Query 039637
Match_columns 159
No_of_seqs 197 out of 1407
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 20:10:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 9.1E-39 3.1E-43 230.9 19.2 158 2-159 33-199 (501)
2 4g26_A Pentatricopeptide repea 100.0 5.4E-34 1.8E-38 206.0 16.9 150 1-150 67-225 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 2.5E-26 8.6E-31 173.4 11.1 128 30-157 127-258 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 5.3E-26 1.8E-30 171.7 8.9 122 1-122 133-258 (1134)
5 2xpi_A Anaphase-promoting comp 99.8 1.1E-18 3.9E-23 128.0 17.9 154 2-158 380-539 (597)
6 2xpi_A Anaphase-promoting comp 99.8 1.3E-18 4.3E-23 127.7 17.8 155 2-159 414-574 (597)
7 2pl2_A Hypothetical conserved 99.7 2.4E-14 8.1E-19 93.2 17.9 150 3-158 13-174 (217)
8 1w3b_A UDP-N-acetylglucosamine 99.7 1.7E-14 5.9E-19 100.9 17.7 149 5-158 213-362 (388)
9 3vtx_A MAMA; tetratricopeptide 99.7 7.6E-14 2.6E-18 88.1 18.6 153 3-159 13-165 (184)
10 2ho1_A Type 4 fimbrial biogene 99.7 5.2E-14 1.8E-18 92.8 18.6 153 3-158 79-232 (252)
11 2vq2_A PILW, putative fimbrial 99.7 6.1E-14 2.1E-18 90.6 18.4 153 3-158 16-170 (225)
12 2pl2_A Hypothetical conserved 99.7 1.4E-14 4.7E-19 94.3 15.3 151 3-159 47-209 (217)
13 1w3b_A UDP-N-acetylglucosamine 99.6 3.2E-14 1.1E-18 99.5 17.8 148 6-158 180-328 (388)
14 3as5_A MAMA; tetratricopeptide 99.6 5.8E-14 2E-18 88.0 16.3 152 3-158 16-167 (186)
15 2ho1_A Type 4 fimbrial biogene 99.6 5.9E-14 2E-18 92.5 16.1 153 3-158 45-198 (252)
16 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-13 4.5E-18 90.2 17.2 152 3-158 65-216 (243)
17 2y4t_A DNAJ homolog subfamily 99.6 1.1E-13 3.7E-18 98.3 17.5 152 3-158 34-200 (450)
18 2vq2_A PILW, putative fimbrial 99.6 3.1E-13 1E-17 87.3 17.9 154 3-158 50-205 (225)
19 2y4t_A DNAJ homolog subfamily 99.6 7.5E-14 2.6E-18 99.1 16.2 152 2-158 67-234 (450)
20 3mkr_A Coatomer subunit epsilo 99.6 1.9E-13 6.6E-18 92.7 17.1 147 3-158 73-223 (291)
21 4eqf_A PEX5-related protein; a 99.6 7.7E-14 2.6E-18 96.8 14.8 59 99-158 212-270 (365)
22 2q7f_A YRRB protein; TPR, prot 99.6 1.6E-13 5.3E-18 89.8 14.6 152 3-158 31-182 (243)
23 3uq3_A Heat shock protein STI1 99.6 2.2E-13 7.4E-18 89.7 14.8 153 4-158 47-230 (258)
24 1fch_A Peroxisomal targeting s 99.6 7.6E-13 2.6E-17 91.6 18.2 58 100-158 217-274 (368)
25 4gyw_A UDP-N-acetylglucosamine 99.6 2.8E-13 9.6E-18 102.0 16.8 151 3-158 17-168 (723)
26 1fch_A Peroxisomal targeting s 99.6 1.9E-12 6.4E-17 89.6 19.7 153 3-158 106-308 (368)
27 3cv0_A Peroxisome targeting si 99.6 4.1E-13 1.4E-17 91.3 15.5 152 5-159 148-310 (327)
28 3uq3_A Heat shock protein STI1 99.5 4.2E-13 1.4E-17 88.3 14.8 153 3-158 13-196 (258)
29 3hym_B Cell division cycle pro 99.5 1.6E-12 5.5E-17 88.4 17.8 152 3-158 64-216 (330)
30 3hym_B Cell division cycle pro 99.5 5.9E-13 2E-17 90.6 15.5 150 5-157 135-292 (330)
31 4eqf_A PEX5-related protein; a 99.5 2.7E-13 9.2E-18 94.0 13.9 152 3-158 73-236 (365)
32 3mkr_A Coatomer subunit epsilo 99.5 1.7E-12 5.6E-17 88.1 16.7 146 3-158 109-258 (291)
33 3ieg_A DNAJ homolog subfamily 99.5 2.8E-12 9.6E-17 88.1 17.9 87 4-93 12-99 (359)
34 3ieg_A DNAJ homolog subfamily 99.5 2.8E-12 9.4E-17 88.1 17.3 151 3-158 45-211 (359)
35 4abn_A Tetratricopeptide repea 99.5 9.8E-13 3.3E-17 94.8 15.2 152 3-158 110-281 (474)
36 3cv0_A Peroxisome targeting si 99.5 1.5E-12 5.2E-17 88.5 15.2 52 5-57 65-116 (327)
37 3u4t_A TPR repeat-containing p 99.5 3.1E-12 1.1E-16 85.1 16.0 153 3-158 11-165 (272)
38 2fo7_A Synthetic consensus TPR 99.5 6.6E-12 2.3E-16 74.4 15.6 123 3-128 9-131 (136)
39 4i17_A Hypothetical protein; T 99.5 9.4E-12 3.2E-16 81.0 17.0 145 3-151 15-169 (228)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.3E-11 4.6E-16 82.0 17.1 117 4-124 52-168 (275)
41 2fo7_A Synthetic consensus TPR 99.4 2.2E-11 7.5E-16 72.1 15.3 125 31-158 2-126 (136)
42 2gw1_A Mitochondrial precursor 99.4 4.9E-12 1.7E-16 91.0 14.0 151 3-158 245-395 (514)
43 3nf1_A KLC 1, kinesin light ch 99.4 6.3E-12 2.1E-16 84.8 13.8 157 2-158 34-218 (311)
44 3edt_B KLC 2, kinesin light ch 99.4 1.6E-12 5.5E-17 86.5 10.6 157 3-159 51-276 (283)
45 3nf1_A KLC 1, kinesin light ch 99.4 6.2E-12 2.1E-16 84.9 13.5 157 3-159 77-302 (311)
46 1ouv_A Conserved hypothetical 99.4 1.2E-10 4.2E-15 77.7 19.5 143 4-158 15-173 (273)
47 3fp2_A TPR repeat-containing p 99.4 1.7E-11 5.8E-16 88.7 16.3 151 3-158 251-401 (537)
48 2ond_A Cleavage stimulation fa 99.4 6.2E-11 2.1E-15 80.8 18.1 153 3-158 107-264 (308)
49 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.3E-11 4.3E-16 82.1 14.3 150 5-158 15-167 (275)
50 1b89_A Protein (clathrin heavy 99.4 2.3E-13 7.8E-18 96.3 6.0 129 4-156 70-198 (449)
51 2gw1_A Mitochondrial precursor 99.4 7.7E-12 2.6E-16 89.9 14.1 153 3-158 312-472 (514)
52 3qky_A Outer membrane assembly 99.4 4.7E-11 1.6E-15 79.4 16.4 154 3-158 23-218 (261)
53 2ond_A Cleavage stimulation fa 99.4 7.7E-11 2.6E-15 80.3 17.2 144 11-159 80-227 (308)
54 1ouv_A Conserved hypothetical 99.4 2.3E-10 7.7E-15 76.4 19.1 139 8-158 55-209 (273)
55 2r5s_A Uncharacterized protein 99.4 7.5E-12 2.6E-16 78.6 11.0 152 3-158 14-167 (176)
56 1b89_A Protein (clathrin heavy 99.4 4.9E-12 1.7E-16 89.6 10.4 132 1-159 100-231 (449)
57 3as5_A MAMA; tetratricopeptide 99.4 1.4E-10 5E-15 72.3 15.4 123 3-128 50-172 (186)
58 3fp2_A TPR repeat-containing p 99.3 1E-10 3.6E-15 84.6 16.4 153 3-158 318-485 (537)
59 2vsy_A XCC0866; transferase, g 99.3 7.4E-11 2.5E-15 86.7 15.7 146 8-158 2-151 (568)
60 4ga2_A E3 SUMO-protein ligase 99.3 1.1E-11 3.8E-16 76.0 9.5 143 3-150 5-149 (150)
61 3edt_B KLC 2, kinesin light ch 99.3 2.5E-11 8.6E-16 80.7 12.0 153 6-158 12-192 (283)
62 4abn_A Tetratricopeptide repea 99.3 8.2E-11 2.8E-15 84.9 15.2 152 3-158 145-315 (474)
63 2yhc_A BAMD, UPF0169 lipoprote 99.3 3.9E-10 1.3E-14 73.5 17.1 152 3-158 12-207 (225)
64 3urz_A Uncharacterized protein 99.3 5.9E-11 2E-15 76.5 13.0 149 4-158 13-180 (208)
65 3qou_A Protein YBBN; thioredox 99.3 6.3E-11 2.1E-15 80.1 13.3 152 3-158 125-278 (287)
66 2h6f_A Protein farnesyltransfe 99.3 6.2E-11 2.1E-15 83.3 13.3 147 3-154 105-254 (382)
67 3vtx_A MAMA; tetratricopeptide 99.3 3.4E-10 1.2E-14 71.2 15.1 126 29-158 4-130 (184)
68 4i17_A Hypothetical protein; T 99.3 6.9E-10 2.4E-14 72.1 16.1 129 28-158 5-140 (228)
69 3u4t_A TPR repeat-containing p 99.3 4.4E-10 1.5E-14 74.6 15.1 153 3-158 45-202 (272)
70 1qqe_A Vesicular transport pro 99.3 1.2E-10 4E-15 78.9 11.8 156 3-158 45-222 (292)
71 4gyw_A UDP-N-acetylglucosamine 99.2 4.1E-10 1.4E-14 85.0 14.9 127 29-159 8-135 (723)
72 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.4E-09 8.3E-14 68.7 16.6 124 3-131 14-152 (213)
73 3u3w_A Transcriptional activat 99.2 1.5E-09 5.2E-14 73.4 15.1 157 2-158 82-260 (293)
74 2pzi_A Probable serine/threoni 99.2 3.4E-10 1.2E-14 85.0 12.9 147 6-158 402-557 (681)
75 2h6f_A Protein farnesyltransfe 99.2 1.1E-09 3.6E-14 77.1 14.4 151 3-158 139-299 (382)
76 3ulq_A Response regulator aspa 99.2 7E-10 2.4E-14 77.5 13.5 155 4-158 112-287 (383)
77 2ooe_A Cleavage stimulation fa 99.2 2.4E-09 8.3E-14 78.0 16.7 142 13-158 304-448 (530)
78 2ooe_A Cleavage stimulation fa 99.2 2.3E-09 8E-14 78.1 16.6 152 3-158 329-486 (530)
79 3gw4_A Uncharacterized protein 99.2 4.4E-10 1.5E-14 71.5 10.8 153 5-158 2-170 (203)
80 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.7E-09 9.3E-14 68.4 14.3 123 31-158 7-144 (213)
81 1na0_A Designed protein CTPR3; 99.2 7.3E-09 2.5E-13 60.3 14.7 117 29-148 8-124 (125)
82 3mv2_B Coatomer subunit epsilo 99.1 2.6E-09 9E-14 72.6 13.9 144 3-150 108-270 (310)
83 1a17_A Serine/threonine protei 99.1 7.7E-09 2.6E-13 63.5 15.0 120 4-126 22-143 (166)
84 1qqe_A Vesicular transport pro 99.1 3E-09 1E-13 71.9 14.1 154 3-158 85-263 (292)
85 4a1s_A PINS, partner of inscut 99.1 4.1E-10 1.4E-14 79.0 9.8 155 3-158 56-246 (411)
86 2pzi_A Probable serine/threoni 99.1 6E-10 2E-14 83.7 11.1 142 3-150 441-583 (681)
87 2qfc_A PLCR protein; TPR, HTH, 99.1 1.4E-08 4.8E-13 68.6 16.6 157 2-158 82-260 (293)
88 2e2e_A Formate-dependent nitri 99.1 9.2E-10 3.2E-14 68.8 10.0 123 5-130 20-145 (177)
89 1a17_A Serine/threonine protei 99.1 9.9E-09 3.4E-13 63.0 14.5 126 30-158 13-140 (166)
90 1na0_A Designed protein CTPR3; 99.1 9.2E-09 3.1E-13 59.9 13.4 107 3-112 17-123 (125)
91 3q15_A PSP28, response regulat 99.1 2.6E-09 8.8E-14 74.6 12.7 155 4-158 110-284 (378)
92 2lni_A Stress-induced-phosphop 99.1 8.9E-09 3E-13 60.8 13.4 120 27-149 13-132 (133)
93 4gco_A Protein STI-1; structur 99.1 1E-08 3.6E-13 60.8 13.4 110 30-142 13-122 (126)
94 3ulq_A Response regulator aspa 99.1 1.4E-09 4.7E-14 76.1 10.9 154 3-158 192-362 (383)
95 3mv2_B Coatomer subunit epsilo 99.1 8.5E-09 2.9E-13 70.1 13.9 140 14-158 85-234 (310)
96 2vyi_A SGTA protein; chaperone 99.1 1.9E-08 6.5E-13 59.0 14.0 120 29-151 11-130 (131)
97 3rjv_A Putative SEL1 repeat pr 99.1 4E-08 1.4E-12 63.4 16.3 147 3-158 26-191 (212)
98 3q15_A PSP28, response regulat 99.0 5.9E-09 2E-13 72.8 12.3 154 3-158 190-359 (378)
99 2vsy_A XCC0866; transferase, g 99.0 2.4E-08 8.1E-13 73.4 15.8 125 3-130 31-158 (568)
100 2vyi_A SGTA protein; chaperone 99.0 1.6E-08 5.6E-13 59.3 12.5 111 3-116 20-130 (131)
101 2vgx_A Chaperone SYCD; alterna 99.0 4E-09 1.4E-13 64.4 9.9 110 16-128 8-117 (148)
102 4gco_A Protein STI-1; structur 99.0 4E-08 1.4E-12 58.3 14.1 102 3-107 21-122 (126)
103 2ifu_A Gamma-SNAP; membrane fu 99.0 5.6E-09 1.9E-13 71.1 11.4 155 3-158 44-218 (307)
104 4ga2_A E3 SUMO-protein ligase 99.0 9.6E-09 3.3E-13 62.8 11.4 109 3-115 39-149 (150)
105 3qky_A Outer membrane assembly 99.0 2E-08 6.9E-13 66.6 13.8 152 3-156 60-253 (261)
106 3ro2_A PINS homolog, G-protein 99.0 2.6E-09 8.9E-14 72.4 9.7 155 3-158 13-206 (338)
107 1p5q_A FKBP52, FK506-binding p 99.0 1.9E-08 6.3E-13 69.5 13.7 123 29-155 146-284 (336)
108 1p5q_A FKBP52, FK506-binding p 99.0 3.6E-08 1.2E-12 68.1 15.0 123 3-127 155-292 (336)
109 2lni_A Stress-induced-phosphop 99.0 2.3E-08 7.7E-13 59.0 12.1 109 3-114 24-132 (133)
110 3gyz_A Chaperone protein IPGC; 99.0 1E-08 3.5E-13 62.9 10.7 99 29-130 35-134 (151)
111 3sf4_A G-protein-signaling mod 99.0 5.3E-09 1.8E-13 72.9 10.4 155 3-158 17-210 (406)
112 4a1s_A PINS, partner of inscut 99.0 2.6E-09 8.8E-14 75.0 8.5 156 3-158 94-286 (411)
113 3urz_A Uncharacterized protein 99.0 6.4E-08 2.2E-12 62.2 14.5 132 3-141 62-196 (208)
114 4gcn_A Protein STI-1; structur 99.0 2.1E-08 7E-13 59.6 11.3 106 31-140 9-121 (127)
115 1hz4_A MALT regulatory protein 99.0 4E-08 1.4E-12 68.2 14.4 155 4-158 23-197 (373)
116 3sf4_A G-protein-signaling mod 99.0 2.2E-09 7.6E-14 74.8 7.6 148 11-158 163-330 (406)
117 3gyz_A Chaperone protein IPGC; 98.9 4.2E-08 1.4E-12 60.1 12.2 88 4-94 45-133 (151)
118 2fbn_A 70 kDa peptidylprolyl i 98.9 3.8E-09 1.3E-13 67.3 7.8 146 7-155 16-176 (198)
119 1elw_A TPR1-domain of HOP; HOP 98.9 3E-07 1E-11 52.8 15.3 109 29-140 3-111 (118)
120 3ro2_A PINS homolog, G-protein 98.9 2.7E-09 9.3E-14 72.3 7.2 148 11-158 159-326 (338)
121 2dba_A Smooth muscle cell asso 98.9 2E-07 6.8E-12 55.9 14.8 113 28-144 26-142 (148)
122 2xm6_A Protein corresponding t 98.9 4.6E-07 1.6E-11 65.4 19.1 13 9-21 93-105 (490)
123 2xm6_A Protein corresponding t 98.9 7.3E-07 2.5E-11 64.3 19.6 139 8-158 56-210 (490)
124 2kck_A TPR repeat; tetratricop 98.9 4.7E-08 1.6E-12 55.8 10.9 100 29-130 5-107 (112)
125 1elw_A TPR1-domain of HOP; HOP 98.9 2.2E-07 7.6E-12 53.3 13.5 102 3-107 12-113 (118)
126 1elr_A TPR2A-domain of HOP; HO 98.9 2.8E-08 9.5E-13 58.3 9.6 114 30-146 4-123 (131)
127 2c2l_A CHIP, carboxy terminus 98.9 6.2E-08 2.1E-12 65.2 12.4 89 3-94 12-101 (281)
128 2xcb_A PCRH, regulatory protei 98.9 4.2E-08 1.4E-12 59.2 10.4 98 29-128 17-114 (142)
129 3q49_B STIP1 homology and U bo 98.9 4.9E-07 1.7E-11 53.7 15.0 119 28-148 7-129 (137)
130 2kck_A TPR repeat; tetratricop 98.9 8.6E-08 2.9E-12 54.7 11.2 90 3-95 14-107 (112)
131 3sz7_A HSC70 cochaperone (SGT) 98.9 2.5E-07 8.5E-12 57.0 14.0 98 29-128 10-107 (164)
132 3rjv_A Putative SEL1 repeat pr 98.9 2.3E-07 7.9E-12 59.8 14.2 137 12-158 3-152 (212)
133 4f3v_A ESX-1 secretion system 98.9 8.1E-08 2.8E-12 64.6 12.2 134 3-141 110-247 (282)
134 3upv_A Heat shock protein STI1 98.9 2.2E-07 7.6E-12 54.6 13.0 97 30-128 4-100 (126)
135 1hz4_A MALT regulatory protein 98.9 1.6E-07 5.6E-12 65.2 14.3 156 3-158 101-276 (373)
136 1elr_A TPR2A-domain of HOP; HO 98.9 1.2E-07 4.3E-12 55.5 11.8 105 3-110 12-122 (131)
137 1wao_1 Serine/threonine protei 98.8 2.2E-08 7.5E-13 72.4 9.7 118 3-124 14-134 (477)
138 4g1t_A Interferon-induced prot 98.8 1.4E-07 4.7E-12 67.4 13.8 94 65-158 334-453 (472)
139 4gcn_A Protein STI-1; structur 98.8 1.4E-07 4.8E-12 55.9 11.7 98 3-105 16-121 (127)
140 2fbn_A 70 kDa peptidylprolyl i 98.8 2.1E-07 7.3E-12 59.1 13.1 124 3-128 46-185 (198)
141 3upv_A Heat shock protein STI1 98.8 2.8E-07 9.6E-12 54.2 12.8 89 3-94 12-101 (126)
142 4f3v_A ESX-1 secretion system 98.8 1.4E-07 4.9E-12 63.4 12.6 119 38-159 110-232 (282)
143 2xcb_A PCRH, regulatory protei 98.8 1.6E-07 5.4E-12 56.6 11.8 90 3-94 26-115 (142)
144 3sz7_A HSC70 cochaperone (SGT) 98.8 2.6E-07 9E-12 56.9 13.1 90 3-95 19-109 (164)
145 1hxi_A PEX5, peroxisome target 98.8 9.7E-08 3.3E-12 56.2 10.4 94 32-128 19-113 (121)
146 2r5s_A Uncharacterized protein 98.8 5.9E-08 2E-12 60.7 10.0 122 3-128 48-172 (176)
147 1xi4_A Clathrin heavy chain; a 98.8 2.8E-07 9.4E-12 73.5 15.5 112 29-158 1133-1244(1630)
148 2vgx_A Chaperone SYCD; alterna 98.8 1.9E-07 6.5E-12 56.9 11.8 89 3-94 29-118 (148)
149 2yhc_A BAMD, UPF0169 lipoprote 98.8 3E-07 1E-11 59.7 13.1 126 3-130 49-214 (225)
150 2e2e_A Formate-dependent nitri 98.8 6.3E-08 2.2E-12 60.4 9.2 115 41-158 21-138 (177)
151 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 1.9E-07 6.5E-12 67.1 12.6 122 30-155 268-405 (457)
152 3qou_A Protein YBBN; thioredox 98.8 2E-07 6.9E-12 62.9 12.0 127 27-158 114-242 (287)
153 2xev_A YBGF; tetratricopeptide 98.8 6.8E-07 2.3E-11 52.5 12.9 90 36-128 8-104 (129)
154 2ifu_A Gamma-SNAP; membrane fu 98.8 1.4E-07 4.9E-12 64.1 11.0 152 3-157 84-254 (307)
155 2xev_A YBGF; tetratricopeptide 98.8 1.4E-06 4.7E-11 51.1 14.1 90 3-95 10-106 (129)
156 3q49_B STIP1 homology and U bo 98.8 1.2E-06 4E-11 52.0 13.9 90 3-94 17-106 (137)
157 3u3w_A Transcriptional activat 98.8 8.9E-07 3E-11 59.7 14.7 124 35-158 80-219 (293)
158 3ro3_A PINS homolog, G-protein 98.7 1.1E-07 3.7E-12 57.7 9.2 128 31-158 10-152 (164)
159 2dba_A Smooth muscle cell asso 98.7 1.2E-06 4.1E-11 52.4 13.7 103 3-109 36-142 (148)
160 3gw4_A Uncharacterized protein 98.7 8.6E-08 2.9E-12 60.7 8.9 126 3-128 34-175 (203)
161 1xi4_A Clathrin heavy chain; a 98.7 7.7E-07 2.6E-11 71.0 15.6 116 29-159 1104-1219(1630)
162 1wao_1 Serine/threonine protei 98.7 8E-08 2.7E-12 69.4 9.4 120 35-158 11-133 (477)
163 3ro3_A PINS homolog, G-protein 98.7 8E-08 2.7E-12 58.3 8.2 126 3-128 17-157 (164)
164 2qfc_A PLCR protein; TPR, HTH, 98.7 4E-07 1.4E-11 61.4 12.0 124 4-127 124-264 (293)
165 4g1t_A Interferon-induced prot 98.7 1.1E-06 3.9E-11 62.6 14.7 148 7-158 225-395 (472)
166 1hxi_A PEX5, peroxisome target 98.7 5.8E-07 2E-11 52.8 10.9 89 3-94 25-114 (121)
167 4b4t_Q 26S proteasome regulato 98.7 1.5E-06 5.3E-11 61.3 15.0 156 3-158 12-198 (434)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 7.9E-07 2.7E-11 63.9 12.7 123 3-127 276-413 (457)
169 1ihg_A Cyclophilin 40; ppiase 98.7 9.8E-07 3.3E-11 61.8 12.9 124 31-156 224-362 (370)
170 3k9i_A BH0479 protein; putativ 98.6 1.6E-07 5.3E-12 54.7 7.4 87 7-94 2-90 (117)
171 3e4b_A ALGK; tetratricopeptide 98.6 5E-06 1.7E-10 59.6 16.3 136 10-158 194-345 (452)
172 3n71_A Histone lysine methyltr 98.6 7.2E-07 2.5E-11 64.6 11.8 125 4-128 318-463 (490)
173 1ihg_A Cyclophilin 40; ppiase 98.6 9.8E-07 3.3E-11 61.8 12.0 115 3-121 231-362 (370)
174 3k9i_A BH0479 protein; putativ 98.6 1.8E-07 6.1E-12 54.5 6.6 105 42-147 2-109 (117)
175 2c2l_A CHIP, carboxy terminus 98.6 2.4E-06 8.2E-11 57.4 12.8 97 29-128 3-100 (281)
176 3rkv_A Putative peptidylprolyl 98.6 1.3E-06 4.4E-11 53.7 10.2 99 30-129 11-126 (162)
177 4e6h_A MRNA 3'-END-processing 98.6 2E-06 6.9E-11 64.7 12.8 124 32-157 436-563 (679)
178 3e4b_A ALGK; tetratricopeptide 98.5 5.3E-06 1.8E-10 59.5 13.7 120 30-158 176-310 (452)
179 3rkv_A Putative peptidylprolyl 98.5 3.2E-06 1.1E-10 51.9 11.0 92 3-95 19-127 (162)
180 2if4_A ATFKBP42; FKBP-like, al 98.5 9.5E-07 3.2E-11 61.0 9.3 94 32-128 181-292 (338)
181 3dra_A Protein farnesyltransfe 98.5 1E-05 3.5E-10 55.2 13.8 147 9-158 124-281 (306)
182 2l6j_A TPR repeat-containing p 98.5 1.7E-06 5.9E-11 49.3 8.6 64 29-93 3-66 (111)
183 2hr2_A Hypothetical protein; a 98.5 6.8E-06 2.3E-10 50.5 11.1 109 31-141 12-148 (159)
184 4e6h_A MRNA 3'-END-processing 98.4 5.9E-06 2E-10 62.2 12.9 122 6-129 445-570 (679)
185 1klx_A Cysteine rich protein B 98.4 7.3E-06 2.5E-10 49.2 11.1 117 4-131 4-128 (138)
186 3n71_A Histone lysine methyltr 98.4 2.4E-06 8.4E-11 61.9 10.5 120 39-158 318-458 (490)
187 2hr2_A Hypothetical protein; a 98.4 6.4E-06 2.2E-10 50.7 10.7 91 3-93 19-130 (159)
188 2if4_A ATFKBP42; FKBP-like, al 98.4 8.5E-07 2.9E-11 61.3 7.3 123 3-129 187-328 (338)
189 4b4t_Q 26S proteasome regulato 98.4 1.4E-05 4.7E-10 56.4 13.0 157 2-158 62-239 (434)
190 2kat_A Uncharacterized protein 98.3 1.8E-05 6E-10 45.6 10.4 80 13-94 3-82 (115)
191 1zu2_A Mitochondrial import re 98.3 4.6E-06 1.6E-10 51.2 8.0 99 6-109 13-133 (158)
192 1na3_A Designed protein CTPR2; 98.2 5.2E-05 1.8E-09 41.3 10.1 79 30-110 9-87 (91)
193 2l6j_A TPR repeat-containing p 98.2 1.7E-05 6E-10 44.9 8.1 93 64-158 3-101 (111)
194 1na3_A Designed protein CTPR2; 98.2 5.8E-05 2E-09 41.1 9.8 82 65-148 9-90 (91)
195 2kat_A Uncharacterized protein 98.1 3.9E-05 1.3E-09 44.1 8.8 100 48-149 3-103 (115)
196 1klx_A Cysteine rich protein B 98.1 0.00018 6.1E-09 43.1 11.9 105 43-158 8-120 (138)
197 3dra_A Protein farnesyltransfe 98.1 0.00098 3.3E-08 45.5 17.0 137 10-150 84-235 (306)
198 1dce_A Protein (RAB geranylger 98.0 0.00059 2E-08 50.5 15.3 135 9-147 43-190 (567)
199 3qwp_A SET and MYND domain-con 97.9 0.00012 4.1E-09 52.3 10.4 91 37-127 294-398 (429)
200 2kc7_A BFR218_protein; tetratr 97.9 7.9E-05 2.7E-09 41.4 7.6 54 4-58 9-63 (99)
201 3qww_A SET and MYND domain-con 97.9 0.00014 4.7E-09 52.1 10.0 87 42-128 310-410 (433)
202 3ma5_A Tetratricopeptide repea 97.9 0.00013 4.4E-09 41.0 8.0 63 29-93 6-69 (100)
203 3ma5_A Tetratricopeptide repea 97.9 0.00026 8.8E-09 39.7 8.9 85 64-149 6-91 (100)
204 3qwp_A SET and MYND domain-con 97.8 0.00018 6.1E-09 51.4 9.8 91 3-93 295-399 (429)
205 2uy1_A Cleavage stimulation fa 97.8 0.0024 8.2E-08 46.4 15.7 79 77-158 298-377 (493)
206 3qww_A SET and MYND domain-con 97.8 0.00013 4.4E-09 52.2 8.9 86 8-93 311-410 (433)
207 3q7a_A Farnesyltransferase alp 97.8 0.0027 9.3E-08 44.1 15.0 147 7-157 66-230 (349)
208 1zu2_A Mitochondrial import re 97.8 0.00012 4.2E-09 44.9 7.4 103 41-148 13-137 (158)
209 1dce_A Protein (RAB geranylger 97.8 0.0009 3.1E-08 49.5 13.1 139 11-153 89-244 (567)
210 3mkq_A Coatomer beta'-subunit; 97.8 0.00094 3.2E-08 50.8 13.4 131 5-156 662-804 (814)
211 3dss_A Geranylgeranyl transfer 97.8 0.0041 1.4E-07 42.9 15.9 134 11-148 90-240 (331)
212 2uy1_A Cleavage stimulation fa 97.7 0.0029 9.9E-08 46.0 14.8 117 33-158 289-407 (493)
213 2kc7_A BFR218_protein; tetratr 97.7 0.0005 1.7E-08 38.0 8.7 58 36-95 6-65 (99)
214 3dss_A Geranylgeranyl transfer 97.6 0.0065 2.2E-07 41.9 15.2 138 7-148 41-192 (331)
215 3q7a_A Farnesyltransferase alp 97.6 0.0081 2.8E-07 41.7 16.8 140 7-150 100-257 (349)
216 3ly7_A Transcriptional activat 97.6 0.0047 1.6E-07 43.2 13.1 61 65-127 277-337 (372)
217 1pc2_A Mitochondria fission pr 97.4 0.0019 6.4E-08 39.3 8.4 81 11-93 14-99 (152)
218 3ly7_A Transcriptional activat 97.4 0.0038 1.3E-07 43.6 11.0 129 26-158 190-333 (372)
219 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0049 1.7E-07 34.8 8.8 63 31-93 6-74 (104)
220 3mkq_A Coatomer beta'-subunit; 97.2 0.0048 1.6E-07 47.0 10.4 102 41-157 663-771 (814)
221 3bee_A Putative YFRE protein; 97.1 0.0075 2.6E-07 33.4 8.5 66 28-95 4-73 (93)
222 1pc2_A Mitochondria fission pr 97.1 0.013 4.5E-07 35.6 10.1 82 46-129 14-100 (152)
223 3mkq_B Coatomer subunit alpha; 97.1 0.019 6.6E-07 35.8 13.0 101 4-125 14-114 (177)
224 3u64_A Protein TP_0956; tetrat 97.0 0.015 5.2E-07 39.3 10.5 112 29-142 153-284 (301)
225 3bee_A Putative YFRE protein; 97.0 0.0066 2.2E-07 33.6 7.4 49 11-60 25-73 (93)
226 3u64_A Protein TP_0956; tetrat 97.0 0.04 1.4E-06 37.3 12.0 95 10-106 178-283 (301)
227 1v54_E Cytochrome C oxidase po 96.9 0.019 6.7E-07 32.2 8.4 62 45-107 25-86 (109)
228 2ff4_A Probable regulatory pro 96.9 0.0053 1.8E-07 43.3 7.7 74 32-106 173-251 (388)
229 2v5f_A Prolyl 4-hydroxylase su 96.8 0.024 8.3E-07 31.8 9.5 65 64-128 4-74 (104)
230 4h7y_A Dual specificity protei 96.5 0.056 1.9E-06 32.8 10.9 115 28-145 11-138 (161)
231 2y69_E Cytochrome C oxidase su 96.5 0.043 1.5E-06 32.6 8.4 64 80-144 68-131 (152)
232 1v54_E Cytochrome C oxidase po 96.4 0.048 1.6E-06 30.7 9.2 69 75-144 19-88 (109)
233 4gns_B Protein CSD3, chitin bi 96.3 0.14 4.7E-06 39.3 12.5 121 6-127 259-398 (754)
234 1wy6_A Hypothetical protein ST 96.3 0.081 2.8E-06 31.7 13.6 119 5-132 17-157 (172)
235 2ff4_A Probable regulatory pro 96.1 0.072 2.5E-06 37.5 9.6 76 67-144 173-253 (388)
236 1nzn_A CGI-135 protein, fissio 96.1 0.066 2.3E-06 31.4 7.9 84 44-129 15-103 (126)
237 2y69_E Cytochrome C oxidase su 96.0 0.11 3.9E-06 30.8 9.2 66 42-108 64-130 (152)
238 4h7y_A Dual specificity protei 95.8 0.051 1.7E-06 33.0 6.6 93 64-158 12-117 (161)
239 4gns_B Protein CSD3, chitin bi 95.6 0.16 5.5E-06 39.0 10.0 124 32-158 250-394 (754)
240 3mkq_B Coatomer subunit alpha; 95.3 0.26 9E-06 30.7 11.2 104 37-156 12-123 (177)
241 1wy6_A Hypothetical protein ST 95.2 0.24 8.3E-06 29.7 9.7 86 6-97 72-157 (172)
242 4fhn_B Nucleoporin NUP120; pro 95.1 0.66 2.3E-05 37.4 12.6 142 5-154 822-990 (1139)
243 3txn_A 26S proteasome regulato 95.0 0.61 2.1E-05 33.0 12.6 155 2-158 26-204 (394)
244 1nzn_A CGI-135 protein, fissio 94.9 0.28 9.7E-06 28.7 8.4 87 71-158 7-97 (126)
245 4b4t_R RPN7, 26S proteasome re 94.9 0.62 2.1E-05 33.3 10.9 98 31-128 132-236 (429)
246 3ffl_A Anaphase-promoting comp 94.1 0.4 1.4E-05 29.6 7.2 99 35-133 25-155 (167)
247 2nsz_A Programmed cell death p 93.8 0.55 1.9E-05 27.6 8.0 21 2-22 14-34 (129)
248 2ion_A PDCD4, programmed cell 93.3 0.48 1.7E-05 28.7 6.7 59 2-61 16-76 (152)
249 4b4t_R RPN7, 26S proteasome re 93.2 1.5 5.3E-05 31.2 10.2 93 2-94 138-237 (429)
250 4fhn_B Nucleoporin NUP120; pro 93.2 1.5 5.3E-05 35.4 11.1 153 3-157 850-1042(1139)
251 2uwj_G Type III export protein 91.8 0.99 3.4E-05 25.3 7.8 77 11-95 22-98 (115)
252 1zbp_A Hypothetical protein VP 91.8 2 6.8E-05 28.7 14.0 113 3-128 5-128 (273)
253 3lpz_A GET4 (YOR164C homolog); 91.3 2.6 8.8E-05 29.2 14.8 84 40-123 65-159 (336)
254 3ffl_A Anaphase-promoting comp 91.2 0.6 2.1E-05 28.8 5.3 93 2-94 27-151 (167)
255 3txn_A 26S proteasome regulato 91.0 2.2 7.4E-05 30.3 8.6 92 35-126 104-207 (394)
256 2p58_C Putative type III secre 90.4 1.4 4.9E-05 24.7 9.3 77 11-95 23-99 (116)
257 3l6a_A Eukaryotic translation 89.5 2.2 7.6E-05 29.8 7.6 77 1-77 18-95 (364)
258 2xig_A Ferric uptake regulatio 89.0 2.5 8.4E-05 25.4 7.5 62 19-81 16-77 (150)
259 2fe3_A Peroxide operon regulat 89.0 2.2 7.5E-05 25.4 6.5 61 20-81 12-72 (145)
260 3o48_A Mitochondria fission 1 88.5 2.5 8.7E-05 25.0 9.8 66 63-128 38-106 (134)
261 1zbp_A Hypothetical protein VP 88.0 2.9 9.8E-05 28.0 6.9 110 37-157 4-122 (273)
262 3eiq_C Programmed cell death p 87.9 4 0.00014 28.5 7.9 66 33-99 220-287 (358)
263 2wpv_A GET4, UPF0363 protein Y 87.5 5.2 0.00018 27.4 12.3 85 39-123 62-157 (312)
264 1mzb_A Ferric uptake regulatio 87.2 2.2 7.5E-05 25.1 5.6 61 20-81 8-69 (136)
265 4b4t_P 26S proteasome regulato 87.0 6.8 0.00023 28.1 15.5 90 69-158 141-241 (445)
266 1mzb_A Ferric uptake regulatio 87.0 3.2 0.00011 24.4 6.4 60 91-151 9-69 (136)
267 2xig_A Ferric uptake regulatio 87.0 3.3 0.00011 24.9 6.4 62 89-151 16-77 (150)
268 2zu6_B Programmed cell death p 86.8 4.1 0.00014 27.8 7.4 20 3-22 174-193 (307)
269 2w57_A Ferric uptake regulatio 86.7 3.6 0.00012 24.7 6.6 61 90-151 7-68 (150)
270 3eyy_A Putative iron uptake re 86.3 2.2 7.5E-05 25.5 5.3 61 19-81 8-68 (145)
271 4ets_A Ferric uptake regulatio 86.1 2.4 8.2E-05 25.9 5.5 70 11-81 13-85 (162)
272 3eyy_A Putative iron uptake re 85.9 2.9 0.0001 24.9 5.8 61 89-151 8-68 (145)
273 2fe3_A Peroxide operon regulat 85.8 4 0.00014 24.3 7.4 62 89-151 11-72 (145)
274 2nsz_A Programmed cell death p 85.5 3.8 0.00013 23.9 7.3 68 32-100 9-78 (129)
275 3esl_A Checkpoint serine/threo 85.4 5.3 0.00018 25.4 9.5 59 79-137 93-152 (202)
276 4b4t_P 26S proteasome regulato 85.4 8.3 0.00028 27.7 13.8 149 8-158 29-200 (445)
277 2w57_A Ferric uptake regulatio 84.6 3 0.0001 25.0 5.4 62 19-81 6-68 (150)
278 2b7e_A PRE-mRNA processing pro 84.6 2.2 7.5E-05 21.3 3.9 33 47-79 3-36 (59)
279 3o48_A Mitochondria fission 1 84.5 4.5 0.00015 23.9 9.3 73 25-99 35-110 (134)
280 2ion_A PDCD4, programmed cell 84.0 5.2 0.00018 24.2 7.2 70 32-102 11-82 (152)
281 1y8m_A FIS1; mitochondria, unk 83.2 5.5 0.00019 23.9 11.0 66 63-128 37-105 (144)
282 4ets_A Ferric uptake regulatio 83.2 5.8 0.0002 24.2 6.3 60 91-151 24-85 (162)
283 2wvi_A Mitotic checkpoint seri 82.9 6.2 0.00021 24.2 6.8 55 83-137 78-133 (164)
284 3mwm_A ZUR, putative metal upt 82.9 2.1 7.3E-05 25.3 4.2 59 22-81 6-64 (139)
285 2fu4_A Ferric uptake regulatio 80.5 4.6 0.00016 21.1 5.5 58 21-79 8-66 (83)
286 2rg8_A Programmed cell death p 80.4 2.2 7.7E-05 26.2 3.7 21 2-22 17-37 (165)
287 1ug3_A EIF4GI, eukaryotic prot 80.4 4.6 0.00016 27.8 5.7 63 1-64 17-80 (339)
288 2fu4_A Ferric uptake regulatio 79.0 5.3 0.00018 20.9 6.6 61 90-151 7-68 (83)
289 2wpv_A GET4, UPF0363 protein Y 78.8 13 0.00045 25.4 13.9 23 65-87 134-156 (312)
290 1qsa_A Protein (soluble lytic 78.7 19 0.00065 27.2 10.3 116 9-128 228-347 (618)
291 4aez_C MAD3, mitotic spindle c 78.3 9.7 0.00033 24.7 6.2 55 82-136 131-186 (223)
292 3e3v_A Regulatory protein RECX 77.3 10 0.00036 23.4 8.3 50 47-97 50-99 (177)
293 2d2s_A Exocyst complex compone 77.1 13 0.00043 24.3 8.6 90 36-128 24-119 (235)
294 2o03_A Probable zinc uptake re 76.7 5.4 0.00018 23.2 4.5 51 31-81 11-61 (131)
295 2uwj_G Type III export protein 76.1 8.3 0.00028 21.7 5.9 85 45-138 21-105 (115)
296 4a1g_A Mitotic checkpoint seri 76.0 11 0.00036 22.9 7.0 54 47-100 82-136 (152)
297 2p58_C Putative type III secre 75.4 8.8 0.0003 21.6 6.9 85 45-138 22-106 (116)
298 1y8m_A FIS1; mitochondria, unk 74.7 11 0.00039 22.5 11.1 73 25-99 34-109 (144)
299 4a1g_A Mitotic checkpoint seri 74.6 12 0.0004 22.7 9.1 55 83-137 83-138 (152)
300 2wvi_A Mitotic checkpoint seri 73.6 13 0.00045 22.8 7.0 55 47-101 77-132 (164)
301 3lvg_A Clathrin heavy chain 1; 73.0 0.02 6.7E-07 41.8 -7.8 117 29-154 82-218 (624)
302 2d2s_A Exocyst complex compone 72.8 17 0.00057 23.7 10.2 89 2-93 25-119 (235)
303 2rg8_A Programmed cell death p 72.8 11 0.00037 23.1 5.2 59 33-93 13-73 (165)
304 3rjo_A Endoplasmic reticulum a 72.8 23 0.00077 25.1 14.1 87 2-95 204-297 (419)
305 3c1d_A Protein ORAA, regulator 72.2 14 0.00047 22.4 11.7 101 45-150 45-145 (159)
306 2o03_A Probable zinc uptake re 71.9 3.6 0.00012 23.9 2.9 44 2-45 17-60 (131)
307 3esl_A Checkpoint serine/threo 71.2 17 0.00059 23.1 8.9 67 32-99 82-149 (202)
308 1ug3_A EIF4GI, eukaryotic prot 70.7 14 0.00049 25.4 6.0 66 33-99 14-80 (339)
309 3mwm_A ZUR, putative metal upt 69.6 8.1 0.00028 22.8 4.1 47 105-151 18-64 (139)
310 4fke_A Aminopeptidase N; zinc 69.2 41 0.0014 26.7 12.7 86 3-93 694-786 (909)
311 2f6m_A Suppressor protein STP2 68.3 10 0.00034 19.3 4.6 46 67-113 4-49 (65)
312 4aez_C MAD3, mitotic spindle c 67.7 22 0.00076 23.0 6.8 53 47-99 131-184 (223)
313 3twr_A Tankyrase-2; ankyrin re 66.1 8.9 0.00031 22.6 3.9 108 4-124 14-129 (165)
314 3pvs_A Replication-associated 65.9 34 0.0012 24.6 9.7 38 113-150 268-305 (447)
315 3qye_A TBC1 domain family memb 65.7 25 0.00087 23.9 6.5 47 51-97 209-255 (331)
316 1k1a_A B-cell lymphoma 3-encod 65.4 15 0.00051 23.0 5.1 58 2-64 13-73 (241)
317 3ctd_A Putative ATPase, AAA fa 65.2 24 0.00084 22.6 9.4 21 79-99 49-69 (213)
318 3f3f_C Nucleoporin NUP85; stru 64.4 32 0.0011 25.7 7.0 70 83-154 499-568 (570)
319 1qsa_A Protein (soluble lytic 64.4 44 0.0015 25.3 11.0 111 44-158 228-342 (618)
320 3eiq_C Programmed cell death p 64.2 34 0.0012 23.9 7.4 64 68-132 220-285 (358)
321 3l6a_A Eukaryotic translation 64.1 34 0.0012 23.9 8.2 78 32-113 14-96 (364)
322 3bu8_A Telomeric repeat-bindin 63.0 28 0.00096 22.5 7.3 48 11-58 88-142 (235)
323 3jxi_A Vanilloid receptor-rela 62.0 4.3 0.00015 26.1 2.1 117 3-124 10-161 (260)
324 1bpo_A Protein (clathrin); cla 61.5 45 0.0015 24.4 12.5 112 8-124 342-453 (494)
325 2p22_A Suppressor protein STP2 61.4 22 0.00074 22.1 4.9 57 98-155 109-165 (174)
326 2zu6_B Programmed cell death p 60.3 37 0.0013 23.1 6.3 70 32-102 168-239 (307)
327 3bu8_A Telomeric repeat-bindin 60.2 20 0.0007 23.2 4.7 45 3-48 122-166 (235)
328 3aji_A 26S proteasome non-ATPa 59.4 24 0.00082 22.0 5.2 18 3-20 11-28 (231)
329 2p22_A Suppressor protein STP2 59.4 24 0.00081 21.9 4.8 56 63-119 109-164 (174)
330 2ijq_A Hypothetical protein; s 58.3 29 0.00099 21.2 7.7 53 76-128 43-103 (161)
331 4gq2_M Nucleoporin NUP120; bet 57.5 72 0.0025 25.5 10.5 48 102-149 899-950 (950)
332 4ady_A RPN2, 26S proteasome re 57.5 74 0.0025 25.7 8.9 17 42-58 536-552 (963)
333 3bqo_A Telomeric repeat-bindin 56.9 14 0.00047 23.6 3.5 48 11-58 94-145 (211)
334 2etb_A Transient receptor pote 56.8 12 0.00041 24.0 3.5 117 3-124 7-157 (256)
335 3f3f_C Nucleoporin NUP85; stru 56.1 52 0.0018 24.7 6.8 88 31-120 480-569 (570)
336 3hzj_A Rabgap1L, RAB GTPase-ac 55.9 44 0.0015 22.5 6.8 73 51-124 175-251 (310)
337 2ijq_A Hypothetical protein; s 55.4 33 0.0011 21.0 8.0 60 33-93 36-103 (161)
338 3lvg_A Clathrin heavy chain 1; 55.3 1.7 6E-05 32.1 -0.8 114 30-158 54-167 (624)
339 3ygs_P Procaspase 9; apoptosis 55.2 24 0.00082 19.3 7.0 38 79-120 51-88 (97)
340 3pvs_A Replication-associated 54.7 57 0.0019 23.5 13.7 103 11-115 167-305 (447)
341 2yru_A Steroid receptor RNA ac 54.5 29 0.00098 20.0 5.8 45 49-93 45-89 (118)
342 1bd8_A P19INK4D CDK4/6 inhibit 53.6 13 0.00046 21.5 3.1 111 3-125 7-123 (156)
343 2rfa_A Transient receptor pote 53.3 38 0.0013 21.0 6.1 82 41-128 129-222 (232)
344 3d5l_A Regulatory protein RECX 53.1 42 0.0014 21.5 11.1 103 45-150 91-194 (221)
345 3kae_A CDC27, possible protein 53.0 40 0.0014 21.2 6.7 87 32-125 34-139 (242)
346 4b4t_S RPN3, 26S proteasome re 50.9 73 0.0025 23.6 11.3 65 30-94 231-299 (523)
347 3v30_A DNA-binding protein rfx 50.4 19 0.00066 21.2 3.5 113 2-124 6-123 (172)
348 2qq8_A TBC1 domain family memb 50.2 34 0.0012 23.4 5.0 40 89-128 217-256 (334)
349 2qfz_A TBC1 domain family memb 50.1 36 0.0012 23.3 5.2 113 11-127 188-313 (345)
350 4b4t_O 26S proteasome regulato 50.0 64 0.0022 22.7 8.1 84 72-155 83-189 (393)
351 3b2a_A TON_1937, putative unch 49.9 40 0.0014 22.4 4.9 114 13-132 94-222 (265)
352 3r88_A Anthranilate phosphorib 49.8 65 0.0022 22.7 6.7 63 65-128 23-87 (377)
353 3f6q_A Integrin-linked protein 49.5 39 0.0013 20.1 5.2 112 3-124 10-126 (179)
354 3lxu_X Tripeptidyl-peptidase 2 48.7 1.2E+02 0.0042 25.6 12.6 79 69-149 1238-1331(1354)
355 1q02_A Sequestosome 1; helical 48.7 22 0.00077 17.1 3.8 36 51-88 12-47 (52)
356 3dfg_A Xcrecx, regulatory prot 48.5 43 0.0015 20.2 12.9 100 46-150 48-147 (162)
357 2i2x_B MTAC, methyltransferase 47.9 29 0.00097 22.8 4.2 63 16-79 14-85 (258)
358 3hzj_A Rabgap1L, RAB GTPase-ac 47.7 61 0.0021 21.8 8.0 84 45-132 130-221 (310)
359 2qq8_A TBC1 domain family memb 47.5 26 0.00089 24.0 4.1 76 51-126 214-292 (334)
360 1oai_A Nuclear RNA export fact 47.2 25 0.00087 17.3 3.0 23 42-64 32-54 (59)
361 3kea_A K1L; tropism, ANK repea 45.9 25 0.00086 23.1 3.8 13 107-119 133-145 (285)
362 3qye_A TBC1 domain family memb 45.9 68 0.0023 21.8 7.8 47 16-62 209-255 (331)
363 3lxu_X Tripeptidyl-peptidase 2 45.8 1.4E+02 0.0047 25.3 9.0 79 33-114 1237-1331(1354)
364 3qil_A Clathrin heavy chain 1; 45.6 43 0.0015 19.4 4.1 52 33-87 35-86 (125)
365 1k1a_A B-cell lymphoma 3-encod 45.2 53 0.0018 20.4 6.4 85 37-126 13-102 (241)
366 3t5v_B Nuclear mRNA export pro 45.1 86 0.0029 22.8 6.9 63 32-94 178-249 (455)
367 4g8k_A 2-5A-dependent ribonucl 45.1 64 0.0022 21.5 5.8 15 4-18 174-188 (337)
368 3kae_A CDC27, possible protein 45.0 56 0.0019 20.6 6.4 107 41-158 13-137 (242)
369 1q2z_A ATP-dependent DNA helic 44.4 8.8 0.0003 22.1 1.2 51 44-97 41-95 (120)
370 2pnn_A Transient receptor pote 43.6 25 0.00085 22.7 3.4 117 3-124 18-169 (273)
371 1wgl_A TOLL-interacting protei 43.2 31 0.001 17.0 4.7 21 43-63 36-56 (59)
372 3utm_A Tankyrase-1; tankyrase, 42.4 33 0.0011 22.8 4.0 108 4-124 30-145 (351)
373 2dzn_A Probable 26S proteasome 42.2 14 0.00047 23.0 2.0 18 3-20 7-24 (228)
374 4f52_E Glomulin; cullin-ring E 41.8 1.1E+02 0.0036 23.2 6.7 35 21-55 18-53 (596)
375 1zl8_A LIN-7; heterodimer, alp 41.0 31 0.0011 16.5 3.5 21 79-99 7-27 (53)
376 3hra_A Ankyrin repeat family p 40.9 55 0.0019 19.7 4.6 144 3-157 44-197 (201)
377 1uzc_A Hypothetical protein FL 40.5 38 0.0013 17.4 3.7 33 46-78 14-46 (71)
378 1s3q_A Ferritin; ferroxidase, 40.1 22 0.00076 21.8 2.6 61 66-128 101-161 (173)
379 2xdt_A Endoplasmic reticulum a 39.5 1.4E+02 0.0049 23.7 15.1 85 3-94 688-779 (897)
380 2dod_A Transcription elongatio 39.2 44 0.0015 17.8 3.9 33 46-78 16-48 (82)
381 3eu9_A Huntingtin-interacting 38.4 69 0.0024 19.7 5.7 46 4-53 15-62 (240)
382 3se6_A Endoplasmic reticulum a 37.4 1.6E+02 0.0056 23.7 15.1 88 3-95 756-848 (967)
383 2qfz_A TBC1 domain family memb 37.0 99 0.0034 21.1 7.9 72 87-158 231-309 (345)
384 2dzn_A Probable 26S proteasome 36.8 43 0.0015 20.6 3.7 47 107-157 111-159 (228)
385 1dp3_A TRAM protein; helix-loo 36.7 12 0.0004 18.3 0.7 33 46-78 12-44 (55)
386 1eum_A Ferritin 1; ECFTNA, met 36.6 17 0.00058 22.0 1.7 14 68-81 101-114 (165)
387 3m6y_A 4-hydroxy-2-oxoglutarat 36.4 80 0.0027 20.9 4.7 63 29-91 195-267 (275)
388 1bpo_A Protein (clathrin); cla 35.3 1.3E+02 0.0045 22.1 9.0 116 3-128 369-484 (494)
389 3m0z_A Putative aldolase; MCSG 34.7 79 0.0027 20.7 4.4 63 29-91 172-244 (249)
390 3t8k_A Uncharacterized protein 34.6 78 0.0027 19.2 8.5 126 4-134 12-148 (186)
391 3ibx_A TENA, HP1287, putative 34.3 89 0.003 19.8 8.9 51 101-151 160-210 (221)
392 2cos_A Serine/threonine protei 34.2 44 0.0015 16.2 3.3 36 87-127 12-49 (54)
393 2fv2_A RCD1 required for cell 34.1 65 0.0022 21.5 4.1 53 73-125 181-234 (268)
394 3ltj_A Alpharep-4; protein eng 33.9 80 0.0027 19.1 12.5 80 28-115 57-136 (201)
395 2r9g_A AAA ATPase, central reg 33.4 94 0.0032 19.8 10.1 55 41-96 25-84 (204)
396 2i2x_B MTAC, methyltransferase 33.2 32 0.0011 22.6 2.7 61 49-110 12-81 (258)
397 1rw2_A ATP-dependent DNA helic 32.5 11 0.00039 22.7 0.4 50 44-96 72-125 (152)
398 2es9_A Putative cytoplasmic pr 32.4 65 0.0022 17.6 3.7 18 11-28 13-30 (115)
399 2p1h_A APAF-1, apoptotic prote 32.3 61 0.0021 17.3 7.4 34 79-116 50-83 (94)
400 1awc_B Protein (GA binding pro 30.8 78 0.0027 18.1 5.6 109 4-124 8-121 (153)
401 1e5r_A Proline oxidase; oxidor 30.7 1.3E+02 0.0043 20.4 5.1 19 99-117 245-263 (290)
402 2crb_A Nuclear receptor bindin 30.6 71 0.0024 17.6 4.5 26 32-57 17-42 (97)
403 4gt9_A TS, tsase, thymidylate 30.5 62 0.0021 21.0 3.6 17 47-63 139-155 (232)
404 2ko4_A Mediator of RNA polymer 30.3 66 0.0022 17.0 3.3 32 60-91 31-62 (81)
405 1x87_A Urocanase protein; stru 30.0 30 0.001 25.4 2.2 45 9-66 212-256 (551)
406 3bge_A Predicted ATPase; struc 29.9 1.1E+02 0.0037 19.5 8.5 56 41-96 18-78 (201)
407 2eab_A Alpha-fucosidase; glyco 29.8 2E+02 0.0068 23.1 6.8 36 30-65 722-757 (899)
408 3no6_A Transcriptional activat 29.1 1.2E+02 0.0042 19.7 9.6 22 28-49 127-149 (248)
409 1ixm_A SPO0B, protein (sporula 29.0 56 0.0019 20.4 3.1 24 105-128 37-60 (192)
410 2fkn_A Urocanate hydratase; ro 28.9 31 0.0011 25.4 2.1 45 9-66 213-257 (552)
411 1uwk_A Urocanate hydratase; hy 28.8 32 0.0011 25.3 2.2 46 9-67 217-262 (557)
412 1fkm_A Protein (GYP1P), ORF YO 28.3 62 0.0021 22.8 3.6 81 11-95 175-261 (396)
413 4fke_A Aminopeptidase N; zinc 28.3 2.3E+02 0.0078 22.6 14.0 93 32-129 688-787 (909)
414 3ltm_A Alpha-REP4; protein eng 27.9 1.1E+02 0.0036 18.7 13.3 17 29-45 63-79 (211)
415 3us6_A Histidine-containing ph 27.5 1E+02 0.0035 18.4 6.4 80 9-94 37-122 (153)
416 1wdy_A 2-5A-dependent ribonucl 26.9 1.2E+02 0.0042 19.1 5.6 109 3-124 10-126 (285)
417 3ljn_A Hypothetical protein; a 26.6 1.5E+02 0.0051 20.0 5.2 11 6-16 28-38 (364)
418 2rpa_A Katanin P60 ATPase-cont 26.5 77 0.0027 16.7 3.1 26 33-58 15-40 (78)
419 3v31_A Ankyrin repeat family A 26.4 99 0.0034 17.8 5.6 112 2-124 7-123 (167)
420 3hgl_A Effector protein hopab2 25.8 82 0.0028 16.7 2.9 19 86-104 51-69 (85)
421 3ph0_C ASCG; type III secretio 25.7 69 0.0023 15.8 4.6 10 75-84 50-59 (61)
422 1wty_A Hypothetical protein TT 25.4 98 0.0033 17.4 7.2 76 10-92 3-79 (119)
423 3t5v_B Nuclear mRNA export pro 25.3 2E+02 0.0067 20.9 5.9 58 67-124 178-244 (455)
424 3lpz_A GET4 (YOR164C homolog); 25.3 1.7E+02 0.0059 20.3 15.5 69 20-88 84-159 (336)
425 3cqc_A Nuclear pore complex pr 25.1 71 0.0024 21.3 3.2 27 32-58 36-62 (270)
426 3bvf_A Ferritin; iron storage, 24.8 16 0.00055 22.6 0.1 17 47-63 66-82 (181)
427 2y1l_E Darpin-8.4; hydrolase-i 24.8 1.1E+02 0.0037 17.8 4.9 106 5-124 21-134 (169)
428 3c1d_A Protein ORAA, regulator 24.8 1.2E+02 0.004 18.2 11.6 100 10-114 45-144 (159)
429 3rjo_A Endoplasmic reticulum a 24.6 1.9E+02 0.0064 20.4 14.9 93 31-130 198-297 (419)
430 3vu7_H DNA repair protein REV1 24.4 1.1E+02 0.0038 17.7 5.8 12 76-87 71-82 (124)
431 4b8b_A General negative regula 24.2 2.4E+02 0.0081 21.5 10.5 59 5-63 459-526 (603)
432 1jvr_A HTLV-II MA, MA, human T 23.7 1.1E+02 0.0038 17.5 5.7 66 29-95 21-92 (137)
433 3ezx_A MMCP 1, monomethylamine 23.6 59 0.002 20.7 2.5 42 4-45 11-52 (215)
434 1vlg_A Ferritin; TM1128, struc 23.5 46 0.0016 20.3 2.0 17 47-63 66-82 (176)
435 4b8b_A General negative regula 23.2 2.5E+02 0.0085 21.4 7.9 55 44-98 463-526 (603)
436 4fn6_A Thiaminase-2, thiaminas 23.1 1.5E+02 0.0052 18.9 10.2 11 101-111 158-168 (229)
437 4ewi_A Nacht, LRR and PYD doma 23.0 63 0.0021 18.3 2.3 28 100-127 68-95 (113)
438 2bn5_A PSI; nuclear protein, s 22.9 58 0.002 13.9 2.8 22 106-127 8-29 (33)
439 4fjo_A DNA repair protein REV1 22.7 1E+02 0.0036 16.8 6.2 46 11-56 11-59 (97)
440 2jab_A H10-2-G3; HER2, darpin, 22.6 1.1E+02 0.0037 17.0 4.6 80 36-124 17-101 (136)
441 2hm2_Q ASC2, pyrin-only protei 22.4 68 0.0023 17.1 2.3 28 101-128 51-78 (89)
442 4hl4_A TBC1 domain family memb 22.3 1.8E+02 0.0061 19.3 5.1 43 87-130 190-233 (292)
443 1krq_A Ferritin; H-chain like 22.1 20 0.00068 21.8 0.1 14 47-60 52-65 (167)
444 3ezx_A MMCP 1, monomethylamine 21.6 1.2E+02 0.0042 19.2 3.7 40 41-80 13-52 (215)
445 3k1s_A PTS system, cellobiose- 21.6 1.2E+02 0.0041 17.1 5.8 18 5-22 32-49 (109)
446 4ady_A RPN2, 26S proteasome re 21.4 3.3E+02 0.011 22.1 11.7 116 7-127 536-656 (963)
447 3ctd_A Putative ATPase, AAA fa 20.9 1.8E+02 0.006 18.7 9.0 66 32-97 34-107 (213)
448 2f8y_A Notch homolog 1, transl 20.7 1.5E+02 0.0052 18.0 4.8 14 4-17 31-44 (223)
449 2qcx_A Transcriptional activat 20.5 1.9E+02 0.0065 19.0 8.7 23 27-49 133-155 (263)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.1e-39 Score=230.88 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=153.4
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHhHhcCCCCChhhHHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD---------MESVMHVMRKLDELAISPDYNTFHILI 72 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~~~~~ll 72 (159)
|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. .+.|.++|++|.+.|+.||..||++||
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 78999999999999999999999999999999999999998765 678999999999999999999999999
Q ss_pred HHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHH
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLK 152 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (159)
.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|...|+.||..||+.+|.+|++.|+++
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhC
Q 039637 153 DAYIVVK 159 (159)
Q Consensus 153 ~A~~~~~ 159 (159)
+|.++|+
T Consensus 193 ~A~~ll~ 199 (501)
T 4g26_A 193 KVYKTLQ 199 (501)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999873
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.4e-34 Score=206.03 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=142.5
Q ss_pred ChhHHHhcCC---------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHH
Q 039637 1 MISAFCRSGC---------FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHIL 71 (159)
Q Consensus 1 ll~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 71 (159)
||++|++.+. +++|.++|++|.+.|+.||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 67 Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 67 LLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp HHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 3566766544 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|++.+..|+..||+.++.+++..+.
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a 225 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVA 225 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987543
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=173.44 Aligned_cols=128 Identities=8% Similarity=0.054 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhH---hcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLD---ELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSL 106 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (159)
..+||++|++||+.|+.++|.++|.+|. ..|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998765 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 107 IFHLGKMRA-HSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 107 i~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
|.++++.|+ .++|.++|++|...|+.||..+|+.++..+.+.+-++...++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999998 478999999999999999999999998888888777766554
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.93 E-value=5.3e-26 Score=171.72 Aligned_cols=122 Identities=11% Similarity=0.184 Sum_probs=110.2
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc
Q 039637 1 MISAFCRSGCFEETKQLAGDFEA---KYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK 77 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 77 (159)
