BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039638
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 22/174 (12%)
Query: 62 IFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYG---FDLN 118
+FVR ER+D+ + +I G TPY +G F FD++FP YP +PPL+ + G N
Sbjct: 100 VFVRCDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFN 159
Query: 119 PNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPYY 178
PNL+ DG+V L +L W+ + + ++WNPQ S+ +QVLVS+Q +L A PY+
Sbjct: 160 PNLYNDGKVCLSILNT------WHGRPE----EKWNPQTSSFLQVLVSVQSLILVAEPYF 209
Query: 179 CHKGHPQ--------KSNKEVFRLNCQAMLVMLQPHMQFKQPHMQFKHLVQGHF 224
G+ + +S++E + N + V Q + P FK ++ HF
Sbjct: 210 NEPGYERSRGTPSGTQSSRE-YDGNIRQATVKWAXLEQIRNPSPCFKEVIHKHF 262
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 20/133 (15%)
Query: 44 AERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPV 103
++RI KE LE++ P+S + + +A I+G +PY G+FF I FPT YP
Sbjct: 4 SKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPF 63
Query: 104 TPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQV 163
PP I + + + +PN++ +G + LD+L K QW+P + + +V
Sbjct: 64 KPPKISFTTKIY--HPNINANGNICLDIL-----------------KDQWSPALT-LSKV 103
Query: 164 LVSIQHKVLNANP 176
L+SI + +ANP
Sbjct: 104 LLSICSLLTDANP 116
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RI+KE L K+ P++ + + +A I+G E +PY G+FF +I FP+ YP
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ G + LD+L K QW+P + I +VL
Sbjct: 84 PPKVNFTTKIY--HPNINSQGAICLDIL-----------------KDQWSPALT-ISKVL 123
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 124 LSISSLLTDPNP 135
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RIHKE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 7 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 66
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G +SLD+L + QW+P + I +VL
Sbjct: 67 PPKVAFTTRIY--HPNINSNGSISLDIL-----------------RSQWSPALT-ISKVL 106
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 107 LSICSLLCDPNP 118
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 20/133 (15%)
Query: 44 AERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPV 103
++RIHKE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 2 SKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 104 TPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQV 163
PP + + + + +PN++ +G +SLD+L + QW+P I +V
Sbjct: 62 KPPKVAFTTRIY--HPNINSNGSISLDIL-----------------RSQWSPAL-KISKV 101
Query: 164 LVSIQHKVLNANP 176
L+SI + + NP
Sbjct: 102 LLSICSLLCDPNP 114
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RIHKE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G +SLD+L + QW+P + I +VL
Sbjct: 66 PPKVAFTTRIY--HPNINSNGSISLDIL-----------------RSQWSPALT-ISKVL 105
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 106 LSICSLLCDPNP 117
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 21/139 (15%)
Query: 39 PKSELA-ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFF 97
P+ +A +RIHKE L ++ P+ + + +A I+G +PY G+FF I F
Sbjct: 15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 74
Query: 98 PTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQE 157
PT YP PP + + + + +PN++ +G + LD+L + QW+P
Sbjct: 75 PTDYPFKPPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPAL 115
Query: 158 SNIMQVLVSIQHKVLNANP 176
+ I +VL+SI + + NP
Sbjct: 116 T-ISKVLLSICSLLCDPNP 133
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RI++E L K+ PSS + + +A I+G +PY G+FF I FPT YP
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + I +VL
Sbjct: 64 PPKVNFTTRIY--HPNINSNGSICLDIL-----------------RDQWSPALT-ISKVL 103
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 104 LSISSLLTDPNP 115
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 21/139 (15%)
Query: 39 PKSELA-ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFF 97
P+ +A +RIHKE L ++ P+ + + +A I+G +PY G+FF I F
Sbjct: 15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 74
Query: 98 PTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQE 157
PT YP PP + + + + +PN++ +G + LD+L + QW+P
Sbjct: 75 PTDYPFKPPKVAFTTRIY--HPNINSNGSIXLDIL-----------------RSQWSPAL 115
Query: 158 SNIMQVLVSIQHKVLNANP 176
+ I +VL+SI + + NP
Sbjct: 116 T-ISKVLLSICSLLCDPNP 133
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RIHKE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + I +VL
Sbjct: 66 PPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPALT-ISKVL 105
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 106 LSICSLLCDPNP 117
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RIHKE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 14 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + I +VL
Sbjct: 74 PPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPALT-ISKVL 113
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 114 LSICSLLCDPNP 125
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RIHKE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + I +VL
