 146 8-158 39-188 (296)
58 COG3071 HemY Uncharacterized e 98.8 1.4E-06 3.1E-11 60.7 16.7 150 2-158 194-384 (400)
59 TIGR00756 PPR pentatricopeptid 98.8 7.5E-09 1.6E-13 47.8 4.1 33 67-99 2-34 (35)
60 PF08579 RPM2: Mitochondrial r 98.8 9.3E-08 2E-12 55.4 9.0 81 32-112 27-116 (120)
61 COG3063 PilF Tfp pilus assembl 98.8 2.3E-06 5E-11 55.8 16.0 151 3-156 77-228 (250)
62 KOG0547 Translocase of outer m 98.8 3.9E-07 8.4E-12 65.2 13.4 151 5-159 404-561 (606)
63 PF13812 PPR_3: Pentatricopept 98.8 1.2E-08 2.6E-13 46.9 4.1 33 66-98 2-34 (34)
64 PF08579 RPM2: Mitochondrial r 98.8 2.8E-07 6E-12 53.4 10.2 82 67-148 27-117 (120)
65 KOG1126 DNA-binding cell divis 98.8 1.4E-07 3E-12 69.3 11.1 147 4-155 430-611 (638)
66 PRK15359 type III secretion sy 98.8 1.4E-06 3E-11 53.8 14.0 108 16-129 14-121 (144)
67 KOG2003 TPR repeat-containing 98.8 9.2E-07 2E-11 63.2 14.5 146 7-158 536-683 (840)
68 PF10037 MRP-S27: Mitochondria 98.8 5.7E-07 1.2E-11 64.4 13.1 124 25-148 61-186 (429)
69 KOG1840 Kinesin light chain [C 98.7 1E-06 2.3E-11 64.4 14.2 158 2-159 206-391 (508)
70 COG5010 TadD Flp pilus assembl 98.7 1.9E-06 4.1E-11 57.0 13.9 121 3-127 108-229 (257)
71 PRK15359 type III secretion sy 98.7 2.2E-06 4.9E-11 52.9 13.3 91 3-95 32-122 (144)
72 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2.8E-06 6.2E-11 60.5 15.4 122 31-158 170-291 (395)
73 PRK15179 Vi polysaccharide bio 98.7 4.9E-06 1.1E-10 63.4 17.2 123 3-129 94-217 (694)
74 PF09976 TPR_21: Tetratricopep 98.7 4.8E-06 1E-10 51.4 14.4 122 32-158 14-141 (145)
75 COG3071 HemY Uncharacterized e 98.7 5.4E-06 1.2E-10 57.9 15.7 153 5-159 163-352 (400)
76 PF09976 TPR_21: Tetratricopep 98.7 5.1E-06 1.1E-10 51.3 14.5 118 7-126 23-144 (145)
77 PF01535 PPR: PPR repeat; Int 98.7 2.3E-08 4.9E-13 44.9 3.0 29 32-60 2-30 (31)
78 PF10037 MRP-S27: Mitochondria 98.7 2.9E-07 6.4E-12 65.8 9.7 111 3-113 74-186 (429)
79 TIGR02552 LcrH_SycD type III s 98.7 1.6E-06 3.5E-11 52.7 11.8 98 3-104 25-122 (135)
80 PRK10370 formate-dependent nit 98.7 1E-05 2.2E-10 52.7 15.8 142 3-159 24-168 (198)
81 COG4783 Putative Zn-dependent 98.7 1.1E-05 2.4E-10 57.8 16.7 119 5-127 316-435 (484)
82 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.3E-06 5E-11 60.9 13.3 120 2-127 176-295 (395)
83 PF04733 Coatomer_E: Coatomer 98.6 1.6E-06 3.4E-11 59.6 11.3 118 29-151 130-251 (290)
84 KOG1840 Kinesin light chain [C 98.6 8.6E-06 1.9E-10 59.7 15.6 156 3-158 291-473 (508)
85 KOG1173 Anaphase-promoting com 98.6 4.2E-06 9.2E-11 60.9 13.7 140 4-147 389-534 (611)
86 PF01535 PPR: PPR repeat; Int 98.6 1.2E-07 2.7E-12 42.4 3.7 29 67-95 2-30 (31)
87 KOG2002 TPR-containing nuclear 98.6 1.4E-06 3.1E-11 66.7 11.1 130 8-139 625-755 (1018)
88 KOG1129 TPR repeat-containing 98.6 9.9E-07 2.2E-11 60.5 9.4 123 3-128 264-386 (478)
89 KOG4318 Bicoid mRNA stability 98.6 1.3E-06 2.9E-11 66.5 10.8 88 63-153 202-289 (1088)
90 PF12895 Apc3: Anaphase-promot 98.6 2.8E-07 6.2E-12 51.5 5.6 80 8-90 2-83 (84)
91 KOG2076 RNA polymerase III tra 98.5 3.6E-05 7.9E-10 58.9 17.8 147 8-158 152-303 (895)
92 cd05804 StaR_like StaR_like; a 98.5 3.6E-05 7.9E-10 54.3 16.9 88 4-92 123-213 (355)
93 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.1E-05 4.5E-10 46.5 13.2 96 32-129 4-105 (119)
94 TIGR03302 OM_YfiO outer membra 98.5 1.6E-05 3.4E-10 53.0 13.7 124 3-128 78-231 (235)
95 KOG2003 TPR repeat-containing 98.5 2.7E-05 6E-10 55.9 15.2 144 3-151 566-710 (840)
96 cd00189 TPR Tetratricopeptide 98.5 1.1E-05 2.3E-10 45.0 11.3 94 33-128 3-96 (100)
97 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.1E-05 2.4E-10 47.6 11.7 91 3-95 10-106 (119)
98 PF04733 Coatomer_E: Coatomer 98.5 9.1E-06 2E-10 55.9 12.4 123 2-129 138-265 (290)
99 cd00189 TPR Tetratricopeptide 98.5 7.9E-06 1.7E-10 45.5 10.1 90 3-94 8-97 (100)
100 KOG2076 RNA polymerase III tra 98.4 2.9E-05 6.3E-10 59.4 14.9 143 13-156 395-547 (895)
101 PLN03088 SGT1, suppressor of 98.4 1.9E-05 4.1E-10 56.0 13.4 89 4-95 11-100 (356)
102 KOG0547 Translocase of outer m 98.4 2.4E-05 5.2E-10 56.4 13.6 149 6-159 337-486 (606)
103 PF06239 ECSIT: Evolutionarily 98.4 4.6E-06 9.9E-11 54.1 8.9 89 27-115 44-153 (228)
104 PF06239 ECSIT: Evolutionarily 98.4 1.6E-05 3.4E-10 51.7 11.2 100 50-151 34-154 (228)
105 PF14559 TPR_19: Tetratricopep 98.4 2.9E-06 6.2E-11 45.3 6.6 63 6-71 2-64 (68)
106 KOG4318 Bicoid mRNA stability 98.4 6.3E-07 1.4E-11 68.2 5.0 91 16-118 11-101 (1088)
107 PF12895 Apc3: Anaphase-promot 98.4 1.9E-06 4.1E-11 48.1 5.8 81 43-125 2-83 (84)
108 PRK02603 photosystem I assembl 98.3 0.00019 4.1E-09 45.6 15.1 117 29-150 34-166 (172)
109 PF05843 Suf: Suppressor of fo 98.3 5.5E-05 1.2E-09 51.9 13.0 124 2-128 8-135 (280)
110 CHL00033 ycf3 photosystem I as 98.3 5.6E-05 1.2E-09 47.8 12.0 114 11-125 15-138 (168)
111 COG4783 Putative Zn-dependent 98.3 7.9E-05 1.7E-09 53.6 13.5 115 37-156 313-429 (484)
112 PF13432 TPR_16: Tetratricopep 98.3 6.3E-06 1.4E-10 43.6 6.4 55 3-58 5-59 (65)
113 KOG3081 Vesicle coat complex C 98.3 0.00019 4E-09 48.2 14.1 85 40-128 147-235 (299)
114 PF12569 NARP1: NMDA receptor- 98.3 0.00028 6.1E-09 52.3 16.5 128 28-158 190-328 (517)
115 KOG3081 Vesicle coat complex C 98.3 0.0001 2.3E-09 49.3 12.7 133 17-159 95-231 (299)
116 PF12569 NARP1: NMDA receptor- 98.3 0.00039 8.4E-09 51.6 17.0 139 14-158 130-285 (517)
117 KOG1915 Cell cycle control pro 98.3 0.00016 3.5E-09 52.3 14.4 142 9-157 87-229 (677)
118 KOG3060 Uncharacterized conser 98.2 0.00035 7.6E-09 46.6 14.8 83 43-127 99-181 (289)
119 KOG3060 Uncharacterized conser 98.2 0.00048 1E-08 46.0 16.1 143 9-155 26-174 (289)
120 PRK15363 pathogenicity island 98.2 7E-05 1.5E-09 46.4 10.7 97 29-128 34-131 (157)
121 KOG1070 rRNA processing protei 98.2 0.00021 4.5E-09 57.5 15.5 147 2-152 1537-1688(1710)
122 PLN03088 SGT1, suppressor of 98.2 0.00014 3E-09 51.7 13.0 90 37-129 9-99 (356)
123 PF05843 Suf: Suppressor of fo 98.2 9.1E-05 2E-09 50.9 11.7 125 31-158 2-130 (280)
124 PRK10866 outer membrane biogen 98.2 0.00074 1.6E-08 45.5 17.7 152 4-158 41-235 (243)
125 KOG0495 HAT repeat protein [RN 98.1 0.00075 1.6E-08 50.8 16.2 124 29-156 583-706 (913)
126 KOG1125 TPR repeat-containing 98.1 0.00065 1.4E-08 50.0 15.6 151 4-158 294-487 (579)
127 KOG4340 Uncharacterized conser 98.1 0.00017 3.7E-09 49.3 12.0 151 5-158 154-333 (459)
128 KOG0495 HAT repeat protein [RN 98.1 0.00061 1.3E-08 51.2 15.5 149 5-157 594-775 (913)
129 PRK14720 transcript cleavage f 98.1 0.00014 3E-09 56.9 12.9 59 67-127 118-176 (906)
130 KOG2376 Signal recognition par 98.1 0.00035 7.7E-09 51.6 14.2 145 2-158 19-198 (652)
131 PF13371 TPR_9: Tetratricopept 98.1 5.1E-05 1.1E-09 40.9 7.9 62 2-66 2-63 (73)
132 PRK15363 pathogenicity island 98.1 0.00027 5.9E-09 43.9 11.4 88 5-94 45-132 (157)
133 KOG1070 rRNA processing protei 98.1 0.00053 1.1E-08 55.4 15.5 120 4-126 1467-1590(1710)
134 KOG2002 TPR-containing nuclear 98.1 0.00038 8.2E-09 54.1 14.3 119 29-148 269-389 (1018)
135 PRK10153 DNA-binding transcrip 98.1 0.001 2.2E-08 49.6 16.1 130 25-158 332-476 (517)
136 KOG1915 Cell cycle control pro 98.1 0.00063 1.4E-08 49.4 14.3 148 6-158 118-267 (677)
137 KOG0553 TPR repeat-containing 98.1 0.0002 4.4E-09 48.7 11.2 99 5-108 91-190 (304)
138 CHL00033 ycf3 photosystem I as 98.1 0.00021 4.5E-09 45.2 10.9 86 3-90 43-138 (168)
139 PRK02603 photosystem I assembl 98.0 0.00062 1.3E-08 43.3 12.9 75 4-80 44-121 (172)
140 PF03704 BTAD: Bacterial trans 98.0 3.3E-05 7.2E-10 47.7 6.8 73 31-104 63-140 (146)
141 KOG3785 Uncharacterized conser 98.0 0.00043 9.4E-09 48.5 12.2 149 4-158 294-451 (557)
142 KOG1125 TPR repeat-containing 98.0 0.00022 4.7E-09 52.4 11.1 143 9-155 408-562 (579)
143 PLN02789 farnesyltranstransfer 98.0 0.0022 4.8E-08 44.9 16.2 141 4-148 46-189 (320)
144 KOG1914 mRNA cleavage and poly 98.0 0.0014 2.9E-08 48.3 14.8 145 10-157 346-494 (656)
145 PF03704 BTAD: Bacterial trans 98.0 0.00067 1.4E-08 41.8 11.9 70 67-137 64-138 (146)
146 KOG1174 Anaphase-promoting com 97.9 0.0016 3.4E-08 46.6 13.8 148 5-158 344-494 (564)
147 KOG1128 Uncharacterized conser 97.9 0.00039 8.4E-09 52.5 11.4 152 2-158 431-610 (777)
148 PF12921 ATP13: Mitochondrial 97.9 0.00066 1.4E-08 40.9 10.2 99 29-147 1-100 (126)
149 PF12688 TPR_5: Tetratrico pep 97.9 0.00095 2.1E-08 39.8 10.8 108 36-147 7-118 (120)
150 PF14559 TPR_19: Tetratricopep 97.9 0.00016 3.5E-09 38.3 6.7 51 77-128 3-53 (68)
151 PRK10153 DNA-binding transcrip 97.9 0.0022 4.9E-08 47.8 14.6 118 9-129 356-482 (517)
152 PF13414 TPR_11: TPR repeat; P 97.8 0.00031 6.8E-09 37.3 7.7 62 30-93 3-66 (69)
153 PF04840 Vps16_C: Vps16, C-ter 97.8 0.002 4.4E-08 45.1 13.4 100 36-155 183-282 (319)
154 KOG1173 Anaphase-promoting com 97.8 0.0017 3.7E-08 47.9 13.2 116 40-158 390-512 (611)
155 PF12688 TPR_5: Tetratrico pep 97.8 0.002 4.2E-08 38.5 13.2 103 4-112 10-118 (120)
156 PRK10803 tol-pal system protei 97.8 0.0013 2.9E-08 44.7 11.8 97 31-129 144-246 (263)
157 PF14938 SNAP: Soluble NSF att 97.8 0.00054 1.2E-08 47.1 10.1 153 4-158 44-219 (282)
158 PF13432 TPR_16: Tetratricopep 97.8 0.00033 7.1E-09 36.8 7.2 55 73-128 5-59 (65)
159 KOG2053 Mitochondrial inherita 97.8 0.0066 1.4E-07 47.2 16.2 149 6-158 54-213 (932)
160 PF13414 TPR_11: TPR repeat; P 97.8 0.00042 9E-09 36.9 7.5 64 64-128 2-66 (69)
161 PRK10803 tol-pal system protei 97.8 0.0015 3.1E-08 44.5 11.6 87 6-94 154-246 (263)
162 PRK14720 transcript cleavage f 97.8 0.0028 6.1E-08 49.9 14.3 139 3-146 124-268 (906)
163 PRK04841 transcriptional regul 97.7 0.0049 1.1E-07 49.1 16.0 155 4-158 461-635 (903)
164 KOG0553 TPR repeat-containing 97.7 0.0017 3.7E-08 44.3 11.3 100 39-143 90-190 (304)
165 COG4700 Uncharacterized protei 97.7 0.0041 8.8E-08 40.0 15.5 126 26-155 85-213 (251)
166 PF12921 ATP13: Mitochondrial 97.7 0.0022 4.9E-08 38.6 10.6 93 1-113 8-101 (126)
167 KOG1914 mRNA cleavage and poly 97.7 0.0053 1.1E-07 45.4 14.0 146 11-159 309-459 (656)
168 KOG1128 Uncharacterized conser 97.7 0.003 6.5E-08 48.0 13.0 143 3-158 406-576 (777)
169 PF04840 Vps16_C: Vps16, C-ter 97.7 0.00094 2E-08 46.7 9.9 106 2-127 184-289 (319)
170 COG4235 Cytochrome c biogenesi 97.7 0.0073 1.6E-07 41.3 14.5 115 12-130 139-257 (287)
171 KOG1174 Anaphase-promoting com 97.6 0.011 2.3E-07 42.6 14.2 148 6-157 207-390 (564)
172 smart00299 CLH Clathrin heavy 97.6 0.0048 1E-07 37.8 14.8 124 2-148 14-138 (140)
173 COG4700 Uncharacterized protei 97.6 0.0065 1.4E-07 39.1 13.8 122 2-125 96-218 (251)
174 PLN02789 farnesyltranstransfer 97.6 0.011 2.4E-07 41.5 16.2 134 10-147 87-229 (320)
175 PRK15331 chaperone protein Sic 97.6 0.0022 4.8E-08 40.2 9.6 88 38-128 45-133 (165)
176 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.0036 7.8E-08 45.4 11.8 64 29-94 74-141 (453)
177 KOG3785 Uncharacterized conser 97.6 0.001 2.2E-08 46.7 8.8 121 5-130 369-491 (557)
178 KOG3616 Selective LIM binding 97.6 0.0008 1.7E-08 51.5 8.6 78 3-91 740-817 (1636)
179 KOG4162 Predicted calmodulin-b 97.5 0.0074 1.6E-07 46.2 13.3 121 3-127 658-781 (799)
180 PF13424 TPR_12: Tetratricopep 97.5 0.00076 1.6E-08 36.8 6.4 62 31-92 6-73 (78)
181 KOG1127 TPR repeat-containing 97.5 0.0037 8E-08 49.3 11.6 148 4-158 501-653 (1238)
182 KOG1156 N-terminal acetyltrans 97.5 0.022 4.7E-07 43.1 15.0 59 98-158 367-428 (700)
183 KOG2053 Mitochondrial inherita 97.5 0.015 3.2E-07 45.4 14.4 112 5-122 19-132 (932)
184 PF13371 TPR_9: Tetratricopept 97.5 0.0011 2.3E-08 35.6 6.5 54 74-128 4-57 (73)
185 KOG2796 Uncharacterized conser 97.4 0.0095 2.1E-07 40.4 11.3 124 8-132 190-318 (366)
186 PF13424 TPR_12: Tetratricopep 97.4 0.00056 1.2E-08 37.3 4.9 62 66-127 6-73 (78)
187 KOG3941 Intermediate in Toll s 97.4 0.004 8.7E-08 42.5 9.2 90 27-116 64-174 (406)
188 KOG3616 Selective LIM binding 97.3 0.0076 1.7E-07 46.5 11.0 109 37-158 739-847 (1636)
189 PRK04841 transcriptional regul 97.3 0.06 1.3E-06 43.1 16.6 154 5-158 419-596 (903)
190 PF13525 YfiO: Outer membrane 97.2 0.024 5.1E-07 37.1 16.1 147 4-155 14-198 (203)
191 PF14938 SNAP: Soluble NSF att 97.2 0.016 3.4E-07 40.0 11.3 141 6-147 85-247 (282)
192 KOG2376 Signal recognition par 97.2 0.052 1.1E-06 40.7 14.2 137 10-149 356-506 (652)
193 KOG3941 Intermediate in Toll s 97.2 0.0088 1.9E-07 41.0 9.6 89 62-150 64-173 (406)
194 KOG0985 Vesicle coat protein c 97.2 0.039 8.4E-07 44.2 13.9 86 30-123 1104-1189(1666)
195 KOG0624 dsRNA-activated protei 97.2 0.044 9.5E-07 38.7 15.2 54 4-58 47-100 (504)
196 KOG1156 N-terminal acetyltrans 97.1 0.05 1.1E-06 41.2 13.5 149 6-157 52-207 (700)
197 COG3629 DnrI DNA-binding trans 97.1 0.0077 1.7E-07 41.2 8.5 82 30-112 153-239 (280)
198 KOG0548 Molecular co-chaperone 97.1 0.015 3.3E-07 42.8 10.4 104 3-110 10-114 (539)
199 KOG2047 mRNA splicing factor [ 97.1 0.087 1.9E-06 40.2 14.1 83 6-92 113-196 (835)
200 COG1729 Uncharacterized protei 97.0 0.036 7.8E-07 37.6 10.8 99 30-129 142-244 (262)
201 KOG0985 Vesicle coat protein c 97.0 0.1 2.2E-06 42.0 14.3 132 5-158 1058-1189(1666)
202 PF13170 DUF4003: Protein of u 96.9 0.064 1.4E-06 37.4 12.1 127 11-139 78-221 (297)
203 smart00299 CLH Clathrin heavy 96.9 0.039 8.4E-07 33.7 11.4 87 33-127 10-96 (140)
204 KOG4162 Predicted calmodulin-b 96.9 0.11 2.4E-06 40.3 13.6 124 32-158 652-777 (799)
205 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.054 1.2E-06 39.7 11.5 122 30-155 397-522 (660)
206 KOG0543 FKBP-type peptidyl-pro 96.9 0.07 1.5E-06 38.2 11.9 123 3-128 216-354 (397)
207 KOG0548 Molecular co-chaperone 96.8 0.13 2.8E-06 38.2 14.4 90 38-129 366-455 (539)
208 cd00923 Cyt_c_Oxidase_Va Cytoc 96.8 0.022 4.8E-07 32.4 7.2 48 45-92 22-69 (103)
209 PF10602 RPN7: 26S proteasome 96.8 0.054 1.2E-06 34.7 10.0 98 31-128 37-141 (177)
210 KOG4340 Uncharacterized conser 96.8 0.027 5.9E-07 39.0 8.9 149 4-157 19-200 (459)
211 PF13281 DUF4071: Domain of un 96.8 0.12 2.6E-06 37.1 15.0 154 3-158 149-328 (374)
212 KOG0543 FKBP-type peptidyl-pro 96.7 0.082 1.8E-06 37.9 11.5 112 38-151 216-341 (397)
213 KOG3617 WD40 and TPR repeat-co 96.7 0.061 1.3E-06 42.3 11.5 137 4-159 737-882 (1416)
214 KOG1127 TPR repeat-containing 96.7 0.036 7.8E-07 44.1 10.3 85 5-93 572-658 (1238)
215 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.052 1.1E-06 39.6 10.6 64 64-129 74-141 (453)
216 COG4235 Cytochrome c biogenesi 96.7 0.11 2.4E-06 35.8 11.4 101 2-107 163-267 (287)
217 PF09613 HrpB1_HrpK: Bacterial 96.7 0.071 1.5E-06 33.4 11.8 107 41-154 21-128 (160)
218 PRK15331 chaperone protein Sic 96.6 0.078 1.7E-06 33.4 11.3 88 5-94 47-134 (165)
219 PF10300 DUF3808: Protein of u 96.6 0.18 3.9E-06 37.5 14.0 154 2-158 195-370 (468)
220 PF07079 DUF1347: Protein of u 96.6 0.17 3.7E-06 37.1 13.2 140 6-149 17-181 (549)
221 PF02284 COX5A: Cytochrome c o 96.6 0.02 4.4E-07 32.9 6.3 50 45-94 25-74 (108)
222 PRK10866 outer membrane biogen 96.6 0.12 2.5E-06 35.0 13.3 125 2-128 76-240 (243)
223 KOG4555 TPR repeat-containing 96.6 0.072 1.6E-06 32.4 11.1 89 39-128 52-143 (175)
224 COG3629 DnrI DNA-binding trans 96.6 0.08 1.7E-06 36.4 10.2 78 66-144 154-236 (280)
225 PF13929 mRNA_stabil: mRNA sta 96.5 0.14 3.1E-06 35.2 12.6 137 10-146 143-289 (292)
226 PF10300 DUF3808: Protein of u 96.5 0.17 3.6E-06 37.7 12.3 138 8-148 246-401 (468)
227 PF13428 TPR_14: Tetratricopep 96.4 0.019 4.2E-07 27.5 5.1 27 102-128 3-29 (44)
228 KOG0624 dsRNA-activated protei 96.4 0.2 4.2E-06 35.7 13.3 149 4-156 164-362 (504)
229 PF02284 COX5A: Cytochrome c o 96.4 0.043 9.3E-07 31.6 6.9 64 80-144 25-88 (108)
230 PF13428 TPR_14: Tetratricopep 96.4 0.011 2.4E-07 28.4 4.0 28 32-59 3-30 (44)
231 PF00637 Clathrin: Region in C 96.4 0.0018 3.9E-08 39.8 1.3 84 1-91 13-96 (143)
232 PF09205 DUF1955: Domain of un 96.3 0.12 2.5E-06 31.5 12.7 124 5-132 12-152 (161)
233 COG4649 Uncharacterized protei 96.3 0.15 3.3E-06 32.6 13.6 129 5-133 68-200 (221)
234 KOG2796 Uncharacterized conser 96.2 0.23 5E-06 34.0 11.0 124 34-158 181-309 (366)
235 KOG2047 mRNA splicing factor [ 96.1 0.43 9.3E-06 36.7 15.4 92 3-94 395-506 (835)
236 KOG4570 Uncharacterized conser 96.1 0.14 3E-06 35.8 9.4 102 25-128 59-163 (418)
237 KOG4555 TPR repeat-containing 96.1 0.15 3.3E-06 31.1 9.6 92 4-96 52-146 (175)
238 PF13176 TPR_7: Tetratricopept 96.1 0.022 4.7E-07 26.1 4.0 24 33-56 2-25 (36)
239 COG5107 RNA14 Pre-mRNA 3'-end 96.1 0.38 8.2E-06 35.5 12.4 138 3-146 405-546 (660)
240 COG4105 ComL DNA uptake lipopr 96.0 0.27 5.8E-06 33.3 17.4 152 5-157 44-226 (254)
241 KOG2610 Uncharacterized conser 96.0 0.35 7.5E-06 34.4 11.3 149 8-159 116-271 (491)
242 PF13431 TPR_17: Tetratricopep 95.9 0.014 2.9E-07 26.5 2.8 31 19-50 3-33 (34)
243 COG3118 Thioredoxin domain-con 95.9 0.35 7.6E-06 33.5 13.6 145 4-151 143-288 (304)
244 PF04184 ST7: ST7 protein; In 95.8 0.54 1.2E-05 35.0 13.9 74 69-142 263-338 (539)
245 PF10602 RPN7: 26S proteasome 95.8 0.27 5.9E-06 31.5 9.7 93 66-158 37-136 (177)
246 PF11207 DUF2989: Protein of u 95.8 0.2 4.2E-06 32.7 8.5 81 74-156 116-199 (203)
247 PF11207 DUF2989: Protein of u 95.8 0.28 6.1E-06 32.0 9.2 74 46-120 122-198 (203)
248 PF09205 DUF1955: Domain of un 95.8 0.11 2.4E-06 31.6 6.8 86 6-97 67-152 (161)
249 KOG4077 Cytochrome c oxidase, 95.7 0.16 3.4E-06 30.6 7.3 61 82-143 66-126 (149)
250 KOG0550 Molecular chaperone (D 95.7 0.43 9.2E-06 34.7 10.6 50 42-91 261-313 (486)
251 KOG4570 Uncharacterized conser 95.6 0.15 3.2E-06 35.7 7.9 85 7-95 76-165 (418)
252 KOG2280 Vacuolar assembly/sort 95.6 0.18 4E-06 39.1 9.0 109 30-157 684-792 (829)
253 PF07035 Mic1: Colon cancer-as 95.6 0.32 6.9E-06 30.9 13.8 102 15-127 14-116 (167)
254 PF13176 TPR_7: Tetratricopept 95.6 0.043 9.4E-07 25.0 3.8 23 68-90 2-24 (36)
255 KOG2114 Vacuolar assembly/sort 95.5 0.92 2E-05 35.9 13.4 141 2-155 341-483 (933)
256 PF13512 TPR_18: Tetratricopep 95.4 0.33 7.1E-06 29.9 10.9 52 7-58 22-75 (142)
257 PF00515 TPR_1: Tetratricopept 95.4 0.072 1.6E-06 23.7 4.2 27 32-58 3-29 (34)
258 KOG2280 Vacuolar assembly/sort 95.3 0.16 3.5E-06 39.3 7.9 101 4-123 693-793 (829)
259 cd00923 Cyt_c_Oxidase_Va Cytoc 95.3 0.27 5.8E-06 28.1 9.3 64 80-144 22-85 (103)
260 PF13281 DUF4071: Domain of un 95.2 0.77 1.7E-05 33.1 14.0 125 8-135 195-339 (374)
261 PF04184 ST7: ST7 protein; In 95.2 0.8 1.7E-05 34.2 10.8 68 5-72 269-338 (539)
262 PF13512 TPR_18: Tetratricopep 95.2 0.41 8.8E-06 29.5 11.7 86 29-115 9-97 (142)
263 COG3898 Uncharacterized membra 95.0 0.95 2.1E-05 32.9 14.2 18 6-23 131-148 (531)
264 COG1729 Uncharacterized protei 94.9 0.76 1.6E-05 31.4 13.5 89 6-94 152-244 (262)
265 KOG2610 Uncharacterized conser 94.9 0.93 2E-05 32.3 10.2 115 42-158 115-232 (491)
266 PF04053 Coatomer_WDAD: Coatom 94.9 1.1 2.4E-05 33.2 13.3 74 39-127 327-400 (443)
267 COG3898 Uncharacterized membra 94.8 1.1 2.4E-05 32.6 16.1 103 8-115 167-309 (531)
268 KOG3617 WD40 and TPR repeat-co 94.8 0.41 8.9E-06 38.0 8.8 20 139-158 971-990 (1416)
269 COG4455 ImpE Protein of avirul 94.8 0.33 7.2E-06 32.3 7.2 73 2-75 8-82 (273)
270 PRK11906 transcriptional regul 94.7 1.2 2.7E-05 32.9 12.9 111 8-124 317-431 (458)
271 KOG2041 WD40 repeat protein [G 94.6 1 2.2E-05 35.3 10.3 37 9-54 748-784 (1189)
272 PF07719 TPR_2: Tetratricopept 94.5 0.17 3.6E-06 22.3 4.2 27 32-58 3-29 (34)
273 PF07163 Pex26: Pex26 protein; 94.5 1 2.3E-05 31.1 9.7 86 72-157 90-180 (309)
274 PF00637 Clathrin: Region in C 94.5 0.011 2.3E-07 36.3 -0.0 108 36-150 13-140 (143)
275 PF13525 YfiO: Outer membrane 94.4 0.85 1.8E-05 29.9 12.3 63 32-94 7-71 (203)
276 KOG1585 Protein required for f 94.4 1 2.2E-05 30.7 12.4 54 104-158 194-250 (308)
277 PF13374 TPR_10: Tetratricopep 94.2 0.2 4.4E-06 23.1 4.3 26 32-57 4-29 (42)
278 COG0457 NrfG FOG: TPR repeat [ 94.2 0.87 1.9E-05 29.0 17.5 149 6-155 70-222 (291)
279 KOG4077 Cytochrome c oxidase, 94.2 0.7 1.5E-05 27.9 7.1 83 23-107 41-125 (149)
280 PF09613 HrpB1_HrpK: Bacterial 94.2 0.84 1.8E-05 28.8 11.7 110 4-121 19-130 (160)
281 PF07035 Mic1: Colon cancer-as 94.1 0.89 1.9E-05 28.9 10.5 100 49-158 13-112 (167)
282 TIGR02561 HrpB1_HrpK type III 94.0 0.88 1.9E-05 28.3 11.9 52 42-95 22-74 (153)
283 KOG4648 Uncharacterized conser 94.0 1.1 2.4E-05 32.0 8.9 87 38-127 105-192 (536)
284 PF13170 DUF4003: Protein of u 94.0 1.5 3.2E-05 30.8 12.2 96 10-107 118-224 (297)
285 PF13374 TPR_10: Tetratricopep 93.9 0.2 4.4E-06 23.1 4.0 27 101-127 3-29 (42)
286 TIGR02561 HrpB1_HrpK type III 93.8 0.98 2.1E-05 28.1 9.6 89 6-101 21-113 (153)
287 PF04053 Coatomer_WDAD: Coatom 93.7 2.1 4.6E-05 31.8 13.3 102 5-127 271-374 (443)
288 PF07163 Pex26: Pex26 protein; 93.4 1.8 3.9E-05 30.0 9.8 87 2-88 90-181 (309)
289 PF10579 Rapsyn_N: Rapsyn N-te 93.4 0.48 1E-05 26.0 5.0 46 42-87 18-65 (80)
290 TIGR03504 FimV_Cterm FimV C-te 93.3 0.31 6.6E-06 23.5 3.8 21 73-93 7-27 (44)
291 COG3947 Response regulator con 92.8 0.92 2E-05 31.6 6.9 70 32-102 281-355 (361)
292 PF13181 TPR_8: Tetratricopept 92.8 0.3 6.6E-06 21.5 3.4 27 32-58 3-29 (34)
293 TIGR03504 FimV_Cterm FimV C-te 92.6 0.37 8E-06 23.2 3.6 27 105-131 4-30 (44)
294 PF13431 TPR_17: Tetratricopep 92.6 0.29 6.3E-06 22.0 3.1 22 134-155 12-33 (34)
295 KOG1550 Extracellular protein 92.5 3.9 8.4E-05 31.4 14.1 121 5-130 259-394 (552)
296 KOG2114 Vacuolar assembly/sort 92.4 4 8.6E-05 32.7 10.5 80 4-90 377-456 (933)
297 PF13929 mRNA_stabil: mRNA sta 92.4 2.7 5.8E-05 29.3 10.4 112 47-158 145-261 (292)
298 PF00515 TPR_1: Tetratricopept 92.3 0.5 1.1E-05 20.8 4.0 28 101-128 2-29 (34)
299 KOG1920 IkappaB kinase complex 92.2 3.2 6.9E-05 34.5 9.9 105 35-157 944-1048(1265)
300 COG1747 Uncharacterized N-term 92.1 4.2 9.1E-05 30.9 14.2 55 2-59 73-127 (711)
301 COG0735 Fur Fe2+/Zn2+ uptake r 92.0 1.6 3.5E-05 27.0 6.8 63 87-150 8-70 (145)
302 PRK15180 Vi polysaccharide bio 92.0 4.3 9.2E-05 30.7 9.9 118 7-128 301-419 (831)
303 COG0457 NrfG FOG: TPR repeat [ 91.9 2.1 4.6E-05 27.1 16.8 148 6-157 106-258 (291)
304 COG3118 Thioredoxin domain-con 91.9 3.2 6.9E-05 29.0 10.9 120 2-124 175-296 (304)
305 PF07721 TPR_4: Tetratricopept 91.8 0.32 7E-06 20.3 2.6 18 106-123 7-24 (26)
306 KOG2908 26S proteasome regulat 91.8 3.6 7.7E-05 29.4 10.1 88 68-155 78-177 (380)
307 KOG4648 Uncharacterized conser 91.7 2.7 5.9E-05 30.2 8.2 93 3-99 105-197 (536)
308 PF08631 SPO22: Meiosis protei 91.7 3.2 7E-05 28.7 16.2 155 2-158 91-269 (278)
309 KOG2063 Vacuolar assembly/sort 91.5 3.6 7.8E-05 33.3 9.6 116 33-148 507-639 (877)
310 PF07719 TPR_2: Tetratricopept 91.5 0.63 1.4E-05 20.3 4.0 27 102-128 3-29 (34)
311 COG0735 Fur Fe2+/Zn2+ uptake r 91.4 1.8 3.9E-05 26.8 6.6 63 17-80 8-70 (145)
312 PF14669 Asp_Glu_race_2: Putat 91.4 2.8 6E-05 27.5 11.6 56 104-159 136-205 (233)
313 PF11846 DUF3366: Domain of un 90.6 2.3 5E-05 27.5 6.9 52 77-128 120-172 (193)
314 PF13762 MNE1: Mitochondrial s 90.6 2.8 6E-05 26.0 11.6 93 22-114 29-129 (145)
315 COG4455 ImpE Protein of avirul 90.6 3.8 8.2E-05 27.6 8.2 76 32-109 3-81 (273)
316 PF07079 DUF1347: Protein of u 90.5 5.9 0.00013 29.6 14.5 120 6-128 390-523 (549)
317 PRK11639 zinc uptake transcrip 89.9 3.6 7.8E-05 26.2 7.2 61 21-82 17-77 (169)
318 PF08631 SPO22: Meiosis protei 89.7 5.1 0.00011 27.7 15.5 124 5-129 3-150 (278)
319 KOG0550 Molecular chaperone (D 89.6 6.7 0.00015 28.9 12.4 89 5-95 259-351 (486)
320 PF13174 TPR_6: Tetratricopept 89.3 1 2.3E-05 19.3 3.3 24 105-128 5-28 (33)
321 PF11838 ERAP1_C: ERAP1-like C 89.3 5.8 0.00013 27.8 13.7 110 11-124 146-261 (324)
322 KOG1941 Acetylcholine receptor 89.0 6.4 0.00014 28.7 8.3 124 3-126 130-272 (518)
323 PF13762 MNE1: Mitochondrial s 88.9 3.9 8.5E-05 25.4 10.5 98 55-152 27-132 (145)
324 PF11848 DUF3368: Domain of un 88.9 1.7 3.8E-05 21.2 4.8 31 112-142 14-44 (48)
325 PF11848 DUF3368: Domain of un 88.7 1.8 3.9E-05 21.2 4.7 28 79-106 16-43 (48)
326 COG5159 RPN6 26S proteasome re 88.7 6.6 0.00014 27.6 8.9 18 140-157 130-147 (421)
327 cd08819 CARD_MDA5_2 Caspase ac 88.5 3 6.5E-05 23.4 7.0 65 85-155 22-86 (88)
328 PF10579 Rapsyn_N: Rapsyn N-te 88.4 2.5 5.4E-05 23.2 4.8 46 77-122 18-65 (80)
329 PF11817 Foie-gras_1: Foie gra 88.3 5.3 0.00011 27.1 7.5 51 105-155 183-238 (247)
330 KOG0276 Vesicle coat complex C 88.1 11 0.00023 29.4 10.5 100 5-125 647-746 (794)
331 PF11663 Toxin_YhaV: Toxin wit 88.0 0.64 1.4E-05 28.3 2.6 27 81-109 111-137 (140)
332 KOG4567 GTPase-activating prot 87.6 6 0.00013 28.0 7.3 44 50-93 263-306 (370)
333 PF11846 DUF3366: Domain of un 87.4 5.9 0.00013 25.7 7.4 54 41-94 119-173 (193)
334 KOG1130 Predicted G-alpha GTPa 87.4 9.7 0.00021 28.3 8.5 123 5-127 205-342 (639)
335 PF12926 MOZART2: Mitotic-spin 87.3 3.6 7.8E-05 23.0 5.8 42 51-92 29-70 (88)
336 COG3947 Response regulator con 87.3 7.1 0.00015 27.5 7.4 56 70-126 284-339 (361)
337 PRK15180 Vi polysaccharide bio 87.1 11 0.00024 28.6 8.7 89 41-132 300-389 (831)
338 PF06552 TOM20_plant: Plant sp 86.6 4.5 9.9E-05 26.1 5.9 76 11-95 51-137 (186)
339 PRK10564 maltose regulon perip 86.2 3 6.6E-05 29.2 5.4 40 98-137 254-294 (303)
340 PF13934 ELYS: Nuclear pore co 85.7 8.6 0.00019 25.8 9.1 88 33-128 79-168 (226)
341 cd00280 TRFH Telomeric Repeat 85.7 7.7 0.00017 25.3 7.8 20 74-93 120-139 (200)
342 KOG1538 Uncharacterized conser 85.6 10 0.00022 29.9 8.1 52 105-158 778-840 (1081)
343 TIGR02508 type_III_yscG type I 85.5 5.3 0.00011 23.2 8.4 51 39-95 48-98 (115)
344 smart00386 HAT HAT (Half-A-TPR 85.5 2 4.2E-05 18.2 3.9 29 9-38 1-29 (33)
345 PF10366 Vps39_1: Vacuolar sor 85.4 5.5 0.00012 23.3 6.8 27 102-128 41-67 (108)
346 PF09454 Vps23_core: Vps23 cor 85.1 4 8.7E-05 21.5 5.2 49 63-112 6-54 (65)
347 cd08819 CARD_MDA5_2 Caspase ac 85.0 5 0.00011 22.5 8.0 67 48-120 20-86 (88)
348 PF01475 FUR: Ferric uptake re 84.9 1.9 4.1E-05 25.6 3.6 51 30-80 7-57 (120)
349 smart00028 TPR Tetratricopepti 84.8 1.9 4.1E-05 17.5 3.3 24 33-56 4-27 (34)
350 PF14689 SPOB_a: Sensor_kinase 84.7 4 8.7E-05 21.2 4.9 46 11-58 6-51 (62)
351 PF11768 DUF3312: Protein of u 84.7 16 0.00034 28.0 11.3 19 3-21 416-434 (545)
352 PRK10564 maltose regulon perip 84.6 2.9 6.2E-05 29.3 4.7 29 34-62 261-289 (303)
353 cd07153 Fur_like Ferric uptake 84.5 3.8 8.1E-05 24.0 4.7 47 35-81 5-51 (116)
354 PF02847 MA3: MA3 domain; Int 84.3 6.2 0.00013 23.0 6.6 17 4-20 11-27 (113)
355 COG2976 Uncharacterized protei 84.2 9.6 0.00021 25.1 12.6 88 38-130 97-189 (207)
356 KOG4234 TPR repeat-containing 84.1 10 0.00022 25.3 9.6 89 38-129 103-197 (271)
357 PRK11906 transcriptional regul 84.1 16 0.00034 27.5 15.8 143 11-157 274-429 (458)
358 PF14669 Asp_Glu_race_2: Putat 84.1 5.1 0.00011 26.3 5.3 56 70-125 137-206 (233)
359 PF11663 Toxin_YhaV: Toxin wit 84.1 1.2 2.7E-05 27.1 2.4 32 111-144 106-137 (140)
360 PF09797 NatB_MDM20: N-acetylt 84.0 14 0.0003 26.8 8.6 58 11-69 199-256 (365)
361 KOG2063 Vacuolar assembly/sort 83.9 17 0.00036 29.8 9.0 113 1-113 510-639 (877)
362 PF09454 Vps23_core: Vps23 cor 83.7 4.8 0.0001 21.2 4.9 51 98-149 6-56 (65)
363 PRK09462 fur ferric uptake reg 83.5 8.3 0.00018 23.9 7.1 34 116-149 33-66 (148)
364 KOG1920 IkappaB kinase complex 83.4 9 0.0002 32.1 7.4 144 5-158 861-1022(1265)
365 PRK11639 zinc uptake transcrip 82.8 10 0.00022 24.2 7.0 59 57-116 18-76 (169)
366 PF02847 MA3: MA3 domain; Int 82.4 7.5 0.00016 22.6 6.4 62 34-97 6-69 (113)
367 KOG1130 Predicted G-alpha GTPa 82.2 3.8 8.2E-05 30.3 4.6 126 32-157 197-337 (639)
368 COG1747 Uncharacterized N-term 82.1 21 0.00045 27.5 9.3 95 28-127 64-158 (711)
369 PF06552 TOM20_plant: Plant sp 82.1 11 0.00025 24.4 11.0 97 11-112 7-125 (186)
370 KOG2422 Uncharacterized conser 81.8 22 0.00048 27.6 11.1 90 2-92 349-446 (665)
371 PF09477 Type_III_YscG: Bacter 81.6 8.5 0.00018 22.7 9.7 18 111-128 80-97 (116)
372 PF10475 DUF2450: Protein of u 81.4 16 0.00034 25.6 9.2 87 29-120 126-217 (291)
373 cd07153 Fur_like Ferric uptake 81.3 3.3 7.2E-05 24.3 3.6 46 2-47 7-52 (116)
374 COG2976 Uncharacterized protei 81.2 13 0.00028 24.5 10.9 85 72-158 96-182 (207)
375 PRK09462 fur ferric uptake reg 81.0 11 0.00023 23.4 6.7 61 20-81 7-68 (148)
376 cd00280 TRFH Telomeric Repeat 80.8 13 0.00028 24.3 7.8 66 81-149 85-157 (200)
377 PF13934 ELYS: Nuclear pore co 80.7 15 0.00031 24.8 11.3 20 36-55 114-133 (226)
378 PF03745 DUF309: Domain of unk 80.5 6.4 0.00014 20.5 5.2 16 42-57 11-26 (62)
379 COG5159 RPN6 26S proteasome re 80.5 18 0.00038 25.6 10.2 124 3-126 11-151 (421)
380 PF11817 Foie-gras_1: Foie gra 80.3 16 0.00034 24.9 7.7 77 48-126 163-244 (247)
381 KOG0403 Neoplastic transformat 80.2 14 0.0003 27.8 6.9 55 3-58 517-571 (645)
382 KOG4234 TPR repeat-containing 79.7 16 0.00034 24.5 9.8 90 4-95 104-198 (271)
383 PF10155 DUF2363: Uncharacteri 78.5 12 0.00027 22.6 11.1 113 9-127 3-125 (126)
384 KOG0890 Protein kinase of the 78.4 47 0.001 30.5 10.2 117 4-127 1392-1510(2382)
385 PF02259 FAT: FAT domain; Int 78.3 21 0.00046 25.2 14.0 59 100-158 146-207 (352)
386 KOG1586 Protein required for f 78.2 19 0.00041 24.6 11.4 56 79-134 128-188 (288)
387 COG2137 OraA Uncharacterized p 78.1 16 0.00034 23.6 11.1 97 49-149 54-151 (174)
388 PF12796 Ank_2: Ankyrin repeat 77.9 9.2 0.0002 20.9 4.7 13 5-17 4-16 (89)
389 COG4649 Uncharacterized protei 77.9 16 0.00036 23.8 12.2 127 32-159 61-191 (221)
390 COG5108 RPO41 Mitochondrial DN 77.8 21 0.00045 28.4 7.4 75 1-75 34-113 (1117)
391 KOG0991 Replication factor C, 77.2 21 0.00045 24.6 12.1 36 98-134 237-272 (333)
392 PF04910 Tcf25: Transcriptiona 76.7 26 0.00057 25.5 13.2 76 2-77 110-191 (360)
393 COG5108 RPO41 Mitochondrial DN 76.4 30 0.00065 27.6 7.9 75 35-112 33-115 (1117)
394 KOG1538 Uncharacterized conser 75.8 39 0.00084 27.0 10.2 49 4-55 607-657 (1081)
395 TIGR02508 type_III_yscG type I 75.8 13 0.00029 21.6 7.1 86 45-138 20-105 (115)
396 PF01475 FUR: Ferric uptake re 75.2 6.5 0.00014 23.2 3.7 48 104-151 11-58 (120)
397 PF08424 NRDE-2: NRDE-2, neces 75.1 27 0.00059 24.8 12.8 119 11-131 47-185 (321)
398 PF02607 B12-binding_2: B12 bi 74.8 11 0.00024 20.2 4.8 38 42-79 13-50 (79)
399 PRK10941 hypothetical protein; 74.3 26 0.00057 24.3 8.9 78 33-112 184-263 (269)
400 PF10366 Vps39_1: Vacuolar sor 73.7 16 0.00034 21.4 7.4 28 66-93 40-67 (108)
401 KOG0376 Serine-threonine phosp 73.7 16 0.00035 27.4 5.8 105 4-113 13-118 (476)
402 PF10345 Cohesin_load: Cohesin 73.5 42 0.00091 26.3 11.2 83 44-126 153-251 (608)
403 PF03745 DUF309: Domain of unk 73.5 11 0.00024 19.6 5.1 49 75-123 9-62 (62)
404 KOG2908 26S proteasome regulat 73.2 32 0.0007 24.8 10.4 88 34-121 79-178 (380)
405 PF04097 Nic96: Nup93/Nic96; 72.7 29 0.00064 27.2 7.4 88 3-95 266-357 (613)
406 KOG4521 Nuclear pore complex, 72.3 62 0.0013 27.7 13.9 147 4-157 929-1124(1480)
407 PF14853 Fis1_TPR_C: Fis1 C-te 72.3 11 0.00023 18.9 4.5 20 39-58 10-29 (53)
408 KOG1464 COP9 signalosome, subu 71.3 33 0.00072 24.1 12.1 86 69-155 149-251 (440)
409 PF02184 HAT: HAT (Half-A-TPR) 70.7 8.5 0.00018 17.1 2.5 24 10-35 2-25 (32)
410 KOG4567 GTPase-activating prot 70.1 37 0.00081 24.3 6.7 58 85-147 263-320 (370)
411 PF02631 RecX: RecX family; I 69.5 21 0.00045 21.2 10.6 97 47-149 9-106 (121)
412 PF04090 RNA_pol_I_TF: RNA pol 69.3 30 0.00065 22.9 8.9 55 1-56 47-102 (199)
413 KOG0276 Vesicle coat complex C 68.9 56 0.0012 25.8 9.6 80 64-158 665-744 (794)
414 PF09477 Type_III_YscG: Bacter 68.9 21 0.00047 21.1 8.0 87 9-103 20-106 (116)
415 KOG4507 Uncharacterized conser 68.6 57 0.0012 25.8 9.4 83 43-128 620-704 (886)
416 PF07575 Nucleopor_Nup85: Nup8 68.4 17 0.00036 28.1 5.3 66 26-93 401-466 (566)
417 KOG1166 Mitotic checkpoint ser 68.0 39 0.00084 28.2 7.2 71 76-146 89-160 (974)
418 PF14840 DNA_pol3_delt_C: Proc 67.8 7.9 0.00017 23.4 2.8 28 7-34 9-36 (125)
419 PF09868 DUF2095: Uncharacteri 67.5 24 0.00052 21.0 5.2 38 70-108 66-103 (128)
420 PF08424 NRDE-2: NRDE-2, neces 67.2 43 0.00092 23.9 13.8 138 18-158 8-177 (321)
421 PRK14700 recombination factor 67.0 43 0.00092 23.8 12.1 63 70-132 128-198 (300)
422 KOG1585 Protein required for f 65.7 42 0.00092 23.3 11.6 27 31-57 32-58 (308)
423 COG2912 Uncharacterized conser 65.4 43 0.00094 23.3 6.3 55 38-93 189-243 (269)
424 PF12862 Apc5: Anaphase-promot 65.3 22 0.00049 20.0 6.7 20 39-58 50-69 (94)
425 PF09868 DUF2095: Uncharacteri 65.2 27 0.00058 20.8 4.9 35 36-71 67-101 (128)
426 PF02841 GBP_C: Guanylate-bind 65.2 27 0.00059 24.5 5.4 74 50-126 14-88 (297)
427 KOG2066 Vacuolar assembly/sort 65.1 75 0.0016 25.9 12.3 73 3-81 364-439 (846)
428 KOG2300 Uncharacterized conser 64.7 63 0.0014 24.9 11.4 125 5-136 377-522 (629)
429 PF07443 HARP: HepA-related pr 64.6 3.8 8.2E-05 20.8 0.9 33 44-76 6-38 (55)
430 PF09670 Cas_Cas02710: CRISPR- 64.2 55 0.0012 24.0 9.5 121 37-158 138-264 (379)
431 cd08790 DED_DEDD Death Effecto 63.9 14 0.00031 21.2 3.1 59 41-101 35-93 (97)
432 PHA02875 ankyrin repeat protei 63.6 37 0.00081 24.8 6.2 136 15-159 15-156 (413)
433 KOG4507 Uncharacterized conser 63.6 73 0.0016 25.2 8.8 101 8-110 620-720 (886)
434 COG4105 ComL DNA uptake lipopr 63.1 47 0.001 22.9 13.3 126 2-128 78-232 (254)
435 KOG2471 TPR repeat-containing 62.7 36 0.00079 26.1 5.8 105 6-112 251-381 (696)
436 COG0819 TenA Putative transcri 61.8 46 0.001 22.4 9.8 24 25-48 104-127 (218)
437 PRK09857 putative transposase; 61.6 54 0.0012 23.1 8.6 67 68-135 209-275 (292)
438 TIGR03236 dnd_assoc_1 dnd syst 61.5 28 0.00061 25.3 4.9 33 85-117 316-348 (363)
439 PF07064 RIC1: RIC1; InterPro 59.8 55 0.0012 22.6 13.2 144 2-158 89-243 (258)
440 COG4785 NlpI Lipoprotein NlpI, 59.8 53 0.0012 22.4 7.5 29 66-94 100-128 (297)
441 PRK09857 putative transposase; 59.6 59 0.0013 22.9 8.7 48 104-152 210-257 (292)
442 KOG1258 mRNA processing protei 59.6 83 0.0018 24.6 12.2 123 29-155 296-420 (577)
443 PF08870 DUF1832: Domain of un 59.6 35 0.00076 20.2 5.8 33 12-44 6-40 (113)
444 KOG4642 Chaperone-dependent E3 59.4 56 0.0012 22.6 10.7 117 5-125 20-142 (284)
445 PRK13342 recombination factor 59.2 71 0.0015 23.7 15.9 102 11-114 153-279 (413)
446 PF11838 ERAP1_C: ERAP1-like C 59.2 59 0.0013 22.8 13.7 106 34-146 133-246 (324)
447 PF08311 Mad3_BUB1_I: Mad3/BUB 58.7 38 0.00082 20.4 8.4 43 83-125 81-124 (126)
448 KOG1586 Protein required for f 58.2 59 0.0013 22.4 10.4 14 7-20 26-39 (288)
449 KOG0687 26S proteasome regulat 58.2 69 0.0015 23.2 11.3 94 32-127 106-208 (393)
450 COG5210 GTPase-activating prot 57.7 54 0.0012 25.0 6.2 59 51-109 363-421 (496)
451 COG4003 Uncharacterized protei 57.5 32 0.00069 19.1 4.7 32 70-102 36-67 (98)
452 KOG1941 Acetylcholine receptor 56.5 80 0.0017 23.4 8.3 127 32-158 124-269 (518)
453 TIGR03581 EF_0839 conserved hy 56.4 60 0.0013 21.9 5.6 82 46-127 137-235 (236)
454 TIGR03362 VI_chp_7 type VI sec 56.0 49 0.0011 23.5 5.4 57 72-128 220-278 (301)
455 KOG1839 Uncharacterized protei 55.8 1.4E+02 0.003 25.9 10.6 150 6-156 943-1120(1236)
456 smart00164 TBC Domain in Tre-2 55.6 53 0.0012 21.1 5.8 82 10-95 108-197 (199)
457 KOG1166 Mitotic checkpoint ser 55.1 1.3E+02 0.0028 25.4 8.1 73 42-114 90-163 (974)
458 PF10963 DUF2765: Protein of u 54.5 28 0.00061 19.4 3.2 32 26-57 12-43 (83)
459 COG4785 NlpI Lipoprotein NlpI, 54.2 68 0.0015 21.9 11.8 49 9-59 79-128 (297)
460 PF04348 LppC: LppC putative l 53.8 4.3 9.3E-05 31.1 0.0 83 3-85 32-118 (536)
461 COG2405 Predicted nucleic acid 53.8 43 0.00094 20.8 4.2 40 106-145 115-154 (157)
462 KOG1308 Hsp70-interacting prot 53.7 15 0.00033 26.4 2.6 90 6-98 125-215 (377)
463 KOG2582 COP9 signalosome, subu 53.6 88 0.0019 23.1 9.1 123 5-130 193-346 (422)
464 COG2256 MGS1 ATPase related to 53.6 93 0.002 23.3 13.0 51 64-114 245-298 (436)
465 PF12926 MOZART2: Mitotic-spin 53.3 40 0.00087 19.0 8.1 44 86-129 29-72 (88)
466 smart00544 MA3 Domain in DAP-5 53.0 44 0.00095 19.3 10.6 60 34-95 6-67 (113)
467 PF00244 14-3-3: 14-3-3 protei 52.9 70 0.0015 21.7 6.9 59 36-94 7-66 (236)
468 PRK13341 recombination factor 52.7 1.3E+02 0.0027 24.5 16.1 88 25-115 192-308 (725)
469 COG0819 TenA Putative transcri 52.3 70 0.0015 21.5 9.0 95 59-153 103-208 (218)
470 PF05944 Phage_term_smal: Phag 52.3 53 0.0012 20.1 8.0 28 69-96 52-79 (132)
471 COG2405 Predicted nucleic acid 51.8 45 0.00097 20.8 4.0 45 65-110 110-154 (157)
472 PF07575 Nucleopor_Nup85: Nup8 51.6 1.1E+02 0.0025 23.8 7.4 62 64-127 404-465 (566)
473 KOG0376 Serine-threonine phosp 51.2 85 0.0018 23.9 6.1 107 37-149 11-119 (476)
474 KOG0889 Histone acetyltransfer 50.9 2.3E+02 0.005 27.9 9.3 19 4-22 2491-2509(3550)
475 PRK14135 recX recombination re 50.2 81 0.0018 21.6 11.6 48 49-97 91-138 (263)
476 PF04190 DUF410: Protein of un 49.8 84 0.0018 21.7 13.6 25 99-123 89-113 (260)
477 PRK14136 recX recombination re 49.7 94 0.002 22.2 13.6 97 47-150 194-290 (309)
478 COG2987 HutU Urocanate hydrata 49.6 28 0.0006 26.2 3.4 47 8-67 216-262 (561)
479 KOG1464 COP9 signalosome, subu 49.5 92 0.002 22.1 12.1 146 7-152 39-208 (440)
480 COG2909 MalT ATP-dependent tra 49.4 1.5E+02 0.0033 24.6 13.2 54 6-59 469-526 (894)
481 PF09986 DUF2225: Uncharacteri 49.4 77 0.0017 21.2 8.0 63 81-143 141-208 (214)
482 PF08311 Mad3_BUB1_I: Mad3/BUB 49.2 57 0.0012 19.6 8.7 43 48-90 81-124 (126)
483 PF04762 IKI3: IKI3 family; I 48.9 1.6E+02 0.0035 24.7 9.5 124 2-129 701-843 (928)
484 KOG0890 Protein kinase of the 48.7 2.2E+02 0.0049 26.7 8.8 111 35-152 1388-1500(2382)
485 cd08326 CARD_CASP9 Caspase act 48.6 47 0.001 18.5 7.2 31 81-115 46-76 (84)
486 PRK00847 thyX FAD-dependent th 48.4 80 0.0017 21.1 5.5 16 47-62 131-146 (217)
487 TIGR01529 argR_whole arginine 48.2 48 0.001 20.6 4.0 37 37-73 7-43 (146)
488 COG5593 Nucleic-acid-binding p 48.2 86 0.0019 24.4 5.8 63 3-65 92-156 (821)
489 PF11123 DNA_Packaging_2: DNA 48.2 45 0.00098 18.2 3.7 53 80-144 12-64 (82)
490 PF04348 LppC: LppC putative l 47.9 6.1 0.00013 30.3 0.0 88 35-122 29-120 (536)
491 smart00804 TAP_C C-terminal do 47.5 34 0.00073 17.9 2.7 22 42-63 37-58 (63)
492 PF10475 DUF2450: Protein of u 47.2 98 0.0021 21.7 8.8 107 39-156 107-218 (291)
493 PF00244 14-3-3: 14-3-3 protei 47.0 90 0.0019 21.2 6.8 155 2-157 8-191 (236)
494 TIGR03581 EF_0839 conserved hy 46.9 89 0.0019 21.1 6.3 82 10-92 136-235 (236)
495 PRK09687 putative lyase; Provi 46.8 99 0.0021 21.6 15.8 28 29-57 141-168 (280)
496 PRK14958 DNA polymerase III su 46.4 1.4E+02 0.0029 23.1 11.9 76 21-99 191-279 (509)
497 KOG0403 Neoplastic transformat 46.0 1.3E+02 0.0029 23.0 7.1 58 69-127 513-570 (645)
498 PF15297 CKAP2_C: Cytoskeleton 45.3 1.2E+02 0.0026 22.2 7.6 62 12-75 120-185 (353)
499 PF08461 HTH_12: Ribonuclease 45.2 47 0.001 17.4 4.0 40 40-79 7-46 (66)
500 KOG0989 Replication factor C, 44.6 1.2E+02 0.0026 21.9 8.8 90 56-148 201-302 (346)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-34 Score=219.55 Aligned_cols=157 Identities=16% Similarity=0.191 Sum_probs=100.3
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
|++|++.|++++|.++|+.|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++|.+++++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|...+..||..+|+.+|.+|++.|++++|.++|
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666665566666666666666666666666666554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.2e-34 Score=218.35 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=83.4
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
|++|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.|++
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHH--cCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHR--KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++|.++|.+|.. .|+.||..+|+++|.+|++.|++++|.++|+.|...+++|+..+|+.+|.+|++.|++++|.++|
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555555555543 34445555555555555555555555555555555555555555555555555555555555444
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-32 Score=204.39 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=89.5
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
||.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|+
T Consensus 296 li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC
Confidence 35667777777777777777777777777777777777766666666666666666666655555555555555544444
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|...|+.||..||+.++.+|++.|++++|.++|
T Consensus 376 ~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 376 MEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 444444444442 13444555555555555555555555555555555555555555555555555555555444
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.98 E-value=2.1e-31 Score=200.23 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=121.8
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
++++|++.|++++|.+++..|.+.|+.||..+||+|+++|++.|++++|.++|++|.+ ||..+|+.|+.+|++.|+
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCC
Confidence 3677788888888888888888888777888888888888888888888888887754 677788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY-SKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.. .++.|+..+|+.++++|++.|++++|.+++
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 888888888888778888888888888888888888888888887764 577777778888888888888888887765
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=3.5e-29 Score=191.92 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=73.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
++|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|+.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 34444444444444444442 23444444444555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+.+++..|.+.|..||..+|+.|+.+|++.|++++|.++|+.|.. ||..+|+.++.+|++.|++++|.++|
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555555555555555555555555555555555555432 34445555555555555555555444
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=4.1e-29 Score=191.55 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=100.4
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-----------------
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP----------------- 63 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~----------------- 63 (159)
||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..|.+.|+.|
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 456677777777777777777666666665555555555555544444444444444444444
Q ss_pred --------------ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 64 --------------DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 64 --------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
|..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+...
T Consensus 339 ~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 445555555555555556666666666666666666666666666666666666666666666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 130 KRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
|..|+..+|+.++.+|++.|++++|.++|+
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666667777777777777777777777663
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.74 E-value=1.1e-17 Score=84.72 Aligned_cols=50 Identities=34% Similarity=0.765 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc
Q 039637 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK 77 (159)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 77 (159)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888874
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.67 E-value=2.8e-16 Score=79.54 Aligned_cols=50 Identities=30% Similarity=0.503 Sum_probs=30.2
Q ss_pred CChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 039637 63 PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (159)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (159)
||..+|++++++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 55566666666666666666666666666666666666666666665543
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.66 E-value=1.9e-14 Score=102.23 Aligned_cols=151 Identities=10% Similarity=0.022 Sum_probs=61.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh----hhHHHHHHHHHccC
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY----NTFHILIKYFCKEK 79 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~ 79 (159)
.|.+.|++++|.++|+.+.+..+ ++..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 34444555555555555443322 23444444555555555555555555444443211110 11223333344444
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
++++|...++++.+.. +.+...+..+...|.+.|++++|.++|+++...+......++..+...|.+.|++++|..
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444322 112233333444444444444444444444332111112233344444444444444443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.66 E-value=2.2e-14 Score=101.90 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=107.7
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFC 76 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~ 76 (159)
+..+.+.|++++|.+.++.+.+.++.++. ..+..+...+.+.|++++|...|+++.+.. |+ ...+..+...+.
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~ 225 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLAL 225 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHH
Confidence 45677788888888888888766544321 235566677778888888888888877642 33 456666777788
Q ss_pred ccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 77 KEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++... .|+...+..+...+.+.|++++|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 88888888888888776532222456677778888888888888888877754 3444555777788888888888877
Q ss_pred hh
Q 039637 157 VV 158 (159)
Q Consensus 157 ~~ 158 (159)
++
T Consensus 304 ~l 305 (389)
T PRK11788 304 LL 305 (389)
T ss_pred HH
Confidence 65
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.53 E-value=3.4e-12 Score=98.44 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=86.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..|.+.|++++|.++++.+.+..+ .+...|..+..++.+.|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 345556666666666666654433 255666666666666666666666666665532 123445555666666666666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|..+++++.+.. +.+..++..+...+...|++++|.++++.+.... +.+...+..+...+.+.|++++|.+.|
T Consensus 653 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 653 KAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666665532 2334555555555666666666666665555432 334445555555566666666655544
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.53 E-value=3.1e-12 Score=98.66 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=110.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+.+.|++++|.+.++.+.+..+. ++..++.+...|.+.|++++|...|+++.+.. +++..++..+...+...|+ .
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-H
Confidence 3455666666666666666655443 66677777777777777777777777777643 2445666777777777777 6
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
+|+.++++..... +-++.++..+...+...|++++|..+++++...+.. +..++..+...+.+.|+.++|.++++
T Consensus 821 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 821 RALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777777776642 234556667788888899999999999999875543 78889999999999999999998763
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=2.5e-11 Score=79.83 Aligned_cols=153 Identities=11% Similarity=0.057 Sum_probs=109.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~ 116 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYE 116 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHH
Confidence 4567778888888888887765443 56777788888888888888888888877643 233456666777788888888
Q ss_pred HHHHHHHHHHHcCCC-CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQ-PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|.+.+.+..+.... .....+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888887764322 234456667777788888888888888776532 334556777778888888888877655
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=4.2e-12 Score=88.59 Aligned_cols=153 Identities=19% Similarity=0.203 Sum_probs=113.1
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
||.+.|+--..++|.+++++-.+...+.+..+||.+|.+-.=.. -.++..+|.+..+.||..|||+++++..+.|+
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 46677777788888888888877777778888888887644222 26778888888888999999999988888887
Q ss_pred HHH----HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHH-HHHHHHHHHHhC--C------CCCCHHHHHHHHHHHHh
Q 039637 81 YML----AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS-EALSVYNMLRYS--K------RSMCKALHEKILHILIS 147 (159)
Q Consensus 81 ~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~--~------~~~~~~~~~~l~~~~~~ 147 (159)
++. |.+++.+|++-|+.|+..+|..+|..+++.++.. .|..++.++... | .+-+...|...+..|.+
T Consensus 289 F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~ 368 (625)
T KOG4422|consen 289 FEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSS 368 (625)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHH
Confidence 764 4567788888888888888888888888887764 355566666532 2 22334567777777778
Q ss_pred cCcHHHHhhh
Q 039637 148 GKLLKDAYIV 157 (159)
Q Consensus 148 ~g~~~~A~~~ 157 (159)
..+.+.|+.+
T Consensus 369 l~d~~LA~~v 378 (625)
T KOG4422|consen 369 LRDLELAYQV 378 (625)
T ss_pred hhhHHHHHHH
Confidence 8877777765
No 15
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=4.6e-12 Score=86.48 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=112.8
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccC
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKY-DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEK 79 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~ 79 (159)
+..+.+.++++++.++++.+.+.. .+.+...|..+...+.+.|+.++|+..+++..+. .|+ ......++..+...|
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCC
Confidence 456778899999999999987544 3457888999999999999999999999999984 575 677888999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+.+++.+++....+.. +.|+..+..+..+|...|+.++|..+|++.... .+.|..+...+..++...|+.++|.++.
T Consensus 195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT------------
T ss_pred ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 9999999998888764 456678889999999999999999999998763 3457888889999999999999998875
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=7e-12 Score=87.51 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
.+..++.+||.+.|+-...+.|.+++++-.+...+.+..+||.+|.+-+-.. ..++..+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 3677899999999999999999999999999888999999999998755433 268889999999999999999999
Q ss_pred HHHHccCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHH
Q 039637 108 FHLGKMRAHSEA----LSVYNMLRYSKRSMCKALHEKILHILISGKLLK 152 (159)
Q Consensus 108 ~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (159)
++..+.|+++.| .+++.+|++-|+.|+..+|..+|..+++.++..
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 999999988755 457789999999999999999999988887753
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.2e-10 Score=76.56 Aligned_cols=153 Identities=11% Similarity=-0.049 Sum_probs=126.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~ 81 (159)
..+...|++++|.+.++...+..+. +...+..+...+...|++++|...+.+.......| ....+..+..++...|++
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF 151 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH
Confidence 4677889999999999999877654 67788889999999999999999999998753222 345667778889999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++|...+.+..+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.
T Consensus 152 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 152 DKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998764 335668888999999999999999999988865 4456677778889999999999998753
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.39 E-value=1.9e-10 Score=86.54 Aligned_cols=151 Identities=9% Similarity=-0.063 Sum_probs=121.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 83 (159)
.+...|++++|+..|+...+..+. +...|..+...+...|++++|...|++..+.. ..+...|..+...+...|++++
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 456678999999999888876543 56788888888889999999999999887742 2246778888888889999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
|...|++.++.. +.+...+..+...+.+.|++++|...|+..... .+.+...+..+...+...|++++|.+.|
T Consensus 418 A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 418 AGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred HHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999888764 335667778888888999999999999988753 3445778888889999999999998765
No 19
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=2.9e-10 Score=84.50 Aligned_cols=147 Identities=10% Similarity=-0.075 Sum_probs=105.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHH
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYR 86 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~ 86 (159)
.+++++|...+++..+.++. +...|..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|..
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred chHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34578888888888877665 7778888888888888888888888888874 454 4566777778888888888888
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+++..+.... ++..+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+
T Consensus 394 ~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~ 464 (553)
T PRK12370 394 TINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT 464 (553)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888775422 222333344456667888888888887765332324445667777788888888887765
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.33 E-value=5.1e-10 Score=84.65 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=100.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHhHhcCCCCC-hhhHHHHHHHHHcc
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMES----VMHVMRKLDELAISPD-YNTFHILIKYFCKE 78 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~ 78 (159)
.+.+.|++++|.+.|+...+..+. +...+..+...+.+.|++++ |...|++..+. .|+ ...+..+...+...
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHC
Confidence 455667777777777777665543 56667777777777777764 67777777763 344 45666777777777
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
|++++|...+++..+.. +.+...+..+...+.+.|++++|...++.+...... +...+..+...+...|+.++|...|
T Consensus 298 g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 298 GQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888887777653 234556666777777888888888888777653211 2223344556777788888887765
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.32 E-value=5.2e-10 Score=84.58 Aligned_cols=150 Identities=7% Similarity=-0.070 Sum_probs=83.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~ 82 (159)
+....|++++|.+.|+.+.+..+. +...+..+...+.+.|++++|...+.+..+. .|+ ...+..+...+...|+++
T Consensus 85 ~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 85 SPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred hHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChH
Confidence 344566777777777766665444 5556666666666677777777777666652 343 445556666666666666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|...+..+..... .+...+..+ ..+...|++++|...++.+......++...+..+...+.+.|++++|...+
T Consensus 162 eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 162 QAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666554321 122222222 235555666666666665544322223333334445555666666655443
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.30 E-value=1.3e-09 Score=85.24 Aligned_cols=149 Identities=9% Similarity=-0.023 Sum_probs=84.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
+.+.|++++|.+.|+...+..+. +...+..+.....+.|++++|...+.+..+ +.|+...+..+..++.+.|++++|
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34455555555555555543322 222222333333344666666666666655 345555666666666666666666
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+..+++..+.. +.+...++.+...+...|+.++|...+++.... .|-+...+..+..++...|++++|...|
T Consensus 629 ~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 629 VSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666543 234455566666666667777777766666542 2334556666667777777777666554
No 23
>PF12854 PPR_1: PPR repeat
Probab=99.29 E-value=6.6e-12 Score=57.81 Aligned_cols=32 Identities=22% Similarity=0.541 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 039637 25 YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKL 56 (159)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 56 (159)
|+.||..+||+||++||+.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=1.7e-09 Score=80.49 Aligned_cols=147 Identities=10% Similarity=-0.076 Sum_probs=112.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh-hHHHHHHHHHccChHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKMYM 82 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~ 82 (159)
.+...|++++|...|++..+.++. +...|..+...+...|++++|...+++..+. .|+.. .+..++..+...|+++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHH
Confidence 566789999999999999987765 6778899999999999999999999999884 56543 3334455566789999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
+|...+.+..+...+-++..+..+..++...|+.++|...++++... .+.+....+.+...|+..|+ .|..
T Consensus 424 eA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~--~a~~ 494 (553)
T PRK12370 424 DAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNSE--RALP 494 (553)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccHH--HHHH
Confidence 99999999886543234556777888899999999999999987653 22234445566667777774 4444
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.24 E-value=2.7e-09 Score=80.39 Aligned_cols=148 Identities=9% Similarity=-0.073 Sum_probs=124.5
Q ss_pred cCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHH
Q 039637 8 SGCFEETKQLAGDFEAKY-DKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 84 (159)
.+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 367999999999988764 223 4567889999999999999999999999874 565 56788888889999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
...+++..+.. +.++.++..+...+...|++++|...|++..... +.+...+..+...+.+.|++++|...|+
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999998764 3467889999999999999999999999988643 4456778888999999999999998763
No 26
>PF12854 PPR_1: PPR repeat
Probab=99.24 E-value=1.5e-11 Score=56.64 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=17.4
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 039637 95 GHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (159)
Q Consensus 95 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (159)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.21 E-value=1.9e-10 Score=78.62 Aligned_cols=149 Identities=19% Similarity=0.131 Sum_probs=87.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcC-CCCChhhHHHHHHHHHccChHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
...+++++|.+++...-+. .+++..+..++..+.+.++++++.++++...+.. ..++...|..+...+.+.|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5678888888887665443 2466667788888888899999988888876532 245667777888888888999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++.+++.++.. +-|+.....++..+...|+.+++..+++...... +.|...+..+..+|...|+.++|...|
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccc
Confidence 99998888763 2357778888888888899988888888776543 445556778888899999999888776
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.21 E-value=8.2e-09 Score=73.94 Aligned_cols=152 Identities=13% Similarity=-0.005 Sum_probs=95.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC--------------------
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-------------------- 63 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-------------------- 63 (159)
.+...|++++|.+.++.+.+..+. ++.....+...|.+.|++++|.+++..+.+.+..+
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776654 66777777777777777777777777766543321
Q ss_pred ---------------------ChhhHHHHHHHHHccChHHHHHHHHHHHHHcC---------------------------
Q 039637 64 ---------------------DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG--------------------------- 95 (159)
Q Consensus 64 ---------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--------------------------- 95 (159)
+......+...+...|+.++|.+.+.+..+..
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHH
Confidence 11122233444555566666666655554421
Q ss_pred ---CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 96 ---HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 96 ---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+-|+....++...+.+.+++++|...|+...+. .|+..++..+...+.+.|+.++|.+.+
T Consensus 321 lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 321 IKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1223445556667777777777777777777643 466666677777777777777776654
No 29
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=1e-08 Score=66.41 Aligned_cols=152 Identities=9% Similarity=0.006 Sum_probs=127.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 81 (159)
-.|.+.|+...|.+-+++..+..+. +..+|..+...|-+.|+.+.|.+-|++..+ +.|+ -...|.--..+|.+|++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCCh
Confidence 3688999999999999999988766 788999999999999999999999999888 4565 56777888889999999
Q ss_pred HHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++|...|++......-+ ...+|..+.-+..+.|+.+.|...|++........ ..+...+.....+.|++..|.-++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF-PPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHHhcccchHHHHHH
Confidence 99999999998764333 34588889999999999999999999888754332 345578889999999988887654
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.17 E-value=1.1e-08 Score=80.21 Aligned_cols=147 Identities=6% Similarity=-0.092 Sum_probs=115.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHccChHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYML 83 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~ 83 (159)
+.+.|++++|...|+.+... .|+...+..+..++.+.|++++|...+.+..+.. |+. ..+..+.....+.|++++
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHH
Confidence 35789999999999987654 3344556677788889999999999999988753 433 333334444556699999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
|...+++..+. .|+...+..+...+.+.|+.++|...+++.... .|.+...+..+...+...|+.++|...|
T Consensus 595 Al~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 595 ALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL-EPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999875 467888899999999999999999999998864 3446678888888999999999998876
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.15 E-value=2.4e-08 Score=71.81 Aligned_cols=154 Identities=10% Similarity=-0.005 Sum_probs=94.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC--------------------
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-------------------- 63 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-------------------- 63 (159)
.+...|+++.|.+.++.+.+..|. +..++..+...+.+.|++++|.+++..+.+.+..+
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777766554 56667777777777777777777666666543221
Q ss_pred ---------------------ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCC--------------------------
Q 039637 64 ---------------------DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGH-------------------------- 96 (159)
Q Consensus 64 ---------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-------------------------- 96 (159)
+...+..+...+...|+.++|.+.+++..+...
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH
Confidence 222223333444555666666666555544210
Q ss_pred --------CC-cH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 97 --------QP-EE--ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 97 --------~~-~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.| |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++
T Consensus 321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12 23 3445666777777777777777775444444567667777777777777777777665
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1e-08 Score=72.53 Aligned_cols=152 Identities=13% Similarity=0.047 Sum_probs=133.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
+-|+-.++.++|...|++..+.++. ....|+.+..-|....+.+.|.+-++..++.. +.|-..|-.|-.+|.-.+.+.
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchH
Confidence 4567788999999999999988766 78899999999999999999999999998842 346789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
-|+-+|++..+-. +-|+..|.+|..+|.+.+++++|++.|......+.. +...+..+...|-+-++..+|...|
T Consensus 416 YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 416 YALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999988742 348899999999999999999999999988876544 5678899999999999999998765
No 33
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.14 E-value=1e-09 Score=80.20 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=72.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 83 (159)
|-..|+++.|+..|++..+..+. =+..|+.|.+++-..|+..+|.+.|++... +.|+ ..+.+.|-+.+...|.+++
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchH
Confidence 33445555555555555443222 234555555555555555555555555544 2333 3444455555555555555
Q ss_pred HHHHHHHHHHcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHhhh
Q 039637 84 AYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC-KALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
|..+|...++- .|+ ...++.|...|-++|++++|...+++... +.|+ ...|+.+-..|-..|+.+.|...
T Consensus 373 A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 373 ATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred HHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 55555544432 222 23445555555555555555555555442 2222 33455555555555555555443
No 34
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=5.7e-08 Score=67.00 Aligned_cols=118 Identities=9% Similarity=0.037 Sum_probs=89.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~ 82 (159)
.|.+.|++++|...|+...+..+. +...|+.+...+...|++++|...|++..+ +.|+ ..+|..+..++...|+++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHH
Confidence 467789999999999998887665 788999999999999999999999999887 4565 567777888888889999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (159)
+|.+.++...+.. |+..........+...++.++|...|++.
T Consensus 150 eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 150 LAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999888753 43222222222344567788888887543
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.13 E-value=2.3e-08 Score=77.07 Aligned_cols=83 Identities=6% Similarity=-0.134 Sum_probs=35.4
Q ss_pred HHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHH
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLK 152 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (159)
..+...|++++|++.++++.... +.+...+..+...+...|++++|++.+++..... |-+...+......+.+.|+++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHH
Confidence 33444444444444444444321 2233344444444444444444444444444321 222333334444444444454
Q ss_pred HHhhh
Q 039637 153 DAYIV 157 (159)
Q Consensus 153 ~A~~~ 157 (159)
+|..+
T Consensus 445 ~A~~~ 449 (765)
T PRK10049 445 QMDVL 449 (765)
T ss_pred HHHHH
Confidence 44443
No 36
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.10 E-value=2.1e-08 Score=80.46 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=45.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 59 (159)
.+...|++++|.+.|++..+..+. +...+..+...|.+.|++++|...+++..+.
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 456779999999999998877665 6778888888999999999999999888763
No 37
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.10 E-value=4.2e-08 Score=65.35 Aligned_cols=153 Identities=12% Similarity=0.078 Sum_probs=115.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh----hHHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDK-YD-VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN----TFHILIKYFC 76 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~ 76 (159)
..+.+.|++++|...|+.+.+..+. |. ..++..+..++.+.|++++|...++++.+. .|+.. ++..+-.++.
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~g~~~~ 118 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAYYLRGLSNY 118 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHHHHHHHHHH
Confidence 4577899999999999999876543 11 246788899999999999999999999874 34322 3444555555
Q ss_pred cc--------ChHHHHHHHHHHHHHcCCCCcHHHH-----------------HHHHHHHHccCCHHHHHHHHHHHHhCC-
Q 039637 77 KE--------KMYMLAYRTMVDMHRKGHQPEEELC-----------------SSLIFHLGKMRAHSEALSVYNMLRYSK- 130 (159)
Q Consensus 77 ~~--------~~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~~~~~~- 130 (159)
.. |++++|.+.++.+.+.... +.... -.+...|.+.|++++|...++......
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 119 NQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence 44 7899999999999875321 22221 134566788899999999999887642
Q ss_pred -CCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 131 -RSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 131 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+.....+..+...+.+.|+.++|...+
T Consensus 198 ~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 198 DTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2334678889999999999999998875
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.09 E-value=2.5e-08 Score=80.06 Aligned_cols=150 Identities=9% Similarity=-0.008 Sum_probs=120.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
+.+...|+.++|.++++ .. +.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|+++
T Consensus 581 ~~l~~~G~~~eA~~~l~----~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLR----QQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHCCCHHHHHHHHH----hC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 45778899999999986 12 3466778889999999999999999999999853 234678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR--SM---CKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
+|++.++...+.. +.+..+...+...+.+.|+.++|.++++.+..... +| +...+..+...+.+.|+.++|...
T Consensus 655 eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 655 AARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999887643 23556677788889999999999999999876432 22 224566678889999999999987
Q ss_pred hC
Q 039637 158 VK 159 (159)
Q Consensus 158 ~~ 159 (159)
|+
T Consensus 734 y~ 735 (1157)
T PRK11447 734 YK 735 (1157)
T ss_pred HH
Confidence 63
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.08 E-value=7.1e-08 Score=74.48 Aligned_cols=151 Identities=11% Similarity=0.080 Sum_probs=124.0
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccCh
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKM 80 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 80 (159)
+......|+.++|+++|....... +.+...+..+..++.+.|++++|.++|++..+. .|+ ...+..+...+...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 356678899999999999987633 336667999999999999999999999998874 454 5667778888999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+++|...+++..+.. +.+.. +..+...+...|+.++|...++++... .|.+...+..+...+...|..++|...+
T Consensus 99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR-APQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999998863 34556 888889999999999999999999874 3345666677888888899988887654
No 40
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.04 E-value=7.3e-08 Score=62.60 Aligned_cols=133 Identities=9% Similarity=-0.033 Sum_probs=103.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHH-HHccCh--HHH
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKY-FCKEKM--YML 83 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~-~~~~~~--~~~ 83 (159)
.++.+++...++...+.++. |...|..+...|...|++++|...|++..+. .| +...+..+..+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 45567777777777766665 8899999999999999999999999999884 45 45667777766 466676 599
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (159)
|.+++++..+.. +-++.++..+...+.+.|++++|...|+++.+. .+|+..-+ .+|....
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~-~~i~~i~ 188 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT-QLVESIN 188 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH-HHHHHHH
Confidence 999999999875 347788889999999999999999999999864 34444333 3445433
No 41
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.02 E-value=2.2e-08 Score=73.43 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=67.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 84 (159)
-..|++.+|.+.|+......+. -..+.+.|.++|.+.|.+++|..+|....+ +.|. ...++.|...|-.+|++++|
T Consensus 331 kd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 331 KDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHH
Confidence 3345555555555544433222 233444555555555555555555554444 3333 23444555555555555555
Q ss_pred HHHHHHHHHcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 85 YRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
+..+++.++ +.|+ ...++.+...|-..|+++.|.+.+.+....+.. -...++.+...|-.+|++.+|+.
T Consensus 408 i~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 408 IMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred HHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHH
Confidence 555555443 2232 234445555555555555555555544432211 13344555555555555555544
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.00 E-value=2e-07 Score=72.04 Aligned_cols=154 Identities=16% Similarity=0.026 Sum_probs=79.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcC-----CCCChhhHHHHHHHHHcc
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA-----ISPDYNTFHILIKYFCKE 78 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~ 78 (159)
++...|++.++.+.|+.+...+.+....+-..+.++|...+++++|+.+|..+.... ..++......|..++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 445555666666666666655544344455566666666666666666666554432 111222234555566666
Q ss_pred ChHHHHHHHHHHHHHcCC-----------CCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039637 79 KMYMLAYRTMVDMHRKGH-----------QPE---EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~-----------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (159)
+++++|..+++++.+... .|+ ...+..++..+.-.|+..+|++.++++.. .-|-|......+...
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~-~aP~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS-TAPANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Confidence 666666666666554210 111 12223344445555666666666665543 334455555555555
Q ss_pred HHhcCcHHHHhhhh
Q 039637 145 LISGKLLKDAYIVV 158 (159)
Q Consensus 145 ~~~~g~~~~A~~~~ 158 (159)
+...|...+|...+
T Consensus 460 ~~~Rg~p~~A~~~~ 473 (822)
T PRK14574 460 YLARDLPRKAEQEL 473 (822)
T ss_pred HHhcCCHHHHHHHH
Confidence 55666555555543
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.97 E-value=2.1e-07 Score=66.80 Aligned_cols=84 Identities=10% Similarity=0.010 Sum_probs=36.9
Q ss_pred HhcCChHHHHHHHHHhHhcCCCCChhhHH--HHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHH
Q 039637 41 CRTGDMESVMHVMRKLDELAISPDYNTFH--ILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 118 (159)
.+.|+++.+.+.+.++.+ ..|+..... .....+...|+++.|...++++.+.. +-++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 444555555555555443 223332222 11233444455555555555444432 1233444444555555555555
Q ss_pred HHHHHHHHH
Q 039637 119 ALSVYNMLR 127 (159)
Q Consensus 119 a~~~~~~~~ 127 (159)
|..++..+.
T Consensus 206 a~~~l~~l~ 214 (398)
T PRK10747 206 LLDILPSMA 214 (398)
T ss_pred HHHHHHHHH
Confidence 554444444
No 44
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.95 E-value=1.8e-09 Score=49.92 Aligned_cols=33 Identities=24% Similarity=0.619 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPD 64 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 64 (159)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577888888888888888888888888887776
No 45
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.94 E-value=2.9e-07 Score=69.94 Aligned_cols=129 Identities=10% Similarity=0.004 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHH
Q 039637 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSS 105 (159)
Q Consensus 27 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 105 (159)
..++..+-.|..+..+.|.+++|+.+++...+ +.|+ ......+..++.+.+++++|+...++.+... +-+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34677888888888899999999999998888 5676 4556677888888899999999999888764 235566677
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 106 LIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
+..++.+.|++++|..+|+++.. ..+-+..++...-..+-+.|+.++|...|+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~ 212 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQ 212 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 78888888999999999998887 334457788888889999999998887663
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=2e-07 Score=63.47 Aligned_cols=153 Identities=9% Similarity=0.008 Sum_probs=96.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC----hhhHHHHHHHHHccC
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCKEK 79 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~ 79 (159)
-|...|-+++|..+|..+.+.+. .-......|+..|-...+|++|+++-.++.+.+-.+. ...|.-+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 35566666777777766665432 2455666677777777777777777766666443222 122333444444456
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+.+.|..++.+..+... -.+..--.+.+.....|+++.|.+.++.+.+.+...-..+...+..+|...|+.++...++
T Consensus 195 ~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 195 DVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 66666666666665431 2333334566677777888888888888877766666677788888888888888776554
No 47
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.92 E-value=3.6e-07 Score=70.64 Aligned_cols=147 Identities=12% Similarity=-0.016 Sum_probs=100.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhh-HHHH--HHHHHccCh
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT-FHIL--IKYFCKEKM 80 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l--l~~~~~~~~ 80 (159)
...+.|+++.|++.|++..+..+.-...++ .++..+...|+.++|+..+++.. .|+... +..+ ...+...|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 356788999999999888876554222344 77888888899999988888877 243322 3333 446777789
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+++|.++++++.+.. +-++..+..++..|...++.++|...++++... .|+...+..++..+...++..+|++.+
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999888764 235667777788888889999999888888754 344444544444443344444465544
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.92 E-value=2.9e-07 Score=66.33 Aligned_cols=151 Identities=12% Similarity=0.046 Sum_probs=78.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 83 (159)
..+.|+.+.|.+.+....+..+.++....-.....+...|+++.|...++.+.+.. | +......+...+...|++++
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHH
Confidence 44556666666666665544333222333334555566666666666666666643 3 34455566666666666666
Q ss_pred HHHHHHHHHHcCCCCcHHHHH-HHHHHH---HccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 84 AYRTMVDMHRKGHQPEEELCS-SLIFHL---GKMRAHSEALSVYNMLRYSK---RSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
+.+.+..+.+.+.. +...+. .-...+ ...+..+.+...+..+.... .+.+...+..+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 206 LDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 66666666665532 222221 111111 11122222222333332211 11356667777777888888887776
Q ss_pred hh
Q 039637 157 VV 158 (159)
Q Consensus 157 ~~ 158 (159)
++
T Consensus 285 ~l 286 (409)
T TIGR00540 285 II 286 (409)
T ss_pred HH
Confidence 64
No 49
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=3.4e-07 Score=64.55 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=103.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHcc
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKE 78 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~ 78 (159)
.+...|++++|.+.++...+..+. |...+.. ...+.. .+....+.+.+.. .....|+. .....+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 356679999999999998876554 4545543 223333 3445555555543 11222332 3334555678889
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCcHHHHh
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR-SMCK--ALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~ 155 (159)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|+.++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999998864 34566778888999999999999999998775432 2332 34557888999999999998
Q ss_pred hhhC
Q 039637 156 IVVK 159 (159)
Q Consensus 156 ~~~~ 159 (159)
.+++
T Consensus 207 ~~~~ 210 (355)
T cd05804 207 AIYD 210 (355)
T ss_pred HHHH
Confidence 8763
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=3.5e-07 Score=62.31 Aligned_cols=149 Identities=12% Similarity=0.097 Sum_probs=110.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh------hHHHHHHHHHcc
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN------TFHILIKYFCKE 78 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~ll~~~~~~ 78 (159)
+.-+++.++|.+.|-+|.+..+. +..+.-+|-+.|-+.|..+.|+.+...+.++ ||.. ....|-.-|...
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHh
Confidence 45578899999999999875544 5667778889999999999999999888874 5532 233455668888
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCcHHHH
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK----ALHEKILHILISGKLLKDA 154 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 154 (159)
|-++.|+++|..+.+.|. .-......|+..|....+|++|+.+-+++...+..+.. ..|.-+...+....+++.|
T Consensus 121 Gl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999887653 34557788999999999999999998877765544432 2355555555666677776
Q ss_pred hhhh
Q 039637 155 YIVV 158 (159)
Q Consensus 155 ~~~~ 158 (159)
..++
T Consensus 200 ~~~l 203 (389)
T COG2956 200 RELL 203 (389)
T ss_pred HHHH
Confidence 6654
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=2.5e-08 Score=73.03 Aligned_cols=152 Identities=9% Similarity=-0.044 Sum_probs=97.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCC---------------------------------CCCHHHHHHHHHHHHhcCChHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYD---------------------------------KYDVVLLNSMLCAYCRTGDMESV 49 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~---------------------------------~~~~~~~~~ll~~~~~~~~~~~a 49 (159)
.+|...+++++|.++|+.+.+..+ +-++.+|.++.+.|.-+++.+.|
T Consensus 361 rayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~A 440 (638)
T KOG1126|consen 361 RAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTA 440 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHH
Confidence 466777788888888887765522 23567788888888888888888
Q ss_pred HHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 50 MHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 50 ~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
+..|++..+ +.| ...+|+.+-.-+....+++.|...|+..+.... -+-.+|--+.-.|.+.++.+.|.-.|++...
T Consensus 441 ik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 441 IKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred HHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence 888888777 445 356666665666666677777777766553210 1222333445566677777777777766664
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 129 SKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
-+.. +......+...+-+.|+.|+|++++
T Consensus 518 INP~-nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 518 INPS-NSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred CCcc-chhHHhhhhHHHHHhhhhhHHHHHH
Confidence 3322 3445556666666667777766665
No 52
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.90 E-value=3.2e-09 Score=48.86 Aligned_cols=33 Identities=21% Similarity=0.502 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISP 63 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 63 (159)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=6.8e-08 Score=65.98 Aligned_cols=150 Identities=11% Similarity=-0.068 Sum_probs=121.2
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhH-HHHHHHHHccCh
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF-HILIKYFCKEKM 80 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~ 80 (159)
-+.|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-..|.+..++..|+.++.+-++. .|-..|| .-+.+.+...++
T Consensus 230 gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHh
Confidence 35788899999999999877665 345567888889999999999999999988773 4655555 456677888899
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
.++|.++++...+. .+.++....++...|.-.++++.|.++++++.+-|.. +...|+.+--+|.-.+++|-++.-
T Consensus 306 ~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 306 QEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999998876 3567788888888899999999999999999887766 677888888888888888776543
No 54
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.90 E-value=4.7e-07 Score=55.06 Aligned_cols=110 Identities=9% Similarity=-0.002 Sum_probs=89.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCC
Q 039637 17 LAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGH 96 (159)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (159)
.++...+..+. +......+...+.+.|++++|.+.|......+ ..+...+..+..++...|++++|..++++..+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 45555554443 55667788888999999999999999988854 2356778888899999999999999999988764
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 97 QPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 97 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
+.+...+..+...|...|+.++|...|+.....