||++||+.|++++|.++|+.|.+ .|+.||+.+||+||++||+.|++++|.++|++|.+.|+.||..||++||+++|+
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK 212 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence 58999999999999999988764 589999999999999999999999999999999999999999999999999999
Q ss_pred cCh-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 039637 78 EKM-YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV 122 (159)
Q Consensus 78 ~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (159)
.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+-++...++
T Consensus 213 ~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 213 QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred CCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 997 578999999999999999999999999877666544444333
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.82 E-value=1.1e-18 Score=127.96 Aligned_cols=154 Identities=9% Similarity=-0.053 Sum_probs=119.8
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
...|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|..+..+|.+.|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 45677888888888888887765443 67788888888888888888888888887643 24667888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCcHHHHh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSMC--KALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~ 155 (159)
++|.++|+++.+.. +.++.+|+.++..|.+.|++++|..+|+++... +..|+ ..+|..+..+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888888887754 346778888888888888888888888877654 55666 678888888888888888887
Q ss_pred hhh
Q 039637 156 IVV 158 (159)
Q Consensus 156 ~~~ 158 (159)
+.|
T Consensus 537 ~~~ 539 (597)
T 2xpi_A 537 DAL 539 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.82 E-value=1.3e-18 Score=127.71 Aligned_cols=155 Identities=10% Similarity=-0.013 Sum_probs=139.8
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
+..|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|+.+..++.+.|++
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 56789999999999999999987654 88999999999999999999999999999864 34688999999999999999
Q ss_pred HHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 82 MLAYRTMVDMHRK----GHQPE--EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 82 ~~a~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|..+|+++...+ +.+..+|..+..+|.+.|++++|.
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999876 66787 7899999999999999999999999988654 557899999999999999999999
Q ss_pred hhhC
Q 039637 156 IVVK 159 (159)
Q Consensus 156 ~~~~ 159 (159)
+.|+
T Consensus 571 ~~~~ 574 (597)
T 2xpi_A 571 THLH 574 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 7
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=2.4e-14 Score=93.16 Aligned_cols=150 Identities=11% Similarity=0.056 Sum_probs=109.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHcc---
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKE--- 78 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~--- 78 (159)
..+.+.|++++|...|+...+..+. +...|..+...+.+.|++++|+..|++..+. .|+ ...+..+..++...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~ 89 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSEAYVALYRQ 89 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhhhh
Confidence 3566778888888888887776554 6777888888888888888888888887774 343 46666777777777
Q ss_pred --------ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 79 --------KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 79 --------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
|++++|+..+++..+.. +-+...+..+...|...|++++|...|++..... .+...+..+...|...|+
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 90 AEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC
T ss_pred hhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCC
Confidence 88888888887777653 2355667777777777788888888777776655 566677777777777777
Q ss_pred HHHHhhhh
Q 039637 151 LKDAYIVV 158 (159)
Q Consensus 151 ~~~A~~~~ 158 (159)
+++|...|
T Consensus 167 ~~~A~~~~ 174 (217)
T 2pl2_A 167 LDEALAQY 174 (217)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.66 E-value=1.7e-14 Score=100.88 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=105.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 83 (159)
+...|++++|.+.|++..+..+. +..++..+...+.+.|++++|.+.|+++.+. .| +..+|..+..++.+.|++++
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 34445555555555555444332 5667777777777888888888888777764 34 35677777778888888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
|.+.++++.+.. +.+..++..+...+.+.|++++|...++++... .+.+..++..+...|.+.|++++|...|
T Consensus 290 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 290 AEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888877653 456777778888888888888888888877753 3445677788888888888888887765
No 9
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=7.6e-14 Score=88.12 Aligned_cols=153 Identities=14% Similarity=0.024 Sum_probs=132.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..|.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|++++|...+.+..... ..+...+..+...+...++++
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 90 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQ 90 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHH
Confidence 4678899999999999999988766 88999999999999999999999999988753 234566777778899999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
.+...+.+..+.. +.+...+..+...|.+.|++++|...|++..... +.+..++..+...|.+.|++++|...|+
T Consensus 91 ~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 91 AAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999988764 3467888999999999999999999999888643 4567889999999999999999998763
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=5.2e-14 Score=92.81 Aligned_cols=153 Identities=11% Similarity=-0.067 Sum_probs=101.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~ 81 (159)
..|...|++++|.+.|++..+..+. +...+..+...+...|++++|.+.++++.+.+..| +...+..+..++...|++
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 157 (252)
T 2ho1_A 79 VVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP 157 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH
Confidence 3456667777777777776665443 56667777777777777777777777766633334 345566666677777777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++|.+++.+..+.. +.+...+..+...|...|++++|...++..... .+.+...+..+...+.+.|+.++|.+.+
T Consensus 158 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 158 AQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 77777777766653 234566667777777777777777777776642 3345566667777777777777776654
No 11
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=6.1e-14 Score=90.63 Aligned_cols=153 Identities=8% Similarity=-0.060 Sum_probs=117.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc-ChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE-KMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~ 81 (159)
..+...|++++|.+.|+...+..+. +...|..+...+...|++++|.+.+++..+.. ..+..++..+...+... |++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcH
Confidence 4567788888888888888776544 67788888888888888888888888887753 23466777788888888 888
Q ss_pred HHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++|...++++.+.+..| +...+..+...+...|++++|...++++.... +.+...+..+...+.+.|++++|...+
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888733333 35677778888888888888888888777532 335677788888888888888888765
No 12
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.4e-14 Score=94.28 Aligned_cols=151 Identities=13% Similarity=0.021 Sum_probs=123.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHhHhcCCCCC-hhhHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRT-----------GDMESVMHVMRKLDELAISPD-YNTFHI 70 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~-~~~~~~ 70 (159)
..+.+.|++++|.+.|++..+..+. +...|..+..++.+. |++++|...|++..+. .|+ ...+..
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~ 123 (217)
T 2pl2_A 47 RTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQ 123 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 4678899999999999999987765 788999999999999 9999999999999984 464 677888
Q ss_pred HHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 71 LIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
+-.++...|++++|+..+++..+.. .++..+..+...|...|++++|...|++.... .|.+...+..+...+.+.|+
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccC
Confidence 8899999999999999999999887 68889999999999999999999999998864 34467888999999999999
Q ss_pred HHHHhhhhC
Q 039637 151 LKDAYIVVK 159 (159)
Q Consensus 151 ~~~A~~~~~ 159 (159)
+++|...|+
T Consensus 201 ~~~A~~~~~ 209 (217)
T 2pl2_A 201 AEEAARAAA 209 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999998764
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.65 E-value=3.2e-14 Score=99.52 Aligned_cols=148 Identities=11% Similarity=-0.048 Sum_probs=91.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a 84 (159)
.+.|++++|.+.|+++.+.++. +...|..+...+...|++++|...|.+..+. .|+ ..++..+..++.+.|++++|
T Consensus 180 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 180 NAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 3334444444444444433322 3334444444444444444444444444442 233 56666777777788888888
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+.++++.+.. +.++.++..+...+.+.|++++|...|+++... .+.+..++..+...+.+.|++++|...+
T Consensus 257 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 257 IDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888877653 235667777888888888888888888877753 3556777788888888888888887665
No 14
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=5.8e-14 Score=88.02 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=131.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.|+...+..+. +...+..+...+...|++++|...+++..+.. ..+...+..+...+...|+++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 93 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYD 93 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHH
Confidence 4577889999999999988876544 78899999999999999999999999998853 235678888899999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|.+.+++..+.. +.+...+..+...+...|++++|...+++..... +.+..++..+...+.+.|++++|...+
T Consensus 94 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 94 LAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998764 4577888899999999999999999999887643 456788999999999999999998876
No 15
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=5.9e-14 Score=92.53 Aligned_cols=153 Identities=10% Similarity=0.050 Sum_probs=131.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.|+...+..+. +...+..+...+.+.|++++|.+.|++..+.. ..+...+..+...+...|+++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHH
Confidence 4678899999999999999877654 78899999999999999999999999998853 235678888999999999999
Q ss_pred HHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|.++++++.+.+..| +...+..+...+.+.|++++|...+++..... +.+..++..+...+.+.|++++|...+
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998743344 56788889999999999999999999888643 346788899999999999999998876
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=1.3e-13 Score=90.20 Aligned_cols=152 Identities=10% Similarity=-0.035 Sum_probs=116.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.|+...+..+. +..++..+...+...|++++|...+++..+.. ..+...+..+...+...|+++
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPK 142 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHH
Confidence 4567778888888888887766544 67788888888888888888888888887753 235667777778888888888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|...+++..+.. +.+...+..+...+.+.|++++|...+++.... .+.+..++..+...|.+.|++++|...+
T Consensus 143 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 143 LALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8888888887653 345667778888888888888888888877653 2345677788888888888888887765
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.61 E-value=1.1e-13 Score=98.29 Aligned_cols=152 Identities=10% Similarity=-0.017 Sum_probs=100.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+.+.|++++|.++|+.+.+..+. +..+|..+..++.+.|++++|...|.++.+.+ +.+..++..+..++.+.|+++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 4567778888888888777765443 67777777777777888888888877777653 123566677777777777777
Q ss_pred HHHHHHHHHHHcCCCCcH---HHHHHH------------HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039637 83 LAYRTMVDMHRKGHQPEE---ELCSSL------------IFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (159)
+|.+.|+++.+.. +.+. ..+..+ ...+.+.|++++|...|+++... .+.+..++..+..+|.+
T Consensus 112 ~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 112 EAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHH
Confidence 7777777777643 1223 344433 33366667777777777766642 23355566666666777
Q ss_pred cCcHHHHhhhh
Q 039637 148 GKLLKDAYIVV 158 (159)
Q Consensus 148 ~g~~~~A~~~~ 158 (159)
.|++++|...|
T Consensus 190 ~g~~~~A~~~~ 200 (450)
T 2y4t_A 190 EGEPRKAISDL 200 (450)
T ss_dssp TTCGGGGHHHH
T ss_pred CCCHHHHHHHH
Confidence 77766666554
No 18
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=3.1e-13 Score=87.30 Aligned_cols=154 Identities=9% Similarity=-0.116 Sum_probs=131.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRT-GDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKM 80 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 80 (159)
..|...|++++|.+.|+...+..+. +..++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|+
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 5678899999999999999877654 788999999999999 999999999999988433343 5778888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+++|...+.++.+.. +.+...+..+...+.+.|++++|...++.........+...+..+...+...|+.++|..++
T Consensus 129 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999998764 34578889999999999999999999998876433256778888889999999999988765
No 19
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.60 E-value=7.5e-14 Score=99.13 Aligned_cols=152 Identities=11% Similarity=-0.089 Sum_probs=130.7
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh----hhHHHH------
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY----NTFHIL------ 71 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l------ 71 (159)
...|...|++++|.+.|+.+.+.++. +..+|..+...|.+.|++++|...|+++.+. .|+. ..+..+
T Consensus 67 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 67 ATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH
Confidence 35688899999999999999987765 7899999999999999999999999999884 4553 455555
Q ss_pred ------HHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039637 72 ------IKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145 (159)
Q Consensus 72 ------l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (159)
...+...|++++|..+++++.+.. +.+..++..+..+|.+.|++++|..+|+++... .+.+..++..+...|
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 344889999999999999999764 457788999999999999999999999998763 345688999999999
Q ss_pred HhcCcHHHHhhhh
Q 039637 146 ISGKLLKDAYIVV 158 (159)
Q Consensus 146 ~~~g~~~~A~~~~ 158 (159)
...|++++|...|
T Consensus 222 ~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 222 YQLGDHELSLSEV 234 (450)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 9999999999876
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.60 E-value=1.9e-13 Score=92.71 Aligned_cols=147 Identities=8% Similarity=0.041 Sum_probs=88.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
..+...++.++|.+.++.+...+..| +...+..+..++.+.|++++|++.+++ ..+...+..+...+.+.|++
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCH
Confidence 34566677777777777766554323 455555666666677777777766665 24556666666666677777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELC---SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++|.+.++++.+.. |+.... ..++..+...|++++|..+|+++... .+.+..+++.+..++.+.|++++|...|
T Consensus 147 ~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 147 DLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777776666543 332111 12233334446677777777666653 3445666666666677777777666654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.59 E-value=7.7e-14 Score=96.77 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 99 EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++.++..+...|.+.|++++|...|++.... .+.+..++..+...|.+.|++++|...|
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455566666666666666666666655542 2334555666666666666666665544
No 22
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=1.6e-13 Score=89.83 Aligned_cols=152 Identities=14% Similarity=0.060 Sum_probs=123.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.|+...+..+. +...+..+...+.+.|++++|...+++..+.. ..+...+..+...+...|+++
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp -----------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHH
Confidence 4567889999999999999886654 78899999999999999999999999998853 235678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|.+.+++..+.. +.+...+..+...+.+.|++++|...+++.... .+.+...+..+...+.+.|++++|...|
T Consensus 109 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 109 EAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998864 346778889999999999999999999988764 3446778899999999999999998876
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.2e-13 Score=89.74 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=75.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHHHhcCChHHHHHHHHHhHhcC-----------------
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKY--D----VVLLNSMLCAYCRTGDMESVMHVMRKLDELA----------------- 60 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----------------- 60 (159)
.|...|++++|.+.|+...+..+.. + ..+|..+...+.+.|++++|...|++..+..
T Consensus 47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELK 126 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHH
Confidence 3444555555555555544332110 1 3455555555555555555555555555421
Q ss_pred -------CCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 039637 61 -------ISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS 132 (159)
Q Consensus 61 -------~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 132 (159)
..| +...+..+...+...|++++|...+++..+.. +.+..++..+...|.+.|++++|...+++..... +
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~ 204 (258)
T 3uq3_A 127 KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-P 204 (258)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-H
Confidence 111 12334444455555555555555555555432 2244455555555555555555555555554322 2
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 133 MCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+..++..+...+.+.|++++|...|
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 23445555555555555555555543
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.57 E-value=7.6e-13 Score=91.58 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 100 EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
..++..+...|.+.|++++|...|++.... .+.+..++..+...+.+.|++++|...|
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445555556666666666666666555442 2223455555555666666666555543
No 25
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=2.8e-13 Score=101.97 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=133.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 81 (159)
..|.+.|++++|.+.|++..+..+. +..+|+.+..+|.+.|++++|+..|++..+. .|+ ...|..+-.++...|++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~ 93 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQDV 93 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 4678899999999999999987665 7899999999999999999999999999984 565 68899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++|++.|++.++.. +-+..++..+...|.+.|++++|...|++..+.. +-+...+..+...|...|++++|.+.+
T Consensus 94 ~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 94 QGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 99999999999864 3467899999999999999999999999888643 346788999999999999999998765
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.56 E-value=1.9e-12 Score=89.63 Aligned_cols=153 Identities=10% Similarity=-0.050 Sum_probs=96.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC---------------------
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI--------------------- 61 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--------------------- 61 (159)
..|.+.|++++|.+.|+...+..+. +..++..+...+...|++++|...+.++.+...
T Consensus 106 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 106 TTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred HHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence 3455666666666666666655433 556666666666666666666666666665321
Q ss_pred --------------------------CC---ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 039637 62 --------------------------SP---DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (159)
Q Consensus 62 --------------------------~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (159)
.| +..++..+...+...|++++|...+++..+.. +.+..++..+...+.+
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLAN 263 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 01 23455566666777777777777777766543 2345666777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 113 MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 113 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.|++++|...|++.... .+.+..++..+...|.+.|++++|...|
T Consensus 264 ~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 264 GNQSEEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777766643 2334566677777777777777776654
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.55 E-value=4.1e-13 Score=91.30 Aligned_cols=152 Identities=12% Similarity=0.029 Sum_probs=131.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
+...|++++|.+.++...+..+. +..++..+...+.+.|++++|...+.+..+.. +.+..++..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 67789999999999999887655 78999999999999999999999999998853 23467888999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCcHHH
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM-----------CKALHEKILHILISGKLLKD 153 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~ 153 (159)
...+++..+.. +.+..++..+...|.+.|++++|...+++........ +..++..+..++.+.|+.++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 99999998764 3467889999999999999999999999887533221 46788999999999999999
Q ss_pred HhhhhC
Q 039637 154 AYIVVK 159 (159)
Q Consensus 154 A~~~~~ 159 (159)
|..+++
T Consensus 305 A~~~~~ 310 (327)
T 3cv0_A 305 VELTYA 310 (327)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 998764
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=4.2e-13 Score=88.34 Aligned_cols=153 Identities=12% Similarity=-0.020 Sum_probs=116.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC--CCC----hhhHHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI--SPD----YNTFHILIKYFC 76 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~ll~~~~ 76 (159)
..+...|++++|.+.|+...+.. ......++.- .++...|++++|...+.+..+..- .|+ ..++..+..++.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH-KDITYLNNRA-AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHH-HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 46778899999999999887666 4344444442 346788899999999988877421 111 477888888899
Q ss_pred ccChHHHHHHHHHHHHHcC------------------------CC-CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 039637 77 KEKMYMLAYRTMVDMHRKG------------------------HQ-PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR 131 (159)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g------------------------~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 131 (159)
..|++++|...+++..+.. .. .+...+..+...+...|++++|...+++.....
T Consensus 91 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 169 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA- 169 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 9999999999998888732 12 345677888888899999999999999887633
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 132 SMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+.+..++..+...|.+.|++++|...|
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 446778888999999999999998765
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.54 E-value=1.6e-12 Score=88.45 Aligned_cols=152 Identities=11% Similarity=-0.024 Sum_probs=107.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
..+...|++++|.+.++.+.+..+. +...|..+...+...| ++++|...|.+..+.. +.+...|..+...+...|++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCH
Confidence 3456667777777777777665543 5667777777777777 7778888887777642 12356677777777888888
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++|...+++..+.. +.+...+..+...|...|++++|...+++.... .+.+..++..+...+.+.|++++|...+
T Consensus 142 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 142 DQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp HHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHH
Confidence 88888887777654 224456666777788888888888888877753 3445677778888888888888887765
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.54 E-value=5.9e-13 Score=90.62 Aligned_cols=150 Identities=13% Similarity=-0.055 Sum_probs=64.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
+...|++++|.+.|+...+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence 33444444444444444433322 22333334444444444444444444444321 11234444444444444555555
Q ss_pred HHHHHHHHHcC--------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 85 YRTMVDMHRKG--------HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 85 ~~~~~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
...+++..+.. .+.+..++..+...|.+.|++++|...+++..... +.+..++..+...+.+.|++++|.+
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHH
Confidence 44444444321 01123344444444555555555555554444321 1233344444455555555555544
Q ss_pred h
Q 039637 157 V 157 (159)
Q Consensus 157 ~ 157 (159)
.
T Consensus 292 ~ 292 (330)
T 3hym_B 292 Y 292 (330)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.54 E-value=2.7e-13 Score=94.05 Aligned_cols=152 Identities=8% Similarity=0.000 Sum_probs=122.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+.+.|++++|.+.|+.+.+..+. +..+|..+...+.+.|++++|...|++..+.. +.+..++..+..++...|+++
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHH
Confidence 4678899999999999999987665 88999999999999999999999999999853 234788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCc-----------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCc
Q 039637 83 LAYRTMVDMHRKGHQPE-----------EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS-MCKALHEKILHILISGKL 150 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 150 (159)
+|...++++.+.. |+ ...+..+...+.+.|++++|...++++...... ++..++..+...|.+.|+
T Consensus 151 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 151 DACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC
Confidence 9999999998753 22 223344588999999999999999988864322 268899999999999999
Q ss_pred HHHHhhhh
Q 039637 151 LKDAYIVV 158 (159)
Q Consensus 151 ~~~A~~~~ 158 (159)
+++|.+.|
T Consensus 229 ~~~A~~~~ 236 (365)
T 4eqf_A 229 FNRAIDAF 236 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.53 E-value=1.7e-12 Score=88.12 Aligned_cols=146 Identities=8% Similarity=-0.035 Sum_probs=119.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHH---HHHHHHHccC
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFH---ILIKYFCKEK 79 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~~ 79 (159)
..+.+.|++++|++.++. +.+...+..+...+.+.|++++|...|+++.+. .|+....+ ..+..+...|
T Consensus 109 ~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~ 180 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGE 180 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCch
Confidence 567889999999999876 357889999999999999999999999999986 36643222 2334445569
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHH-Hhhhh
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKD-AYIVV 158 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~ 158 (159)
++++|..+|+++.+. .+.++..++.+..++.+.|++++|...|++.... .+-+..++..++..+...|+.++ +.+++
T Consensus 181 ~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 181 KLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp HHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999987 4568889999999999999999999999998864 34577888999999999999876 44443
No 33
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.53 E-value=2.8e-12 Score=88.06 Aligned_cols=87 Identities=7% Similarity=-0.047 Sum_probs=44.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~ 82 (159)
.+.+.|++++|.+.|+...+..+. +..+|..+...+...|++++|...|++..+. .| +...+..+..++...|+++
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCChH
Confidence 344555555555555555544333 4455555555555555555555555555543 12 2344444555555555555
Q ss_pred HHHHHHHHHHH
Q 039637 83 LAYRTMVDMHR 93 (159)
Q Consensus 83 ~a~~~~~~m~~ 93 (159)
+|...+++..+
T Consensus 89 ~A~~~~~~~~~ 99 (359)
T 3ieg_A 89 EAEDDFKKVLK 99 (359)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 55555555544
No 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.52 E-value=2.8e-12 Score=88.09 Aligned_cols=151 Identities=12% Similarity=-0.075 Sum_probs=130.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC---C-hhhHHHH-------
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP---D-YNTFHIL------- 71 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~-~~~~~~l------- 71 (159)
..+...|++++|.+.|+...+..+. +...|..+...+.+.|++++|...|++..+. .| + ...+..+
T Consensus 45 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 45 TVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHH
Confidence 4678899999999999999887654 7789999999999999999999999999884 46 3 4444444
Q ss_pred -----HHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039637 72 -----IKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (159)
Q Consensus 72 -----l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (159)
...+...|++++|.++++++.+.. +.+...+..+...+...|++++|...+++.... .+.+..++..+...+.
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 477889999999999999999864 357788999999999999999999999999864 4557889999999999
Q ss_pred hcCcHHHHhhhh
Q 039637 147 SGKLLKDAYIVV 158 (159)
Q Consensus 147 ~~g~~~~A~~~~ 158 (159)
..|++++|...|
T Consensus 200 ~~~~~~~A~~~~ 211 (359)
T 3ieg_A 200 QLGDHELSLSEV 211 (359)
T ss_dssp HHTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 999999999876
No 35
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=9.8e-13 Score=94.84 Aligned_cols=152 Identities=14% Similarity=0.014 Sum_probs=123.1
Q ss_pred hHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc---
Q 039637 3 SAFCRSGCF-EETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE--- 78 (159)
Q Consensus 3 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--- 78 (159)
..|...|++ ++|.+.|++..+..+. +...|..+...|.+.|++++|...|++..+. .|+...+..+..++...
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~ 186 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTD 186 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCS
T ss_pred HHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccC
Confidence 356677888 9999999888877654 6788899999999999999999999888874 57777888888888888
Q ss_pred ------ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 039637 79 ------KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKM--------RAHSEALSVYNMLRYSKRS--MCKALHEKIL 142 (159)
Q Consensus 79 ------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 142 (159)
|++++|++.+++..+.. +-+...+..+..+|... |++++|...|++....... -+...|..+.
T Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 187 SGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA 265 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence 89999999998888764 34677888888888888 8899999999888764210 4677888888
Q ss_pred HHHHhcCcHHHHhhhh
Q 039637 143 HILISGKLLKDAYIVV 158 (159)
Q Consensus 143 ~~~~~~g~~~~A~~~~ 158 (159)
..|...|++++|.+.|
T Consensus 266 ~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 266 TLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 9999999999888765
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.51 E-value=1.5e-12 Score=88.46 Aligned_cols=52 Identities=6% Similarity=-0.049 Sum_probs=23.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLD 57 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 57 (159)
+.+.|++++|.+.|+...+..+. +..++..+...+...|++++|...+++..
T Consensus 65 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 116 (327)
T 3cv0_A 65 QAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAWL 116 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444443322 34444444444444444444444444443
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=3.1e-12 Score=85.09 Aligned_cols=153 Identities=9% Similarity=0.012 Sum_probs=123.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC--hhhHHHHHHHHHccCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKM 80 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~ 80 (159)
..+...|++++|.+.|+...+..+. +...+..+...+.+.|++++|...+++..+..-.|+ ...|..+...+...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 4678899999999999999887654 666888899999999999999999999988432222 2237888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+++|.+.+++..+.. +.+..++..+...|...|++++|...|++.... .+.+..++..+...+...+++++|.+.|
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998864 346678999999999999999999999988864 3445667777773444455999988765
No 38
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.49 E-value=6.6e-12 Score=74.45 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=95.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.++|+.+.+.++. +...+..+...+...|++++|...++++.+.+ ..+...+..+...+...|+++
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHH
Confidence 4567788888888888888766544 67778888888888888888888888887753 234566777788888888888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
+|.++++++.+.. +.+...+..+...+.+.|++++|...++++..
T Consensus 87 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 87 EAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 8888888887754 33566777788888888888888888887764
No 39
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=9.4e-12 Score=81.03 Aligned_cols=145 Identities=6% Similarity=-0.129 Sum_probs=120.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 81 (159)
..+.+.|++++|.+.|+...+..+.++...+..+..++.+.|++++|+..|++..+. .|+ ...+..+..++...|++
T Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~ 92 (228)
T 4i17_A 15 NDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNN 92 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccH
Confidence 457789999999999999998876568888888999999999999999999999874 454 57788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCcH
Q 039637 82 MLAYRTMVDMHRKGHQPEE-------ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM--CKALHEKILHILISGKLL 151 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 151 (159)
++|...+++..+.. +.+. ..|..+...+...|++++|...|++..... +. +...+..+...|...|+.
T Consensus 93 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 93 QEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHHHHHH
Confidence 99999999998764 2244 457788888999999999999999998642 22 356778888888888877
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=1.3e-11 Score=81.99 Aligned_cols=117 Identities=10% Similarity=0.021 Sum_probs=56.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 83 (159)
.+...|++++|.+.|+...+..+. +..+|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++
T Consensus 52 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~ 129 (275)
T 1xnf_A 52 LYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKL 129 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHH
Confidence 344555555555555555544332 45555555555555555555555555555431 1124445555555555555555
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (159)
|...++++.+.. |+.......+..+...|++++|...++
T Consensus 130 A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 130 AQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555555432 222222222333333444555544443
No 41
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.44 E-value=2.2e-11 Score=72.14 Aligned_cols=125 Identities=14% Similarity=0.028 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (159)
..|..+...+...|++++|..++.++.+.. ..+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 357788899999999999999999998754 2356778888899999999999999999998764 34677888899999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 111 GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 111 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
...|++++|.+.++.+.... +.+..++..+...+.+.|++++|...+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 99999999999999888643 446778889999999999999998876
No 42
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.9e-12 Score=90.98 Aligned_cols=151 Identities=8% Similarity=-0.086 Sum_probs=131.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.|+...+..+. ...|..+...+...|++++|...+++..+.. ..+...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 4678899999999999999887655 8899999999999999999999999998753 235678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|...+.+..+.. +.+...+..+...|...|++++|...++++.... +.+..++..+...+.+.|++++|...+
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 3467788999999999999999999999988643 335678899999999999999998876
No 43
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=6.3e-12 Score=84.85 Aligned_cols=157 Identities=11% Similarity=0.067 Sum_probs=125.9
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc------CCCC-Chhh
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAK-------YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL------AISP-DYNT 67 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~ 67 (159)
...+...|++++|.++|+...+. .......++..+...|...|++++|...+.+..+. +-.| ...+
T Consensus 34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 113 (311)
T 3nf1_A 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT 113 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 35678899999999999998763 23335678899999999999999999999998864 2223 3567
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHc------CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------CCCC-
Q 039637 68 FHILIKYFCKEKMYMLAYRTMVDMHRK------GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS------KRSM- 133 (159)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~- 133 (159)
+..+...+...|++++|...+.+..+. +..| ....+..+...|...|++++|..++++.... +..|
T Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 193 (311)
T 3nf1_A 114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 788889999999999999999998864 2223 4567788999999999999999999987653 2122
Q ss_pred CHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 134 CKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
...++..+...|.+.|++++|.+.+
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~ 218 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLY 218 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3457888999999999999999876
No 44
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.43 E-value=1.6e-12 Score=86.49 Aligned_cols=157 Identities=12% Similarity=0.059 Sum_probs=124.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc------CCCC-ChhhH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK------YD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL------AISP-DYNTF 68 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~ 68 (159)
..|...|++++|.+.|+...+. +. +....++..+...|...|++++|.+.|.+..+. .-.| ...++
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 130 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQL 130 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4678899999999999987754 22 224668999999999999999999999998864 1123 35778
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHc------CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------------
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHRK------GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS------------ 129 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------ 129 (159)
..+...+...|++++|..++++..+. +..| ...++..+...|.+.|++++|...+++....
T Consensus 131 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 210 (283)
T 3edt_B 131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGD 210 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchh
Confidence 88899999999999999999998865 2223 4567888999999999999999999877642
Q ss_pred ------------------------------------CCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 130 ------------------------------------KRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 130 ------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
..+....++..+...|.+.|++++|...|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 211 NKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp CCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 112234567889999999999999998763
No 45
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=6.2e-12 Score=84.87 Aligned_cols=157 Identities=11% Similarity=0.059 Sum_probs=125.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc------CCCC-ChhhH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK------Y-DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL------AISP-DYNTF 68 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~ 68 (159)
..|...|++++|.+.|++..+. + ......++..+...+...|++++|...+.+..+. +-.| ....+
T Consensus 77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4678889999999999988754 2 2234678899999999999999999999998874 2223 34667
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHc------CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------------
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHRK------GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS------------ 129 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------ 129 (159)
..+...+...|++++|.+++++..+. +..| ...++..+...|...|++++|...+++....