Sbjct: 66 PPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPALT-ISKVL 105
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 106 LSICSLLCDPNP 117
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RIHKE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + I +VL
Sbjct: 64 PPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPALT-ISKVL 103
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 104 LSICSLLCDPNP 115
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RIHKE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + I +VL
Sbjct: 69 PPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPALT-ISKVL 108
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 109 LSICSLLCDPNP 120
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RIHKE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW P + I +VL
Sbjct: 66 PPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWGPALT-ISKVL 105
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 106 LSICSLLCDPNP 117
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RI+KE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G +SLD+L + QW+P + I +VL
Sbjct: 64 PPKVAFTTRIY--HPNINSNGSISLDIL-----------------RSQWSPALT-ISKVL 103
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 104 LSICSLLCDPNP 115
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RI KE + L+++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + + +VL
Sbjct: 69 PPKVAFTTKIY--HPNINSNGSICLDIL-----------------RSQWSPALT-VSKVL 108
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 109 LSICSLLCDPNP 120
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RIHKE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD L + QW+P + I +VL
Sbjct: 66 PPKVAFTTRIY--HPNINSNGSICLDAL-----------------RSQWSPALT-ISKVL 105
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 106 LSICSLLCDPNP 117
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RIHKE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +P ++ +G +SLD+L + QW+P + I +VL
Sbjct: 64 PPKVAFTTRIY--HPAINSNGSISLDIL-----------------RSQWSPALT-ISKVL 103
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 104 LSICSLLCDPNP 115
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RIHKE L ++ P+ + + +A +G +PY G+FF I FPT YP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + I +VL
Sbjct: 66 PPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPALT-ISKVL 105
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 106 LSICSLLCDPNP 117
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 44 AERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPV 103
A R+ +E +L P I +++D +RA I+G TPY G+F ++ P YP
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 104 TPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQV 163
PP I + + + +PN+ G++ LD+L + +W R S NI V
Sbjct: 66 EPPQIRFLTPIY--HPNIDSAGRICLDVLKLPPKGAW----RPS----------LNIATV 109
Query: 164 LVSIQHKVLNANP 176
L SIQ + NP
Sbjct: 110 LTSIQLLMSEPNP 122
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RI+KE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 14 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + I +VL
Sbjct: 74 PPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPALT-ISKVL 113
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 114 LSICSLLCDPNP 125
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RI+KE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + I +VL
Sbjct: 63 PPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPALT-ISKVL 102
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 103 LSICSLLCDPNP 114
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RI+KE L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 6 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + I +VL
Sbjct: 66 PPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPALT-ISKVL 105
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 106 LSICSLLCDPNP 117
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 20/139 (14%)
Query: 38 NPKSELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFF 97
+P+ +RI+KE L ++ P+ + + +A I+G +PY G+FF I F
Sbjct: 5 SPEFMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 64
Query: 98 PTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQE 157
PT YP PP + + + + +PN++ +G + LD+L + QW+P
Sbjct: 65 PTDYPFKPPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPAL 105
Query: 158 SNIMQVLVSIQHKVLNANP 176
+ I +VL+SI + + NP
Sbjct: 106 T-ISKVLLSICSLLCDPNP 123
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RI KE + L ++ P+ + + +A I+G +PY G+FF I FPT YP
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + + + +PN++ +G + LD+L + QW+P + I +VL
Sbjct: 67 PPKVAFTTRIY--HPNINSNGSICLDIL-----------------RSQWSPALT-ISKVL 106
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 107 LSICSLLCDPNP 118
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 46 RIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTP 105
RI KE ++++ P + + I A I G + +PY GLFF D+ FP YP