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888889999999999999999988864
No 55
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=9.3e-07 Score=58.44 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=108.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHH
Q 039637 7 RSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYR 86 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 86 (159)
..|+-+....+........ ..|....+..+....+.|++..|...+.+...- -.+|..+|+.+--+|.+.|+.++|..
T Consensus 78 ~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHH
Confidence 3344444444443333222 226667777888888899999999999888763 24567888888888999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
-|.+..+.- .-++...+.+.-.|.-.|+.+.|..++......+. -+..+-..+.......|++++|.++.
T Consensus 156 ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 156 AYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 888888753 23556778888888888999999999888776443 35567788888889999999888753
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.2e-07 Score=63.80 Aligned_cols=150 Identities=12% Similarity=-0.031 Sum_probs=126.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~ 81 (159)
+-|...++...|.+-+++.++-.+. |-..|-.|.++|.-.+.+.=|+-.|++..+ ++| |...|.+|-.+|.+.+++
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccH
Confidence 4577888999999999999987665 999999999999999999999999999887 667 479999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCC-CHHHHHHHHHHHHhcCcHHHHh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS----K-RSM-CKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
++|++.|......|. .+...+..|...|.+.++.++|.+.|++-... | ..| ....-..|...+.+.+++++|.
T Consensus 449 ~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 449 EEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 999999999998764 36678999999999999999999998866541 2 222 2334455778889999999987
Q ss_pred h
Q 039637 156 I 156 (159)
Q Consensus 156 ~ 156 (159)
.
T Consensus 528 ~ 528 (559)
T KOG1155|consen 528 Y 528 (559)
T ss_pred H
Confidence 5
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.84 E-value=1.2e-06 Score=60.49 Aligned_cols=146 Identities=13% Similarity=-0.064 Sum_probs=109.7
Q ss_pred cCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHH
Q 039637 8 SGCFEETKQLAGDFEAKYD-KY--DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 83 (159)
.++.+.++.-+..+..... .| ....|..+...|.+.|++++|...|.+..+. .|+ ...|+.+-..+...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 3556777888877775432 22 2456888888999999999999999999884 454 6889999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
|...|++..+.. +-+..++..+...+...|++++|.+.|+...... |+..........+...++.++|.+.|
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999999753 2256678888888999999999999999887643 33221222223345567788887765
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.84 E-value=1.4e-06 Score=60.70 Aligned_cols=150 Identities=13% Similarity=0.008 Sum_probs=104.5
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHH----------------------------------HHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVV-------LLNSML----------------------------------CAY 40 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll----------------------------------~~~ 40 (159)
.+.|.+.|+|.....+...+.+.|.--|.. +|+.++ .-+
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~l 273 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERL 273 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHH
Confidence 467889999999999999998887533322 344444 445
Q ss_pred HhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHH
Q 039637 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 120 (159)
.+.|+.++|.++..+-.+.+..|+ -..+-.+.+.++++.-++..++-.+. ++-++..+.+|...|.+.+.+.+|.
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHH
Confidence 555666666666665555555444 12222344555555555555444432 2335578889999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
..|+... ...|+..+|+.+.+.+.+.|+..+|.++.
T Consensus 349 ~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 349 EALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHH
Confidence 9999665 45689999999999999999999998764
No 59
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.84 E-value=7.5e-09 Score=47.77 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=20.1
Q ss_pred hHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc
Q 039637 67 TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99 (159)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (159)
+|++++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666665554
No 60
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.83 E-value=9.3e-08 Score=55.36 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCC-CCChhhHHHHHHHHHccC--------hHHHHHHHHHHHHHcCCCCcHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPDYNTFHILIKYFCKEK--------MYMLAYRTMVDMHRKGHQPEEEL 102 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~ 102 (159)
+-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+-++.. ++-..+.+|+.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345566667777888888899999988888 888899988888876642 34577888888888888899999
Q ss_pred HHHHHHHHHc
Q 039637 103 CSSLIFHLGK 112 (159)
Q Consensus 103 ~~~li~~~~~ 112 (159)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9888877654
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.82 E-value=2.3e-06 Score=55.81 Aligned_cols=151 Identities=11% Similarity=-0.120 Sum_probs=125.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~ 81 (159)
..|-+.|+.+.|.+-|+...+..+. +-.+.|..-..+|..|++++|...|.+....-.-| ...||..+.-|..+.|+.
T Consensus 77 ~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~ 155 (250)
T COG3063 77 HYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQF 155 (250)
T ss_pred HHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc
Confidence 5678899999999999999887665 78889999999999999999999999988753222 257899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
+.|...|.+-++... -.+.+.-.+.....+.|+.-.|..+++.....+. ++....-..|+.=-..|+-+.+.+
T Consensus 156 ~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 156 DQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred hhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999988643 2445677888999999999999999999987655 787777777777777777766543
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.9e-07 Score=65.23 Aligned_cols=151 Identities=9% Similarity=0.065 Sum_probs=114.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
+.-.+++++|..-|++.++..+. +...|--+..+..|.+++++++..|++.+.. ++-.+..|+.....+..+++++.|
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHH
Confidence 33446778888888887776655 7778888888888899999999999998875 544578888888899999999999
Q ss_pred HHHHHHHHHcCC-------CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 85 YRTMVDMHRKGH-------QPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 85 ~~~~~~m~~~g~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
.+.|+...+... .+.+.+...++-.--+ +++..|..++++..+.. +-....|..|...-...|++++|.++
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAiel 559 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIEL 559 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999988775321 1223334444444333 88999999999888644 33567899999999999999999999
Q ss_pred hC
Q 039637 158 VK 159 (159)
Q Consensus 158 ~~ 159 (159)
|+
T Consensus 560 FE 561 (606)
T KOG0547|consen 560 FE 561 (606)
T ss_pred HH
Confidence 85
No 63
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.81 E-value=1.2e-08 Score=46.88 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCC
Q 039637 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP 98 (159)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 98 (159)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666554
No 64
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.80 E-value=2.8e-07 Score=53.42 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=62.0
Q ss_pred hHHHHHHHHHccChHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 039637 67 TFHILIKYFCKEKMYMLAYRTMVDMHRKGH-QPEEELCSSLIFHLGKMR--------AHSEALSVYNMLRYSKRSMCKAL 137 (159)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 137 (159)
|-...|.-|...+++...-.+|+.+++.|+ -|+..+|+.++.+.++.. ++-....++++|...+.+|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666666888888888888888888 788888888888777653 34566778888888888888888
Q ss_pred HHHHHHHHHhc
Q 039637 138 HEKILHILISG 148 (159)
Q Consensus 138 ~~~l~~~~~~~ 148 (159)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 88888877653
No 65
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=1.4e-07 Score=69.28 Aligned_cols=147 Identities=12% Similarity=-0.081 Sum_probs=70.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-----------------------------
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMR----------------------------- 54 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----------------------------- 54 (159)
.|+-.++.+.|++.|++..+.++. ..++|+.+-.-+.....++.|...|+
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHH
Confidence 455667777788887777654332 44555555555555555555555554
Q ss_pred -----HhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 55 -----KLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 55 -----~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
+..+ +.|. .+....+...+.+.|+.++|++++++...... .|+..----+..+...++.++|.+.+++++.
T Consensus 509 e~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 509 EFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 4443 2232 22333333444444555555555554443321 1222222233334444555555555555553
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 129 SKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
-++-+..+|-.+...|-+-|+.+.|.
T Consensus 586 -~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 586 -LVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred -hCcchHHHHHHHHHHHHHHccchHHH
Confidence 22223334445555555555555554
No 66
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=1.4e-06 Score=53.79 Aligned_cols=108 Identities=11% Similarity=-0.041 Sum_probs=87.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcC
Q 039637 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (159)
.+|++..+. .|+ .+..+...+...|++++|...|.+..... ..+...|..+-.++...|++++|...|+...+..
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 233 35567888899999999999999998743 2357788889999999999999999999999864
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 96 HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
+.++..+..+..++.+.|+.++|...|+.....
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888899999999999999999999988764
No 67
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=9.2e-07 Score=63.15 Aligned_cols=146 Identities=12% Similarity=0.058 Sum_probs=78.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHH
Q 039637 7 RSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAY 85 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~ 85 (159)
..|+.++|+++|-++..- ..-+..+.-.+.+.|-...++..|++++.+... +.| |+...+-|...|-+.|+-..|.
T Consensus 536 ~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhh
Confidence 345666666666544321 112444555555666666666666666655443 334 3556666666676666666665
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCcHHHHhhhh
Q 039637 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKIL-HILISGKLLKDAYIVV 158 (159)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~ 158 (159)
+++..--+. .+.+..+...|...|....-+++|+.+|++.. -+.|+..-|..++ .++-+.|++..|++++
T Consensus 613 q~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 613 QCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred hhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 554433322 33345555555555555555566666665543 3445555555555 3334456666666554
No 68
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.76 E-value=5.7e-07 Score=64.38 Aligned_cols=124 Identities=13% Similarity=0.000 Sum_probs=103.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc--CCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHH
Q 039637 25 YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL--AISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEEL 102 (159)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 102 (159)
+.+.+.....++++.+....+.+.+..++.+.... ....-..|..++++.|...|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33457778888999988888999999999888875 2223345667999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039637 103 CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (159)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (159)
++.|+..+.+.|++..|.++.-.|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888777777777777666666655
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.74 E-value=1e-06 Score=64.40 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=114.5
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHhHhc-----C-CCCC-hhh
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAK-----YD-KYDVVL-LNSMLCAYCRTGDMESVMHVMRKLDEL-----A-ISPD-YNT 67 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~-~~~ 67 (159)
...|...|+++.|.+++++..+- |. .|.+.+ .+.+...|...+++.+|..+|+++... | ..|. ..+
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 46789999999999999986543 21 234333 344777888999999999999998864 2 1222 356
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHH-----cC-CCCcHH-HHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCC---
Q 039637 68 FHILIKYFCKEKMYMLAYRTMVDMHR-----KG-HQPEEE-LCSSLIFHLGKMRAHSEALSVYNMLRY---SKRSMC--- 134 (159)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~--- 134 (159)
++.|-..|.+.|++++|..+++...+ .| ..|.+. .++.+...++..+++++|..+++...+ .-..++
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 67777889999999998888776552 12 123332 446677788888999999999885542 112222
Q ss_pred -HHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 135 -KALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 135 -~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
..+++.+-..|.+.|++++|+++++
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k 391 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYK 391 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3579999999999999999999874
No 70
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=1.9e-06 Score=57.01 Aligned_cols=121 Identities=14% Similarity=0.037 Sum_probs=103.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 81 (159)
....+.|++.+|..+|++.....+ +|...|+.+--+|-+.|+.++|..-|.+..+ +.|+ ....+.+.-.+.-.|++
T Consensus 108 k~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 108 KNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCH
Confidence 456788999999999999987655 4999999999999999999999999999988 5565 46678888888899999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
+.|..++......+. -|..+-+.+.......|++++|.++...-.
T Consensus 185 ~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 185 EDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 999999998887653 377788889999999999999999876444
No 71
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.72 E-value=2.2e-06 Score=52.87 Aligned_cols=91 Identities=5% Similarity=-0.147 Sum_probs=79.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+.+.|++++|...|+......+. +...|..+..++.+.|++++|...|.+..... ..+...+..+..++...|+++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 3567889999999999999887665 88999999999999999999999999999843 235688888999999999999
Q ss_pred HHHHHHHHHHHcC
Q 039637 83 LAYRTMVDMHRKG 95 (159)
Q Consensus 83 ~a~~~~~~m~~~g 95 (159)
+|...+....+..
T Consensus 110 eAi~~~~~Al~~~ 122 (144)
T PRK15359 110 LAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998753
No 72
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.71 E-value=2.8e-06 Score=60.48 Aligned_cols=122 Identities=14% Similarity=0.109 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (159)
..-..|+..+...++++.|..+|+++.+.. |+ ....+...+...++-.+|.+++.+.++.. +-+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344566666777889999999999998854 54 44557788878888889999998888653 34677777778888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 111 GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 111 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+.++.+.|..+.+++... .|-+..+|..|..+|.+.|++++|+-.+
T Consensus 245 l~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999988853 3334568999999999999999998665
No 73
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=4.9e-06 Score=63.44 Aligned_cols=123 Identities=12% Similarity=-0.037 Sum_probs=105.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~ 81 (159)
....+.|..++|..+++...+..|. +...+..+..++.+.+++++|+...++.... .|+. .....+-.++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcch
Confidence 4456789999999999999987554 6788899999999999999999999999984 4664 5556677888999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
++|..+|+++... .+-+..++..+...+-+.|+.++|...|++..+.
T Consensus 171 ~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 171 EQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999983 3345778999999999999999999999988753
No 74
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=4.8e-06 Score=51.43 Aligned_cols=122 Identities=17% Similarity=0.068 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh----hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc--HHHHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY----NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE--EELCSS 105 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ 105 (159)
.|..++..+ ..++...+...++.+.+.. |+. ...-.+-..+...|++++|...|+.+......|+ ....-.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444 3666777777777776642 222 2222334556677777777777777776542222 123344
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 106 LIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+...+...|++++|...++..... ......+...-..|.+.|++++|...|
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 566677777777777777664322 233445556667777777777777665
No 75
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.69 E-value=5.4e-06 Score=57.90 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=96.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh-------hhHHHHHHHHHc
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-------NTFHILIKYFCK 77 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~ 77 (159)
....|+.+.|..-.+.+.+.++. ++.......++|.+.|++.++..++.+|.+.|+--+. .+|..+++-...
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 44556667777666666665554 6667777777777777777777777777777653332 344555555544
Q ss_pred cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-------------------------
Q 039637 78 EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS------------------------- 132 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------------------------- 132 (159)
.+..+.-..+|++.-+. ..-++..-.+++.-+.++|+.++|.++.++..+.+..
T Consensus 242 ~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHH
Confidence 44444444455444432 2234555566677777777777777776655443322
Q ss_pred -----CCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 133 -----MCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 133 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
.++..+.++-..|.+.+.|.+|.+.|+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 233457888888889999988887764
No 76
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=5.1e-06 Score=51.33 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=90.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh--hhHHHHHHHHHccChHH
Q 039637 7 RSGCFEETKQLAGDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY--NTFHILIKYFCKEKMYM 82 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~ 82 (159)
..++...+.+.++.+.+..+.-. ....-.+...+...|++++|...|++.......|+. .....+...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 57899999999999998755421 223334557888999999999999999987633332 23345678888999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (159)
+|+..++..... ...+..+......|.+.|+.++|...|+..
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999999775433 345567788899999999999999999863
No 77
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.69 E-value=2.3e-08 Score=44.88 Aligned_cols=29 Identities=28% Similarity=0.676 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcC
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELA 60 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 60 (159)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
No 78
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.68 E-value=2.9e-07 Score=65.80 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=91.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKY--DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
+.+.+.-+++.+..++.++.... ...-..+..++++.|.+.|..++++.+++.=..-|+-||..|++.|++.+.+.|+
T Consensus 74 n~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~ 153 (429)
T PF10037_consen 74 NNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGN 153 (429)
T ss_pred hhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhccc
Confidence 44455567888999988887652 2223445679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKM 113 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 113 (159)
+..|.++...|...+...++.|+...+.+|.+.
T Consensus 154 ~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 154 YKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999988777767777777666666665
No 79
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=1.6e-06 Score=52.68 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=81.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+.+.|++++|.+.|+...+.++. +...|..+...+.+.|++++|...+++....+ ..+...+..+-.++...|+++
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence 4677889999999999999887654 88899999999999999999999999987753 335677777888999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCS 104 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~ 104 (159)
+|...++...+.. |+...+.
T Consensus 103 ~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 103 SALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred HHHHHHHHHHHhc--cccchHH
Confidence 9999999998753 5444433
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=1e-05 Score=52.66 Aligned_cols=142 Identities=7% Similarity=-0.021 Sum_probs=106.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
-.|...|+++.+....+.+.. |. ..+...++.+++...+....+.. ..|...|..+...|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 367888888887555433321 10 01223667788888888877743 356788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH-HHccCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFH-LGKMRA--HSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
+|...+++..+.. +-+...+..+..+ +...|+ .++|.+++++..... +-+..++..+...+.+.|++++|...++
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999865 3467788777776 467777 599999999998754 3367788999999999999999998763
No 81
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=1.1e-05 Score=57.82 Aligned_cols=119 Identities=13% Similarity=0.019 Sum_probs=98.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHccChHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYML 83 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~ 83 (159)
+...|+.++|+..++.+.+.-+. |++.+....+.+.+.++.++|.+.+++++. ..|+. ...-.+-.++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHH
Confidence 45678999999999998876554 888888999999999999999999999988 46774 444567788999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
|..+++...... +-|+..|..|..+|...|+..++..-..+..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999888763 5688899999999999998887776655544
No 82
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=2.3e-06 Score=60.92 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=96.7
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
++.+...++++.|.++|+++.+.. |+ ....++..+...++..+|.+++++..+.. +-+......-...+.+.+++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 556677799999999999999765 34 34457888888889999999999988642 23455555566678899999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
+.|+.+.++..+.. +.+..+|..|..+|.+.|+++.|...++.+.
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999853 2355699999999999999999999998776
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.61 E-value=1.6e-06 Score=59.61 Aligned_cols=118 Identities=9% Similarity=0.069 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc----cChHHHHHHHHHHHHHcCCCCcHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK----EKMYMLAYRTMVDMHRKGHQPEEELCS 104 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (159)
+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~ln 205 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLN 205 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHH
Confidence 3444445555555555555555555555542 222 222223332221 12355555555555433 234555555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
.+..+....|++++|..++++....+ +-+..+...++-+....|+.
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCC
Confidence 55555555555555555555544322 22333444444444444433
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.61 E-value=8.6e-06 Score=59.73 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=116.0
Q ss_pred hHHHhcCCHHHHHHHHHHHH---hC--CCC-CCH-HHHHHHHHHHHhcCChHHHHHHHHHhHhc---CCCCC----hhhH
Q 039637 3 SAFCRSGCFEETKQLAGDFE---AK--YDK-YDV-VLLNSMLCAYCRTGDMESVMHVMRKLDEL---AISPD----YNTF 68 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~---~~--~~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~----~~~~ 68 (159)
.+|++.|++++|...+++.. +. +.. |.+ ..++.+...++..+++++|..++.+..+. -..++ ..++
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 46899999999999888643 11 222 232 35677888899999999999998876653 11122 3678
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHc-----C-CCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CC-CCC-CH
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHRK-----G-HQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRY----SK-RSM-CK 135 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~-~~~-~~ 135 (159)
+.|-..|-..|++++|.+++.+.+.. | ..+ .-..++.+...|.+.++..+|.++|..... -| ..| ..
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 89999999999999999999888742 2 122 234667899999999999999998875542 22 223 35
Q ss_pred HHHHHHHHHHHhcCcHHHHhhhh
Q 039637 136 ALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+|..|...|-+.|+++.|.++.
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHHHH
Confidence 68999999999999999998864
No 85
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.2e-06 Score=60.88 Aligned_cols=140 Identities=11% Similarity=0.059 Sum_probs=112.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc--CC---C-CChhhHHHHHHHHHc
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL--AI---S-PDYNTFHILIKYFCK 77 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~---~-~~~~~~~~ll~~~~~ 77 (159)
-|.+.++.+.|.++|.....-.|. |+.+.+-+.-.....+.+.+|...|+..++. .+ + ....+++.|-.+|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 367789999999999877765444 7888998888888899999999999887732 11 1 134567888899999
Q ss_pred cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039637 78 EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (159)
.+.+++|+..+++.+... +-+..++.++.-.|...|+++.|...|.+.. ...|+..+-..++..++.
T Consensus 468 l~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 999999999999998763 4588899999999999999999999999887 456776666666665544
No 86
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.58 E-value=1.2e-07 Score=42.38 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=16.9
Q ss_pred hHHHHHHHHHccChHHHHHHHHHHHHHcC
Q 039637 67 TFHILIKYFCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (159)
||+.++++|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555566666666666666655555544
No 87
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.57 E-value=1.4e-06 Score=66.72 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=107.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHH
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 87 (159)
.+..++|++.|.......|. |.+.-|-+...++..|++.+|.++|.+..+... -...+|-.+..+|..+|++..|.+.
T Consensus 625 kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHH
Confidence 46788999999999887776 999999999999999999999999999998753 4567888999999999999999999
Q ss_pred HHHHHHc-CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 039637 88 MVDMHRK-GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHE 139 (159)
Q Consensus 88 ~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (159)
|+...+. .-.-++.+.+.|.+++.+.|++.+|...........+.-+...||
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 9888765 334577889999999999999999999887666433332333344
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=9.9e-07 Score=60.48 Aligned_cols=123 Identities=12% Similarity=0.077 Sum_probs=79.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
+.|-+-.+++.|+.+|.+-.+.- +-|+.-..-+.+.+-..++.++|.++|+...+.. ..++.....+...|.-.++++
T Consensus 264 kvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 264 KVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChH
Confidence 46677777777877777666542 2244445566666777777777777777766642 234555566666666677777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
-|+.+++++++.|.. ++..|+.+.-+|.-.+++|.+.--|++..+
T Consensus 342 ~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 777777777777753 556666666666666666666655555443
No 89
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.57 E-value=1.3e-06 Score=66.50 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=59.9
Q ss_pred CChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039637 63 PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKIL 142 (159)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 142 (159)
|+..+|..++.+-...|+.+.|..++.+|.+.|.+.+.+-|..|+-+ .++...+..+++-|...|+.|+..|+.--+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 46666666777767777777777777777777777666666666544 666677777777777777777777777666
Q ss_pred HHHHhcCcHHH
Q 039637 143 HILISGKLLKD 153 (159)
Q Consensus 143 ~~~~~~g~~~~ 153 (159)
..+.++|....
T Consensus 279 ip~l~N~~t~~ 289 (1088)
T KOG4318|consen 279 IPQLSNGQTKY 289 (1088)
T ss_pred Hhhhcchhhhh
Confidence 66666555433
No 90
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.56 E-value=2.8e-07 Score=51.47 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHH
Q 039637 8 SGCFEETKQLAGDFEAKYDK-YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAY 85 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~ 85 (159)
.|+++.|+.+|+++.+..+. ++...+-.+..+|.+.|++++|..++++ .+ ..|+ ......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45666666666666655442 2333444456666666666666666655 22 1122 222333455566666666666
Q ss_pred HHHHH
Q 039637 86 RTMVD 90 (159)
Q Consensus 86 ~~~~~ 90 (159)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66543
No 91
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.55 E-value=3.6e-05 Score=58.86 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=113.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHH
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYR 86 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~ 86 (159)
.|+.++|.+++.+.++..+. +...|-.|...|-..|+.+++...+ ++.+.+.| |...|..+-.-..+.|+++.|.-
T Consensus 152 rg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 49999999999999987665 8899999999999999999998876 44444555 46788888888899999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCcHHHHhhhh
Q 039637 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALH----EKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|.+.++.. +++.....--...|-+.|+...|...|.++.....+.|..-. -.+++.+...++-+.|.+.+
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999875 456556666778899999999999999988865433333322 23455566666666666544
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.53 E-value=3.6e-05 Score=54.32 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=51.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-CCCh--hhHHHHHHHHHccCh
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPDY--NTFHILIKYFCKEKM 80 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~~~~ 80 (159)
.+...|++++|.+.++...+..+. +...+..+..++...|++++|...+.+.....- .|+. ..|..+...+...|+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 345566677777777666665443 455666666666667777777766666554321 1121 223345566666677
Q ss_pred HHHHHHHHHHHH
Q 039637 81 YMLAYRTMVDMH 92 (159)
Q Consensus 81 ~~~a~~~~~~m~ 92 (159)
+++|..++++..
T Consensus 202 ~~~A~~~~~~~~ 213 (355)
T cd05804 202 YEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHHh
Confidence 777777766654
No 93
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.51 E-value=2.1e-05 Score=46.46 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC----hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCC--CcHHHHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQ--PEEELCSS 105 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ 105 (159)
++-.+...+.+.|++++|.+.|.++.+.. |+ ...+..+..++.+.|+++.|.+.++.+...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 44556666777788888888887777642 32 234555777777778888888888777754211 12445666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC
Q 039637 106 LIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
+..++.+.|+.++|.+.++.+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777778888888888877754
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.50 E-value=1.6e-05 Score=53.01 Aligned_cols=124 Identities=14% Similarity=0.088 Sum_probs=93.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhc--------CChHHHHHHHHHhHhcCCCCChh-hH---
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDV--VLLNSMLCAYCRT--------GDMESVMHVMRKLDELAISPDYN-TF--- 68 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~-~~--- 68 (159)
..+.+.|++++|...++.+.+..+.... .++..+..++... |++++|.+.|++.... .|+.. .+
T Consensus 78 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~ 155 (235)
T TIGR03302 78 YAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAK 155 (235)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHH
Confidence 4677889999999999999876654222 2455555555554 7889999999999875 34432 21
Q ss_pred --------------HHHHHHHHccChHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 69 --------------HILIKYFCKEKMYMLAYRTMVDMHRKGH--QPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 69 --------------~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..+...+.+.|++.+|...+....+... +.....+..+...+.+.|+.++|..+++.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 156 KRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1344567888999999999999987531 22457888999999999999999999998875
No 95
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=2.7e-05 Score=55.90 Aligned_cols=144 Identities=13% Similarity=0.048 Sum_probs=114.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
+.|-...+..+|.+++-..... ++-|+.+...|.+.|-+.|+-..|.+.+-.--.- ++-+..|..-|...|....-++
T Consensus 566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHH
Confidence 4455667888888888555433 3348899999999999999999998887554331 3446788888888899888999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLG-KMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
+++.+|+...- ++|+..-|..++..|. +.|++.+|..++++++. .++.+......+++.+...|.-
T Consensus 644 kai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 644 KAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccch
Confidence 99999987653 6899999998876655 56999999999999986 7888999999999998887753
No 96
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.49 E-value=1.1e-05 Score=44.97 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (159)
+..+...+...|++++|...+.+..+.. ..+...+..+..++...+++++|.+.+....+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445556666677777777776666532 1223455556666666677777777776666543 2233456666666777
Q ss_pred cCCHHHHHHHHHHHHh
Q 039637 113 MRAHSEALSVYNMLRY 128 (159)
Q Consensus 113 ~g~~~~a~~~~~~~~~ 128 (159)
.|+.+.|...++....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777666543
No 97
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=1.1e-05 Score=47.60 Aligned_cols=91 Identities=15% Similarity=0.081 Sum_probs=74.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC----hhhHHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDK--YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFC 76 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~ 76 (159)
..+.+.|++++|.+.|+.+.+..+. .....+..+..++.+.|++++|...|+...... |+ ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHHHHH
Confidence 4577889999999999999876443 124567779999999999999999999998743 33 356777888899
Q ss_pred ccChHHHHHHHHHHHHHcC
Q 039637 77 KEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g 95 (159)
..|++++|.+.++++.+..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HhCChHHHHHHHHHHHHHC
Confidence 9999999999999999874
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.48 E-value=9.1e-06 Score=55.90 Aligned_cols=123 Identities=11% Similarity=0.088 Sum_probs=91.7
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK 77 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 77 (159)
+..|++.++++.|.+.++.|.+.+ .| .+...+..++.. ...+.+|.-+|+++.+. ..++..+.+.+..+...
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHH
Confidence 578999999999999999998753 23 334444444432 34799999999998764 56788889999999999
Q ss_pred cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH-HHHHHHHHHHHhC
Q 039637 78 EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH-SEALSVYNMLRYS 129 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 129 (159)
.|++++|.+++.+..... +-++.+...++-+..-.|+. +.+.+.+..++..
T Consensus 214 ~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999987654 34667777788777777877 7788899888753
No 99
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.46 E-value=7.9e-06 Score=45.52 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=74.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.++...+..+. +...+..+...+...+++++|.+.+....... ..+..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 4577889999999999998876544 55788889999999999999999999988753 233467788888999999999
Q ss_pred HHHHHHHHHHHc
Q 039637 83 LAYRTMVDMHRK 94 (159)
Q Consensus 83 ~a~~~~~~m~~~ 94 (159)
.|...+....+.
T Consensus 86 ~a~~~~~~~~~~ 97 (100)
T cd00189 86 EALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHcc
Confidence 999999887754
No 100
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.44 E-value=2.9e-05 Score=59.37 Aligned_cols=143 Identities=10% Similarity=0.012 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHH
Q 039637 13 ETKQLAGDFEAKY--DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVD 90 (159)
Q Consensus 13 ~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 90 (159)
....+...+.+.. +.-++..|.-+.++|...|++++|+.+|..+...-..-+...|-.+..+|...|..++|.+.|+.
T Consensus 395 ~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 395 LLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred hHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333455555 44456789999999999999999999999999876556678899999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 91 MHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY--------SKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 91 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
++... +.+...--.|-..+-+.|+.|+|..++..+.. ....|...........+...|+.++-..
T Consensus 475 vl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 475 VLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99863 34556677888899999999999999988542 2345666666777788888888877443
No 101
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.43 E-value=1.9e-05 Score=55.98 Aligned_cols=89 Identities=13% Similarity=-0.010 Sum_probs=75.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~ 82 (159)
.+...|++++|++.|++..+..+. +...|..+..+|.+.|++++|+..+++..+. .| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 456789999999999999887765 7888889999999999999999999999884 45 4567778888899999999
Q ss_pred HHHHHHHHHHHcC
Q 039637 83 LAYRTMVDMHRKG 95 (159)
Q Consensus 83 ~a~~~~~~m~~~g 95 (159)
+|+..|++.++..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988753
No 102
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=2.4e-05 Score=56.39 Aligned_cols=149 Identities=11% Similarity=0.032 Sum_probs=121.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a 84 (159)
.-.|+.-.|.+-|+..++..+. ++..|--+...|....+.++-...|++... +.| |..+|..--....-.+++++|
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHH
Confidence 3468888899999998887665 334477788889999999999999998877 444 467787777777788999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
..-|++..... +-+...|-.+.-+..+.++++++...|++.+. ..|-.+..|+.....+...++++.|.+.|+
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 99999888753 23566777777777888999999999999886 677778899999999999999999988764
No 103
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.41 E-value=4.6e-06 Score=54.10 Aligned_cols=89 Identities=19% Similarity=0.326 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc----------------ChHHHHH
Q 039637 27 KYDVVLLNSMLCAYCR-----TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE----------------KMYMLAY 85 (159)
Q Consensus 27 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~ 85 (159)
..|-.+|..+++.|.+ .|..+-....++.|.+-|+.-|..+|+.||+.+-+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3466666666666654 366666777777777777777777777777776442 1234567
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 039637 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (159)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (159)
+++++|...|+.||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 777888877777887788777777777664
No 104
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.40 E-value=1.6e-05 Score=51.70 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=83.1
Q ss_pred HHHHHHhHhcCCCCChhhHHHHHHHHHcc-----ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC----------
Q 039637 50 MHVMRKLDELAISPDYNTFHILIKYFCKE-----KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR---------- 114 (159)
Q Consensus 50 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---------- 114 (159)
.+.|.+... -..+..+|..+++.+.+. |+.+-....+..|.+-|++-|..+|+.|++.+-+..
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 444444322 357889999999988654 788888888999999999999999999999987633
Q ss_pred ------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 115 ------AHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 115 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
+-+-|++++++|...|+-||..++..+++.+.+.+..
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 4578999999999999999999999999999988753
No 105
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.38 E-value=2.9e-06 Score=45.25 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=45.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHIL 71 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 71 (159)
.+.|++++|.+.|+.+.+..+. +...+-.+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4677888888888888776655 7777777888888888888888888887774 4664444443
No 106
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.38 E-value=6.3e-07 Score=68.17 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=80.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcC
Q 039637 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (159)
.++-.+...|+.|+.++|..+|.-||..|+.+.|- +|.-|.......+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667888999999999999999999999999998 9999988888888899999999988888877664
Q ss_pred CCCcHHHHHHHHHHHHccCCHHH
Q 039637 96 HQPEEELCSSLIFHLGKMRAHSE 118 (159)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~ 118 (159)
.|.+.+|..|..+|.++|++..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 6888899999999999998765
No 107
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.37 E-value=1.9e-06 Score=48.12 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=48.2
Q ss_pred cCChHHHHHHHHHhHhcCCC-CChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 039637 43 TGDMESVMHVMRKLDELAIS-PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALS 121 (159)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (159)
.|+++.|+.+++++.+.... |+...+-.+..++.+.|++++|..+++. .+.+. .+....-.+..++.+.|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777764321 1233344467777777777777777776 22211 123344455677777777777777
Q ss_pred HHHH
Q 039637 122 VYNM 125 (159)
Q Consensus 122 ~~~~ 125 (159)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
No 108
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.33 E-value=0.00019 Score=45.65 Aligned_cols=117 Identities=6% Similarity=-0.072 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC--hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSL 106 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (159)
....+..+...+...|++++|...|++..+.+..++ ...+..+...+.+.|++++|...+.+..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345678888889999999999999999987543332 3577888889999999999999999988753 2355666677
Q ss_pred HHHHHccCC--------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 107 IFHLGKMRA--------------HSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 107 i~~~~~~g~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
...+...|+ +++|.++++..... .|+ .|..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cch--hHHHHHHHHHhcCc
Confidence 777777666 45666666665542 233 35666666666554
No 109
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.31 E-value=5.5e-05 Score=51.93 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=76.2
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
|+..-+.+..+.|..+|.+..+.+. ...++...++|+- .-.++.+.|..+|+...+. +..+...|..-++.+...++
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCc
Confidence 3445556667778888877775432 2333333333332 2245566678888777764 44556666777777777778
Q ss_pred HHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 81 YMLAYRTMVDMHRKGHQPE---EELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.+.++.+|++.... +.++ ...|...+..=.+.|+++.+.++.+++..
T Consensus 86 ~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 86 INNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888777754 3222 24777777777777888877777777765
No 110
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.29 E-value=5.6e-05 Score=47.83 Aligned_cols=114 Identities=6% Similarity=-0.048 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC--ChhhHHHHHHHHHccChHHHHHHH
Q 039637 11 FEETKQLAGDFE-AKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP--DYNTFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 11 ~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~ 87 (159)
+..+...+..+. ..+...-...|..+...+...|++++|+..|.+.......| ...++..+-..+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555553 22222235677888888889999999999999988653222 235788888999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHH-------ccCCHHHHHHHHHH
Q 039637 88 MVDMHRKGHQPEEELCSSLIFHLG-------KMRAHSEALSVYNM 125 (159)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~-------~~g~~~~a~~~~~~ 125 (159)
+....... +....++..+...+. +.|+++.|...+++
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99988753 234455666666666 77887766555543
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=7.9e-05 Score=53.60 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=94.8
Q ss_pred HHHHHhcCChHHHHHHHHHhHhcCCCCChh-hHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccC
Q 039637 37 LCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMR 114 (159)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g 114 (159)
...+.+.|++++|+..+..+... .|+.. -.......+.+.++..+|.+.++.+... .|+ ....-.+..+|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 33456788999999999998874 46554 4456667899999999999999999975 354 566678899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 115 AHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
++.+|.+.++.... ..+-|...|..|.++|...|+..+|..
T Consensus 389 ~~~eai~~L~~~~~-~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 389 KPQEAIRILNRYLF-NDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred ChHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 99999999998875 556688899999999999999888764
No 112
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.28 E-value=6.3e-06 Score=43.56 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=40.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
..+.+.|++++|.+.|+...+..+. +...|..+..++.+.|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566777778888888777776644 677777777777777888887777777765
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00019 Score=48.16 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=42.6
Q ss_pred HHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc----cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 039637 40 YCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK----EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (159)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (159)
+.+..+.+-|...+++|.+- -+..|.+.|..++.+ .+....|.-+|++|-++ ..|++.+.+-...++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 33444455555555555541 233444444444332 23455555555555542 34555555555555555566
Q ss_pred HHHHHHHHHHHHh
Q 039637 116 HSEALSVYNMLRY 128 (159)
Q Consensus 116 ~~~a~~~~~~~~~ 128 (159)
+++|..+++....
T Consensus 223 ~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 223 YEEAESLLEEALD 235 (299)
T ss_pred HHHHHHHHHHHHh
Confidence 6666665555554
No 114
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.26 E-value=0.00028 Score=52.33 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=102.4
Q ss_pred CCHH--HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHH
Q 039637 28 YDVV--LLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCS 104 (159)
Q Consensus 28 ~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (159)
|+.. ++.-+...|-..|++++|++..++..+. .|+ +..|..-.+.+-+.|++.+|.+.++....... -|..+-+
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNs 266 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINS 266 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHH
Confidence 4553 4466678888999999999999998884 577 57777888889999999999999999988753 4777888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHhcCcHHHHhhhh
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRYSKRSMCKAL--------HEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~A~~~~ 158 (159)
-.+..+.+.|++++|.+++......+..|.... ......+|.+.|++..|++.|
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 889999999999999999998876554333322 245568899999999998765
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0001 Score=49.31 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=96.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCC
Q 039637 17 LAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGH 96 (159)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (159)
+.+.+..+...-+......-...|+..+++++|++..... -+......=+..+.+..+.+-|.+.++.|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 3344444334434444555567789999999999988762 23344444455667778889999999999864
Q ss_pred CCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 97 QPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 97 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
.+-.|.+.|..++.+ .+.+..|.-+|++|.. ..+|++.+.+-..-++...|++++|..+++
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 244566656666554 4679999999999985 678899999999999999999999998763
No 116
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.26 E-value=0.00039 Score=51.62 Aligned_cols=139 Identities=13% Similarity=0.036 Sum_probs=97.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc----C----------CCCChh--hHHHHHHHHHc
Q 039637 14 TKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----A----------ISPDYN--TFHILIKYFCK 77 (159)
Q Consensus 14 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~----------~~~~~~--~~~~ll~~~~~ 77 (159)
+.+.+..+...|++ .+|+.+-..|....+..-..+++...... + -.|+.. ++.-+...|-.
T Consensus 130 ~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 33444444555543 34566666666555555555666555432 1 123332 33455666888
Q ss_pred cChHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 78 EKMYMLAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
.|++++|++++++.++. .|+ +..|..-.+.+-..|++++|...++..+.-. .-|..+-+..+..+.++|+.++|.+
T Consensus 207 ~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred hCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999988875 455 6788888999999999999999999988643 4477777888899999999999988
Q ss_pred hh
Q 039637 157 VV 158 (159)
Q Consensus 157 ~~ 158 (159)
++
T Consensus 284 ~~ 285 (517)
T PF12569_consen 284 TA 285 (517)
T ss_pred HH
Confidence 65
No 117
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=0.00016 Score=52.29 Aligned_cols=142 Identities=11% Similarity=-0.048 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHccChHHHHHHH
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~ 87 (159)
+++..|..+|++...-. ..+...|-..+..=.++.....|..+|++.+. +-|.+ ..|---+..-...|+...|.++
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44556666666655433 23555555555555555555555555555444 12221 1222222222333444444444
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 88 MVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
|+.-.. .+|+...|++.|..=.+...++.|..++++..- +.|+..+|-.....=.++|....|..+
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 443332 234444444444444444444444444444431 234444444444444444444444333
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00035 Score=46.58 Aligned_cols=83 Identities=13% Similarity=0.034 Sum_probs=36.2
Q ss_pred cCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 039637 43 TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122 (159)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (159)
.|.+++|+++++.+.+.. +-|..++-.=+...-.+|+..+|++-+....+. +..|...|.-+...|...|++++|...
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344555555555554433 122333333333333334434444444444433 233444555555555555555555555
Q ss_pred HHHHH
Q 039637 123 YNMLR 127 (159)
Q Consensus 123 ~~~~~ 127 (159)
++++.
T Consensus 177 lEE~l 181 (289)
T KOG3060|consen 177 LEELL 181 (289)
T ss_pred HHHHH
Confidence 54444
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00048 Score=45.95 Aligned_cols=143 Identities=15% Similarity=0.059 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHH-HHHHccChHH
Q 039637 9 GCFEETKQLAGDFEAK---Y-DKYDVV-LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILI-KYFCKEKMYM 82 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~~~~~ 82 (159)
.+.++.++++.++... | ..++.+ .|..++-+....|+...|..+++.+... + |...-...|= --+...|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 4445555555544321 2 222322 3334444444455555555555554443 1 2211111000 0122334555
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
+|+++++.+++.. +.|..++..=+...-..|+.-+|++-+++..+ .+..|...|.-+...|...|+++.|.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 5555555555443 23444444444444444444455554444443 33445555555555555555555543
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.22 E-value=7e-05 Score=46.45 Aligned_cols=97 Identities=6% Similarity=-0.108 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
+....-.+..-+...|++++|..+|+-+.. +.|.. .-|-.|--++-..|++.+|++.|........ -|+..+-.+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 344555666677889999999999998887 45654 3444677777778999999999998887763 5777888889
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 039637 108 FHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.++...|+.+.|.+.|+....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999997664
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.22 E-value=0.00021 Score=57.54 Aligned_cols=147 Identities=13% Similarity=-0.016 Sum_probs=100.1
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC---hhhHHHHHHHHHcc
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD---YNTFHILIKYFCKE 78 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~ 78 (159)
...|-+.++.++|-++++.|.+.= .....+|...++.+.+.++-++|.+++.+..+. .|. .....-....-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 345667778888888888887542 236677888888888888888888888777763 344 23334444555677
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCcHH
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK--ALHEKILHILISGKLLK 152 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 152 (159)
|+.+.++.+|+..+..- +--...|+.+|+.-.++|+.+.+..+|++....+.+|-. ..|...+..=-+.|+-+
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 88888888888777652 335568888888888888888888888888876665542 34444444444444433
No 122
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.18 E-value=0.00014 Score=51.66 Aligned_cols=90 Identities=8% Similarity=-0.104 Sum_probs=77.1
Q ss_pred HHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 039637 37 LCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (159)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (159)
...+...|++++|+++|.+..+. .| +...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 45667889999999999999984 34 46777788889999999999999999999864 3467788899999999999
Q ss_pred HHHHHHHHHHHHhC
Q 039637 116 HSEALSVYNMLRYS 129 (159)
Q Consensus 116 ~~~a~~~~~~~~~~ 129 (159)
+++|...|++....
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988864
No 123
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.17 E-value=9.1e-05 Score=50.86 Aligned_cols=125 Identities=13% Similarity=0.076 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHH-HHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY-FCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
.+|..+|+..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 579999999999999999999999998643 2234444433333 33357788899999999876 45677889999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 110 LGKMRAHSEALSVYNMLRYSKRSMC---KALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 110 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+.+.++.+.|..+|++.... .++. ..+|...+..=.+.|+++....+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999864 3322 358999999999999998877664
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.15 E-value=0.00074 Score=45.46 Aligned_cols=152 Identities=11% Similarity=0.079 Sum_probs=103.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc---
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLL---NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK--- 77 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--- 77 (159)
.+.+.|++++|.+.|+.+....+.. ...- -.+..++.+.+++++|...+++..+..-.-...-|...+.+.+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 3567899999999999999876653 3333 35567888999999999999999885321122334444444331
Q ss_pred --------------cCh---HHHHHHHHHHHHHcCCCCcH------HH------------HHHHHHHHHccCCHHHHHHH
Q 039637 78 --------------EKM---YMLAYRTMVDMHRKGHQPEE------EL------------CSSLIFHLGKMRAHSEALSV 122 (159)
Q Consensus 78 --------------~~~---~~~a~~~~~~m~~~g~~~~~------~~------------~~~li~~~~~~g~~~~a~~~ 122 (159)
.+| ..+|...|+.+++. -|++ .. --.+.+.|.+.|.+..|..-
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r 197 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNR 197 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 112 23566777777764 2331 00 01344668889999999999
Q ss_pred HHHHHhC--CCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 123 YNMLRYS--KRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 123 ~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++.+... +.+........++.+|.+.|..++|..+.
T Consensus 198 ~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 198 VEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9988853 34445667778889999999999997653
No 125
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.14 E-value=0.00075 Score=50.79 Aligned_cols=124 Identities=10% Similarity=-0.052 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
....|-.....+...|+...|..++.+..+..- -+...|-.-++.-.....++.|..+|.+... ..|+..+|.--+.
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSAN 659 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhH
Confidence 333444444444444444444444444444221 1234444444444444455555555544443 2234444444444
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
.---.++.++|.+++++..+ .++.-...|..+-+.+-..++++.|.+
T Consensus 660 ~er~ld~~eeA~rllEe~lk-~fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALK-SFPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHH-hCCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 44444455555555544443 222233344444444444444444443
No 126
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=0.00065 Score=50.02 Aligned_cols=151 Identities=10% Similarity=0.090 Sum_probs=96.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~ 82 (159)
.+.+.|++.+|.-.|+..++.+|. +...|--|-..-..+++-..|+..+.+..+ +.|+ ....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHH
Confidence 457888899999999988887765 777888888887777777777777777766 4453 333333334443333333
Q ss_pred HHHHHHHHH-----------------------------------------H-HcCCCCcHHHHHHHHHHHHccCCHHHHH
Q 039637 83 LAYRTMVDM-----------------------------------------H-RKGHQPEEELCSSLIFHLGKMRAHSEAL 120 (159)
Q Consensus 83 ~a~~~~~~m-----------------------------------------~-~~g~~~~~~~~~~li~~~~~~g~~~~a~ 120 (159)
.|.+.+..- . ..+..+|+.+...|--.|.-.|.+++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 333333222 1 2222355666777777777777778888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 121 SVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
..|+.... .-|-|..+||.|-..+....+-++|...|
T Consensus 451 Dcf~~AL~-v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 451 DCFEAALQ-VKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHh-cCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 87777664 23345567777777777777777776544
No 127
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00017 Score=49.32 Aligned_cols=151 Identities=14% Similarity=0.116 Sum_probs=102.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-------------Ch------
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-------------DY------ 65 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-------------~~------ 65 (159)
..+.|+.+.|++-|+...+-+--.+...||..+..| +.++++.|+++..+..+.|++. |.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 357899999999999877654333677888777654 6678999999999999887542 11
Q ss_pred hh--HHHHHHH-------HHccChHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 039637 66 NT--FHILIKY-------FCKEKMYMLAYRTMVDMH-RKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK 135 (159)
Q Consensus 66 ~~--~~~ll~~-------~~~~~~~~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 135 (159)
.+ -+.++.+ +.+.|+++.|.+.+-.|- +.....|+.|...+.-. ...+++-+..+-+.-+.... |...