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 78889999999999999999998864 2233 3557888999999999999999999987742
Q ss_pred ------------------------------------CCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 130 ------------------------------------KRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 130 ------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
..+....++..+...|.+.|++++|.+.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 123345678889999999999999998763
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=1.2e-10 Score=77.72 Aligned_cols=143 Identities=13% Similarity=0.004 Sum_probs=78.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc--
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK-- 77 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-- 77 (159)
.|...|++++|.+.|+...+. -+...+..+...|.. .+++++|...|++..+.+ +...+..+-..+..
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~ 88 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQ 88 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCC
Confidence 344556666666666655541 234455555555665 666666666666655543 44555555555555
Q ss_pred --cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 039637 78 --EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS---- 147 (159)
Q Consensus 78 --~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 147 (159)
.+++++|.+++++..+.+ ++..+..+...|.. .+++++|...|++....+ +...+..+...|..
T Consensus 89 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 89 GVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCC
Confidence 566666666666555543 34455555555555 566666666665555433 33444455555555
Q ss_pred cCcHHHHhhhh
Q 039637 148 GKLLKDAYIVV 158 (159)
Q Consensus 148 ~g~~~~A~~~~ 158 (159)
.+++++|...|
T Consensus 163 ~~~~~~A~~~~ 173 (273)
T 1ouv_A 163 PKDLKKALASY 173 (273)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 55555555443
No 47
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.42 E-value=1.7e-11 Score=88.75 Aligned_cols=151 Identities=9% Similarity=-0.045 Sum_probs=130.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.|+...+.. |+...|..+...+.+.|++++|...|.+..+.. +.+..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 35677899999999999998864 457889999999999999999999999998853 235778889999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|...+++..+.. +.+...+..+...|...|++++|...++++.... +.+..++..+...+.+.|++++|...|
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999864 3356788999999999999999999999988643 445678899999999999999999876
No 48
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=6.2e-11 Score=80.78 Aligned_cols=153 Identities=12% Similarity=-0.002 Sum_probs=112.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHH-HccCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVV-LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYF-CKEKM 80 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~ 80 (159)
..+.+.|++++|.++|++..+..+. +.. +|..+...+.+.|++++|..+|++..+.. .++...|....... ...|+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC
T ss_pred HHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC
Confidence 3456778888898888888875443 333 78888888888888888888888888743 12333443332222 23688
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-RSM--CKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
+++|..+|++..+.. +-++..|..++..+.+.|++++|..+|++..... .+| +...|..++..+.+.|+.++|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 889999988887653 3367788888888999999999999999888752 344 467888888888999999888876
Q ss_pred h
Q 039637 158 V 158 (159)
Q Consensus 158 ~ 158 (159)
+
T Consensus 264 ~ 264 (308)
T 2ond_A 264 E 264 (308)
T ss_dssp H
T ss_pred H
Confidence 5
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=1.3e-11 Score=82.12 Aligned_cols=150 Identities=11% Similarity=-0.094 Sum_probs=122.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDK---YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
+...|++++|.+.|+.+.+.... .+..+|..+...+...|++++|...|++..+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34568999999999999876432 246789999999999999999999999999853 23578899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++|.+.+++..+.. +.+..++..+...|.+.|++++|...|+++.... |+..........+...|++++|...+
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999864 3467889999999999999999999999988643 33333444555667778888888765
No 50
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.42 E-value=2.3e-13 Score=96.32 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=44.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 83 (159)
.+...|++++|...++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|++++
T Consensus 70 ~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 70 AANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 444455555555554444432 2344555555556666666655555553 2455566666666666666666
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
|..+|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|..
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHH
Confidence 66666544 25666666666666666666666655 145566666666666666666643
No 51
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.42 E-value=7.7e-12 Score=89.94 Aligned_cols=153 Identities=5% Similarity=-0.004 Sum_probs=115.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..|...|++++|.+.|+...+..+. +...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHH
Confidence 4567778888888888888776554 66778888888888888888888888887742 234567777888888888888
Q ss_pred HHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 039637 83 LAYRTMVDMHRKGHQ-PE----EELCSSLIFHLGK---MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (159)
+|...++++.+.... ++ ..++..+...+.. .|++++|...++...... +.+..++..+...|.+.|++++|
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 888888887754211 11 3377788888888 888888888888877533 34567778888888888888888
Q ss_pred hhhh
Q 039637 155 YIVV 158 (159)
Q Consensus 155 ~~~~ 158 (159)
...|
T Consensus 469 ~~~~ 472 (514)
T 2gw1_A 469 ITLF 472 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 52
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.41 E-value=4.7e-11 Score=79.35 Aligned_cols=154 Identities=8% Similarity=-0.051 Sum_probs=120.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-CCC-hhhHHHHHHHHHc
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYD---VVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPD-YNTFHILIKYFCK 77 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~-~~~~~~ll~~~~~ 77 (159)
..+.+.|++++|.+.|+.+.+..+. + ...+..+..+|.+.|++++|...|++..+..- .|. ...+..+..++..
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~ 101 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK 101 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence 4577899999999999999987654 3 67889999999999999999999999998531 112 3456677778888
Q ss_pred --------cChHHHHHHHHHHHHHcCCCCcHHHH-----------------HHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 039637 78 --------EKMYMLAYRTMVDMHRKGHQPEEELC-----------------SSLIFHLGKMRAHSEALSVYNMLRYSKRS 132 (159)
Q Consensus 78 --------~~~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 132 (159)
.|++++|...|++..+... -+.... ..+...|.+.|++++|...|+.+......
T Consensus 102 ~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 102 LSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp HCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 9999999999999997632 222333 45688899999999999999988764321
Q ss_pred -C-CHHHHHHHHHHHHhc----------CcHHHHhhhh
Q 039637 133 -M-CKALHEKILHILISG----------KLLKDAYIVV 158 (159)
Q Consensus 133 -~-~~~~~~~l~~~~~~~----------g~~~~A~~~~ 158 (159)
+ ....+..+..+|.+. |++++|...|
T Consensus 181 ~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 181 TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 1 345677888888866 8889998776
No 53
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=7.7e-11 Score=80.32 Aligned_cols=144 Identities=8% Similarity=0.001 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh-h-hHHHHHHHHHccChHHHHHHH
Q 039637 11 FEETKQLAGDFEAK-YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY-N-TFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 11 ~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~-~~~~ll~~~~~~~~~~~a~~~ 87 (159)
.++|..+|++..+. .+. +...|..++..+.+.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+
T Consensus 80 ~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 80 SDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 39999999999873 443 778999999999999999999999999998 45653 3 789999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 88 MVDMHRKGHQPEEELCSSLIFHLG-KMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
|++..+.. +.+...|........ ..|+.++|..+|++.... .+-+...+..++..+.+.|+.++|..+|+
T Consensus 157 ~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 157 FKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999864 234555544433322 369999999999988763 23467889999999999999999998873
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=2.3e-10 Score=76.41 Aligned_cols=139 Identities=10% Similarity=-0.016 Sum_probs=86.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc----cC
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK----EK 79 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~ 79 (159)
.+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+-..|.. .+
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 666777777776666543 55666666666666 667777777776666643 45556666666666 66
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcH
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS----GKLL 151 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 151 (159)
++++|..++++..+.+ +...+..+...|.. .+++++|...|++....+ +...+..+...|.. .+++
T Consensus 129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 6777777766666654 34455555555655 666666666666665542 33455566666666 6666
Q ss_pred HHHhhhh
Q 039637 152 KDAYIVV 158 (159)
Q Consensus 152 ~~A~~~~ 158 (159)
++|...|
T Consensus 203 ~~A~~~~ 209 (273)
T 1ouv_A 203 KEALARY 209 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 55
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.39 E-value=7.5e-12 Score=78.64 Aligned_cols=152 Identities=9% Similarity=0.024 Sum_probs=117.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHH-HHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY-FCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~ 81 (159)
..+.+.|++++|...|+...+..+. +...+..+...+.+.|++++|...|++.... .|+...+...... +...+..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhccc
Confidence 4578899999999999988776554 7889999999999999999999999998764 3443333222111 1222233
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM-CKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.++...+++..+.. +-++..+..+...+...|++++|...|+++......+ +...+..+...+...|+.++|...|
T Consensus 91 ~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 91 SPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp CHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred chHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 45788888888753 3367888899999999999999999999998755433 3567889999999999999998765
No 56
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.37 E-value=4.9e-12 Score=89.60 Aligned_cols=132 Identities=8% Similarity=0.039 Sum_probs=88.4
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|...|.++ ..|..+..++.+.|+
T Consensus 100 Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 100 LIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 163 (449)
T ss_dssp ---------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhcc
Confidence 3568899999999988873 367789999999999999999999999976 489999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
+++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|..+++
T Consensus 164 yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 164 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999988 267899999999999999999966554422 233345578899999999999987763
No 57
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.4e-10 Score=72.31 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=107.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.++...+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|+++
T Consensus 50 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 50 IAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHH
Confidence 4678899999999999999877554 78899999999999999999999999998853 345678888889999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
+|.+++++..+.. +.+...+..+...+...|++++|...++....
T Consensus 128 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 128 EAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999998864 34678899999999999999999999998764
No 58
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.35 E-value=1e-10 Score=84.60 Aligned_cols=153 Identities=6% Similarity=-0.007 Sum_probs=95.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.|+...+..+. +...|..+...+.+.|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence 3455666677777777666655443 45566666666677777777777776666542 223456666666677777777
Q ss_pred HHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039637 83 LAYRTMVDMHRKGH-----QPEEELCSSLIFHLGKM----------RAHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (159)
Q Consensus 83 ~a~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (159)
+|...+++..+... ......+......+.+. |++++|...|++.... .+.+..++..+...|.+
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 77777766654320 01111233334555555 7777777777766653 23456778888888888
Q ss_pred cCcHHHHhhhh
Q 039637 148 GKLLKDAYIVV 158 (159)
Q Consensus 148 ~g~~~~A~~~~ 158 (159)
.|++++|.+.|
T Consensus 475 ~g~~~~A~~~~ 485 (537)
T 3fp2_A 475 MEKIDEAIELF 485 (537)
T ss_dssp TTCHHHHHHHH
T ss_pred hccHHHHHHHH
Confidence 88888888765
No 59
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.35 E-value=7.4e-11 Score=86.65 Aligned_cols=146 Identities=11% Similarity=-0.063 Sum_probs=108.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHH
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYR 86 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~ 86 (159)
.|++++|.+.|++..+..+. +...|..+...+.+.|++++|.+.|++..+. .| +...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999988876554 6889999999999999999999999999884 45 46788888899999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CcHHHHhhhh
Q 039637 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG---KLLKDAYIVV 158 (159)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~ 158 (159)
.+++..+.. +.+...+..+...|.+.|++++|...+++..... +.+...+..+...+... |+.++|.+.+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 999998864 3467788899999999999999999999887643 34677888999999999 9999998765
No 60
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.34 E-value=1.1e-11 Score=76.04 Aligned_cols=143 Identities=8% Similarity=-0.098 Sum_probs=113.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~ 81 (159)
..+...|++++|++.+.......+. +...+-.+...|.+.|++++|.+.|++..+. .| +..+|..+-.++...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 3456678999999999887754332 4556678899999999999999999999984 45 468889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSV-YNMLRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
++|+..|++..+.. +-++.++..+...|.+.|+.++|.+. +++.... .|-+..+|......+.+.|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCc
Confidence 99999999999864 33678899999999999999877665 5776653 23467778777777777764
No 61
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=2.5e-11 Score=80.67 Aligned_cols=153 Identities=10% Similarity=-0.008 Sum_probs=118.7
Q ss_pred HhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc------CCCC-ChhhHHHH
Q 039637 6 CRSGCFEETKQLAGDFEA-------KYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL------AISP-DYNTFHIL 71 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~l 71 (159)
...|++++|.+.|++..+ ...+....++..+...|...|++++|...+.+..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 455777777777776543 222335678999999999999999999999998864 2223 35678889
Q ss_pred HHHHHccChHHHHHHHHHHHHHc------CC-CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------C-CCCCHHH
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHRK------GH-QPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS------K-RSMCKAL 137 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 137 (159)
..++...|++++|...+.+..+. .. +....++..+...|...|++++|...+++.... + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 21 234668889999999999999999999987753 1 2223567
Q ss_pred HHHHHHHHHhcCcHHHHhhhh
Q 039637 138 HEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 138 ~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+..+...|.+.|++++|...+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 888999999999999999876
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=8.2e-11 Score=84.85 Aligned_cols=152 Identities=9% Similarity=0.015 Sum_probs=130.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHhHhcCCCCChhhHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRT---------GDMESVMHVMRKLDELAISPDYNTFHILIK 73 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 73 (159)
..|.+.|++++|.+.|+...+.. |+...+..+...+... |++++|...|++..+.. ..+...|..+..
T Consensus 145 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 221 (474)
T 4abn_A 145 EVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGN 221 (474)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56788999999999999998865 5578999999999999 99999999999999853 234678888999
Q ss_pred HHHcc--------ChHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 039637 74 YFCKE--------KMYMLAYRTMVDMHRKGHQ--PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILH 143 (159)
Q Consensus 74 ~~~~~--------~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (159)
++... |++++|++.|++..+.... -+...+..+...|...|++++|...|++..... +.+...+..+..
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~ 300 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 99998 9999999999999986310 378899999999999999999999999887643 346778889999
Q ss_pred HHHhcCcHHHHhhhh
Q 039637 144 ILISGKLLKDAYIVV 158 (159)
Q Consensus 144 ~~~~~g~~~~A~~~~ 158 (159)
.+...|++++|.+.+
T Consensus 301 ~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 301 LLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998654
No 63
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.34 E-value=3.9e-10 Score=73.47 Aligned_cols=152 Identities=9% Similarity=0.037 Sum_probs=115.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh----hHHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDK-Y-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN----TFHILIKYFC 76 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~ 76 (159)
..+.+.|++++|.+.|+.+.+..+. | ....+..+..++.+.|++++|...|++..+. .|+.. .+..+..++.
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHHH
Confidence 4578899999999999999876554 2 2467888999999999999999999999885 35432 3444444444
Q ss_pred c------------------cChHHHHHHHHHHHHHcCCCCc-HHHH-----------------HHHHHHHHccCCHHHHH
Q 039637 77 K------------------EKMYMLAYRTMVDMHRKGHQPE-EELC-----------------SSLIFHLGKMRAHSEAL 120 (159)
Q Consensus 77 ~------------------~~~~~~a~~~~~~m~~~g~~~~-~~~~-----------------~~li~~~~~~g~~~~a~ 120 (159)
. .|++++|...|+++.+.. |+ .... ..+...|.+.|++++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 167 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVV 167 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 3 679999999999999753 33 2222 24566788999999999
Q ss_pred HHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 121 SVYNMLRYSKRS-M-CKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 121 ~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
..|+++...... | ....+..+..+|.+.|+.++|.+.+
T Consensus 168 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 168 NRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999998864221 1 1356888999999999999998876
No 64
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.33 E-value=5.9e-11 Score=76.55 Aligned_cols=149 Identities=9% Similarity=-0.076 Sum_probs=108.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHhHhcCCCC-Chh
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNS----------------MLCAYCRTGDMESVMHVMRKLDELAISP-DYN 66 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~ 66 (159)
.+.+.|++++|.+.|+...+..+. +...|.. +..+|.+.|++++|...|++..+. .| +..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 89 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVD 89 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHH
Confidence 467889999999999999876544 5566766 899999999999999999999885 45 467
Q ss_pred hHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039637 67 TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA--HSEALSVYNMLRYSKRSMCKALHEKILHI 144 (159)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (159)
.+..+..++...|++++|...|++..+.. +-++.++..+...|...|. .+.+...++.... .+|....+...-.+
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHH
Confidence 88889999999999999999999999864 3467788888777766553 3344455554432 22222233344455
Q ss_pred HHhcCcHHHHhhhh
Q 039637 145 LISGKLLKDAYIVV 158 (159)
Q Consensus 145 ~~~~g~~~~A~~~~ 158 (159)
+...|++++|...|
T Consensus 167 ~~~~~~~~~A~~~~ 180 (208)
T 3urz_A 167 KLFTTRYEKARNSL 180 (208)
T ss_dssp HHHHHTHHHHHHHH
T ss_pred HHHccCHHHHHHHH
Confidence 66677777777655
No 65
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.32 E-value=6.3e-11 Score=80.12 Aligned_cols=152 Identities=9% Similarity=-0.014 Sum_probs=123.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHH-HHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHIL-IKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~ 81 (159)
..+.+.|++++|.+.|+...+..+. +...+..+...+.+.|++++|...+++.... .|+....... ...+...++.
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhccc
Confidence 3567889999999999999887765 7889999999999999999999999998774 4654433322 2336677788
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS-MCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
++|...+++..+.. +.+...+..+...+...|++++|...|+++...... .+...+..+...+...|+.++|...+
T Consensus 202 ~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 202 TPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp CHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 88999999888764 457788899999999999999999999988865432 22668899999999999999987655
No 66
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.32 E-value=6.2e-11 Score=83.33 Aligned_cols=147 Identities=9% Similarity=0.040 Sum_probs=127.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD-MESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKM 80 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~ 80 (159)
..+.+.|++++|++.|+...+..+. +..+|+.+..++.+.|+ +++|+..|++..+. .| +...|..+-.++...|+
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHccC
Confidence 3567789999999999999987766 88999999999999996 99999999999984 45 46888999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCcHHHH
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS-GKLLKDA 154 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A 154 (159)
+++|+..+++.++.. +-+...|..+..++.+.|++++|...|+++.... +-+...|..+...+.+ .|..++|
T Consensus 182 ~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 182 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999864 3478899999999999999999999999998744 3467888999999999 6665666
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=3.4e-10 Score=71.19 Aligned_cols=126 Identities=11% Similarity=-0.018 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
+..+|..+...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 6788999999999999999999999999885 45 46788889999999999999999999998764 34667788888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 108 FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
..+...++++.|...+++.... .+.+...+..+...|.+.|++++|.+.|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAY 130 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHH
Confidence 9999999999999999988763 3446788899999999999999999876
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=6.9e-10 Score=72.12 Aligned_cols=129 Identities=10% Similarity=-0.150 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
.|+..+......+.+.|++++|.+.|.+..+..-.++...+..+..++...|++++|++.+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788899999999999999999999999986543677777778899999999999999999999864 33677889999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCcHHHHhhhh
Q 039637 108 FHLGKMRAHSEALSVYNMLRYSKRSMCK-------ALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
..|...|++++|...+++..... +.+. .+|..+-..+.+.|++++|.+.|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 99999999999999999888643 3344 45788889999999999999876
No 69
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.28 E-value=4.4e-10 Score=74.62 Aligned_cols=153 Identities=8% Similarity=-0.046 Sum_probs=119.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKY--DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
..|...|++++|.+.|+...+.+..+ ...+|..+...+.+.|++++|...|++..+.. +.+..++..+...+...|+
T Consensus 45 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 45 VCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC
Confidence 46788999999999999998743222 24468999999999999999999999998853 2345788899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc---HHHHhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL---LKDAYIV 157 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~ 157 (159)
+++|...+++..+.. +.+...+..+...+...+++++|...|++..... +.+...+..+...+...|+ .++|...
T Consensus 124 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 201 (272)
T 3u4t_A 124 FPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPY 201 (272)
T ss_dssp HHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHH
T ss_pred HHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHH
Confidence 999999999988763 3466677777724444569999999999888643 3346777778888888887 6556554
Q ss_pred h
Q 039637 158 V 158 (159)
Q Consensus 158 ~ 158 (159)
+
T Consensus 202 ~ 202 (272)
T 3u4t_A 202 Y 202 (272)
T ss_dssp H
T ss_pred H
Confidence 3
No 70
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=1.2e-10 Score=78.91 Aligned_cols=156 Identities=8% Similarity=-0.142 Sum_probs=119.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCC-CC----hhhHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK----YDKYD-VVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS-PD----YNTFHILI 72 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll 72 (159)
..|...|++++|.+.|.+..+. |..++ ..+|+.+..+|.+.|++++|+..|++..+.... .+ ..++..+-
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567789999999999876543 32222 568999999999999999999999988763211 11 35788888
Q ss_pred HHHHcc-ChHHHHHHHHHHHHHcC----CCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------HHHHH
Q 039637 73 KYFCKE-KMYMLAYRTMVDMHRKG----HQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK------ALHEK 140 (159)
Q Consensus 73 ~~~~~~-~~~~~a~~~~~~m~~~g----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ 140 (159)
..|... |++++|+..+++..+.. ..+. ..++..+...|.+.|++++|...|++.......... ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 999996 99999999999887532 1111 356888999999999999999999988864332221 25677
Q ss_pred HHHHHHhcCcHHHHhhhh
Q 039637 141 ILHILISGKLLKDAYIVV 158 (159)
Q Consensus 141 l~~~~~~~g~~~~A~~~~ 158 (159)
+..++...|++++|...|
T Consensus 205 lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 888999999999998765
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=4.1e-10 Score=84.96 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
+..+|+.+...|.+.|++++|+..|++..+. .|+ ...|..+-.++.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4678999999999999999999999999984 565 6888999999999999999999999999864 33678999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 108 FHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
..|.+.|++++|...|++..+.. +-+...|..+...|.+.|++++|.+.|+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999888643 3467899999999999999999998763
No 72
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.24 E-value=2.4e-09 Score=68.66 Aligned_cols=124 Identities=9% Similarity=0.026 Sum_probs=104.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.|+... .|+...|..+...+.+.|++++|...|++..+.. ..+...+..+..++...|+++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 45678899999999998764 5688999999999999999999999999998853 235678888999999999999
Q ss_pred HHHHHHHHHHHcCCC--------------C-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 039637 83 LAYRTMVDMHRKGHQ--------------P-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR 131 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 131 (159)
+|...+++..+.... | +...+..+...|.+.|++++|...|++......
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999875321 1 236788899999999999999999999886543
No 73
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.21 E-value=1.5e-09 Score=73.36 Aligned_cols=157 Identities=9% Similarity=-0.031 Sum_probs=118.5
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCC-CCHH----HHHHHHHHHHhcCChHHHHHHHHHhHhcCCC-CC----hhhHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDK-YDVV----LLNSMLCAYCRTGDMESVMHVMRKLDELAIS-PD----YNTFHIL 71 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l 71 (159)
+..+.+.|++++|.+.++...+.... |+.. .+..+...+...+++++|+..|.+..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 35577889999999999998865432 3321 3445777777888999999999999874332 22 2368889
Q ss_pred HHHHHccChHHHHHHHHHHHHH----c-CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHHHH
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHR----K-GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRY----SKRSMC-KALHEK 140 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~----~-g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~ 140 (159)
..+|...|++++|..++++..+ . +..+ ...++..+...|.+.|++++|...+++... .+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9999999999999999999884 1 2222 234778899999999999999999987653 222333 568889
Q ss_pred HHHHHHhcCc-HHHHhhhh
Q 039637 141 ILHILISGKL-LKDAYIVV 158 (159)
Q Consensus 141 l~~~~~~~g~-~~~A~~~~ 158 (159)
+-..|.+.|+ .++|.+.+
T Consensus 242 lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHH
Confidence 9999999994 68888765
No 74
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=3.4e-10 Score=85.00 Aligned_cols=147 Identities=10% Similarity=-0.069 Sum_probs=117.9
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHH
Q 039637 6 CRSGCFEETKQLAGDFE--------AKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFC 76 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~ 76 (159)
...|++++|.+.++... +..+. +...|..+..++.+.|++++|...|++..+. .| +...|..+-.++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 46788999999998887 44333 6678888888999999999999999988874 34 4577788888889
Q ss_pred ccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 77 KEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
..|++++|.+.|++..+.. +-+...+..+..+|.+.|++++ ...|++..... +-+...|..+..++.+.|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988764 2356788888888999999999 88888887633 3466788888899999999999987
Q ss_pred hh
Q 039637 157 VV 158 (159)
Q Consensus 157 ~~ 158 (159)
.|
T Consensus 556 ~~ 557 (681)
T 2pzi_A 556 TL 557 (681)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 75
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.20 E-value=1.1e-09 Score=77.08 Aligned_cols=151 Identities=6% Similarity=-0.018 Sum_probs=123.4
Q ss_pred hHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccCh
Q 039637 3 SAFCRSGC-FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKM 80 (159)
Q Consensus 3 ~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~ 80 (159)
..+...|+ +++|++.|++..+..+. +...|+.+..++.+.|++++|+..|++..+. .| +...|..+-.++.+.|+
T Consensus 139 ~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 139 VLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCC
Confidence 35667786 99999999999988776 8899999999999999999999999999984 45 56888889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--cHH
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK-MRAHSEA-----LSVYNMLRYSKRSMCKALHEKILHILISGK--LLK 152 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~ 152 (159)
+++|+..++++++.. +-+...|+.+...+.+ .|..++| ...|++..... +-+...|..+...+.+.| +++
T Consensus 216 ~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~ 293 (382)
T 2h6f_A 216 WDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYP 293 (382)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCH
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchH
Confidence 999999999999875 3477888888888888 5665777 47787776533 345678888888888887 577
Q ss_pred HHhhhh
Q 039637 153 DAYIVV 158 (159)
Q Consensus 153 ~A~~~~ 158 (159)
+|.+.+
T Consensus 294 ~a~~~~ 299 (382)
T 2h6f_A 294 NLLNQL 299 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.20 E-value=7e-10 Score=77.53 Aligned_cols=155 Identities=10% Similarity=-0.037 Sum_probs=121.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCC-C-----ChhhHHHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAK----YDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS-P-----DYNTFHILI 72 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~~~~~~~ll 72 (159)
.+...|++++|.+.|+...+. +..+ ...+|..+...|...|++++|...+.+..+.--. + ...+++.+-
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 456789999999999998754 2122 3468899999999999999999999988764111 1 135677888
Q ss_pred HHHHccChHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHH
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KR-SMCKALHEKIL 142 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 142 (159)
.+|...|++++|...+.+..+. +..+ ...++..+...|...|++++|...+++.... +. +....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 9999999999999999888743 2111 2347888999999999999999999987751 33 44467788999
Q ss_pred HHHHhcCcHHHHhhhh
Q 039637 143 HILISGKLLKDAYIVV 158 (159)
Q Consensus 143 ~~~~~~g~~~~A~~~~ 158 (159)
..|.+.|++++|...+
T Consensus 272 ~~~~~~g~~~~A~~~~ 287 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYH 287 (383)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 9999999999998876
No 77
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=2.4e-09 Score=77.98 Aligned_cols=142 Identities=8% Similarity=-0.019 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh--hhHHHHHHHHHccChHHHHHHHHHH
Q 039637 13 ETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY--NTFHILIKYFCKEKMYMLAYRTMVD 90 (159)
Q Consensus 13 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~ 90 (159)
+|.++|++..+.-.+.+...|..++..+.+.|++++|..+|++..+ +.|+. ..|......+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6666666665421122456666666666666666666666666665 33432 3555555555556666666666665
Q ss_pred HHHcCCCCcHHHHHHHHHH-HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 91 MHRKGHQPEEELCSSLIFH-LGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 91 m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
..+.. +.+...+...... +...|+.++|..+|+..... .+-+...+..++..+.+.|+.++|..+|
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 55432 1122222211111 22345555555555544432 1223445555555555555555555544
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=2.3e-09 Score=78.07 Aligned_cols=152 Identities=12% Similarity=0.016 Sum_probs=119.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHH-HHHccC
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYD-VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIK-YFCKEK 79 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~-~~~~~~ 79 (159)
..+.+.|++++|.++|++..+..+. + ...|..++..+.+.|++++|..+|++..+. .|+ ...|..... .+...|
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcC
Confidence 4566789999999999999986443 4 358999999999999999999999999874 333 222322221 233589
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCcHHHHhh
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK-RSM--CKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
++++|..+|+...+.. +-++..|..++..+.+.|+.++|..+|++..... ..| ....|...+....+.|+.+.+..
T Consensus 406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988763 3467899999999999999999999999988753 233 25578888999999999999887
Q ss_pred hh
Q 039637 157 VV 158 (159)
Q Consensus 157 ~~ 158 (159)
++
T Consensus 485 ~~ 486 (530)
T 2ooe_A 485 VE 486 (530)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 79
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.18 E-value=4.4e-10 Score=71.46 Aligned_cols=153 Identities=8% Similarity=-0.045 Sum_probs=112.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc----CCCC-ChhhHHHHHHHHHccC
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISP-DYNTFHILIKYFCKEK 79 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~ 79 (159)
....|++++|.+.++.+.. .+.....++..+...+...|++++|...+.+..+. +..| ...++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4568999999996666654 33346788999999999999999999999988762 2222 2456778888899999
Q ss_pred hHHHHHHHHHHHHHc----CCCC--cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc
Q 039637 80 MYMLAYRTMVDMHRK----GHQP--EEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSM-CKALHEKILHILISG 148 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~ 148 (159)
++++|...+.+..+. +..+ ....+..+...+...|++++|...+++.... +.+. ...++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999887753 2122 2456778889999999999999999876532 2111 123467888999999
Q ss_pred CcHHHHhhhh
Q 039637 149 KLLKDAYIVV 158 (159)
Q Consensus 149 g~~~~A~~~~ 158 (159)
|++++|.+.+
T Consensus 161 g~~~~A~~~~ 170 (203)
T 3gw4_A 161 KNLLEAQQHW 170 (203)
T ss_dssp TCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9999998765
No 80
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.17 E-value=2.7e-09 Score=68.43 Aligned_cols=123 Identities=8% Similarity=-0.050 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (159)
..+..+...+.+.|++++|...|.+.. .|+...+..+..++...|++++|...+++..+.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 445667788889999999999998773 5788899999999999999999999999998764 34678899999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 111 GKMRAHSEALSVYNMLRYSKRS--------------M-CKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 111 ~~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
...|++++|...|++....... | ....+..+...|.+.|++++|.+.|
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999988864321 1 2367889999999999999998876
No 81
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.16 E-value=7.3e-09 Score=60.32 Aligned_cols=117 Identities=15% Similarity=0.053 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
+...|..+...+.+.|++++|.+.|.++.+.. ..+..++..+...+...|++++|..+++++.+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 36788889999999999999999999998753 2356778888899999999999999999998764 346778889999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039637 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (159)
.|...|++++|...++++.... +.+...+..+...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 9999999999999999887643 33455555555555443
No 82
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=2.6e-09 Score=72.64 Aligned_cols=144 Identities=9% Similarity=0.008 Sum_probs=89.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-----ChhhHHHHHHH--
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDK-YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-----DYNTFHILIKY-- 74 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~-- 74 (159)
.++...|++++|++++......++. -+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+...+..+
T Consensus 108 ~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v 185 (310)
T 3mv2_B 108 TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYI 185 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHH
Confidence 4566678888888888777665542 25667777778888888888888888887763 45 34555555555
Q ss_pred HHccC--hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C----CCCCHHHHHHHHH
Q 039637 75 FCKEK--MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS-----K----RSMCKALHEKILH 143 (159)
Q Consensus 75 ~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~~~~~l~~ 143 (159)
....| ++.+|..+|+++.+. .|+...-..++.++.+.|++++|...++.+.+. + .+-+..+...+|.
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 22233 777888888887654 244223334444777778888888887765532 1 1334555545544
Q ss_pred HHHhcCc
Q 039637 144 ILISGKL 150 (159)
Q Consensus 144 ~~~~~g~ 150 (159)
.....|+
T Consensus 264 l~~~lgk 270 (310)
T 3mv2_B 264 LALMQGL 270 (310)
T ss_dssp HHHHTTC
T ss_pred HHHHhCh
Confidence 4444454
No 83
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.14 E-value=7.7e-09 Score=63.49 Aligned_cols=120 Identities=10% Similarity=0.013 Sum_probs=67.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 83 (159)
.+...|++++|...|+...+..+. +..+|..+...+...|++++|...+.+..+.. ..+...+..+..++...|++++
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~ 99 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 99 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHH
Confidence 345566666666666666554433 55666666666666666666666666665532 1234555556666666666666
Q ss_pred HHHHHHHHHHcCCCCcHHHHH--HHHHHHHccCCHHHHHHHHHHH
Q 039637 84 AYRTMVDMHRKGHQPEEELCS--SLIFHLGKMRAHSEALSVYNML 126 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~ 126 (159)
|...+++..+... .+...+. ..+..+.+.|++++|...++..
T Consensus 100 A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 100 ALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666665421 2333332 2233355556666666666544
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=3e-09 Score=71.94 Aligned_cols=154 Identities=6% Similarity=-0.028 Sum_probs=112.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhc-CChHHHHHHHHHhHhcCCCCC-------hhhHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDK---Y--DVVLLNSMLCAYCRT-GDMESVMHVMRKLDELAISPD-------YNTFH 69 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~-------~~~~~ 69 (159)
..|.+.|++++|...|++..+..+. + -..+++.+...|... |++++|+..|++..+. .|+ ..++.
T Consensus 85 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~ 162 (292)
T 1qqe_A 85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFI 162 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHH
Confidence 4577889999999999987643211 1 145788999999996 9999999999998763 221 35678
Q ss_pred HHHHHHHccChHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-C---HHHHH
Q 039637 70 ILIKYFCKEKMYMLAYRTMVDMHRKGHQPEE------ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM-C---KALHE 139 (159)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~ 139 (159)
.+...+.+.|++++|+..+++..+....... ..+..+..++...|++++|...|++........ + ...+.
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK 242 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 8899999999999999999999976432221 156778888999999999999999887532111 1 11344
Q ss_pred HHHHHHH--hcCcHHHHhhhh
Q 039637 140 KILHILI--SGKLLKDAYIVV 158 (159)
Q Consensus 140 ~l~~~~~--~~g~~~~A~~~~ 158 (159)
.+...+. ..+++++|...|
T Consensus 243 ~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 243 SLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 5556664 456788887765
No 85
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.13 E-value=4.1e-10 Score=79.03 Aligned_cols=155 Identities=11% Similarity=-0.053 Sum_probs=108.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhHhc----CCCC-ChhhHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDV----VLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISP-DYNTFHILIK 73 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~ 73 (159)
..+...|++++|.+.|+...+.++. +. .+|..+...|...|++++|...+++..+. +-.| ...++..+..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3567788999999999988876544 33 47888888888899999998888887653 1112 2456677778
Q ss_pred HHHccChHHHHHHHHHHHHHc----CC-CCcHHHHHHHHHHHHccCC-----------------HHHHHHHHHHHHhC--
Q 039637 74 YFCKEKMYMLAYRTMVDMHRK----GH-QPEEELCSSLIFHLGKMRA-----------------HSEALSVYNMLRYS-- 129 (159)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~~~~~-- 129 (159)
.+...|++++|...+.+..+. +. .....++..+...|...|+ +++|...+++....
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877643 11 1234467777888888888 88888887765431
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 130 --KR-SMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 130 --~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+. +....++..+...|...|++++|...+
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 11 112346677778888888888887765
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.13 E-value=6e-10 Score=83.69 Aligned_cols=142 Identities=11% Similarity=-0.019 Sum_probs=117.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~ 81 (159)
..|.+.|++++|.+.|+...+.++. +...|..+..++.+.|++++|...|++..+. .| +...+..+-.++.+.|++
T Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 441 RALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCh
Confidence 4678889999999999999987665 8889999999999999999999999999984 45 467788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
++ ++.|++..+.. +-+...+..+..++.+.|++++|...|++..... +-+...+..+..++...++
T Consensus 518 ~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 518 DE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99 99999999864 3467789999999999999999999999887532 2235667777777766444
No 87
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.12 E-value=1.4e-08 Score=68.58 Aligned_cols=157 Identities=8% Similarity=-0.055 Sum_probs=116.5
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCC---CC--hhhHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYD-V----VLLNSMLCAYCRTGDMESVMHVMRKLDELAIS---PD--YNTFHIL 71 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~~--~~~~~~l 71 (159)
+..+...|++++|.+.+....+.....+ . ..+..+...+...|++++|+..+.+..+.... +. ..+++.+
T Consensus 82 ~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 2qfc_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 3457789999999999988776543321 1 23445666778889999999999998753221 11 3478888
Q ss_pred HHHHHccChHHHHHHHHHHHHH---c-CCCC--cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHR---K-GHQP--EEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSMC-KALHEK 140 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 140 (159)
...|...|++++|...+++..+ . +..+ ...++..+...|.+.|++++|...+++.... +.... ..+|..
T Consensus 162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~ 241 (293)
T 2qfc_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999999999998872 2 1111 2258889999999999999999999976532 22222 567889
Q ss_pred HHHHHHhcCcHHHH-hhhh
Q 039637 141 ILHILISGKLLKDA-YIVV 158 (159)
Q Consensus 141 l~~~~~~~g~~~~A-~~~~ 158 (159)
+...|.+.|+.++| ...+
T Consensus 242 lg~~y~~~g~~~~Ai~~~~ 260 (293)
T 2qfc_A 242 RGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHH
Confidence 99999999999999 5533
No 88
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.12 E-value=9.2e-10 Score=68.84 Aligned_cols=123 Identities=10% Similarity=-0.014 Sum_probs=99.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHH-HHccChH--
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY-FCKEKMY-- 81 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~-- 81 (159)
+...|++++|.+.++...+..+. +...|..+...|...|++++|...|.+..+.. ..+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678999999999998877654 78899999999999999999999999998753 2345677777777 7788998
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 130 (159)
++|...+++..+.. +.+...+..+...|...|++++|...|++.....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999864 3457788889999999999999999999887643
No 89
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.11 E-value=9.9e-09 Score=62.98 Aligned_cols=126 Identities=12% Similarity=0.013 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
...|..+...+...|++++|...|.+..+.. ..+..++..+..++...|++++|...+.+..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4567888889999999999999999998853 2357788888999999999999999999998864 3467788899999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCcHHHHhhhh
Q 039637 110 LGKMRAHSEALSVYNMLRYSKRSMCKALH--EKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 110 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~ 158 (159)
+...|++++|...|++..... +.+...+ ......+.+.|++++|...+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999887643 2344454 34445588889999998765
No 90
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.10 E-value=9.2e-09 Score=59.88 Aligned_cols=107 Identities=16% Similarity=0.123 Sum_probs=87.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.|+...+..+. +..++..+...+.+.|++++|...++++.+.. ..+..++..+...+...|+++
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 94 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYD 94 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHH
Confidence 4678899999999999999876554 78899999999999999999999999998853 245678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGK 112 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 112 (159)
+|...++++.+.. +.+...+..+...+.+
T Consensus 95 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 95 EAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 9999999998764 2345555555555443
No 91
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.10 E-value=2.6e-09 Score=74.64 Aligned_cols=155 Identities=8% Similarity=-0.025 Sum_probs=119.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-----CC-ChhhHHHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYD-KY----DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-----SP-DYNTFHILI 72 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~-~~~~~~~ll 72 (159)
.+...|++++|.+.|+...+.-. .+ ...++..+...|...|++++|...+.+..+... .+ ...+++.+-
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 35678999999999998875421 12 245788899999999999999999988775311 11 145677888
Q ss_pred HHHHccChHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSMCKALHEKILH 143 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 143 (159)
.+|...|++++|.+.+.+..+. +..+ ...++..+...|...|++++|...+++.... +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 8999999999999999887753 2211 2457788899999999999999999987751 22333678889999
Q ss_pred HHHhcCcHHHHhhhh
Q 039637 144 ILISGKLLKDAYIVV 158 (159)
Q Consensus 144 ~~~~~g~~~~A~~~~ 158 (159)
.|.+.|++++|...+
T Consensus 270 ~~~~~g~~~~A~~~~ 284 (378)
T 3q15_A 270 TLCKAGQTQKAFQFI 284 (378)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 999999999998876
No 92
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.10 E-value=8.9e-09 Score=60.80 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 039637 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSL 106 (159)
Q Consensus 27 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (159)
+.+...|..+...+.+.|++++|...|++..+.. ..+...+..+..++...|++++|.+.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3467789999999999999999999999988742 2356788888899999999999999999998764 3467788899
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 039637 107 IFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK 149 (159)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (159)
...+.+.|++++|...|++..... +.+...+..+...+.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999887543 223456666666666554
No 93
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.09 E-value=1e-08 Score=60.84 Aligned_cols=110 Identities=13% Similarity=-0.013 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
...+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3567888899999999999999999988743 2346788888899999999999999999988764 3467788899999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 039637 110 LGKMRAHSEALSVYNMLRYSKRSMCKALHEKIL 142 (159)
Q Consensus 110 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 142 (159)
|...|++++|...|++..... |-+...+..+-
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 999999999999999887643 33455544443
No 94
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.09 E-value=1.4e-09 Score=76.05 Aligned_cols=154 Identities=7% Similarity=-0.103 Sum_probs=115.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhc----CC-CCChhhHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK----YDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AI-SPDYNTFHILI 72 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll 72 (159)
..|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...|++..+. +. .....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 4677889999999999887643 1111 1247888999999999999999999988772 22 22356788889
Q ss_pred HHHHccChHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRK----GHQPEEELCSSLIFHLGKMRA---HSEALSVYNMLRYSKRSMCKALHEKILHIL 145 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (159)
..+.+.|++++|...+++..+. +.+.....+..+...|...|+ .++|..++++.. ..+.....+..+...|
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHH
Confidence 9999999999999999887753 222223346778888888998 777887777662 2222345677889999
Q ss_pred HhcCcHHHHhhhh
Q 039637 146 ISGKLLKDAYIVV 158 (159)
Q Consensus 146 ~~~g~~~~A~~~~ 158 (159)
.+.|++++|...+
T Consensus 350 ~~~g~~~~A~~~~ 362 (383)
T 3ulq_A 350 HERKNFQKASAYF 362 (383)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHH
Confidence 9999999998876
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=8.5e-09 Score=70.15 Aligned_cols=140 Identities=9% Similarity=0.003 Sum_probs=105.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-CCChhhHHHHHHHHHccChHHHHHHHHHHHH
Q 039637 14 TKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPDYNTFHILIKYFCKEKMYMLAYRTMVDMH 92 (159)
Q Consensus 14 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (159)
|...|+++.+.+ .++..++..+..++...|++++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677666554 44666667888999999999999999998866543 1356778889999999999999999999998
Q ss_pred HcCCCC-----cHHHHHHHHHHH--HccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 93 RKGHQP-----EEELCSSLIFHL--GKMR--AHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 93 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+. .| +..+...+..++ ...| +..+|..+|+++... .|+...-..++.++.+.|++++|...+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 75 45 244555565553 3234 899999999998753 344333345555999999999999876
No 96
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.07 E-value=1.9e-08 Score=59.00 Aligned_cols=120 Identities=13% Similarity=0.046 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
+...+..+...+...|++++|...|++..+.. ..+...+..+..++...|++++|.+.+.+..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 56678888899999999999999999988753 2356778888889999999999999999988763 345778888999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
.+...|++++|...|++..... +.+...+..+...+.+.|+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999887643 34667777888888777764
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=4e-08 Score=63.40 Aligned_cols=147 Identities=13% Similarity=0.020 Sum_probs=115.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc-
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG----DMESVMHVMRKLDELAISPDYNTFHILIKYFCK- 77 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~- 77 (159)
..|...+++++|.+.|++..+.| ++..+..|-..|.. + ++++|...|++..+.| +...+..|-..|..
T Consensus 26 ~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 26 DTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNR 98 (212)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCG
T ss_pred HHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 35667899999999999988754 66778888888887 6 8999999999998754 55677778788877
Q ss_pred ---cChHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 039637 78 ---EKMYMLAYRTMVDMHRKGHQ-PEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISG- 148 (159)
Q Consensus 78 ---~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 148 (159)
.+++++|.++|.+..+.|.. .++..+..|...|.. .++.++|..+|++....+ .+...+..+-..|...
T Consensus 99 ~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~ 176 (212)
T 3rjv_A 99 QAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGE 176 (212)
T ss_dssp GGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCB
T ss_pred CCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence 78999999999999887642 126788888888888 789999999999987652 2334566777777654
Q ss_pred C-----cHHHHhhhh
Q 039637 149 K-----LLKDAYIVV 158 (159)
Q Consensus 149 g-----~~~~A~~~~ 158 (159)
| +.++|...|
T Consensus 177 gg~~~~d~~~A~~~~ 191 (212)
T 3rjv_A 177 KGFIEPNKQKALHWL 191 (212)
T ss_dssp TTTBCCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH
Confidence 3 889988776
No 98
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=5.9e-09 Score=72.80 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=115.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhc----CCCCChhhHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK----YDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISPDYNTFHILIK 73 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~ 73 (159)
..|...|++++|.+.|++..+. +..+ ...+++.+...|...|++++|.+.|.+..+. +-+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 4677889999999999886642 2221 2357888999999999999999999988762 22223667788889
Q ss_pred HHHccChHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039637 74 YFCKEKMYMLAYRTMVDMHRKG----HQPEEELCSSLIFHLGKMRA---HSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (159)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (159)
.+.+.|++++|...+++..+.. .+.....+..+...|...++ .++|...+++.. ..+.....+..+...|.
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHH
Confidence 9999999999999999988642 22234456677777788888 788888777632 22223446678899999
Q ss_pred hcCcHHHHhhhh
Q 039637 147 SGKLLKDAYIVV 158 (159)
Q Consensus 147 ~~g~~~~A~~~~ 158 (159)
+.|++++|...|
T Consensus 348 ~~g~~~~A~~~~ 359 (378)
T 3q15_A 348 SSCHFEQAAAFY 359 (378)
T ss_dssp HTTCHHHHHHHH
T ss_pred HCCCHHHHHHHH
Confidence 999999998876
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=2.4e-08 Score=73.40 Aligned_cols=125 Identities=9% Similarity=-0.107 Sum_probs=108.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..|.+.|++++|.+.|++..+..+. +...|..+...|.+.|++++|.+.|++..+.. ..+...+..+..++...|+++
T Consensus 31 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 108 (568)
T 2vsy_A 31 DAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAE 108 (568)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 4677889999999999999987655 78899999999999999999999999998853 234678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc---CCHHHHHHHHHHHHhCC
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKM---RAHSEALSVYNMLRYSK 130 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~ 130 (159)
+|.+.+++..+.. +.+...+..+...+... |+.++|...+++....+
T Consensus 109 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 109 AAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999999998864 34677888999999999 99999999999887643
No 100
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.03 E-value=1.6e-08 Score=59.26 Aligned_cols=111 Identities=12% Similarity=0.051 Sum_probs=92.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.|+...+..+. +...|..+...+...|++++|...+.+..+.. ..+...+..+..++...|+++
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 97 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHV 97 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHH
Confidence 4677889999999999998876554 78899999999999999999999999998853 234677888889999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (159)
+|...+.+..+.. +.+...+..+..++.+.|+.