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ 310 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPP 310 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCCh
Confidence 11 1233333 456788888888777775 33345677777655422 22344444444455444433 3566
Q ss_pred HHHHHHHHHHHhcCcHHHHhhhh
Q 039637 136 ALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.||..++-.|||+.-++.|-+++
T Consensus 311 ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHH
Confidence 79999999999999999988775
No 128
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.12 E-value=0.00061 Score=51.25 Aligned_cols=149 Identities=11% Similarity=0.017 Sum_probs=93.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
+-..|++..|..++....+..+. +...|-.-+..-.++..++.|..+|.+... ..|+...|.-=++.---.+..++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 34557777777777777666555 667777777777777777777777776665 345555554333333334555555
Q ss_pred HHHHHHHHHc------------------------------C--CCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 039637 85 YRTMVDMHRK------------------------------G--HQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR 131 (159)
Q Consensus 85 ~~~~~~m~~~------------------------------g--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 131 (159)
++++++.++. | ..| .+..|-.|...=.+.|++-.|..++++....+
T Consensus 671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 5555444321 1 223 34455555555566677778888887776543
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 132 SMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
|-+...|...|++=.+.|..+.|..+
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 33566788888888888888887654
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=0.00014 Score=56.88 Aligned_cols=59 Identities=8% Similarity=0.062 Sum_probs=34.4
Q ss_pred hHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 67 TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
.+..+..+|-+.|+.+++..+++++++.. +-|+.+.|.+...|... ++++|..++.+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44445555555666666666666666554 33555666666666666 6666666555443
No 130
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00035 Score=51.59 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=98.4
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHH--HHHHH--Hc
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHI--LIKYF--CK 77 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--ll~~~--~~ 77 (159)
++.+.+.+++++|.+..+.+...++. |...+.+-+-+..+.+++++|+.+.+.-.. ..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 45677889999999999999987754 677777788888999999999966544221 112221 23444 46
Q ss_pred cChHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC------------------------
Q 039637 78 EKMYMLAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS------------------------ 132 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------------------------ 132 (159)
.+..++|+..+. |..+ +..+...-...+.+.|++++|..+|+.+..++.+
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 788888888877 3333 3335666677788889999999999888544321
Q ss_pred ---CCHHHHHHH---HHHHHhcCcHHHHhhhh
Q 039637 133 ---MCKALHEKI---LHILISGKLLKDAYIVV 158 (159)
Q Consensus 133 ---~~~~~~~~l---~~~~~~~g~~~~A~~~~ 158 (159)
....+|..+ ...++..|++.+|++++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 011133333 35567788888888876
No 131
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.12 E-value=5.1e-05 Score=40.93 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=46.7
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN 66 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 66 (159)
-+.|.+.+++++|.++++.+.+.++. ++..|......+.+.|++.+|.+.|++..+. .|+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcH
Confidence 45677888888888888888877665 7777777888888888888888888887764 35443
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.09 E-value=0.00027 Score=43.89 Aligned_cols=88 Identities=6% Similarity=-0.070 Sum_probs=61.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
+...|++++|..+|+.+....+. +..-|-.|.-++-..|++++|+..|........ -|...+..+-.++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 45667777777777777766554 666666777777777777777777777776442 3456666677777777777777
Q ss_pred HHHHHHHHHc
Q 039637 85 YRTMVDMHRK 94 (159)
Q Consensus 85 ~~~~~~m~~~ 94 (159)
++.|+.....
T Consensus 123 ~~aF~~Ai~~ 132 (157)
T PRK15363 123 IKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHH
Confidence 7777766653
No 133
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.09 E-value=0.00053 Score=55.38 Aligned_cols=120 Identities=13% Similarity=0.016 Sum_probs=60.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC-CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC
Q 039637 4 AFCRSGCFEETKQLAGDFEAKY-DK---YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~-~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 79 (159)
-..+.++.++|.+++++....- +. --...|.++++.-..-|.-+...++|++..+ ..-....|..|...|.+.+
T Consensus 1467 f~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~~~L~~iy~k~e 1544 (1710)
T KOG1070|consen 1467 FHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVHLKLLGIYEKSE 1544 (1710)
T ss_pred HHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHhh
Confidence 3455566666666666655331 10 0123455555555555555555555555554 2233344555555555555
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (159)
.+++|.++++.|.+.= .-....|...+..+.++.+-+.|..++++.
T Consensus 1545 k~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1545 KNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred cchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5555656655555431 123344555555555555544444444433
No 134
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.09 E-value=0.00038 Score=54.10 Aligned_cols=119 Identities=11% Similarity=0.015 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC--hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSL 106 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (159)
|+.+.+.|.+.|.-.|+++.|.++...+......-. ...|-.+-++|-..|++++|..+|.+-.+....-....+--+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 555566666666666666666666666665432111 233555666666667777776666655543211112233345
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039637 107 IFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (159)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (159)
...|.+.|+++.+...|+.+... .+-+..+...+-..|...
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHS 389 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhh
Confidence 66666667777777766666642 222334444444444443
No 135
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.07 E-value=0.001 Score=49.62 Aligned_cols=130 Identities=8% Similarity=-0.134 Sum_probs=85.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHcc--------ChHHHHHHHHHH
Q 039637 25 YDKYDVVLLNSMLCAYCRTG-----DMESVMHVMRKLDELAISPDY-NTFHILIKYFCKE--------KMYMLAYRTMVD 90 (159)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~ 90 (159)
+.+.|...|...+++..... +...|.++|++..+ ..|+- ..|..+..++... .++..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45568888888888755422 36678889988888 45763 3444433333222 123333444443
Q ss_pred HHHc-CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 91 MHRK-GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 91 m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.... ....++.+|.++.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3332 233455677777666667799999999999888654 57778888889999999999888765
No 136
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=0.00063 Score=49.38 Aligned_cols=148 Identities=12% Similarity=0.021 Sum_probs=102.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAY 85 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 85 (159)
.+++++..|..+|++.+..=|. -...|-..+..=-..|+...|.++|.+=.+ ..|+...|.+.++.-.+-+.++.|.
T Consensus 118 mknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR 194 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERAR 194 (677)
T ss_pred HhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHH
Confidence 4567777788888777653222 123555555555567888888888877665 5788888888888888888888888
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS--KRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+++..+- +.|++..|--....=.++|++..|..+|+..... +...+...+.++...=.+++.++.|..+|
T Consensus 195 ~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iy 267 (677)
T KOG1915|consen 195 SIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIY 267 (677)
T ss_pred HHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887774 4588888888888888888888888888866542 22223445556666656666666666554
No 137
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.0002 Score=48.67 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=72.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 83 (159)
..+.+++++|+..|...++..+. |.+-|..-..+|++.|.++.|.+=-+..++ +.|. ..+|..|-.+|...|++.+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 45678888888888888877665 777788888888888888888777666665 4454 4678888888888888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
|.+.|...++ +.|+-.+|..=+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 8888877765 4566556644433
No 138
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.05 E-value=0.00021 Score=45.24 Aligned_cols=86 Identities=9% Similarity=-0.072 Sum_probs=62.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHH---
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKY--DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFC--- 76 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~--- 76 (159)
..+...|++++|...|+......+.+ ...+|..+...+...|++++|+..+.+.... .|+ ..++..+...+.
T Consensus 43 ~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhh
Confidence 34567899999999999987654332 2358899999999999999999999998874 343 455666666666
Q ss_pred ----ccChHHHHHHHHHH
Q 039637 77 ----KEKMYMLAYRTMVD 90 (159)
Q Consensus 77 ----~~~~~~~a~~~~~~ 90 (159)
..|+++.|+..+.+
T Consensus 121 ~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 121 EQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHcccHHHHHHHHHH
Confidence 56666655444443
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.04 E-value=0.00062 Score=43.26 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=59.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccCh
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKM 80 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 80 (159)
.+...|++++|...|++..+..+.++ ...+..+...+.+.|++++|...+.+..+. .|+ ...+..+..++...|+
T Consensus 44 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 44 SAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCC
Confidence 56778999999999999887654432 468899999999999999999999998874 353 4556666667777665
No 140
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.03 E-value=3.3e-05 Score=47.67 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHH-----HcCCCCcHHHHH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMH-----RKGHQPEEELCS 104 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~g~~~~~~~~~ 104 (159)
.+...++..+...|++++|..+...+.... +.+...|..+|.++...|+...|.++|+++. +.|+.|++.+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 466778888889999999999999998853 3467889999999999999999999998875 358888876654
No 141
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00043 Score=48.50 Aligned_cols=149 Identities=11% Similarity=0.041 Sum_probs=91.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG-------DMESVMHVMRKLDELAISPDY-NTFHILIKYF 75 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~ 75 (159)
-|.+.+++.+|..+.+.+. |. ++.-|-.-.-.+++.| ..+-|...|.-.-+++..-|+ .--..+.+++
T Consensus 294 YyL~q~dVqeA~~L~Kdl~---Pt-tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLD---PT-TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eecccccHHHHHHHHhhcC---CC-ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 4678899999988865553 22 3433332222233333 344566666665555554433 3344566666
Q ss_pred HccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCcHHHH
Q 039637 76 CKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHE-KILHILISGKLLKDA 154 (159)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A 154 (159)
.-..++++++-+++.+...-..-|.+-+ .+..+++..|+..+|+++|-.+....++ +..+|. .+.++|++.+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 6677778888777777765433344444 3677778888888888888776654444 445554 445778888887777
Q ss_pred hhhh
Q 039637 155 YIVV 158 (159)
Q Consensus 155 ~~~~ 158 (159)
.+++
T Consensus 448 W~~~ 451 (557)
T KOG3785|consen 448 WDMM 451 (557)
T ss_pred HHHH
Confidence 7664
No 142
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00022 Score=52.39 Aligned_cols=143 Identities=11% Similarity=0.041 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHH
Q 039637 9 GCFEETKQLAGDFEAK-YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYR 86 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~ 86 (159)
..+....+.|-.+... +.++|+.+...|--.|.-.|+++.|.+.|+..+. ++|+ ..+||.|-..++...+..+|+.
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIs 485 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAIS 485 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHH
Confidence 3445566666665544 3347888888888888899999999999998887 5675 5778888888888888899999
Q ss_pred HHHHHHHcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHH---hC------CCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 87 TMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLR---YS------KRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 87 ~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~------~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
.|.+.++. .|+ +.+.-.|.-.|...|.+++|...|-... .. ...++..+|..|=.++...++.|.+.
T Consensus 486 AY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 486 AYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 99988875 454 2333446667888888888887765332 22 12234566666666666666666443
No 143
>PLN02789 farnesyltranstransferase
Probab=97.98 E-value=0.0022 Score=44.92 Aligned_cols=141 Identities=9% Similarity=-0.004 Sum_probs=103.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH-
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY- 81 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~- 81 (159)
.+...++.++|+...+...+..+. +..+|+..-.++...| +++++++.++++.+..- .+..+|+..-..+.+.++.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchh
Confidence 345567889999999998886655 6667877777777777 68999999999988542 3445676555455555553
Q ss_pred -HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039637 82 -MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (159)
Q Consensus 82 -~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (159)
+++..+++.+.+.. +-+..+|+-....+...|++++++..++++.+.+.. +..+|+.....+.+.
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 67788888888764 357889998888899999999999999999876544 445565555444443
No 144
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.98 E-value=0.0014 Score=48.31 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHH
Q 039637 10 CFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTM 88 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (159)
+.+...+.++++...-..--+.+|..+|+.--|..-.+.|..+|.+..+.+..+ .+...++++..+|. ++..-|.++|
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 345555566655543222234578888888888888999999999999988877 67778888888876 6778888888
Q ss_pred HHHHHcCCCCcHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCcHHHHhhh
Q 039637 89 VDMHRKGHQPEEELC-SSLIFHLGKMRAHSEALSVYNMLRYSKRSMC--KALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 89 ~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
+-=++. .+|...| ...++.+...++-..|..+|++....+.+|+ ..+|..++..=..-|++..+.++
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 765443 2333333 5788888889999999999999987755544 56899999999999998887765
No 145
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.97 E-value=0.00067 Score=41.83 Aligned_cols=70 Identities=20% Similarity=0.125 Sum_probs=52.8
Q ss_pred hHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 039637 67 TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR-----YSKRSMCKAL 137 (159)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~ 137 (159)
+...++..+...|++++|..+...+.... +.+...|..+|.+|...|+...|.++|+.+. .-|++|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34566677788999999999999999864 4688899999999999999999999998775 2488999876
No 146
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0016 Score=46.63 Aligned_cols=148 Identities=6% Similarity=-0.043 Sum_probs=89.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHH-HHHHcc-ChHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILI-KYFCKE-KMYM 82 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~~~-~~~~ 82 (159)
+...|++++|.-.|+..+...|. +..+|.-|+..|...|++.+|.-+-++.... +.-+..+.+.+- ..|.-. .--+
T Consensus 344 L~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 44556667777676666554332 5667777777777777777765555443332 222334444321 122211 2224
Q ss_pred HHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|.++++.-++. .|+ ...-+.+...+...|..+.+..++++... .-||....+.+-+.+...+.+.+|++-|
T Consensus 422 KAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 422 KAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 555555554442 343 33456667778888888899988887764 3467778888888888888888887754
No 147
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.91 E-value=0.00039 Score=52.52 Aligned_cols=152 Identities=10% Similarity=-0.007 Sum_probs=94.9
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH----------------------------H
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHV----------------------------M 53 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----------------------------~ 53 (159)
|-.|+..|+..+|.++.....+ -+||+..|..+.+..-...-+++|.++ |
T Consensus 431 i~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHL 508 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHH
Confidence 4567777888888777766665 245667776666654443334444444 4
Q ss_pred HHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 039637 54 RKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM 133 (159)
Q Consensus 54 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 133 (159)
+.-.+.. .....+|-.+--+..+.+++..+.+.|..-... -+-+...||.+-.+|.+.++-.+|...+++..+-+ .-
T Consensus 509 e~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~ 585 (777)
T KOG1128|consen 509 ERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQ 585 (777)
T ss_pred HHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CC
Confidence 3332211 112355555555556667777777777666543 22355678888888888888888888887776655 34
Q ss_pred CHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 134 CKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+..+|..-+....+.|.+++|.+.+
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHH
Confidence 5556667777777778887777654
No 148
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.88 E-value=0.00066 Score=40.88 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
|..++..+|.++++.|+.+....+.+..-. +.++...-. +. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~~~---------~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKKKE---------GD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcccc---------Cc---------cCCCCCCCCCHHHHHHHHH
Confidence 345667777777777777777666654332 222110000 00 0012234566777777777
Q ss_pred HHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 039637 109 HLGKMRAHSEALSVYNMLRY-SKRSMCKALHEKILHILIS 147 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 147 (159)
+|+..|++..|.++.+.... -+++.+..+|..|++....
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777776553 3566666677776655443
No 149
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.88 E-value=0.00095 Score=39.83 Aligned_cols=108 Identities=13% Similarity=0.008 Sum_probs=78.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhcCCCCC--hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHH
Q 039637 36 MLCAYCRTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQ--PEEELCSSLIFHLG 111 (159)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~ 111 (159)
+..++-..|+.++|+.+|.+....|+... ...+-.+-+.+...|++++|..++++....... .+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566678999999999999999887665 345566778889999999999999988865211 12233334455677
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039637 112 KMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (159)
Q Consensus 112 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (159)
..|+.++|...+-.... ++..-|..-|..|..
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 88999999998876554 244477777777754
No 150
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.85 E-value=0.00016 Score=38.33 Aligned_cols=51 Identities=18% Similarity=0.008 Sum_probs=30.0
Q ss_pred ccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 77 KEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..|++++|+++++++.... +-+....-.+..+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666666666542 22455555666666666666666666666554
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=0.0022 Score=47.82 Aligned_cols=118 Identities=8% Similarity=-0.093 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHhHhc-CCCCChhhHHHHHHHHHccC
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG--------DMESVMHVMRKLDEL-AISPDYNTFHILIKYFCKEK 79 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~ 79 (159)
++.++|.++|++..+..|. ....|..+..++.... +...+.+...+.... ....+...|.++--.....|
T Consensus 356 ~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 3477999999999987655 5566666555544321 123344444443332 12334567777766666789
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
++++|...+++..... |+...|..+...+...|+.++|...+++....
T Consensus 435 ~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 435 KTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred CHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999875 68889999999999999999999999887654
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.84 E-value=0.00031 Score=37.34 Aligned_cols=62 Identities=19% Similarity=0.190 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccC-hHHHHHHHHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEK-MYMLAYRTMVDMHR 93 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~ 93 (159)
..+|..+...+.+.|++++|+..|.+..+. .| +...|..+-.++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555555555555555555555555553 23 2344455555555555 45555555555443
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.83 E-value=0.002 Score=45.07 Aligned_cols=100 Identities=12% Similarity=0.068 Sum_probs=49.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 039637 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (159)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (159)
-|.-+...|+...|..+-++.+ .|+..-|-..+.+++..++|++..++-.. . -++..|..++..|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCC
Confidence 3444445555555555544332 25555555555666655555554443221 1 123455555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 116 HSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
..+|..+..++. + ..-+..|++.|++.+|.
T Consensus 253 ~~eA~~yI~k~~------~----~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 253 KKEASKYIPKIP------D----EERVEMYLKCGDYKEAA 282 (319)
T ss_pred HHHHHHHHHhCC------h----HHHHHHHHHCCCHHHHH
Confidence 555555554411 1 23445555555555554
No 154
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0017 Score=47.88 Aligned_cols=116 Identities=17% Similarity=0.042 Sum_probs=83.1
Q ss_pred HHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHc----C--CCCcHHHHHHHHHHHHc
Q 039637 40 YCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRK----G--HQPEEELCSSLIFHLGK 112 (159)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g--~~~~~~~~~~li~~~~~ 112 (159)
|.+.+..+-|...|.+... +.|+ +...+-+--.....+.+.+|..+|+..+.. + ......+++.|...|.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 3444555555666555444 4454 344454444455567888999888877621 1 11245578899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 113 MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 113 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+..++|+..+++... -.+.+..+|.++.-.|...|+++.|.+.|
T Consensus 468 l~~~~eAI~~~q~aL~-l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALL-LSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HhhHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999999998876 44668889999999999999999998876
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.80 E-value=0.002 Score=38.50 Aligned_cols=103 Identities=14% Similarity=-0.017 Sum_probs=73.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC---hhhHH-HHHHHHHc
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD---YNTFH-ILIKYFCK 77 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~-~ll~~~~~ 77 (159)
++-..|+.++|..+|+...+.|...+ ...+-.+...+...|++++|..+|++..... |+ ..... .+.-++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 45667999999999999998887644 3456667778888999999999999888742 44 22222 22345677
Q ss_pred cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 039637 78 EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (159)
.|+.++|..++-.... ++...|..-|..|..
T Consensus 88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 8999999988876654 344477766666653
No 156
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.80 E-value=0.0013 Score=44.70 Aligned_cols=97 Identities=9% Similarity=-0.003 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh----hhHHHHHHHHHccChHHHHHHHHHHHHHcC--CCCcHHHHH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY----NTFHILIKYFCKEKMYMLAYRTMVDMHRKG--HQPEEELCS 104 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~ 104 (159)
..|+..+....+.|++++|...|+...+. -|+. ..+-.+..+|...|++++|...|..+.+.- .+.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45666666667789999999999999985 3543 466678888999999999999999998642 112344555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
.+...+...|+.++|..+|+.+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677788899999999999988863
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.00054 Score=47.13 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=94.5
Q ss_pred HHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc----CCCCC--hhhHHHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEA----KYDK-YDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISPD--YNTFHILI 72 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll 72 (159)
.|-..|++++|.+.|.+.-. .+-. .-...|......|.+. ++++|.+.+.+.... |- |+ ...+..+-
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~-~~~aA~~~~~lA 121 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR-FSQAAKCLKELA 121 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHH
Confidence 45566778888777776421 1211 1223455555555444 888888888776642 32 33 34666777
Q ss_pred HHHHcc-ChHHHHHHHHHHHHH----cCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----CCCH-HHHHH
Q 039637 73 KYFCKE-KMYMLAYRTMVDMHR----KGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR-----SMCK-ALHEK 140 (159)
Q Consensus 73 ~~~~~~-~~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~-~~~~~ 140 (159)
..|... |++++|.+.|.+..+ .|.+. -...+..+...+.+.|++++|..+|+++..... ..+. ..+-.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 888888 899999999988764 23211 234667888999999999999999998875322 1222 13344
Q ss_pred HHHHHHhcCcHHHHhhhh
Q 039637 141 ILHILISGKLLKDAYIVV 158 (159)
Q Consensus 141 l~~~~~~~g~~~~A~~~~ 158 (159)
.+-++...|+...|...|
T Consensus 202 a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 455777788888887655
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.79 E-value=0.00033 Score=36.84 Aligned_cols=55 Identities=16% Similarity=0.040 Sum_probs=33.3
Q ss_pred HHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..+...|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|++...
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666553 22555666666666666666666666666553
No 159
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.78 E-value=0.0066 Score=47.21 Aligned_cols=149 Identities=16% Similarity=0.121 Sum_probs=80.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAY 85 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 85 (159)
.+.|+.++|..+++.....+.. |..+...+-..|.+.++.++|..+|++..+ ..|+..-...+..+|.+.+.+.+-.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555554 666666666677777777777777766655 3466555666666666666665544
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccC----------CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCcHHHH
Q 039637 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMR----------AHSEALSVYNMLRYSK-RSMCKALHEKILHILISGKLLKDA 154 (159)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 154 (159)
+.--+|-+. .+-++..|.++++.+.+.- -..-|.+.++.+...+ .--+..-...-...+-..|.+++|
T Consensus 131 kaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 444444332 2334455555555554331 1223445555555433 111222222233444556667777
Q ss_pred hhhh
Q 039637 155 YIVV 158 (159)
Q Consensus 155 ~~~~ 158 (159)
.+++
T Consensus 210 l~~l 213 (932)
T KOG2053|consen 210 LEFL 213 (932)
T ss_pred HHHH
Confidence 6664
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.77 E-value=0.00042 Score=36.86 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=53.5
Q ss_pred ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC-CHHHHHHHHHHHHh
Q 039637 64 DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRY 128 (159)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 128 (159)
+..+|..+-..+...|++++|+..|.+..+.. +.++..+..+..+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34677888888999999999999999998874 346778888999999999 79999999987764
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.77 E-value=0.0015 Score=44.54 Aligned_cols=87 Identities=8% Similarity=-0.046 Sum_probs=70.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC----hhhHHHHHHHHHccC
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYD--VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCKEK 79 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~ 79 (159)
.+.|++++|...|+.+.+..|... ...+-.+..+|...|++++|...|..+.+.- |+ ...+-.+..++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHHHHHHHHHHHcC
Confidence 557999999999999998765422 4678888999999999999999999998742 33 344555667788899
Q ss_pred hHHHHHHHHHHHHHc
Q 039637 80 MYMLAYRTMVDMHRK 94 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~ 94 (159)
+.++|..+++.+.+.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999875
No 162
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.76 E-value=0.0028 Score=49.93 Aligned_cols=139 Identities=8% Similarity=0.058 Sum_probs=82.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHH---HH--c
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY---FC--K 77 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~--~ 77 (159)
.+|-+.|+.++|.++|+++.+..+. |+.+.|.+...|+.. +.++|.+++.+.+..- .+..-|+.+... ++ .
T Consensus 124 ~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~--i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 124 EAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF--IKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH--HhhhcchHHHHHHHHHHhcC
Confidence 4566678888888888888877755 778888888888887 8888888877776641 111122222211 11 1
Q ss_pred cChHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039637 78 EKMYMLAYRTMVDMHRK-GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (159)
..+.+.-..+.+.+... |..--+.++..+-..|-+.++++++..+++.+.+.... |.....-++.+|.
T Consensus 200 ~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 200 SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 12222333333333322 22223445555667777888899999999988875444 4445555555554
No 163
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.75 E-value=0.0049 Score=49.10 Aligned_cols=155 Identities=14% Similarity=-0.001 Sum_probs=102.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCC---CC--hhhHHHHHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVMHVMRKLDELAIS---PD--YNTFHILIKY 74 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~~--~~~~~~ll~~ 74 (159)
.+...|++++|...++...+.-...+. ...+.+...+...|++++|...+.+.....-. +. ..+...+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 345789999999999887653222222 34566667778899999999999887753111 11 2344455667
Q ss_pred HHccChHHHHHHHHHHHHHc----CCC--C-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHH
Q 039637 75 FCKEKMYMLAYRTMVDMHRK----GHQ--P-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS--KRSM--CKALHEKILH 143 (159)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~ 143 (159)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 78899999999998876642 221 1 2233445566677789999999998876532 1112 2334455667
Q ss_pred HHHhcCcHHHHhhhh
Q 039637 144 ILISGKLLKDAYIVV 158 (159)
Q Consensus 144 ~~~~~g~~~~A~~~~ 158 (159)
.+...|+.++|.+.+
T Consensus 621 ~~~~~G~~~~A~~~l 635 (903)
T PRK04841 621 ISLARGDLDNARRYL 635 (903)
T ss_pred HHHHcCCHHHHHHHH
Confidence 888899999887654
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0017 Score=44.34 Aligned_cols=100 Identities=11% Similarity=0.009 Sum_probs=79.4
Q ss_pred HHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHH
Q 039637 39 AYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117 (159)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 117 (159)
-..+.+++++|+..|.+.++ +.|+ .+-|..-..+|++.|.++.|++-.+..+.-. +....+|..|-.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 35678899999999999988 5665 4556677888999999999988887777653 235679999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039637 118 EALSVYNMLRYSKRSMCKALHEKILH 143 (159)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (159)
+|...|++... +.|+..+|-.=+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 99999998874 5667666654443
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.73 E-value=0.0041 Score=39.97 Aligned_cols=126 Identities=12% Similarity=-0.005 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcC---CCCcHHH
Q 039637 26 DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG---HQPEEEL 102 (159)
Q Consensus 26 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~ 102 (159)
..|++...-.|.++..+.|+..+|...|.+...-=..-|....-.+.++....+++..|...++.+.+.. .+|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 4577777888889999999999999999887764345567777778888888899999999998888753 3344 4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 103 CSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
.-.+.+.|...|..+.|..-|+...+. -|+...-..--.++.+.|+.++|.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 456778888889999999999887753 455555555566778888777664
No 166
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.71 E-value=0.0022 Score=38.59 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=57.4
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
+|.++++.|+++....+++.. .|+.++. -...+. --....+.|+..+..+++.+|+..++
T Consensus 8 ii~al~r~g~~~~i~~~i~~~--WgI~~~~---------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~~ 67 (126)
T PF12921_consen 8 IIYALGRSGQLDSIKSYIKSV--WGIDVNG---------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNGD 67 (126)
T ss_pred HHHHHhhcCCHHHHHHHHHHh--cCCCCCC---------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHhccc
Confidence 367889999999998888654 2333221 000111 22234456777777777777777777
Q ss_pred HHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHcc
Q 039637 81 YMLAYRTMVDMHR-KGHQPEEELCSSLIFHLGKM 113 (159)
Q Consensus 81 ~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~ 113 (159)
+..|.++.+...+ .+++.+..+|..|+......
T Consensus 68 i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 68 IFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 7777777776664 35555666777776665544
No 167
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.70 E-value=0.0053 Score=45.39 Aligned_cols=146 Identities=9% Similarity=0.008 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHH
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYC---RTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 87 (159)
-+++..+++.....-...+..+|..+.+-=- +..+.+.....++++...-..--+-+|...++.-.+..-+..|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455566655543322234444444443221 1223677788888877653333345777889998888889999999
Q ss_pred HHHHHHcCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 88 MVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNML-RYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 88 ~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
|.+..+.+..+ ++.+.++++..|| .++.+.|.++|+-- +..|. ++.--...+..+...++-..|..+|+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFE 459 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFE 459 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHH
Confidence 99999988877 7778888888776 57889999999944 44332 33444677888888888887777764
No 168
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.69 E-value=0.003 Score=48.00 Aligned_cols=143 Identities=12% Similarity=0.076 Sum_probs=106.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+.+.|-...|..+|+++. -|...+.+|+..|+..+|..+..+..+ -+|+...|..+.+......-++
T Consensus 406 ell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 45677888888888887665 366779999999999999999988877 3577888877777765555555
Q ss_pred HHHHHHHHH----------------------------HHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 039637 83 LAYRTMVDM----------------------------HRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC 134 (159)
Q Consensus 83 ~a~~~~~~m----------------------------~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 134 (159)
+|+++.+.. .+.. +....+|-.+--+..+.+++..|.+.|..-.. ..+-+
T Consensus 475 kawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt-L~Pd~ 552 (777)
T KOG1128|consen 475 KAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT-LEPDN 552 (777)
T ss_pred HHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-cCCCc
Confidence 555555433 2211 12345666666666778899999999987774 44556
Q ss_pred HHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 135 KALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
...||.+-.+|.+.|+-.+|...+
T Consensus 553 ~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 553 AEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred hhhhhhhhHHHHHHhhhHHHHHHH
Confidence 788999999999999999988765
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.69 E-value=0.00094 Score=46.70 Aligned_cols=106 Identities=11% Similarity=-0.011 Sum_probs=76.2
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
|.-+...|+...|.++-..+. .|+..-|-..+.++++.++|++...+-.. +-++.-|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 345667788888877765554 46888888888888888888877765322 23458888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
.+|..+... + .+..-+..|.++|++.+|.+.--+.+
T Consensus 254 ~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 254 KEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 888877766 2 12456777888888888877654443
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0073 Score=41.34 Aligned_cols=115 Identities=14% Similarity=0.014 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHcc---ChHHHHHHH
Q 039637 12 EETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKE---KMYMLAYRT 87 (159)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~---~~~~~a~~~ 87 (159)
+....-++.=...++. |...|-.|..+|...|++..|..-|.+..+ +.| |...+..+-.++..+ .+..++..+
T Consensus 139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3333334433444555 899999999999999999999999999887 334 445555555554333 456789999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 039637 88 MVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (159)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 130 (159)
++++++.. +-|+.+...|...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99999875 3578888888999999999999999999999754
No 171
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.011 Score=42.62 Aligned_cols=148 Identities=12% Similarity=0.073 Sum_probs=90.3
Q ss_pred HhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh----hhHHHHHHH------
Q 039637 6 CRSGCFEETKQLAGDFEAKY-DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY----NTFHILIKY------ 74 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~------ 74 (159)
+-.++...|.+.+-.+.... +.-|+.....+...+...|+.++|...|++... +.|+. ..|..|+.-
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhh
Confidence 33455555555554444333 334677778888888888888888888887765 33432 223322221
Q ss_pred -------------------------HHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 75 -------------------------FCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 75 -------------------------~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
....++++.|+.+-++-.+.. +-+...+-.-...+...|++++|.=-|+..+.
T Consensus 285 ~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~- 362 (564)
T KOG1174|consen 285 DSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM- 362 (564)
T ss_pred HHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh-
Confidence 112234444444444444332 12334444344566777889999888887764
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 130 KRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
--|-+...|.-++++|...|.+.+|..+
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 2234678999999999999999998753
No 172
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.62 E-value=0.0048 Score=37.76 Aligned_cols=124 Identities=13% Similarity=0.088 Sum_probs=89.0
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
+..+.+.+.+.....+++.+...+. .+...+|.++..|++.+ ..+.++.+.. ..+......+++.|.+.+.+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 5677778899999999999988875 58889999999999764 4555566553 24455666788889998999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKM-RAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (159)
+++..++..+.. . ...+..+... ++++.|.+++.+- .+...|..++..+...
T Consensus 86 ~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~~ 138 (140)
T smart00299 86 EEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLDK 138 (140)
T ss_pred HHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHcc
Confidence 888888876632 2 2233333334 8899999888752 2566888888777653
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.61 E-value=0.0065 Score=39.06 Aligned_cols=122 Identities=13% Similarity=0.038 Sum_probs=95.9
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-CCChhhHHHHHHHHHccCh
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~ 80 (159)
-++..+.|+..+|...|.+-..--+.-|....-.+.++....+++..|...++.+.+... ..++.+.-.+-..+...|+
T Consensus 96 a~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~ 175 (251)
T COG4700 96 ANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK 175 (251)
T ss_pred HHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC
Confidence 356788899999999999887655667888888999999999999999999999887531 1123455567788999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (159)
+..|+.-|+..... -|+...--.....+.++|+.+++..-+..
T Consensus 176 ~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 176 YADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred chhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 99999999999874 57766666677778889988777654433
No 174
>PLN02789 farnesyltranstransferase
Probab=97.60 E-value=0.011 Score=41.52 Aligned_cols=134 Identities=9% Similarity=0.030 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHH
Q 039637 10 CFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM--ESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 87 (159)
+++++++.++.+.+.+++ +..+|+..-..+.+.|+. ++++++++++.+.. .-|..+|+....++...|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 467788888777776655 666676555555555542 56677777777643 23567777777777777778888888
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHcc---CC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039637 88 MVDMHRKGHQPEEELCSSLIFHLGKM---RA----HSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (159)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~---g~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (159)
+.++++.+. -+..+|+.....+.+. |. .+++..+..+.... .+-+...|+.+...+..
T Consensus 165 ~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 165 CHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhc
Confidence 887777653 3445555444333332 22 23455555444432 22344455555555544
No 175
>PRK15331 chaperone protein SicA; Provisional
Probab=97.59 E-value=0.0022 Score=40.16 Aligned_cols=88 Identities=10% Similarity=-0.058 Sum_probs=48.1
Q ss_pred HHHHhcCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH
Q 039637 38 CAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (159)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (159)
--+...|++++|..+|.-+...+ |.. .-|..|-.++-..+++++|...|......+. -|+..+--...+|...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 33445666777777776665532 222 2233344445555667777766665554332 2222333355666666777
Q ss_pred HHHHHHHHHHHh
Q 039637 117 SEALSVYNMLRY 128 (159)
Q Consensus 117 ~~a~~~~~~~~~ 128 (159)
+.|...|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777777666654
No 176
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.59 E-value=0.0036 Score=45.37 Aligned_cols=64 Identities=8% Similarity=0.001 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh----hHHHHHHHHHccChHHHHHHHHHHHHHc
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN----TFHILIKYFCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (159)
+...|+.+..+|.+.|++++|+..|++..+ +.|+.. +|..+-.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999887 467743 5788999999999999999999888874
No 177
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.001 Score=46.74 Aligned_cols=121 Identities=16% Similarity=0.161 Sum_probs=72.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHH-HHHHHHHccChHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFH-ILIKYFCKEKMYML 83 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~ 83 (159)
+.-..++++++-.++.++..=..-|...+ .+..+++..|.+.+|+++|-......+ .|..+|. .|.++|.++++++.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchH
Confidence 33445566666666666544333233222 467788888888888888866554333 3455665 45577888888887
Q ss_pred HHHHHHHHHHcCCCCcHHH-HHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 039637 84 AYRTMVDMHRKGHQPEEEL-CSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~ 130 (159)
|++++-.+ .-+.+... ...+..-|.+.+.+--|.+.|+.+...+
T Consensus 447 AW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 447 AWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 77665433 22223332 3444566777787777777777766443
No 178
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.56 E-value=0.0008 Score=51.53 Aligned_cols=78 Identities=12% Similarity=0.181 Sum_probs=50.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
.+-...+.|.+|+.+++.+...+. -..-|.-+.+.|+..|+++-|.++|-+. ..++-.|..|.+.|+|.
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 345566777777777777765432 2234666777777888888888777542 24555667777777777
Q ss_pred HHHHHHHHH
Q 039637 83 LAYRTMVDM 91 (159)
Q Consensus 83 ~a~~~~~~m 91 (159)
.|.++-.+.
T Consensus 809 da~kla~e~ 817 (1636)
T KOG3616|consen 809 DAFKLAEEC 817 (1636)
T ss_pred HHHHHHHHh
Confidence 776665544
No 179
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.54 E-value=0.0074 Score=46.22 Aligned_cols=121 Identities=14% Similarity=0.046 Sum_probs=86.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 81 (159)
..+.+.++.++|.-.+.+..+-.+ .....|......+...|.+.+|.+.|..... +.|+ +.+.+.+-.++.+.|+.
T Consensus 658 ~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 658 DLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSP 734 (799)
T ss_pred HHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCc
Confidence 345666777777766666554332 3666777777777778888888888877766 4565 46667777888888877
Q ss_pred HHHHH--HHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 82 MLAYR--TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 82 ~~a~~--~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
.-+.. ++..+.+.+ +.++..|..+...+-+.|+.+.|...|+...
T Consensus 735 ~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred chHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 76666 778887765 3577788888888888888888888887554
No 180
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.53 E-value=0.00076 Score=36.80 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcC--CC---CC-hhhHHHHHHHHHccChHHHHHHHHHHHH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELA--IS---PD-YNTFHILIKYFCKEKMYMLAYRTMVDMH 92 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~---~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (159)
.+|+.+...|.+.|++++|++.|++..+.. .. |. ..++..+-.++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355566666666666666666666555320 11 11 2344455555555566666665555443
No 181
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.51 E-value=0.0037 Score=49.26 Aligned_cols=148 Identities=11% Similarity=-0.002 Sum_probs=98.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHH--HHHHHHHccCh
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFH--ILIKYFCKEKM 80 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~--~ll~~~~~~~~ 80 (159)
.|+..-+..+|.+.|+...+.+.. +...+....+.|++..+++.|..+.-...+. .| -...++ ..--.|...++
T Consensus 501 iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~yyLea~n 577 (1238)
T KOG1127|consen 501 IYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGPYYLEAHN 577 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccccccCccc
Confidence 344445677788888777766554 6777888888888888888887773322221 11 112222 23333666777
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCcHHHHhhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKIL--HILISGKLLKDAYIVV 158 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~ 158 (159)
...+...|+...+.. +-|...|..+..+|.++|....|.++|++... .+|+. +|.... -.-+..|...+|.+.+
T Consensus 578 ~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred hhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 888888888877753 34778899999999999999999999988764 34443 344332 3455667777776543
No 182
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.50 E-value=0.022 Score=43.07 Aligned_cols=59 Identities=20% Similarity=0.102 Sum_probs=38.4
Q ss_pred CcHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 98 PEEELC--SSLIFHLGKMRAHSEALSVYNMLRYSKRSMC-KALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 98 ~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
|++..| -.++..|-+.|+++.|..+++....+ .|+ ...|..-.+.+...|++++|...+
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 444444 34566777778888888887776643 343 445666667777777777776654
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.49 E-value=0.015 Score=45.44 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=85.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAY--CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
....+++.+|++....+.+..|. ..|...+.++ .|.|+.++|..+++.....+.. |..|...+-.+|...++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 35678899999999988876433 2344444443 4889999999888887765543 7889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (159)
++..+|++..+. -|+......+.-+|.|.+.+.+-.++
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998865 46677777788888888877655544
No 184
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.48 E-value=0.0011 Score=35.65 Aligned_cols=54 Identities=15% Similarity=0.033 Sum_probs=28.3
Q ss_pred HHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 74 YFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.+.+.+++++|.++++.+...+ +.++..+.....++.+.|++++|...|+....
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555542 22444444555555555555555555555553
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0095 Score=40.39 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=91.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHH-----HHHccChHH
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIK-----YFCKEKMYM 82 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-----~~~~~~~~~ 82 (159)
.|.+.-....+++..+..++.++.....+++.-.+.||.+.|...|+...+..-+.|..+++.++. .+.-++++.
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 355666677788888877777899999999999999999999999997776555566666665543 345567788
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS 132 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 132 (159)
.+...+.++.+... -|+..-|.-.-+..-.|+..+|.++++.|......
T Consensus 270 ~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 270 EAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 88888887877642 35555555555556678999999999999865433
No 186
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.41 E-value=0.00056 Score=37.33 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHccChHHHHHHHHHHHHHc----CCC-Cc-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRK----GHQ-PE-EELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
.+++.+-..|...|++++|++.+++..+. |.. |+ ..++..+...|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788888999999999999999887743 211 22 5577888899999999999999988764
No 187
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.37 E-value=0.004 Score=42.55 Aligned_cols=90 Identities=18% Similarity=0.288 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC----------------hHHHHH
Q 039637 27 KYDVVLLNSMLCAYCRT-----GDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK----------------MYMLAY 85 (159)
Q Consensus 27 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 85 (159)
..|-.+|-..+..+... +..+-....++.|.+-|+..|..+|..||+.+-+.. .-+=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45777788888777653 456667778889999999999999999998875532 113468
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccCCH
Q 039637 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (159)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (159)
+++++|...|+.||..+-..|+.++++.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8999999999999999999999999998764
No 188
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.30 E-value=0.0076 Score=46.52 Aligned_cols=109 Identities=9% Similarity=0.079 Sum_probs=82.9
Q ss_pred HHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH
Q 039637 37 LCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (159)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (159)
+.+......|.+|+.+++.+.... ....-|..+.+-|+..|+++.|+++|-+- ..++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344556678888999988887643 33455677888999999999998887532 2466789999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 117 SEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+.|.++-++.. |.......|-+-..-+-+.|++.+|..++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 99998876654 55556667777788888888888887764
No 189
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.28 E-value=0.06 Score=43.08 Aligned_cols=154 Identities=10% Similarity=-0.120 Sum_probs=97.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC------CCCH--HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh----hhHHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYD------KYDV--VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY----NTFHILI 72 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~------~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll 72 (159)
+...|++++|...+....+.-. .+.. .....+...+...|++++|...+.+..+.--..+. ...+.+.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 4567899999998887654211 1111 12223334556789999999999887763111111 2334555
Q ss_pred HHHHccChHHHHHHHHHHHHHcCC---CCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCC--C-CHHHHHH
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRKGH---QPE--EELCSSLIFHLGKMRAHSEALSVYNMLRY----SKRS--M-CKALHEK 140 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~g~---~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~ 140 (159)
..+...|++++|...+.+...... .+. ..+...+...+...|+++.|...+++... .+.. + ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 667788999999999988774311 111 23445667778889999999999886553 2221 1 2233445
Q ss_pred HHHHHHhcCcHHHHhhhh
Q 039637 141 ILHILISGKLLKDAYIVV 158 (159)
Q Consensus 141 l~~~~~~~g~~~~A~~~~ 158 (159)
+...+...|++++|...+
T Consensus 579 la~~~~~~G~~~~A~~~~ 596 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCA 596 (903)
T ss_pred HHHHHHHhcCHHHHHHHH
Confidence 566777889999997654
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.24 E-value=0.024 Score=37.13 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=94.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh--hhHHHHHHHHHc--
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDK--YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY--NTFHILIKYFCK-- 77 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~-- 77 (159)
.+.+.|++.+|.+.|+.+....+. ......-.++.++.+.|++.+|...+++..+.- |+. .-+...+.+.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHH
Confidence 467889999999999999976543 234566677889999999999999999988752 432 222222222221
Q ss_pred -----------cChHHHHHHHHHHHHHcCCCCcH------------------HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 78 -----------EKMYMLAYRTMVDMHRKGHQPEE------------------ELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 78 -----------~~~~~~a~~~~~~m~~~g~~~~~------------------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.+...+|...|+.+++.- |++ ..--.+...|.+.|.+..|..-++.+..
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 123457788888887652 321 0011346778899999999999998886
Q ss_pred CCCCCC---HHHHHHHHHHHHhcCcHHHHh
Q 039637 129 SKRSMC---KALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 129 ~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 155 (159)
. .+-+ ......++.+|.+.|..+.|.
T Consensus 170 ~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 170 N-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp H-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred H-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3 2222 335567889999999887554
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.22 E-value=0.016 Score=40.01 Aligned_cols=141 Identities=14% Similarity=0.072 Sum_probs=89.6
Q ss_pred HhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhc-CChHHHHHHHHHhHhc----CCCCC--hhhHHHHHH
Q 039637 6 CRSGCFEETKQLAGDFE----AKYDK-YDVVLLNSMLCAYCRT-GDMESVMHVMRKLDEL----AISPD--YNTFHILIK 73 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~ 73 (159)
.+..++++|.+.++... +.|-. .-..++..+...|-.. |++++|++.|.+..+. | .+. ..++..+..
T Consensus 85 ~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 85 YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 34458888888877654 33322 1234677888888888 8999999999887653 2 221 345567778
Q ss_pred HHHccChHHHHHHHHHHHHHcCCC-----CcHH-HHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHH
Q 039637 74 YFCKEKMYMLAYRTMVDMHRKGHQ-----PEEE-LCSSLIFHLGKMRAHSEALSVYNMLRYS--KRSMC--KALHEKILH 143 (159)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~g~~-----~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~ 143 (159)
.+.+.|++++|.++|+++...-.. ++.. .+-..+-++...|++..|.+.+++.... +...+ -.....++.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 899999999999999998865322 2222 2223344666779999999999998754 33333 234455666
Q ss_pred HHHh
Q 039637 144 ILIS 147 (159)
Q Consensus 144 ~~~~ 147 (159)
++-.