T Consensus 98 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 98 EAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999998764 23666777777777776653
No 101
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.03 E-value=4e-09 Score=64.44 Aligned_cols=110 Identities=16% Similarity=-0.022 Sum_probs=88.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcC
Q 039637 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (159)
+.|+...+..+. +...+..+...+.+.|++++|...|.+..... +.+...|..+-.++...|++++|...+++..+..
T Consensus 8 ~~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344555543322 56778888999999999999999999998753 2356778888899999999999999999998764
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 96 HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
+.++..+..+..+|...|++++|...|++...
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34667888899999999999999999998775
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.03 E-value=4e-08 Score=58.30 Aligned_cols=102 Identities=9% Similarity=0.089 Sum_probs=84.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..|.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++...|+++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHH
Confidence 4578899999999999999887665 88999999999999999999999999998843 234678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
+|.+.|++.++.. +-+......+-
T Consensus 99 ~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 99 KAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 9999999998863 23455554443
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.02 E-value=5.6e-09 Score=71.11 Aligned_cols=155 Identities=11% Similarity=-0.030 Sum_probs=109.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC---CCC--hhhHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK----YDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI---SPD--YNTFHILI 72 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~ll 72 (159)
..|...|++++|.+.|.+..+. +..+ -..+|+.+...|.+.|++++|+..|++..+.-. .|. ..++..+-
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567778999998888876533 1111 145788888999999999999999988765311 121 35677778
Q ss_pred HHHHccChHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSMC-KALHEKIL 142 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~ 142 (159)
..|.. |++++|+..+++..+. +..+ ...++..+...|.+.|++++|...|++.... +..+. ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 88888 9999999999887743 2111 1457788889999999999999999877642 22111 22566677
Q ss_pred HHHHhcCcHHHHhhhh
Q 039637 143 HILISGKLLKDAYIVV 158 (159)
Q Consensus 143 ~~~~~~g~~~~A~~~~ 158 (159)
.++...|++++|...|
T Consensus 203 ~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 7788889999998765
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=9.6e-09 Score=62.80 Aligned_cols=109 Identities=9% Similarity=0.052 Sum_probs=90.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 81 (159)
..|.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|++++|...|++..+. .|+ ...+..+...+.+.|++
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCh
Confidence 5688999999999999999987766 8999999999999999999999999999984 564 67888899999999998
Q ss_pred HHHHHH-HHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 039637 82 MLAYRT-MVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (159)
Q Consensus 82 ~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (159)
+++.+. +++..+.. +-++.+|......+.+.|+
T Consensus 116 ~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 116 DGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 776554 57777653 3366778777777766664
No 105
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=2e-08 Score=66.56 Aligned_cols=152 Identities=10% Similarity=0.009 Sum_probs=113.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHh--------cCChHHHHHHHHHhHhcCCCCCh-hhH---
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDK-Y-DVVLLNSMLCAYCR--------TGDMESVMHVMRKLDELAISPDY-NTF--- 68 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~-~~~--- 68 (159)
..|.+.|++++|.+.|+...+..+. | ....+..+..++.+ .|++++|...|++..+. .|+. ...
T Consensus 60 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 137 (261)
T 3qky_A 60 RAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT 137 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH
Confidence 4678899999999999999987542 2 35677888888888 99999999999999885 3542 333
Q ss_pred --------------HHHHHHHHccChHHHHHHHHHHHHHcCCC-C-cHHHHHHHHHHHHcc----------CCHHHHHHH
Q 039637 69 --------------HILIKYFCKEKMYMLAYRTMVDMHRKGHQ-P-EEELCSSLIFHLGKM----------RAHSEALSV 122 (159)
Q Consensus 69 --------------~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~----------g~~~~a~~~ 122 (159)
..+...+.+.|++++|+..|+++.+.... + ....+..+..+|... |++++|...
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 44577889999999999999999876322 1 345777788888866 899999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCcHHHHhh
Q 039637 123 YNMLRYSKRSMC--KALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 123 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
|+++........ ......+-..+.+.++++++..
T Consensus 218 ~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 218 YERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 998886432211 3455566666777777666554
No 106
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.02 E-value=2.6e-09 Score=72.37 Aligned_cols=155 Identities=11% Similarity=-0.058 Sum_probs=110.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhHhc----CCCCC-hhhHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYD----VVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISPD-YNTFHILIK 73 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~ 73 (159)
..+...|++++|...|+...+..+. + ...+..+...+...|++++|.+.+.+..+. +-.|. ..++..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3567889999999999998876544 3 367888888999999999999998886543 11222 456677788
Q ss_pred HHHccChHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHHh
Q 039637 74 YFCKEKMYMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRA--------------------HSEALSVYNMLRY 128 (159)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~~~ 128 (159)
.+...|++++|...+.+..+. +..+ ...++..+...|...|+ +++|...+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 888889999999888887643 1111 13467778888888888 8888888876542
Q ss_pred C----CC-CCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 129 S----KR-SMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 129 ~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
. +. +....++..+...+...|++++|...+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 206 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 206 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1 11 112346777778888888888887765
No 107
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.01 E-value=1.9e-08 Score=69.52 Aligned_cols=123 Identities=9% Similarity=-0.059 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC----------------hhhHHHHHHHHHccChHHHHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----------------YNTFHILIKYFCKEKMYMLAYRTMVDMH 92 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (159)
+...|..+...+.+.|++++|...|++..+. .|+ ...|..+..++.+.|++++|+..+++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556777777788888888888888877764 343 3677777777888888888888888777
Q ss_pred HcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 93 RKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 93 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
+.. +.+...+..+..+|...|++++|...|++..... +.+..++..+...+.+.|+.++|.
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 753 3366677777888888888888888888776532 335667777777777777777763
No 108
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.00 E-value=3.6e-08 Score=68.09 Aligned_cols=123 Identities=8% Similarity=0.030 Sum_probs=103.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYD--------------VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF 68 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 68 (159)
..|.+.|++++|.+.|++..+..+... ..+|..+..+|.+.|++++|+..+++..+.. +.+...|
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~ 233 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGL 233 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 467889999999999999988765532 6899999999999999999999999999853 2357888
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHH-HHHHHHH
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL-SVYNMLR 127 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~ 127 (159)
..+..++...|++++|+..|++.++.. +-+..++..+..++.+.|+.++|. ..++.|.
T Consensus 234 ~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 234 SRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999864 346778889999999999999884 4555553
No 109
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.00 E-value=2.3e-08 Score=59.02 Aligned_cols=109 Identities=9% Similarity=0.021 Sum_probs=89.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+.+.|++++|.+.|+...+..+. +...+..+...+...|++++|...+++..+.. ..+...+..+..++...|+++
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~ 101 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYT 101 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHH
Confidence 4678899999999999999877554 78899999999999999999999999998853 234678888899999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR 114 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 114 (159)
+|.+.+++..+.. +.+...+..+...+.+.|
T Consensus 102 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 102 KAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 9999999998753 234556666666666554
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.99 E-value=1e-08 Score=62.94 Aligned_cols=99 Identities=10% Similarity=0.008 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
+...+..+...+.+.|++++|...|++.... .| +...|..+-.++...|++++|+..|++..+.. +-++..+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 5667888889999999999999999999884 45 46788888899999999999999999998864 34677888999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCC
Q 039637 108 FHLGKMRAHSEALSVYNMLRYSK 130 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~~ 130 (159)
.+|.+.|++++|...|++.....
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999888643
No 111
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.98 E-value=5.3e-09 Score=72.93 Aligned_cols=155 Identities=11% Similarity=-0.064 Sum_probs=107.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhHhc----CCCCC-hhhHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYD----VVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISPD-YNTFHILIK 73 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~ 73 (159)
..+...|++++|...|+...+.++. + ..+|..+...+...|++++|...+.+.... +-.|. ..++..+..
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3567788999999999888876544 3 356788888888899999998888876543 11122 456667777
Q ss_pred HHHccChHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHHh
Q 039637 74 YFCKEKMYMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRA--------------------HSEALSVYNMLRY 128 (159)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~~~ 128 (159)
.+...|++++|...+.+..+. +..+ ...++..+...|...|+ +++|...+++...
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 888888888888888777643 1111 13467777788888888 8888888776542
Q ss_pred C----CCCC-CHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 129 S----KRSM-CKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 129 ~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
. +..| ...++..+...|...|++++|...+
T Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (406)
T 3sf4_A 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1 1111 1345677778888888888887765
No 112
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.97 E-value=2.6e-09 Score=74.97 Aligned_cols=156 Identities=10% Similarity=-0.038 Sum_probs=93.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc----CCCC-ChhhHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK----YD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISP-DYNTFHILI 72 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll 72 (159)
..|...|++++|.+.|++..+. +. .....++..+...|...|++++|...+.+..+. +-.| ...++..+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 94 NAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3556677888888877765532 11 123456777777777778888877777776553 1111 134566666
Q ss_pred HHHHccCh-----------------HHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 039637 73 KYFCKEKM-----------------YMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSK 130 (159)
Q Consensus 73 ~~~~~~~~-----------------~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 130 (159)
..+...|+ +++|.+.+.+..+. +..+ ...++..+...|...|++++|...+++.....
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 77777777 77777777665432 1111 23456666777777777777777776554321
Q ss_pred C-CCC----HHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 131 R-SMC----KALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 131 ~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
. .++ ..++..+...|...|++++|...+
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 0 011 225566667777777777776654
No 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=6.4e-08 Score=62.21 Aligned_cols=132 Identities=9% Similarity=0.009 Sum_probs=97.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccCh-
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKM- 80 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~- 80 (159)
..|.+.|++++|.+.|++..+..+. +...|..+...+...|++++|...|++..+. .|+ ..++..+..++...|+
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHH
Confidence 4577899999999999999988766 8899999999999999999999999999984 464 6777778777766654
Q ss_pred -HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 039637 81 -YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKI 141 (159)
Q Consensus 81 -~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 141 (159)
...+...+..... ..|....+.....++...|++++|...|++... ..|+......+
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 3445555555432 222223344455666778999999999999985 35666544433
No 114
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.97 E-value=2.1e-08 Score=59.60 Aligned_cols=106 Identities=15% Similarity=0.065 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcC--CCCc----HHHH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKG--HQPE----EELC 103 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~~~ 103 (159)
..+..+...+.+.|++++|++.|.+..+. .|+ ...|..+-.+|...|++++|++.+++.++.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45667778888888888888888887774 344 5667777788888888888888887776532 1111 2356
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 039637 104 SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEK 140 (159)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 140 (159)
..+..++...|++++|...|++.... .|+..+...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 67778888888888888888876643 345554433
No 115
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.97 E-value=4e-08 Score=68.22 Aligned_cols=155 Identities=11% Similarity=-0.024 Sum_probs=115.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHhHhcCC-CCC----hhhHHHHHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVV----LLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPD----YNTFHILIKY 74 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~ 74 (159)
.+...|++++|...++......+..+.. +++.+...+...|++++|...+.+.....- .++ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4567899999999999987655433332 567777888899999999999998775311 111 1335567778
Q ss_pred HHccChHHHHHHHHHHHHHc----CCC--C-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHH
Q 039637 75 FCKEKMYMLAYRTMVDMHRK----GHQ--P-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKR----SMCKALHEKILH 143 (159)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~ 143 (159)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++...... +....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 89999999999999888743 222 3 234566788889999999999999997764321 112456778889
Q ss_pred HHHhcCcHHHHhhhh
Q 039637 144 ILISGKLLKDAYIVV 158 (159)
Q Consensus 144 ~~~~~g~~~~A~~~~ 158 (159)
.+...|++++|...+
T Consensus 183 ~~~~~g~~~~A~~~l 197 (373)
T 1hz4_A 183 CSLARGDLDNARSQL 197 (373)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 999999999998765
No 116
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.95 E-value=2.2e-09 Score=74.85 Aligned_cols=148 Identities=8% Similarity=-0.076 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-CCC----hhhHHHHHHHHHccCh
Q 039637 11 FEETKQLAGDFEAK----YDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPD----YNTFHILIKYFCKEKM 80 (159)
Q Consensus 11 ~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~ 80 (159)
+++|.+.++...+. +..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 89999888875432 2122 245788899999999999999999998876311 111 2377888899999999
Q ss_pred HHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCc
Q 039637 81 YMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSM-CKALHEKILHILISGKL 150 (159)
Q Consensus 81 ~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~ 150 (159)
+++|...+++..+. +..+ ...++..+...|...|++++|...+++.... +..+ ...++..+...|.+.|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999988743 2111 1567788999999999999999999877642 1111 15577888999999999
Q ss_pred HHHHhhhh
Q 039637 151 LKDAYIVV 158 (159)
Q Consensus 151 ~~~A~~~~ 158 (159)
+++|...+
T Consensus 323 ~~~A~~~~ 330 (406)
T 3sf4_A 323 HDQAMHFA 330 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.95 E-value=4.2e-08 Score=60.14 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=49.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~ 82 (159)
.+.+.|++++|.+.|+...+..|. +...|..+..+|.+.|++++|+..|++..+. .|+ ...|..+-.++...|+++
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~ 121 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPL 121 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHH
Confidence 344556666666666665555443 5555666666666666666666666655553 232 445555555566666666
Q ss_pred HHHHHHHHHHHc
Q 039637 83 LAYRTMVDMHRK 94 (159)
Q Consensus 83 ~a~~~~~~m~~~ 94 (159)
+|...|++..+.
T Consensus 122 eA~~~~~~al~l 133 (151)
T 3gyz_A 122 KAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666655553
No 118
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.94 E-value=3.8e-09 Score=67.30 Aligned_cols=146 Identities=8% Similarity=-0.072 Sum_probs=96.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCC-CC--------------hhhHHHH
Q 039637 7 RSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS-PD--------------YNTFHIL 71 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~--------------~~~~~~l 71 (159)
..|.++++.+.|+.-.+..+ .....+..+...+.+.|++++|...|.+..+..-. |+ ...+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 34555555555542221111 13456777788888889999999999888763211 10 1577778
Q ss_pred HHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
..++...|++++|+..+.+..+.. +.+...+..+..+|...|++++|...|++..... +-+..++..+..++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHH
Confidence 888888899999999988888763 3467788888888888999999999988877532 33566777777777777766
Q ss_pred HHHh
Q 039637 152 KDAY 155 (159)
Q Consensus 152 ~~A~ 155 (159)
+++.
T Consensus 173 ~~~~ 176 (198)
T 2fbn_A 173 RKKD 176 (198)
T ss_dssp HC--
T ss_pred HHHH
Confidence 6554
No 119
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.94 E-value=3e-07 Score=52.77 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45567778888888889999988888887743 2256677778888888889999988888888764 335677888888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 039637 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALHEK 140 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 140 (159)
.+...|++++|...+++..... +.+...+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 111 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEG 111 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 8888899999999988887543 234444333
No 120
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.93 E-value=2.7e-09 Score=72.27 Aligned_cols=148 Identities=9% Similarity=-0.084 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-CCC----hhhHHHHHHHHHccCh
Q 039637 11 FEETKQLAGDFEAK----YDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPD----YNTFHILIKYFCKEKM 80 (159)
Q Consensus 11 ~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~ 80 (159)
+++|.+.++...+. +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 88898888875432 2122 245788889999999999999999998775311 011 2377888889999999
Q ss_pred HHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCc
Q 039637 81 YMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KR-SMCKALHEKILHILISGKL 150 (159)
Q Consensus 81 ~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~ 150 (159)
+++|...+++..+. +..+ ...++..+...|...|++++|...+++.... +. .....++..+...|.+.|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999887743 1111 1557788899999999999999999877542 11 1114467789999999999
Q ss_pred HHHHhhhh
Q 039637 151 LKDAYIVV 158 (159)
Q Consensus 151 ~~~A~~~~ 158 (159)
+++|...+
T Consensus 319 ~~~A~~~~ 326 (338)
T 3ro2_A 319 HDQAMHFA 326 (338)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999876
No 121
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2e-07 Score=55.93 Aligned_cols=113 Identities=13% Similarity=-0.011 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC----hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHH
Q 039637 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELC 103 (159)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 103 (159)
.+...+..+...+.+.|++++|...|++..+. .|+ ...+..+..++...|++++|...+.+..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 36778899999999999999999999999874 566 5778888889999999999999999988763 3367788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039637 104 SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (159)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (159)
..+..+|...|++++|...|++..... +.+...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 889999999999999999999887642 3344444444433
No 122
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.93 E-value=4.6e-07 Score=65.39 Aligned_cols=13 Identities=0% Similarity=-0.156 Sum_probs=5.1
Q ss_pred CCHHHHHHHHHHH
Q 039637 9 GCFEETKQLAGDF 21 (159)
Q Consensus 9 ~~~~~A~~~~~~~ 21 (159)
++.++|.+.|++.
T Consensus 93 ~~~~~A~~~~~~a 105 (490)
T 2xm6_A 93 QDYAQAVIWYKKA 105 (490)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3344444444333
No 123
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.91 E-value=7.3e-07 Score=64.35 Aligned_cols=139 Identities=6% Similarity=-0.167 Sum_probs=109.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc----cC
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR----TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK----EK 79 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~ 79 (159)
.+++++|.+.|+...+.| +...+..|...|.. .+++++|...|.+..+.| +...+..|-..|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 789999999999988753 56788888888888 899999999999988864 55666667777777 78
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcH
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRSMCKALHEKILHILIS----GKLL 151 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 151 (159)
++++|.++|++..+.| ++..+..+...|.. .++.++|...|++....+ +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 8999999999888765 45566667777776 678888888888877653 55666777777777 7778
Q ss_pred HHHhhhh
Q 039637 152 KDAYIVV 158 (159)
Q Consensus 152 ~~A~~~~ 158 (159)
++|...|
T Consensus 204 ~~A~~~~ 210 (490)
T 2xm6_A 204 AISAQWY 210 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777665
No 124
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.90 E-value=4.7e-08 Score=55.77 Aligned_cols=100 Identities=9% Similarity=-0.028 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCC--cHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP--EEELCSSL 106 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~l 106 (159)
+...|..+...+.+.|++++|...|++..+.. ..+...+..+..++...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44567777888888888888888888887753 2345677778888888888999988888888753 23 56778888
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHhCC
Q 039637 107 IFHLGKM-RAHSEALSVYNMLRYSK 130 (159)
Q Consensus 107 i~~~~~~-g~~~~a~~~~~~~~~~~ 130 (159)
...+.+. |++++|.+.++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 8888888 99999999888887643
No 125
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.89 E-value=2.2e-07 Score=53.34 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=83.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|.+.|+...+..+. +...+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|+++
T Consensus 12 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 89 (118)
T 1elw_A 12 NKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 89 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHH
Confidence 4677899999999999999877654 78899999999999999999999999998853 234677888899999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
+|.+.+.+..+.. +.+...+..+.
T Consensus 90 ~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 90 EAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 9999999998754 23444444443
No 126
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.89 E-value=2.8e-08 Score=58.34 Aligned_cols=114 Identities=10% Similarity=0.042 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCC--CCc----HHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGH--QPE----EELC 103 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~ 103 (159)
...|..+...+...|++++|...|.+..+.. +.+...+..+..++...|++++|...+.+..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4566777778888888888888888877643 23456677777778888888888888887775421 111 5677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 039637 104 SSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILI 146 (159)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (159)
..+...|...|++++|...|+...... |+......+.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 777888888888888888888777533 35555454444443
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.88 E-value=6.2e-08 Score=65.22 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=77.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~ 81 (159)
..+.+.|++++|.+.|+...+..+. +...|..+..+|.+.|++++|...+.+..+. .| +...+..+..++...|++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESY 88 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 4677899999999999999887654 8899999999999999999999999998874 45 467788888999999999
Q ss_pred HHHHHHHHHHHHc
Q 039637 82 MLAYRTMVDMHRK 94 (159)
Q Consensus 82 ~~a~~~~~~m~~~ 94 (159)
++|...+.+..+.
T Consensus 89 ~~A~~~~~~al~l 101 (281)
T 2c2l_A 89 DEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887753
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.88 E-value=4.2e-08 Score=59.19 Aligned_cols=98 Identities=13% Similarity=-0.030 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
+...+..+...+.+.|++++|...|.+..... +.+...|..+..++...|++++|...+++..+.. +.++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 45567777888899999999999999988753 2356777788888999999999999999998764 346677888899
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 039637 109 HLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~ 128 (159)
+|...|++++|...|+....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999997764
No 129
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.88 E-value=4.9e-07 Score=53.66 Aligned_cols=119 Identities=6% Similarity=-0.175 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
.+...|..+...+.+.|++++|...|.+..... +.+...|..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467889999999999999999999999988853 2346788888899999999999999999998864 34677888999
Q ss_pred HHHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 039637 108 FHLGKMRAHSEALSVYNMLRYS----KRSMCKALHEKILHILISG 148 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 148 (159)
.+|...|++++|...|++.... ....+..+...+..+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877642 2223444545554444433
No 130
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.87 E-value=8.6e-08 Score=54.66 Aligned_cols=90 Identities=7% Similarity=-0.106 Sum_probs=67.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC---ChhhHHHHHHHHHcc-
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP---DYNTFHILIKYFCKE- 78 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~- 78 (159)
..+.+.|++++|...|+...+..+. +...|..+...+.+.|++++|...|++..+. .| +...+..+..++...
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHHHHHHHHh
Confidence 3466778888888888887766544 6677788888888888888888888887774 23 356777777788888
Q ss_pred ChHHHHHHHHHHHHHcC
Q 039637 79 KMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g 95 (159)
|++++|.+.+.......
T Consensus 91 ~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 91 GKEVEAEIAEARAKLEH 107 (112)
T ss_dssp SCSHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHhhcc
Confidence 88888888888887654
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.87 E-value=2.5e-07 Score=57.02 Aligned_cols=98 Identities=10% Similarity=-0.110 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
+...|..+...+.+.|++++|+..|.+..+.. .-+...|..+..++...|++++|+..+++.++.. +.+...+..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777777777777777777777777642 1245666677777777777777777777777653 235667777777
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 039637 109 HLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~ 128 (159)
+|...|++++|...|++...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 77777777777777776654
No 132
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=2.3e-07 Score=59.83 Aligned_cols=137 Identities=12% Similarity=-0.020 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC----hHHHHHHH
Q 039637 12 EETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK----MYMLAYRT 87 (159)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~ 87 (159)
.+|.+.|+...+. -++..+..+...|...+++++|...|++..+.| +...+..|-..|.. + ++++|.++
T Consensus 3 ~eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3577788887764 377889999999999999999999999998865 55677777777777 6 89999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCcHHHHhhhh
Q 039637 88 MVDMHRKGHQPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKRS-MCKALHEKILHILIS----GKLLKDAYIVV 158 (159)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~ 158 (159)
|++..+.| ++..+..|...|.. .+++++|..+|++....+.. .+...+..+-..|.. .++.++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998865 55677788888887 88999999999999876532 125677888888888 88899998876
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=8.1e-08 Score=64.55 Aligned_cols=134 Identities=7% Similarity=0.002 Sum_probs=101.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC--hhhHHHHHHHHHccCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKM 80 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~ 80 (159)
..+...|++++|.++|+.+...++. +. ..-.+...+.+.+++++|+..|....... .|. ...+..+-.++...|+
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence 4578889999999999888875543 33 66666678999999999999998654421 111 2366778888999999
Q ss_pred HHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 039637 81 YMLAYRTMVDMHRKGHQP--EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKI 141 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 141 (159)
+++|+..|++.......| .+........++.+.|+.++|..+|+++.... |+...+..|
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 999999999998544324 34466677888999999999999999998754 334444444
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.2e-07 Score=54.62 Aligned_cols=97 Identities=10% Similarity=-0.045 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
...|..+...+.+.|++++|+..|.+..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4566777777888888888888888877742 2245777778888888888888888888887754 2356677778888
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 039637 110 LGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 110 ~~~~g~~~~a~~~~~~~~~ 128 (159)
+...|++++|...|++...
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 8888888888888887764
No 135
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.86 E-value=1.6e-07 Score=65.15 Aligned_cols=156 Identities=10% Similarity=-0.053 Sum_probs=108.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCC--C--ChhhHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK----YDK--Y-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS--P--DYNTFHIL 71 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~--~~~~~~~l 71 (159)
..+...|++++|.+.++...+. +.. | ....+..+...+...|++++|...+.+.....-. + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 3567789999999999876543 221 2 2456777888899999999999999988764321 1 13456677
Q ss_pred HHHHHccChHHHHHHHHHHHHHcCCCCc-HHHHH-----HHHHHHHccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHRKGHQPE-EELCS-----SLIFHLGKMRAHSEALSVYNMLRYSKRSM---CKALHEKIL 142 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 142 (159)
...+...|++++|...+++.......++ ...+. ..+..+...|+.++|...++........+ ....+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7888999999999999988875421211 11121 23344778999999999998876533221 133566778
Q ss_pred HHHHhcCcHHHHhhhh
Q 039637 143 HILISGKLLKDAYIVV 158 (159)
Q Consensus 143 ~~~~~~g~~~~A~~~~ 158 (159)
..+...|++++|...+
T Consensus 261 ~~~~~~g~~~~A~~~l 276 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVL 276 (373)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 8899999999988765
No 136
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.86 E-value=1.2e-07 Score=55.46 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=85.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC--CCC----hhhHHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI--SPD----YNTFHILIKYFC 76 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~ll~~~~ 76 (159)
..+...|++++|...|+...+..+. +...+..+...+.+.|++++|...+.+...... .++ ..++..+..++.
T Consensus 12 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 12 NDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 4677899999999999999877654 788999999999999999999999999887532 122 667888889999
Q ss_pred ccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039637 77 KEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (159)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (159)
..|++++|.+.+.+..+.. |+......+....
T Consensus 91 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 91 KEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 9999999999999998864 5665555554443
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.85 E-value=2.2e-08 Score=72.35 Aligned_cols=118 Identities=10% Similarity=0.028 Sum_probs=94.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~ 81 (159)
..+.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|++++|++.+++..+. .| +...+..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 3567889999999999999887655 7899999999999999999999999999985 45 467888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHH--HHccCCHHHHHHHHH
Q 039637 82 MLAYRTMVDMHRKGHQPEEELCSSLIFH--LGKMRAHSEALSVYN 124 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 124 (159)
++|.+.+++..+.. +-+...+..+..+ +.+.|++++|...++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998763 2244455555555 888899999999988
No 138
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.85 E-value=1.4e-07 Score=67.38 Aligned_cols=94 Identities=12% Similarity=-0.007 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcH--HHHHHHHH-HHHccCCHHHHHHHHHHHHhCC-----------
Q 039637 65 YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEE--ELCSSLIF-HLGKMRAHSEALSVYNMLRYSK----------- 130 (159)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~----------- 130 (159)
..++..+...+...|++++|+..|++.++....+.. ..+..+.. .....|+.++|...|++.....
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~ 413 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD 413 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 344555666667777777777777777665332221 11222221 2235567777777666554321
Q ss_pred ------------CCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 131 ------------RSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 131 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+.+..+|..+-..|...|++++|.+.|
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1233456666777777777777776665
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.84 E-value=1.4e-07 Score=55.95 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=80.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh--------hhHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY--------NTFHILIKY 74 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------~~~~~ll~~ 74 (159)
..+.+.|++++|++.|++..+..+. +...|+.+..+|.+.|++++|++.+.+..+. .|+. .+|..+-.+
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~lg~~ 92 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAMSRAGNA 92 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHHHHH
Confidence 4678899999999999999887665 7889999999999999999999999998874 2321 356777788
Q ss_pred HHccChHHHHHHHHHHHHHcCCCCcHHHHHH
Q 039637 75 FCKEKMYMLAYRTMVDMHRKGHQPEEELCSS 105 (159)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 105 (159)
+...|++++|++.|++.++. .|++.+...
T Consensus 93 ~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 93 FQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 89999999999999998874 466655543
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.84 E-value=2.1e-07 Score=59.12 Aligned_cols=124 Identities=7% Similarity=0.004 Sum_probs=94.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYD---------------VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT 67 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 67 (159)
..+.+.|++++|.+.|+...+..+.-. ..+|..+..+|.+.|++++|+..+.+..+.. ..+...
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 124 (198)
T 2fbn_A 46 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKA 124 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHH
Confidence 457788999999999999887544311 2788999999999999999999999998853 235678
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHH-HHHHHHHh
Q 039637 68 FHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL-SVYNMLRY 128 (159)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~ 128 (159)
+..+..++...|++++|.+.|++..+.. +-+..++..+..++...++.+++. ..|..+..
T Consensus 125 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 125 LYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999998764 336678888888888888877777 45555543
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.8e-07 Score=54.16 Aligned_cols=89 Identities=11% Similarity=0.061 Sum_probs=79.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 81 (159)
..+.+.|++++|.+.|+...+..+. +...|..+..++.+.|++++|+..|++..+. .|+ ...|..+..++...|++
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhCH
Confidence 4578899999999999999887665 7899999999999999999999999999985 354 67888899999999999
Q ss_pred HHHHHHHHHHHHc
Q 039637 82 MLAYRTMVDMHRK 94 (159)
Q Consensus 82 ~~a~~~~~~m~~~ 94 (159)
++|...+++..+.
T Consensus 89 ~~A~~~~~~al~~ 101 (126)
T 3upv_A 89 ASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.83 E-value=1.4e-07 Score=63.35 Aligned_cols=119 Identities=7% Similarity=-0.061 Sum_probs=90.6
Q ss_pred HHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHccCC
Q 039637 38 CAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE--EELCSSLIFHLGKMRA 115 (159)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~ 115 (159)
..+...|++++|.++|..+...+ |+......+-..+.+.+++++|+..|....... .|. ..++..+..++.+.|+
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence 45677889999999998887643 654455556667889999999999998554432 121 3467788899999999
Q ss_pred HHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 116 HSEALSVYNMLRYSKRSMC--KALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
+++|+..|++.......|. .........++.+.|+.++|..+|+
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999986443243 4466778889999999999998873
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.83 E-value=1.6e-07 Score=56.63 Aligned_cols=90 Identities=6% Similarity=-0.104 Sum_probs=78.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+.+.|++++|.+.|+...+..+. +...|..+..++.+.|++++|...|++..... +.+...+..+..++...|+++
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 4577889999999999999987765 88899999999999999999999999999853 234567788889999999999
Q ss_pred HHHHHHHHHHHc
Q 039637 83 LAYRTMVDMHRK 94 (159)
Q Consensus 83 ~a~~~~~~m~~~ 94 (159)
+|...++...+.
T Consensus 104 ~A~~~~~~al~~ 115 (142)
T 2xcb_A 104 GAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.83 E-value=2.6e-07 Score=56.92 Aligned_cols=90 Identities=12% Similarity=0.018 Sum_probs=80.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 81 (159)
..+.+.|++++|.+.|+...+..+. +...|..+..+|.+.|++++|+..|++..+.. |+ ...|..+..++...|++
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLARFDMADY 95 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCH
Confidence 4678899999999999999887665 88999999999999999999999999999853 54 67888899999999999
Q ss_pred HHHHHHHHHHHHcC
Q 039637 82 MLAYRTMVDMHRKG 95 (159)
Q Consensus 82 ~~a~~~~~~m~~~g 95 (159)
++|...|++..+..
T Consensus 96 ~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 96 KGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998753
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.83 E-value=9.7e-08 Score=56.18 Aligned_cols=94 Identities=7% Similarity=-0.026 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (159)
.+-.+...+.+.|++++|...|++..+. .| +...|..+-.++...|++++|+..+++..+.. +-+...+..+...|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455666777888888888888888774 34 46677777788888888888888888887754 23566777888888
Q ss_pred HccCCHHHHHHHHHHHHh
Q 039637 111 GKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 111 ~~~g~~~~a~~~~~~~~~ 128 (159)
...|++++|...+++...
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888887775
No 146
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=5.9e-08 Score=60.67 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=92.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCA-YCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKM 80 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 80 (159)
..+.+.|++++|.+.|+...+..+ +...+..+... +.+.++..++...+++..+. .|+ ...+..+..++...|+
T Consensus 48 ~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 48 DCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGR 123 (176)
T ss_dssp HHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 467889999999999998876544 44444333222 22333445578889888874 464 6788889999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 81 YMLAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
+++|...++++.+....+ +...+..+...+...|+.++|...|++...
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999865332 356888999999999999999999987653
No 147
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.82 E-value=2.8e-07 Score=73.48 Aligned_cols=112 Identities=13% Similarity=0.023 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
|...|.-++.++.+.|++++|.+.|....+.. ++....+.+..+|++.+++++...+. + .++...+..+..
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGD 1203 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHH
Confidence 34444444555555555555555554433321 22222223444444444444322221 1 234444555666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.|...|++++|..+|... ..|..+...|++.|++++|.+.+
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666666666666653 25666667777777776666554
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=1.9e-07 Score=56.87 Aligned_cols=89 Identities=8% Similarity=-0.021 Sum_probs=78.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~ 81 (159)
..+.+.|++++|...|+...+..+. +...|..+..++.+.|++++|...|++..+. .| +...+..+..++...|++
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHcCCH
Confidence 4577899999999999999887665 8899999999999999999999999999885 35 467788899999999999
Q ss_pred HHHHHHHHHHHHc
Q 039637 82 MLAYRTMVDMHRK 94 (159)
Q Consensus 82 ~~a~~~~~~m~~~ 94 (159)
++|...|++..+.
T Consensus 106 ~~A~~~~~~al~~ 118 (148)
T 2vgx_A 106 AEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 149
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=3e-07 Score=59.69 Aligned_cols=126 Identities=10% Similarity=0.067 Sum_probs=94.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHh------------------cCChHHHHHHHHHhHhcCCC
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDV--VLLNSMLCAYCR------------------TGDMESVMHVMRKLDELAIS 62 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~------------------~~~~~~a~~~~~~m~~~~~~ 62 (159)
.+|.+.|++++|.+.|+.+.+..+.... ..+-.+..++.+ .|++++|...|++..+. .
T Consensus 49 ~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~ 126 (225)
T 2yhc_A 49 YAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--Y 126 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--C
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--C
Confidence 4678899999999999999887655221 244444455443 57899999999999884 3
Q ss_pred CChh-hH-----------------HHHHHHHHccChHHHHHHHHHHHHHcCCC-C-cHHHHHHHHHHHHccCCHHHHHHH
Q 039637 63 PDYN-TF-----------------HILIKYFCKEKMYMLAYRTMVDMHRKGHQ-P-EEELCSSLIFHLGKMRAHSEALSV 122 (159)
Q Consensus 63 ~~~~-~~-----------------~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~a~~~ 122 (159)
|+.. .+ ..+...+.+.|++++|...|+++.+.... | ....+..+..+|.+.|+.++|...
T Consensus 127 P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 127 PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 5532 22 23455688899999999999999976321 1 135678899999999999999999
Q ss_pred HHHHHhCC
Q 039637 123 YNMLRYSK 130 (159)
Q Consensus 123 ~~~~~~~~ 130 (159)
++.+...+
T Consensus 207 ~~~l~~~~ 214 (225)
T 2yhc_A 207 AKIIAANS 214 (225)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhC
Confidence 99888643
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.78 E-value=6.3e-08 Score=60.38 Aligned_cols=115 Identities=9% Similarity=0.009 Sum_probs=91.7
Q ss_pred HhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHccCCH--H
Q 039637 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH-LGKMRAH--S 117 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~ 117 (159)
...|++++|...+.+..+.. +.+...+..+..++...|++++|...+.+..+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45788999999999988753 2356788889999999999999999999998764 3466778888888 7789998 9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 118 EALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+|...+++..... +.+...+..+...|...|++++|...|
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 138 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELW 138 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHH
Confidence 9999999888643 345778889999999999999999876
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.78 E-value=1.9e-07 Score=67.11 Aligned_cols=122 Identities=12% Similarity=-0.019 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC----------------hhhHHHHHHHHHccChHHHHHHHHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----------------YNTFHILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
...|..+...+.+.|++++|...|.+..+. .|+ ...|..+..++.+.|++++|+..+++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345666666777777777777777776653 232 35666666777777777777777777766
Q ss_pred cCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 94 KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 94 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
.. +.+...+..+..+|...|++++|...|++..... +-+..++..+..++.+.++.++|.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 53 2355666667777777777777777777666432 223445666666666666666554
No 152
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=2e-07 Score=62.88 Aligned_cols=127 Identities=9% Similarity=-0.024 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHH-
Q 039637 27 KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCS- 104 (159)
Q Consensus 27 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~- 104 (159)
+.+...+..+...+.+.|++++|...|++..+. .| +...+..+...+...|++++|...+++..... |+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHH
Confidence 335677888888999999999999999999884 45 45778889999999999999999999887653 4544333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.....+.+.++.+.|...+++.... .+.+...+..+...|...|++++|...|
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 2333466778888899999988763 3457888999999999999999999876
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.77 E-value=6.8e-07 Score=52.46 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=46.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhcCCCCCh----hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc---HHHHHHHHH
Q 039637 36 MLCAYCRTGDMESVMHVMRKLDELAISPDY----NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE---EELCSSLIF 108 (159)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~ 108 (159)
+...+.+.|++++|...|++..+.. |+. ..+..+..++...|++++|...+++..+... .+ +..+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHH
Confidence 3344555555666666655555432 222 2444455555555666666666655554321 11 344455555
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 039637 109 HLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~ 128 (159)
++.+.|++++|...|+.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666665554
No 154
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=1.4e-07 Score=64.12 Aligned_cols=152 Identities=9% Similarity=-0.018 Sum_probs=106.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCC---C--ChhhHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK----YDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS---P--DYNTFHILI 72 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~ll 72 (159)
..|.+.|++++|.+.|++..+. |-.. -..+++.+...|.+ |++++|+..|++..+.... + ...++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 4567789999999999876532 2111 24578888999988 9999999999988763111 1 145778888
Q ss_pred HHHHccChHHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCH--HHHHHHHH
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRK----GHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS--MCK--ALHEKILH 143 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~~~~~l~~ 143 (159)
..+.+.|++++|+..+++..+. +..++ ...+..+..++...|++++|...|++.. .... ... .....++.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~ 241 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQ 241 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999998853 22122 2356667778888899999999999887 3221 121 23445555
Q ss_pred HHHhcCcHHHHhhh
Q 039637 144 ILISGKLLKDAYIV 157 (159)
Q Consensus 144 ~~~~~g~~~~A~~~ 157 (159)
.+ ..|+.+.+.++
T Consensus 242 ~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 242 AY-DEQDEEQLLRV 254 (307)
T ss_dssp HH-HTTCHHHHHHH
T ss_pred HH-HhcCHHHHHHH
Confidence 55 56777666553
No 155
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.76 E-value=1.4e-06 Score=51.13 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=76.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC----hhhHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDV---VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYF 75 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~ 75 (159)
..+.+.|++++|.+.|+...+..+. +. ..+..+..++.+.|++++|...|++..+.. |+ ...+..+..++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHH
Confidence 4577899999999999999886654 33 578888999999999999999999998853 44 45677788899
Q ss_pred HccChHHHHHHHHHHHHHcC
Q 039637 76 CKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g 95 (159)
...|++++|...++++.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999998763
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.76 E-value=1.2e-06 Score=51.99 Aligned_cols=90 Identities=12% Similarity=0.051 Sum_probs=78.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
..+...|++++|...|+...+..+. +...|..+..++...|++++|...+.+..+.. +.+...+..+..++...|+++
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 94 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYD 94 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhhHH
Confidence 4678899999999999999887655 78899999999999999999999999998853 234678888999999999999
Q ss_pred HHHHHHHHHHHc
Q 039637 83 LAYRTMVDMHRK 94 (159)
Q Consensus 83 ~a~~~~~~m~~~ 94 (159)
+|...+.+..+.
T Consensus 95 ~A~~~~~~a~~~ 106 (137)
T 3q49_B 95 EAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 157
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=8.9e-07 Score=59.71 Aligned_cols=124 Identities=6% Similarity=0.053 Sum_probs=93.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhcCC-CCChh----hHHHHHHHHHccChHHHHHHHHHHHHHcCCC-Cc----HHHHH
Q 039637 35 SMLCAYCRTGDMESVMHVMRKLDELAI-SPDYN----TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQ-PE----EELCS 104 (159)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~ 104 (159)
..+..+.+.|++++|..++++..+... .|+.. .+..+...+...+++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778899999999999999887422 22221 2334666677788999999999999874222 22 33689
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRY----S-KRSMC-KALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+...|...|++++|...|++... . +..+. ..++..+...|.+.|++++|.+.+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999998773 1 22222 347889999999999999998875
No 158
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.75 E-value=1.1e-07 Score=57.67 Aligned_cols=128 Identities=9% Similarity=-0.091 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCC-CC----hhhHHHHHHHHHccChHHHHHHHHHHHHHc----CCCC-cH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAIS-PD----YNTFHILIKYFCKEKMYMLAYRTMVDMHRK----GHQP-EE 100 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~ 100 (159)
.++..+...+...|++++|...+.+..+..-. ++ ..++..+...+...|++++|.+.+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34556666666666676666666665542110 11 134555666666667777766666665532 1111 13
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 101 ELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRS-MCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
..+..+...+...|++++|...+++.... +.+ ....++..+...+...|++++|.+.+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34555666666667777776666654421 111 11234555666666667766666554
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.2e-06 Score=52.44 Aligned_cols=103 Identities=10% Similarity=-0.065 Sum_probs=82.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHcc
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYD---VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKE 78 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~ 78 (159)
..+.+.|++++|.+.|+...+..+. + ...|..+...+...|++++|...+.+..+. .| +...+..+..++...
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~ 112 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYRRSQALEKL 112 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHHHHHHHHHc
Confidence 4577889999999999999876543 2 678899999999999999999999998885 34 467788888999999
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
|++++|...+++..+.. +.+...+..+...
T Consensus 113 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 113 GRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp TCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 99999999999998763 2244455444443
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.74 E-value=8.6e-08 Score=60.72 Aligned_cols=126 Identities=11% Similarity=-0.055 Sum_probs=95.0
Q ss_pred hHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc----CCCC--ChhhHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEA----KYDK-YDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISP--DYNTFHIL 71 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~l 71 (159)
..+...|++++|.+.+++..+ .+.. ....++..+...+...|++++|.+.+.+..+. +-.| ....+..+
T Consensus 34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 113 (203)
T 3gw4_A 34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEV 113 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 457788999999999998764 2222 24567888999999999999999999887763 1112 13456778
Q ss_pred HHHHHccChHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
...+...|++++|...+++..+. +... ...++..+...+...|++++|...+++...
T Consensus 114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88899999999999999887742 2111 133457888899999999999999986653
No 161
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.74 E-value=7.7e-07 Score=71.03 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
+..+|..+..++.+.|++++|.+.|.+. -|...|..+..+|.+.|++++|.+++....+.. +++...+.++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 5677888888888889999998888552 566778888888999999999999888777654 33333445888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhhC
Q 039637 109 HLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVVK 159 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (159)
+|++.+++++...+. . .++...|..+...|...|++++|..+|+
T Consensus 1176 aYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 888888888544432 2 3455667778899999999999988763
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.73 E-value=8e-08 Score=69.42 Aligned_cols=120 Identities=13% Similarity=0.039 Sum_probs=93.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 039637 35 SMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKM 113 (159)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 113 (159)
.+...+.+.|++++|.+.|++..+. .|+ ...|..+..++.+.|++++|++.+++..+.. +.+...+..+..+|.+.
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3344567889999999999999885 454 7888899999999999999999999999864 34678899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCcHHHHhhhh
Q 039637 114 RAHSEALSVYNMLRYSKRSMCKALHEKILHI--LISGKLLKDAYIVV 158 (159)
Q Consensus 114 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~ 158 (159)
|++++|...|++...... .+...+..+..+ +.+.|++++|.+.+
T Consensus 88 g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~ 133 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp TCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999998876432 122344444444 88899999998765
No 163
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.73 E-value=8e-08 Score=58.27 Aligned_cols=126 Identities=16% Similarity=0.050 Sum_probs=95.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-CCC----hhhHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDK-YD----VVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPD----YNTFHILI 72 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll 72 (159)
..|...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...+++..+..- .++ ...+..+.
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 96 (164)
T 3ro3_A 17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 96 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 4577889999999999987643211 11 24788899999999999999999998775311 111 35677788
Q ss_pred HHHHccChHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..+...|++++|.+.+.+..+. +..+ ....+..+...|...|++++|...+++...
T Consensus 97 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 97 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8899999999999999887743 2111 245677888999999999999999987654
No 164
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=4e-07 Score=61.43 Aligned_cols=124 Identities=9% Similarity=-0.015 Sum_probs=95.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHhHhc-CCCCC-----hhhHHHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYD---KYD--VVLLNSMLCAYCRTGDMESVMHVMRKLDEL-AISPD-----YNTFHILI 72 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~ll 72 (159)
.+...|++++|.+.++...+... .+. ..+|+.+...|...|++++|...|++..+. ...|+ ..++..+.
T Consensus 124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH
Confidence 45677899999999998765321 112 458999999999999999999999998732 01222 25788899
Q ss_pred HHHHccChHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCCHHHH-HHHHHHHH
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEA-LSVYNMLR 127 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 127 (159)
.+|...|++++|+..+++..+. +... -..++..+...|.+.|+.++| ...+++..
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999999999987743 1111 256788899999999999999 77677554
No 165
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.70 E-value=1.1e-06 Score=62.61 Aligned_cols=148 Identities=14% Similarity=0.029 Sum_probs=102.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHcc-------
Q 039637 7 RSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKE------- 78 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~------- 78 (159)
..|+.++|.+.++......+. +..++..+...|.+.|++++|...+.+..+. .|+ ..++..+..+|...
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp -----CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhH
Confidence 346788899999888776554 7788999999999999999999999998874 454 45555555554322
Q ss_pred ------------ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-
Q 039637 79 ------------KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA--LHEKILH- 143 (159)
Q Consensus 79 ------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~- 143 (159)
+..+.|...++...+.. +.+..++..+...|...|++++|...|++.......+... .+..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~ 380 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF 380 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34567778887777654 3456678889999999999999999999988654433321 2222222
Q ss_pred HHHhcCcHHHHhhhh
Q 039637 144 ILISGKLLKDAYIVV 158 (159)
Q Consensus 144 ~~~~~g~~~~A~~~~ 158 (159)
.+...|+.++|...|
T Consensus 381 ~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 381 QLYQMKCEDKAIHHF 395 (472)
T ss_dssp HHHTSSCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 234678888887755
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.69 E-value=5.8e-07 Score=52.79 Aligned_cols=89 Identities=10% Similarity=-0.023 Sum_probs=69.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~ 81 (159)
..+.+.|++++|...|+...+..+. +...|..+..++.+.|++++|+..|++..+. .| +...+..+..++...|++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 3567788888888888888876654 7778888888888888888888888888774 35 356677777888888888
Q ss_pred HHHHHHHHHHHHc
Q 039637 82 MLAYRTMVDMHRK 94 (159)
Q Consensus 82 ~~a~~~~~~m~~~ 94 (159)
++|+..+++..+.