T Consensus 244 A~~~ 247 (282)
T PF14938_consen 244 AYEE 247 (282)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6544
No 192
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.052 Score=40.74 Aligned_cols=137 Identities=14% Similarity=0.021 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 10 CFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMR--------KLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
...+|.+++...-+..+.-+..+--.++......|+++.|.+++. ...+.+-.| .+...++..+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 566777777777665555456677788888889999999999998 666655555 4555566667676666
Q ss_pred HHHHHHHHHHHHc------CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039637 82 MLAYRTMVDMHRK------GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (159)
Q Consensus 82 ~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (159)
+.|..++.+.... +-..-..++.-+...-.+.|+.++|..+++++... -++|..+..-++.+|++..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC
Confidence 6666666555431 11112234444555556779999999999999873 4668888888998888753
No 193
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.21 E-value=0.0088 Score=40.96 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=72.6
Q ss_pred CCChhhHHHHHHHHHcc-----ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC----------------CHHHHH
Q 039637 62 SPDYNTFHILIKYFCKE-----KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR----------------AHSEAL 120 (159)
Q Consensus 62 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------~~~~a~ 120 (159)
..|..+|-..+..+... ++.+-.-..+..|.+.|++-|..+|+.|+..+-+.. +-+=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45677787777776443 566666677889999999999999999999887654 234678
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 121 SVYNMLRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
+++++|...|+-||..+-..++.++.+.+.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 899999999999999999999999988775
No 194
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.039 Score=44.25 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
+.+|..+..+=.+.|...+|.+-|-+ ..|+..|..+++.+.+.|.|++..+++....+...+|.+. +.||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 34566666666666777776665533 2466788888999999999998888888877777666543 468888
Q ss_pred HHccCCHHHHHHHH
Q 039637 110 LGKMRAHSEALSVY 123 (159)
Q Consensus 110 ~~~~g~~~~a~~~~ 123 (159)
|++.+++.+.+.++
T Consensus 1176 yAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHhchHHHHHHHh
Confidence 88888877665543
No 195
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.17 E-value=0.044 Score=38.74 Aligned_cols=54 Identities=7% Similarity=0.059 Sum_probs=28.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
.+.-.|++..|+..|...++.++. +-.++-.-...|...|+...|+.=+.+..+
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 456678888888888877764332 222322223334444444444444444433
No 196
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.14 E-value=0.05 Score=41.25 Aligned_cols=149 Identities=13% Similarity=-0.001 Sum_probs=107.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAY 85 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 85 (159)
...|+-++|.+..+.-....+. +.++|..+.-.+-...++++|+..|......+ +-|...+.-+----.+.|+++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 4567888888887776654444 88899999988888999999999999988743 234566766655566778888888
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCcHHHHhhh
Q 039637 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-RSMCKALHEKIL------HILISGKLLKDAYIV 157 (159)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~A~~~ 157 (159)
....++++.. +.....|-.+..++--.|+...|..+.+...+.. ..|+...|.... ....+.|..++|.+-
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888777752 2344566778888888899999999998887654 456666655443 445566666666553
No 197
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=97.09 E-value=0.0077 Score=41.23 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHH-----cCCCCcHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR-----KGHQPEEELCS 104 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~ 104 (159)
..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4578888888888899999999988888753 34678888899999999999888888888764 58888888777
Q ss_pred HHHHHHHc
Q 039637 105 SLIFHLGK 112 (159)
Q Consensus 105 ~li~~~~~ 112 (159)
.......+
T Consensus 232 ~y~~~~~~ 239 (280)
T COG3629 232 LYEEILRQ 239 (280)
T ss_pred HHHHHhcc
Confidence 77666443
No 198
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.015 Score=42.81 Aligned_cols=104 Identities=19% Similarity=0.151 Sum_probs=85.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 81 (159)
++.+..|+++.|+..|-......+. |.+.|..-..+|.+.|++++|++=-.+-++ +.|+ .-.|+..-.+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 3567889999999999998887765 999999999999999999999877666655 6787 47899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (159)
++|+.-|.+=++.. +.+...++-+..++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 99999998877653 34566666677666
No 199
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.05 E-value=0.087 Score=40.22 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=39.5
Q ss_pred HhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAK-YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
.+.|++......|+..... .+..-..+|...+....+.+-++.+..++.+.++ .++..-+--+..+++.+++++|
T Consensus 113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHH
Confidence 3445555555555543322 1112223455555555555555555555555544 2222344445555555555555
Q ss_pred HHHHHHHH
Q 039637 85 YRTMVDMH 92 (159)
Q Consensus 85 ~~~~~~m~ 92 (159)
-+.+..++
T Consensus 189 a~~la~vl 196 (835)
T KOG2047|consen 189 AQRLATVL 196 (835)
T ss_pred HHHHHHhc
Confidence 55555443
No 200
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.036 Score=37.60 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC--CCChhhHHHHHHHHHccChHHHHHHHHHHHHHcC-CCC-cHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAI--SPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG-HQP-EEELCSS 105 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~-~~~~~~~ 105 (159)
...|+.-+..+ +.|++.+|...|..-++..- ......+--|..++...|++++|..+|..+.+.- -.| -+...--
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 44777777664 56669999999998887631 1123455668899999999999999998888652 222 2456667
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC
Q 039637 106 LIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
|..+..+.|+.++|..+|+.+.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888889999999999999988863
No 201
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.1 Score=42.04 Aligned_cols=132 Identities=10% Similarity=0.111 Sum_probs=91.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
...++-+++|..+|+... .+....+.|++- .+..+.|.+.-++. -.+..|+.+..+-.+.|...+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHH
Confidence 344445556666554442 244444444432 23444454443332 2346788888888888888888
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++-|- +. -|+..|.-++....+.|.+++-.+++...++....|... +.+|-+|.+.+++.+-++++
T Consensus 1124 ieSyi---ka---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1124 IESYI---KA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHH---hc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 76553 22 366689999999999999999999999888777777765 58999999999998887764
No 202
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.95 E-value=0.064 Score=37.36 Aligned_cols=127 Identities=12% Similarity=0.116 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCC----hHHHHHHHHHhHhcCC---CCChhhHHHHHHHHHccCh-
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR--TGD----MESVMHVMRKLDELAI---SPDYNTFHILIKYFCKEKM- 80 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~----~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~- 80 (159)
+++..++++.|.+.|+..+..+|-+....... ..+ ...+.++|+.|++... .++...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55677888899999998887776654333333 333 4568999999998743 3455666666655 2233
Q ss_pred ---HHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCHHHHH
Q 039637 81 ---YMLAYRTMVDMHRKGHQPEE--ELCSSLIFHLGKMRA--HSEALSVYNMLRYSKRSMCKALHE 139 (159)
Q Consensus 81 ---~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~ 139 (159)
.+.++.+|+.+.+.|...+- .....++........ ...+..+++.+.+.++++....|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 35778888888887876543 333444444433333 347778888999888887665544
No 203
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.91 E-value=0.039 Score=33.72 Aligned_cols=87 Identities=11% Similarity=0.069 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (159)
...++..+.+.+.+..+...++.+...+. .+...++.++..|++.+ ..+..+.+.. . ++......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 45677788888899999999999988773 67788999999998764 3444455442 1 233344557777778
Q ss_pred cCCHHHHHHHHHHHH
Q 039637 113 MRAHSEALSVYNMLR 127 (159)
Q Consensus 113 ~g~~~~a~~~~~~~~ 127 (159)
.+.++++..++.++.
T Consensus 82 ~~l~~~~~~l~~k~~ 96 (140)
T smart00299 82 AKLYEEAVELYKKDG 96 (140)
T ss_pred cCcHHHHHHHHHhhc
Confidence 888888888877664
No 204
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.89 E-value=0.11 Score=40.26 Aligned_cols=124 Identities=6% Similarity=-0.098 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLG 111 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 111 (159)
.|......+.+.+..++|...+.+..+.. .-....|...-..+...|.+.+|.+.|...+... +-++....++..++.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 56677788888999999998888877642 2334556655567788899999999998777643 235667889999999
Q ss_pred ccCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 112 KMRAHSEALS--VYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 112 ~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+.|+...|.. ++.++...+ +.+...|..+-..+-+.|+.++|.+.|
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999888888 888888644 457889999999999999999998876
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.88 E-value=0.054 Score=39.66 Aligned_cols=122 Identities=15% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcC-CCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHH-HHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELC-SSLI 107 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~li 107 (159)
..+|...|+.-.+..-.+.|..+|-+..+.| +.+++..+++++..++. |+..-|.++|+-=... .||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3467778888777777888899998888888 57778888888887765 6677777777654432 3555555 4677
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCcHHHHh
Q 039637 108 FHLGKMRAHSEALSVYNMLRYSKRS--MCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
..+.+.++-+.|..+|+..... +. .-..+|..+|.-=.+-|++..++
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVY 522 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHH
Confidence 7788888888888888844321 11 12467888888888888875554
No 206
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.07 Score=38.22 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=84.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC-----CCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK-----YDK---------YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF 68 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 68 (159)
+.|.+.|++..|...|++..+. +.. .-..+++.+.-++.+.+++.+|+..-++.+..+ ++|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4678889999999998875432 111 123356777778888888998888888887754 3455555
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccCCHH-HHHHHHHHHHh
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHS-EALSVYNMLRY 128 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~ 128 (159)
-.--.++...++++.|+..|+.+++. .| |..+-+.++.+-.+..... ...++|..|-.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55777888889999999999988875 44 4445556666555554444 34667777764
No 207
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.13 Score=38.17 Aligned_cols=90 Identities=12% Similarity=-0.001 Sum_probs=63.4
Q ss_pred HHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHH
Q 039637 38 CAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117 (159)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 117 (159)
+.+.+.|++..|+..|.+++... +-|...|+...-+|.+.+.+..|++--+...+.. ++....|..=..++.-..+++
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888887754 3356788888888888888888887766666652 334445544455555566788
Q ss_pred HHHHHHHHHHhC
Q 039637 118 EALSVYNMLRYS 129 (159)
Q Consensus 118 ~a~~~~~~~~~~ 129 (159)
+|...|++....
T Consensus 444 kAleay~eale~ 455 (539)
T KOG0548|consen 444 KALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHhc
Confidence 888888877754
No 208
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=96.78 E-value=0.022 Score=32.37 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHH
Q 039637 45 DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMH 92 (159)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (159)
|..++.+-++.+....+.|++....+.+++|.+.+|+.-|.++++-++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555666666666666666666666666666666666666666555
No 209
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.77 E-value=0.054 Score=34.74 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC--hhhHHHHHHHHHccChHHHHHHHHHHHHHc---CCCCcHHHHHH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKMYMLAYRTMVDMHRK---GHQPEEELCSS 105 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ 105 (159)
..+..+.+.|++.|+.++|.+.|.++.+....|. ...+-.++......+++..+.....+.... |..++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5788999999999999999999999998765554 356678888889999999999888777643 22222221111
Q ss_pred HHHH--HHccCCHHHHHHHHHHHHh
Q 039637 106 LIFH--LGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 106 li~~--~~~~g~~~~a~~~~~~~~~ 128 (159)
+..+ +...+++..|.+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 2222 3346899999988876653
No 210
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.027 Score=39.02 Aligned_cols=149 Identities=16% Similarity=0.142 Sum_probs=94.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHH-HHHHHHccChHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHI-LIKYFCKEKMYM 82 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~ 82 (159)
.+.+..+++.|++++....++.+. +....+.+..+|....++..|-+.++++... -|...-|.. -....-+.+.+.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 347788899999999888777554 8888899999999999999999999998873 454444421 112223334445
Q ss_pred HHHHHHHHHHHc------------------CCC----------C---cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-C
Q 039637 83 LAYRTMVDMHRK------------------GHQ----------P---EEELCSSLIFHLGKMRAHSEALSVYNMLRYS-K 130 (159)
Q Consensus 83 ~a~~~~~~m~~~------------------g~~----------~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~ 130 (159)
.|+++...|... +.- | +..+.+...-...+.|+.+.|.+-|+...+- |
T Consensus 96 DALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 96 DALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 555554444320 000 1 1222222222334678999999999977654 5
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 131 RSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
..| ...|+..+. ..+.|+.+.|.+.
T Consensus 176 yqp-llAYniALa-Hy~~~qyasALk~ 200 (459)
T KOG4340|consen 176 YQP-LLAYNLALA-HYSSRQYASALKH 200 (459)
T ss_pred CCc-hhHHHHHHH-HHhhhhHHHHHHH
Confidence 554 457766554 4456777777764
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.76 E-value=0.12 Score=37.13 Aligned_cols=154 Identities=13% Similarity=0.014 Sum_probs=93.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKY---DKYDVVLLNSMLCAYCR---TGDMESVMHVMRKLDELAISPDYNTFHILIKYFC 76 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 76 (159)
-.|....+++.-.++.+.+.... +.-.+.+--...-++-+ .|+.++|++++..+....-.++..||..+-..|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 35677788888889988887641 11122333344455666 8899999999998776666788888887776652
Q ss_pred c---------cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC----HHHHHHHH---HH-HHhC---CCCCCHH
Q 039637 77 K---------EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA----HSEALSVY---NM-LRYS---KRSMCKA 136 (159)
Q Consensus 77 ~---------~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----~~~a~~~~---~~-~~~~---~~~~~~~ 136 (159)
. ...+++|+.+|.+-.+.. ||...--.++..+...|. -.+..++- .. +... ....+-+
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 2 234677888777666543 443222222222333332 12222222 11 1112 2345677
Q ss_pred HHHHHHHHHHhcCcHHHHhhhh
Q 039637 137 LHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+..++.+.+-.|+.++|.+..
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~ 328 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAA 328 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 8889999999999998887653
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.082 Score=37.89 Aligned_cols=112 Identities=9% Similarity=-0.024 Sum_probs=82.5
Q ss_pred HHHHhcCChHHHHHHHHHhHhc-----CCC---------CChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHH
Q 039637 38 CAYCRTGDMESVMHVMRKLDEL-----AIS---------PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELC 103 (159)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~-----~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 103 (159)
+.|.+.|++..|...|++.+.. +.. .-..++..+.-++.+.+++..|++.-++.+..+ +.|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4678899999998888875542 111 224567788889999999999999999999875 4677777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 104 SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
-.=..+|...|+++.|+..|+++..- .|-|..+-+.++.+-.+....
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~-~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL-EPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999863 233444544555444444333
No 213
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.74 E-value=0.061 Score=42.31 Aligned_cols=137 Identities=9% Similarity=0.004 Sum_probs=84.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcC---------CCCChhhHHHHHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA---------ISPDYNTFHILIKY 74 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~ll~~ 74 (159)
.|..-|+++.|.+-++.++ +..+|..|...|.+..+.+-|.-.+..|.... -.|+ .+=..+.-.
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 3566788888877766554 66789999999999888888887777776531 1222 111122222
Q ss_pred HHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 039637 75 FCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154 (159)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (159)
....|.+++|+.+|.+-.+. ..|=..|...|.+++|.++-+.-- -..-..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D---RiHLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD---RIHLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc---ceehhhhHHHHHHHHHhhccHHHH
Confidence 34557777887777766542 234445666777777776654221 111234666666666667777777
Q ss_pred hhhhC
Q 039637 155 YIVVK 159 (159)
Q Consensus 155 ~~~~~ 159 (159)
++.|+
T Consensus 878 leyyE 882 (1416)
T KOG3617|consen 878 LEYYE 882 (1416)
T ss_pred HHHHH
Confidence 66653
No 214
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.73 E-value=0.036 Score=44.12 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=65.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHH--HHccChHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY--FCKEKMYM 82 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~ 82 (159)
|.+.++...|...|+......|+ |...|..+..+|.+.|.+..|..+|.+... +.|+ .+|.....+ -+..|++.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHHHHHHHhhhHH
Confidence 56678888888888888776665 899999999999999999999999988776 4454 344433333 45668899
Q ss_pred HHHHHHHHHHH
Q 039637 83 LAYRTMVDMHR 93 (159)
Q Consensus 83 ~a~~~~~~m~~ 93 (159)
++.+.++.+..
T Consensus 648 eald~l~~ii~ 658 (1238)
T KOG1127|consen 648 EALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHH
Confidence 99888887763
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.73 E-value=0.052 Score=39.63 Aligned_cols=64 Identities=6% Similarity=-0.153 Sum_probs=55.1
Q ss_pred ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 64 DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEE----ELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
+...++.+-.+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|...+++....
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45778899999999999999999999988753 543 35889999999999999999999988764
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.11 Score=35.76 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=77.0
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHc
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG---DMESVMHVMRKLDELAISPD-YNTFHILIKYFCK 77 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 77 (159)
-..|...|+...|..-|....+..++ |+..+..+..++.... +..++..+|+++.. ..|+ ..+-..|-..+..
T Consensus 163 g~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral~lLA~~afe 239 (287)
T COG4235 163 GRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRALSLLAFAAFE 239 (287)
T ss_pred HHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHHHHHHHHHHH
Confidence 35789999999999999998876544 7778888887776543 46789999999998 4565 4555566677999
Q ss_pred cChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 78 EKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
.|++.+|...|+.|++.. +|+ ..+..+|
T Consensus 240 ~g~~~~A~~~Wq~lL~~l-p~~-~~rr~~i 267 (287)
T COG4235 240 QGDYAEAAAAWQMLLDLL-PAD-DPRRSLI 267 (287)
T ss_pred cccHHHHHHHHHHHHhcC-CCC-CchHHHH
Confidence 999999999999999874 333 3344444
No 217
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.67 E-value=0.071 Score=33.44 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=55.6
Q ss_pred HhcCChHHHHHHHHHhHhcCCCCChhhHHHH-HHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 039637 41 CRTGDMESVMHVMRKLDELAISPDYNTFHIL-IKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 119 (159)
.+.++.+++..++.-+.- +.|.......+ ...+.+.|+|.+|+.+|+++.... |.......|+..|....+-..-
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHH
Confidence 345677777777777766 45655444322 223566677777777777776543 3333444555444444332223
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 039637 120 LSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154 (159)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (159)
..+-+.+...+..|+. ..++..+.+..+...|
T Consensus 97 r~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 97 RRYADEVLESGADPDA---RALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHHHhcCCChHH---HHHHHHHHHhccccch
Confidence 3333344444433333 3455555554444433
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=96.63 E-value=0.078 Score=33.41 Aligned_cols=88 Identities=8% Similarity=-0.033 Sum_probs=70.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
+...|++++|..+|..+...++. +..-|..|..++-..+++++|.+.|......+. -|+..+-..-.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 45779999999999999887765 666677777788888999999999988776543 3444455577889999999999
Q ss_pred HHHHHHHHHc
Q 039637 85 YRTMVDMHRK 94 (159)
Q Consensus 85 ~~~~~~m~~~ 94 (159)
+..|......
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 9999888873
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.62 E-value=0.18 Score=37.52 Aligned_cols=154 Identities=12% Similarity=-0.008 Sum_probs=101.6
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHh----cCChHHHHHHHHHhHhcCCCCChhhHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVV------LLNSMLCAYCR----TGDMESVMHVMRKLDELAISPDYNTFHIL 71 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 71 (159)
++..+=.|+-+.+++.+..-.+.+--..+. .|...+..++. ..+.+.|.+++..+.+. -|+...|...
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~ 272 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFF 272 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 455566789999999988766543221222 35555555544 34678899999999884 5776666533
Q ss_pred H-HHHHccChHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH
Q 039637 72 I-KYFCKEKMYMLAYRTMVDMHRKG---HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKIL-HILI 146 (159)
Q Consensus 72 l-~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 146 (159)
- +.+...|++++|.+.++...... .+.....+--+...+.-.+++++|...|..+.+..-- +..+|..+. .++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHH
Confidence 3 44677799999999999765321 1234445556777888999999999999999864322 455555444 4445
Q ss_pred hcCcH-------HHHhhhh
Q 039637 147 SGKLL-------KDAYIVV 158 (159)
Q Consensus 147 ~~g~~-------~~A~~~~ 158 (159)
..|+. ++|.++|
T Consensus 352 ~l~~~~~~~~~~~~a~~l~ 370 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELF 370 (468)
T ss_pred hhccchhhhhhHHHHHHHH
Confidence 56666 6666654
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.62 E-value=0.17 Score=37.14 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=92.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-C---C-HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHH--HHcc
Q 039637 6 CRSGCFEETKQLAGDFEAKYDK-Y---D-VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY--FCKE 78 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~-~---~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~ 78 (159)
-+.+++.+|.++|.+..++.-. | . ...-+.++++|...+ .+.....+....+. .| ...|-.+..+ +-+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 3568999999999998765322 1 1 334568888887654 55555555555542 24 3445555555 4567
Q ss_pred ChHHHHHHHHHHHHHc--CCC------------CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHH
Q 039637 79 KMYMLAYRTMVDMHRK--GHQ------------PEEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSMCKALHEK 140 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~--g~~------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ 140 (159)
+++++|.+.+..-... +-. +|...-+..+.++.+.|.++++..++++|... ...-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899998887665543 222 22223366788889999999999999888754 33467888888
Q ss_pred HHHHHHhcC
Q 039637 141 ILHILISGK 149 (159)
Q Consensus 141 l~~~~~~~g 149 (159)
++-.+.++=
T Consensus 173 ~vlmlsrSY 181 (549)
T PF07079_consen 173 AVLMLSRSY 181 (549)
T ss_pred HHHHHhHHH
Confidence 777776643
No 221
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=96.61 E-value=0.02 Score=32.87 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHc
Q 039637 45 DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (159)
|..+...-++.+....+.|++....+.+++|.+.+++.-|.++++-+..+
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666666666543
No 222
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.59 E-value=0.12 Score=34.97 Aligned_cols=125 Identities=12% Similarity=0.113 Sum_probs=84.4
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c---------------CC---hHHHHHHHHHhHhcCC
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR--T---------------GD---MESVMHVMRKLDELAI 61 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~---------------~~---~~~a~~~~~~m~~~~~ 61 (159)
..++.+.+++++|...|++..+..|.-....|...+.+.+. . .| ..+|...|+.+++.
T Consensus 76 a~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~-- 153 (243)
T PRK10866 76 IYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG-- 153 (243)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--
Confidence 45678999999999999999988766444455555555431 1 12 23566777777764
Q ss_pred CCChhhH------------------HHHHHHHHccChHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHccCCHHHHHH
Q 039637 62 SPDYNTF------------------HILIKYFCKEKMYMLAYRTMVDMHRK--GHQPEEELCSSLIFHLGKMRAHSEALS 121 (159)
Q Consensus 62 ~~~~~~~------------------~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (159)
-|+..-. -.+.+-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..
T Consensus 154 yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 154 YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 2432111 12344577888888888888888865 222345566788899999999999998
Q ss_pred HHHHHHh
Q 039637 122 VYNMLRY 128 (159)
Q Consensus 122 ~~~~~~~ 128 (159)
+...+..
T Consensus 234 ~~~~l~~ 240 (243)
T PRK10866 234 VAKIIAA 240 (243)
T ss_pred HHHHHhc
Confidence 8776643
No 223
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.58 E-value=0.072 Score=32.39 Aligned_cols=89 Identities=8% Similarity=0.048 Sum_probs=48.7
Q ss_pred HHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHH---HHHHHHHccCC
Q 039637 39 AYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCS---SLIFHLGKMRA 115 (159)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~---~li~~~~~~g~ 115 (159)
+.+..|+.++|++.|.+.... .+-+...||.-..++.-+|+.++|++-+++.++..-.-+...+. .-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 445666777777777666552 12345666666666666677776666666655432111222222 22334555666
Q ss_pred HHHHHHHHHHHHh
Q 039637 116 HSEALSVYNMLRY 128 (159)
Q Consensus 116 ~~~a~~~~~~~~~ 128 (159)
.|.|..=|+..-.
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 6666666654443
No 224
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.57 E-value=0.08 Score=36.41 Aligned_cols=78 Identities=12% Similarity=-0.010 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 039637 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY-----SKRSMCKALHEK 140 (159)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 140 (159)
.++..++..+...|+.+.+...++++.... +.+...|..++.+|.+.|+...|++.|+.+.. .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 577888999999999999999999999864 56888999999999999999999999987764 478888877665
Q ss_pred HHHH
Q 039637 141 ILHI 144 (159)
Q Consensus 141 l~~~ 144 (159)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 225
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=96.53 E-value=0.14 Score=35.22 Aligned_cols=137 Identities=7% Similarity=0.061 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHhHhc-CCCCChhhHHHHHHHHHccChHHHHH
Q 039637 10 CFEETKQLAGDFEA-KYDKYDVVLLNSMLCAYCRT--GDMESVMHVMRKLDEL-AISPDYNTFHILIKYFCKEKMYMLAY 85 (159)
Q Consensus 10 ~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~ 85 (159)
.+.+|+.+|+...- ..+-.|..+-..+++..... .....-.++.+-+... |-.++..+...++..++..++|.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566666653322 22334666666666666552 2333444444444432 34567777777888888888888888
Q ss_pred HHHHHHHHc-CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH-----HhCCCCCCHHHHHHHHHHHH
Q 039637 86 RTMVDMHRK-GHQPEEELCSSLIFHLGKMRAHSEALSVYNML-----RYSKRSMCKALHEKILHILI 146 (159)
Q Consensus 86 ~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~~~ 146 (159)
+++...... +..-|...|..+|......|+..-..++.++- +..+++.+...-.++-+.+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 877776654 45557778888888888888888777766532 23456666655444444443
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.50 E-value=0.17 Score=37.70 Aligned_cols=138 Identities=10% Similarity=0.008 Sum_probs=90.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHhHhcC--C-CCChhhHHHHHHHHHccChHHH
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSML-CAYCRTGDMESVMHVMRKLDELA--I-SPDYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~--~-~~~~~~~~~ll~~~~~~~~~~~ 83 (159)
....+.|.+++..+.++ .|+...|...- +.+...|+.++|++.|++..... . ......+--+.-++.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 56788999999999875 45665555433 45567899999999999765321 1 1122334456677888899999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHH-HHHHHccCCH-------HHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhc
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSL-IFHLGKMRAH-------SEALSVYNMLRYS------KRSMCKALHEKILHILISG 148 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~-------~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~ 148 (159)
|.+.+..+.+..- -+..+|.-+ ..++...|+. ++|..+|.+.... ...|-......-+.-|.+.
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhc
Confidence 9999999997642 344555433 3444556777 8899988876531 1223333334555555554
No 227
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.45 E-value=0.019 Score=27.51 Aligned_cols=27 Identities=11% Similarity=-0.041 Sum_probs=16.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 102 LCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
++..+...|.+.|++++|.++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666666666666654
No 228
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.43 E-value=0.2 Score=35.65 Aligned_cols=149 Identities=10% Similarity=0.072 Sum_probs=82.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHH--------
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYF-------- 75 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-------- 75 (159)
.+...|+...|.+...++.+-.+ .|...|..-..+|...|++..|+.=++...+..- .++.++--+-..+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHH
Confidence 45556777777777777776443 3677777777777777777776655544433211 1222221122222
Q ss_pred --------------------------------------HccChHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHccC
Q 039637 76 --------------------------------------CKEKMYMLAYRTMVDMHRKGHQP---EEELCSSLIFHLGKMR 114 (159)
Q Consensus 76 --------------------------------------~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g 114 (159)
...++|.++++-.+.+.+...+. ....+..+-.++..-|
T Consensus 242 sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 242 SLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred HHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 23344555555555444433221 1223445566666778
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHhh
Q 039637 115 AHSEALSVYNMLRYSKRSMC-KALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
++-+|++...+... +.|| ..++.-=..+|.-...+|+|+.
T Consensus 322 ~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred CHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88888888887774 2333 5555555566666666666654
No 229
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=96.43 E-value=0.043 Score=31.58 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (159)
|.-+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.. ..+....|..+++-
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 44466777788887778888888888888888888888888888877752 22222367666654
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.39 E-value=0.011 Score=28.38 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhc
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDEL 59 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 59 (159)
+|..+..+|.+.|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777776663
No 231
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=96.36 E-value=0.0018 Score=39.76 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=59.8
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
+|+.+.+.+.++.+..+++.+...+...+....+.++..|++.++.++++++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4667777888888888888888776666788899999999999887888887762 222333456677777777
Q ss_pred HHHHHHHHHHH
Q 039637 81 YMLAYRTMVDM 91 (159)
Q Consensus 81 ~~~a~~~~~~m 91 (159)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77776666554
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.28 E-value=0.12 Score=31.53 Aligned_cols=124 Identities=8% Similarity=0.073 Sum_probs=70.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc-C----------------CCCChhh
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL-A----------------ISPDYNT 67 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~----------------~~~~~~~ 67 (159)
+.-.|.+++..++..+...+. +..-+|-+|.--...-+=+-+.++++..-+. . ...+...
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence 345688999999998887642 3334444443333332223333333332221 0 0123344
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 039637 68 FHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS 132 (159)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 132 (159)
+...++....+|+-+...+++..+.+.+ .+++...-.+..+|.+.|+..++..++++.-+.|.+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5567777788888888888888887643 577778888899999999999999998888776654
No 233
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.25 E-value=0.15 Score=32.59 Aligned_cols=129 Identities=10% Similarity=0.051 Sum_probs=90.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh-hHHHHHHH--HHccCh
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN-TFHILIKY--FCKEKM 80 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~--~~~~~~ 80 (159)
+.+.|+.++|+.-|..+.+.|..- .+...-.......+.|+..+|...|.+.-...-.|-.. -...|=.+ +...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356789999999999999887542 22233334456678899999999999988754444332 11222222 455688
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM 133 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 133 (159)
++....-.+.+-..+-+.-...-..|.-+-.+.|++.+|.+.|+.+......|
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 88877777777665555555666788888889999999999999888644333
No 234
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.23 Score=34.02 Aligned_cols=124 Identities=10% Similarity=-0.036 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc-----HHHHHHHHH
Q 039637 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE-----EELCSSLIF 108 (159)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~ 108 (159)
++++..+.-.|.+.-.++++++..+..-..++...+.|.+.-.+.||.+.|...|+.+.+..-..| ..+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 444555555667777788888888765455667777888888888999999988887775432233 333334445
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.|...+++..|.+.+.++...+ +.+....|.-.-+..-.|+..+|.+.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~ 309 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQL 309 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888887543 234444455555555667777776654
No 235
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.14 E-value=0.43 Score=36.72 Aligned_cols=92 Identities=8% Similarity=0.068 Sum_probs=50.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC----------------
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYD---VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP---------------- 63 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---------------- 63 (159)
+.|-.+|+++.|..+|++..+-..+-- ..+|..-.+.=.+..+++.|+++.......--.|
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 456778888888888887776543311 1344444444445666777777766544321110
Q ss_pred -ChhhHHHHHHHHHccChHHHHHHHHHHHHHc
Q 039637 64 -DYNTFHILIKYFCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 64 -~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (159)
+...|+-.++.-...|-++....+++.+.+.
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1223344444444445566666666666543
No 236
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.14 Score=35.84 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc---CCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHH
Q 039637 25 YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL---AISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEE 101 (159)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 101 (159)
|.+.+..+-..++..-....+++.+...+-++..+ -..|+...+. .+.-| -.-++.+++.++..-.+.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 33445555666666666667788888887777653 2233333332 23333 2346678888888888888889999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 102 LCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
+++.+++.+.+.+++.+|.++.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999988888887665553
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.09 E-value=0.15 Score=31.05 Aligned_cols=92 Identities=17% Similarity=0.054 Sum_probs=66.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh---hhHHHHHHHHHccCh
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY---NTFHILIKYFCKEKM 80 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~ 80 (159)
+....|+.+.|++.|......-++ ....||.-..++--.|+.++|++=+++.++..-..+. ..|..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456788999999999887765444 7888999999999999999999888888764211222 223333344667788
Q ss_pred HHHHHHHHHHHHHcCC
Q 039637 81 YMLAYRTMVDMHRKGH 96 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~ 96 (159)
-+.|..-|+..-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888877773
No 238
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.09 E-value=0.022 Score=26.06 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKL 56 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m 56 (159)
|+.|.+.|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666553
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.08 E-value=0.38 Score=35.51 Aligned_cols=138 Identities=11% Similarity=0.048 Sum_probs=99.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhH-HHHHHHHHccCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKY-DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF-HILIKYFCKEKM 80 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~ 80 (159)
+.-.+..-++.|..+|-++.+.| ..+++.+++++|..++. |++..|..+|+-=... -||...| .-.+..+.+.++
T Consensus 405 N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~ind 481 (660)
T COG5107 405 NYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRIND 481 (660)
T ss_pred HHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCc
Confidence 34455667889999999999998 56889999999998875 5688888888653332 3665555 466777888899
Q ss_pred HHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039637 81 YMLAYRTMVDMHRKGHQPE--EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (159)
-+.|..+|+.-..+ +..+ ..+|..+|+--...|++..+..+=+.+... -|...+...+...|.
T Consensus 482 e~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 482 EENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 99999999855433 1222 468999999999999999988887777642 234434344444443
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.01 E-value=0.27 Score=33.28 Aligned_cols=152 Identities=12% Similarity=0.152 Sum_probs=98.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcC-CCCCh--hhHHHHHHHHHcc-
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDK--YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPDY--NTFHILIKYFCKE- 78 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~--~~~~~ll~~~~~~- 78 (159)
-.+.|++++|.+.|+.+....+- ....+--.++-++.+.+++++|+...++....- -.||. ..|-..+.-+...
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 35789999999999999976543 234455666678889999999999999887742 23332 3333333322222
Q ss_pred ---ChHHH---HHHHHHHHHHc----CCCCcHHH-----------H-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--
Q 039637 79 ---KMYML---AYRTMVDMHRK----GHQPEEEL-----------C-SSLIFHLGKMRAHSEALSVYNMLRYSKRSMC-- 134 (159)
Q Consensus 79 ---~~~~~---a~~~~~~m~~~----g~~~~~~~-----------~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 134 (159)
+|... |..-|+.++++ ...||... + ..+.+.|.+.|.+..|..-++.|.+. .+-+
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~ 202 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSA 202 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccc
Confidence 34444 44444555443 11122211 1 24567889999999999999999875 3323
Q ss_pred -HHHHHHHHHHHHhcCcHHHHhhh
Q 039637 135 -KALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 135 -~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
...+-.+..+|-+-|..++|.+.
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHH
Confidence 33456677899999988888653
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.35 Score=34.35 Aligned_cols=149 Identities=11% Similarity=-0.026 Sum_probs=83.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHH----HHHHHHccChHHH
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHI----LIKYFCKEKMYML 83 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----ll~~~~~~~~~~~ 83 (159)
+|+..+|...|+++.+.-|+ |...++--=++|.-.|+...-...+.+..-. ..|+...|+- ..-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 46666677777777654443 6667776667777777766666666665543 2344433332 2223445677777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK---RSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
|++.-++..+-+ +.|.-.-.++...+.-.|+..++.++..+-...- .-.-.+.|-...-.++..+.++.|+++|+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 766665555433 2344444566666666677777766655443210 00112234444555666677777776653
No 242
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.92 E-value=0.014 Score=26.45 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=22.3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 039637 19 GDFEAKYDKYDVVLLNSMLCAYCRTGDMESVM 50 (159)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 50 (159)
++..+..|. |..+|+.+...|...|++++|.
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 344444444 7788888888888888888775
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.35 Score=33.48 Aligned_cols=145 Identities=12% Similarity=0.021 Sum_probs=92.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 83 (159)
.....|++.+|...|.......+. +...--.+.++|...|+.+.|..++..+...--.........-|....+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 346678899999999888776555 5666778888999999999999999887764322333332233334444444443
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM-LRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
...+-.+.-.. +-|...--.+...+...|+.++|...+=. ++...-.-|...-..++..+.--|..
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 33443444332 23666777788889999999999876554 44332233445556666666665543
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.80 E-value=0.54 Score=35.03 Aligned_cols=74 Identities=12% Similarity=-0.007 Sum_probs=53.6
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHRKGHQ-PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC-KALHEKIL 142 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 142 (159)
..+-.++-+.|+.++|.+.+.+|.+.... .+..+...|+.++...+...++..++.+-.+...+.+ ...|++.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 35666677889999999999999875322 2344777899999999999999999998754333322 33466544
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.79 E-value=0.27 Score=31.53 Aligned_cols=93 Identities=12% Similarity=0.042 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC---CCHHHHHH
Q 039637 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE--EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS---MCKALHEK 140 (159)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~ 140 (159)
..+..+...|++.|+.+.|.+.+.++.+....+. ...+-.+|+.....+++..+...+.+....... .+...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5677889999999999999999999998755443 345677899999999999999998877643222 22221111
Q ss_pred HH--HHHHhcCcHHHHhhhh
Q 039637 141 IL--HILISGKLLKDAYIVV 158 (159)
Q Consensus 141 l~--~~~~~~g~~~~A~~~~ 158 (159)
.. -.+...+++.+|-+.|
T Consensus 117 ~~~gL~~l~~r~f~~AA~~f 136 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELF 136 (177)
T ss_pred HHHHHHHHHhchHHHHHHHH
Confidence 22 2233466777776554
No 246
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.79 E-value=0.2 Score=32.74 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=60.3
Q ss_pred HHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCc
Q 039637 74 YFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY---SKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
-..+.|+ +.|.+.|-++...+.--++...-.|...| ...+.+++.+++....+ .+..+|+..+..|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455566 56788888888777554555555555444 47889999998886653 2447899999999999999999
Q ss_pred HHHHhh
Q 039637 151 LKDAYI 156 (159)
Q Consensus 151 ~~~A~~ 156 (159)
.+.|+-
T Consensus 194 ~e~AYi 199 (203)
T PF11207_consen 194 YEQAYI 199 (203)
T ss_pred hhhhhh
Confidence 999974
No 247
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.77 E-value=0.28 Score=32.02 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHccCCHHHHH
Q 039637 46 MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRK---GHQPEEELCSSLIFHLGKMRAHSEAL 120 (159)
Q Consensus 46 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~ 120 (159)
-++|...|-.+...+.--+...-..|...|. ..+.+++..++.+.++. +..+|+..+..|++.|-+.|+.+.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3567777777877766555555555555555 68899999999888853 34688999999999999999999886
No 248
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.76 E-value=0.11 Score=31.63 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=60.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAY 85 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 85 (159)
..+|+.......+-.+ ..+....+..++.....|+-+...+++.++.+.+ .+++...-.+..+|.+.|+..++.
T Consensus 67 s~C~NlKrVi~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ 140 (161)
T PF09205_consen 67 SKCGNLKRVIECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREAN 140 (161)
T ss_dssp GG-S-THHHHHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHH
T ss_pred hhhcchHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHH
Confidence 4567777777776443 2355677888999999999999999999987643 577778888999999999999999
Q ss_pred HHHHHHHHcCCC
Q 039637 86 RTMVDMHRKGHQ 97 (159)
Q Consensus 86 ~~~~~m~~~g~~ 97 (159)
+++.+.=+.|.+
T Consensus 141 ell~~ACekG~k 152 (161)
T PF09205_consen 141 ELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-H
T ss_pred HHHHHHHHhchH
Confidence 999998888863
No 249
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=95.72 E-value=0.16 Score=30.57 Aligned_cols=61 Identities=7% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (159)
.+..+.++.+....+.|++.+...-++++-+.+++..|.++|+-++. ...+....|...++
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~-K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD-KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-hcccHHHHHHHHHH
Confidence 34555566666666667777777777777777777777777776664 33333344554443
No 250
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.43 Score=34.72 Aligned_cols=50 Identities=4% Similarity=-0.046 Sum_probs=20.2
Q ss_pred hcCChHHHHHHHHHhHhc---CCCCChhhHHHHHHHHHccChHHHHHHHHHHH
Q 039637 42 RTGDMESVMHVMRKLDEL---AISPDYNTFHILIKYFCKEKMYMLAYRTMVDM 91 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (159)
+.|.+..|.+.|.+.+.. .+.|+...|........+.|++++|+.--+..
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 344444444444444431 12222233333333344444444444444433
No 251
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.15 Score=35.72 Aligned_cols=85 Identities=13% Similarity=0.091 Sum_probs=63.1
Q ss_pred hcCCHHHHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 7 RSGCFEETKQLAGDFEAKY---DKY--DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~---~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
+..+++.+...+-++..+. ..| +.++|-.+ +..-++++++.++..-.+-|+-||.++++.+++.+.+.+++
T Consensus 76 ~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~ 151 (418)
T KOG4570|consen 76 SREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENY 151 (418)
T ss_pred cccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccH
Confidence 4567888888877776431 111 22233222 33456889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 039637 82 MLAYRTMVDMHRKG 95 (159)
Q Consensus 82 ~~a~~~~~~m~~~g 95 (159)
.+|..+.-+|....
T Consensus 152 ~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 152 KDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988887776543
No 252
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.18 Score=39.07 Aligned_cols=109 Identities=9% Similarity=-0.000 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
--+.+--+.-+...|+-.+|.++-.+.+ .||...|-.=+.+++..++|++.+++-+.+. ++..|.-.+..
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3345555666777888888887766654 3888888888889999999887666544332 24577778888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 110 LGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 110 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
|.+.|+.++|.+++.+.... . -.+.+|.+.|++.+|.++
T Consensus 754 c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence 99999999999888665421 1 467788888888887653
No 253
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.59 E-value=0.32 Score=30.89 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=71.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHc
Q 039637 15 KQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (159)
.+.++.+.+.+++|+...+..+++.+.+.|++.... ++.+.++-+|.......+-.... ....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 566667778899999999999999999999876654 45556676776666655544433 233445554444433
Q ss_pred -CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 95 -GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 95 -g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
+ ..+..+++.+...|++-+|.++.+...
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 2 145567888889999999999988764
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.58 E-value=0.043 Score=25.03 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=10.7
Q ss_pred HHHHHHHHHccChHHHHHHHHHH
Q 039637 68 FHILIKYFCKEKMYMLAYRTMVD 90 (159)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~ 90 (159)
|..|-..|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444445555555555555544
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.92 Score=35.95 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=78.8
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDV--VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 79 (159)
++..++..-++-|..+- +..+..++. .......+-+.+.|++++|...|-+-... +.| +.++.-|....
T Consensus 341 L~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 34566667777777664 333333221 23344445566788999998887665432 222 22444555556
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
.....-.+++.+.+.|.. +...-..|+.+|.+.++.++-..+.+.........|. ...+..+-+.+-+++|.
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~---e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDV---ETALEILRKSNYLDEAE 483 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeH---HHHHHHHHHhChHHHHH
Confidence 666666777777777763 4455567788888887777666655544421111122 33444444444444443
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.41 E-value=0.33 Score=29.92 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=23.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 7 RSGCFEETKQLAGDFEAKYDK--YDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
+.|++++|.+.|+.+..+-+. -...+--.++.+|.+.+++++|...+++..+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555554443221 1223334444455555555555555555444
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.35 E-value=0.072 Score=23.66 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666555
No 258
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=0.16 Score=39.33 Aligned_cols=101 Identities=14% Similarity=0.036 Sum_probs=79.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 83 (159)
-+..-|+-.+|.++-.+.+ -||-..|-.=+.+++..++|++.+++-+.++ ++.-|...+.+|.+.|+.++
T Consensus 693 ~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH
Confidence 4556688888888866655 5799999999999999999998877765543 25788899999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHH
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVY 123 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 123 (159)
|.+++.+.-. .+ -.+.+|.+.|++.+|.++-
T Consensus 763 A~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 763 AKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 9998875531 11 5778889999998888753
No 259
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.27 E-value=0.27 Score=28.11 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (159)
|..+..+-++.+......|++.+..+.+++|-+.+++..|.++|+.++.. ...+...|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence 55677777888887788888888888888888888888888888877642 22244466666543
No 260
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.24 E-value=0.77 Score=33.15 Aligned_cols=125 Identities=15% Similarity=-0.002 Sum_probs=79.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRT---------GDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE 78 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 78 (159)
.|+.++|++++..+......+++.+|..+...|-+. ...++|.+.|.+--+ +.||..+--.+.......
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHc
Confidence 799999999999966666667888999888877542 135677888776655 345543332233333333
Q ss_pred ChHH----HHHHHH---HH-HHHcCCC---CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 039637 79 KMYM----LAYRTM---VD-MHRKGHQ---PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK 135 (159)
Q Consensus 79 ~~~~----~a~~~~---~~-m~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 135 (159)
|+.. +..++- .. +.+.|.. .+--.+.+++.++.-.|+.++|.+..++|.... +|..
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccch
Confidence 3211 222222 22 2234432 334445678888999999999999999998653 4443
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.22 E-value=0.8 Score=34.18 Aligned_cols=68 Identities=10% Similarity=0.220 Sum_probs=46.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILI 72 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll 72 (159)
+-+.|+.++|.+.|++|.+..+.. +..+...|++++...+.+.++..++.+.-+..... -...|+..+
T Consensus 269 arklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 269 ARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 345688888888888887654432 34577888888888888888888888875433312 245666444
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.15 E-value=0.41 Score=29.51 Aligned_cols=86 Identities=13% Similarity=-0.013 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC---ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP---DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSS 105 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 105 (159)
+...+-.-.....+.|++.+|.+.|+.+... ... ....--.++.++.+.+++++|...+++.++......-.-|..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3333444445556889999999999998875 222 235556788999999999999999999998643322345555
Q ss_pred HHHHHHccCC
Q 039637 106 LIFHLGKMRA 115 (159)
Q Consensus 106 li~~~~~~g~ 115 (159)
.+.+++....
T Consensus 88 Y~~gL~~~~~ 97 (142)
T PF13512_consen 88 YMRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHHH
Confidence 6666554443
No 263
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.99 E-value=0.95 Score=32.91 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=12.8
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 039637 6 CRSGCFEETKQLAGDFEA 23 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~ 23 (159)
.-.|+.+.|.+-|+.|..