T Consensus 102 ~~A~~~~~~al~~ 114 (121)
T 1hxi_A 102 NAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887754
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.5e-06 Score=61.28 Aligned_cols=156 Identities=9% Similarity=-0.029 Sum_probs=112.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-CCCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYD----------------VVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPDY 65 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~ 65 (159)
..+.+.|++++|.+.|....+.....+ ..++..+...|.+.|++++|.+.+.+....-- .++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 346788999999999999887643311 12477889999999999999999998775311 1221
Q ss_pred ----hhHHHHHHHHHccChHHHHHHHHHHHHH----cCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC
Q 039637 66 ----NTFHILIKYFCKEKMYMLAYRTMVDMHR----KGHQPE-EELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRS 132 (159)
Q Consensus 66 ----~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~ 132 (159)
.+.+.+-..+...|+++.+.+++..... .+..+. ..++..+...|...|++++|..+++..... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1223333344556889999998887763 333333 457788999999999999999999877532 112
Q ss_pred C-CHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 133 M-CKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 133 ~-~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+ ...++..+...|...|++++|...+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 2 2457888999999999999998765
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.66 E-value=7.9e-07 Score=63.89 Aligned_cols=123 Identities=9% Similarity=0.052 Sum_probs=99.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYD--------------VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTF 68 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 68 (159)
..|.+.|++++|...|++..+..+... ..+|..+..+|.+.|++++|+..+++..+.. ..+...|
T Consensus 276 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~ 354 (457)
T 1kt0_A 276 TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGL 354 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHH
Confidence 457889999999999999887654422 6889999999999999999999999999853 2356788
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHH-HHHHHH
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALS-VYNMLR 127 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~~~ 127 (159)
..+-.++...|++++|+..|++.++.. +-+...+..+..++.+.++.+++.+ .+..|.
T Consensus 355 ~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 355 YRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999763 2356788889999999999888774 455543
No 169
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.66 E-value=9.8e-07 Score=61.78 Aligned_cols=124 Identities=11% Similarity=0.032 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhc--------------CCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcC
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDEL--------------AISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (159)
..|..+...+.+.|++++|+..|++..+. ...| +...|..+..++.+.|++++|++.+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45777888999999999999999988761 0222 35778888899999999999999999999764
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhh
Q 039637 96 HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYI 156 (159)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (159)
+.+...+..+..+|...|++++|...|++..... +.+...+..+...+.+.++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788899999999999999999999887643 3367777888888888888887764
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.64 E-value=1.6e-07 Score=54.74 Aligned_cols=87 Identities=7% Similarity=-0.099 Sum_probs=53.3
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 7 RSGCFEETKQLAGDFEAKYD--KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
..|++++|.+.|++..+.++ +.+...|..+..+|.+.|++++|...|++..+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35667777777777766531 1245566777777777777777777777776642 12345566666677777777777
Q ss_pred HHHHHHHHHc
Q 039637 85 YRTMVDMHRK 94 (159)
Q Consensus 85 ~~~~~~m~~~ 94 (159)
...+.+..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766654
No 171
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.64 E-value=5e-06 Score=59.65 Aligned_cols=136 Identities=7% Similarity=-0.123 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHhHhcCCCCChhhHHHHHHH-H--HccChHH
Q 039637 10 CFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRT----GDMESVMHVMRKLDELAISPDYNTFHILIKY-F--CKEKMYM 82 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~ 82 (159)
+.++|.+.|+...+.|+. +...+..+...|... +++++|...|++.. . -+...+..+-.. + ...++++
T Consensus 194 ~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHH
T ss_pred cHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHH
Confidence 566666666666555543 444444444444433 45666666665554 2 223333333333 2 3355666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR-----AHSEALSVYNMLRYSKRSMCKALHEKILHILIS----GKLLKD 153 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 153 (159)
+|.++|++..+.| ++..+..|...|. .| +.++|..+|++.. +-+......+-..|.. ..+.++
T Consensus 269 ~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 269 QMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 6666666655544 3334444444444 33 5566666555444 1233344444444444 225555
Q ss_pred Hhhhh
Q 039637 154 AYIVV 158 (159)
Q Consensus 154 A~~~~ 158 (159)
|...|
T Consensus 341 A~~~~ 345 (452)
T 3e4b_A 341 ALDHL 345 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 172
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.62 E-value=7.2e-07 Score=64.64 Aligned_cols=125 Identities=13% Similarity=0.061 Sum_probs=92.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHhHhc-----CC-CCC-hhhHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAK-----YD-KYD-VVLLNSMLCAYCRTGDMESVMHVMRKLDEL-----AI-SPD-YNTFH 69 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~-~~~~~ 69 (159)
.+...|++++|..++++..+. |. .|+ ..+++.|..+|...|++++|+.++.+..+. |- -|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355779999999998876532 32 233 357899999999999999999998887653 21 233 46788
Q ss_pred HHHHHHHccChHHHHHHHHHHHHH-----cCC-CC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 70 ILIKYFCKEKMYMLAYRTMVDMHR-----KGH-QP-EEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~-----~g~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.|...|..+|++++|+.++++.++ .|. .| ...+.+.+-.++.+.+.+++|..++..++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998887763 231 12 344556777888888999999999988874
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.62 E-value=9.8e-07 Score=61.78 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=94.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-Ch
Q 039637 3 SAFCRSGCFEETKQLAGDFEA----------------KYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DY 65 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~ 65 (159)
..+.+.|++++|.+.|++..+ ..+ .+..+|..+..+|.+.|++++|+..+++..+. .| +.
T Consensus 231 ~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~ 307 (370)
T 1ihg_A 231 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNT 307 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhH
Confidence 457789999999999998875 221 25678999999999999999999999999984 45 46
Q ss_pred hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 039637 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALS 121 (159)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (159)
..+..+-.++...|++++|++.+++..+.. +.+...+..+...+.+.++.+++.+
T Consensus 308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 308 KALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999998864 2366777788888888888777764
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.59 E-value=1.8e-07 Score=54.47 Aligned_cols=105 Identities=8% Similarity=-0.060 Sum_probs=76.9
Q ss_pred hcCChHHHHHHHHHhHhcCC-CC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 039637 42 RTGDMESVMHVMRKLDELAI-SP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 119 (159)
..|++++|+..|++..+.+. .| +...+..+..++...|++++|+..+++..+.. +-++.++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46889999999999988531 13 35778888899999999999999999999874 34677888999999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 039637 120 LSVYNMLRYS-KRSMCKALHEKILHILIS 147 (159)
Q Consensus 120 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 147 (159)
...+++.... ...|+...|...+..|.+
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 9999987753 223334444445544443
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=2.4e-06 Score=57.44 Aligned_cols=97 Identities=8% Similarity=-0.145 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
+...+..+...+.+.|++++|...|.+..+. .| +...|..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5677888999999999999999999999885 45 57788889999999999999999999998763 34677888999
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 039637 108 FHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.+|...|++++|...|++...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.56 E-value=1.3e-06 Score=53.65 Aligned_cols=99 Identities=10% Similarity=-0.036 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhc--------CC--------CC-ChhhHHHHHHHHHccChHHHHHHHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDEL--------AI--------SP-DYNTFHILIKYFCKEKMYMLAYRTMVDMH 92 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~~--------~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (159)
...+......+.+.|++++|+..|.+.... .. .| +...|..+..++.+.|++++|+..+.+.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 455667777788888888888888777663 00 11 23567777888888888888888888888
Q ss_pred HcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 93 RKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 93 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
+.. +.++..|..+..+|...|++++|...|++....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 764 346777888888888888888888888877753
No 177
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.55 E-value=2e-06 Score=64.68 Aligned_cols=124 Identities=10% Similarity=0.019 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhc-CCCCChhhHHHHHHHHHc-cChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDEL-AISPDYNTFHILIKYFCK-EKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
+|...++...+.|..+.|..+|.+..+. +. ++...|......-.+ .++.+.|.++|+..++. .+-+...+...+..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 4555555555555666666666665543 11 111222211111112 23355666666655554 22234444555555
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 110 LGKMRAHSEALSVYNMLRYSKRSM--CKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 110 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
....|+.+.|..+|++......++ ....|...+..=.+.|+.+.+..+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555566666666666555432211 234555555555566666655554
No 178
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.51 E-value=5.3e-06 Score=59.51 Aligned_cols=120 Identities=8% Similarity=-0.050 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcC---ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc----ChHHHHHHHHHHHHHcCCCCcHHH
Q 039637 30 VVLLNSMLCAYCRTG---DMESVMHVMRKLDELAISPDYNTFHILIKYFCKE----KMYMLAYRTMVDMHRKGHQPEEEL 102 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~g~~~~~~~ 102 (159)
+..+..+...|.+.| +.++|+..|.+..+.|. ++...+..+-..|... +++++|.++|++.. .| ++..
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a 250 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPAS 250 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHH
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHH
Confidence 338888888898999 89999999999988763 4444445566677555 78999999999987 33 4456
Q ss_pred HHHHHHH-H--HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----cHHHHhhhh
Q 039637 103 CSSLIFH-L--GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGK-----LLKDAYIVV 158 (159)
Q Consensus 103 ~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~ 158 (159)
+..+... | ...++.++|..+|++....+ +...+..+-..|. .| +.++|...|
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 6666666 4 56899999999999988766 5566677777776 55 899998876
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.51 E-value=3.2e-06 Score=51.87 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=76.6
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK--------YD---------KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY 65 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 65 (159)
..+.+.|++++|.+.|....+. .+ +.+...|..+..+|.+.|++++|+..+.+..+.. +.+.
T Consensus 19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~ 97 (162)
T 3rkv_A 19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNE 97 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Ccch
Confidence 4678899999999999987764 11 1144688999999999999999999999998853 2346
Q ss_pred hhHHHHHHHHHccChHHHHHHHHHHHHHcC
Q 039637 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (159)
..|..+..++...|++++|...|.+..+..
T Consensus 98 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 98 KALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 788889999999999999999999998863
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.50 E-value=9.5e-07 Score=61.03 Aligned_cols=94 Identities=9% Similarity=-0.105 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh------------------hHHHHHHHHHccChHHHHHHHHHHHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN------------------TFHILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
.+..+...+.+.|++++|...|.+.... .|+.. .|..+..++.+.|++++|+..+++.++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555555442 23322 455555556666666666666666555
Q ss_pred cCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 94 KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 94 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.. +.+...+..+..+|...|++++|...|++...
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 22445555566666666666666666665543
No 181
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.48 E-value=1e-05 Score=55.19 Aligned_cols=147 Identities=7% Similarity=-0.094 Sum_probs=117.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh------
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDME--SVMHVMRKLDELAISPDYNTFHILIKYFCKEKM------ 80 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~------ 80 (159)
+++++++++++.+.+..++ |..+|+--.-.+.+.|.++ ++++.++++.+... -|...|+.-.......+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 7899999999999988776 9999999888888889888 99999999998653 466778766666666666
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 81 YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE-ALSVYNMLRYSK--RSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
++++++.+.+..... +-|...|+-+-..+.+.|+... +..+.+++...+ .+.+...+..+...|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 889999999988864 3578888888888888777444 445666655422 245788899999999999999999987
Q ss_pred h
Q 039637 158 V 158 (159)
Q Consensus 158 ~ 158 (159)
+
T Consensus 281 ~ 281 (306)
T 3dra_A 281 Y 281 (306)
T ss_dssp H
T ss_pred H
Confidence 6
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.7e-06 Score=49.25 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
+...|..+...+.+.|++++|...|.+..+.. +.+...+..+..++...|++++|++.+++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455555566666666666666666655532 12344455555555556666666666655554
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.45 E-value=6.8e-06 Score=50.55 Aligned_cols=109 Identities=14% Similarity=0.031 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC--------h-----hhHHHHHHHHHccChHHHHHHHHHHHHHc---
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD--------Y-----NTFHILIKYFCKEKMYMLAYRTMVDMHRK--- 94 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--- 94 (159)
..+......+.+.|++++|+..|++..+. .|+ . ..|+.+-.++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34556667778888999999988888873 344 1 27888888899999999999999888874
Q ss_pred --CCCC-cHHHH----HHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 039637 95 --GHQP-EEELC----SSLIFHLGKMRAHSEALSVYNMLRY-----SKRSMCKALHEKI 141 (159)
Q Consensus 95 --g~~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 141 (159)
...| +...| .....++...|++++|...|++... .++.+........
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 1134 45677 7888899999999999999997753 3444444443333
No 184
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.45 E-value=5.9e-06 Score=62.20 Aligned_cols=122 Identities=10% Similarity=0.030 Sum_probs=83.3
Q ss_pred HhcCCHHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHH
Q 039637 6 CRSGCFEETKQLAGDFEAK-YD-KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 83 (159)
.+.|+.+.|..+|....+. +. .+......+.+... ..++.+.|..+|+...+. ..-+...+...++.....|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 4567788888888888765 21 22333333333322 134588899998888875 33345556677777777888889
Q ss_pred HHHHHHHHHHcCCCC--cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 84 AYRTMVDMHRKGHQP--EEELCSSLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 84 a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
|..+|+........+ ....|...+..-.+.|+.+.+.++.+++...
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998888754321 3467788888888889999999998888864
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.44 E-value=7.3e-06 Score=49.21 Aligned_cols=117 Identities=9% Similarity=-0.010 Sum_probs=94.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc----cC
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK----EK 79 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~ 79 (159)
+....+++++|.+.|++..+.|.. +.. +-..|...+..++|.+.|++..+.| +...+..|-..|.. .+
T Consensus 4 G~g~~~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CcCCccCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCc
Confidence 344567899999999999888733 333 7777777788899999999998864 56777778888877 78
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCC
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK----MRAHSEALSVYNMLRYSKR 131 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~ 131 (159)
++++|.++|++..+.| ++..+..|...|.. .++.++|..+|++..+.|.
T Consensus 76 d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 76 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999999999876 45677778888888 8999999999999887654
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.44 E-value=2.4e-06 Score=61.90 Aligned_cols=120 Identities=8% Similarity=-0.052 Sum_probs=90.4
Q ss_pred HHHhcCChHHHHHHHHHhHhcC---CCCC----hhhHHHHHHHHHccChHHHHHHHHHHHHH-----cC-CCC-cHHHHH
Q 039637 39 AYCRTGDMESVMHVMRKLDELA---ISPD----YNTFHILIKYFCKEKMYMLAYRTMVDMHR-----KG-HQP-EEELCS 104 (159)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~---~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g-~~~-~~~~~~ 104 (159)
.+...|++++|+.++++..+.. +-|+ ..+++.|...|..+|++++|+.++++.++ .| ..| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998877541 2222 47788999999999999999999988763 23 123 345788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRY-----SK-RSMC-KALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~-----~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.|...|...|++++|..++++... .| ..|+ ..+...+-.++...+.+++|+.++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886653 12 2233 335567778888889999988776
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.43 E-value=6.4e-06 Score=50.66 Aligned_cols=91 Identities=9% Similarity=-0.041 Sum_probs=75.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHhcCChHHHHHHHHHhHhc-----CCCCC-h
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKY------DV-----VLLNSMLCAYCRTGDMESVMHVMRKLDEL-----AISPD-Y 65 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~ 65 (159)
..+.+.|++++|.+.|++..+..+.. +. ..|+.+..++.+.|++++|+..+++.++. .+.|+ .
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~ 98 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 98 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH
Confidence 35678899999999999988765441 23 38999999999999999999999999883 11676 4
Q ss_pred hhH----HHHHHHHHccChHHHHHHHHHHHHH
Q 039637 66 NTF----HILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 66 ~~~----~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
..| ...-.++...|++++|+..|++.++
T Consensus 99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 99 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 677 8888999999999999999999875
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.42 E-value=8.5e-07 Score=61.27 Aligned_cols=123 Identities=7% Similarity=-0.059 Sum_probs=74.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCH-----------------HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-C
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDV-----------------VLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-D 64 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~ 64 (159)
..+.+.|++++|...|+...+..+. +. .+|..+..+|.+.|++++|+..+.+..+. .| +
T Consensus 187 ~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~ 263 (338)
T 2if4_A 187 NSLFKEEKLEEAMQQYEMAIAYMGD-DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKN 263 (338)
T ss_dssp HHTCSSSCCHHHHHHHHHHHHHSCH-HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcc-chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 3566789999999999997765332 22 27889999999999999999999999885 35 5
Q ss_pred hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-HccCCHHHHHHHHHHHHhC
Q 039637 65 YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL-GKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~ 129 (159)
...|..+..++...|++++|...|++..+.. +-+...+..+.... ...+..+.+...|..+...
T Consensus 264 ~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 264 PKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6788899999999999999999999987643 22444555555553 3346778888888888643
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.4e-05 Score=56.41 Aligned_cols=157 Identities=12% Similarity=0.003 Sum_probs=110.9
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHhcCChHHHHHHHHHhHhc----CCCCC-hhhHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDK-YDV----VLLNSMLCAYCRTGDMESVMHVMRKLDEL----AISPD-YNTFHIL 71 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~l 71 (159)
...|.+.|++++|.+.+....+.-.. ++. .+.+.+-..+...|+++.+..++.+.... +..+. ..++..+
T Consensus 62 ~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 62 GQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 46788999999999999876542111 122 23344444555678999999998887643 22232 4567788
Q ss_pred HHHHHccChHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHH
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHRK----GHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYS----KRSMC--KALHEK 140 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~ 140 (159)
...+...|++++|..++.+.... +..+ ...++..++..|...|++++|...+++.... ..++. ...+..
T Consensus 142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 89999999999999999988743 1112 3557888999999999999999999876531 22222 245667
Q ss_pred HHHHHHhcCcHHHHhhhh
Q 039637 141 ILHILISGKLLKDAYIVV 158 (159)
Q Consensus 141 l~~~~~~~g~~~~A~~~~ 158 (159)
+...+...|++++|...|
T Consensus 222 ~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 777888889999987654
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.32 E-value=1.8e-05 Score=45.57 Aligned_cols=80 Identities=9% Similarity=-0.004 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHH
Q 039637 13 ETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMH 92 (159)
Q Consensus 13 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (159)
+|.+.|+...+..+. +...|..+...+.+.|++++|...|++..+.. ..+...|..+..++...|++++|...+++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466777777766554 67788888888888888888888888887743 1235667777788888888888888888776
Q ss_pred Hc
Q 039637 93 RK 94 (159)
Q Consensus 93 ~~ 94 (159)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.32 E-value=4.6e-06 Score=51.23 Aligned_cols=99 Identities=13% Similarity=0.036 Sum_probs=73.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHhHhcCCCCC-hhhHHHHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDM----------ESVMHVMRKLDELAISPD-YNTFHILIKY 74 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~~~~~-~~~~~~ll~~ 74 (159)
-+.+++++|.+.++...+..+. +...|+.+-.++.+.+++ ++|+..|++..+ +.|+ ...|..+-.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 4557789999999998887766 888888888888887765 488888888887 4564 5677778888
Q ss_pred HHccC-----------hHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 75 FCKEK-----------MYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 75 ~~~~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
|...| ++++|++.|++.++. .|+...|...+..
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 87764 778888888777764 4555555444443
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.19 E-value=5.2e-05 Score=41.28 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4455556666666666666666666665532 1234455555556666666666666666655542 1233344444433
Q ss_pred H
Q 039637 110 L 110 (159)
Q Consensus 110 ~ 110 (159)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.7e-05 Score=44.92 Aligned_cols=93 Identities=11% Similarity=-0.011 Sum_probs=63.0
Q ss_pred ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC------HHH
Q 039637 64 DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC------KAL 137 (159)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~ 137 (159)
+...+..+...+...|++++|.+.+++..+.. +.++..+..+..++.+.|++++|...+++..... +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 34556667777777888888888887777653 3356677777777888888888888887776532 222 455
Q ss_pred HHHHHHHHHhcCcHHHHhhhh
Q 039637 138 HEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 138 ~~~l~~~~~~~g~~~~A~~~~ 158 (159)
+..+..++...|+.++|...+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 666667777777766665543
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.16 E-value=5.8e-05 Score=41.08 Aligned_cols=82 Identities=12% Similarity=-0.045 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039637 65 YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (159)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (159)
...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...+++..... +.+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778888999999999999999998764 3467788899999999999999999999887643 3456666666666
Q ss_pred HHhc
Q 039637 145 LISG 148 (159)
Q Consensus 145 ~~~~ 148 (159)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.11 E-value=3.9e-05 Score=44.08 Aligned_cols=100 Identities=7% Similarity=-0.072 Sum_probs=74.2
Q ss_pred HHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 48 SVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 48 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
+++..|++..+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677788877642 2346778888899999999999999999999864 3467788899999999999999999999876
Q ss_pred hCC-CCCCHHHHHHHHHHHHhcC
Q 039637 128 YSK-RSMCKALHEKILHILISGK 149 (159)
Q Consensus 128 ~~~-~~~~~~~~~~l~~~~~~~g 149 (159)
... ...+......+...+.+.+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhc
Confidence 532 1234444445544444433
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.11 E-value=0.00018 Score=43.05 Aligned_cols=105 Identities=11% Similarity=-0.110 Sum_probs=84.7
Q ss_pred cCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc----cCCHHH
Q 039637 43 TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGK----MRAHSE 118 (159)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 118 (159)
.+++++|...|++..+.|. |+.. |-..|...+..++|.++|++..+.| ++..+..|...|.. .++.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 3568899999999998872 3333 6666777778888999999999875 55677778888887 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCcHHHHhhhh
Q 039637 119 ALSVYNMLRYSKRSMCKALHEKILHILIS----GKLLKDAYIVV 158 (159)
Q Consensus 119 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 158 (159)
|..+|++..+.+ +......+-..|.. .++.++|...|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 999999988764 45677788888888 89999998876
No 197
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.05 E-value=0.00098 Score=45.46 Aligned_cols=137 Identities=7% Similarity=-0.080 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 10 CFEETKQLAGDFEAKYDKYDVVLLNSMLCAY----CRT---GDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
++++++++++.+...+++ +..+|+.--..+ ... +++++++.+++++.+.. .-|...|+.--....+.+.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC
Confidence 555555555555554444 444444333333 333 45555555555555532 224455554444444445554
Q ss_pred --HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 83 --LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA------HSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 83 --~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
++++++.++.+... -|...|+.-...+...+. ++++...+++..... +-|...|+..-..+.+.|+
T Consensus 162 ~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 162 DAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 55555555555432 344455444444444444 555555555554422 2344555555555555554
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=0.00059 Score=50.46 Aligned_cols=135 Identities=10% Similarity=-0.008 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD----------MESVMHVMRKLDELAISPDYNTFHILIKYFCKE 78 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 78 (159)
...++|++.++.+.+.++. +..+|+.--.++...|+ ++++++.++++.+.. .-+..+|+.--.++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3456789999999987776 77888877777777776 899999999999854 24578888888888888
Q ss_pred C--hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 039637 79 K--MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRYSKRSMCKALHEKILHILIS 147 (159)
Q Consensus 79 ~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (159)
+ +++++++.++++.+.. +-+..+|+--...+.+.| ..+++.+.++++.... +-+...|+.....+.+
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence 8 7799999999999875 347888887777778888 8999999999888644 3466777776666665
No 199
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.95 E-value=0.00012 Score=52.28 Aligned_cols=91 Identities=5% Similarity=-0.103 Sum_probs=71.5
Q ss_pred HHHHHhcCChHHHHHHHHHhHhcC---CCCC----hhhHHHHHHHHHccChHHHHHHHHHHHHH-----cC-CCC-cHHH
Q 039637 37 LCAYCRTGDMESVMHVMRKLDELA---ISPD----YNTFHILIKYFCKEKMYMLAYRTMVDMHR-----KG-HQP-EEEL 102 (159)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~---~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g-~~~-~~~~ 102 (159)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+...|..+|++++|+.++++.+. .| ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 555678899999999999988641 2232 46788999999999999999999988773 22 223 3457
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 103 CSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7899999999999999999988665
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.93 E-value=7.9e-05 Score=41.43 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=33.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVV-LLNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
.+.+.|++++|.+.|+...+..+. +.. .|..+..++.+.|++++|...|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666655433 445 666666666666666666666666665
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.90 E-value=0.00014 Score=52.06 Aligned_cols=87 Identities=3% Similarity=-0.110 Sum_probs=68.1
Q ss_pred hcCChHHHHHHHHHhHhc---CCCCC----hhhHHHHHHHHHccChHHHHHHHHHHHHH-----cC-CCCc-HHHHHHHH
Q 039637 42 RTGDMESVMHVMRKLDEL---AISPD----YNTFHILIKYFCKEKMYMLAYRTMVDMHR-----KG-HQPE-EELCSSLI 107 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~---~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g-~~~~-~~~~~~li 107 (159)
..|++++|+.++++..+. -+-|+ ..+++.|..+|..+|++++|+.++++.++ .| ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999887753 22233 47788999999999999999999988873 23 2233 45788999
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 039637 108 FHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..|...|++++|..++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987653
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.89 E-value=0.00013 Score=40.98 Aligned_cols=63 Identities=14% Similarity=0.056 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
+...|..+...|.+.|++++|+..|++..+.. | +...|..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777777777777777777777777643 3 345666777777777777777777776654
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.85 E-value=0.00026 Score=39.70 Aligned_cols=85 Identities=9% Similarity=-0.047 Sum_probs=60.0
Q ss_pred ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHH
Q 039637 64 DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS-KRSMCKALHEKIL 142 (159)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 142 (159)
+...+..+..++...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.... ...++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 45667778888888888888888888888764 235667888888888888888888888876642 2234555555555
Q ss_pred HHHHhcC
Q 039637 143 HILISGK 149 (159)
Q Consensus 143 ~~~~~~g 149 (159)
..+.+.+
T Consensus 85 ~~l~~~~ 91 (100)
T 3ma5_A 85 DAKLKAE 91 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 5554443
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.84 E-value=0.00018 Score=51.38 Aligned_cols=91 Identities=12% Similarity=0.029 Sum_probs=71.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHhHhc-----C-CCCC-hhhH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK-----YDK-YD-VVLLNSMLCAYCRTGDMESVMHVMRKLDEL-----A-ISPD-YNTF 68 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~-~~~~ 68 (159)
..+.+.|++++|.+.+++..+. |.. |+ ..+++.+..+|...|++++|+.++.+.... | --|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 4466789999999999988643 222 22 357899999999999999999999987753 2 1233 4678
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHH
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
+.|-..|..+|++++|+.++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8899999999999999999888763
No 205
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.83 E-value=0.0024 Score=46.43 Aligned_cols=79 Identities=9% Similarity=0.050 Sum_probs=40.9
Q ss_pred ccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 77 KEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
+.+..+.|..+|+.. +.. ..+...|......-...+ +.+.|..+|+.....- +-+...+...++...+.|+.+.|.
T Consensus 298 r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345566677777666 221 123334432222222223 5777777777665422 223344455566666677777766
Q ss_pred hhh
Q 039637 156 IVV 158 (159)
Q Consensus 156 ~~~ 158 (159)
.+|
T Consensus 375 ~l~ 377 (493)
T 2uy1_A 375 ALF 377 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.83 E-value=0.00013 Score=52.16 Aligned_cols=86 Identities=9% Similarity=0.011 Sum_probs=68.2
Q ss_pred cCCHHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHhHhc-----CC-CCC-hhhHHHHHH
Q 039637 8 SGCFEETKQLAGDFEAK-----YDK-YD-VVLLNSMLCAYCRTGDMESVMHVMRKLDEL-----AI-SPD-YNTFHILIK 73 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~-~~~~~~ll~ 73 (159)
.|++++|.+++++..+. |+. |+ ..+++.|..+|...|++++|+.++++..+. |- -|+ ..+++.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 47899999999876532 332 33 357999999999999999999999998753 21 233 467889999
Q ss_pred HHHccChHHHHHHHHHHHHH
Q 039637 74 YFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~ 93 (159)
.|..+|++++|+.++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988763
No 207
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.82 E-value=0.0027 Score=44.06 Aligned_cols=147 Identities=9% Similarity=0.009 Sum_probs=109.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc-C-hHHH
Q 039637 7 RSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKE-K-MYML 83 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~-~~~~ 83 (159)
+.+..++|+++++.+...++. +..+|+.--..+...| .+++++.+++.+.... .-+..+|+.--..+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 345567899999999988776 7888998888888888 5999999999999853 23567777666666655 6 7889
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc-----
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS--------EALSVYNMLRYSKRSMCKALHEKILHILISGKL----- 150 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 150 (159)
++++++.+.+.. +-+..+|+--...+.+.|..+ ++...++++..... -|...|+.-...+.+.+.
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccch
Confidence 999999999764 347778876555555555555 89999998887543 366777777777777665
Q ss_pred --HHHHhhh
Q 039637 151 --LKDAYIV 157 (159)
Q Consensus 151 --~~~A~~~ 157 (159)
++++++.
T Consensus 222 ~~~~eELe~ 230 (349)
T 3q7a_A 222 RSLQDELIY 230 (349)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 5565554
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.81 E-value=0.00012 Score=44.88 Aligned_cols=103 Identities=9% Similarity=-0.044 Sum_probs=79.7
Q ss_pred HhcCChHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChH----------HHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 41 CRTGDMESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMY----------MLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
.+.+.+++|...++...+. .| +...|..+-.++...+++ ++|+..|++.++.. +-+..+|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 4567789999999999885 45 567888788888887764 59999999999864 2367789999999
Q ss_pred HHccC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039637 110 LGKMR-----------AHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (159)
Q Consensus 110 ~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (159)
|...| ++++|...|++..+. .|+...|...+...-+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhC
Confidence 98874 899999999998864 46666777666655443
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.80 E-value=0.0009 Score=49.50 Aligned_cols=139 Identities=4% Similarity=-0.097 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC-hHHHHHHH
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG--DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK-MYMLAYRT 87 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~ 87 (159)
++++++.++.+.+..++ +..+|+.-..++.+.+ +++++++.++++.+.. .-|...|+.--....+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 89999999999988877 9999999999999999 6799999999999964 246788887777777888 88999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHcc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHH
Q 039637 88 MVDMHRKGHQPEEELCSSLIFHLGKM--------------RAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKD 153 (159)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (159)
+.++.+.. +-+..+|+.....+.+. +.++++.+.+++..... |-+...|...-..+.+.++.++
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 99998765 34777887666665552 66899999998777533 4456677777777777666433
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.78 E-value=0.00094 Score=50.82 Aligned_cols=131 Identities=8% Similarity=-0.083 Sum_probs=72.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
..+.|++++|.++.+.+ .+...|..+...+.+.++++.|.++|.++.. |..+...+...++.+..
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 34556666666653222 3677888888888888888888888887643 33344444445555555
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--------CCCCCH----HHHHHHHHHHHhcCcHH
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS--------KRSMCK----ALHEKILHILISGKLLK 152 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~----~~~~~l~~~~~~~g~~~ 152 (159)
.++-+.....|. ++....+|.+.|++++|.+++.++... ...|.. .+....-..+...|+.+
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchh
Confidence 544444444332 222333344455555555555444311 123344 44445555666777655
Q ss_pred HHhh
Q 039637 153 DAYI 156 (159)
Q Consensus 153 ~A~~ 156 (159)
.|..
T Consensus 801 ~a~~ 804 (814)
T 3mkq_A 801 VSER 804 (814)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 4443
No 211
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.75 E-value=0.0041 Score=42.88 Aligned_cols=134 Identities=5% Similarity=-0.065 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh-HHHHHHH
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG--DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM-YMLAYRT 87 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~ 87 (159)
+++++.+++.+....++ +..+|+.-...+.+.+ ++++++.+++++.+.. +-|...|+.--......|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 67899999999888776 9999998888888887 4899999999999864 3467788877777777787 6899999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHcc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039637 88 MVDMHRKGHQPEEELCSSLIFHLGKM--------------RAHSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (159)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (159)
+..+.+.. +-|..+|+.....+.+. +.++++...++..... .|-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 99999875 34777776655555444 5688899999877753 344666666554444444
No 212
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.74 E-value=0.0029 Score=46.00 Aligned_cols=117 Identities=11% Similarity=0.097 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHH--HHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFH--ILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (159)
|...+....+.+..+.|..+|.+. ... .++...|. +.+.... .++.+.|..+|+...+.. +-++..+...+...
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 333444444567788899999988 321 12333333 2222222 236899999999988753 22355667778888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 111 GKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 111 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.+.|+.+.|..+|+.+. .+...|...+..=...|+.+.+..++
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88999999999999873 25778888888888889988887765
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.72 E-value=0.0005 Score=38.03 Aligned_cols=58 Identities=10% Similarity=0.175 Sum_probs=40.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhcCCCCC-hh-hHHHHHHHHHccChHHHHHHHHHHHHHcC
Q 039637 36 MLCAYCRTGDMESVMHVMRKLDELAISPD-YN-TFHILIKYFCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (159)
....+.+.|++++|...|++..+. .|+ .. .+..+-.++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566777788888888777764 343 34 66667777777777888877777777653
No 214
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.63 E-value=0.0065 Score=41.90 Aligned_cols=138 Identities=9% Similarity=0.013 Sum_probs=98.6
Q ss_pred hcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHhHhcCCCCChhhHHHHHHHH
Q 039637 7 RSGCF-EETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD----------MESVMHVMRKLDELAISPDYNTFHILIKYF 75 (159)
Q Consensus 7 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 75 (159)
+.|.+ ++|++.++.+...+|. +..+|+.--..+...+. +++++.+++.+.... +-+..+|+.--..+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34443 4799999999987766 66777755544444333 678899999988753 24677887777777
Q ss_pred HccC--hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039637 76 CKEK--MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA-HSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (159)
Q Consensus 76 ~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (159)
.+.+ .+++++.+++.+.+.. +-|..+|+--.......|. ++++...++++.... +-|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 7777 4899999999999874 4577888776666777787 689999999888754 33566666665555544
No 215
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.58 E-value=0.0081 Score=41.71 Aligned_cols=140 Identities=11% Similarity=-0.026 Sum_probs=107.4
Q ss_pred hcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH-
Q 039637 7 RSG-CFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRT-G-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM- 82 (159)
Q Consensus 7 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~- 82 (159)
..| .+++++++++.+....++ +..+|+.--..+.+. + ++++++++++++.+.. .-|...|+.-.....+.+.++
T Consensus 100 ~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 100 SLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC
T ss_pred HhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc
Confidence 345 599999999999988877 899999888888776 7 8999999999998753 346677776666665556665
Q ss_pred -------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 039637 83 -------LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA-------HSEALSVYNMLRYSKRSMCKALHEKILHILISG 148 (159)
Q Consensus 83 -------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (159)
++++...++.+... -|..+|+-....+.+.+. ++++...+++.... .+-|...|+.+-..+.+.
T Consensus 178 ~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 88999999998753 577888877777777775 78899888877753 344677777766666665
Q ss_pred Cc
Q 039637 149 KL 150 (159)
Q Consensus 149 g~ 150 (159)
|+
T Consensus 256 ~~ 257 (349)
T 3q7a_A 256 SL 257 (349)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.56 E-value=0.0047 Score=43.16 Aligned_cols=61 Identities=10% Similarity=-0.185 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 65 YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|...|++..
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444333444455555555555554443 344444444444444555555555554433
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.40 E-value=0.0019 Score=39.33 Aligned_cols=81 Identities=11% Similarity=-0.001 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhHhcCCCC--ChhhHHHHHHHHHccChHHHHH
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG---DMESVMHVMRKLDELAISP--DYNTFHILIKYFCKEKMYMLAY 85 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~ 85 (159)
...+.+.|.+-.+.+. ++..+.-.+..++++.+ +.+++..+|....+.. .| +...+-.+--++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3344444444444333 34444444555555544 3345555555555432 12 1222223444445555555555
Q ss_pred HHHHHHHH
Q 039637 86 RTMVDMHR 93 (159)
Q Consensus 86 ~~~~~m~~ 93 (159)
++++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.40 E-value=0.0038 Score=43.61 Aligned_cols=129 Identities=8% Similarity=-0.089 Sum_probs=87.4
Q ss_pred CCCCHHHHHHHHHHHHh--cC---ChHHHHHHHHHhHhcCCCCCh-hhHHHHHHHHHcc---C-----hHHHHHHHHHHH
Q 039637 26 DKYDVVLLNSMLCAYCR--TG---DMESVMHVMRKLDELAISPDY-NTFHILIKYFCKE---K-----MYMLAYRTMVDM 91 (159)
Q Consensus 26 ~~~~~~~~~~ll~~~~~--~~---~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~---~-----~~~~a~~~~~~m 91 (159)
++.+...|...+++... .+ +..+|..+|++..+ +.|+- ..|..+.-++... + ........+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34577888888876543 33 35789999999998 45763 4555444444311 0 111111122222
Q ss_pred HH-cCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 92 HR-KGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 92 ~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.. ...+.++.++..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 11 1224577888888777888899999999999998765 78878888889999999999998865
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.26 E-value=0.0049 Score=34.75 Aligned_cols=63 Identities=6% Similarity=-0.180 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcC------CCCChhhHHHHHHHHHccChHHHHHHHHHHHHH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELA------ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
..+-.|...+.+.+++..|...|+...+.- -.+....+..+..++.+.|+++.|...+++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444445555555555555554443320 011233344444444444444444444444443
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.17 E-value=0.0048 Score=46.99 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=57.4
Q ss_pred HhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcC-------CCCcHHHHHHHHHHHHcc
Q 039637 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG-------HQPEEELCSSLIFHLGKM 113 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-------~~~~~~~~~~li~~~~~~ 113 (159)
.+.|++++|.++.+. -.+...|..+...+.+.++++.|+++|.++.... ..-+......+.......
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345555555555432 2456788888888888888888888888764210 011222333444444445
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 114 RAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 114 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
|+.+.|...+-... -+...++.|.+.+++++|..+
T Consensus 737 ~~~~~A~~~~~~~g---------~~~~a~~~~~~~~~~~~A~~l 771 (814)
T 3mkq_A 737 GKFNLAFNAYWIAG---------DIQGAKDLLIKSQRFSEAAFL 771 (814)
T ss_dssp TCHHHHHHHHHHHT---------CHHHHHHHHHHTTCHHHHHHH
T ss_pred CchHHHHHHHHHcC---------CHHHHHHHHHHcCChHHHHHH
Confidence 55555554443321 124556667777777777654
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.13 E-value=0.0075 Score=33.40 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcC
Q 039637 28 YDVVLLNSMLCAYCRTGD---MESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (159)
.|+..+..+..++...++ .++|..++++..+. .|+ ......+-..+.+.|++++|...|+.+++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356666666666654443 56777777777763 344 4455555566777777777777777777653
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.13 E-value=0.013 Score=35.60 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC---hHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHccCCHHHHH
Q 039637 46 MESVMHVMRKLDELAISPDYNTFHILIKYFCKEK---MYMLAYRTMVDMHRKGHQP--EEELCSSLIFHLGKMRAHSEAL 120 (159)
Q Consensus 46 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~ 120 (159)
...+.+-|.+..+.|. ++..+...+-.++++.+ +.++++.+++.+.+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556667776666655 67777777888999988 7779999999999875 34 3445556778889999999999
Q ss_pred HHHHHHHhC
Q 039637 121 SVYNMLRYS 129 (159)
Q Consensus 121 ~~~~~~~~~ 129 (159)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999864
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.019 Score=35.79 Aligned_cols=101 Identities=9% Similarity=0.049 Sum_probs=67.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYML 83 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 83 (159)
...+.|+++.|.++.+.+ -+...|..|.+...+.|+++-|.+.|.+... +..+.-.|...|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 457889999999997766 2788999999999999999999999988654 3334444555566655
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (159)
..++-+.....|. ++.....+...|+++++.++|.+
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544444444431 23333334455666666665543
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.03 E-value=0.015 Score=39.27 Aligned_cols=112 Identities=6% Similarity=-0.022 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHH-Hhc--CC------hHHHHHHHHHhHhcCCCCC---hhhHHHHHHHHHcc-----ChHHHHHHHHHHH
Q 039637 29 DVVLLNSMLCAY-CRT--GD------MESVMHVMRKLDELAISPD---YNTFHILIKYFCKE-----KMYMLAYRTMVDM 91 (159)
Q Consensus 29 ~~~~~~~ll~~~-~~~--~~------~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~m 91 (159)
....|..++.+- ... |+ ...|..++++..+ +.|+ -..|..+...|.+. |+.++|.+.|++.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 345677666543 332 43 3567777777777 5676 45788888888884 9999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 039637 92 HRKGHQPEEELCSSLIFHLGKM-RAHSEALSVYNMLRYSKRS--MCKALHEKIL 142 (159)
Q Consensus 92 ~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 142 (159)
++.+..-+..++......+++. |+.+++.+.+++....... |+....+..-
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 9864322477888899999995 9999999999999987666 7765544443
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.00 E-value=0.0066 Score=33.63 Aligned_cols=49 Identities=8% Similarity=-0.092 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcC
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 60 (159)
.++|..++++..+..+. ++.....+...+.+.|++++|...|.++.+..
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 79999999999988776 88999999999999999999999999999853
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.95 E-value=0.04 Score=37.25 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh-----cCChHHHHHHHHHhHhcCCCCC--hhhHHHHHHHHHcc-Ch
Q 039637 10 CFEETKQLAGDFEAKYDK-YDVVLLNSMLCAYCR-----TGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKE-KM 80 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~-~~ 80 (159)
....|...+++..+..+. .+-..|..+...|.+ .|+.++|.+.|++..+ +.|+ ..++......+++. |+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCC
Confidence 356677777777765443 246689999999999 4999999999999999 5674 67777777888884 99
Q ss_pred HHHHHHHHHHHHHcCCC--CcHHHHHHH
Q 039637 81 YMLAYRTMVDMHRKGHQ--PEEELCSSL 106 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~--~~~~~~~~l 106 (159)
.+++.+.+++.+..... |+....+.+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999999987655 555444443
No 227
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=96.88 E-value=0.019 Score=32.20 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 45 DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
|..++..-++.+....+.|++......+++|.+.+++.-|.++++-++.+ +.....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 45556666666666666666666666666666666666666666655543 122233455444
No 228
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.87 E-value=0.0053 Score=43.27 Aligned_cols=74 Identities=14% Similarity=0.013 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHH-----cCCCCcHHHHHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR-----KGHQPEEELCSSL 106 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~~l 106 (159)
+...++.++.+.|++.++...+..+.... ..+...|..++.++.+.|+..+|++.|+...+ .|+.|++.+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45667788888899999988888887642 34677888999999999999999988887753 4888887665433
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.77 E-value=0.024 Score=31.78 Aligned_cols=65 Identities=15% Similarity=-0.017 Sum_probs=43.4
Q ss_pred ChhhHHHHHHHHHccChHHHHHHHHHHHHHcC------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 64 DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG------HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
+..-+..|-..+...+++..|..+++...+.. -.+...++..+..+|.+.|+++.|...+++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33445556677777777777777777766431 123456777777777777777777777777664
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.53 E-value=0.056 Score=32.83 Aligned_cols=115 Identities=10% Similarity=-0.106 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHhcCCh------HHHHHHHHHhHhcCCCCChh----hHHHHHH---HHHccChHHHHHHHHHHHHHc
Q 039637 28 YDVVLLNSMLCAYCRTGDM------ESVMHVMRKLDELAISPDYN----TFHILIK---YFCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~----~~~~ll~---~~~~~~~~~~a~~~~~~m~~~ 94 (159)
-|..+|=..+...-+.|++ +...++|++.... ++|+.. .|--+.- .+...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3777888888888888888 8888999987764 556531 1111111 123348899999999999876
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 039637 95 GHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHIL 145 (159)
Q Consensus 95 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (159)
+-.. ...|-.....-.++|+++.|.+++......+.. +.......++-+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 3333 778888888888999999999999998875544 344555555443
No 231
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=96.51 E-value=0.043 Score=32.60 Aligned_cols=64 Identities=8% Similarity=0.087 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (159)
|..+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+-++.. ..+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 45566677777777777788888888888888888888888888777642 22334566666653
No 232
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=96.41 E-value=0.048 Score=30.66 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=50.2
Q ss_pred HHccC-hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 039637 75 FCKEK-MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHI 144 (159)
Q Consensus 75 ~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (159)
+-+.. |.-+..+.++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.. ..+...+|..+++-
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 33444 56677788888888888888888888888888888888888888877753 22234567766654
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.14 Score=39.34 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=74.9
Q ss_pred HhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhHhc------CCCCCh-h-----hH-HH
Q 039637 6 CRSGC-FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDEL------AISPDY-N-----TF-HI 70 (159)
Q Consensus 6 ~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~------~~~~~~-~-----~~-~~ 70 (159)
...++ .+.|.++|+++.+..+..+......++..+...+ +--+|.+++.+..+. ...+.. . .+ ..
T Consensus 259 ~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 259 AITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp HTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 33444 6889999999988755434333344444443333 223455555544321 121111 0 00 11
Q ss_pred HH----HHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 71 LI----KYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 71 ll----~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
|+ +.|...|+++.|+++-.+....- +.+-.+|-.|..+|...|+++.|+-.++.+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 22 33566789999999998887652 3356789999999999999999999988774
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.25 E-value=0.081 Score=31.70 Aligned_cols=119 Identities=8% Similarity=0.052 Sum_probs=82.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------------------cCChHHHHHHHHHhHhcCCC
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCR----------------------TGDMESVMHVMRKLDELAIS 62 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------------------~~~~~~a~~~~~~m~~~~~~ 62 (159)
+.-.|.+++..++..+..++. +..-||-+|.-... +|+...+...+-.+-
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n----- 88 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN----- 88 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-----
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc-----
Confidence 345688999999998887643 34444444443333 334444444443321
Q ss_pred CChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 039637 63 PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRS 132 (159)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 132 (159)
.+...+...++....+|+.+...+++..+.. +.+|++...-.+..+|.+.|+..+|..++.+.-+.|.+
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3445566778888888888888888888654 34678888888999999999999999999988877754
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.12 E-value=0.072 Score=37.52 Aligned_cols=76 Identities=13% Similarity=0.007 Sum_probs=61.9
Q ss_pred hHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 039637 67 TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY-----SKRSMCKALHEKI 141 (159)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 141 (159)
....++.++...|++.++...+..+... .+.+...+..++.++.+.|+..+|.+.|+.... -|+.|+..+ ..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l-~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL-RAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH-HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH-HHH
Confidence 4556788888999999999999988865 356888999999999999999999999987653 489999876 334
Q ss_pred HHH
Q 039637 142 LHI 144 (159)
Q Consensus 142 ~~~ 144 (159)
...
T Consensus 251 ~~~ 253 (388)
T 2ff4_A 251 NER 253 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.12 E-value=0.066 Score=31.42 Aligned_cols=84 Identities=10% Similarity=0.012 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHH---HHHHHHHHHHcCCCC--cHHHHHHHHHHHHccCCHHH
Q 039637 44 GDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYML---AYRTMVDMHRKGHQP--EEELCSSLIFHLGKMRAHSE 118 (159)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~ 118 (159)
.....+.+-|.+....|. |+..+-..+..++.+.+.... ++.++..+.+.+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334455555555555444 666665556677777665554 777777777653 23 22233356677788888888
Q ss_pred HHHHHHHHHhC
Q 039637 119 ALSVYNMLRYS 129 (159)
Q Consensus 119 a~~~~~~~~~~ 129 (159)
|.+.++.+...
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888877753
No 237
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.97 E-value=0.11 Score=30.83 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=55.5
Q ss_pred hcC-ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 42 RTG-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 42 ~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
+.. |..+...-++.+....+.|++......+++|-+.+|+.-|.++++-++.+ +.+...+|..++.
T Consensus 64 ~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 64 KPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 444 67788888899999999999999999999999999999999999999865 3445667877764
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.82 E-value=0.051 Score=33.00 Aligned_cols=93 Identities=12% Similarity=0.101 Sum_probs=65.4
Q ss_pred ChhhHHHHHHHHHccChH------HHHHHHHHHHHHcCCCCcHH-HHHHHHH------HHHccCCHHHHHHHHHHHHhCC
Q 039637 64 DYNTFHILIKYFCKEKMY------MLAYRTMVDMHRKGHQPEEE-LCSSLIF------HLGKMRAHSEALSVYNMLRYSK 130 (159)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~g~~~~~~-~~~~li~------~~~~~g~~~~a~~~~~~~~~~~ 130 (159)
|..+|-..+.-..+.|++ ++.+++|++.... ++|+.. .|...|. .+...+++++|.++|+.+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 466777777777777777 7788888877764 455421 1112221 2234489999999999887653
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 131 RSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
-.. ..+|....+.=.+.|+++.|.+++
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkIL 117 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLL 117 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 333 778888889999999999998875
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.16 Score=39.01 Aligned_cols=124 Identities=12% Similarity=0.054 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHhHhcCCCCChhhH--HHHHHHHHccCh-HHHHHHHHHHHHHc------CCCC-cH
Q 039637 32 LLNSMLCAYCRTGD-MESVMHVMRKLDELAISPDYNTF--HILIKYFCKEKM-YMLAYRTMVDMHRK------GHQP-EE 100 (159)
Q Consensus 32 ~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~-~~~a~~~~~~m~~~------g~~~-~~ 100 (159)
.-..++..+...++ .+.|..+|+++.+.. |...++ ..++......++ --+|.+++.+..+. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34455555555666 577999999998853 543332 233333333332 22455555444321 1111 11
Q ss_pred ----------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 101 ----------ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 101 ----------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
.....=.+.+...|+++.|..+-++.... .|-+-.+|..|..+|++.|+++.|+-.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 12222245566689999999999987752 3445789999999999999999998654
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.26 Score=30.71 Aligned_cols=104 Identities=18% Similarity=0.142 Sum_probs=66.9
Q ss_pred HHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH
Q 039637 37 LCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (159)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (159)
.+...+.|+++.|.++.+.+ .+...|..|-......|+++-|+++|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456789999999998765 4678999999999999999999999987653 23344445556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHhcCcHHHHhh
Q 039637 117 SEALSVYNMLRYSKRSMCKAL--------HEKILHILISGKLLKDAYI 156 (159)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~A~~ 156 (159)
+.-.++-+.....| ..+... +..-++.|.+.|++.+|.-
T Consensus 77 e~L~kla~iA~~~g-~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~ 123 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE-DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA 123 (177)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCc-cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH
Confidence 66555544433322 111111 1233455666666666543
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.24 E-value=0.24 Score=29.70 Aligned_cols=86 Identities=8% Similarity=-0.022 Sum_probs=67.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHH
Q 039637 6 CRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAY 85 (159)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 85 (159)
..+|+.......+-.+- .+....+..++.....|+-++..+++..+... ..|++...-.+..+|.+.|+..++.
T Consensus 72 s~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GGCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHH
Confidence 34567777777764442 35566788899999999999999999996443 4678888888999999999999999
Q ss_pred HHHHHHHHcCCC
Q 039637 86 RTMVDMHRKGHQ 97 (159)
Q Consensus 86 ~~~~~m~~~g~~ 97 (159)
+++.+.=+.|.+
T Consensus 146 eLl~~AC~kG~k 157 (172)
T 1wy6_A 146 TLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhhhH
Confidence 999999888863
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.13 E-value=0.66 Score=37.44 Aligned_cols=142 Identities=10% Similarity=0.052 Sum_probs=85.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC--------------------
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-------------------- 64 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-------------------- 64 (159)
+...+..+.|.++...+ +.+...--.+..++...|++++|.+.|.+... |+..+
T Consensus 822 l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 822 LFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccccc
Confidence 44455555555543332 22444444556677788888888888876421 11110
Q ss_pred ---hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCC--Cc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 039637 65 ---YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQ--PE--EELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKAL 137 (159)
Q Consensus 65 ---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 137 (159)
..=|..++..+.+.+.++.+.++-....+...+ ++ ...|..+...+...|++++|...+-.+.....+ ...
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~c 973 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSC 973 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHH
Confidence 112456667777777777777666555543211 11 225677888888888888888888777654433 456
Q ss_pred HHHHHHHHHhcCcHHHH
Q 039637 138 HEKILHILISGKLLKDA 154 (159)
Q Consensus 138 ~~~l~~~~~~~g~~~~A 154 (159)
...+|..+|..|..+.-
T Consensus 974 Lr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhCCChhhh
Confidence 67777777777766543
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.99 E-value=0.61 Score=32.99 Aligned_cols=155 Identities=13% Similarity=0.047 Sum_probs=98.1
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhHhcCCCCChhhH------HH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAK--YD--KYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPDYNTF------HI 70 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~------~~ 70 (159)
.+.|.+.|+.++..+++.....- .+ ......-..+++.+.... ..+.-.++..+..+..- -...+| ..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~k 104 (394)
T 3txn_A 26 GELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEAR 104 (394)
T ss_dssp HHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 46788899999999988765422 01 113445678888887754 34444455444443211 112344 26
Q ss_pred HHHHHHccChHHHHHHHHHHHHHcCCC-----CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 039637 71 LIKYFCKEKMYMLAYRTMVDMHRKGHQ-----PEEELCSSLIFHLGKMRAHSEALSVYNMLRYS--KRSMCKALHEKILH 143 (159)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~g~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~ 143 (159)
+...|...|++.+|.+++.++.+.-.. .-..++-.-+..|...+++.++...+...... .+.+++.+ ...+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i-~a~i~ 183 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV-QGALD 183 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH-HHHHH
Confidence 788899999999999999988864211 12445666778889999999999999866532 23344433 23333
Q ss_pred -----HHH-hcCcHHHHhhhh
Q 039637 144 -----ILI-SGKLLKDAYIVV 158 (159)
Q Consensus 144 -----~~~-~~g~~~~A~~~~ 158 (159)
.+. ..+++..|...|
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHH
Confidence 333 678888887654
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.91 E-value=0.28 Score=28.73 Aligned_cols=87 Identities=8% Similarity=-0.032 Sum_probs=60.7
Q ss_pred HHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 039637 71 LIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSE---ALSVYNMLRYSKRS-MCKALHEKILHILI 146 (159)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 146 (159)
+++.-........+.+-+......|. ++..+--.+..++.+..+.+. ++.+++.+...+.+ -.....-.+.-++.
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 33444444555666677766666554 666666678888888877666 88899988875422 23445567778999
Q ss_pred hcCcHHHHhhhh
Q 039637 147 SGKLLKDAYIVV 158 (159)
Q Consensus 147 ~~g~~~~A~~~~ 158 (159)
+.|++++|.+.+
T Consensus 86 klg~Y~~A~~~~ 97 (126)
T 1nzn_A 86 RLKEYEKALKYV 97 (126)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhhhHHHHHHHH
Confidence 999999998865
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.62 Score=33.26 Aligned_cols=98 Identities=14% Similarity=0.032 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC--hhhHHHHHHHHHccChHHHHHHHHHHHHH---cCCCCcHHH--H
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD--YNTFHILIKYFCKEKMYMLAYRTMVDMHR---KGHQPEEEL--C 103 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~~--~ 103 (159)
.++..+...|.+.|++++|.+.|.++......+. ...+-.++..+...+++..+...+.+... .+..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3677889999999999999999999987644333 46677888899999999999999888753 232333221 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 104 SSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..-...+...+++..|.+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122234456889999888876654
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.06 E-value=0.4 Score=29.56 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=61.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhcC-CCCCh-------hhHHHHHHHHHccChHHHHHHHHHHHHHc--C---------
Q 039637 35 SMLCAYCRTGDMESVMHVMRKLDELA-ISPDY-------NTFHILIKYFCKEKMYMLAYRTMVDMHRK--G--------- 95 (159)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g--------- 95 (159)
.-+..+...+.++.|+-+.+.+.... ..|+. .++..+.+++...+++..|...|++.++. .
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 44556677778888777776655431 12221 24456667778888888888888775421 0
Q ss_pred -------------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 039637 96 -------------HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM 133 (159)
Q Consensus 96 -------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 133 (159)
...+...---+..+|.+.+++++|+.+++.+....-.|
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 11112333347788888899999999988776544443
No 247
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=93.80 E-value=0.55 Score=27.57 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=11.2
Q ss_pred hhHHHhcCCHHHHHHHHHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFE 22 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~ 22 (159)
++-|...|+.++|.+.++++.
T Consensus 14 l~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555554
No 248
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=93.31 E-value=0.48 Score=28.72 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=27.2
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHhHhcCC
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD--MESVMHVMRKLDELAI 61 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~ 61 (159)
++-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...|+
T Consensus 16 L~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 16 LKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 44555566666666666655421111 22333334444443222 2345555555555444
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.24 E-value=1.5 Score=31.22 Aligned_cols=93 Identities=10% Similarity=0.011 Sum_probs=64.3
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-CCChhhHHHH----HHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKY--DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-SPDYNTFHIL----IKY 74 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l----l~~ 74 (159)
.+.|.+.|+.+.|.+.|.++...- ...-...+-.+++.+...+++..+...+.+....-. .++...-+.+ ...
T Consensus 138 a~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~ 217 (429)
T 4b4t_R 138 GEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIH 217 (429)
T ss_dssp HHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHH
Confidence 356889999999999999998653 333456788888999999999999999988764311 1222222211 112
Q ss_pred HHccChHHHHHHHHHHHHHc
Q 039637 75 FCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~ 94 (159)
+...+++..|-..|-+....
T Consensus 218 ~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 218 CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp GGGTSCHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHhcc
Confidence 34568899888888776654
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.21 E-value=1.5 Score=35.38 Aligned_cols=153 Identities=7% Similarity=-0.040 Sum_probs=97.2
Q ss_pred hHHHhcCCHHHHHHHHHHHHhC----CC------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcC
Q 039637 3 SAFCRSGCFEETKQLAGDFEAK----YD------------------KYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELA 60 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~----~~------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 60 (159)
.+|...|++++|.+.|.+.-.. +. ..-..=|..++..+.+.+.++.+.++-....+..
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~ 929 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 929 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4678899999999999764210 00 0011236778888888999988888776665542
Q ss_pred CCCC----hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHH------------HHHHHHH
Q 039637 61 ISPD----YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHS------------EALSVYN 124 (159)
Q Consensus 61 ~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~------------~a~~~~~ 124 (159)
-.-+ ...|..+++++...|++++|-..+-.+.....+ ......|+...++.|..+ +..+++.
T Consensus 930 ~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~ 1007 (1139)
T 4fhn_B 930 ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLE 1007 (1139)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHH
T ss_pred cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHH
Confidence 2111 236889999999999999998888777655433 345566666666666543 3344433
Q ss_pred H-HHhC-CCCCCHHHHHHHHHHHHhcCcHHHHhhh
Q 039637 125 M-LRYS-KRSMCKALHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 125 ~-~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (159)
. .+.. .....+.-|..|-..+...|++..|-.+
T Consensus 1008 ~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 1008 RKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp HHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHhCCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 1 1111 1111123467777888888888777654
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.81 E-value=0.99 Score=25.34 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHH
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVD 90 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 90 (159)
.++|.-+-+.+...+. ...+--+-+..+...|+|++|+.+...+. .||...|..|- -.+.|-.+++...+..
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence 4445444444443322 22222222333444555555555443332 35555544332 2234445555555555
Q ss_pred HHHcC
Q 039637 91 MHRKG 95 (159)
Q Consensus 91 m~~~g 95 (159)
+..+|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 55444
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.77 E-value=2 Score=28.74 Aligned_cols=113 Identities=18% Similarity=0.181 Sum_probs=79.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh----hHHHHHHHHHcc
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN----TFHILIKYFCKE 78 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~ 78 (159)
....+.|++++|++....-++..|. |...-..++..+|-.|+++.|..-++...+ +.|+.. +|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHH----
Confidence 4578899999999999998888776 999999999999999999999999988877 345432 33333333
Q ss_pred ChHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHc--cCCHHHHHHHHHHHHh
Q 039637 79 KMYMLAYRTMVDMHRKGHQPE-----EELCSSLIFHLGK--MRAHSEALSVYNMLRY 128 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~--~g~~~~a~~~~~~~~~ 128 (159)
+..-.++...+-.|. ..-...++.+... .|+.++|..+-+...+
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 223334444333322 2233455655554 4999999988777653
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.30 E-value=2.6 Score=29.16 Aligned_cols=84 Identities=13% Similarity=-0.024 Sum_probs=51.6
Q ss_pred HHhcCChHHHHHHH----HHhHhcCCCCChhhHHHHHHHHHccChHH-HHHHHHHHHH----HcC--CCCcHHHHHHHHH
Q 039637 40 YCRTGDMESVMHVM----RKLDELAISPDYNTFHILIKYFCKEKMYM-LAYRTMVDMH----RKG--HQPEEELCSSLIF 108 (159)
Q Consensus 40 ~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~----~~g--~~~~~~~~~~li~ 108 (159)
+.+.|+...+-++- +-+.+.++++|..+...++..+.....-+ .-.++.+.+. +.| ..-|+.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 34445554443333 33445678888888888887776654311 1123333332 223 2346778888999
Q ss_pred HHHccCCHHHHHHHH
Q 039637 109 HLGKMRAHSEALSVY 123 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~ 123 (159)
.|.+.+++.+|..-|
T Consensus 145 ~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHccCCHHHHHHHH
Confidence 999999999998776
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.23 E-value=0.6 Score=28.76 Aligned_cols=93 Identities=8% Similarity=0.025 Sum_probs=63.3
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHhHhcC--C--CC------
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKY-DKYD-------VVLLNSMLCAYCRTGDMESVMHVMRKLDELA--I--SP------ 63 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~--~~------ 63 (159)
++.+...|.++.|.-+.+.+.... ..|+ ..+...+.+++...+++..|...|++..+.. + .+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 355677889999988888765331 1222 1356777889999999999999999854321 0 00
Q ss_pred --------------ChhhHHHHHHHHHccChHHHHHHHHHHHHHc
Q 039637 64 --------------DYNTFHILIKYFCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 64 --------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (159)
+...---+-.|+.+.+++++|+.+++.+-.+
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0112234778899999999999998876544
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.03 E-value=2.2 Score=30.25 Aligned_cols=92 Identities=10% Similarity=-0.017 Sum_probs=62.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhcCCCCC-----hhhHHHHHHHHHccChHHHHHHHHHHHHHc--CCCCcHHHHH---
Q 039637 35 SMLCAYCRTGDMESVMHVMRKLDELAISPD-----YNTFHILIKYFCKEKMYMLAYRTMVDMHRK--GHQPEEELCS--- 104 (159)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~--- 104 (159)
.++..|...|++.+|..++.++.+.--..| ...|..-+..|...+++.++...+...... .+.+++.+-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 678899999999999999999887522222 244566677788999999999988777632 2223332221
Q ss_pred -HHHHHHH-ccCCHHHHHHHHHHH
Q 039637 105 -SLIFHLG-KMRAHSEALSVYNML 126 (159)
Q Consensus 105 -~li~~~~-~~g~~~~a~~~~~~~ 126 (159)
+-.-.+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1122344 778899888776544
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.44 E-value=1.4 Score=24.74 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHH
Q 039637 11 FEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVD 90 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 90 (159)
.++|.-+-+.+...+. ...+--+-+..+...|+|++|+.+...+. .||...|..|-. .+.|-.+++...+..
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4445444444443322 22222222333444555555555544332 355555544322 233444555555544
Q ss_pred HHHcC
Q 039637 91 MHRKG 95 (159)
Q Consensus 91 m~~~g 95 (159)
+..+|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 44444
No 257
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=89.52 E-value=2.2 Score=29.83 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=43.9
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD-MESVMHVMRKLDELAISPDYNTFHILIKYFCK 77 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 77 (159)
+|.-|...|++++|.+.++++.....-....++..+..++-+... -+.+..++..+...|+-+.......+...+..
T Consensus 18 ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 18 VVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 367788999999999999988631000013344444444433321 24467777777776664444444433333333
No 258
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=89.00 E-value=2.5 Score=25.40 Aligned_cols=62 Identities=10% Similarity=0.125 Sum_probs=45.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 19 GDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
+.+.+.|.. .+..-..+++.+...+..-.|.++++.+.+.+...+..|.-.-|+.+...|-.
T Consensus 16 ~~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 346677776 55666777788777777888999999998887667777777777777776643
No 259
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=88.97 E-value=2.2 Score=25.44 Aligned_cols=61 Identities=7% Similarity=-0.002 Sum_probs=43.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 20 DFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 20 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
.+.+.|..++ ..-..+++.+...+..-.|.++++.+.+.+...+..|...-|+.+...|-.
T Consensus 12 ~l~~~g~r~T-~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRIT-PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCC-HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4667777643 455566667666777788999999988877667777777777777776643
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.54 E-value=2.5 Score=24.97 Aligned_cols=66 Identities=14% Similarity=-0.010 Sum_probs=34.3
Q ss_pred CChhhHHHHHHHHHccC---hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 63 PDYNTFHILIKYFCKEK---MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 63 ~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
|+..|--....++.+.+ +..+++.++..+.+.+..-.....--+.-++.+.|++++|.+..+.+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444333444444443 3345666666666544111233334555666666777777776666664
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.97 E-value=2.9 Score=27.99 Aligned_cols=110 Identities=8% Similarity=0.087 Sum_probs=67.6
Q ss_pred HHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHccC
Q 039637 37 LCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQ--PEEELCSSLIFHLGKMR 114 (159)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g 114 (159)
+....+.|+++++++....-++.. +-|...=..++.-+|-.|+|++|.+-++...+.... |....|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 345678899999999888877753 234555567889999999999999988888775311 223344444433
Q ss_pred CHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHh--cCcHHHHhhh
Q 039637 115 AHSEALSVYNMLRYSKR-----SMCKALHEKILHILIS--GKLLKDAYIV 157 (159)
Q Consensus 115 ~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~--~g~~~~A~~~ 157 (159)
+..=.+.-..+. .....-...++.++.. .|+.++|.++
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~l 122 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 122 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 222223333221 1223344666666654 4777776543
No 262
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=87.92 E-value=4 Score=28.51 Aligned_cols=66 Identities=9% Similarity=0.238 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC--hHHHHHHHHHHHHHcCCCCc
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK--MYMLAYRTMVDMHRKGHQPE 99 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~ 99 (159)
.+.++.-|...++.++|...++++..-... .......+..+.-+.+ ..+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 345555555556666666666555421100 1222333334444322 23344555555555554433
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.52 E-value=5.2 Score=27.36 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=48.5
Q ss_pred HHHhcCChHHHHHH----HHHhHhcCCCCChhhHHHHHHHHHccChHH-HHHHHHHHHH----HcCC--CCcHHHHHHHH
Q 039637 39 AYCRTGDMESVMHV----MRKLDELAISPDYNTFHILIKYFCKEKMYM-LAYRTMVDMH----RKGH--QPEEELCSSLI 107 (159)
Q Consensus 39 ~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~----~~g~--~~~~~~~~~li 107 (159)
.+.+.|+...+-++ .+-..+.++.++......++..+.....-+ .-.++++.+. +.|- .-++.....+.
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a 141 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIG 141 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 34455665555443 333444577777777777777765532111 1123333333 4432 13667777888
Q ss_pred HHHHccCCHHHHHHHH
Q 039637 108 FHLGKMRAHSEALSVY 123 (159)
Q Consensus 108 ~~~~~~g~~~~a~~~~ 123 (159)
..|.+.|++.+|..-|
T Consensus 142 ~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHH
Confidence 8888888888877554
No 264
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=87.20 E-value=2.2 Score=25.09 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=43.5
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 20 DFEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 20 ~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
.+.+.|..++ ..-..+++.+...+ ..-.|.++++.+.+.+...+..|...-|+.+...|-.
T Consensus 8 ~l~~~g~r~T-~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVT-LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCC-HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCC-HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3567777644 45556677777666 7788999999998887777777777777777776644
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.97 E-value=6.8 Score=28.13 Aligned_cols=90 Identities=8% Similarity=-0.052 Sum_probs=54.7
Q ss_pred HHHHHHHHccChHHHHHHHHHHHHHc--CCCCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC--HHH
Q 039637 69 HILIKYFCKEKMYMLAYRTMVDMHRK--GHQPE---EELCSSLIFHLGKMRAHSEALSVYNMLRY----SKRSMC--KAL 137 (159)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~ 137 (159)
..|...+...|++.+|.+++..+... |.... ...+-.-++.|...+++..|..+++++.. ...+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 35566677778888888888777632 22111 34555667777788888888887776542 122222 123
Q ss_pred HHHHHHHHHhcCcHHHHhhhh
Q 039637 138 HEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 138 ~~~l~~~~~~~g~~~~A~~~~ 158 (159)
|...+..+...+++.+|...|
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 556666666677776665543
No 266
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=86.97 E-value=3.2 Score=24.38 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=35.3
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 91 MHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 91 m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
+.+.|..+++.-. .++..+...+ ..-.|..+++.+...+...+..|.-.-+..+.+.|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4456666654433 3455555544 5556777777776666666666666666666666644
No 267
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=86.96 E-value=3.3 Score=24.86 Aligned_cols=62 Identities=11% Similarity=0.199 Sum_probs=38.4
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 89 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
+.+.+.|..+++.-. .++..+...+..-.|..+++.+...+...+..|.-..+..+.+.|.+
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345566766654433 45555555556667777777777666666777777777777777654
No 268
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=86.77 E-value=4.1 Score=27.75 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=10.2
Q ss_pred hHHHhcCCHHHHHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFE 22 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~ 22 (159)
+-|...|+.++|.+.++++.
T Consensus 174 ~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 174 KEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHcCCCHHHHHHHHHHcC
Confidence 34444555555555555553
No 269
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=86.69 E-value=3.6 Score=24.67 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 90 DMHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 90 ~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
.+.+.|..+++.-. .++..+...+ ..-.|..+++.+...+...+..|.-.-+..+.+.|.+
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35556666665443 3455555554 5556777777777666666766666667777776654
No 270
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=86.28 E-value=2.2 Score=25.46 Aligned_cols=61 Identities=8% Similarity=0.003 Sum_probs=42.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 19 GDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
+.+.+.|..++ ..-..+++.+...+ .-.|.++++.+.+.+...+..|.-.-|+.+...|-.
T Consensus 8 ~~L~~~g~r~T-~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLT-PQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCC-HHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcC-HHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 34567777744 34555666666666 778999999998877677777776677777766643
No 271
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=86.08 E-value=2.4 Score=25.87 Aligned_cols=70 Identities=7% Similarity=0.040 Sum_probs=48.8
Q ss_pred HHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc--CCCCChhhHHHHHHHHHccChH
Q 039637 11 FEETKQLAGD-FEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL--AISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 11 ~~~A~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
.+.+.+-+.. +.+.|..+ +..-..+++.+...+..-.|.++++.+.+. +...+..|.-.-|+.+...|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~-T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKY-TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445554443 45667764 455677778888877888899999998887 6666777776677777777654
No 272
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=85.93 E-value=2.9 Score=24.90 Aligned_cols=61 Identities=11% Similarity=0.167 Sum_probs=35.9
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 89 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
+.+.+.|..++..-. .++..+...+ .-.|..+++.+...+...+..|.-.-+..+.+.|-+
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 344556666655433 3444444444 556777777777666666666666666666666643
No 273
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=85.75 E-value=4 Score=24.29 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=40.0
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 89 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
+.+.+.|..+++.-. .++..+...+..-.|..+++.+...+...+..|....+..+.+.|.+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345566776665443 45555555555666777777777666666777777777777777654
No 274
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=85.54 E-value=3.8 Score=23.92 Aligned_cols=68 Identities=9% Similarity=0.226 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC--hHHHHHHHHHHHHHcCCCCcH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK--MYMLAYRTMVDMHRKGHQPEE 100 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~~ 100 (159)
..+.++.-|...|+.++|...++++..... -.......+..++-+.+ ..+.+.+++..+...|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456788999999999999999999863111 11233445556666653 346677888888877754443
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.43 E-value=5.3 Score=25.44 Aligned_cols=59 Identities=14% Similarity=0.015 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 039637 79 KMYMLAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKAL 137 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 137 (159)
+...++.++|..|...|+-. .+..|......+...|++.+|..+|+.-.+.+-.|-...
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL 152 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRL 152 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 44668899999999887654 456778889999999999999999998888887776543
No 276
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.38 E-value=8.3 Score=27.67 Aligned_cols=149 Identities=9% Similarity=-0.007 Sum_probs=92.7
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhc-CCCCChhhHHHHHHHHH----c
Q 039637 8 SGCFEETKQLAGDFEAK-----YDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDEL-AISPDYNTFHILIKYFC----K 77 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~----~ 77 (159)
.|+++.|++.+-.+.+. +...+......++..|.+.++++...+.+.-+... |..+ ...+.+++.+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 36788888887766642 23446777888999999999999998877665543 3322 33334444332 2
Q ss_pred cChHH--HHHHHHHHHH--HcC-CCC---cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 039637 78 EKMYM--LAYRTMVDMH--RKG-HQP---EEELCSSLIFHLGKMRAHSEALSVYNMLRYS-KRSMC----KALHEKILHI 144 (159)
Q Consensus 78 ~~~~~--~a~~~~~~m~--~~g-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~----~~~~~~l~~~ 144 (159)
....+ .-..+.+.+. ..| ... .......|...|...|++.+|..++..+... ....+ ...+..-++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22222 1112222111 111 111 2234467889999999999999999988742 11112 3467778899
Q ss_pred HHhcCcHHHHhhhh
Q 039637 145 LISGKLLKDAYIVV 158 (159)
Q Consensus 145 ~~~~g~~~~A~~~~ 158 (159)
|...+++..|..++
T Consensus 187 ~l~~~d~~~a~~~~ 200 (445)
T 4b4t_P 187 SILKGDYSQATVLS 200 (445)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHH
Confidence 99999999987654
No 277
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=84.65 E-value=3 Score=25.02 Aligned_cols=62 Identities=13% Similarity=0.030 Sum_probs=43.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 19 GDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
+.+.+.|..++ ..-..+++.+...+ ..-.|.++++.+.+.+...+..|.-.-|+.+...|-.
T Consensus 6 ~~l~~~g~r~T-~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVT-LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCC-HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34667777644 44556666666666 6778999999998877667777777777777776654
No 278
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=84.59 E-value=2.2 Score=21.30 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=20.8
Q ss_pred HHHHHHHHHhHhcCCCCChhhHHHHHHHH-HccC
Q 039637 47 ESVMHVMRKLDELAISPDYNTFHILIKYF-CKEK 79 (159)
Q Consensus 47 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~ 79 (159)
++|.+.|.+|++..-.++..||...++.. ++-.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 56677777766655456666777777666 4443
No 279
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.53 E-value=4.5 Score=23.91 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc
Q 039637 25 YDKYDVVLLNSMLCAYCRTGD---MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99 (159)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (159)
+..|++.+-=.+..++.+..+ ...++.++..+.+.+-.-....+-.|.-++.+.|++++|+++.+.+++. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 556677665556666666654 4568999999888652112444556778899999999999999999974 564
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=84.01 E-value=5.2 Score=24.16 Aligned_cols=70 Identities=9% Similarity=0.247 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc--ChHHHHHHHHHHHHHcCCCCcHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKE--KMYMLAYRTMVDMHRKGHQPEEEL 102 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~~~~~~ 102 (159)
..+.++.-|...|+.++|...++++..... -...+...+..++-+. ...+.+..++..+...|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 456788999999999999999999863111 1123444555666664 234567788888887776544333
No 281
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.23 E-value=5.5 Score=23.87 Aligned_cols=66 Identities=14% Similarity=-0.010 Sum_probs=32.1
Q ss_pred CChhhHHHHHHHHHccC---hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 63 PDYNTFHILIKYFCKEK---MYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 63 ~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
|+..+--....++.+.. +..+++.+++.+.+.+..-.....--|.-++.+.|++++|.++.+.+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444333444444443 2335555666655533211222223455566666666666666666654
No 282
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=83.22 E-value=5.8 Score=24.16 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=36.0
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCcH
Q 039637 91 MHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYS--KRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 91 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
+.+.|..++..- ..++..+...+..-.|..+++.+... +...+..|.-.-+..+.+.|.+
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566665433 34555666666666677777777655 5556666666666666666643
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=82.92 E-value=6.2 Score=24.23 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 039637 83 LAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKAL 137 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 137 (159)
...++|..|...|+-. .+..|......+...|++.+|..+|+.-...+-.|-...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 3678899999887654 456778888889999999999999999888887777554
No 284
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=82.91 E-value=2.1 Score=25.30 Aligned_cols=59 Identities=7% Similarity=-0.022 Sum_probs=41.5
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 22 EAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 22 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
.+.|.. .+..-..+++.+...+..-.|.++++.+.+.+...+..|.-.-|+.+...|-.
T Consensus 6 r~~g~r-~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 6 PPVKGR-ATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp ----CH-HHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred CCCCCc-cCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 444544 34456677778777777888999999998887777777777778888777654
No 285
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=80.49 E-value=4.6 Score=21.15 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=27.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC
Q 039637 21 FEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (159)
Q Consensus 21 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 79 (159)
+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555443322 33444444433 34455566665555544444455554555554443
No 286
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=80.43 E-value=2.2 Score=26.16 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=13.6
Q ss_pred hhHHHhcCCHHHHHHHHHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFE 22 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~ 22 (159)
|+-|...|+.++|.+.++++.
T Consensus 17 i~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 17 IQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHhC
Confidence 455666677777777766665
No 287
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=80.36 E-value=4.6 Score=27.84 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=38.0
Q ss_pred ChhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhHhcCCCCC
Q 039637 1 MISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG-DMESVMHVMRKLDELAISPD 64 (159)
Q Consensus 1 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~ 64 (159)
+++-|...|+.++|.+.++++...... ...+...+..++-+.. .-+.+..++..+.+.|+-+.
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 356788999999999998887532211 2233334444433322 23457778888887665443
No 288
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=78.96 E-value=5.3 Score=20.91 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=35.4
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 90 DMHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 90 ~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
.+.+.|..++..- ..++..+...+ ..-.+..+++.+...+...+..|....+..+.+.|.+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3455666655544 34555555543 4455666666666555556666666666776666654
No 289
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.81 E-value=13 Score=25.40 Aligned_cols=23 Identities=9% Similarity=-0.107 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHccChHHHHHHH
Q 039637 65 YNTFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~ 87 (159)
+.....+-..|.+.+++.+|+..
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHH
Confidence 33444444445555555554443
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.71 E-value=19 Score=27.20 Aligned_cols=116 Identities=5% Similarity=-0.103 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLN----SMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
.+.+.|...|....+... .+..... .+...+...+...++...+....... ++.....-.+....+.|++..+
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 366777777777654332 2333222 22223333442445555555544322 3333333334444566888888
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 85 YRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..+|..|...... .....--+.+++.+.|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888777653221 222222355666777888888888777653
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=78.26 E-value=9.7 Score=24.66 Aligned_cols=55 Identities=7% Similarity=-0.117 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 039637 82 MLAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKA 136 (159)
Q Consensus 82 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 136 (159)
+...++|..|...|+-. .+..|......+...|++.+|..+|+.-...+-.|-..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 45678999999887654 45677888899999999999999999888777777544
No 292
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=77.32 E-value=10 Score=23.42 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCC
Q 039637 47 ESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQ 97 (159)
Q Consensus 47 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 97 (159)
+.+..++..+.+.|.--|..--...+....+.|.+. ...+-.++.+.|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 345666666666666444433344555544433222 24555666666664
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=77.14 E-value=13 Score=24.29 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=59.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhc--CCCC----ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 36 MLCAYCRTGDMESVMHVMRKLDEL--AISP----DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
-++.+....++++|.+++++..+. ++++ ....-...++.-...+.-.-+..+.+.+ .. .+++......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 478889999999999999877643 3332 1122233344444444444455555555 33 4566677778899
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 039637 110 LGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 110 ~~~~g~~~~a~~~~~~~~~ 128 (159)
+.+.|+.+.|..+|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 9999999999999877664
No 294
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=76.69 E-value=5.4 Score=23.21 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChH
Q 039637 31 VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMY 81 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 81 (159)
..-..+++.+...+..-.|.++++.+.+.+...+..|.-.-|+.+...|-.
T Consensus 11 ~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 11 RQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 344566677777777788889998888877666777777777777776643
No 295
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.13 E-value=8.3 Score=21.69 Aligned_cols=85 Identities=16% Similarity=-0.015 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 039637 45 DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (159)
..++|..+-+.+...+. ....--+-+......|++++|..+.+. -+.||...|-+|. -.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~----~c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHG----NPWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTT----CCCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCC----CCCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 56778777777776543 222222334557788999999776543 3468887776654 468899999999898
Q ss_pred HHHhCCCCCCHHHH
Q 039637 125 MLRYSKRSMCKALH 138 (159)
Q Consensus 125 ~~~~~~~~~~~~~~ 138 (159)
++..+|. |....|
T Consensus 93 ~la~sg~-p~~q~F 105 (115)
T 2uwj_G 93 GLGGSSD-PALADF 105 (115)
T ss_dssp HHHTCSS-HHHHHH
T ss_pred HHHhCCC-HHHHHH
Confidence 8876553 333333
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=76.02 E-value=11 Score=22.87 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=43.4
Q ss_pred HHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcH
Q 039637 47 ESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEE 100 (159)
Q Consensus 47 ~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (159)
.++.++|..|..+|+--. ...|..-...+...|++.+|.++|..=++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 348899999999988554 455667777788899999999999998888777754
No 297
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.42 E-value=8.8 Score=21.63 Aligned_cols=85 Identities=15% Similarity=-0.017 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 039637 45 DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (159)
..++|..+-+.+...+. ....--+-+......|++++|..+.+.+ +.||...|-+|. -.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 56778887777776543 2222223345577889999998766543 478888876665 457889999998888
Q ss_pred HHHhCCCCCCHHHH
Q 039637 125 MLRYSKRSMCKALH 138 (159)
Q Consensus 125 ~~~~~~~~~~~~~~ 138 (159)
++..+|. |....|
T Consensus 94 ~la~sg~-p~~q~F 106 (116)
T 2p58_C 94 RLARSQD-PRIQTF 106 (116)
T ss_dssp HHTTCCC-HHHHHH
T ss_pred HHHhCCC-HHHHHH
Confidence 8876553 333333
No 298
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.69 E-value=11 Score=22.54 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=51.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc
Q 039637 25 YDKYDVVLLNSMLCAYCRTGD---MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99 (159)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (159)
+..|+..+-=.+..++.+..+ ..+.+.++..+...+-.-.....-.|.-++.+.|++++|+++.+.+++. .|+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 345677666566667777664 4568889999888542222333445777899999999999999999985 564
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.63 E-value=12 Score=22.69 Aligned_cols=55 Identities=13% Similarity=-0.063 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 039637 83 LAYRTMVDMHRKGHQP-EEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKAL 137 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 137 (159)
+..++|..|...|+-. .+..|......+...|++.+|..+|+.-.+.+-.|-...
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 3789999999887654 456778889999999999999999999888887776543
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.64 E-value=13 Score=22.79 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=43.5
Q ss_pred HHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHH
Q 039637 47 ESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEE 101 (159)
Q Consensus 47 ~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 101 (159)
.++.++|..|..+|+--. ...|..-...+...|++.+|.++|..=++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 337788999999988555 4556667777888899999999999998888777643
No 301
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=72.96 E-value=0.02 Score=41.80 Aligned_cols=117 Identities=12% Similarity=0.062 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
|+..|.-++.+..+.|++++....+...++. ..+...=+.|+-+|++.+++.+.++++. .||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 3444555666666666666666655444432 2233444456666666655543322211 234333444444
Q ss_pred HHHccCCHHHHHHHHHHHHhC--------------------CCCCCHHHHHHHHHHHHhcCcHHHH
Q 039637 109 HLGKMRAHSEALSVYNMLRYS--------------------KRSMCKALHEKILHILISGKLLKDA 154 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~~~~A 154 (159)
-|...|.++.|.-+|..+... ...-++.||-.+..+|+..+.+..|
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHH
Confidence 444555554444444332211 1123445666666777776666544
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=72.85 E-value=17 Score=23.70 Aligned_cols=89 Identities=10% Similarity=-0.014 Sum_probs=54.4
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHH
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAK--YDKY----DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYF 75 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 75 (159)
++.+...+++++|.+++++..+. +.++ +...-...+..-.....-.-+..+.+++ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 56788899999999999987643 2221 1111222233333333333344555555 32 45566667777888
Q ss_pred HccChHHHHHHHHHHHHH
Q 039637 76 CKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~ 93 (159)
.+.|+.++|.++|=+...
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
Confidence 899999999888866653
No 303
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=72.79 E-value=11 Score=23.11 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHH-HHHccC-hHHHHHHHHHHHHH
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIK-YFCKEK-MYMLAYRTMVDMHR 93 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~-~~~~a~~~~~~m~~ 93 (159)
...++.-|...++.++|...++++..... .......++. ++-+.. .-+.+..++..+..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999864221 1122233333 333322 23345566777644
No 304
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=72.75 E-value=23 Score=25.13 Aligned_cols=87 Identities=7% Similarity=0.012 Sum_probs=48.3
Q ss_pred hhHHHhcCC---HHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHH
Q 039637 2 ISAFCRSGC---FEETKQLAGDFEAKY----DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKY 74 (159)
Q Consensus 2 l~~~~~~~~---~~~A~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 74 (159)
+...|..|+ .++|.+.|+...+.+ ++||.. ..+...-.+ ..++-..+++..... .+..--..++.+
T Consensus 204 l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr--~~Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~~ll~a 276 (419)
T 3rjo_A 204 LLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVT--LAVFAVGAQ--STEGWDFLYSKYQFS---LSSTEKSQIEFA 276 (419)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGH--HHHHHHHTT--SHHHHHHHHHHHHHC---CCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcc--eeEEeeeeC--CHHHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 344555555 567788888776542 444432 111111122 233344555555442 344455677788
Q ss_pred HHccChHHHHHHHHHHHHHcC
Q 039637 75 FCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g 95 (159)
++...+.....++++......
T Consensus 277 L~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 277 LCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HTTCSCHHHHHHHHHHHHHTS
T ss_pred cCCCCCHHHHHHHHHHHhCCC
Confidence 877788877777777776544
No 305
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=72.20 E-value=14 Score=22.38 Aligned_cols=101 Identities=13% Similarity=-0.027 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 039637 45 DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (159)
..+.+..++..+.+.|..-|..--...+....+.| .....+-.++.+.|+..+ +....+..+.. ...+.|..+.+
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~--~i~~al~~~~~-d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE--ATEKAMREADI-DWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH--HHHHHHHHHCC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH--HHHHHHHHcCH-hHHHHHHHHHH
Confidence 45667888899999988655544456666665544 234577788889998543 33334443322 34566777766
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 125 MLRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
+-.....+++......++..+...|-
T Consensus 120 kk~~~~~~~~~~~~~K~~~~L~rrGF 145 (159)
T 3c1d_A 120 RKYGEPLPTVFSEKVKIQRFLLYRGY 145 (159)
T ss_dssp HHHCSSCCCSHHHHHHHHHHHHHTTC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 44333334556677888898888884
No 306
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=71.93 E-value=3.6 Score=23.95 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=26.8
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD 45 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 45 (159)
++.+...+..-.|.++++.+.+.++..+..|---.++.+.+.|-
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34444455556677777777766666666665555666666553
No 307
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.22 E-value=17 Score=23.13 Aligned_cols=67 Identities=6% Similarity=0.058 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (159)
.|-..++.+ ..+...++.++|..|...|+--. .-.|..-...+...|++.+|.++|..=++.+-.|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444444443 23446789999999999988554 45566777788889999999999999888877774
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=70.74 E-value=14 Score=25.41 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC-hHHHHHHHHHHHHHcCCCCc
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK-MYMLAYRTMVDMHRKGHQPE 99 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~ 99 (159)
.+.++.-|...|+.++|...++++...... .......+..+.-+.. .-+.+.+++..+.+.|+-+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 467888899999999999999988542110 1122333333333322 33455677777777665433
No 309
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=69.59 E-value=8.1 Score=22.75 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=29.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
.++..+...+..-.|..+++.+...+...+..|.-..+..+.+.|.+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 45555555555566777777776666666666666666666666654
No 310
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=69.23 E-value=41 Score=26.71 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=52.0
Q ss_pred hHHHhcCC---HHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHH
Q 039637 3 SAFCRSGC---FEETKQLAGDFEAKY----DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYF 75 (159)
Q Consensus 3 ~~~~~~~~---~~~A~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 75 (159)
...|+.|. .++|.+.|+.....+ ++||. -+.+...-.+.|..++-..+++..... .+..--..++.++
T Consensus 694 ~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~aL 768 (909)
T 4fke_A 694 STACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRSAL 768 (909)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHHHh
Confidence 34455554 457888888776432 34443 333334444667766666677766653 3334445677887
Q ss_pred HccChHHHHHHHHHHHHH
Q 039637 76 CKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~ 93 (159)
+...+.....++++..+.
T Consensus 769 ~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 769 ACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp TTCCCHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 777887777777776654
No 311
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=68.33 E-value=10 Score=19.31 Aligned_cols=46 Identities=9% Similarity=0.054 Sum_probs=26.2
Q ss_pred hHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 039637 67 TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKM 113 (159)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 113 (159)
.++.++..++...-.+.++..+++..+.|. .+..+|---++..++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 345556666666666666666666666653 4555555555554443
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=67.67 E-value=22 Score=23.02 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=42.8
Q ss_pred HHHHHHHHHhHhcCCCCC-hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc
Q 039637 47 ESVMHVMRKLDELAISPD-YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE 99 (159)
Q Consensus 47 ~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (159)
+++.++|..|...|+--. .-.|..-...+...|++.+|.++|..=++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 467789999999988554 45566777778889999999999998888777764
No 313
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=66.15 E-value=8.9 Score=22.58 Aligned_cols=108 Identities=8% Similarity=-0.027 Sum_probs=50.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh---hHHHHHHHHHc
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKY---DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN---TFHILIKYFCK 77 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~ 77 (159)
..++.|+.+.+..+++. .+..+ +..-++.+ ...+..|+.+- ++.+.+.|..++.. -.+.+.. .+.
T Consensus 14 ~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~-A~~ 84 (165)
T 3twr_A 14 EAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPL-HFAAGYNRVSV----VEYLLQHGADVHAKDKGGLVPLHN-ACS 84 (165)
T ss_dssp HHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHH-HHH
T ss_pred HHHHhCCHHHHHHHHHc---CCCCccccccCCCCHH-HHHHHcChHHH----HHHHHhcCCCCCccCCCCCCHHHH-HHH
Confidence 44566777666665432 22211 11112333 33456666543 34444556555432 2334433 444
Q ss_pred cChHHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHccCCHHHHHHHHH
Q 039637 78 EKMYMLAYRTMVDMHRKGHQPEEELC--SSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~ 124 (159)
.|+.+ +.+.+.+.|..++.... .+.+...++.|+.+-+..+++
T Consensus 85 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 129 (165)
T 3twr_A 85 YGHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129 (165)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 56654 44455556655442211 133444556677775555543
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=65.92 E-value=34 Score=24.57 Aligned_cols=38 Identities=11% Similarity=-0.157 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 113 MRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 113 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
.++.+.|..++.+|...|..|....-..++.+.-..|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 46777777777777776666655444444444444443
No 315
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=65.73 E-value=25 Score=23.92 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=30.5
Q ss_pred HHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCC
Q 039637 51 HVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQ 97 (159)
Q Consensus 51 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 97 (159)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 34455556667776677776776666655567777777777766543
No 316
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=65.37 E-value=15 Score=23.03 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=31.3
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDV---VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPD 64 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 64 (159)
+...++.|+.+-+..+++.+.+.|..++. .-++. +...+..|+.+-+ +.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~g~~~~ 73 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPSVV----RLLVTAGASPM 73 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHHHH----HHHHHcCCCcc
Confidence 34567788888888887776666544332 12223 3333455655433 33444555443
No 317
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=65.16 E-value=24 Score=22.61 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=10.0
Q ss_pred ChHHHHHHHHHHHHHcCCCCc
Q 039637 79 KMYMLAYRTMVDMHRKGHQPE 99 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~ 99 (159)
.|++.|+-++.+|++.|-.|.
T Consensus 49 SDpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 445555555555554444333
No 318
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=64.45 E-value=32 Score=25.74 Aligned_cols=70 Identities=7% Similarity=-0.052 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDA 154 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (159)
..+...++++.+-..-+..--.-++..|.+.|-.+.|.++++.+-..-.. +...| ..+..|+|+|+.+..