T Consensus 131 l~eG~~~~Ar~kfeAMl~ 148 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD 148 (531)
T ss_pred HhcCchHHHHHHHHHHhc
Confidence 345778888888887763
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.92 E-value=0.76 Score=31.41 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=44.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcC-CCCC-hhhHHHHHHHHHccChH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDK--YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPD-YNTFHILIKYFCKEKMY 81 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~-~~~~~~ll~~~~~~~~~ 81 (159)
.+.|++..|.+.|....+..+. .....+--|.+++...|++++|...|..+.+.- -.|- ..+.--|-.+..+.|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 4455555555555555554332 122334445555555566666555555555431 0111 23344444455555555
Q ss_pred HHHHHHHHHHHHc
Q 039637 82 MLAYRTMVDMHRK 94 (159)
Q Consensus 82 ~~a~~~~~~m~~~ 94 (159)
++|...|+++.+.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5565555555543
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.93 Score=32.33 Aligned_cols=115 Identities=10% Similarity=-0.073 Sum_probs=85.8
Q ss_pred hcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHccCCHHH
Q 039637 42 RTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRK---GHQPEEELCSSLIFHLGKMRAHSE 118 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~ 118 (159)
-.|+..+|-..++++.+. .+.|...+.--=++|.-.|+.......++++.-. +.+..+.....+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 457788888888888874 4556677777778899999988888888888754 222233344556666778899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 119 ALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 119 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
|++.-++..+-+ +.|.....++.+.+...|+..++.++.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 999988877543 456777788889999999999888764
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.88 E-value=1.1 Score=33.19 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=33.3
Q ss_pred HHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHH
Q 039637 39 AYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118 (159)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 118 (159)
...+.|+++.|.+..++. ++...|..|-+...++|+++-|++.+.+.. -+..|+-.|.-.|+.+.
T Consensus 327 LAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred HHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHH
Confidence 334555555554443221 344455555555555555555555554332 12233334444444444
Q ss_pred HHHHHHHHH
Q 039637 119 ALSVYNMLR 127 (159)
Q Consensus 119 a~~~~~~~~ 127 (159)
-.++.+...
T Consensus 392 L~kl~~~a~ 400 (443)
T PF04053_consen 392 LSKLAKIAE 400 (443)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 267
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.80 E-value=1.1 Score=32.63 Aligned_cols=103 Identities=12% Similarity=0.182 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcC---------------------------
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA--------------------------- 60 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--------------------------- 60 (159)
.|..+.|.+.-+..-+.-+. -...+...+...|..|+|+.|+++.+.-++..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred cccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 34555555554444333222 34566666666666666666666665544321
Q ss_pred ------------CCCChhh-HHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 039637 61 ------------ISPDYNT-FHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (159)
Q Consensus 61 ------------~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (159)
+.|+..- -..--.++.+.|+..++-.+++.+.+. .|++.++...+ +.+.|+
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gd 309 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGD 309 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCC
Confidence 3333211 122335566777777777777777765 34444443332 344444
No 268
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.79 E-value=0.41 Score=38.04 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCcHHHHhhhh
Q 039637 139 EKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~ 158 (159)
-.+.+.|-..|++.+|..+|
T Consensus 971 YhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 971 YHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHH
Confidence 34555555555555555443
No 269
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=94.75 E-value=0.33 Score=32.29 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=56.2
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc--CCCCChhhHHHHHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL--AISPDYNTFHILIKYF 75 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~ 75 (159)
++.+.+.++..+++...+.-++.++. |......++..+|-.|+|++|..-++-.-.. ...+-..+|..++.+-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 46788999999999999988888766 7888889999999999999998877665542 1223356676666653
No 270
>PRK11906 transcriptional regulator; Provisional
Probab=94.73 E-value=1.2 Score=32.91 Aligned_cols=111 Identities=9% Similarity=-0.030 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHccChHHHHHH
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYMLAYR 86 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~ 86 (159)
.....+|.++-+...+.+.. |......+..+..-.++++.+..+|++... +.||. .+|...-..+.-.|+.++|.+
T Consensus 317 ~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 34566788888888887766 888888888888888889999999999887 56774 455545555666799999999
Q ss_pred HHHHHHHcCCCCc---HHHHHHHHHHHHccCCHHHHHHHHH
Q 039637 87 TMVDMHRKGHQPE---EELCSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 87 ~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~ 124 (159)
.+++..+. .|. ..+....+..|+..+ +++|.+++-
T Consensus 394 ~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 394 CIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 99986653 343 233344455665554 666776654
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.59 E-value=1 Score=35.27 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMR 54 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 54 (159)
|.+++|.++|-.+..+ ...+..+.+.|||..+.++++
T Consensus 748 g~feeaek~yld~drr---------DLAielr~klgDwfrV~qL~r 784 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR---------DLAIELRKKLGDWFRVYQLIR 784 (1189)
T ss_pred cchhHhhhhhhccchh---------hhhHHHHHhhhhHHHHHHHHH
Confidence 5566666665444432 223555666677777666654
No 272
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.51 E-value=0.17 Score=22.27 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
.|..+...+.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555544
No 273
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=94.50 E-value=1 Score=31.08 Aligned_cols=86 Identities=7% Similarity=0.025 Sum_probs=44.1
Q ss_pred HHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI----- 146 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 146 (159)
|.+++..++|.+++.+.-+--+..-+..+.+...-|-.|.+.+.+..+..+-..=......-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 456666677766665554443332223344555556667777776666665543332211112222444444333
Q ss_pred hcCcHHHHhhh
Q 039637 147 SGKLLKDAYIV 157 (159)
Q Consensus 147 ~~g~~~~A~~~ 157 (159)
=.|.+++|+++
T Consensus 170 PLG~~~eAeel 180 (309)
T PF07163_consen 170 PLGHFSEAEEL 180 (309)
T ss_pred ccccHHHHHHH
Confidence 35667776665
No 274
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.47 E-value=0.011 Score=36.33 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=69.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 039637 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (159)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (159)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 46677778888889999999987766677888899999999998777777776611 11122345555555565
Q ss_pred HHHHHHHHHHHHhCC--------------------CCCCHHHHHHHHHHHHhcCc
Q 039637 116 HSEALSVYNMLRYSK--------------------RSMCKALHEKILHILISGKL 150 (159)
Q Consensus 116 ~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~ 150 (159)
+++|..++.++.... -.++..+|..++..|...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 655555555433211 12445677777777766654
No 275
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.44 E-value=0.85 Score=29.86 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCC--CChhhHHHHHHHHHccChHHHHHHHHHHHHHc
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAIS--PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (159)
..-.....+...|++.+|...|+.+...--. -.....-.+..++.+.|+++.|...+++..+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334455667899999999999999976321 11344556788899999999999999998875
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=1 Score=30.67 Aligned_cols=54 Identities=13% Similarity=-0.018 Sum_probs=32.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 104 SSLIFHLGKMRAHSEALSVYNML---RYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
-..|-.|.-..++..|.+.++.- .....+-+..+...|+.+| ..|+.+++.+++
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33444455556777777777763 3333344556667777776 356666666554
No 277
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.24 E-value=0.2 Score=23.12 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLD 57 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 57 (159)
+++.+...|...|++++|..++.+..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555554443
No 278
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.20 E-value=0.87 Score=28.99 Aligned_cols=149 Identities=13% Similarity=-0.026 Sum_probs=60.5
Q ss_pred HhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHH-HHHccChHHH
Q 039637 6 CRSGCFEETKQLAGDFEAK-YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIK-YFCKEKMYML 83 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~ 83 (159)
...+++..+...+...... ........+......+...+++..+...+.........+ ......... .+...|+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 148 (291)
T COG0457 70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEE 148 (291)
T ss_pred HHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444321 112233444444444455555555555555554422211 111111122 4455555555
Q ss_pred HHHHHHHHHHcCC--CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 84 AYRTMVDMHRKGH--QPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 84 a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
+...+.+...... ......+......+...++.+.+...+..............+..+-..+...++++.|.
T Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 149 ALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHH
Confidence 5555555533111 01122222223334444555555555554443211112334444444444444444443
No 279
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=94.19 E-value=0.7 Score=27.91 Aligned_cols=83 Identities=10% Similarity=0.097 Sum_probs=59.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcH
Q 039637 23 AKYDKYDVVLLNSMLCAYCRT--GDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEE 100 (159)
Q Consensus 23 ~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (159)
..|.+ +..-++.--.-|... -|..+..+.++.+..-.+.|++.....-+.+|.+.+|+.-|.++|+-++.+ +.+..
T Consensus 41 ~hg~e-t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k 118 (149)
T KOG4077|consen 41 EHGPE-TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQK 118 (149)
T ss_pred hcCcc-cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHH
Confidence 33444 444444444444432 256678888888888899999999999999999999999999999998864 33444
Q ss_pred HHHHHHH
Q 039637 101 ELCSSLI 107 (159)
Q Consensus 101 ~~~~~li 107 (159)
..|..++
T Consensus 119 ~~Y~y~v 125 (149)
T KOG4077|consen 119 QVYPYYV 125 (149)
T ss_pred HHHHHHH
Confidence 4565554
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.19 E-value=0.84 Score=28.75 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=66.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc-cChHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK-EKMYM 82 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~ 82 (159)
.-.+.++.+++..++..+.-..|. ....-..-...+.+.|+|.+|..+|+++.+.+ |.......|+..|.. .|++
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~- 94 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDP- 94 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCCh-
Confidence 345678999999999998866554 22222333344568999999999999987643 444444445544433 3444
Q ss_pred HHHHHH-HHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 039637 83 LAYRTM-VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALS 121 (159)
Q Consensus 83 ~a~~~~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (159)
.++.+ +++.+.+-.|+ +- .++..+....+...|..
T Consensus 95 -~Wr~~A~evle~~~d~~--a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 95 -SWRRYADEVLESGADPD--AR-ALVRALLARADLEPAHE 130 (160)
T ss_pred -HHHHHHHHHHhcCCChH--HH-HHHHHHHHhccccchhh
Confidence 34443 55666553333 33 45555555555555544
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.14 E-value=0.89 Score=28.90 Aligned_cols=100 Identities=14% Similarity=0.206 Sum_probs=65.1
Q ss_pred HHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 49 VMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 49 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..+....+.+.++.|+...+..+++.+.+.|++... .++.+.++-+|.......+-.+.. ....+.++=-+|..
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 355667777889999999999999999999987554 555666666665555444433322 23344444444443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 129 SKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.- ...+..+++.+...|++-+|.++.
T Consensus 87 RL----~~~~~~iievLL~~g~vl~ALr~a 112 (167)
T PF07035_consen 87 RL----GTAYEEIIEVLLSKGQVLEALRYA 112 (167)
T ss_pred Hh----hhhHHHHHHHHHhCCCHHHHHHHH
Confidence 20 024567778888888888887654
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.01 E-value=0.88 Score=28.32 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=32.2
Q ss_pred hcCChHHHHHHHHHhHhcCCCCChhhHHH-HHHHHHccChHHHHHHHHHHHHHcC
Q 039637 42 RTGDMESVMHVMRKLDELAISPDYNTFHI-LIKYFCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~g 95 (159)
..++..++..++.-|.- +.|+..-.-. -...+...|+|.+|..+|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36677777777777765 4555433321 1223556677778877777777654
No 283
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.00 E-value=1.1 Score=32.02 Aligned_cols=87 Identities=11% Similarity=0.017 Sum_probs=53.9
Q ss_pred HHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH
Q 039637 38 CAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (159)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (159)
+-|.+.|++++|+++|..-.. +.| |..++..-..+|.+.+.+..|+.--...+.... .-+..|+.-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence 457888999999999987655 557 788888888889888888766654444433211 1122333333333334555
Q ss_pred HHHHHHHHHHH
Q 039637 117 SEALSVYNMLR 127 (159)
Q Consensus 117 ~~a~~~~~~~~ 127 (159)
.+|.+=++...
T Consensus 182 ~EAKkD~E~vL 192 (536)
T KOG4648|consen 182 MEAKKDCETVL 192 (536)
T ss_pred HHHHHhHHHHH
Confidence 55555555444
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.98 E-value=1.5 Score=30.77 Aligned_cols=96 Identities=9% Similarity=0.105 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC----hHHHHHHHHHhHhcCCCCCh--hhHHHHHHHHHccCh
Q 039637 10 CFEETKQLAGDFEAKYD---KYDVVLLNSMLCAYCRTGD----MESVMHVMRKLDELAISPDY--NTFHILIKYFCKEKM 80 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~----~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~ 80 (159)
...+|.++|+.|++..+ .++-.++..++.. ...+ .+.++.+|+.+...|+..+. ...+.++..+.....
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 46789999999998764 2445566666555 3333 35678899999998886653 445555554433333
Q ss_pred --HHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 81 --YMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 81 --~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
..++.++++.+.+.|+++....|..+.
T Consensus 196 ~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 457889999999999998877776553
No 285
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.91 E-value=0.2 Score=23.11 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 101 ELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467778888888888888888887665
No 286
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.79 E-value=0.98 Score=28.12 Aligned_cols=89 Identities=8% Similarity=0.119 Sum_probs=54.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc--ChHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDK-YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE--KMYM 82 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~~~ 82 (159)
...++++++..+++.|.-..|. +...++... .+...|+|.+|..+|++..+.+. . ..|..-+.++|-. ||.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~--~-~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAG--A-PPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCC--C-chHHHHHHHHHHHhcCChH
Confidence 4578899999999988765444 233344433 45689999999999999987542 2 2444444444433 4433
Q ss_pred HHHHHH-HHHHHcCCCCcHH
Q 039637 83 LAYRTM-VDMHRKGHQPEEE 101 (159)
Q Consensus 83 ~a~~~~-~~m~~~g~~~~~~ 101 (159)
++.+ .+++..+-.|+..
T Consensus 96 --Wr~~A~~~le~~~~~~a~ 113 (153)
T TIGR02561 96 --WHVHADEVLARDADADAV 113 (153)
T ss_pred --HHHHHHHHHHhCCCHhHH
Confidence 3332 4555555444443
No 287
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.73 E-value=2.1 Score=31.80 Aligned_cols=102 Identities=12% Similarity=-0.004 Sum_probs=62.3
Q ss_pred HHhcCCHHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 5 FCRSGCFEETKQLAG--DFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..-.|+++++.+..+ .+. +..+....+.++.-+-+.|.++.|+.+-.. +. .-.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll---~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL---PNIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTG---GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhc---ccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence 345677777666653 111 112345577888888888888888776432 21 2344556678888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
.|.++..+ ..++..|..|.....+.|+++.|...|++..
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 87664332 2467799999999999999999999987765
No 288
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=93.40 E-value=1.8 Score=29.97 Aligned_cols=87 Identities=9% Similarity=0.101 Sum_probs=54.1
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHH-----
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFC----- 76 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----- 76 (159)
|+++...|+|.+++...-..-+..-+....+...-|-.|.+.+.+..+.++-..=.+.--.-+...|..+..-|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 577888888888887765554433334556666677778888888877776655444311222344655555543
Q ss_pred ccChHHHHHHHH
Q 039637 77 KEKMYMLAYRTM 88 (159)
Q Consensus 77 ~~~~~~~a~~~~ 88 (159)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777776655
No 289
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.35 E-value=0.48 Score=25.99 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=24.6
Q ss_pred hcCChHHHHHHHHHhHhcCCCCC--hhhHHHHHHHHHccChHHHHHHH
Q 039637 42 RTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~ 87 (159)
...+.++|+..|....+.-..|. -.++..++.+++..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665555433222 23445566666666666665554
No 290
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.25 E-value=0.31 Score=23.51 Aligned_cols=21 Identities=5% Similarity=-0.056 Sum_probs=9.6
Q ss_pred HHHHccChHHHHHHHHHHHHH
Q 039637 73 KYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~ 93 (159)
.+|...|+.+.|.++++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHcCChHHHHHHHHHHHH
Confidence 344444444444444444443
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.81 E-value=0.92 Score=31.60 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHH-----HcCCCCcHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMH-----RKGHQPEEEL 102 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~g~~~~~~~ 102 (159)
+++.....|..+|.+.+|.++-++...-. +.+...+-.++..+...||--.+.+.++.+. +.|+..+-.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 45666678888888888888888777632 2355666688888888888666666666654 2355544433
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.80 E-value=0.3 Score=21.45 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
+|..+...|.+.|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666666666666666666554
No 293
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.63 E-value=0.37 Score=23.23 Aligned_cols=27 Identities=11% Similarity=-0.077 Sum_probs=23.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRYSKR 131 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~~~~ 131 (159)
-+..+|...|+.+.|..+++++...+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 377899999999999999999986543
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.55 E-value=0.29 Score=21.97 Aligned_cols=22 Identities=5% Similarity=0.076 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHhcCcHHHHh
Q 039637 134 CKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
+...|..+-..|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444555555555555555543
No 295
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.48 E-value=3.9 Score=31.38 Aligned_cols=121 Identities=17% Similarity=0.095 Sum_probs=79.9
Q ss_pred HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHhHhcCCCCChhhHHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEA-------KYDKYDVVLLNSMLCAYCRTG-----DMESVMHVMRKLDELAISPDYNTFHILI 72 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~ll 72 (159)
++...+.+.|...|+...+ .| .+.....+...|.+.. +...|+.++.+..+.|. |+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 5577899999999998866 34 3335566667776643 67789999998888764 5444433333
Q ss_pred HHHHc-cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH--HccCCHHHHHHHHHHHHhCC
Q 039637 73 KYFCK-EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL--GKMRAHSEALSVYNMLRYSK 130 (159)
Q Consensus 73 ~~~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~ 130 (159)
.-... ..+...|.++|...-+.|+.+ ..-+-+++... ....+.+.|..++++.-..+
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 32222 356789999999999988643 22222222222 23468899999999888777
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=4 Score=32.68 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=51.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 83 (159)
-+.+.|++++|...|-+-... ..|+ -+|.-|.+.........+++.+.+.|+ -+...-+.|+++|.+.++.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHH
Confidence 355678888888887554421 2222 235555666667777777888888877 344455668888888888776
Q ss_pred HHHHHHH
Q 039637 84 AYRTMVD 90 (159)
Q Consensus 84 a~~~~~~ 90 (159)
-.++.+.
T Consensus 450 L~efI~~ 456 (933)
T KOG2114|consen 450 LTEFISK 456 (933)
T ss_pred HHHHHhc
Confidence 6555443
No 297
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.36 E-value=2.7 Score=29.26 Aligned_cols=112 Identities=9% Similarity=0.072 Sum_probs=78.2
Q ss_pred HHHHHHHHHhHh-cCCCCChhhHHHHHHHHHc-cCh-HHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 039637 47 ESVMHVMRKLDE-LAISPDYNTFHILIKYFCK-EKM-YMLAYRTMVDMHR-KGHQPEEELCSSLIFHLGKMRAHSEALSV 122 (159)
Q Consensus 47 ~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~~~-~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (159)
.+|+.+|+..-- ..+--|..+...+++.... .+. ...--++.+-+.. .|..++..+...++..+++.+++.+-.++
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~f 224 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQF 224 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHH
Confidence 345555552211 2355677778888888766 222 2222233333332 34568888999999999999999999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 123 YNMLRYS-KRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 123 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++..... +...|..-|..+|+...+.|+..-...++
T Consensus 225 W~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 225 WEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 9977654 56778888999999999999988776654
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.32 E-value=0.5 Score=20.77 Aligned_cols=28 Identities=21% Similarity=0.027 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 101 ELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.+|..+...|...|++++|...|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777776654
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.17 E-value=3.2 Score=34.45 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=64.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC
Q 039637 35 SMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR 114 (159)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 114 (159)
+..+.+.+...+++|.-.|...-+ ..-.+.+|-.+|+|++|..+..++.....+ -..+-..|+.-+...+
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcc
Confidence 333344455666666666654322 234567777888888888877776532111 1112256788888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 115 AHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
++-+|.++....... | .-.+..|++...|++|..+
T Consensus 1014 kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRV 1048 (1265)
T ss_pred cchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHH
Confidence 888888888766542 1 2345566777777777654
No 300
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.08 E-value=4.2 Score=30.88 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=28.9
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 59 (159)
+..++++.++.-...+-.+|...| .+-..|-.++..|... ..+.-..+|.++++.
T Consensus 73 ~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 73 LTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred HHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 344455555555555555555433 2445555566666555 345555556555553
No 301
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=91.97 E-value=1.6 Score=27.04 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=36.5
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
+...+.+.|..+++.-- .++..+.+.++.-.|..+++.+...+.+.+..|.-..++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34455556666554333 4556666665556666666666666666655555555566665554
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.95 E-value=4.3 Score=30.66 Aligned_cols=118 Identities=11% Similarity=0.122 Sum_probs=76.6
Q ss_pred hcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHH
Q 039637 7 RSGCFEETK-QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAY 85 (159)
Q Consensus 7 ~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 85 (159)
..|++..|- +++..+....-.|+....- ...+...|+++.+...+...... +.....+-.+++....+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 346655554 4455555443344544433 33456789999998888765442 3445677888999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..-..|+...++ ++.+.....-..-..|-+|++.-.|+++..
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 988888866543 333443333333455778888888887764
No 303
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.94 E-value=2.1 Score=27.15 Aligned_cols=148 Identities=16% Similarity=0.060 Sum_probs=92.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHhHhcCCCC----ChhhHHHHHHHHHccCh
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLC-AYCRTGDMESVMHVMRKLDELAISP----DYNTFHILIKYFCKEKM 80 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~ 80 (159)
...++...+.+.+.........+ ......... .+...|+++.+...+.+... ..| ....+......+...++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 182 (291)
T COG0457 106 EALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGR 182 (291)
T ss_pred HHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcC
Confidence 34455677777777776544442 222333333 77888899999999888855 333 23333344444667788
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
.+.+...+..............+..+...+...++.+.|...+......... ....+......+...+..+++...
T Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 258 (291)
T COG0457 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEA 258 (291)
T ss_pred HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHH
Confidence 8888888888876532213567777888888888888888888877753222 233334444444466666666543
No 304
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=3.2 Score=29.00 Aligned_cols=120 Identities=11% Similarity=0.126 Sum_probs=76.5
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccCh
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKM 80 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~ 80 (159)
...|...|+++.|..++..+-..-..........-|..+.+.....+...+-.+.-. .| |...=..+-..+...|+
T Consensus 175 a~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~ 251 (304)
T COG3118 175 AECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGR 251 (304)
T ss_pred HHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCC
Confidence 467889999999999998875432222223323345555555555554444444443 36 45555567788899999
Q ss_pred HHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 039637 81 YMLAYRTMVDMHRKGH-QPEEELCSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (159)
.+.|.+.+-.++++.. .-|...-..++..+.-.|.-|.+..-++
T Consensus 252 ~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 252 NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999888777665432 2355677788888888885554443333
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.85 E-value=0.32 Score=20.25 Aligned_cols=18 Identities=22% Similarity=0.008 Sum_probs=8.4
Q ss_pred HHHHHHccCCHHHHHHHH
Q 039637 106 LIFHLGKMRAHSEALSVY 123 (159)
Q Consensus 106 li~~~~~~g~~~~a~~~~ 123 (159)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444444444444444443
No 306
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=3.6 Score=29.38 Aligned_cols=88 Identities=9% Similarity=-0.054 Sum_probs=59.8
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHc---CCCCcHHHH--HHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 039637 68 FHILIKYFCKEKMYMLAYRTMVDMHRK---GHQPEEELC--SSLIFHLGKMRAHSEALSVYNMLRY-----SKRSMCKAL 137 (159)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 137 (159)
...++...-+.+|.++|+++++++.+. --.|+...| ....+++...|+..++.+.+++.++ .+++|+.++
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 345556666677899999999998753 235666666 4556777788999999999888876 577775443
Q ss_pred -HH-HHHHHHHhcCcHHHHh
Q 039637 138 -HE-KILHILISGKLLKDAY 155 (159)
Q Consensus 138 -~~-~l~~~~~~~g~~~~A~ 155 (159)
|. .--..|-+.|++..++
T Consensus 158 ~fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred hHHHHHHHHHHHHHhHHHHH
Confidence 33 3335555566665544
No 307
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.67 E-value=2.7 Score=30.21 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=62.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
+-|.+.|++++|+.+|..-....+. |.+++..-..+|.+...+..|+.=-...+..+ ..-.-.|+.-..+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 3578999999999999887765433 88999999999999998887765544443311 111234555555555556666
Q ss_pred HHHHHHHHHHHcCCCCc
Q 039637 83 LAYRTMVDMHRKGHQPE 99 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~ 99 (159)
+|.+-++..++. +|+
T Consensus 183 EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHhHHHHHhh--Ccc
Confidence 776666666653 455
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.66 E-value=3.2 Score=28.68 Aligned_cols=155 Identities=10% Similarity=0.058 Sum_probs=86.8
Q ss_pred hhHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc
Q 039637 2 ISAFCRSGCFE---ETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE 78 (159)
Q Consensus 2 l~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 78 (159)
+.+|...+..+ +|..+.+.+....+. .+.++-.-+..+.+.++.+++.+.+.+|... +.-....+..++...-..
T Consensus 91 a~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l 168 (278)
T PF08631_consen 91 ANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQL 168 (278)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHH
Confidence 45566655544 466666667655444 3455556667777789999999999999986 222345555555554222
Q ss_pred --ChHHHHHHHHHHHHHcCCCCcHH-HH-HHHHHH---HHccC------CHHHHHHHHHHHHh-CCCCCCHHHHHHHH--
Q 039637 79 --KMYMLAYRTMVDMHRKGHQPEEE-LC-SSLIFH---LGKMR------AHSEALSVYNMLRY-SKRSMCKALHEKIL-- 142 (159)
Q Consensus 79 --~~~~~a~~~~~~m~~~g~~~~~~-~~-~~li~~---~~~~g------~~~~a~~~~~~~~~-~~~~~~~~~~~~l~-- 142 (159)
.....+...+..++..-+.|+.. .. ..++.. ..+.+ .++....+++.+.. .+.+.+..+-.++.
T Consensus 169 ~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~L 248 (278)
T PF08631_consen 169 AEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTL 248 (278)
T ss_pred HhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 33456667776666554455443 11 111111 11111 14455555554332 34455555433333
Q ss_pred -----HHHHhcCcHHHHhhhh
Q 039637 143 -----HILISGKLLKDAYIVV 158 (159)
Q Consensus 143 -----~~~~~~g~~~~A~~~~ 158 (159)
..+.+.+++++|.+.|
T Consensus 249 LW~~~~~~~~~k~y~~A~~w~ 269 (278)
T PF08631_consen 249 LWNKGKKHYKAKNYDEAIEWY 269 (278)
T ss_pred HHHHHHHHHhhcCHHHHHHHH
Confidence 4467788999988766
No 309
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.54 E-value=3.6 Score=33.27 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhcC---CCCChhhHHHHHHHHHccChH--HHHHHHHHHHHHcCCCCcHHHH----
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKLDELA---ISPDYNTFHILIKYFCKEKMY--MLAYRTMVDMHRKGHQPEEELC---- 103 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~g~~~~~~~~---- 103 (159)
|..|+..|...|+.++|+++|.+....- -.--...+-.++....+.+.. +-.+++-.+..+....-...++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 7889999999999999999999887632 111123333455555555544 5555655555543221111111
Q ss_pred --------HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039637 104 --------SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (159)
Q Consensus 104 --------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (159)
...+-.|......+.+..+++.+......++....+.++..|++.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 123445667777888888999888766667777778888777654
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.52 E-value=0.63 Score=20.27 Aligned_cols=27 Identities=11% Similarity=-0.078 Sum_probs=18.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 102 LCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.+..+...+.+.|++++|.+.|++...
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667777777888888887776654
No 311
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=91.44 E-value=1.8 Score=26.81 Aligned_cols=63 Identities=10% Similarity=-0.035 Sum_probs=45.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 17 LAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
+.+.+.+.|..+ +..-..+++.+.+.++.-.|.++++++.+.+...+..|.-.-|+.+...|-
T Consensus 8 ~~~~lk~~glr~-T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRL-TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCc-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 444567777763 345667788888888888899999999988777776666667777766654
No 312
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=91.41 E-value=2.8 Score=27.47 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=44.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCC--------------CCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 104 SSLIFHLGKMRAHSEALSVYNMLRYSKRS--------------MCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
-+++..|-+.-++.+..++++.|....+. +.-.+.+.....+.+.|.+|.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 46677788888999999999988764432 344567889999999999999998874
No 313
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=90.63 E-value=2.3 Score=27.54 Aligned_cols=52 Identities=12% Similarity=0.005 Sum_probs=38.5
Q ss_pred ccChHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 77 KEKMYMLAYRTMVDMHRK-GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
...+.+......+...+. ...|++.++..++..+...|+.++|.++.+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555444444443322 3568999999999999999999999999998875
No 314
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=90.62 E-value=2.8 Score=26.04 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=52.3
Q ss_pred HhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhHhcC---C--CCChhhHHHHHHHHHccCh-HHHHHHHHHHHHH
Q 039637 22 EAKYDKYDV--VLLNSMLCAYCRTGDMESVMHVMRKLDELA---I--SPDYNTFHILIKYFCKEKM-YMLAYRTMVDMHR 93 (159)
Q Consensus 22 ~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~--~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~ 93 (159)
.+++..+++ ...|++++-....+.+...+.+++.+.--. + ..+..+|.+++++.+...- ---+..+|..|.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 333444443 235666666666667777666666653210 0 1234556666666655544 3344556666666
Q ss_pred cCCCCcHHHHHHHHHHHHccC
Q 039637 94 KGHQPEEELCSSLIFHLGKMR 114 (159)
Q Consensus 94 ~g~~~~~~~~~~li~~~~~~g 114 (159)
.+.++++.-|..++.++.+-.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcCC
Confidence 566666666766666665543
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.60 E-value=3.8 Score=27.55 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHccChHHHHHHHHHHHHHcC--CCCcHHHHHHHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYMLAYRTMVDMHRKG--HQPEEELCSSLIF 108 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~ 108 (159)
+.+.-++.+.+.+...+++.....-++. +|+. .+-..+++.+|-.|+|++|..-++-.-+.. ..+...+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455677888899999999988877764 4654 455577899999999999987776655432 2344567777775
Q ss_pred H
Q 039637 109 H 109 (159)
Q Consensus 109 ~ 109 (159)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 316
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.46 E-value=5.9 Score=29.59 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=77.5
Q ss_pred HhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhc---CChHHHHHHHHHhHhcCCCCChh----hHHHHHH
Q 039637 6 CRSGC-FEETKQLAGDFEAKYDKYDVVLLNSMLC----AYCRT---GDMESVMHVMRKLDELAISPDYN----TFHILIK 73 (159)
Q Consensus 6 ~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~~~~~---~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~ 73 (159)
.+.|+ -++|+.+++...+-... |..+=|.+.. +|.+. ..+.....+-+-..+.|+.|-.. .-|.|-+
T Consensus 390 W~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 34444 77888888877753222 5444444332 23221 23444455555556678877433 3344444
Q ss_pred H--HHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 74 Y--FCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 74 ~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
| ...+|++.++.-.-.++.+ +.|++.+|..+.-+.....++++|..++.++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 4 4567999888766666665 678999999999999999999999999987653
No 317
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=89.91 E-value=3.6 Score=26.23 Aligned_cols=61 Identities=8% Similarity=-0.027 Sum_probs=47.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 21 FEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 21 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
+.+.|.. .+..-..++..+...++.-.|.+++..+.+.+..++..|.-.-|+.+...|-..
T Consensus 17 L~~~GlR-~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVR-LTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCC-CCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 5666776 445555777777777778899999999999988888888777888888877553
No 318
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.73 E-value=5.1 Score=27.72 Aligned_cols=124 Identities=12% Similarity=0.095 Sum_probs=76.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCCHH------HHHHHHHHHHhcCChHHHHHHHHHhHhc--------CCCCC----
Q 039637 5 FCRSGCFEETKQLAGDFEAKY--DKYDVV------LLNSMLCAYCRTGDMESVMHVMRKLDEL--------AISPD---- 64 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~~~~~---- 64 (159)
..+.|+.+.|..++.+..... ..|+.. .||.-...+.+..+++.|...+++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999887543 222222 3444444544443777776666554432 12233
Q ss_pred -hhhHHHHHHHHHccChHH---HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 65 -YNTFHILIKYFCKEKMYM---LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 65 -~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
..+...++.++...+..+ +|..+++.+.... .-.+.++-.-+..+.+.++.+.+.+++..|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 244566777777776654 4555666664432 112445555677777788999999999988864
No 319
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.58 E-value=6.7 Score=28.92 Aligned_cols=89 Identities=8% Similarity=0.010 Sum_probs=65.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccCh
Q 039637 5 FCRSGCFEETKQLAGDFEAKY---DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKM 80 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 80 (159)
..+.|++..|.+.|.+-.... ..|+...|-.......+.|+..+|+.--++..+ +.|. ...|-.-..++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999887654 346677788888889999999999988877766 3222 1222233344566689
Q ss_pred HHHHHHHHHHHHHcC
Q 039637 81 YMLAYRTMVDMHRKG 95 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g 95 (159)
|++|.+-++...+..
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998887654
No 320
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.29 E-value=1 Score=19.32 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=17.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.+..++.+.|+.++|...|+++..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 355666677788888888877764
No 321
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=89.28 E-value=5.8 Score=27.78 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhCC-C---CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHH
Q 039637 11 FEETKQLAGDFEAKY-D---KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYR 86 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~-~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 86 (159)
.++|.+.|+.+...+ . ..++.....++....+.|+.++...+++.... .++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 677888888887642 2 44667777788888888887776666666654 3567777889999988999988889
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccC--CHHHHHHHHH
Q 039637 87 TMVDMHRKGHQPEEELCSSLIFHLGKMR--AHSEALSVYN 124 (159)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~ 124 (159)
+++.....+..++.... .++.++...+ ..+.+..++.
T Consensus 223 ~l~~~l~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIR-YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTTHH-HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHHHH-HHHHHHhcCChhhHHHHHHHHH
Confidence 99988875422333344 4444444233 2366666654
No 322
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.03 E-value=6.4 Score=28.66 Aligned_cols=124 Identities=10% Similarity=-0.022 Sum_probs=76.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc----CCCCChhhH-----
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK-----YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISPDYNTF----- 68 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~----- 68 (159)
.++.-.+.++++++-|+...+- ++.....++-.|-..|.+..|+++|.-...+..+. ++..-..-|
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 3445566788888888765422 12234457888899999999999887776665432 221111112
Q ss_pred HHHHHHHHccChHHHHHHHHHHHH----HcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMH----RKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNML 126 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~----~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (159)
-.|.-++...|.+..|.+.-++.. +.|..+. ....-.+.+.|-..|+.|.|+.-|+..
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 234445666677766666655543 4454442 334456778888899999988877743
No 323
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=88.93 E-value=3.9 Score=25.38 Aligned_cols=98 Identities=8% Similarity=0.099 Sum_probs=70.9
Q ss_pred HhHhcCCCCCh--hhHHHHHHHHHccChHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHccCC-HHHHHHHHHHH
Q 039637 55 KLDELAISPDY--NTFHILIKYFCKEKMYMLAYRTMVDMHRKGH-----QPEEELCSSLIFHLGKMRA-HSEALSVYNML 126 (159)
Q Consensus 55 ~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~ 126 (159)
.|.+.+..++. ...+.++.-....+.+.....+++.+..... ..+...|++++.+.....- ---+..+|+-+
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34555555554 3456777777888888888888887753210 2456689999999977766 44556788999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCcHH
Q 039637 127 RYSKRSMCKALHEKILHILISGKLLK 152 (159)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (159)
++.+.+++..-|..++.++.+....+
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 98888999999999999988764433
No 324
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=88.91 E-value=1.7 Score=21.25 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=15.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039637 112 KMRAHSEALSVYNMLRYSKRSMCKALHEKIL 142 (159)
Q Consensus 112 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 142 (159)
+.|-++++..+++.|...|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444555555555555555554444443
No 325
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=88.69 E-value=1.8 Score=21.18 Aligned_cols=28 Identities=7% Similarity=0.118 Sum_probs=11.5
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEELCSSL 106 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (159)
|-.+++..++++|.+.|...+...+..+
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 3333444444444444444444444333
No 326
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=6.6 Score=27.61 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=10.6
Q ss_pred HHHHHHHhcCcHHHHhhh
Q 039637 140 KILHILISGKLLKDAYIV 157 (159)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~ 157 (159)
.++..+.+.|.+.+|..+
T Consensus 130 Kli~l~y~~~~Ysdalal 147 (421)
T COG5159 130 KLIYLLYKTGKYSDALAL 147 (421)
T ss_pred HHHHHHHhcccHHHHHHH
Confidence 455566666666666544
No 327
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=88.49 E-value=3 Score=23.43 Aligned_cols=65 Identities=15% Similarity=0.005 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
.+++..+.+.|+ .+......+-.+-...|+.+.|.++++.+. .| | ..|..++.++-..|.-+-|.
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 445555555553 233333333333334455666666666555 22 1 24455666665555554443
No 328
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.40 E-value=2.5 Score=23.24 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=27.8
Q ss_pred ccChHHHHHHHHHHHHHcCCCC-cH-HHHHHHHHHHHccCCHHHHHHH
Q 039637 77 KEKMYMLAYRTMVDMHRKGHQP-EE-ELCSSLIFHLGKMRAHSEALSV 122 (159)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~-~~-~~~~~li~~~~~~g~~~~a~~~ 122 (159)
...+..+|+..|...++.-..+ +. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777776666543222 21 2445667777777777776654
No 329
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.32 E-value=5.3 Score=27.14 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=25.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRY----SK-RSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
.+...|.+.|++++|.++|+.+.. .| ..+...+...+..+..+.|+.+...
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 445555555555555555554431 11 2333444455555555555555443
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=11 Score=29.40 Aligned_cols=100 Identities=10% Similarity=-0.005 Sum_probs=62.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
..+.|+.+.|.++..+. -+..-|..|-++....+++..|.+.|.+... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 34556666666654322 2667788888888888998888888876543 44566666666766554
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (159)
..+-....+.|. .| ...-+|...|+++++..++..
T Consensus 712 ~~la~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 444444445443 22 233345567777777776643
No 331
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=88.05 E-value=0.64 Score=28.33 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
-..|-.+|..|++.|.+|| .|+.|+..
T Consensus 111 k~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred CCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3445566666666666555 45555543
No 332
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=87.55 E-value=6 Score=27.99 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=27.5
Q ss_pred HHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHH
Q 039637 50 MHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 50 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
.++|+.|.+.++.|.-.+|.-+.-.+.+.=.+..++.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 45666666666777666666555555555555666667766664
No 333
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=87.44 E-value=5.9 Score=25.65 Aligned_cols=54 Identities=15% Similarity=0.001 Sum_probs=39.3
Q ss_pred HhcCChHHHHHHHHHhHhc-CCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHc
Q 039637 41 CRTGDMESVMHVMRKLDEL-AISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (159)
...++.+......+...+. ...|+..+|..++.++...|+.++|.++..++...
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455554444333333321 25799999999999999999999999999998864
No 334
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=87.43 E-value=9.7 Score=28.30 Aligned_cols=123 Identities=15% Similarity=0.034 Sum_probs=84.6
Q ss_pred HHhcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-----CCChhhHHHHHHH
Q 039637 5 FCRSGCFEETKQLAGDF----EAKYDK-YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-----SPDYNTFHILIKY 74 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~----~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~ 74 (159)
|.-.|+++.|+...+.- ++-|-. .-...+..+.+++.-.|+++.|.+.|+.-....+ .....+.-.|-+.
T Consensus 205 yYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt 284 (639)
T KOG1130|consen 205 YYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT 284 (639)
T ss_pred eeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH
Confidence 34458888888776532 222322 1235678888889999999999999887553211 2234556678888
Q ss_pred HHccChHHHHHHHHHHHHH----cC-CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 75 FCKEKMYMLAYRTMVDMHR----KG-HQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~----~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
|.-..++++|+.++.+-+. .+ ..-....|.+|..+|...|..++|..+.+.-.
T Consensus 285 ytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 285 YTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888899999988765442 11 12345688899999999999999998776443
No 335
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=87.31 E-value=3.6 Score=23.03 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=26.6
Q ss_pred HHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHH
Q 039637 51 HVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMH 92 (159)
Q Consensus 51 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (159)
++|+-....|+..|...|.++++...-+-.++...+++..|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566656666666666666666666665556666666666654
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.28 E-value=7.1 Score=27.48 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=32.0
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 039637 70 ILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (159)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (159)
...+.|..+|.+.+|.++.+..+... +.+...+-.++..+...|+--.|.+-++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445666666666666666655542 345555666666666666655555544444
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.06 E-value=11 Score=28.62 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=59.0
Q ss_pred HhcCChHHHH-HHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 039637 41 CRTGDMESVM-HVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119 (159)
Q Consensus 41 ~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 119 (159)
...|+.-.|. +++.-+....-.|+. .......+...|+++.+...+...... +.....+..++++..-+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3456665554 444444443223443 333334466779999998888766543 234556888999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 039637 120 LSVYNMLRYSKRS 132 (159)
Q Consensus 120 ~~~~~~~~~~~~~ 132 (159)
..+-+.|....+.
T Consensus 377 ~s~a~~~l~~eie 389 (831)
T PRK15180 377 LSTAEMMLSNEIE 389 (831)
T ss_pred HHHHHHHhccccC
Confidence 9999888865544
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.57 E-value=4.5 Score=26.15 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----C-------hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG----D-------MESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~-------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 79 (159)
+++|.+-|++...-+|. ...++..+-++|...+ + +++|.+.|++... ..|+..+|+.-+....+
T Consensus 51 iedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k-- 125 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK-- 125 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh--
Confidence 44555555555543333 3456666666665433 3 3445555555555 57888999888877753
Q ss_pred hHHHHHHHHHHHHHcC
Q 039637 80 MYMLAYRTMVDMHRKG 95 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g 95 (159)
|=+++.++.+.+
T Consensus 126 ----ap~lh~e~~~~~ 137 (186)
T PF06552_consen 126 ----APELHMEIHKQG 137 (186)
T ss_dssp ----HHHHHHHHHHSS
T ss_pred ----hHHHHHHHHHHH
Confidence 334455555443
No 339
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=86.20 E-value=3 Score=29.17 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=21.8
Q ss_pred CcHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 039637 98 PEEELC-SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKAL 137 (159)
Q Consensus 98 ~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 137 (159)
|+...| +.-|....+.|++++|++++++....|..--..+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 444333 4556666666666666666666665555433333
No 340
>PF13934 ELYS: Nuclear pore complex assembly
Probab=85.69 E-value=8.6 Score=25.82 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=42.5
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039637 33 LNSMLCAYC--RTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (159)
Q Consensus 33 ~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (159)
|...++++. ..+++++|.+++..- .+.|+ --.-++.++...|+.+.|..++..+.-.. .+...-..++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-
Confidence 455555554 345566666665221 11111 11235556666677776766666543211 122222223333
Q ss_pred HccCCHHHHHHHHHHHHh
Q 039637 111 GKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 111 ~~~g~~~~a~~~~~~~~~ 128 (159)
..++.+.+|..+-+....
T Consensus 151 La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HHcCCHHHHHHHHHhCch
Confidence 455677777666555443
No 341
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=85.67 E-value=7.7 Score=25.26 Aligned_cols=20 Identities=5% Similarity=0.022 Sum_probs=10.3
Q ss_pred HHHccChHHHHHHHHHHHHH
Q 039637 74 YFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~ 93 (159)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 35555555555555555443
No 342
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.64 E-value=10 Score=29.93 Aligned_cols=52 Identities=13% Similarity=-0.022 Sum_probs=31.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHhcCcHHHHhhhh
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA-----------LHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.++......+++++|.++-+...+. .|+.. -|.-.-.+|.++|+-.+|..++
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vL 840 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVL 840 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHH
Confidence 5667777888899998887766542 22211 1333345666666666666554
No 343
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.51 E-value=5.3 Score=23.24 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=21.6
Q ss_pred HHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcC
Q 039637 39 AYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (159)
.+...|+|++|+.+...+ ..||...|..|-. .+.|..++....+..|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344445555555444433 2344444443322 23344444444444444443
No 344
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.46 E-value=2 Score=18.21 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLC 38 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 38 (159)
|+++.|..+|+.+....+ -+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 456777777777775544 36666665554
No 345
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=85.40 E-value=5.5 Score=23.33 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=17.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 102 LCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
-|..|+..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456666666677777777777666654
No 346
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=85.10 E-value=4 Score=21.50 Aligned_cols=49 Identities=6% Similarity=0.014 Sum_probs=23.8
Q ss_pred CChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 039637 63 PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (159)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (159)
|+...++.++..+++..-.++++..+.+..+.|. .+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555543 344444444444433
No 347
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=85.03 E-value=5 Score=22.55 Aligned_cols=67 Identities=12% Similarity=-0.065 Sum_probs=49.9
Q ss_pred HHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHH
Q 039637 48 SVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120 (159)
Q Consensus 48 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 120 (159)
.+.+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. .| |+ .|..+++++-..|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhh
Confidence 36778888888885 455555544444446689999999999998 54 44 7889999999988877664
No 348
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=84.88 E-value=1.9 Score=25.56 Aligned_cols=51 Identities=8% Similarity=-0.019 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
+..-..++..+...+..-.|.++++.+.+.+...+..|.-.-|+.+...|-
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 344556777777777788888888888887777777766666777766654
No 349
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.82 E-value=1.9 Score=17.50 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKL 56 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m 56 (159)
|..+...+...+++++|...|.+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444444443
No 350
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=84.74 E-value=4 Score=21.18 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
++...++++.+... ..|-.-.-.+|.++...|++++|.+..+++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444454444421 12444444566666677777777666666544
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=84.72 E-value=16 Score=28.03 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=9.8
Q ss_pred hHHHhcCCHHHHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDF 21 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~ 21 (159)
.-|.+.+++++|..++..|
T Consensus 416 ~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 416 SQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHhcCCHHHHHHHHHhC
Confidence 3455555555555555444
No 352
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=84.61 E-value=2.9 Score=29.28 Aligned_cols=29 Identities=14% Similarity=0.398 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhcCCC
Q 039637 34 NSMLCAYCRTGDMESVMHVMRKLDELAIS 62 (159)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 62 (159)
+..|....+.||.++|+.++++..+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44444445555555555555555444443
No 353
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=84.46 E-value=3.8 Score=24.03 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=32.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 35 SMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
.+++.+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555555566677888888888777666777766677777776654
No 354
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=84.27 E-value=6.2 Score=22.95 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=7.4
Q ss_pred HHHhcCCHHHHHHHHHH
Q 039637 4 AFCRSGCFEETKQLAGD 20 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~ 20 (159)
.|...|+.++|.+.+.+
T Consensus 11 ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 11 EYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHH
Confidence 34444445554444444
No 355
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.21 E-value=9.6 Score=25.10 Aligned_cols=88 Identities=11% Similarity=0.014 Sum_probs=55.6
Q ss_pred HHHHhcCChHHHHHHHHHhHhcCCCCChhhHH-----HHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 039637 38 CAYCRTGDMESVMHVMRKLDELAISPDYNTFH-----ILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (159)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (159)
..+...+++++|..-++..... |....+. .|-+.....|.+++|+..++.....+. .......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3466778888888777766542 3323333 333445667788888887776665443 22334445667777
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 039637 113 MRAHSEALSVYNMLRYSK 130 (159)
Q Consensus 113 ~g~~~~a~~~~~~~~~~~ 130 (159)
.|+-++|..-|++.....