T Consensus 499 ~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 499 AKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 34444444444322224456677899999999999999999988764444 33355 677888999987653
No 319
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.41 E-value=44 Score=25.29 Aligned_cols=111 Identities=8% Similarity=-0.038 Sum_probs=70.1
Q ss_pred CChHHHHHHHHHhHhcCCCCChhhHH----HHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 039637 44 GDMESVMHVMRKLDELAISPDYNTFH----ILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119 (159)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 119 (159)
.+.+.|..+|........ .+..... .+.......+...++..++....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 377889999988875432 2332222 22223333442445666776655433 3333444555556678999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 120 LSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
...|+.|...... .....-.+-.++.+.|+.++|..+|
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~ 342 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEIL 342 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999998763222 3444567778888899999988765
No 320
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.16 E-value=34 Score=23.91 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=35.9
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCC
Q 039637 68 FHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMR--AHSEALSVYNMLRYSKRS 132 (159)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~ 132 (159)
...++.-|...++.++|.+.++++..- ......+...+..+..+.+ ..+...+++..+...++-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p-~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCT-TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCC-cchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 345667777777777777777777532 1122344455555555543 234555666666655543
No 321
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=64.08 E-value=34 Score=23.91 Aligned_cols=78 Identities=12% Similarity=0.220 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCC----hhhHHHHHHHHHccC-hHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPD----YNTFHILIKYFCKEK-MYMLAYRTMVDMHRKGHQPEEELCSSL 106 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~l 106 (159)
.-..++.-|...|+.++|...++++.. |+ ...+..+..++-+.. .-+.+..++..+...++-+.......+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf 89 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAF 89 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 456789999999999999999999864 53 233344444444432 224556667777776654433333334
Q ss_pred HHHHHcc
Q 039637 107 IFHLGKM 113 (159)
Q Consensus 107 i~~~~~~ 113 (159)
...+...
T Consensus 90 ~~lle~l 96 (364)
T 3l6a_A 90 LNVLDQC 96 (364)
T ss_dssp HHHHHTH
T ss_pred HHHHhhC
Confidence 3333333
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=62.99 E-value=28 Score=22.54 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHH--H-----HHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 11 FEETKQLAGDFEAKYDKYDVV--L-----LNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~--~-----~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
.+.|+-+|+.+.+....++.. . --..+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 356666676666543222211 1 11233456667777777777766655
No 323
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=62.02 E-value=4.3 Score=26.12 Aligned_cols=117 Identities=7% Similarity=-0.050 Sum_probs=65.8
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHH--hcCChHHHHHHHHHhHhcC---------CC-C
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVV-------LLNSMLCAYC--RTGDMESVMHVMRKLDELA---------IS-P 63 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~---------~~-~ 63 (159)
...++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-...+ +. .
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 44567888888888888777766655532 3455555542 5677777766666543211 11 1
Q ss_pred ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHH----------------HHHHHHHHHccCCHHHHHHHHH
Q 039637 64 DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEEL----------------CSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----------------~~~li~~~~~~g~~~~a~~~~~ 124 (159)
|..-.+.|..+ +..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 90 d~~g~t~L~~A-~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 90 YYRGQTALHIA-IERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SEESBCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCHHHHH-HHcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11333444444 4556654 4455555665555432 2244555566788776665555
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=61.48 E-value=45 Score=24.43 Aligned_cols=112 Identities=8% Similarity=-0.083 Sum_probs=76.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHH
Q 039637 8 SGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 87 (159)
.++.+-|.++- .+.|.+--...|..-.+.+...|++++|..+-..-.+ |+-.+..|.+.+-..-...|...-.+.+
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 36677777663 5556655566687778889999999999888765543 5566777777666655566777777888
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 039637 88 MVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 88 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (159)
|..+.+.|. .+..----+++.-..+|+.+-..+++.
T Consensus 418 F~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 418 FGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 888887763 554433445666666777776666553
No 325
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=61.42 E-value=22 Score=22.07 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=42.9
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHh
Q 039637 98 PEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 98 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (159)
|....++.++..++.-.-++.++..+.+....| ..+..+|..-++.+++..-+..|.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~ral 165 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLVRWH 165 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334667888888888888888888888887765 457778888888887766655553
No 326
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.25 E-value=37 Score=23.14 Aligned_cols=70 Identities=10% Similarity=0.254 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC--hHHHHHHHHHHHHHcCCCCcHHH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK--MYMLAYRTMVDMHRKGHQPEEEL 102 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~ 102 (159)
..+.++.-|...|+.++|...++++...... .......+..+.-+.+ .-+...+++..+.+.|+-+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3567888898999999999999998641110 1233345555565543 24566788888887776544333
No 327
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=60.24 E-value=20 Score=23.15 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=28.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMES 48 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 48 (159)
-.|.++|.+++|.+++++....... +...-+.|+..-.+.+.++.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s-~~kLr~kL~~II~~Kd~~H~ 166 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPT-TQKLRNDLLNIIREKNLAHP 166 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGG-GHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCC-chHHHHHHHHHHhccCcccH
Confidence 4688999999999999998865322 23344444444444443333
No 328
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=59.43 E-value=24 Score=21.96 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=11.6
Q ss_pred hHHHhcCCHHHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGD 20 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~ 20 (159)
...++.|+++....++..
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 345667777777766654
No 329
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=59.43 E-value=24 Score=21.91 Aligned_cols=56 Identities=7% Similarity=0.004 Sum_probs=44.6
Q ss_pred CChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 039637 63 PDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119 (159)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 119 (159)
|....++.++..++...-.+.++..+.+.+..|. .+..+|---++.+++..-+..|
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~~ra 164 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFLVRW 164 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999999999999999999985 6778887777777765544443
No 330
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.31 E-value=29 Score=21.20 Aligned_cols=53 Identities=6% Similarity=-0.029 Sum_probs=36.9
Q ss_pred HccChHHHHHHHHHHHHHcCCCC--cHHHHHHHHH-H-----HHccCCHHHHHHHHHHHHh
Q 039637 76 CKEKMYMLAYRTMVDMHRKGHQP--EEELCSSLIF-H-----LGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 128 (159)
...|++-+|-++++..-.....+ +...|..||. . ..+.|+...|.+++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34488888888888888765445 5556666666 2 2346888888888886653
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.52 E-value=72 Score=25.52 Aligned_cols=48 Identities=19% Similarity=0.050 Sum_probs=34.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 039637 102 LCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCK----ALHEKILHILISGK 149 (159)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 149 (159)
=|.-++..+.+.+.++-+.++-+...+.-.+-|. ..+..++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5678899999999999999888866643222233 35777777777655
No 332
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=57.48 E-value=74 Score=25.65 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=8.6
Q ss_pred hcCChHHHHHHHHHhHh
Q 039637 42 RTGDMESVMHVMRKLDE 58 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~~ 58 (159)
-.|+.+.+..+.+.+..
T Consensus 536 ~~g~~e~~~~li~~L~~ 552 (963)
T 4ady_A 536 NYGRQELADDLITKMLA 552 (963)
T ss_dssp TTTCGGGGHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHh
Confidence 44555555555555443
No 333
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=56.85 E-value=14 Score=23.55 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 11 FEETKQLAGDFEAKYDKYDVVL----LNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
.+.|+.+|+.+......+-... --..+..|.+.|.+++|.++|++.-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 3567777777665544222111 12334567888889999888888554
No 334
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=56.77 E-value=12 Score=23.97 Aligned_cols=117 Identities=9% Similarity=-0.025 Sum_probs=63.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHh--cCChHHHHHHHHHhHhcCCC----------C
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYD-------VVLLNSMLCAYCR--TGDMESVMHVMRKLDELAIS----------P 63 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~----------~ 63 (159)
...++.|+.+.+..+++.+.+.|..++ ..-++.|..+... .|+.+-+..+++.-...+.. .
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 86 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDE 86 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCST
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccc
Confidence 445777888887778877777765443 3345555555432 27776666666554332211 1
Q ss_pred ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHH---------------HHHHHHHHHccCCHHHHHHHHH
Q 039637 64 DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEEL---------------CSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---------------~~~li~~~~~~g~~~~a~~~~~ 124 (159)
|..-.+.|..+ +..|+.+- .+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 87 d~~g~t~L~~A-~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 87 FYQGHSALHIA-IEKRSLQC----VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp TTTTCCHHHHH-HHTTCHHH----HHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCHHHHH-HHcCCHHH----HHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 12344444444 45566544 445555565544321 2234445566788776665555
No 335
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=56.15 E-value=52 Score=24.69 Aligned_cols=88 Identities=8% Similarity=-0.006 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHh--cCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 039637 31 VLLNSMLCAYCR--TGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIF 108 (159)
Q Consensus 31 ~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 108 (159)
..|..-+..+.. ..+.........++...=---+..--.-++..|.+.|-.+.|.+++..+-.+-.. +-..+ ..+.
T Consensus 480 sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~ 557 (570)
T 3f3f_C 480 ELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIA 557 (570)
T ss_dssp TTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------
T ss_pred cchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHH
Confidence 344444444443 3344445555555554311223455667888888889888898888888765433 33344 5667
Q ss_pred HHHccCCHHHHH
Q 039637 109 HLGKMRAHSEAL 120 (159)
Q Consensus 109 ~~~~~g~~~~a~ 120 (159)
.|.|.|+++...
T Consensus 558 ~f~rA~~~~~Vk 569 (570)
T 3f3f_C 558 NFSRAGKYELVK 569 (570)
T ss_dssp ------------
T ss_pred HHHHcCChhhcc
Confidence 788888877643
No 336
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=55.88 E-value=44 Score=22.51 Aligned_cols=73 Identities=8% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH----HccCCHHHHHHHHH
Q 039637 51 HVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL----GKMRAHSEALSVYN 124 (159)
Q Consensus 51 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~~~a~~~~~ 124 (159)
++++.+.+.|+.|...++.-++..+++.=.++.+.++++.+...|...-..+.-+++..+ .+ .+.++....++
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~-~d~~~~l~~l~ 251 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQ-ADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHT-CCHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 455666777888888888888888877767888888888888777432211222222221 22 36777777775
No 337
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.41 E-value=33 Score=20.95 Aligned_cols=60 Identities=5% Similarity=-0.112 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhcCCCC--ChhhHHHHHH-H-----HHccChHHHHHHHHHHHHH
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISP--DYNTFHILIK-Y-----FCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~m~~ 93 (159)
|..-+..| ..|++-+|.++|+..-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333333 4499999999999988765555 5567777777 3 2446899999999888765
No 338
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=55.33 E-value=1.7 Score=32.07 Aligned_cols=114 Identities=12% Similarity=0.106 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFH 109 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 109 (159)
+.+|..+..+..+.+...+|++.|-+ .-|+..|..++.++.+.|.+++..+++....+....| .+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHH
Confidence 34577777777777777777665521 2466778888888888898888888887766654333 455678888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcHHHHhhhh
Q 039637 110 LGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 110 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
|++.++..+-..++ . .|+..-...+-+-|...|.++.|.-+|
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKily 167 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLY 167 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTG
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHH
Confidence 88888876544332 2 245545567788888888888776654
No 339
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=55.20 E-value=24 Score=19.29 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHH
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEAL 120 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 120 (159)
...+.+.+++..+.++|. .+|..++.++...|+.+-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHH
Confidence 456677777777766552 26666777776666665554
No 340
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=54.70 E-value=57 Score=23.46 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCC-C------CCh----------
Q 039637 11 FEETKQLAGDFEA--------KYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAI-S------PDY---------- 65 (159)
Q Consensus 11 ~~~A~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~------~~~---------- 65 (159)
.++..++++...+ .++..+......++.. -.|+..+++.+++.+..... . .+.
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 3455555555543 2334566666666665 46788888877777664321 0 111
Q ss_pred --------hhHHHHHHHHH---ccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 039637 66 --------NTFHILIKYFC---KEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRA 115 (159)
Q Consensus 66 --------~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 115 (159)
..+..+++++. +.++.+.|+.++..|.+.|..|....-..++.+....|.
T Consensus 245 ~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 245 SARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 11222444443 347899999999999999877665444555555555553
No 341
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=54.54 E-value=29 Score=19.97 Aligned_cols=45 Identities=7% Similarity=-0.130 Sum_probs=28.9
Q ss_pred HHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHH
Q 039637 49 VMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHR 93 (159)
Q Consensus 49 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (159)
...+|+++....+.|++..--.-+..+...+++..|.++.-.+..
T Consensus 45 L~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 45 LALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666655544433444445667888888888877775
No 342
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=53.62 E-value=13 Score=21.50 Aligned_cols=111 Identities=10% Similarity=0.001 Sum_probs=58.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh---hhHHHHHHHHHcc
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDK-YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY---NTFHILIKYFCKE 78 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~ 78 (159)
...++.|+.+.+..+++. ....+. .|..-++.+.. +..|+.+-+..+ .+.|..++. ...+.+..+ +..
T Consensus 7 ~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~--~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A-~~~ 78 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV--MMFGSTAIALEL----LKQGASPNVQDTSGTSPVHDA-ART 78 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH--SCTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHH-HHT
T ss_pred HHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH--HHcCCHHHHHHH----HHCCCCCCCcCCCCCCHHHHH-HHc
Confidence 445778898888888766 211111 23333344443 667776655444 445555543 334444444 445
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHccCCHHHHHHHHHH
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEE--LCSSLIFHLGKMRAHSEALSVYNM 125 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~ 125 (159)
|+.+ +.+.+.+.|..++.. .-.+.+...++.|+.+-+..+++.
T Consensus 79 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 79 GFLD----TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp TCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred CcHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence 6654 344455566544321 112334445567887776666654
No 343
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=53.30 E-value=38 Score=21.04 Aligned_cols=82 Identities=10% Similarity=-0.091 Sum_probs=44.3
Q ss_pred HhcCChHHHHHHHHHhHhcCCCCCh---hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCC---------cHHHHHHHHH
Q 039637 41 CRTGDMESVMHVMRKLDELAISPDY---NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQP---------EEELCSSLIF 108 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~---------~~~~~~~li~ 108 (159)
++.|+.+-+ +.+.+.|..++. .-. +.+...+..|+.+-+..+++.+.+.|..+ |.... +.+.
T Consensus 129 ~~~~~~~~v----~~Ll~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~-tpl~ 202 (232)
T 2rfa_A 129 ACVGSEEIV----RLLIEHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFK 202 (232)
T ss_dssp HHHTCHHHH----HHHHHTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC-CHHH
T ss_pred HHcCCHHHH----HHHHHCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCC-CHHH
Confidence 445554433 334445655543 222 34455556677777767777777766433 22222 3344
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 039637 109 HLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~ 128 (159)
..++.|+.+-+..+++.-..
T Consensus 203 ~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 203 LAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCcc
Confidence 55667777776666665443
No 344
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=53.09 E-value=42 Score=21.50 Aligned_cols=103 Identities=11% Similarity=0.003 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 039637 45 DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (159)
..+.+..++..+.+.|.--|..--...+....+.+.+ ....+-.++.+.|+.++ +....+..+......+.|..+.+
T Consensus 91 ~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~~--~I~~al~~~~~~~e~e~a~~l~~ 167 (221)
T 3d5l_A 91 PEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGES--DIDDALTQFTPEVQAELAKKLAL 167 (221)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCHH--HHHHHGGGCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCHH--HHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456777888888888765554444566655542222 23566788888887543 22222222211123445556665
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCc
Q 039637 125 MLRYS-KRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 125 ~~~~~-~~~~~~~~~~~l~~~~~~~g~ 150 (159)
+-... ...++......++..+.+.|-
T Consensus 168 Kk~~~~~~~~~~~~k~K~~~~L~rrGF 194 (221)
T 3d5l_A 168 KLFRRYRNQPERRREQKVQQGLTTKGF 194 (221)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccCCChHHHHHHHHHHHHhCCC
Confidence 44322 222234456788888888773
No 345
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=52.96 E-value=40 Score=21.21 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=55.7
Q ss_pred HHHHHHH-HHHhcCChHHHHHHHHHhHhcCCCCChhhH-HHHHHHHHccChHHHHHHHHHHHHHcCCC--C---------
Q 039637 32 LLNSMLC-AYCRTGDMESVMHVMRKLDELAISPDYNTF-HILIKYFCKEKMYMLAYRTMVDMHRKGHQ--P--------- 98 (159)
Q Consensus 32 ~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~--------- 98 (159)
-|..++. .+.-.|.+..++-++..+ |+.|- --=--+|-+.+++..|...++.+....+. |
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~l-------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~f 106 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKL-------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEM 106 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTC-------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccee
Confidence 4555544 344577787777766432 22221 11123566778999999999999854433 1
Q ss_pred -----c-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 039637 99 -----E-EELCSSLIFHLGKMRAHSEALSVYNM 125 (159)
Q Consensus 99 -----~-~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (159)
| ...++.+...+-+.|+.++|++.+..
T Consensus 107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 107 FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 2 34567777778888999999998753
No 346
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.91 E-value=73 Score=23.63 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcC-CCCCh--hhHH-HHHHHHHccChHHHHHHHHHHHHHc
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELA-ISPDY--NTFH-ILIKYFCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~--~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (159)
...+|.+++.|...+.++.|..+..+..--. -.+|. .+|. .+-..+.-.+++.+|.+.+.+..+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4578999999999999999999998874210 01111 2222 2345567779999999999888765
No 347
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=50.40 E-value=19 Score=21.25 Aligned_cols=113 Identities=10% Similarity=0.033 Sum_probs=53.5
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh---hhHHHHHHHHHcc
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY---NTFHILIKYFCKE 78 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~ 78 (159)
+...++.|+.+.+..+++.-...--.+|..-++.|.. .++.|+.+-+..++ +.|..++. .-.+.| ...+..
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L-~~A~~~ 79 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW-ASAFGEIETVRFLL----EWGADPHILAKERESAL-SLASTG 79 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHH-HHHTTCHHHHHHHH----HHTCCTTCCCTTCCCHH-HHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHH-HHHcCCHHHHHHHH----HcCCCchhhcccCCCHH-HHHHHC
Confidence 3456777888777666543111000113233334443 35667665544444 44554443 223333 344455
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHccCCHHHHHHHHH
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEEL--CSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 124 (159)
|+.+ +.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 80 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 123 (172)
T 3v30_A 80 GYTD----IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123 (172)
T ss_dssp TCHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 6654 4445555565444221 1223344456677775555554
No 348
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=50.16 E-value=34 Score=23.41 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=18.1
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 89 VDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 89 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..+.+.|+.|...++.-++..+.+.=.++.+.++|+.+..
T Consensus 217 ~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~ 256 (334)
T 2qq8_A 217 AHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCR 256 (334)
T ss_dssp HHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 349
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=50.13 E-value=36 Score=23.33 Aligned_cols=113 Identities=13% Similarity=0.070 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhC---CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 11 FEETKQLAGDFEAK---YDKY---DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 11 ~~~A~~~~~~~~~~---~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
-++|.-+|..+... ...+ .....-..+..+.+.-++ ++++.+.+.|+.|...++.-++..+++.=.++.+
T Consensus 188 E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~ 263 (345)
T 2qfz_A 188 EADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCT 263 (345)
T ss_dssp HHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHH
T ss_pred HHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHH
Confidence 34566666666543 1222 222233333444444333 4566677788988888888888888887788999
Q ss_pred HHHHHHHHHcCCCCcH-HHH--HHHHHHH----HccCCHHHHHHHHHHHH
Q 039637 85 YRTMVDMHRKGHQPEE-ELC--SSLIFHL----GKMRAHSEALSVYNMLR 127 (159)
Q Consensus 85 ~~~~~~m~~~g~~~~~-~~~--~~li~~~----~~~g~~~~a~~~~~~~~ 127 (159)
.++|+.+...|..... ..+ -+++..+ .+..+.++...+++.+.
T Consensus 264 lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p 313 (345)
T 2qfz_A 264 IRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLP 313 (345)
T ss_dssp HHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCS
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Confidence 9999999988754332 222 2333222 22466777776665443
No 350
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.03 E-value=64 Score=22.70 Aligned_cols=84 Identities=7% Similarity=-0.045 Sum_probs=47.8
Q ss_pred HHHHHccChHHHHHHHHHHHHHcC----------------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh----C-C
Q 039637 72 IKYFCKEKMYMLAYRTMVDMHRKG----------------HQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY----S-K 130 (159)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~g----------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~ 130 (159)
+.++....+.+++.+++.++...- ...-......+...|...|+.+.|..++++... . +
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 444555667778888877664211 012234445667777788888888888776652 1 2
Q ss_pred CCCC--HHHHHHHHHHHHhcCcHHHHh
Q 039637 131 RSMC--KALHEKILHILISGKLLKDAY 155 (159)
Q Consensus 131 ~~~~--~~~~~~l~~~~~~~g~~~~A~ 155 (159)
..|. ...|......|...+++..++
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y 189 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFY 189 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2222 223445555555566655543
No 351
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=49.88 E-value=40 Score=22.36 Aligned_cols=114 Identities=10% Similarity=-0.030 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---C---hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH---H
Q 039637 13 ETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG---D---MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM---L 83 (159)
Q Consensus 13 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~---~ 83 (159)
.|.++++.+.+ |.+++..+|..++.++.... + +.+|.+.+..+.- ..|.....+.+.+-. ...+.+ .
T Consensus 94 ~A~r~L~~LLe-~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv--~~~~~~V~~~l~sLl-~Skd~~vK~a 169 (265)
T 3b2a_A 94 KALRALGYLVK-DVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQP--LEDSKLVRTYINELV-VSPDLYTKVA 169 (265)
T ss_dssp HHHHHHHHHHT-TCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB--SCCCHHHHHHHHHHH-TCSSHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCc--ccchHHHHHHHHHHH-hCCChhHHHH
Confidence 46666666664 56779999999999887543 2 4556666666622 234445555555544 444433 4
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHH---HHHHHccCC---HHHHHHHHHHHHhCCCC
Q 039637 84 AYRTMVDMHRKGHQPEEELCSSL---IFHLGKMRA---HSEALSVYNMLRYSKRS 132 (159)
Q Consensus 84 a~~~~~~m~~~g~~~~~~~~~~l---i~~~~~~g~---~~~a~~~~~~~~~~~~~ 132 (159)
|+..+-.+.... -|+..++.+ +.-+.+..+ .+.|...++.+.....+
T Consensus 170 gl~~L~eia~~S--~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~ 222 (265)
T 3b2a_A 170 GFCLFLNMLNSS--ADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL 222 (265)
T ss_dssp HHHHHHHHGGGC--SSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHhhccc--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc
Confidence 456666665321 111122111 222333334 45677777777655433
No 352
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=49.75 E-value=65 Score=22.69 Aligned_cols=63 Identities=6% Similarity=-0.003 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHccChH--HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 65 YNTFHILIKYFCKEKMY--MLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 65 ~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..||..+|.-....+++ +++..+++.+.... .++..+-..|+..+.|--..++-.-+.+.|.+
T Consensus 23 ~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~-~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~ 87 (377)
T 3r88_A 23 VPSWPQILGRLTDNRDLARGQAAWAMDQIMTGN-ARPAQIAAFAVAMTMKAPTADEVGELAGVMLS 87 (377)
T ss_dssp -CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 34666666666555443 46666666666532 34555555555555555556665555555554
No 353
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=49.53 E-value=39 Score=20.06 Aligned_cols=112 Identities=11% Similarity=-0.035 Sum_probs=53.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh---hHHHHHHHHHccC
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN---TFHILIKYFCKEK 79 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~ 79 (159)
...++.|+.+.+..+++.-...--.++..-++.|. ..++.|+.+-+ +.+.+.|..++.. -.+.|. ..+..|
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~ 83 (179)
T 3f6q_A 10 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLH-WACREGRSAVV----EMLIMRGARINVMNRGDDTPLH-LAASHG 83 (179)
T ss_dssp HHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHH-HHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHH-HHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHH-HHHHcCcHHHH----HHHHHcCCCCCCcCCCCCCHHH-HHHHcC
Confidence 34567788877776654321100112333333333 34566666444 4444556655532 233443 344556
Q ss_pred hHHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHccCCHHHHHHHHH
Q 039637 80 MYMLAYRTMVDMHRKGHQPEEELC--SSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~ 124 (159)
+.+ +.+.+.+.|..++.... .+.+...+..|+.+-+..+++
T Consensus 84 ~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 126 (179)
T 3f6q_A 84 HRD----IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126 (179)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHH----HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 654 44555556655443211 233444556677665555443
No 354
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=48.72 E-value=1.2e+02 Score=25.56 Aligned_cols=79 Identities=9% Similarity=-0.024 Sum_probs=51.1
Q ss_pred HHHHHHHHccCh---------------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 039637 69 HILIKYFCKEKM---------------YMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSM 133 (159)
Q Consensus 69 ~~ll~~~~~~~~---------------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 133 (159)
+.|+.++++.|. .+...+.|.++.+---.-|.......+.--.+++++-.|.+++.++.+.. |
T Consensus 1238 ~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~ 1315 (1354)
T 3lxu_X 1238 NTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--R 1315 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--c
Confidence 678888877443 23444555555543211233333333444447899999999999998654 6
Q ss_pred CHHHHHHHHHHHHhcC
Q 039637 134 CKALHEKILHILISGK 149 (159)
Q Consensus 134 ~~~~~~~l~~~~~~~g 149 (159)
+...|..++..+...|
T Consensus 1316 ~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1316 TRDHFVELAAINGALG 1331 (1354)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHcC
Confidence 8889888888776655
No 355
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=48.69 E-value=22 Score=17.06 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=14.4
Q ss_pred HHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHH
Q 039637 51 HVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTM 88 (159)
Q Consensus 51 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (159)
+.+.+|...|+.-.-.-.+.|+. .+.|+...|++++
T Consensus 12 ~al~qMl~MGF~negGWLt~LL~--~k~gDI~~aLD~l 47 (52)
T 1q02_A 12 ESLSQMLSMGFSDEGGWLTRLLQ--TKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHTTTCCCTTSHHHHHHH--HTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCccccHHHHHHH--HccCCHHHHHHHh
Confidence 33444555554322222233332 2345555554443
No 356
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=48.50 E-value=43 Score=20.25 Aligned_cols=100 Identities=10% Similarity=0.031 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 039637 46 MESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125 (159)
Q Consensus 46 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (159)
.+.+..++..+.+.|..-|..--...+....+.| .....+-.++.+.|+..+ +....+..+. ....+.|..++++
T Consensus 48 ~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~--~G~~~I~~eL~~KGI~~~--~I~~al~~~~-~de~e~a~~l~~K 122 (162)
T 3dfg_A 48 PEAAQAAVERLAGEGWQDDVRFAASVVRNRASSG--YGPLHIRAELGTHGLDSD--AVSAAMATFE-GDWTENALDLIRR 122 (162)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTT--CCHHHHHHHHHHTTCCHH--HHHHHHTTCC-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc--ccHHHHHHHHHHcCCCHH--HHHHHHHhCc-HhHHHHHHHHHHH
Confidence 3456667777777777544433344555544432 223567788888887543 4444444332 2345667677765
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCc
Q 039637 126 LRYSKRSMCKALHEKILHILISGKL 150 (159)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (159)
-.....+.+......++..+.+.|-
T Consensus 123 k~~~~~~~~~~~k~K~~~~L~rrGF 147 (162)
T 3dfg_A 123 RFGEDGPVDLAQRRKAADLLARRGF 147 (162)
T ss_dssp HHCTTCCCSHHHHHHHHHHHHHTTC
T ss_pred hcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3322234456677888899988884
No 357
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=47.86 E-value=29 Score=22.85 Aligned_cols=63 Identities=11% Similarity=-0.103 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCCCCHHH---------HHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC
Q 039637 16 QLAGDFEAKYDKYDVVL---------LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (159)
Q Consensus 16 ~~~~~~~~~~~~~~~~~---------~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 79 (159)
..++.+.++|..|+... ...+..+ ...|+.+.+.+.+++....|..|.......++.+..+.|
T Consensus 14 ~~~~~~~~~G~~i~~~~~~l~p~~~~~~~l~~a-l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG 85 (258)
T 2i2x_B 14 TRYNVALEKALTPEEAAEELYPKDELIYPIAKA-IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVI 85 (258)
T ss_dssp CCHHHHHSCSSCHHHHHHHHSCCCTTSHHHHHH-HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHhCCcHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33444555555544332 2333333 456788888888888888877666555555666655444
No 358
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=47.68 E-value=61 Score=21.79 Aligned_cols=84 Identities=7% Similarity=-0.041 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHhHhcCCCCChhhH--H------HHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH
Q 039637 45 DMESVMHVMRKLDELAISPDYNTF--H------ILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (159)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~~~~~~~--~------~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (159)
+-++|..+|..+......++..+- . ..+..+.+..++ +++..+.+.|+.|...++.-++..+.+.=.+
T Consensus 130 ~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 205 (310)
T 3hzj_A 130 PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLP----DLHSHFSDLNLEAHMYASQWFLTLFTAKFPL 205 (310)
T ss_dssp CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCH
T ss_pred CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhCh----HHHHHHHHcCCChHHHHHHHHHHHHhccCCH
Confidence 456788888877654212222111 1 112223332222 4567777788888888888888888887779
Q ss_pred HHHHHHHHHHHhCCCC
Q 039637 117 SEALSVYNMLRYSKRS 132 (159)
Q Consensus 117 ~~a~~~~~~~~~~~~~ 132 (159)
+.+.++|+.+...|..
T Consensus 206 ~~~~riwD~~l~~g~~ 221 (310)
T 3hzj_A 206 CMVFHIIDLLLCEGLN 221 (310)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCcH
Confidence 9999999988876643
No 359
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=47.50 E-value=26 Score=23.99 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=47.4
Q ss_pred HHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---ccCCHHHHHHHHHHH
Q 039637 51 HVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLG---KMRAHSEALSVYNML 126 (159)
Q Consensus 51 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~~ 126 (159)
++++.+.+.|+.|...++.-++..+++.=.++.+.++++.+...|...-..+.-+++..+. -..+.++...+++.+
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~l 292 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRL 292 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence 3556677778888888888888888877778888888888887763211111122222221 123566666666544
No 360
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=47.20 E-value=25 Score=17.33 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=17.6
Q ss_pred hcCChHHHHHHHHHhHhcCCCCC
Q 039637 42 RTGDMESVMHVMRKLDELAISPD 64 (159)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~~~ 64 (159)
...|++.|...|.++...|--|.
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~ 54 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPE 54 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCH
Confidence 36799999999999987654443
No 361
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.88 E-value=25 Score=23.06 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=5.6
Q ss_pred HHHHHccCCHHHH
Q 039637 107 IFHLGKMRAHSEA 119 (159)
Q Consensus 107 i~~~~~~g~~~~a 119 (159)
+...+..|+.+-+
T Consensus 133 L~~A~~~~~~~~v 145 (285)
T 3kea_A 133 FYHAVMLNDVSIV 145 (285)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHH
Confidence 3333444554433
No 362
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=45.86 E-value=68 Score=21.79 Aligned_cols=47 Identities=11% Similarity=-0.017 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCC
Q 039637 16 QLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAIS 62 (159)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 62 (159)
++++++.+.|+.|...++.-++..+++.=.++.+..+|+.....|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 45566777888888888899999998887899999999999988754
No 363
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=45.79 E-value=1.4e+02 Score=25.29 Aligned_cols=79 Identities=11% Similarity=0.187 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCC---------------hHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCC
Q 039637 33 LNSMLCAYCRTGD---------------MESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGH 96 (159)
Q Consensus 33 ~~~ll~~~~~~~~---------------~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (159)
-+.|++++++.|. .++..+.|.++.+. +.+ |.......+.--.+.+++..|++++.++.+..
T Consensus 1237 k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k- 1314 (1354)
T 3lxu_X 1237 KNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK- 1314 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 5778888877442 34456666666653 222 22222222333346799999999999999764
Q ss_pred CCcHHHHHHHHHHHHccC
Q 039637 97 QPEEELCSSLIFHLGKMR 114 (159)
Q Consensus 97 ~~~~~~~~~li~~~~~~g 114 (159)
|+...|..++..+...|
T Consensus 1315 -~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1315 -RTRDHFVELAAINGALG 1331 (1354)
T ss_dssp -CCHHHHHHHHHHHHHHS
T ss_pred -ccHHHHHHHHHHHHHcC
Confidence 68888888887776555
No 364
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=45.57 E-value=43 Score=19.45 Aligned_cols=52 Identities=6% Similarity=-0.070 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHH
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRT 87 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 87 (159)
|--.|...+..++.+-|.++++..++.| +...|.+++-.|-..=+++.++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3344666667777788888887777754 566777777777666666655543
No 365
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=45.17 E-value=53 Score=20.39 Aligned_cols=85 Identities=8% Similarity=0.002 Sum_probs=48.3
Q ss_pred HHHHHhcCChHHHHHHHHHhHhcCCCCChh---hHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHH
Q 039637 37 LCAYCRTGDMESVMHVMRKLDELAISPDYN---TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEEL--CSSLIFHLG 111 (159)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~ 111 (159)
+...++.|+.+.+..+++.+.+.|..++.. -.+. +...+..|+.+ +++.+.+.|..++... -...+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 444567889988888888777776665532 2333 44444556654 4455555665543221 123344445
Q ss_pred ccCCHHHHHHHHHHH
Q 039637 112 KMRAHSEALSVYNML 126 (159)
Q Consensus 112 ~~g~~~~a~~~~~~~ 126 (159)
..|+.+....+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 667776666655543
No 366
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=45.10 E-value=86 Score=22.75 Aligned_cols=63 Identities=11% Similarity=0.269 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh--------hhHH-HHHHHHHccChHHHHHHHHHHHHHc
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY--------NTFH-ILIKYFCKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (159)
..|.+...|.+.++..-+..+++.+...+..|+. .+|. -+-..+...+++.+|.+.+.+..+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 5688889999999999999999999887764433 3343 3334456677888887777666653
No 367
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=45.09 E-value=64 Score=21.50 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=8.5
Q ss_pred HHHhcCCHHHHHHHH
Q 039637 4 AFCRSGCFEETKQLA 18 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~ 18 (159)
..++.|+.+-+..++
T Consensus 174 ~A~~~g~~~~v~~LL 188 (337)
T 4g8k_A 174 DAAEKGHVEVLKILL 188 (337)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 345667776554443
No 368
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=45.02 E-value=56 Score=20.58 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=63.0
Q ss_pred HhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHH-HHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 039637 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKY-FCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEA 119 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 119 (159)
.+-.+++.+.=+-.-+ .|+..-|..|+.. .--.|.+..++-++... -..+..-|..| +|.+..+...|
T Consensus 13 ~kY~dYdt~~fLsa~L-----~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l----NT~Ts~YYk~L--Cy~klKdYkkA 81 (242)
T 3kae_A 13 IRYRDYETAIFLAACL-----LPCKPEYRMLMSIVLYLNGEYTRALFHLHKL----NTCTSKYYESL--CYKKKKDYKKA 81 (242)
T ss_dssp HHTTCHHHHHHHHHHH-----C----CTHHHHHHHHHHTTCHHHHHHHHHTC----CBHHHHHHHHH--HHHHTTCHHHH
T ss_pred hhcccccHHHHHHHHH-----ccCChHHHhhhhhhhhhcchHhHHHHHHHhc----chHHHHHHHHH--HHHHHHHHHHH
Confidence 3445555543332222 2443455555433 44567887776655421 12233334443 57888999999
Q ss_pred HHHHHHHHhCCCC----------------CCHH-HHHHHHHHHHhcCcHHHHhhhh
Q 039637 120 LSVYNMLRYSKRS----------------MCKA-LHEKILHILISGKLLKDAYIVV 158 (159)
Q Consensus 120 ~~~~~~~~~~~~~----------------~~~~-~~~~l~~~~~~~g~~~~A~~~~ 158 (159)
...++.+....+. .|.+ .|+.+...|...|+.++|...+
T Consensus 82 ~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~ 137 (242)
T 3kae_A 82 IKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY 137 (242)
T ss_dssp HHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence 9999999865443 2222 4677778888999999998754
No 369
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=44.41 E-value=8.8 Score=22.13 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHhHhcCCC-CChhhHHHHHHHHH---ccChHHHHHHHHHHHHHcCCC
Q 039637 44 GDMESVMHVMRKLDELAIS-PDYNTFHILIKYFC---KEKMYMLAYRTMVDMHRKGHQ 97 (159)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~g~~ 97 (159)
..+.+|.+++..|++.-+. -.+..||..+..+- ..++. .++|..+.+.++.
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 3677888888888875443 25677887776653 22333 4555556655543
No 370
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=43.58 E-value=25 Score=22.72 Aligned_cols=117 Identities=8% Similarity=0.005 Sum_probs=63.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHH--hcCChHHHHHHHHHhHh---------cCCC-C
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKY-------DVVLLNSMLCAYC--RTGDMESVMHVMRKLDE---------LAIS-P 63 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~---------~~~~-~ 63 (159)
...++.|+.+.+..+++...+.+... |..-++.|..+.. +.|+.+-+.-+++.-.. .+.. .
T Consensus 18 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~ 97 (273)
T 2pnn_A 18 FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDS 97 (273)
T ss_dssp HHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCST
T ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccc
Confidence 34567788888888877766555332 3344566666654 35777767666665322 1111 2
Q ss_pred ChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHH----------------HHHHHHHHHccCCHHHHHHHHH
Q 039637 64 DYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEEL----------------CSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----------------~~~li~~~~~~g~~~~a~~~~~ 124 (159)
+..-.+.|..++ ..|+.+- .+.+++.|..++... -.+.+...+..|+.+-+..+++
T Consensus 98 d~~g~tpL~~A~-~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 98 YYKGQTALHIAI-ERRNMTL----VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp TTTTCCHHHHHH-HTTCHHH----HHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHH-HcCCHHH----HHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 334445555444 4566544 444555565544321 2234455566788776665555
No 371
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=43.23 E-value=31 Score=17.04 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=10.8
Q ss_pred cCChHHHHHHHHHhHhcCCCC
Q 039637 43 TGDMESVMHVMRKLDELAISP 63 (159)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~~ 63 (159)
.|+.+.|...+-+|...+..|
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSC
T ss_pred CCCHHHHHHHHHcCcCCCCCC
Confidence 445555555555555444444
No 372
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=42.38 E-value=33 Score=22.82 Aligned_cols=108 Identities=12% Similarity=-0.046 Sum_probs=52.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh---hhHHHHHHHHHc
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKY---DVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY---NTFHILIKYFCK 77 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~ 77 (159)
..++.|+.+....++.. .+..+ |..-.+. +...++.|+.+-+. .+.+.|..++. .-.+.|. ..+.
T Consensus 30 ~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~-~A~~ 100 (351)
T 3utm_A 30 EAARSGNEEKLMALLTP---LNVNCHASDGRKSTP-LHLAAGYNRVRIVQ----LLLQHGADVHAKDKGGLVPLH-NACS 100 (351)
T ss_dssp HHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHH-HHHH
T ss_pred HHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCH-HHHHHHcCCHHHHH----HHHHcCCCCCccCCCCCcHHH-HHHH
Confidence 44667787777766532 23222 2222233 34445667665444 34445655543 3334444 3445
Q ss_pred cChHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHccCCHHHHHHHHH
Q 039637 78 EKMYMLAYRTMVDMHRKGHQPEEEL--CSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 124 (159)
.|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 101 ~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 101 YGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 56654 4455555665544221 1123444456677775555554
No 373
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=42.19 E-value=14 Score=23.02 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=11.2
Q ss_pred hHHHhcCCHHHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGD 20 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~ 20 (159)
...++.|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 7 HQACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 345667777776666544
No 374
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=41.82 E-value=1.1e+02 Score=23.20 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=23.7
Q ss_pred HHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039637 21 FEAKYDK-YDVVLLNSMLCAYCRTGDMESVMHVMRK 55 (159)
Q Consensus 21 ~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 55 (159)
+.+..++ -|..+|-..++-|...|....+.+++..
T Consensus 18 l~e~~~~~~d~~~f~~~~~~~l~~g~~~~l~eilqD 53 (596)
T 4f52_E 18 LEEQDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQN 53 (596)
T ss_dssp CC---------CHHHHHHHHHHSSSCSHHHHHHHTT
T ss_pred hhccCCChhHHHHHHHHHHHHcCcccHHHHHHHHhC
Confidence 4444555 4788999999999999999999888866
No 375
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=40.99 E-value=31 Score=16.47 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=12.3
Q ss_pred ChHHHHHHHHHHHHHcCCCCc
Q 039637 79 KMYMLAYRTMVDMHRKGHQPE 99 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~ 99 (159)
+|...|.++++.+.+.|--|+
T Consensus 7 RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 455666666666666664443
No 376
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.87 E-value=55 Score=19.66 Aligned_cols=144 Identities=8% Similarity=-0.053 Sum_probs=61.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccC
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDV---VLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEK 79 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 79 (159)
...++.|+.+-+. .+.+.|..++. ..++.+ ...+..|+.+-+..+++.-...--.++....+.+ ...+..|
T Consensus 44 ~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~ 117 (201)
T 3hra_A 44 NIAVHNNDIEIAK----ALIDRGADINLQNSISDSPY-LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKG 117 (201)
T ss_dssp HHHHHHTCHHHHH----HHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTT
T ss_pred HHHHHcCCHHHHH----HHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhccCcccccccCCCCcHH-HHHHHcC
Confidence 3456667755444 44555554432 223333 3445667776665555432211011222223333 3444556
Q ss_pred hHHHHHHHHHHHHHcC-CCC---cHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCcHH
Q 039637 80 MYMLAYRTMVDMHRKG-HQP---EEELCSSLIFHLGKMRA-HSEALSVYNMLRYSKRSMCKALH--EKILHILISGKLLK 152 (159)
Q Consensus 80 ~~~~a~~~~~~m~~~g-~~~---~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~ 152 (159)
+.+-+ +.+.+.| ..+ +....+.+..+ +..++ ...-..+++.+.+.|..++.... ...+..-++.|+.+
T Consensus 118 ~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A-~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 192 (201)
T 3hra_A 118 HIDNV----KLLLEDGREDIDFQNDFGYTALIEA-VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192 (201)
T ss_dssp CHHHH----HHHHHHCCCCTTCCCTTSCCHHHHH-HHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred CHHHH----HHHHHcCCCCcCCCCCCCCCHHHHH-HHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHh
Confidence 66544 3444444 222 22233333333 33343 22234455555555544442210 12334444555555
Q ss_pred HHhhh
Q 039637 153 DAYIV 157 (159)
Q Consensus 153 ~A~~~ 157 (159)
-+.-+
T Consensus 193 ~~~~L 197 (201)
T 3hra_A 193 ISKIL 197 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 377
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=40.52 E-value=38 Score=17.41 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc
Q 039637 46 MESVMHVMRKLDELAISPDYNTFHILIKYFCKE 78 (159)
Q Consensus 46 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 78 (159)
.++|...|.+|+...-.....+|...+.....-
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~D 46 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNASWEQAMKMIIND 46 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccC
Confidence 456666666666543334445666666555443
No 378
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=40.15 E-value=22 Score=21.77 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 66 NTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
..++.++..+...+|+.- ..+++++++.-+. .......++.-+.+.|....+.-+|++-..
T Consensus 101 ~~~~~l~~~a~~~~D~~t-~~fle~~l~eq~e-~~~~l~~~l~~l~~~g~~~~g~~~~D~~l~ 161 (173)
T 1s3q_A 101 KRIHELVEMAMQEKDFAT-YNFLQWYVAEQVE-EEASALDIVEKLRLIGEDKRALLFLDKELS 161 (173)
T ss_dssp HHHHHHHHHHHHHTCHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchHhHHhHHHh
Confidence 445556666665566543 3444444432221 333445555555555554556666665443
No 379
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=39.47 E-value=1.4e+02 Score=23.71 Aligned_cols=85 Identities=7% Similarity=-0.008 Sum_probs=50.0
Q ss_pred hHHHhcCC---HHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHH
Q 039637 3 SAFCRSGC---FEETKQLAGDFEAKY----DKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYF 75 (159)
Q Consensus 3 ~~~~~~~~---~~~A~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 75 (159)
...|+.|. .++|.+.|+.....+ ++||.. ..+...-. |..++-..+++..... .+..--..++.++
T Consensus 688 ~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr--~~vy~~~~--g~~~~~~~l~~~y~~~---~~~~ek~~ll~aL 760 (897)
T 2xdt_A 688 LLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVT--LAVFAVGA--QSTEGWDFLYSKYQFS---LSSTEKSQIEFAL 760 (897)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHH--HHHHHHHT--TSHHHHHHHHHHHTTC---CCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchh--hhEEEEec--CCHHHHHHHHHHHHcc---CCHHHHHHHHHHh
Confidence 33455544 567888888776542 233332 22211111 6555555566555542 3344456788888
Q ss_pred HccChHHHHHHHHHHHHHc
Q 039637 76 CKEKMYMLAYRTMVDMHRK 94 (159)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~ 94 (159)
+...+.....++++.....
T Consensus 761 ~c~~~~~~l~~~L~~~~~~ 779 (897)
T 2xdt_A 761 CRTQNKEKLQWLLDESFKG 779 (897)
T ss_dssp TTCCCHHHHHHHHHHHHHC
T ss_pred ccCCCHHHHHHHHHHHhCC
Confidence 8888888888888887753
No 380
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=39.18 E-value=44 Score=17.75 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc
Q 039637 46 MESVMHVMRKLDELAISPDYNTFHILIKYFCKE 78 (159)
Q Consensus 46 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 78 (159)
.+++...|.+|+...-.+...||...+...+.-
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~D 48 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFD 48 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccC
Confidence 455666666666543334445666555554443
No 381
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.37 E-value=69 Score=19.72 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=20.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHH
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVV--LLNSMLCAYCRTGDMESVMHVM 53 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~ 53 (159)
..++.|+.+....++ +.|..++.. .-.+.+...++.|+.+-+.-++
T Consensus 15 ~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 15 KATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 445667765554443 344333211 1112344445666665444333
No 382
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=37.39 E-value=1.6e+02 Score=23.73 Aligned_cols=88 Identities=6% Similarity=-0.021 Sum_probs=48.3
Q ss_pred hHHHhcCC---HHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHc
Q 039637 3 SAFCRSGC---FEETKQLAGDFEAKYDK--YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCK 77 (159)
Q Consensus 3 ~~~~~~~~---~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 77 (159)
...|+.|. .++|.+.|+.....+.. .++..-..+...-. +..++-..+++..... .+..--..++.+++.