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 888888888888777654
No 356
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.13 E-value=10 Score=25.31 Aligned_cols=89 Identities=17% Similarity=0.070 Sum_probs=54.4
Q ss_pred HHHHhcCChHHHHHHHHHhHhcCCCCCh------hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 039637 38 CAYCRTGDMESVMHVMRKLDELAISPDY------NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLG 111 (159)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 111 (159)
+-+.++|++++|..-|...+.. .|.. ..|..-..++.+.+.++.|++--...++.+.. .......-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 3456778888888888777763 3332 23444445566777777777766666655421 2223333345677
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 039637 112 KMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 112 ~~g~~~~a~~~~~~~~~~ 129 (159)
+...+++|..=|+++...
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 777788887777777654
No 357
>PRK11906 transcriptional regulator; Provisional
Probab=84.08 E-value=16 Score=27.45 Aligned_cols=143 Identities=6% Similarity=-0.046 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC
Q 039637 11 FEETKQLAGDFEAK-YDKYD-VVLLNSMLCAYCR---------TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (159)
Q Consensus 11 ~~~A~~~~~~~~~~-~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 79 (159)
.+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-.+.++.+ .-|......+-.+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 46788889888722 23343 4455554444332 223456777777777744 245666666666667778
Q ss_pred hHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 80 MYMLAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRY-SKRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
+++.+..+|++.... .|| ..+|-.......-.|+.++|...+++... +..+.-..+....++.|+..+ +++|..+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 899999999998875 354 44555555556678999999999998543 222222222223334555443 4555544
No 358
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=84.08 E-value=5.1 Score=26.31 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=44.0
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHcCCC--------------CcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 039637 70 ILIKYFCKEKMYMLAYRTMVDMHRKGHQ--------------PEEELCSSLIFHLGKMRAHSEALSVYNM 125 (159)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~--------------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (159)
.++..|-+.-+|.+++++++.|.+..+. +--..-|.....+.+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 5666788888999999999888753222 3345668888999999999999999984
No 359
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=84.06 E-value=1.2 Score=27.13 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=24.9
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039637 111 GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (159)
Q Consensus 111 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (159)
-..|.-..|.++|++|...|-+||.. +.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPddW--~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDDW--DALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCccH--HHHHHH
Confidence 34466778999999999999999864 566654
No 360
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=84.05 E-value=14 Score=26.75 Aligned_cols=58 Identities=16% Similarity=0.025 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHH
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFH 69 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 69 (159)
+-+|.-+++......+. |...--.++..|...|-...|..+|..+.-..+.-|.-.|.
T Consensus 199 l~~Ai~lLE~~l~~s~~-n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPH-NYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH
Confidence 44566666666655443 66666778888889999999999998887666655554444
No 361
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.91 E-value=17 Score=29.77 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=71.3
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHhcCCh--HHHHHHHHHhHhcCCCCChhhHH------
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAKY--DKY-DVVLLNSMLCAYCRTGDM--ESVMHVMRKLDELAISPDYNTFH------ 69 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~------ 69 (159)
|+..|...|+.++|+++|....... ..+ -...+..+++-+.+.+.. +-+.+.-.+..+..-.-....++
T Consensus 510 Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~ 589 (877)
T KOG2063|consen 510 LIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQE 589 (877)
T ss_pred HHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhh
Confidence 4667899999999999999988632 111 122344455555555544 44555555544432111111111
Q ss_pred ------HHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 039637 70 ------ILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKM 113 (159)
Q Consensus 70 ------~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 113 (159)
..+-.|......+-+..+++++......++....+.++..|.+.
T Consensus 590 ~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 590 AESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred hccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 23344566677788899999999877777888888888888764
No 362
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=83.67 E-value=4.8 Score=21.22 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039637 98 PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (159)
Q Consensus 98 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (159)
|+...++.++..+++-.-+++++..+.+....|. .+..+|..-++.+++..
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554332 34445555555554443
No 363
>PRK09462 fur ferric uptake regulator; Provisional
Probab=83.48 E-value=8.3 Score=23.86 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039637 116 HSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (159)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (159)
.-.|..+++.+...+...+..|.-..+..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444444444444444444444444
No 364
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.41 E-value=9 Score=32.05 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=75.6
Q ss_pred HHhcCCHHHHHHHHHHHHhC-----CCCCCH--HHHHHHHHHHHhcC--ChHHHHHHHHHhH--hcC---CCCChhhHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAK-----YDKYDV--VLLNSMLCAYCRTG--DMESVMHVMRKLD--ELA---ISPDYNTFHI 70 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~-----~~~~~~--~~~~~ll~~~~~~~--~~~~a~~~~~~m~--~~~---~~~~~~~~~~ 70 (159)
--...++.+-+.+++++++. .+.-|. .-|...+..+.+.| -+++++.+.++=. ..+ .+|+...+..
T Consensus 861 q~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~ 940 (1265)
T KOG1920|consen 861 QKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKV 940 (1265)
T ss_pred HHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHH
Confidence 34557788888888877632 122222 13455555555555 4555544433210 000 2456666655
Q ss_pred HHHHHH----ccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039637 71 LIKYFC----KEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (159)
Q Consensus 71 ll~~~~----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (159)
+..+|+ ....+++|--.|+..-+ ..-.+.+|-.+|+|.+|..+-.++...... -..+-..|+.-+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHH
Confidence 554443 33455555444433221 123566677777777777777666542111 1222356778888
Q ss_pred hcCcHHHHhhhh
Q 039637 147 SGKLLKDAYIVV 158 (159)
Q Consensus 147 ~~g~~~~A~~~~ 158 (159)
..++.-+|-+++
T Consensus 1011 e~~kh~eAa~il 1022 (1265)
T KOG1920|consen 1011 EQRKHYEAAKIL 1022 (1265)
T ss_pred HcccchhHHHHH
Confidence 888777776653
No 365
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=82.76 E-value=10 Score=24.22 Aligned_cols=59 Identities=7% Similarity=-0.002 Sum_probs=26.5
Q ss_pred HhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH
Q 039637 57 DELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (159)
Q Consensus 57 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (159)
.+.|++++..=.. ++......+..-.|.++++.+.+.+..++..|--..|..+.+.|-+
T Consensus 18 ~~~GlR~T~qR~~-IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRLE-VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHHH-HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445544433332 3333333333445555666655555444444433444445554433
No 366
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=82.42 E-value=7.5 Score=22.58 Aligned_cols=62 Identities=15% Similarity=0.270 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC--hHHHHHHHHHHHHHcCCC
Q 039637 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK--MYMLAYRTMVDMHRKGHQ 97 (159)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~ 97 (159)
..++..|...++.++|...+.++... .-.......++..+...+ .-+....++..+.+.+.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 45666778889999999999887442 111233344555554442 233455667777776653
No 367
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=82.20 E-value=3.8 Score=30.27 Aligned_cols=126 Identities=13% Similarity=0.009 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhc----CCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHH----cC-CCCcHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDEL----AISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHR----KG-HQPEEE 101 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g-~~~~~~ 101 (159)
.|..|-+.|.-.|+++.|+...+.-... |-+. -...++.+-+++.-.|+++.|.+.|..-.. .| ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5667777778889999998877654431 2211 246788899999999999999998876542 22 233556
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 102 LCSSLIFHLGKMRAHSEALSVYNMLRYS-----KRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
.+-+|...|--...+++|+.++++-..- ...-....+-++-.++...|..+.|+.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6778889998889999999988743321 1122344677888888888888888764
No 368
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.14 E-value=21 Score=27.45 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
.|....-+++..+..+-+++-++.+-.+|..-| -+...|..++.+|... ..+.-..+|+++.+... -|+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 355667788888899888999999999999854 6778888999999888 55666778887777543 2333333444
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 039637 108 FHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~ 127 (159)
..|.+ ++.+.+..+|.++.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHH-hchhhHHHHHHHHH
Confidence 44444 55555555555444
No 369
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.11 E-value=11 Score=24.41 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHH-------HHHhHhcCCCCCh-hhHHHHHHHHHccC
Q 039637 11 FEETKQLAGDFEAKYDKYDVV---LLNSMLCAYCRTGDMESVMHV-------MRKLDELAISPDY-NTFHILIKYFCKEK 79 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~-------~~~m~~~~~~~~~-~~~~~ll~~~~~~~ 79 (159)
++.|.+-++.-...++. |.. -|...+.-+++.....++..+ |++... +.|+. .++..+-.++...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 56666766665544444 443 455555555555554444444 444444 67874 66666777765543
Q ss_pred h-----------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 039637 80 M-----------YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (159)
Q Consensus 80 ~-----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (159)
. +++|.+.|++..+ ..|+..+|+.-+....+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 2 4556666666655 36899999988888643
No 370
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.80 E-value=22 Score=27.57 Aligned_cols=90 Identities=10% Similarity=0.288 Sum_probs=59.6
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHhHhc---CCCCChhhHH-HHHHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYC-RTGDMESVMHVMRKLDEL---AISPDYNTFH-ILIKYFC 76 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~---~~~~~~~~~~-~ll~~~~ 76 (159)
|+.+.+.|.|..|.++-+.+.+..+..|+...-.+|+.|+ ++.+++-.+++++..... ..-||. .|+ ++...|.
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l 427 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFL 427 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHH
Confidence 4566788999999999888888877778888888898887 567788788887766432 233443 444 4444455
Q ss_pred ccCh---HHHHHHHHHHHH
Q 039637 77 KEKM---YMLAYRTMVDMH 92 (159)
Q Consensus 77 ~~~~---~~~a~~~~~~m~ 92 (159)
+... -..|+..+.+..
T Consensus 428 ~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQAL 446 (665)
T ss_pred hcCChhhHHHHHHHHHHHH
Confidence 4443 234444444444
No 371
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=81.64 E-value=8.5 Score=22.67 Aligned_cols=18 Identities=22% Similarity=-0.040 Sum_probs=8.0
Q ss_pred HccCCHHHHHHHHHHHHh
Q 039637 111 GKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 111 ~~~g~~~~a~~~~~~~~~ 128 (159)
.+.|--+++...+.++-.
T Consensus 80 ~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 80 WKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHCT-HHHHHHHHHHHCT
T ss_pred HhhccHHHHHHHHHHHHh
Confidence 344445555555544443
No 372
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=81.38 E-value=16 Score=25.59 Aligned_cols=87 Identities=9% Similarity=0.104 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHc-----CCCCcHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRK-----GHQPEEELC 103 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~~~~~~~~ 103 (159)
....-...+..+...|++.+|+++..+..+. + -+..-|+.+=..- .++.+.......+.+. -...|+..|
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l-~~l~~~~c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y 200 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQL-L-EELKGYSCVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPDKY 200 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-H-HhcccchHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3344455566677788888888887776653 1 1111121111111 1122222222222211 113577788
Q ss_pred HHHHHHHHccCCHHHHH
Q 039637 104 SSLIFHLGKMRAHSEAL 120 (159)
Q Consensus 104 ~~li~~~~~~g~~~~a~ 120 (159)
..+..+|.-.|+...+.
T Consensus 201 ~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 201 SKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 88888887777665544
No 373
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=81.32 E-value=3.3 Score=24.27 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=33.5
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDME 47 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 47 (159)
++.+...+..-.|.++++.+.+.++..+..|--..++.+.+.|-..
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 4455556667778888888888887777777777777777777544
No 374
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.19 E-value=13 Score=24.51 Aligned_cols=85 Identities=11% Similarity=-0.035 Sum_probs=59.1
Q ss_pred HHHHHccChHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHRKGHQ--PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (159)
-..+...+++++|+..+++.+..... ....+--.|.+.....|..|+|...++.....+..+ .....--+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcC
Confidence 34578889999999999988753211 112233456778888999999999999887643331 12234457888999
Q ss_pred cHHHHhhhh
Q 039637 150 LLKDAYIVV 158 (159)
Q Consensus 150 ~~~~A~~~~ 158 (159)
+-++|..-|
T Consensus 174 ~k~~Ar~ay 182 (207)
T COG2976 174 DKQEARAAY 182 (207)
T ss_pred chHHHHHHH
Confidence 988887654
No 375
>PRK09462 fur ferric uptake regulator; Provisional
Probab=81.00 E-value=11 Score=23.39 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=45.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 20 DFEAKYDKYDVVLLNSMLCAYCRT-GDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 20 ~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
.+.+.|.. .+..-..++..+... +..-.|.++++.+.+.+...+..|.-.-|+.+...|-.
T Consensus 7 ~l~~~glr-~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLK-VTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCC-CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 35666776 445566666776664 56889999999999988777887777788888877754
No 376
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=80.82 E-value=13 Score=24.26 Aligned_cols=66 Identities=14% Similarity=0.010 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCCCc--H-----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039637 81 YMLAYRTMVDMHRKGHQPE--E-----ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~--~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (159)
++.|+.+|+.+.+.-..|+ . ..-...+..|.+.|.+++|.+++++.... |+.......+...++.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 4578888888876533321 1 12234567789999999999999998863 33333344444444443
No 377
>PF13934 ELYS: Nuclear pore complex assembly
Probab=80.72 E-value=15 Score=24.75 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=9.5
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 039637 36 MLCAYCRTGDMESVMHVMRK 55 (159)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~ 55 (159)
++.++.+.|+...|+.++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444555555444443
No 378
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=80.49 E-value=6.4 Score=20.48 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=7.1
Q ss_pred hcCChHHHHHHHHHhH
Q 039637 42 RTGDMESVMHVMRKLD 57 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~ 57 (159)
..|++-+|.++++.+-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3444445555544443
No 379
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.48 E-value=18 Score=25.61 Aligned_cols=124 Identities=19% Similarity=0.100 Sum_probs=74.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHhcCChHHHHHHHHHhHhc----CCCCChhhHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLL-------NSMLCAYCRTGDMESVMHVMRKLDEL----AISPDYNTFHIL 71 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l 71 (159)
+...+.+++++|..++.++...|...|..+. .-+-..|.+.|++...-+......+. .-...+-....|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 4567889999999999999999887766544 45666788888877655444332221 111123344455
Q ss_pred HHHHHcc-ChHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 039637 72 IKYFCKE-KMYMLAYRTMVDMHRKGH-----QPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (159)
Q Consensus 72 l~~~~~~-~~~~~a~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (159)
+.-+... ..++..+++.....+-.. ..-...=.-++..+.+.|++.+|....+.+
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 5554433 234444444443332111 111122245788899999999999876644
No 380
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.30 E-value=16 Score=24.88 Aligned_cols=77 Identities=10% Similarity=0.016 Sum_probs=51.6
Q ss_pred HHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHH----cC-CCCcHHHHHHHHHHHHccCCHHHHHHH
Q 039637 48 SVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR----KG-HQPEEELCSSLIFHLGKMRAHSEALSV 122 (159)
Q Consensus 48 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g-~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (159)
.|.+.|+..... ......-..+-.-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+
T Consensus 163 ~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 163 KAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555554431 11223333566778899999999999988862 23 345667778888888899999888876
Q ss_pred HHHH
Q 039637 123 YNML 126 (159)
Q Consensus 123 ~~~~ 126 (159)
-=++
T Consensus 241 ~leL 244 (247)
T PF11817_consen 241 SLEL 244 (247)
T ss_pred HHHH
Confidence 5444
No 381
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=80.22 E-value=14 Score=27.78 Aligned_cols=55 Identities=11% Similarity=0.215 Sum_probs=23.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
.-|...|++.+|.++++++-.--+. -..++.+++-+.-+.++-...+.+++..-.
T Consensus 517 eEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 517 EEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3444445555555554333211111 233444555554455544444444444433
No 382
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.70 E-value=16 Score=24.47 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=64.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHcc
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKE 78 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~ 78 (159)
-+.++|++++|..-|....+.=+..+. ..|..-..++.+.+.++.|+.--.+..+. .|+ ......-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHhh
Confidence 356789999999999988765443333 34555556788899999998888777773 353 12222334578888
Q ss_pred ChHHHHHHHHHHHHHcC
Q 039637 79 KMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g 95 (159)
.++++|+.-|.++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999998863
No 383
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=78.55 E-value=12 Score=22.63 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHH---HHHHHHHcc-------
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFH---ILIKYFCKE------- 78 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~------- 78 (159)
+++.-|.+++..+..+ | .+...++.+....-.-.++++.+++....-.|....-. .-++.|...
T Consensus 3 nNp~IA~~~l~~l~~s---~---~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~ 76 (126)
T PF10155_consen 3 NNPNIAIEILVKLINS---P---NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQN 76 (126)
T ss_pred CcHHHHHHHHHHHcCC---c---hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhccccccc
Confidence 4667788887666543 2 27777888888888888899999888876555543322 233333321
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
+...-.-.++..+.+.+.......+.-+=..|.+..+..+|..+|+.++
T Consensus 77 R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 77 RLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred chhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 2233444566777888776556677777777888889999999998765
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.40 E-value=47 Score=30.49 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=67.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYD-K-YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
+-.+++.+.+|...++.-..... . .....|-.+...|+..++++++.-+...... .| ..+ .-+.-....|++
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~--sl~-~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP--SLY-QQILEHEASGNW 1465 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc--cHH-HHHHHHHhhccH
Confidence 44567778888888777311111 1 1233455556688888888888777664221 12 222 344445566888
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
..|...|+++.+.+ ++...+++-++..-...|.++.+.-..+-..
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 88888888888654 2235556655555555566665555444333
No 385
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.28 E-value=21 Score=25.20 Aligned_cols=59 Identities=17% Similarity=0.000 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 100 EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM---CKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
..++..++..+-+.|.++.|...+..+...+... .+.+...-...+-..|+.++|...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L 207 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKL 207 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHH
Confidence 4566777788888899999999988887643111 2333445556666677777776654
No 386
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.17 E-value=19 Score=24.65 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHH--cCCCCcHHHHHHHHH---HHHccCCHHHHHHHHHHHHhCCCCCC
Q 039637 79 KMYMLAYRTMVDMHR--KGHQPEEELCSSLIF---HLGKMRAHSEALSVYNMLRYSKRSMC 134 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~--~g~~~~~~~~~~li~---~~~~~g~~~~a~~~~~~~~~~~~~~~ 134 (159)
.++++|+..|++.-+ .|-+.+...-.+++. .-+..+++.+|+++|+++..+.+..+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 455566666665543 122333333333332 23456889999999998876554433
No 387
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=78.13 E-value=16 Score=23.59 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=56.3
Q ss_pred HHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 49 VMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 49 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..+++..+.+.|.--|..--...+..-.+.| -.-..+..++.+.|+ +..+....+..+......+.|..++.+...
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 4455555555555444433334444444444 223456677777774 455666677767777777777776664443
Q ss_pred -CCCCCCHHHHHHHHHHHHhcC
Q 039637 129 -SKRSMCKALHEKILHILISGK 149 (159)
Q Consensus 129 -~~~~~~~~~~~~l~~~~~~~g 149 (159)
.+.+++..-...+...+...|
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rG 151 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRG 151 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcC
Confidence 335666666666667666666
No 388
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=77.92 E-value=9.2 Score=20.86 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=5.8
Q ss_pred HHhcCCHHHHHHH
Q 039637 5 FCRSGCFEETKQL 17 (159)
Q Consensus 5 ~~~~~~~~~A~~~ 17 (159)
.++.|+++-...+
T Consensus 4 A~~~~~~~~~~~l 16 (89)
T PF12796_consen 4 AAQNGNLEILKFL 16 (89)
T ss_dssp HHHTTTHHHHHHH
T ss_pred HHHcCCHHHHHHH
Confidence 3445554444333
No 389
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.92 E-value=16 Score=23.75 Aligned_cols=127 Identities=9% Similarity=-0.018 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhH-HHHHHHHHccChHHHHHHHHHHHHHcCCCCcHH-HHHHH--H
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF-HILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEE-LCSSL--I 107 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~l--i 107 (159)
.|..-+. +.+.++.++|+.-|..+.+.|..--+..- -.+-......|+...|...|.++-.....|-+. -...| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3443333 35677889999999999887653221111 122233567799999999999998754444322 11122 2
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 108 FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
-.+...|.++....-.+-+...+-+.-...-.+|--+--+.|++..|...|+
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 2345678888888888877655545445556677778889999999988763
No 390
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=77.77 E-value=21 Score=28.43 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=50.4
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHH--HHHHHHHhH-hcCCCCChhhHHHHHHHH
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAK--YDKYDVVLLNSMLCAYCRTGDMES--VMHVMRKLD-ELAISPDYNTFHILIKYF 75 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~~m~-~~~~~~~~~~~~~ll~~~ 75 (159)
|..+|..+|++.++.++++.+... |-+.=..-+|..|+...+.|.++- +.+-..+.. +..+.-|.-||..|+.+.
T Consensus 34 l~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~s 113 (1117)
T COG5108 34 LFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQAS 113 (1117)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Confidence 467899999999999999988744 333345678889999999986542 222222222 233556677777766654
No 391
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=77.20 E-value=21 Score=24.56 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=17.0
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 039637 98 PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC 134 (159)
Q Consensus 98 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 134 (159)
|++.....++..| ..+++++|.+++..+-..|+.|.
T Consensus 237 PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 237 PHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 4444444444332 23445555555555555555444
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.73 E-value=26 Score=25.45 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=55.7
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHhHhcCC-----CCChhhHHHHHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYC-RTGDMESVMHVMRKLDELAI-----SPDYNTFHILIKYF 75 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~ 75 (159)
|..+.+.|.+..|.++.+-+...++.-|+..--.+|+.|+ +.++++-.+++.+....... ......|+..+.-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 5678899999999999999998888778888888888887 67788888888887655200 11235666555544
Q ss_pred Hc
Q 039637 76 CK 77 (159)
Q Consensus 76 ~~ 77 (159)
..
T Consensus 190 ~l 191 (360)
T PF04910_consen 190 RL 191 (360)
T ss_pred Hh
Confidence 43
No 393
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=76.40 E-value=30 Score=27.64 Aligned_cols=75 Identities=9% Similarity=0.032 Sum_probs=40.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhc--CCCCChhhHHHHHHHHHccChHH------HHHHHHHHHHHcCCCCcHHHHHHH
Q 039637 35 SMLCAYCRTGDMESVMHVMRKLDEL--AISPDYNTFHILIKYFCKEKMYM------LAYRTMVDMHRKGHQPEEELCSSL 106 (159)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~m~~~g~~~~~~~~~~l 106 (159)
+|..+|...|++..+.++++..... |-+.-...||.-++...+.|.++ .+.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6677777777777777777666543 22223455666666666666543 2222232222 33455566655
Q ss_pred HHHHHc
Q 039637 107 IFHLGK 112 (159)
Q Consensus 107 i~~~~~ 112 (159)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 544333
No 394
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=75.84 E-value=39 Score=26.97 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=27.3
Q ss_pred HHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039637 4 AFCRSGC--FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRK 55 (159)
Q Consensus 4 ~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 55 (159)
+|.+.++ +-+-.--+++++++|-.|+.... ...++-.|++.+|-++|.+
T Consensus 607 AY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 607 AYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 4444443 33444445677777877776543 3344455666666666654
No 395
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.79 E-value=13 Score=21.65 Aligned_cols=86 Identities=15% Similarity=-0.035 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 039637 45 DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (159)
..++|..+-+.+...+-. ....--+-+......|++++|..+.+.+ +.||...|-+|. -.+.|..++...-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHH
Confidence 356666666666553211 1222223345678889999998876655 578888776655 457788888888888
Q ss_pred HHHhCCCCCCHHHH
Q 039637 125 MLRYSKRSMCKALH 138 (159)
Q Consensus 125 ~~~~~~~~~~~~~~ 138 (159)
.|..+|. |....|
T Consensus 93 rla~sg~-p~lq~F 105 (115)
T TIGR02508 93 RLAASGD-PRLQTF 105 (115)
T ss_pred HHHhCCC-HHHHHH
Confidence 8876553 344343
No 396
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=75.25 E-value=6.5 Score=23.24 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 104 SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
..++......+..-.|..+++.+...+...+..|.-.-++.+.+.|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 345555555555666667777777666666666666666666666643
No 397
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.05 E-value=27 Score=24.82 Aligned_cols=119 Identities=11% Similarity=-0.061 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc---cChHHHHHHH
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK---EKMYMLAYRT 87 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~ 87 (159)
.+.-+.++++..+.++ -+...+-.+|..+.+..+.++..+-|+++.... .-+...|...|+.... .-.++...++
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3556777888777766 488899999999999999999999999999853 1245667666666543 2234455555
Q ss_pred HHHHHH------cCC----CCc-------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 039637 88 MVDMHR------KGH----QPE-------EELCSSLIFHLGKMRAHSEALSVYNMLRYSKR 131 (159)
Q Consensus 88 ~~~m~~------~g~----~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 131 (159)
|.+.++ .+. .+. ..++..+.......|..+.|..+++.+.+.+.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 544432 111 111 23334445556678999999999998876553
No 398
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=74.84 E-value=11 Score=20.24 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=22.7
Q ss_pred hcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC
Q 039637 42 RTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 79 (159)
..++.+.+.+++++..+.|..|.......+.-+..+.|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35666777777777776666665555555555554444
No 399
>PRK10941 hypothetical protein; Provisional
Probab=74.34 E-value=26 Score=24.32 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHH
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRK-GHQPEEELCSSLIFHL 110 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~ 110 (159)
.+.+-.+|.+.++++.|+.+.+.+.. +.|+ ..-+.----.|.+.|.+..|..-++..++. .-.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 45556677888888888888888887 4454 344544555577888888888877777654 2334555555555544
Q ss_pred Hc
Q 039637 111 GK 112 (159)
Q Consensus 111 ~~ 112 (159)
.+
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
No 400
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=73.72 E-value=16 Score=21.44 Aligned_cols=28 Identities=7% Similarity=0.180 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHccChHHHHHHHHHHHHH
Q 039637 66 NTFHILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
.-|..|+..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4688899999999999999999988876
No 401
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=73.71 E-value=16 Score=27.41 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=63.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHccChHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYM 82 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~ 82 (159)
.+...+.++.|..++.+..+..+. +...|..-..++.+.+++..|+.=+.+..+. .|+. -.|-.=-.+|.+.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHHHH
Confidence 345667888888888888775433 3444555557778888888877766666663 2432 22323334455556666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKM 113 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 113 (159)
+|...|+.... +.|+-.-....+.-|.+.
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 77666666554 456665555555555444
No 402
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.53 E-value=42 Score=26.30 Aligned_cols=83 Identities=11% Similarity=0.049 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHhHhcC---CCCChhhHHHHHHHHH--ccChHHHHHHHHHHHHHcC---------CCCcHHHHHHHHHH
Q 039637 44 GDMESVMHVMRKLDELA---ISPDYNTFHILIKYFC--KEKMYMLAYRTMVDMHRKG---------HQPEEELCSSLIFH 109 (159)
Q Consensus 44 ~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g---------~~~~~~~~~~li~~ 109 (159)
+++..|.+.++.....- -.|...++..++.+.. +.+.++++.+.++++.... ..|...+|..++..
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 67777777776665432 2233344444444433 2344455555555553211 12344555555544
Q ss_pred HH--ccCCHHHHHHHHHHH
Q 039637 110 LG--KMRAHSEALSVYNML 126 (159)
Q Consensus 110 ~~--~~g~~~~a~~~~~~~ 126 (159)
++ ..|+++.+...++.+
T Consensus 233 ~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 44 345555555544433
No 403
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=73.48 E-value=11 Score=19.59 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-----ccCCHHHHHHHH
Q 039637 75 FCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLG-----KMRAHSEALSVY 123 (159)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-----~~g~~~~a~~~~ 123 (159)
+...|++-+|-++++.+-.....+....+..+|.... +.|+...|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 4456888888888888875433345566666665543 457777776654
No 404
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=73.17 E-value=32 Score=24.85 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhc---CCCCChhhHH--HHHHHHHccChHHHHHHHHHHHHH-----cCCCCcHH-H
Q 039637 34 NSMLCAYCRTGDMESVMHVMRKLDEL---AISPDYNTFH--ILIKYFCKEKMYMLAYRTMVDMHR-----KGHQPEEE-L 102 (159)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~-~ 102 (159)
..++...-+.+|.++|++.++++.+. --.|+...|. .+..++...||..++.+.+..... .|++|+++ .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34444555667899999999998865 2245555554 455566778999999999888876 57777543 4
Q ss_pred HHHHHHHHHc-cCCHHHHHH
Q 039637 103 CSSLIFHLGK-MRAHSEALS 121 (159)
Q Consensus 103 ~~~li~~~~~-~g~~~~a~~ 121 (159)
|..+-+-|.+ .|++....+
T Consensus 159 fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 5555555544 366554443
No 405
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.75 E-value=29 Score=27.22 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=41.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcC-CCCChhhHHHHHHHHHcc---
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPDYNTFHILIKYFCKE--- 78 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~--- 78 (159)
..+.-.|+++.|.+++-. ..+...+.+++.+.+.-|.-.+-..... ..+.... -.|...-+..||..|++.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 456678999999998755 2233446666666666554333222221 2222211 012225577888888764
Q ss_pred ChHHHHHHHHHHHHHcC
Q 039637 79 KMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g 95 (159)
.++.+|.+++--+....
T Consensus 341 td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 341 TDPREALQYLYLICLFK 357 (613)
T ss_dssp T-HHHHHHHHHGGGGS-
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 67888888887766543
No 406
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.33 E-value=62 Score=27.73 Aligned_cols=147 Identities=15% Similarity=0.078 Sum_probs=89.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-----------------------CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAK-----------------------YDKYD-----VVLLNSMLCAYCRTGDMESVMHVMRK 55 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~ 55 (159)
+|...|...+|+..|...... |-.|+ ..-|...++.+-+.+-.+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 377888889998888765422 22222 23367788888888888888887766
Q ss_pred hHhcCCCCC----hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHH----HHHHHHHHHHccCCHH----------
Q 039637 56 LDELAISPD----YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEE----LCSSLIFHLGKMRAHS---------- 117 (159)
Q Consensus 56 m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~---------- 117 (159)
..+. +.++ ..+++++.+-....|++.+|...+ .+ .||.. ....++..+..+|.++
T Consensus 1009 AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~---npdserrrdcLRqlvivLfecg~l~~L~~fpfigl 1081 (1480)
T KOG4521|consen 1009 AIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR---NPDSERRRDCLRQLVIVLFECGELEALATFPFIGL 1081 (1480)
T ss_pred HHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc---CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccch
Confidence 6653 2232 245667777777888887665443 22 23322 3455666666666654
Q ss_pred --HHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 118 --EALS-VYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 118 --~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
+... +++..-.....-...-|..|-..+...+++.+|-.+
T Consensus 1082 ~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1082 EQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 3444 333222222222234577888888899998887543
No 407
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.30 E-value=11 Score=18.95 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=8.5
Q ss_pred HHHhcCChHHHHHHHHHhHh
Q 039637 39 AYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~ 58 (159)
++.+.|++.+|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 33444444444444444444
No 408
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.28 E-value=33 Score=24.15 Aligned_cols=86 Identities=9% Similarity=0.073 Sum_probs=51.4
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHcCC----C-------CcHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHH
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHRKGH----Q-------PEEELCSSLIFHLGKMRAHSEALSVYNMLRY-SKRSMCKA 136 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~----~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ 136 (159)
+-|-+.|...+++.+..+++.++.+.-. + --..+|..=|..|-.+.+-.+-..++++... ....|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3455566667777777788877764311 0 1145676777888888888877788875543 23334443
Q ss_pred HHHHHHHHH-----HhcCcHHHHh
Q 039637 137 LHEKILHIL-----ISGKLLKDAY 155 (159)
Q Consensus 137 ~~~~l~~~~-----~~~g~~~~A~ 155 (159)
+ .-+|+-| .+.|++++|.
T Consensus 229 I-mGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 229 I-MGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred H-HhHHHHcCCccccccchHHHHH
Confidence 3 3344433 4566777664
No 409
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=70.73 E-value=8.5 Score=17.13 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 039637 10 CFEETKQLAGDFEAKYDKYDVVLLNS 35 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~~~~~~ 35 (159)
.++.|..+|++...- .|++.+|-.
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 467778888877764 456555543
No 410
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=70.11 E-value=37 Score=24.28 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (159)
.++++.+.+.++.|.-..|.-+.-.+.+.=.+.+..++|+.+.+.. .-|..++..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHH
Confidence 5788888889999998888888878888888999999999998743 336777777665
No 411
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=69.53 E-value=21 Score=21.16 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=43.1
Q ss_pred HHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 039637 47 ESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (159)
Q Consensus 47 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (159)
+.+..++..+.+.|.--|..-....+....+.+.+ ....+-..+.+.|+.++ .....+. .....+.|..+.++-
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~-G~~~I~~~L~~kGi~~~--~i~~~l~---~~~~~e~a~~~~~kk 82 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGK-GPRRIRQKLKQKGIDRE--IIEEALE---EYDEEEEALELAEKK 82 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT--HH--HHHHHHT---CS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccc-cHHHHHHHHHHHCCChH--HHHHHHH---HhhHHHHHHHHHHHH
Confidence 33555666666666644444334455544442222 12445556666665332 2222222 233334455555433
Q ss_pred Hh-CCCCCCHHHHHHHHHHHHhcC
Q 039637 127 RY-SKRSMCKALHEKILHILISGK 149 (159)
Q Consensus 127 ~~-~~~~~~~~~~~~l~~~~~~~g 149 (159)
.. ...+++......++..+.+.|
T Consensus 83 ~~~~~~~~~~~~~~K~~~~L~rrG 106 (121)
T PF02631_consen 83 YRRYRKPSDRKRKQKLIRFLMRRG 106 (121)
T ss_dssp HHHTTTS-CHHHHHHHHHHHHHTT
T ss_pred HhcccCCCCHHHHHHHHHHHHHCC
Confidence 32 223455556666666666666
No 412
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=69.33 E-value=30 Score=22.87 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=33.1
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHh
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDV-VLLNSMLCAYCRTGDMESVMHVMRKL 56 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m 56 (159)
+++.+...|+|+.|.+.|.-+.... ..|. ..|+.=+..+.+.+......+.++.|
T Consensus 47 lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 47 LLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 3567777888888888888877543 2343 34565556666555544444444443
No 413
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.93 E-value=56 Score=25.83 Aligned_cols=80 Identities=6% Similarity=-0.015 Sum_probs=45.5
Q ss_pred ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039637 64 DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143 (159)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (159)
+..-|..|-++....+++..|.+.|..... |..|+-.+...|+-+.-..+-....+.|. .|...-
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~ 729 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFL 729 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHH
Confidence 455677777777777777777777665443 33455555555655544444444443321 133444
Q ss_pred HHHhcCcHHHHhhhh
Q 039637 144 ILISGKLLKDAYIVV 158 (159)
Q Consensus 144 ~~~~~g~~~~A~~~~ 158 (159)
+|...|+++++.+++
T Consensus 730 ~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 730 AYFLSGDYEECLELL 744 (794)
T ss_pred HHHHcCCHHHHHHHH
Confidence 566667777666654
No 414
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.91 E-value=21 Score=21.05 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHH
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (159)
...++|..+.+.+...+-. ...+--+-+..+...|+|++|+.. - .....||...|.+| +-.+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~--~--~~~~~pdL~p~~AL--~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLL--P--QCHCYPDLEPWAAL--CAWKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHH--H--TTS--GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHh--c--ccCCCccHHHHHHH--HHHhhccHHHHHHHH
Confidence 4578999999999887653 555556667778899999999222 1 22245777777655 445778889999999
Q ss_pred HHHHHcCCCCcHHHH
Q 039637 89 VDMHRKGHQPEEELC 103 (159)
Q Consensus 89 ~~m~~~g~~~~~~~~ 103 (159)
.++..+| .|....|
T Consensus 93 ~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 93 TRLASSG-SPELQAF 106 (116)
T ss_dssp HHHCT-S-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 9888776 3554444
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.56 E-value=57 Score=25.78 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=53.8
Q ss_pred cCChHHHHHHHHHhHhcCCCCC--hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHH
Q 039637 43 TGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120 (159)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 120 (159)
.|+...|...+..... ..|- ......|.+...+.|....|-.++.+-+... ...+.++-.+.++|....++++|+
T Consensus 620 ~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4566666666655443 2232 2333345555566666677777777766554 345567778888888899999999
Q ss_pred HHHHHHHh
Q 039637 121 SVYNMLRY 128 (159)
Q Consensus 121 ~~~~~~~~ 128 (159)
+-|++..+
T Consensus 697 ~~~~~a~~ 704 (886)
T KOG4507|consen 697 EAFRQALK 704 (886)
T ss_pred HHHHHHHh
Confidence 99887665
No 416
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=68.37 E-value=17 Score=28.13 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHH
Q 039637 26 DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 26 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
+-.+...-..++..|.+.|-.+.+.++.+.+-..-+ ...-|..-+..+.+.|+...+..+-+.+.+
T Consensus 401 p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 401 PLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp ---SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334555566677777777777777777666554322 234455566666666666665555555543
No 417
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=68.01 E-value=39 Score=28.23 Aligned_cols=71 Identities=14% Similarity=0.023 Sum_probs=54.0
Q ss_pred HccChHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039637 76 CKEKMYMLAYRTMVDMHRKGHQPEE-ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (159)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (159)
.....+.+++++|..|...|+.+.. ..|......+.+.+.+.+|..+|+.-.+....|....-..+-....
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~ 160 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQ 160 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 3567788999999999999877654 4667778888889999999999998887777777655444444333
No 418
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=67.82 E-value=7.9 Score=23.36 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=21.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 039637 7 RSGCFEETKQLAGDFEAKYDKYDVVLLN 34 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 34 (159)
-.|+..+|.++++.+..+|..|....|.
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 4689999999999999999988877764
No 419
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=67.52 E-value=24 Score=21.03 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=23.3
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 70 ILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
.+++...++.--++|+++++.|.+.| ..+...-+.|-.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35555666666777777777777776 345444444433
No 420
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=67.24 E-value=43 Score=23.85 Aligned_cols=138 Identities=9% Similarity=-0.088 Sum_probs=87.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc---C---------ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHH
Q 039637 18 AGDFEAKYDKYDVVLLNSMLCAYCRT---G---------DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAY 85 (159)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~ll~~~~~~---~---------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 85 (159)
|++-.+..|. |+.+|-.++..=-+. + -.+.-+.++++.++.+ .-+.......|..+.+.-+.++..
T Consensus 8 l~~~v~~~P~-di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVRENPH-DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3444555555 888888888642221 1 1344577888877763 244666778888898888888889
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHcc---CCHHHHHHHHHHHHh----C--CC------CCC-----HHHHHHHHHHH
Q 039637 86 RTMVDMHRKGHQPEEELCSSLIFHLGKM---RAHSEALSVYNMLRY----S--KR------SMC-----KALHEKILHIL 145 (159)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~----~--~~------~~~-----~~~~~~l~~~~ 145 (159)
+-++++.... +-+...|...|...... -.++....+|.+... . +. .+. ..++..+...+
T Consensus 86 ~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999863 33677888887766552 235555555543221 1 11 111 12355566677
Q ss_pred HhcCcHHHHhhhh
Q 039637 146 ISGKLLKDAYIVV 158 (159)
Q Consensus 146 ~~~g~~~~A~~~~ 158 (159)
..+|..+.|..++
T Consensus 165 ~~aG~~E~Ava~~ 177 (321)
T PF08424_consen 165 RQAGYTERAVALW 177 (321)
T ss_pred HHCCchHHHHHHH
Confidence 7899999998765
No 421
>PRK14700 recombination factor protein RarA; Provisional
Probab=66.97 E-value=43 Score=23.75 Aligned_cols=63 Identities=14% Similarity=-0.016 Sum_probs=39.1
Q ss_pred HHHHHHHc---cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC-----HHHHHHHHHHHHhCCCC
Q 039637 70 ILIKYFCK---EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA-----HSEALSVYNMLRYSKRS 132 (159)
Q Consensus 70 ~ll~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~ 132 (159)
-+++++.+ ..|++.|+-++.+|++.|..|....-..++-++...|. ...|...++....-|+|
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 35666544 46888888999999988876665555666666666663 23344444444444443
No 422
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.74 E-value=42 Score=23.26 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLD 57 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~ 57 (159)
..|..-..+|--..++++|-..+.+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 356666677777888888888776665
No 423
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=65.42 E-value=43 Score=23.29 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=34.8
Q ss_pred HHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHH
Q 039637 38 CAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
.++.+.++++.|...-++...-+ .-|..-+.----+|.+.|....|++-++...+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~-P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLN-PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhC-CCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 45667777777777777776631 12344455555567777777777777766554
No 424
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.35 E-value=22 Score=19.95 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=11.0
Q ss_pred HHHhcCChHHHHHHHHHhHh
Q 039637 39 AYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~ 58 (159)
.....|++++|...+++.++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34455666666666655543
No 425
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=65.22 E-value=27 Score=20.82 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=24.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHH
Q 039637 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHIL 71 (159)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 71 (159)
+++.+.++.-.++|+++.+.|.+.|- .+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GE-It~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGE-ITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 36667778888889999999988874 443333333
No 426
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=65.19 E-value=27 Score=24.53 Aligned_cols=74 Identities=11% Similarity=0.010 Sum_probs=44.1
Q ss_pred HHHHHHhHhcCCCCCh-hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 039637 50 MHVMRKLDELAISPDY-NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (159)
Q Consensus 50 ~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (159)
...|-.....|-.|+. .+|..+...-+. .-.++|...|......-+.+...+...|......+ ..+|..+|..-
T Consensus 14 ~~~Yv~aIn~G~vP~iesa~~~~~e~e~~-~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~--~~~A~~~F~~~ 88 (297)
T PF02841_consen 14 VKSYVDAINSGSVPCIESAWQAVAEAENR-AAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQC--EKEALEVFMKR 88 (297)
T ss_dssp HHHHHHHHHTTS--BHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH--HHHHHHHHHHH
Confidence 3444455667888986 567777666443 34678888886644333233334566777666555 77888999863
No 427
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.06 E-value=75 Score=25.86 Aligned_cols=73 Identities=8% Similarity=0.028 Sum_probs=49.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKY---DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 79 (159)
+=+.+.+.+++|+...+.-.. ..| ....+...|+.+.-.|++++|-.+.-.|.. -+..-|..-+.-+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccc
Confidence 345677888999888655432 233 346788999999999999999888777765 34455555555555444
Q ss_pred hH
Q 039637 80 MY 81 (159)
Q Consensus 80 ~~ 81 (159)
+.
T Consensus 438 ~l 439 (846)
T KOG2066|consen 438 QL 439 (846)
T ss_pred cc
Confidence 43
No 428
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.68 E-value=63 Score=24.85 Aligned_cols=125 Identities=13% Similarity=0.113 Sum_probs=73.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHH-HHH-------HH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLL--NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFH-ILI-------KY 74 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll-------~~ 74 (159)
++..|.++.|...|....+.--..|...+ ..+...|.+.|+.+.-.++++...- |+..+++ ..+ .+
T Consensus 377 s~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~g 452 (629)
T KOG2300|consen 377 SHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYG 452 (629)
T ss_pred hhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHH
Confidence 45568899999998877654333344333 3455678888887777777665432 3344443 111 11
Q ss_pred --HHccChHHHHHHHHHHHHHcCCCCcHHHHHH--------HHHHHHccCCHHHHHHHHH-HHHhCCCCCCHH
Q 039637 75 --FCKEKMYMLAYRTMVDMHRKGHQPEEELCSS--------LIFHLGKMRAHSEALSVYN-MLRYSKRSMCKA 136 (159)
Q Consensus 75 --~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~--------li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~ 136 (159)
...++++.+|...+.+-++.. +..-++. |-..+...|+..++..... .|.-....||..
T Consensus 453 lfaf~qn~lnEaK~~l~e~Lkma---naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 453 LFAFKQNDLNEAKRFLRETLKMA---NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHhccHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 245789999999998877642 2222222 2233445688888887766 444334445543
No 429
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=64.61 E-value=3.8 Score=20.81 Aligned_cols=33 Identities=12% Similarity=0.358 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHhHhcCCCCChhhHHHHHHHHH
Q 039637 44 GDMESVMHVMRKLDELAISPDYNTFHILIKYFC 76 (159)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 76 (159)
|-.++.+.+|++|......|.+..|+-.+.-|.
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 556778888898888888888888876666554
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.15 E-value=55 Score=24.02 Aligned_cols=121 Identities=11% Similarity=-0.046 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHhHhcCCCCChh--hHHHHHHHHHc--cChHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHH
Q 039637 37 LCAYCRTGDMESVMHVMRKLDELAISPDYN--TFHILIKYFCK--EKMYMLAYRTMVDMHRKGHQ--PEEELCSSLIFHL 110 (159)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~ 110 (159)
...+...+++..|.++|..+... +.++.. .+..+..+|.. .-++.+|.+.++........ -....+..++...
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 111 GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 111 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
-....+......-..-......+-....-.-..--...|+++.|.-.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarl 264 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARL 264 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
No 431
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=63.95 E-value=14 Score=21.16 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=37.1
Q ss_pred HhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHH
Q 039637 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEE 101 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 101 (159)
.+..+...+.++|..+.+.|. .+...+..+..-....++.+-- .++..=.+..+.|++.