T Consensus 756 ~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~Vyc~~~--~~~~~~~~l~~~y~~s---~~~~ek~~ll~aL~c 830 (967)
T 3se6_A 756 KLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGA--QTTAGWNYLLEQYELS---MSSAEQNKILYALST 830 (967)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT--TSHHHHHHHHHHHHHC---SCHHHHHHHHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChhhhhHhHhhhh--ccHHHHHHHHHHHhcc---CCHHHHHHHHHHhcC
Confidence 34455555 66788888887654321 22222222222111 2233344455554442 333445678888888
Q ss_pred cChHHHHHHHHHHHHHcC
Q 039637 78 EKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g 95 (159)
..+.+...++++......
T Consensus 831 t~d~~ll~~~L~~~l~~~ 848 (967)
T 3se6_A 831 SKHQEKLLKLIELGMEGK 848 (967)
T ss_dssp CCCHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHhCcC
Confidence 888888888887777543
No 383
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=37.00 E-value=99 Score=21.14 Aligned_cols=72 Identities=6% Similarity=-0.006 Sum_probs=48.6
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHH--HHHH----HHHhcCcHHHHhhhh
Q 039637 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMC-KALHE--KILH----ILISGKLLKDAYIVV 158 (159)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~--~l~~----~~~~~g~~~~A~~~~ 158 (159)
++..+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|...+ ...|. +++. .+.+..+.++...++
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 445556678888888888888888888889999999999998775543 22222 2222 223346666666554
No 384
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=36.84 E-value=43 Score=20.64 Aligned_cols=47 Identities=13% Similarity=-0.041 Sum_probs=20.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCcHHHHhhh
Q 039637 107 IFHLGKMRAHSEALSVYNMLRYSKRSMCKA--LHEKILHILISGKLLKDAYIV 157 (159)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 157 (159)
+...++.|+.+-+..+++ .|..++.. .-...+...+..|+.+-...+
T Consensus 111 L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 111 LHLAVGKKWFEVSQFLIE----NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHhHHHHHHH----cCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 344456666665444443 33333211 011234444556666554443
No 385
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=36.66 E-value=12 Score=18.25 Aligned_cols=33 Identities=3% Similarity=0.048 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhHhcCCCCChhhHHHHHHHHHcc
Q 039637 46 MESVMHVMRKLDELAISPDYNTFHILIKYFCKE 78 (159)
Q Consensus 46 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 78 (159)
.++...+..+-.+.|..+....++...+.+...
T Consensus 12 ~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleL 44 (55)
T 1dp3_A 12 VYKINKIVERRRAEGAKSTDVSFSSISTMLLEL 44 (55)
T ss_dssp HHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccccHHHHHHHHHHH
Confidence 344445555555555555555555555544443
No 386
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=36.56 E-value=17 Score=21.99 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=6.1
Q ss_pred HHHHHHHHHccChH
Q 039637 68 FHILIKYFCKEKMY 81 (159)
Q Consensus 68 ~~~ll~~~~~~~~~ 81 (159)
|..++..+...+|+
T Consensus 101 ~~~l~~~a~~~~D~ 114 (165)
T 1eum_A 101 INELAHAAMTNQDY 114 (165)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCh
Confidence 44444444444443
No 387
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=36.37 E-value=80 Score=20.95 Aligned_cols=63 Identities=10% Similarity=-0.012 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHhcCC---------hHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGD---------MESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDM 91 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (159)
...-|..+..+|++.|- .+-..++++-.++.|++. =++.|+.+|+--.-.-++++..+++..+
T Consensus 195 ~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIIDk~TG~TrpedV~~ll~~~ 267 (275)
T 3m6y_A 195 HEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIIDKETGNTKVEAVRELLAVV 267 (275)
T ss_dssp THHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBCTTTCCBCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHH
Confidence 44455566666665542 233344444444444321 1244444443333333444444444443
No 388
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=35.34 E-value=1.3e+02 Score=22.10 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=79.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
+.+...|++++|-++--.- ..|+-.+..|.+.+-..-...|+..-.+..|.-+.+.|- .+..----+++.-..+|+.+
T Consensus 369 ~~l~~~g~y~~AA~~aA~s-P~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~ 446 (494)
T 1bpo_A 369 NALFAQGNYSEAAKVAANA-PKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQ-LNKYESLELCRPVLQQGRKQ 446 (494)
T ss_dssp HHHHHTTCHHHHHHHHHHS-GGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHhC-ccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCc-cchHHhhHHhHHHHhccHHH
Confidence 4567889999998885333 345667888888888777777888889999999998874 55544445777777777766
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
-.++++. +..+..+...-. ++ +..+...|..+|.+...
T Consensus 447 llekWl~---e~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a~~ 484 (494)
T 1bpo_A 447 LLEKWLK---EDKLECSEELGD-LV----KSVDPTLALSVYLRANV 484 (494)
T ss_dssp HHHHHHH---HTCSCCCHHHHH-HH----HHHCSHHHHHHHHHHCC
T ss_pred HHHHHHh---cCCccccHHhHh-hh----hhcCHHHHHHHHHHcCC
Confidence 5555443 344555554443 33 44467788888876654
No 389
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=34.65 E-value=79 Score=20.71 Aligned_cols=63 Identities=6% Similarity=-0.031 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhcCC---------hHHHHHHHHHhHhcCCCC-ChhhHHHHHHHHHccChHHHHHHHHHHH
Q 039637 29 DVVLLNSMLCAYCRTGD---------MESVMHVMRKLDELAISP-DYNTFHILIKYFCKEKMYMLAYRTMVDM 91 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (159)
...-|..+..+|++.|- .+-..++++-.++.|++. =++.|+.+|+--.-.-++++..+++..+
T Consensus 172 ~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIIDk~TG~TrpedV~~ll~~~ 244 (249)
T 3m0z_A 172 HRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMT 244 (249)
T ss_dssp THHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBCTTTCCBCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHH
Confidence 44455556666665542 223344444444444311 1244444443333333444444444443
No 390
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=34.55 E-value=78 Score=19.23 Aligned_cols=126 Identities=13% Similarity=0.048 Sum_probs=68.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh---hHHHHHHHHHc-
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDK-YD-VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN---TFHILIKYFCK- 77 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~- 77 (159)
..++.|+++....+++ .++. .+ ..-+ +.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++..
T Consensus 12 ~Aa~~g~~~~~~~l~~----~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~ 86 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFE----KGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86 (186)
T ss_dssp HHHHHSCHHHHHHHHH----HSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHh----cCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 4567788888666653 3332 12 1223 34445566777776677778888888877653 33444444333
Q ss_pred cChHHHHHHHHHHHHHcCCCCcHH---HHHHHHHHHHccCCH-HHHHHHHHHHHh-CCCCCC
Q 039637 78 EKMYMLAYRTMVDMHRKGHQPEEE---LCSSLIFHLGKMRAH-SEALSVYNMLRY-SKRSMC 134 (159)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~-~~a~~~~~~~~~-~~~~~~ 134 (159)
..+.....++.+.+.+.|..++.. ..++.+...+..+.. ..-..+++.+.. .|..++
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred CcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 233444567777788888766532 221233333333332 334456666666 554443
No 391
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=34.33 E-value=89 Score=19.81 Aligned_cols=51 Identities=16% Similarity=0.037 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcH
Q 039637 101 ELCSSLIFHLGKMRAHSEALSVYNMLRYSKRSMCKALHEKILHILISGKLL 151 (159)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (159)
..|..-|..|...+-.+.+..+.+.+-......+......+...+.+.=++
T Consensus 160 ~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~F~~a~~l 210 (221)
T 3ibx_A 160 AFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSKQEIEKLKEIFITTSEY 210 (221)
T ss_dssp TTTHHHHHHTTSHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 467777887775432222222222222222233455556666666554443
No 392
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.18 E-value=44 Score=16.21 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=18.1
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccCC--HHHHHHHHHHHH
Q 039637 87 TMVDMHRKGHQPEEELCSSLIFHLGKMRA--HSEALSVYNMLR 127 (159)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~ 127 (159)
.++++.+.|+.+. ....+..+.|. ++.|..++.+|.
T Consensus 12 mlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 12 MLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 3455555555432 22333444444 666666666664
No 393
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=34.08 E-value=65 Score=21.52 Aligned_cols=53 Identities=8% Similarity=0.040 Sum_probs=29.9
Q ss_pred HHHHccChHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 039637 73 KYFCKEKMYMLAYRTMVDMHRK-GHQPEEELCSSLIFHLGKMRAHSEALSVYNM 125 (159)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (159)
..|....++.....++..|... ...|++.....++++|.+.-+-..|...++.
T Consensus 181 YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 181 YICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3444444555555555555543 2345666666666666666666666655553
No 394
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=33.88 E-value=80 Score=19.11 Aligned_cols=80 Identities=14% Similarity=0.018 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 039637 28 YDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLI 107 (159)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 107 (159)
++..+-...+.++.+.++.+..- .+..+.. .++...-...+.+..+.++.+ +...+..+.. .++..+-...+
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~-~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 128 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVE-PLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAA 128 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHH-HHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHH-HHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34444445555555555433222 2222222 244444444455555544432 2222222322 23444444455
Q ss_pred HHHHccCC
Q 039637 108 FHLGKMRA 115 (159)
Q Consensus 108 ~~~~~~g~ 115 (159)
.++.+.+.
T Consensus 129 ~aL~~~~~ 136 (201)
T 3ltj_A 129 FALGEIGD 136 (201)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhCC
Confidence 55555554
No 395
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.43 E-value=94 Score=19.82 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=38.0
Q ss_pred HhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh-----HHHHHHHHHHHHHcCC
Q 039637 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM-----YMLAYRTMVDMHRKGH 96 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~ 96 (159)
.|..|.+.|+-.+.+|.+.| .|....-..++-+..-.|. ...|...++....-|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999 6655555555566655554 3345556666666675
No 396
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=33.21 E-value=32 Score=22.59 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=31.1
Q ss_pred HHHHHHHhHhcCCCCChhh---------HHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 039637 49 VMHVMRKLDELAISPDYNT---------FHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCSSLIFHL 110 (159)
Q Consensus 49 a~~~~~~m~~~~~~~~~~~---------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 110 (159)
...-++...+.|+.|.... ...+..+ ...++.+.+.+.+++....|..|.......++.+.
T Consensus 12 ~~~~~~~~~~~G~~i~~~~~~l~p~~~~~~~l~~a-l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l 81 (258)
T 2i2x_B 12 VLTRYNVALEKALTPEEAAEELYPKDELIYPIAKA-IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGM 81 (258)
T ss_dssp HCCCHHHHHSCSSCHHHHHHHHSCCCTTSHHHHHH-HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCCcHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344556666777765432 2233332 23356666666666666665555443334444443
No 397
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=32.51 E-value=11 Score=22.74 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHhHhcCCC-CChhhHHHHHHHHH---ccChHHHHHHHHHHHHHcCC
Q 039637 44 GDMESVMHVMRKLDELAIS-PDYNTFHILIKYFC---KEKMYMLAYRTMVDMHRKGH 96 (159)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~g~ 96 (159)
..+.+|.+++..|++.-+. -.+..||..+..+- ..++. .++|+.+.+.++
T Consensus 72 ~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~l 125 (152)
T 1rw2_A 72 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGI 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCc
Confidence 3678888888888876443 24577887776653 23333 455555665554
No 398
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=32.38 E-value=65 Score=17.62 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 039637 11 FEETKQLAGDFEAKYDKY 28 (159)
Q Consensus 11 ~~~A~~~~~~~~~~~~~~ 28 (159)
+++|+.+..-|.-+...|
T Consensus 13 IdKALDFI~~M~tSas~P 30 (115)
T 2es9_A 13 IEKALDFIGGMNTSASVP 30 (115)
T ss_dssp HHHHHHHHHTSCTTCSSC
T ss_pred HHHHHHHhcccccCCCCC
Confidence 567777777766444333
No 399
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=32.27 E-value=61 Score=17.29 Aligned_cols=34 Identities=12% Similarity=-0.085 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH 116 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 116 (159)
...++|.++++.+.++| ...|..++.++.+.+..
T Consensus 50 t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHH
Confidence 44455555555554332 23444555555444443
No 400
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=30.84 E-value=78 Score=18.05 Aligned_cols=109 Identities=11% Similarity=-0.006 Sum_probs=52.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh---hhHHHHHHHHHccCh
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY---NTFHILIKYFCKEKM 80 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~ 80 (159)
..++.|+.+.+..+++.-. .+..+..-++.+. ..+..|+.+-+ +.+.+.|..++. .-.+.+..+ +..|+
T Consensus 8 ~A~~~g~~~~v~~Ll~~g~--~~~~~~~g~t~L~-~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~ 79 (153)
T 1awc_B 8 EAARAGQDDEVRILMANGA--PFTTDWLGTSPLH-LAAQYGHFSTT----EVLLRAGVSRDARTKVDRTPLHMA-ASEGH 79 (153)
T ss_dssp HHHHHTCHHHHHHHHHHTC--CCCCCTTCCCHHH-HHHHHTCHHHH----HHHHTTTCCTTCCCTTCCCHHHHH-HHHTC
T ss_pred HHHHcCCHHHHHHHHHcCC--CCCcCCCCCCHHH-HHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHH-HHcCh
Confidence 4566788777766654321 1122222333333 33555665544 444455655543 223344433 34565
Q ss_pred HHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHccCCHHHHHHHHH
Q 039637 81 YMLAYRTMVDMHRKGHQPEEEL--CSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 124 (159)
.+ +.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 80 ~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 121 (153)
T 1awc_B 80 AN----IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121 (153)
T ss_dssp HH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 54 4455556665544321 1233444456677765554443
No 401
>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A
Probab=30.68 E-value=1.3e+02 Score=20.45 Aligned_cols=19 Identities=16% Similarity=-0.043 Sum_probs=10.5
Q ss_pred cHHHHHHHHHHHHccCCHH
Q 039637 99 EEELCSSLIFHLGKMRAHS 117 (159)
Q Consensus 99 ~~~~~~~li~~~~~~g~~~ 117 (159)
-..+|..++.++.+.|+..
T Consensus 245 ~~~~~d~l~~~~~~~gd~~ 263 (290)
T 1e5r_A 245 PSETYDWLIEISKQAGDEK 263 (290)
T ss_dssp TTHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHhcCChH
Confidence 3445555555555555544
No 402
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=30.65 E-value=71 Score=17.55 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhH
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLD 57 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 57 (159)
.+.-..+.+.+.|++++|++...+..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 45666778888899998877765543
No 403
>4gt9_A TS, tsase, thymidylate synthase THYX; flavin-dependent thymidylate synthase, TM0449, FAD, DUMP, 5, methylenetetrahydrofolate, transferase; HET: FAD UMP MEF; 1.39A {Thermotoga maritima} PDB: 1kq4_A 1o25_A* 1o24_A* 1o27_A* 1o28_A* 1o29_A* 1o2a_A* 1o2b_A* 1o26_A* 4gta_A* 4gtb_A* 4gtl_A* 3g4a_A* 3g4c_A* 4gtd_A* 4gtc_A* 4gte_A* 4gtf_A* 3n0b_A* 3n0c_A*
Probab=30.50 E-value=62 Score=20.99 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=11.0
Q ss_pred HHHHHHHHHhHhcCCCC
Q 039637 47 ESVMHVMRKLDELAISP 63 (159)
Q Consensus 47 ~~a~~~~~~m~~~~~~~ 63 (159)
+.+.+.|.+|.+.|+.+
T Consensus 139 ~~a~~~Y~~ll~~Gva~ 155 (232)
T 4gt9_A 139 DKAYRTYLELIESGVPR 155 (232)
T ss_dssp HHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHcCCcH
Confidence 45667777777776543
No 404
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.30 E-value=66 Score=17.04 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=17.9
Q ss_pred CCCCChhhHHHHHHHHHccChHHHHHHHHHHH
Q 039637 60 AISPDYNTFHILIKYFCKEKMYMLAYRTMVDM 91 (159)
Q Consensus 60 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (159)
++.|++.||+-+....-+..-..++..+..++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35677777776666655544444444444443
No 405
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=30.01 E-value=30 Score=25.40 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN 66 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 66 (159)
.+.++|++..++.++.+-.. ..|-.-.|.++|.++.+.|+.||..
T Consensus 212 ~~ldeal~~~~~a~~~~~~~-------------SIg~~GNaadv~~~l~~~~i~~Dlv 256 (551)
T 1x87_A 212 DSLDAALEMAKQAKEEKKAL-------------SIGLVGNAAEVLPRLVETGFVPDVL 256 (551)
T ss_dssp SCHHHHHHHHHHHHHTTCCE-------------EEEEESCHHHHHHHHHHTTCCCSEE
T ss_pred CCHHHHHHHHHHHHHcCCce-------------EEEEeccHHHHHHHHHHCCCCCCCC
Confidence 45566666665555544331 2223334777888888888887643
No 406
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.86 E-value=1.1e+02 Score=19.47 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=35.1
Q ss_pred HhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh-----HHHHHHHHHHHHHcCC
Q 039637 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM-----YMLAYRTMVDMHRKGH 96 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~ 96 (159)
.|..|.+.|+-.+.+|++.|-.|....-..++-+..-.|. +..|...++....-|.
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 4567888888888888888876655555555555544443 3344455555555554
No 407
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*
Probab=29.80 E-value=2e+02 Score=23.10 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh
Q 039637 30 VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY 65 (159)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 65 (159)
-....-.+..++|.++.++|.+++..+...++-||.
T Consensus 722 Gws~aw~~~~~ARL~dg~~A~~~l~~ll~~~~~~Nl 757 (899)
T 2eab_A 722 GWAIGQRINSWARTGDGNTTYQLVELQLKNAMYANL 757 (899)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSBCTTC
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCccc
Confidence 334445556666777777777777776666655543
No 408
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=29.11 E-value=1.2e+02 Score=19.75 Aligned_cols=22 Identities=0% Similarity=-0.304 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHhc-CChHHH
Q 039637 28 YDVVLLNSMLCAYCRT-GDMESV 49 (159)
Q Consensus 28 ~~~~~~~~ll~~~~~~-~~~~~a 49 (159)
|....|+..|...+.. |++.++
T Consensus 127 p~~~aYt~~ll~~a~~~g~~~~~ 149 (248)
T 3no6_A 127 PSGDHYIKHMYFNAFARENAAFT 149 (248)
T ss_dssp HHHHHHHHHHHHHHHHCSSTHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHH
Confidence 3445566666655555 665553
No 409
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=28.96 E-value=56 Score=20.44 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=19.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.+|.++.+.|++++|..+++.+..
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578899999999999988876653
No 410
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=28.92 E-value=31 Score=25.37 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChh
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYN 66 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 66 (159)
.+.++|++..++.++.+-.. ..|-.-.|.++|.++.+.|+.||..
T Consensus 213 ~~ldeal~~~~~a~~~~~~~-------------SIg~~GNaadv~~~l~~~~i~~Dlv 257 (552)
T 2fkn_A 213 ASIEEALAWAEEAKLAGKPL-------------SIALLGNAAEVHHTLLNRGVKIDIV 257 (552)
T ss_dssp SCHHHHHHHHHHHHHTTCCE-------------EEEEESCHHHHHHHHHTTTCCCSEE
T ss_pred CCHHHHHHHHHHHHHcCCce-------------EEEEeccHHHHHHHHHHCCCCCCCC
Confidence 45566666665555544331 2223334777888888888887643
No 411
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=28.79 E-value=32 Score=25.30 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhh
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNT 67 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 67 (159)
.+.++|++..++.++.+-..+ .|-.-.|.++|.++.+.|+.||..|
T Consensus 217 ~~ldeal~~~~~a~~~~~~~S-------------Ig~~GNaadv~~~l~~~~i~~Dlvt 262 (557)
T 1uwk_A 217 TDLDDALVRIAKYTAEGKAIS-------------IALHGNAAEILPELVKRGVRPDMVT 262 (557)
T ss_dssp SSHHHHHHHHHHHHHTTCCCE-------------EEEESCHHHHHHHHHHHTCCCSEEC
T ss_pred CCHHHHHHHHHHHHHcCCceE-------------EEEeccHHHHHHHHHHCCCCCCCCC
Confidence 455666666665555543322 2233447788888888888886433
No 412
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=28.31 E-value=62 Score=22.82 Aligned_cols=81 Identities=7% Similarity=-0.079 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhC---CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHH
Q 039637 11 FEETKQLAGDFEAK---YDKYD---VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLA 84 (159)
Q Consensus 11 ~~~A~~~~~~~~~~---~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (159)
-++|.-+|..+... .+.++ ....-..+..+.+.-++ ++++.+.+.|+.|...++.-++..+.+.=.++.+
T Consensus 175 E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP----~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~v 250 (396)
T 1fkm_A 175 EADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDA----DLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTV 250 (396)
T ss_dssp HHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHH
Confidence 34566666666543 22222 22222333444444333 4666777778888888888888888877778888
Q ss_pred HHHHHHHHHcC
Q 039637 85 YRTMVDMHRKG 95 (159)
Q Consensus 85 ~~~~~~m~~~g 95 (159)
.++|+.+...|
T Consensus 251 lrlWD~~l~eg 261 (396)
T 1fkm_A 251 IRMWDTYLSET 261 (396)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHCC
Confidence 89998888765
No 413
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.25 E-value=2.3e+02 Score=22.64 Aligned_cols=93 Identities=6% Similarity=-0.119 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCh---HHHHHHHHHhHhcC----CCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHHH
Q 039637 32 LLNSMLCAYCRTGDM---ESVMHVMRKLDELA----ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELCS 104 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 104 (159)
.-..++...|+.|.. +.|.+.|+.....+ +.||.. ..+...-.+.|..++-..+++..... .+..--.
T Consensus 688 lr~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~ 762 (909)
T 4fke_A 688 SEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEAD 762 (909)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHH
Confidence 345667778888764 46788887766532 445533 22333334456655555556666553 2444556
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC
Q 039637 105 SLIFHLGKMRAHSEALSVYNMLRYS 129 (159)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~~ 129 (159)
.++.+++...+.+...++++.....
T Consensus 763 ~ll~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 763 KLRSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhCC
Confidence 7888888888888888888877653
No 414
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.89 E-value=1.1e+02 Score=18.70 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHHhcCC
Q 039637 29 DVVLLNSMLCAYCRTGD 45 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~~ 45 (159)
|..+-...+.++.+.++
T Consensus 63 ~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGD 79 (211)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 44444455555555554
No 415
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=27.53 E-value=1e+02 Score=18.39 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHhHhc----CCCCChhhHHHHHHHHHccChHH
Q 039637 9 GCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG--DMESVMHVMRKLDEL----AISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
++.+-..+++..+.+. .......|-.+. ..+ |++.+..+-..++.. |. ........-+..+++.++.+
T Consensus 37 ~~~~~~~ell~~Fl~d----~~~~l~~L~~al-~~~~~D~~~l~~~aH~LKGss~~lGa-~~l~~~c~~lE~~~~~~~~~ 110 (153)
T 3us6_A 37 NNPEFVFEVVSLFFDD----SERILKDLSFAV-DQQSIDFKKVDAHVHQFKGSSASIGA-QRVKNSCVAFRNFCEEQNID 110 (153)
T ss_dssp TBTTHHHHHHHHHHHH----HHHHHHHHHHHH-TSSSCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHHH----HHHHHHHHHHHH-HcCCccHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHcCCHH
Confidence 4555566666666541 344555555554 444 788887777777754 33 23344445666778888888
Q ss_pred HHHHHHHHHHHc
Q 039637 83 LAYRTMVDMHRK 94 (159)
Q Consensus 83 ~a~~~~~~m~~~ 94 (159)
.+...+.++...
T Consensus 111 ~~~~~l~~l~~e 122 (153)
T 3us6_A 111 ACRRCLQQVKQE 122 (153)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887753
No 416
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=26.89 E-value=1.2e+02 Score=19.12 Aligned_cols=109 Identities=10% Similarity=-0.068 Sum_probs=55.3
Q ss_pred hHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh---hhHHHHHHHHH
Q 039637 3 SAFCRSGCFEETKQLAGDFEAKYDKYDVV---LLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY---NTFHILIKYFC 76 (159)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~ 76 (159)
...++.|+.+....+ .+.|..++.. .-.+.+...++.|+.+-+ +.+.+.|..|+. ...+.+ ...+
T Consensus 10 ~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~A~ 80 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPF-LLAA 80 (285)
T ss_dssp HHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHH-HHHH
T ss_pred HHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHH-HHHH
Confidence 445677887655544 4555544322 112344445666776544 444455665543 233333 3444
Q ss_pred ccChHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHccCCHHHHHHHHH
Q 039637 77 KEKMYMLAYRTMVDMHRKGHQPEEEL--CSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 124 (159)
..|+. ++++.+.+.|..++... -...+...++.|+.+-...+++
T Consensus 81 ~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 126 (285)
T 1wdy_A 81 IAGSV----KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126 (285)
T ss_dssp HHTCH----HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCH----HHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHH
Confidence 55665 44555666666554321 1234445566777765555544
No 417
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.62 E-value=1.5e+02 Score=19.96 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=4.7
Q ss_pred HhcCCHHHHHH
Q 039637 6 CRSGCFEETKQ 16 (159)
Q Consensus 6 ~~~~~~~~A~~ 16 (159)
+..|+.+-+..
T Consensus 28 a~~g~~~~v~~ 38 (364)
T 3ljn_A 28 ARKGQTDEVRR 38 (364)
T ss_dssp HHHTCHHHHHH
T ss_pred HHcCCHHHHHH
Confidence 44455444333
No 418
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.54 E-value=77 Score=16.66 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 33 LNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
...+.+-|+..|+++.|...|+...+
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34566778888999999988887765
No 419
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=26.42 E-value=99 Score=17.85 Aligned_cols=112 Identities=8% Similarity=-0.009 Sum_probs=52.6
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh---hhHHHHHHHHHcc
Q 039637 2 ISAFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY---NTFHILIKYFCKE 78 (159)
Q Consensus 2 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~ 78 (159)
+...++.|+.+....+++.-..-. .+|..-++.+. ..++.|+.+-+ +.+.+.|..++. ...+. +...+..
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~-~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~ 79 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLM-WAAAHGQIAVV----EFLLQNGADPQLLGKGRESA-LSLACSK 79 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHH-HHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCH-HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHH-HHHHCCCHHHH----HHHHHcCCCCCCcCCCCCcH-HHHHHHc
Confidence 345677888777776654421100 12333333443 33456665444 444455555543 22233 3344455
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHccCCHHHHHHHHH
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEEL--CSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 124 (159)
|+.+- .+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 80 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 123 (167)
T 3v31_A 80 GYTDI----VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123 (167)
T ss_dssp TCHHH----HHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHH----HHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 66543 344444454443211 1123344455677775555554
No 420
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=25.77 E-value=82 Score=16.65 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=8.8
Q ss_pred HHHHHHHHcCCCCcHHHHH
Q 039637 86 RTMVDMHRKGHQPEEELCS 104 (159)
Q Consensus 86 ~~~~~m~~~g~~~~~~~~~ 104 (159)
+.|-.|...|+..+...-.
T Consensus 51 qHFPnm~~~Gi~~~S~LA~ 69 (85)
T 3hgl_A 51 QHFPNMPMHGISRDSELAI 69 (85)
T ss_dssp HHCTTHHHHCCCTTCHHHH
T ss_pred HHChhhhhccCCCCCHHHH
Confidence 3344455555555444333
No 421
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=25.73 E-value=69 Score=15.78 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=1.7
Q ss_pred HHccChHHHH
Q 039637 75 FCKEKMYMLA 84 (159)
Q Consensus 75 ~~~~~~~~~a 84 (159)
+..+|++++|
T Consensus 50 LmNrG~Yq~A 59 (61)
T 3ph0_C 50 LMNQGDYQRA 59 (61)
T ss_dssp HHHC------
T ss_pred HHccchHhHh
Confidence 3444555444
No 422
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=25.40 E-value=98 Score=17.44 Aligned_cols=76 Identities=9% Similarity=0.040 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHh-cCCCCChhhHHHHHHHHHccChHHHHHHHH
Q 039637 10 CFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDE-LAISPDYNTFHILIKYFCKEKMYMLAYRTM 88 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (159)
.+.+|+.-+++..+. ++|......++..+-.. ++.+.++.+...+ .|+ .+.++.-.+....+.|-.+.. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 456677777666544 34666666666665554 4445555554443 455 356677677777776665444 334
Q ss_pred HHHH
Q 039637 89 VDMH 92 (159)
Q Consensus 89 ~~m~ 92 (159)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 423
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=25.31 E-value=2e+02 Score=20.92 Aligned_cols=58 Identities=10% Similarity=-0.027 Sum_probs=39.4
Q ss_pred hHHHHHHHHHccChHHHHHHHHHHHHHcCCCCc--------HHHHH-HHHHHHHccCCHHHHHHHHH
Q 039637 67 TFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPE--------EELCS-SLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--------~~~~~-~li~~~~~~g~~~~a~~~~~ 124 (159)
..+.+++.|.+.++...+..++..+...+..|+ ..+|. -+...+...+++.+|..-+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~ 244 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFN 244 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHH
Confidence 357888999999999999999999987665322 23333 23444555666666665544
No 424
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=25.29 E-value=1.7e+02 Score=20.26 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=40.8
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHhH----hcC--CCCChhhHHHHHHHHHccChHHHHHHHH
Q 039637 20 DFEAKYDKYDVVLLNSMLCAYCRTGDME-SVMHVMRKLD----ELA--ISPDYNTFHILIKYFCKEKMYMLAYRTM 88 (159)
Q Consensus 20 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~----~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (159)
.+.+.+.++|......++..+.....-+ +-..+.+++. +.| -.-++.....+-..|.+.+++.+|+..|
T Consensus 84 vy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 84 TFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3455577777777777777777655321 1222333333 223 2234566667777788888888776655
No 425
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=25.09 E-value=71 Score=21.28 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHh
Q 039637 32 LLNSMLCAYCRTGDMESVMHVMRKLDE 58 (159)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 58 (159)
.-|.+++-|...|+.+.|.++++++..
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 458899999999999999999997543
No 426
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=24.79 E-value=16 Score=22.56 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=9.2
Q ss_pred HHHHHHHHHhHhcCCCC
Q 039637 47 ESVMHVMRKLDELAISP 63 (159)
Q Consensus 47 ~~a~~~~~~m~~~~~~~ 63 (159)
+-|..+++.+...|-.|
T Consensus 66 ~HA~~l~e~i~~lGG~p 82 (181)
T 3bvf_A 66 EHAKKLIIFLNENNVPV 82 (181)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 44566666665555444
No 427
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=24.78 E-value=1.1e+02 Score=17.79 Aligned_cols=106 Identities=11% Similarity=-0.018 Sum_probs=49.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCCh---hhHHHHHHHHHcc
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYD---VVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDY---NTFHILIKYFCKE 78 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~ 78 (159)
.++.|+.+-+..+ .+.|..++ ..-++. +...++.|+.+-+. .+.+.|..++. ...+.|. ..+..
T Consensus 21 A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~-~A~~~ 90 (169)
T 2y1l_E 21 AARAGRDDEVRIL----MANGADVNAEDASGWTP-LHLAAFNGHLEIVE----VLLKNGADVNAVDHAGMTPLR-LAALF 90 (169)
T ss_dssp HHHHTCHHHHHHH----HHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHH-HHHHT
T ss_pred HHHcCCHHHHHHH----HHCCCCCCCCCCCCCCH-HHHHHHcCCHHHHH----HHHHcCCCCCccCCCCCCHHH-HHHHc
Confidence 4556776665544 34444332 222333 33445666655443 44445554442 2333333 34445
Q ss_pred ChHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHccCCHHHHHHHHH
Q 039637 79 KMYMLAYRTMVDMHRKGHQPEEEL--CSSLIFHLGKMRAHSEALSVYN 124 (159)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 124 (159)
|+.+ +.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 91 ~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 134 (169)
T 2y1l_E 91 GHLE----IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134 (169)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 6554 4445555554443221 1233444556677765554443
No 428
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.76 E-value=1.2e+02 Score=18.16 Aligned_cols=100 Identities=10% Similarity=-0.048 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHH
Q 039637 10 CFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMV 89 (159)
Q Consensus 10 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 89 (159)
..+.+.++++.+.+.|..-|..--...+....+.| .....+-.++.+.|+.++. ....+..+.. ...+.|..+..
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~~--i~~al~~~~~-d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISREA--TEKAMREADI-DWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHHH--HHHHHHHHCC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHHH--HHHHHHHcCH-hHHHHHHHHHH
Confidence 46677888899999998745555557777776655 3456677788899986543 3333333322 33445555555
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccC
Q 039637 90 DMHRKGHQPEEELCSSLIFHLGKMR 114 (159)
Q Consensus 90 ~m~~~g~~~~~~~~~~li~~~~~~g 114 (159)
.-.....+++.....-++..+.+.|
T Consensus 120 kk~~~~~~~~~~~~~K~~~~L~rrG 144 (159)
T 3c1d_A 120 RKYGEPLPTVFSEKVKIQRFLLYRG 144 (159)
T ss_dssp HHHCSSCCCSHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 3332212233444555666555555
No 429
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=24.60 E-value=1.9e+02 Score=20.42 Aligned_cols=93 Identities=11% Similarity=-0.009 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHhHhcC----CCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHHH
Q 039637 31 VLLNSMLCAYCRTGD---MESVMHVMRKLDELA----ISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEELC 103 (159)
Q Consensus 31 ~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 103 (159)
.....++...|..|+ .++|.+.|+.....+ +.||.... +...-.+ ..++-..+++..... .++.--
T Consensus 198 ~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek 270 (419)
T 3rjo_A 198 MLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA--VFAVGAQ--STEGWDFLYSKYQFS---LSSTEK 270 (419)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH--HHHHHTT--SHHHHHHHHHHHHHC---CCHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee--EEeeeeC--CHHHHHHHHHHHhcC---CCHHHH
Confidence 345677778888886 456788888776542 44543321 1111122 222223444444443 345556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC
Q 039637 104 SSLIFHLGKMRAHSEALSVYNMLRYSK 130 (159)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~~~~~ 130 (159)
..++.+++...+.+...++++......
T Consensus 271 ~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 271 SQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 778888888888888888888776544
No 430
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=24.36 E-value=1.1e+02 Score=17.70 Aligned_cols=12 Identities=17% Similarity=-0.175 Sum_probs=5.1
Q ss_pred HccChHHHHHHH
Q 039637 76 CKEKMYMLAYRT 87 (159)
Q Consensus 76 ~~~~~~~~a~~~ 87 (159)
...++++++..+
T Consensus 71 Veek~Lek~~~v 82 (124)
T 3vu7_H 71 IEEKDLEKLDLV 82 (124)
T ss_dssp HHTTCHHHHHHH
T ss_pred hhcccHHHHHHH
Confidence 334444444433
No 431
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=24.20 E-value=2.4e+02 Score=21.46 Aligned_cols=59 Identities=5% Similarity=-0.029 Sum_probs=32.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----ChHH----HHHHHHHhHhcCCCC
Q 039637 5 FCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTG-----DMES----VMHVMRKLDELAISP 63 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~----a~~~~~~m~~~~~~~ 63 (159)
|...=.+++..+.+++++.+..+.|...|.+++..+...- -+.+ .-.+|..|.+.++.+
T Consensus 459 Y~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~ 526 (603)
T 4b8b_A 459 YSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLR 526 (603)
T ss_dssp HTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccC
Confidence 4444456666666666666554446667777776655421 1222 235566666666543
No 432
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=23.67 E-value=1.1e+02 Score=17.49 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcC------ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHHHHHHHHHHHHHcC
Q 039637 29 DVVLLNSMLCAYCRTG------DMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYMLAYRTMVDMHRKG 95 (159)
Q Consensus 29 ~~~~~~~ll~~~~~~~------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (159)
....|-.++.+..|.. |+......++-..+.-+-.+..-|+.| ..+.-.|-.....++...+.+..
T Consensus 21 s~hhWLNfLQAAyRLqPgPS~fDFhqLr~fLklAl~TPvWlnPI~YSlL-A~LiPkgyPGRv~eIi~ILi~~~ 92 (137)
T 1jvr_A 21 STHHWLNFLQAAYRLQPGPSDFDFQQLRRFLKLALKTPIWLNPIDYSLL-ASLIPKGYPGRVVEIINILVKNQ 92 (137)
T ss_dssp THHHHHHHHHHHHHSSCCCSTTTHHHHHHHHHHHHTCTTSTTTTCTTTH-HHHSCSSCSTTHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCcccccchhHHHH-HhhccCCCCchHHHHHHHHHHhc
Confidence 5677888888777643 677777777777777666677777744 44444454555556666666544
No 433
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=23.60 E-value=59 Score=20.72 Aligned_cols=42 Identities=12% Similarity=-0.040 Sum_probs=29.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 039637 4 AFCRSGCFEETKQLAGDFEAKYDKYDVVLLNSMLCAYCRTGD 45 (159)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 45 (159)
...-.++-+.+.+++++..+.|..|....-+.++.+..+.|+
T Consensus 11 ~al~~~d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m~~VG~ 52 (215)
T 3ezx_A 11 DAIVNQNVAGTPELCKEALAAGVPALDIITKGLSVGMKIVGD 52 (215)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 345568888899999998888877666555667766655543
No 434
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=23.54 E-value=46 Score=20.27 Aligned_cols=17 Identities=12% Similarity=-0.031 Sum_probs=8.9
Q ss_pred HHHHHHHHHhHhcCCCC
Q 039637 47 ESVMHVMRKLDELAISP 63 (159)
Q Consensus 47 ~~a~~~~~~m~~~~~~~ 63 (159)
+-|..+++.+...|-.|
T Consensus 66 ~HAd~l~eri~~lGg~~ 82 (176)
T 1vlg_A 66 THAMKFYEYIYERGGRV 82 (176)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCCe
Confidence 34555555555554444
No 435
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=23.24 E-value=2.5e+02 Score=21.36 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh-----HHH----HHHHHHHHHHcCCCC
Q 039637 44 GDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM-----YML----AYRTMVDMHRKGHQP 98 (159)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~----a~~~~~~m~~~g~~~ 98 (159)
-..++..+.+++++...-.-+...|.+|+......-+ +.+ .-.+|..|.+.++-+
T Consensus 463 isI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~ 526 (603)
T 4b8b_A 463 LAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLR 526 (603)
T ss_dssp SCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccC
Confidence 3467788888888876544566788877777544311 222 335677777766543
No 436
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=23.10 E-value=1.5e+02 Score=18.85 Aligned_cols=11 Identities=0% Similarity=-0.179 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH
Q 039637 101 ELCSSLIFHLG 111 (159)
Q Consensus 101 ~~~~~li~~~~ 111 (159)
..|..-|..|.
T Consensus 158 ~~y~~WI~~y~ 168 (229)
T 4fn6_A 158 KDTAKWFDFYS 168 (229)
T ss_dssp STHHHHHHHHT
T ss_pred ChHHHHHHHHh
Confidence 35566666666
No 437
>4ewi_A Nacht, LRR and PYD domains-containing protein 4; NLR proteins, death domain, pyrin domain, NLRP4, ASC, innate system, inflammasome, apoptosis; 2.28A {Homo sapiens}
Probab=23.00 E-value=63 Score=18.35 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 039637 100 EELCSSLIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~~~ 127 (159)
..++...+..+.+.+..+.+.++-+++.
T Consensus 68 ~~A~~vtl~if~~mn~~dL~e~~~~e~~ 95 (113)
T 4ewi_A 68 QQAWNITLRIFQKMDRKDLCMKVMRERT 95 (113)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3455555555555555555555555544
No 438
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=22.89 E-value=58 Score=13.90 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=14.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 039637 106 LIFHLGKMRAHSEALSVYNMLR 127 (159)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~~ 127 (159)
-+.-|-..|..++|..+-+.++
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 3555666677777776665555
No 439
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=22.68 E-value=1e+02 Score=16.80 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 039637 11 FEETKQLAGDFEAK--YDKY-DVVLLNSMLCAYCRTGDMESVMHVMRKL 56 (159)
Q Consensus 11 ~~~A~~~~~~~~~~--~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m 56 (159)
.++...++.....+ ||.+ |+..+...+.-+.+.++.+++..+++.+
T Consensus 11 l~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l 59 (97)
T 4fjo_A 11 FSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYM 59 (97)
T ss_dssp HHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 44444454444433 3322 4455555566666677777776665554
No 440
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=22.63 E-value=1.1e+02 Score=16.99 Aligned_cols=80 Identities=10% Similarity=-0.038 Sum_probs=33.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhcCCCCC---hhhHHHHHHHHHccChHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHH
Q 039637 36 MLCAYCRTGDMESVMHVMRKLDELAISPD---YNTFHILIKYFCKEKMYMLAYRTMVDMHRKGHQPEEEL--CSSLIFHL 110 (159)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~ 110 (159)
.+...++.|+.+.+..+++ .|..++ ..-.+.|..++ ..|+.+ +.+.+.+.|..++... -.+.+...
T Consensus 17 ~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~-~~~~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A 87 (136)
T 2jab_A 17 KLLEAARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLAT-AHGHLE----IVEVLLKNGADVNAVDAIGFTPLHLA 87 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH-HHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHH-HcCCHH----HHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 3334456666655544443 343333 22333333333 345543 3344444454433211 11233334
Q ss_pred HccCCHHHHHHHHH
Q 039637 111 GKMRAHSEALSVYN 124 (159)
Q Consensus 111 ~~~g~~~~a~~~~~ 124 (159)
+..|+.+-+..+++
T Consensus 88 ~~~~~~~~v~~Ll~ 101 (136)
T 2jab_A 88 AFIGHLEIAEVLLK 101 (136)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 45566654444443
No 441
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=22.41 E-value=68 Score=17.14 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 039637 101 ELCSSLIFHLGKMRAHSEALSVYNMLRY 128 (159)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (159)
.+-+.++..|....-++.+..+|++|..
T Consensus 51 dla~lLv~~y~~~~A~~vt~~if~~mn~ 78 (89)
T 2hm2_Q 51 DLTDKLVASYYEDYAAELVVAVLRDMRM 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHcCH
Confidence 3456677777777777888888877653
No 442
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=22.30 E-value=1.8e+02 Score=19.33 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=23.3
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCC
Q 039637 87 TMVDMHRKGHQPEEELCSSLIFHLGKMR-AHSEALSVYNMLRYSK 130 (159)
Q Consensus 87 ~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~ 130 (159)
+++.+.+.|+ +...++.-++..+.+.- .++.+.++|+.+...|
T Consensus 190 L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g 233 (292)
T 4hl4_A 190 LHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACH 233 (292)
T ss_dssp HHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcC
Confidence 4455555555 34555555555555543 3666666666666554
No 443
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=22.14 E-value=20 Score=21.77 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=6.8
Q ss_pred HHHHHHHHHhHhcC
Q 039637 47 ESVMHVMRKLDELA 60 (159)
Q Consensus 47 ~~a~~~~~~m~~~~ 60 (159)
+-|..+++.+...|
T Consensus 52 ~HA~~l~~~i~~~g 65 (167)
T 1krq_A 52 DHAKKLITYLNETD 65 (167)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcC
Confidence 33555555555443
No 444
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=21.65 E-value=1.2e+02 Score=19.22 Aligned_cols=40 Identities=3% Similarity=-0.228 Sum_probs=27.2
Q ss_pred HhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh
Q 039637 41 CRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM 80 (159)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 80 (159)
...++-+.+.+++++..+.|..|....-..++-+.-+.|+
T Consensus 13 l~~~d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m~~VG~ 52 (215)
T 3ezx_A 13 IVNQNVAGTPELCKEALAAGVPALDIITKGLSVGMKIVGD 52 (215)
T ss_dssp HHTTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888776655555556666555544
No 445
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=21.57 E-value=1.2e+02 Score=17.10 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=12.8
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 039637 5 FCRSGCFEETKQLAGDFE 22 (159)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~ 22 (159)
..+.|++++|.+.++.-.
T Consensus 32 ~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 32 FAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 356788888888876654
No 446
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=21.36 E-value=3.3e+02 Score=22.14 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=55.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHH-HHH---HHHHHHHhcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccChHH
Q 039637 7 RSGCFEETKQLAGDFEAKYDKYDVV-LLN---SMLCAYCRTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKMYM 82 (159)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 82 (159)
-.|+.+.+..+.+.+... .++. -|. ++..+|+-.|+.....+++..+.+. ...+..-...+--++...|+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCS
T ss_pred hCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHH
Confidence 456666666666666642 2222 222 2334556667766666677766653 1222333333333344455555
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH-HHHHHHHHHHH
Q 039637 83 LAYRTMVDMHRKGHQPEEELCSSLIFHLGKMRAH-SEALSVYNMLR 127 (159)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~ 127 (159)
.+.++++.+.+.+ .|.+.--..+.-+....|.. .++..++..+.
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 5555555554433 23333333333333333332 34555555554
No 447
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.89 E-value=1.8e+02 Score=18.75 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=46.1
Q ss_pred HHHHHHHHHH---hcCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHHccCh-----HHHHHHHHHHHHHcCCC
Q 039637 32 LLNSMLCAYC---RTGDMESVMHVMRKLDELAISPDYNTFHILIKYFCKEKM-----YMLAYRTMVDMHRKGHQ 97 (159)
Q Consensus 32 ~~~~ll~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~~ 97 (159)
.+-.+|+++- |.+|.+.|+-.+.+|.+.|-.|....-..++-+..-.|. +..|...++....-|.+
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3444555554 578999999999999999987766666666666655554 34556666767777753
No 448
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=20.71 E-value=1.5e+02 Score=17.97 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=6.8
Q ss_pred HHHhcCCHHHHHHH
Q 039637 4 AFCRSGCFEETKQL 17 (159)
Q Consensus 4 ~~~~~~~~~~A~~~ 17 (159)
..++.|+.+-+..+
T Consensus 31 ~A~~~g~~~~v~~L 44 (223)
T 2f8y_A 31 LAARYSRSDAAKRL 44 (223)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHH
Confidence 34555665544333
No 449
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=20.48 E-value=1.9e+02 Score=18.98 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHH
Q 039637 27 KYDVVLLNSMLCAYCRTGDMESV 49 (159)
Q Consensus 27 ~~~~~~~~~ll~~~~~~~~~~~a 49 (159)
.|....|+..+...+..|++.++
T Consensus 133 ~pat~aYt~~l~~~a~~g~~~~~ 155 (263)
T 2qcx_A 133 SPTAYSFTSHMYRSVLSGNFAEI 155 (263)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCHHHH
Confidence 34556677777666666666554
Done!