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~~ 93 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGR-CDETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDLV 93 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCC-CccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCchh
Confidence 455677888899998888886 3333444566666666666554 5554444555666653
No 432
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.61 E-value=37 Score=24.79 Aligned_cols=136 Identities=10% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh--hHHHHHHHHHccChHHHHHHHHHH
Q 039637 15 KQLAGDFEAKYDKYDVVL--LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN--TFHILIKYFCKEKMYMLAYRTMVD 90 (159)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~ 90 (159)
.++++.+.+.|..|+... ..+.+...++.|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCcHHHHhhhhC
Q 039637 91 MHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHE--KILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 91 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~ 159 (159)
-.......+....+.|..+..... .++++.+.+.|..|+..... ..+..-+..|+.+-...+++
T Consensus 91 ~~~~~~~~~~~g~tpL~~A~~~~~-----~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 91 GKFADDVFYKDGMTPLHLATILKK-----LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred CCcccccccCCCCCHHHHHHHhCC-----HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
No 433
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.55 E-value=73 Score=25.23 Aligned_cols=101 Identities=13% Similarity=-0.090 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHH
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 87 (159)
.|+...|...+.......+...-+..-.|.+...+.|-..+|..++.+-.... ...+-++-.+-+++....+.++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 47778888877665543333333344445555666667777888887766644 23345566688889999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHH
Q 039637 88 MVDMHRKGHQPEEELCSSLIFHL 110 (159)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~ 110 (159)
|.+..+.. +-++..-+.|...-
T Consensus 699 ~~~a~~~~-~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSLKLIR 720 (886)
T ss_pred HHHHHhcC-CCChhhHHHHHHHH
Confidence 99888653 22444445554433
No 434
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=63.08 E-value=47 Score=22.90 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=82.8
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCChHH---HHHHHHHhHhc----CCCCChhh
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR-------TGDMES---VMHVMRKLDEL----AISPDYNT 67 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~~---a~~~~~~m~~~----~~~~~~~~ 67 (159)
+-++-+.++.++|+..+++.....+......|--.|.+++. ..|... |..-|++.++. ...||...
T Consensus 78 ~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~ 157 (254)
T COG4105 78 AYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKA 157 (254)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45678899999999999999877665444455555554443 123333 34444444432 22333221
Q ss_pred H------------HHHHHHHHccChHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 68 F------------HILIKYFCKEKMYMLAYRTMVDMHRKGHQPE---EELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 68 ~------------~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
- -.+.+.|.+.|.+-.|..-++.|.+. .+-+ ....-.+..+|...|-.++|.+.-.-+..
T Consensus 158 ~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 158 RIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 1 24556688899999999999999986 3323 33556678899999999999988776664
No 435
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.71 E-value=36 Score=26.09 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=63.2
Q ss_pred HhcCCHHHHHHHHHHHH---hCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHhHh-------cCCCCCh-----
Q 039637 6 CRSGCFEETKQLAGDFE---AKYDKYD-----VVLLNSMLCAYCRTGDMESVMHVMRKLDE-------LAISPDY----- 65 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~---~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-------~~~~~~~----- 65 (159)
.-.|++.+|.+++...- ..|...+ -..||.|-..+.+.|.+..+.-+|.+..+ .|++|..
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 34577888877764432 1222212 12357777777778877777777766653 3655531
Q ss_pred ------hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 039637 66 ------NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (159)
Q Consensus 66 ------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (159)
.+|| .--.|...|++-.|.+.|...... ...++..|-.+..+|.-
T Consensus 331 ~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 331 QNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred cccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2233 223356678888888888777654 34577788777777753
No 436
>COG0819 TenA Putative transcription activator [Transcription]
Probab=61.78 E-value=46 Score=22.36 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHH
Q 039637 25 YDKYDVVLLNSMLCAYCRTGDMES 48 (159)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~~~~~~ 48 (159)
.+.|....|+..|...+..|++.+
T Consensus 104 ~~~~~~~aYt~ym~~~~~~g~~~~ 127 (218)
T COG0819 104 EPSPANKAYTRYLLDTAYSGSFAE 127 (218)
T ss_pred CCCchHHHHHHHHHHHHhcCCHHH
Confidence 344555566666666666665444
No 437
>PRK09857 putative transposase; Provisional
Probab=61.64 E-value=54 Score=23.10 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=44.1
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 039637 68 FHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK 135 (159)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 135 (159)
+..++....+.++.++..++++.+.+. .+..-....++..-+.+.|.-+++..+-.+|...|..++.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 455665556667766667777766654 2333344556667777777777888888888887877553
No 438
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=61.45 E-value=28 Score=25.30 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHH
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS 117 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 117 (159)
.+++.+..++|+-.|..+-..+|..|.+.|.+|
T Consensus 316 ~~L~~eFekRGvffD~~SkqeiI~fyEkin~lE 348 (363)
T TIGR03236 316 NRLIEEFSKRGVAFDRQSQQMLIEFYERHGNLE 348 (363)
T ss_pred HHHHHHHHhcCceeCchhHHHHHHHHHHhCccc
Confidence 444455555555555555555555555544433
No 439
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=59.77 E-value=55 Score=22.61 Aligned_cols=144 Identities=12% Similarity=0.071 Sum_probs=76.5
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHhHhcCCCCChhhHHHHHHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM-----ESVMHVMRKLDELAISPDYNTFHILIKYFC 76 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 76 (159)
+..+.+.|....|.++.+.+... +.=..+...++......... .....++....+- +... ..|-.++..|.
T Consensus 89 L~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l-l~~f-~~~l~Ivv~C~ 164 (258)
T PF07064_consen 89 LRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL-LQEF-PEYLEIVVNCA 164 (258)
T ss_pred HHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH-HHcC-cchHHHHHHHH
Confidence 45566777777888877777542 21234444444433322211 1111222222211 0111 22433444444
Q ss_pred ccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCc
Q 039637 77 KEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-RSM-----CKALHEKILHILISGKL 150 (159)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~g~ 150 (159)
|.=+. +.|..+...--.|. .+..-|.+.|+++.|..++--+...+ ... +...-..++......++
T Consensus 165 RKtE~----~~W~~LF~~lg~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~ 235 (258)
T PF07064_consen 165 RKTEV----RYWPYLFDYLGSPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGD 235 (258)
T ss_pred HhhHH----HHHHHHHHhcCCHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence 43332 33333333211232 67778888999999998877666433 222 34455677888889999
Q ss_pred HHHHhhhh
Q 039637 151 LKDAYIVV 158 (159)
Q Consensus 151 ~~~A~~~~ 158 (159)
|+-+.++.
T Consensus 236 w~Lc~eL~ 243 (258)
T PF07064_consen 236 WDLCFELV 243 (258)
T ss_pred HHHHHHHH
Confidence 99998875
No 440
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=59.75 E-value=53 Score=22.41 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHccChHHHHHHHHHHHHHc
Q 039637 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (159)
..||-+--.+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 34444444444445555555555555443
No 441
>PRK09857 putative transposase; Provisional
Probab=59.65 E-value=59 Score=22.90 Aligned_cols=48 Identities=8% Similarity=-0.139 Sum_probs=22.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHH
Q 039637 104 SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLK 152 (159)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (159)
..++.-..+.++.++...+++.+... .+........+.+-+...|.-+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe 257 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQS 257 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555443 2223334445555555555433
No 442
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.62 E-value=83 Score=24.59 Aligned_cols=123 Identities=9% Similarity=-0.047 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
+..+|+.-++--.+.|+.+.+.-+|+..... +.--...|-..+.-....|+.+-+..++..-.+--+ |+......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHHH
Confidence 4568999999999999999999999887652 222234455555555555888888777666555433 33333333333
Q ss_pred H-HHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCcHHHHh
Q 039637 109 H-LGKMRAHSEALSVYNMLRYSKRSMC-KALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 109 ~-~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 155 (159)
. ....|+.+.|..+++.+...- |+ ...-..-+....+.|..+.+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 3 344589999999999988643 44 333334455666666666554
No 443
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=59.56 E-value=35 Score=20.25 Aligned_cols=33 Identities=3% Similarity=-0.048 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcC
Q 039637 12 EETKQLAGDFEA-KYDKY-DVVLLNSMLCAYCRTG 44 (159)
Q Consensus 12 ~~A~~~~~~~~~-~~~~~-~~~~~~~ll~~~~~~~ 44 (159)
++|.+.+.++.. .|+.| |+.+--++...+....
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~ 40 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPS 40 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCC
Confidence 455566666553 35666 5544444444444333
No 444
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.45 E-value=56 Score=22.58 Aligned_cols=117 Identities=11% Similarity=0.044 Sum_probs=70.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHH-HHHccChHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDV-VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIK-YFCKEKMYM 82 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~ 82 (159)
|...++++.|...|.+... +.|++ .-|+.-+..+.+..+++.+..=-...++ +.||..-=..++. +......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3445667778887765554 34555 4456666677778888777665555555 5677655444443 345556778
Q ss_pred HHHHHHHHHHH----cCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 039637 83 LAYRTMVDMHR----KGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125 (159)
Q Consensus 83 ~a~~~~~~m~~----~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (159)
+|+..+.+... ....+...+...|..+--+.=...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 88888777642 23444555666676665555555555555443
No 445
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.22 E-value=71 Score=23.67 Aligned_cols=102 Identities=17% Similarity=0.028 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhC---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC------------------ChhhH
Q 039637 11 FEETKQLAGDFEAK---YD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP------------------DYNTF 68 (159)
Q Consensus 11 ~~~A~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~------------------~~~~~ 68 (159)
.++..+++...... +. ..+......++... .|+...++.+++.....+-.. +...+
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~ 230 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEH 230 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHH
Confidence 35555666554322 33 44555555554432 677777777776653221111 11223
Q ss_pred HHHHHHHHc---cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC
Q 039637 69 HILIKYFCK---EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR 114 (159)
Q Consensus 69 ~~ll~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 114 (159)
..+++++.+ .++++.++.++..|.+.|..|....-..++.++...|
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 344555544 4788999999999999887776544444454444444
No 446
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=59.22 E-value=59 Score=22.76 Aligned_cols=106 Identities=10% Similarity=-0.064 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHhHhcCC----CCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 039637 34 NSMLCAYCRTGD---MESVMHVMRKLDELAI----SPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSL 106 (159)
Q Consensus 34 ~~ll~~~~~~~~---~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (159)
..++...| |+ .+.|.+.|+.....+. ..+...-..++....+.|+.+.-..+++.... .++......+
T Consensus 133 ~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~ 207 (324)
T PF11838_consen 133 ALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRL 207 (324)
T ss_dssp HHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHH
T ss_pred HHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHH
Confidence 34355555 43 4568888888877422 34556666677777777776554444444443 3467788899
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 039637 107 IFHLGKMRAHSEALSVYNMLRYSK-RSMCKALHEKILHILI 146 (159)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 146 (159)
+.+.+...+.+...++++.....+ +++.. . ..++..+.
T Consensus 208 l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d-~-~~~~~~~~ 246 (324)
T PF11838_consen 208 LSALACSPDPELLKRLLDLLLSNDKVRSQD-I-RYVLAGLA 246 (324)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHCTSTS-TTT-H-HHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHcCCcccccHH-H-HHHHHHHh
Confidence 999999999999999999888754 44443 3 34444444
No 447
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.73 E-value=38 Score=20.40 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHH
Q 039637 83 LAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNM 125 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (159)
.+.++|..|...|+-. .+..|......+...|++++|..+|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7788888888776544 455677788888888889988888875
No 448
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.25 E-value=59 Score=22.43 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=8.9
Q ss_pred hcCCHHHHHHHHHH
Q 039637 7 RSGCFEETKQLAGD 20 (159)
Q Consensus 7 ~~~~~~~A~~~~~~ 20 (159)
-.+++++|.++|.+
T Consensus 26 g~~k~eeAadl~~~ 39 (288)
T KOG1586|consen 26 GSNKYEEAAELYER 39 (288)
T ss_pred CCcchHHHHHHHHH
Confidence 34567777777654
No 449
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.24 E-value=69 Score=23.23 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHh----cCCCCChhhHHHHHHH-HHccChHHHHHHHHHHHHHcCCCCcH----HH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDE----LAISPDYNTFHILIKY-FCKEKMYMLAYRTMVDMHRKGHQPEE----EL 102 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~g~~~~~----~~ 102 (159)
.+-....-||+.||-+.|++.+.+..+ .|.+.|...+.+-+.. |....-..+.++..+.+.+.|..-+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 444555566777777766666554433 3555555555443333 22223334444445555555543321 22
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 103 CSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
|..+- +....++.+|-.+|-+..
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 22221 223456666666665544
No 450
>COG5210 GTPase-activating protein [General function prediction only]
Probab=57.74 E-value=54 Score=25.01 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 51 HVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 51 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
+++..|...|+.+...++..++..+.+.-..+.+.++++.+.-.|.......+-+++..
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~ 421 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKL 421 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
No 451
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.47 E-value=32 Score=19.15 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=19.0
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHcCCCCcHHH
Q 039637 70 ILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEEL 102 (159)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 102 (159)
++++.+.++.--++|+++++.|.+.| ..+...
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~ 67 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEM 67 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 34555556666667777777777666 244433
No 452
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=56.48 E-value=80 Score=23.41 Aligned_cols=127 Identities=13% Similarity=-0.036 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCC---C--CChhhHHHHHHHHHccChHHHHHHHHHHHHH----cCCCCcHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAI---S--PDYNTFHILIKYFCKEKMYMLAYRTMVDMHR----KGHQPEEEL 102 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~~~~~~ 102 (159)
..-++-+++.-.+.++.+++.|+....-.- . .....|..|-..|.+.+|+++|.-+.....+ .++..-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 445677777788889999999887664311 1 1246788888889999999988776655442 222211112
Q ss_pred HH-----HHHHHHHccCCHHHHHHHHHHHH----hCCCCC-CHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 103 CS-----SLIFHLGKMRAHSEALSVYNMLR----YSKRSM-CKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 103 ~~-----~li~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
|. .+.-++-..|.+-.|.+..++.. ..|..+ .......+.+.|-..|+.|.|+.-|
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHH
Confidence 22 23344556677766766665332 234332 2334556778888999998887544
No 453
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=56.37 E-value=60 Score=21.92 Aligned_cols=82 Identities=9% Similarity=0.100 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhHhcCCC-------CChhhHHHHHHHHHccCh---------HHHHHHHHHHHHHcCCCC-cHHHHHHHHH
Q 039637 46 MESVMHVMRKLDELAIS-------PDYNTFHILIKYFCKEKM---------YMLAYRTMVDMHRKGHQP-EEELCSSLIF 108 (159)
Q Consensus 46 ~~~a~~~~~~m~~~~~~-------~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~~-~~~~~~~li~ 108 (159)
.+.|..+++.|-...++ -...-|..+..+|.+.|- .+.-..+++..++.|++- =++.|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 46678888887655332 245678889999988763 445667777777877652 3458888887
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 039637 109 HLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~ 127 (159)
---..-++++..+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 7777778888888887664
No 454
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=56.00 E-value=49 Score=23.49 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=30.6
Q ss_pred HHHHHccChHHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHHccCCHHHHHHHHHHHHh
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCS--SLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
...+...+.++.|+..++.-...-..|-...+. .+.+.+...|..+.|..+++.+..
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666777777766533222223222222 334556666777777776666554
No 455
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=55.78 E-value=1.4e+02 Score=25.93 Aligned_cols=150 Identities=17% Similarity=0.061 Sum_probs=92.4
Q ss_pred HhcCCHHHHHH------HHH-HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHh-----cCCC-C-ChhhHHHH
Q 039637 6 CRSGCFEETKQ------LAG-DFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE-----LAIS-P-DYNTFHIL 71 (159)
Q Consensus 6 ~~~~~~~~A~~------~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~-~-~~~~~~~l 71 (159)
...|.+.+|.+ +++ .|.... ++....|..+...+.+.++.++|+..-.+..- .|.. | +...|..+
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h-~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLH-PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcc-hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 34556666665 554 232222 23556788888899999999998877544321 1222 2 24556666
Q ss_pred HHHHHccChHHHHHHHHHHHHHc-----C--CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-------CCCCHHH
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHRK-----G--HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-------RSMCKAL 137 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~-----g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~ 137 (159)
...+...+....+...+.+.... | ++|...+++.+-..+...+..+.|.++.+...+.. .-.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 66666667777777777766532 2 33444555555555556688999999888765421 1234456
Q ss_pred HHHHHHHHHhcCcHHHHhh
Q 039637 138 HEKILHILISGKLLKDAYI 156 (159)
Q Consensus 138 ~~~l~~~~~~~g~~~~A~~ 156 (159)
|..+-+.....+++..|..
T Consensus 1102 ~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALE 1120 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHH
Confidence 7777777777777777654
No 456
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=55.58 E-value=53 Score=21.12 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhCC----CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHhHh-cCCCCChhhHHHHHHHHHccChH
Q 039637 10 CFEETKQLAGDFEAKY----DKYDV---VLLNSMLCAYCRTGDMESVMHVMRKLDE-LAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~~----~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
+-++|.-+|..+.+.. ..++. ......+..+.+..+ -++++.+.+ .|+.|...++.-++..+++.=.+
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYD----PDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 4566777777665432 23332 223333344444433 355666664 78889988999889999887789
Q ss_pred HHHHHHHHHHHHcC
Q 039637 82 MLAYRTMVDMHRKG 95 (159)
Q Consensus 82 ~~a~~~~~~m~~~g 95 (159)
+.+.++++.+...|
T Consensus 184 ~~~~riwD~~l~eG 197 (199)
T smart00164 184 EIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998777
No 457
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=55.08 E-value=1.3e+02 Score=25.43 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=53.7
Q ss_pred hcCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC
Q 039637 42 RTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR 114 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 114 (159)
....+.+++++|+.|...|+.+.. ..|...-..+.+.+.+.+|..+|+.=++....|-...-..+-....+.+
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM 163 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 556788999999999999997775 4455666778888899999999988877777776555444444444433
No 458
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=54.48 E-value=28 Score=19.41 Aligned_cols=32 Identities=3% Similarity=-0.008 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 039637 26 DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLD 57 (159)
Q Consensus 26 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 57 (159)
+.|+...||.+++...+.++..-|..++.+..
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V 43 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIV 43 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHc
Confidence 56888888888888888877777766655543
No 459
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=54.17 E-value=68 Score=21.93 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhHhc
Q 039637 9 GCFEETKQLAGDFEAKYDKYD-VVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 59 (159)
|-+..|.-=|..-.. +.|+ +.+||-+---+...|+++.|.+.|+...+.
T Consensus 79 GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 79 GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 444444444433333 3443 568888888888999999999999998874
No 460
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=53.85 E-value=4.3 Score=31.06 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=0.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHhHhcCCCCCh--hhHHHHHHHHHcc
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAY--CRTGDMESVMHVMRKLDELAISPDY--NTFHILIKYFCKE 78 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~ 78 (159)
+++.+.|+++.|..+++.+......+.....-.++.+- ...|+++.|++.+.......+.+.. ..+.....++...
T Consensus 32 ~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~ 111 (536)
T PF04348_consen 32 RALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYEQQ 111 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 45666777777777777766544444444444444433 3456677777776643333333321 2222333445455
Q ss_pred ChHHHHH
Q 039637 79 KMYMLAY 85 (159)
Q Consensus 79 ~~~~~a~ 85 (159)
|++-++.
T Consensus 112 ~~~l~Aa 118 (536)
T PF04348_consen 112 GDPLAAA 118 (536)
T ss_dssp -------
T ss_pred CCHHHHH
Confidence 5544433
No 461
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=53.75 E-value=43 Score=20.83 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039637 106 LIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145 (159)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (159)
++.-+-+.|-+.+...+++++...|+..+..+|+..+...
T Consensus 115 vL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 115 VLALAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 3444456688888889999999999999998888776644
No 462
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.66 E-value=15 Score=26.42 Aligned_cols=90 Identities=10% Similarity=-0.025 Sum_probs=55.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHccChHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-NTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a 84 (159)
...|.++.|++.|..-+..++ ++...|..-.+++.+.+++..|+.=+....+ +.||. ..|-.--.+-...|+|+++
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 345777777777777666543 3566666667777777778777777766655 44543 2222222233345777777
Q ss_pred HHHHHHHHHcCCCC
Q 039637 85 YRTMVDMHRKGHQP 98 (159)
Q Consensus 85 ~~~~~~m~~~g~~~ 98 (159)
-..+....+.+..+
T Consensus 202 a~dl~~a~kld~dE 215 (377)
T KOG1308|consen 202 AHDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHHhccccH
Confidence 77777777665443
No 463
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.63 E-value=88 Score=23.06 Aligned_cols=123 Identities=16% Similarity=0.125 Sum_probs=66.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--------cCCh--------HHHHHHHHHhHh-------cCC
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR--------TGDM--------ESVMHVMRKLDE-------LAI 61 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------~~~~--------~~a~~~~~~m~~-------~~~ 61 (159)
|.-.+++++|+.+|....- .|....-...+++|-+ .|+. ..|.+.++.|.. .-.
T Consensus 193 ciglk~fe~Al~~~e~~v~---~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~ 269 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT---TPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYL 269 (422)
T ss_pred eeccccHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHh
Confidence 4456899999999998873 4554444455555433 4554 335555544431 111
Q ss_pred CCChhhHHHHHHH----HHccChHHHHHHHHHHHHHcCCCCcHHHHHHH----HHHHHccCCHHHHHHHHHHHHhCC
Q 039637 62 SPDYNTFHILIKY----FCKEKMYMLAYRTMVDMHRKGHQPEEELCSSL----IFHLGKMRAHSEALSVYNMLRYSK 130 (159)
Q Consensus 62 ~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~ 130 (159)
+....+..+++.. +.+-++..-+......+.++.+.--..+|.++ |.-..+.+..++|.+..-.|.+.|
T Consensus 270 ~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 270 KDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred cCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 1112224444433 33445566666666666665554445566554 233334566777777666665544
No 464
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=53.58 E-value=93 Score=23.30 Aligned_cols=51 Identities=16% Similarity=0.002 Sum_probs=33.4
Q ss_pred ChhhHHHHHHHHHc---cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC
Q 039637 64 DYNTFHILIKYFCK---EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR 114 (159)
Q Consensus 64 ~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 114 (159)
+-..+-.+++++-+ -.+++.|+-++.+|++.|..|....-..++-++...|
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 33445557777654 3688899999999999887665444444444444444
No 465
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=53.28 E-value=40 Score=19.00 Aligned_cols=44 Identities=7% Similarity=-0.031 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 86 RTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
++|+-....|+..|+..|..++....-.=.++...++++.|-..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 77777788899999999999999888888888888999888753
No 466
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=52.96 E-value=44 Score=19.35 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC--hHHHHHHHHHHHHHcC
Q 039637 34 NSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK--MYMLAYRTMVDMHRKG 95 (159)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g 95 (159)
..++..|...+++++|.+.+.++.... -.......++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 345666677778888887777765421 12233334444444432 2333445555555444
No 467
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=52.89 E-value=70 Score=21.71 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=40.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc-cChHHHHHHHHHHHHHc
Q 039637 36 MLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK-EKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~ 94 (159)
++..+-+.++++++...++++...+...+..--+.+..+|-. .|....+++++..+...
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 455667788899999999999888777777777767666632 36666777777776643
No 468
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=52.70 E-value=1.3e+02 Score=24.55 Aligned_cols=88 Identities=15% Similarity=0.064 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcC----CC---CC-------------------hhhHHHHHHHH---
Q 039637 25 YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA----IS---PD-------------------YNTFHILIKYF--- 75 (159)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~---~~-------------------~~~~~~ll~~~--- 75 (159)
++..+..+...++... .|+..+++.+++.+.... .. .+ ...|. .++++
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd-~Isa~~ks 268 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFD-TISAFIKS 268 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHH-HHHHHHHH
Confidence 3445555666555543 677777777777654311 00 00 01121 33333
Q ss_pred HccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 039637 76 CKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (159)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (159)
++.+|++.|+.++..|.+.|..|....-..++.+....|.
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 3457888888888888888876654444444444444453
No 469
>COG0819 TenA Putative transcription activator [Transcription]
Probab=52.34 E-value=70 Score=21.52 Aligned_cols=95 Identities=8% Similarity=0.018 Sum_probs=54.1
Q ss_pred cCCCCChhhHHHHHHHHHccChHHHHHH-----------HHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 59 LAISPDYNTFHILIKYFCKEKMYMLAYR-----------TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 59 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~-----------~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
....|....|+.-+...+..|++.+... +..++.+.+..+....|..-|+.|....-.+.+..+.+.+-
T Consensus 103 ~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld 182 (218)
T COG0819 103 TEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEELEALLD 182 (218)
T ss_pred cCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3455677888999999999998765442 22223333332345688889999887543333333333332
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCcHHH
Q 039637 128 YSKRSMCKALHEKILHILISGKLLKD 153 (159)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (159)
......+..-...+.+.+...-+++.
T Consensus 183 ~~~~~~~~~~~~~l~~iF~~ss~~E~ 208 (218)
T COG0819 183 SLAENSSEEELEKLKQIFLTASRFEL 208 (218)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 22222344455677776666555443
No 470
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=52.31 E-value=53 Score=20.13 Aligned_cols=28 Identities=7% Similarity=-0.032 Sum_probs=17.2
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHcCC
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHRKGH 96 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (159)
..++--+.-.|+++.|+++.....+.|.
T Consensus 52 ~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 52 MTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred HhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 3344455566777777777766666664
No 471
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=51.79 E-value=45 Score=20.77 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039637 65 YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (159)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (159)
..|...++.|.. .|-..+...++++|.+.|...+...++..++-.
T Consensus 110 ~GtlGvL~~ak~-kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 110 TGTLGVLALAKS-KGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred eehhHHHHHHHH-cCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 456665665554 477888889999999999998888888777654
No 472
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.59 E-value=1.1e+02 Score=23.76 Aligned_cols=62 Identities=8% Similarity=-0.049 Sum_probs=28.1
Q ss_pred ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 64 DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
+...-.-++..|.+.|-.+.+.++.+.+-.+-. ...-|..-+..+.+.|+.+....+-+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444556677777777777777777776654422 23456666777777777776666655544
No 473
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.20 E-value=85 Score=23.87 Aligned_cols=107 Identities=9% Similarity=-0.030 Sum_probs=67.5
Q ss_pred HHHHHhcCChHHHHHHHHHhHhcCCCCChhh-HHHHHHHHHccChHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccC
Q 039637 37 LCAYCRTGDMESVMHVMRKLDELAISPDYNT-FHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE-EELCSSLIFHLGKMR 114 (159)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g 114 (159)
.+.+.+.++++.|..++.+..+ +.||-.. |..--.++.+.+++..|+.=.....+.. |+ ...|-.=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 3455677889999999999988 5686544 4444478889999998887777766643 32 122222223333344
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039637 115 AHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (159)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (159)
...+|...|+... ...|+..-...++.-|-+..
T Consensus 87 ~~~~A~~~l~~~~--~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 87 EFKKALLDLEKVK--KLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHHHHHHhh--hcCcCcHHHHHHHHHHHHHH
Confidence 5566666666554 35677666677776655443
No 474
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.86 E-value=2.3e+02 Score=27.89 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.7
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 039637 4 AFCRSGCFEETKQLAGDFE 22 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~ 22 (159)
.|.+.|.|++|...|++..
T Consensus 2491 s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2491 SYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHhhhHHHHhhHHHHHH
Confidence 4678899999999998754
No 475
>PRK14135 recX recombination regulator RecX; Provisional
Probab=50.15 E-value=81 Score=21.63 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=19.3
Q ss_pred HHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCC
Q 039637 49 VMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQ 97 (159)
Q Consensus 49 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 97 (159)
+..++..+.+.|.--|..--...+....+.+.. .-.++-..+.+.|++
T Consensus 91 Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~~-g~~~I~~kL~~kGi~ 138 (263)
T PRK14135 91 ISEVIDKLKEEKYIDDKEYAESYVRTNINTGDK-GPRVIKQKLLQKGIE 138 (263)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcccc-chHHHHHHHHHcCCC
Confidence 344445555555433322222333333332221 123444555555553
No 476
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.82 E-value=84 Score=21.69 Aligned_cols=25 Identities=28% Similarity=0.109 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHH
Q 039637 99 EEELCSSLIFHLGKMRAHSEALSVY 123 (159)
Q Consensus 99 ~~~~~~~li~~~~~~g~~~~a~~~~ 123 (159)
++.....+...|.+.|++.+|.+-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5666777777777777777766544
No 477
>PRK14136 recX recombination regulator RecX; Provisional
Probab=49.71 E-value=94 Score=22.21 Aligned_cols=97 Identities=15% Similarity=0.082 Sum_probs=56.2
Q ss_pred HHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 039637 47 ESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNML 126 (159)
Q Consensus 47 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (159)
+.+..++.++.+.|+.-|..--..++... .+.+ .-..+-.++.++|+..+ +....+..+ ....++.|..++++-
T Consensus 194 e~IE~VIerLke~gYLDDeRFAesyVr~R--~~kk-Gp~rIrqELrQKGId~e--LIEqALeei-eEDE~E~A~~L~eKK 267 (309)
T PRK14136 194 DSVEPLLDALEREGWLSDARFAESLVHRR--ASRV-GSARIVSELKRHAVGDA--LVESVGAQL-RETEFERAQAVWRKK 267 (309)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHH--hhch-hHHHHHHHHHHcCCCHH--HHHHHHHhc-cHhHHHHHHHHHHHH
Confidence 45667778888877755554444455432 2332 33567788888887543 333444433 334567777777654
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 127 RYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
.. ..+.+..-...++..+...|-
T Consensus 268 ~~-~~~~d~kek~K~iRfL~rRGF 290 (309)
T PRK14136 268 FG-ALPQTPAERAKQARFLAARGF 290 (309)
T ss_pred hc-ccCcCHHHHHHHHHHHHHCCC
Confidence 32 233344445677777777773
No 478
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=49.63 E-value=28 Score=26.21 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhh
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT 67 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 67 (159)
...+++|+++.++..+.|.+.+ .|-.-.|.+++.++.+.|+.||..|
T Consensus 216 a~~ldeAl~~a~~~~~ag~p~S-------------Igl~GNaaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 216 AETLDEALALAEEATAAGEPIS-------------IGLLGNAAEILPELLRRGIRPDLVT 262 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCceE-------------EEEeccHHHHHHHHHHcCCCCceec
Confidence 3556666666666665554322 2333446777788888888876543
No 479
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.48 E-value=92 Score=22.07 Aligned_cols=146 Identities=11% Similarity=-0.006 Sum_probs=94.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHhHh---cCC--CCChhhHHHHHHHHHcc
Q 039637 7 RSGCFEETKQLAGDFEAKYDKYDVV---LLNSMLCAYCRTGDMESVMHVMRKLDE---LAI--SPDYNTFHILIKYFCKE 78 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~--~~~~~~~~~ll~~~~~~ 78 (159)
+...+++|+.-|.+..+.......+ ..-.++..+.+.+++++.++.|.+|.. +.+ .-+..+.+.+++.-+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457889999999877654443444 445678889999999999999988863 222 23456778888887777
Q ss_pred ChHHHHHHHHHHHHHc-----CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----------CCCCHHHHHHHH
Q 039637 79 KMYMLAYRTMVDMHRK-----GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-----------RSMCKALHEKIL 142 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~ 142 (159)
++.+....+++.-++. +-..--.|-.-|...|...|.+.+..+++++++.+- ...-..+|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 7766555555544321 111222233567777888888888888888776421 112234677777
Q ss_pred HHHHhcCcHH
Q 039637 143 HILISGKLLK 152 (159)
Q Consensus 143 ~~~~~~g~~~ 152 (159)
+.|...++-.
T Consensus 199 QmYT~qKnNK 208 (440)
T KOG1464|consen 199 QMYTEQKNNK 208 (440)
T ss_pred hhhhhhcccH
Confidence 7777666543
No 480
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.43 E-value=1.5e+02 Score=24.59 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=37.9
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc
Q 039637 6 CRSGCFEETKQLAGDFEAK----YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL 59 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 59 (159)
...|+++.|.++-+..... -..+....+..+..+..-.|++++|..+..+..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 4567888888887765433 22345667788888888889999888777665543
No 481
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.35 E-value=77 Score=21.16 Aligned_cols=63 Identities=13% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039637 81 YMLAYRTMVDMHRKGHQPEE-----ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (159)
+..|.+.|.+..+....|.. ...-.+.....+.|+.++|.+.|.++...+.........-+.+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
No 482
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.24 E-value=57 Score=19.63 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=34.7
Q ss_pred HHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHH
Q 039637 48 SVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVD 90 (159)
Q Consensus 48 ~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 90 (159)
++.++|+.|..+|+--. ...|..-...+...|++.+|.+++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 89999999999988554 45667777788889999999999874
No 483
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=48.93 E-value=1.6e+02 Score=24.75 Aligned_cols=124 Identities=10% Similarity=0.072 Sum_probs=57.8
Q ss_pred hhHHHhcCCHHHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHh-cCChHHHHHHHHHhHhcCCCCChhhHHHHH-----
Q 039637 2 ISAFCRSGCFEETKQLAGDFE-AKYD--KYDVVLLNSMLCAYCR-TGDMESVMHVMRKLDELAISPDYNTFHILI----- 72 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~-~~~~--~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll----- 72 (159)
+.-+...+++.+|..+.++=+ ..++ ..|+..|-.=+..+.+ .++.+-.-.++..+.+..+.- ..|....
T Consensus 701 ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~--tmY~~~~~~~~~ 778 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTK--TMYKDTYPPSSE 778 (928)
T ss_pred HHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccc--cccccccccccc
Confidence 345677788888877643311 1121 1233344333444443 344444444444444432211 2222111
Q ss_pred -------HHHHccChHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHccC--CHHHHHHHHHHHHhC
Q 039637 73 -------KYFCKEKMYMLAYRTMVDMHRKGHQPEE-ELCSSLIFHLGKMR--AHSEALSVYNMLRYS 129 (159)
Q Consensus 73 -------~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g--~~~~a~~~~~~~~~~ 129 (159)
......++.+...+.+....+. ..+. .-...++.+|.+.+ ++++|++....++..
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 1112223333333333333322 2222 23456777787777 788888887777754
No 484
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.72 E-value=2.2e+02 Score=26.74 Aligned_cols=111 Identities=11% Similarity=0.075 Sum_probs=69.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhcCC--CCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 039637 35 SMLCAYCRTGDMESVMHVMRKLDELAI--SPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (159)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (159)
.+..+-.+++.+..|...+++-..... .....-|..+...|...++++....+...... .|+ .+ .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHh
Confidence 455577788999999999988311111 11234444555689999999988877765221 233 33 34555678
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHH
Q 039637 113 MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLK 152 (159)
Q Consensus 113 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (159)
.|+++.|...|+.+...+. +...+++-++..-...|.+.
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~ 1500 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLS 1500 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchh
Confidence 8999999999999986432 22444454444444444433
No 485
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.62 E-value=47 Score=18.47 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (159)
.+.+.+++..+..+|. .+|..+..++...|.
T Consensus 46 ~~q~~~LLd~L~~RG~----~AF~~F~~aL~~~~~ 76 (84)
T cd08326 46 RDQARQLLIDLETRGK----QAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHHHHhcCH----HHHHHHHHHHHhcCc
Confidence 3444444444444431 244444444444443
No 486
>PRK00847 thyX FAD-dependent thymidylate synthase; Reviewed
Probab=48.39 E-value=80 Score=21.07 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=9.0
Q ss_pred HHHHHHHHHhHhcCCC
Q 039637 47 ESVMHVMRKLDELAIS 62 (159)
Q Consensus 47 ~~a~~~~~~m~~~~~~ 62 (159)
+.+.+.|+++.+.|+.
T Consensus 131 ~~~~~~Y~~l~~~g~~ 146 (217)
T PRK00847 131 EAAYEAYEELLEKGIA 146 (217)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4455666666665543
No 487
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=48.25 E-value=48 Score=20.62 Aligned_cols=37 Identities=8% Similarity=0.034 Sum_probs=20.8
Q ss_pred HHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHH
Q 039637 37 LCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIK 73 (159)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 73 (159)
+..+.+.+....+.++.+.+.+.|+..+..|.+..+.
T Consensus 7 i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 7 IKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3444455555566666666666666666555555443
No 488
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=48.22 E-value=86 Score=24.42 Aligned_cols=63 Identities=10% Similarity=0.092 Sum_probs=41.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHhHhcCCCCCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDME--SVMHVMRKLDELAISPDY 65 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~~~ 65 (159)
+-+...|-...-...+..+++..|..++..+..|+..|.+..+-. .++.-++.+.-.|+-||.
T Consensus 92 ~~lls~GT~~DrIsalTLLVq~sP~h~~k~letLls~C~kksrn~a~q~l~~lKDLfi~gllp~r 156 (821)
T COG5593 92 KDLLSHGTVKDRISALTLLVQRSPSHNAKNLETLLSFCEKKSRNVAYQVLKNLKDLFISGLLPNR 156 (821)
T ss_pred HHHHhcCchhhhhhhhHhhhccCcchHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhcccCcch
Confidence 344556666666666677787777777889999998887655322 344555555566777753
No 489
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=48.21 E-value=45 Score=18.16 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (159)
+.+.|...+..+.... .-++..||++...+.+++- .-+...|+..+..-+-.+
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RHkF-----------~iskl~pd~~~LG~L~~a 64 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRHKF-----------QISKLQPDENILGELAAA 64 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHccc-----------hhhhcCccHHHHHHHHHH
Confidence 4455555555555432 3466778777666555431 223456676665544443
No 490
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=47.91 E-value=6.1 Score=30.29 Aligned_cols=88 Identities=14% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHH--HHccChHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHH
Q 039637 35 SMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY--FCKEKMYMLAYRTMVDMHRKGHQPE--EELCSSLIFHL 110 (159)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~ 110 (159)
..+.++.+.|++..|..++.++....+.|.......++.+ ....|+++.|++.+........++. ...+.....+|
T Consensus 29 ~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~ 108 (536)
T PF04348_consen 29 LAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAY 108 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHH
Confidence 4456788999999999999999977777777777777776 4557899999999876443333332 22334455667
Q ss_pred HccCCHHHHHHH
Q 039637 111 GKMRAHSEALSV 122 (159)
Q Consensus 111 ~~~g~~~~a~~~ 122 (159)
...|++-+|.+.
T Consensus 109 ~~~~~~l~Aa~~ 120 (536)
T PF04348_consen 109 EQQGDPLAAARE 120 (536)
T ss_dssp ------------
T ss_pred HhcCCHHHHHHH
Confidence 777776666554
No 491
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=47.46 E-value=34 Score=17.91 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=17.6
Q ss_pred hcCChHHHHHHHHHhHhcCCCC
Q 039637 42 RTGDMESVMHVMRKLDELAISP 63 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~~ 63 (159)
...|++.|...|.++...|--|
T Consensus 37 ~~Wd~~~Al~~F~~lk~~~~IP 58 (63)
T smart00804 37 NNWDYERALKNFTELKSEGSIP 58 (63)
T ss_pred cCCCHHHHHHHHHHHHhcCCCC
Confidence 3679999999999999765444
No 492
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.21 E-value=98 Score=21.72 Aligned_cols=107 Identities=9% Similarity=-0.017 Sum_probs=57.8
Q ss_pred HHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHH
Q 039637 39 AYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE 118 (159)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 118 (159)
...+..+..+..+.+..+.. ...-...+......|++..|++++.+..+.-- +...++++=..-. ++++
T Consensus 107 ~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~--~l~~~~c~~~L~~---~L~e 175 (291)
T PF10475_consen 107 LQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLLE--ELKGYSCVRHLSS---QLQE 175 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hcccchHHHHHhH---HHHH
Confidence 33344444444444444433 23334566667788999999999887765311 1112222211111 1222
Q ss_pred HHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 119 ALSVYNMLRYS-----KRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 119 a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
.....+.+... -...|+..|..+..+|.-.|+...+.+
T Consensus 176 ~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 176 TLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 22222222211 125788899999999999998777654
No 493
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.99 E-value=90 Score=21.21 Aligned_cols=155 Identities=11% Similarity=0.028 Sum_probs=87.1
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC-
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR-TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK- 79 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~- 79 (159)
.+.+-+.+++++..+.++.+...++..+..-.|.+-.+|-. .|....+.+.+....+..-.-.......++..|.+.=
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~kie 87 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKIE 87 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHHH
Confidence 45677889999999999999999888899999999988854 4666777777777665422122244555665554321
Q ss_pred -h-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC-----------------HHHHHHHHHHHHh---CCCCCCHHH
Q 039637 80 -M-YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA-----------------HSEALSVYNMLRY---SKRSMCKAL 137 (159)
Q Consensus 80 -~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~~~~---~~~~~~~~~ 137 (159)
+ ..-+.++++- ....+-|....-.+-+-.+--.|+ .+.|.+.|+.... ...+|...+
T Consensus 88 ~EL~~~C~eii~l-Id~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 88 DELIDICNEIIRL-IDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHH-HHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHH-HHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Confidence 1 1122233332 334455554444444433332343 2566666665432 224555443
Q ss_pred H-----HHHHHHHHhcCcHHHHhhh
Q 039637 138 H-----EKILHILISGKLLKDAYIV 157 (159)
Q Consensus 138 ~-----~~l~~~~~~~g~~~~A~~~ 157 (159)
+ |.-+-.|--.|+.++|.++
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~i 191 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEI 191 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHH
Confidence 2 3333455567888888765
No 494
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=46.87 E-value=89 Score=21.14 Aligned_cols=82 Identities=7% Similarity=0.009 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHhHhcCCCC-ChhhHHHH
Q 039637 10 CFEETKQLAGDFEAK--------YDKYDVVLLNSMLCAYCRTGD---------MESVMHVMRKLDELAISP-DYNTFHIL 71 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~~-~~~~~~~l 71 (159)
..+.|..++..|--. |.. ...-|..+..+|++.|- .+.-.++++-.++.|++. =++.|+.+
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~-~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssi 214 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLK-HLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSI 214 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcc-cHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceec
Confidence 357788887776533 222 56778999999999873 455677777777888733 35888888
Q ss_pred HHHHHccChHHHHHHHHHHHH
Q 039637 72 IKYFCKEKMYMLAYRTMVDMH 92 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~ 92 (159)
|+--.-.-++++..+++..++
T Consensus 215 IDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 215 IDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccccCCCCHHHHHHHHHHhh
Confidence 877776777888888887664
No 495
>PRK09687 putative lyase; Provisional
Probab=46.76 E-value=99 Score=21.62 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLD 57 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 57 (159)
+..+--..+.++++.++ .++...+-.+.
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L 168 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLL 168 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHh
Confidence 44444555555555554 23444444443
No 496
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.35 E-value=1.4e+02 Score=23.12 Aligned_cols=76 Identities=7% Similarity=0.077 Sum_probs=51.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-------------CCChhhHHHHHHHHHccChHHHHHHH
Q 039637 21 FEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-------------SPDYNTFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 21 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-------------~~~~~~~~~ll~~~~~~~~~~~a~~~ 87 (159)
+.+.|+..+......++.. ..|++..|..++++....|- .++......++++... ++.+.+..+
T Consensus 191 l~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~ 267 (509)
T PRK14958 191 LKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGC 267 (509)
T ss_pred HHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 4456777676666666555 36889999888877665431 1223333445665554 888999999
Q ss_pred HHHHHHcCCCCc
Q 039637 88 MVDMHRKGHQPE 99 (159)
Q Consensus 88 ~~~m~~~g~~~~ 99 (159)
++.+...|..|.
T Consensus 268 ~~~l~~~g~~~~ 279 (509)
T PRK14958 268 VTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHcCCCHH
Confidence 999999998765
No 497
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.97 E-value=1.3e+02 Score=22.97 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=36.2
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
..|+.-|...|+..+|..++.++.- .+-.+...+.+++-+..+.|+-...+.+++..-
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf 570 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECF 570 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5667777777777777777766531 122245567777777777777655555554443
No 498
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=45.33 E-value=1.2e+02 Score=22.15 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHH
Q 039637 12 EETKQLAGDFEAKYDKYDVV----LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYF 75 (159)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 75 (159)
+++..+++.+++. .|+.. -|-+++....+.|.++.++.+|++.+..|..|-...-.++++..
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
No 499
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=45.22 E-value=47 Score=17.44 Aligned_cols=40 Identities=3% Similarity=-0.035 Sum_probs=17.0
Q ss_pred HHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC
Q 039637 40 YCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (159)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 79 (159)
+.+.+.+-....+.+.+...|...+..+....+++.-+.|
T Consensus 7 L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 7 LAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3334444444444444444444444444444444444333
No 500
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=44.63 E-value=1.2e+02 Score=21.94 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=55.8
Q ss_pred hHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH------------HHHccCCHHHHHHHH
Q 039637 56 LDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF------------HLGKMRAHSEALSVY 123 (159)
Q Consensus 56 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~------------~~~~~g~~~~a~~~~ 123 (159)
..+.|+..+...+..++... .|++..|+-.++++-..|-..+...-+..+. -.+..++.+...+..
T Consensus 201 a~~E~v~~d~~al~~I~~~S--~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~ 278 (346)
T KOG0989|consen 201 ASKEGVDIDDDALKLIAKIS--DGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTVKRV 278 (346)
T ss_pred HHHhCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHHH
Confidence 34567888888888766654 4888888888888876554444222222222 235567888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc
Q 039637 124 NMLRYSKRSMCKALHEKILHILISG 148 (159)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (159)
+++...|..|-. ..+.+.......
T Consensus 279 Rei~~sg~~~~~-lmsQLa~vi~~~ 302 (346)
T KOG0989|consen 279 REIMRSGYSPLQ-LMSQLAEVIMDI 302 (346)
T ss_pred HHHHHhccCHHH-HHHHHHHHHHhc
Confidence 877777766543 334444444443
Done!