Sbjct: 8 RIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKA 67
Query: 106 PLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLV 165
P + + + + +PN++++G + LD+L K QW+P + + +VL+
Sbjct: 68 PRVTFMTKVY--HPNINKNGVICLDIL-----------------KDQWSPALT-LSRVLL 107
Query: 166 SIQHKVLNANP 176
SI + + NP
Sbjct: 108 SISSLLTDPNP 118
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 21/142 (14%)
Query: 36 NINPKSELA-ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFD 94
+ P+ +A +RI KE L+++ P+ + + +A I+G + Y G+FF
Sbjct: 12 GLVPRGSMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLT 71
Query: 95 IFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWN 154
+ FPT YP PP I + + + +PN++ +G + LD+L + QW+
Sbjct: 72 VHFPTDYPFKPPKIAFTTKIY--HPNINSNGSICLDIL-----------------RSQWS 112
Query: 155 PQESNIMQVLVSIQHKVLNANP 176
P + + +VL+SI + + NP
Sbjct: 113 PALT-VSKVLLSICSLLCDPNP 133
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RI KE L+++ P+ + + +A I+G + Y G+FF + FPT YP
Sbjct: 10 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP I + + + +PN++ +G + LD+L + QW+P + + +VL
Sbjct: 70 PPKIAFTTKIY--HPNINSNGSICLDIL-----------------RSQWSPALT-VSKVL 109
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 110 LSICSLLCDPNP 121
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+RI KE L+++ P+ + + +A I+G + Y G+FF + FPT YP
Sbjct: 6 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP I + + + +PN++ +G + LD+L + QW+P + + +VL
Sbjct: 66 PPKIAFTTKIY--HPNINSNGSICLDIL-----------------RSQWSPALT-VSKVL 105
Query: 165 VSIQHKVLNANP 176
+SI + + NP
Sbjct: 106 LSICSLLCDPNP 117
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 24/134 (17%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLM--RAVIIGLEGTPYCHGLFFFDIFFPTTYP 102
+RI KE L+++ P+ RA DL +A I+G + Y G+FF + FPT YP
Sbjct: 10 KRIQKELSDLQRDPPA--HCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 103 VTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQ 162
PP I + + + +PN++ +G + LD+L + QW+P + + +
Sbjct: 68 FKPPKIAFTTKIY--HPNINSNGSIKLDIL-----------------RSQWSPALT-VSK 107
Query: 163 VLVSIQHKVLNANP 176
VL+SI + + NP
Sbjct: 108 VLLSICSLLCDPNP 121
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT 104
+R+ ++++ L+++ P+ I I L AVI G + TP+ G F + F YP
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 105 PPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVL 164
PP + + S F +PN++ DG + LD+L + QW+P ++ +L
Sbjct: 67 PPTVRFVSRMF--HPNIYADGSICLDIL-----------------QNQWSPIY-DVAAIL 106
Query: 165 VSIQHKVLNANP 176
SIQ + + NP
Sbjct: 107 TSIQSLLCDPNP 118
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 20/131 (15%)
Query: 46 RIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTP 105
R+ ++++ L+++ P + S I AVI G EGTP+ G F I F YP P
Sbjct: 8 RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKP 67
Query: 106 PLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLV 165
P + + S F +PN++ DG + LD+L + +W+P ++ +L
Sbjct: 68 PTVRFLSKMF--HPNVYADGSICLDIL-----------------QNRWSPT-YDVSSILT 107
Query: 166 SIQHKVLNANP 176
SIQ + NP
Sbjct: 108 SIQSLLDEPNP 118
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 41 SELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTT 100
S A+RI KE + + P + + I R+ I+G G+ Y G+FF DI F
Sbjct: 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE 106
Query: 101 YPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNI 160
YP PP + + + + N++ G + LD+L K W+P + I
Sbjct: 107 YPFKPPKVTFRTRIYHC--NINSQGVICLDIL-----------------KDNWSPALT-I 146
Query: 161 MQVLVSIQHKVLNANP 176
+VL+SI + + NP
Sbjct: 147 SKVLLSICSLLTDCNP 162
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 41 SELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTT 100
S A+RI KE + + P + + I R+ I+G G+ Y G+FF DI F
Sbjct: 2 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 61
Query: 101 YPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNI 160
YP PP + + + + N++ G + LD+L K W+P + I
Sbjct: 62 YPFKPPKVTFRTRIYHC--NINSQGVICLDIL-----------------KDNWSPALT-I 101
Query: 161 MQVLVSIQHKVLNANP 176
+VL+SI + + NP
Sbjct: 102 SKVLLSICSLLTDCNP 117
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 46 RIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTP 105
R+ ++++ L+++ P+ + + + I A+I G + TP+ G F + F YP P
Sbjct: 8 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 67
Query: 106 PLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLV 165
P + + S F +PN++ DG + LD+L + +W+P ++ +L
Sbjct: 68 PTVKFISKMF--HPNVYADGSICLDIL-----------------QNRWSPT-YDVAAILT 107
Query: 166 SIQHKVLNANP 176
SIQ + NP
Sbjct: 108 SIQSLLDEPNP 118
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 20/136 (14%)
Query: 41 SELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTT 100
+ L +RI KE E L + I + + + I G E +PY G+F +++ P
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 101 YPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNI 160
YP+ P + + + + +PN+ R G++SLD+L N W+P I
Sbjct: 62 YPMEAPKVRFLTKIY--HPNIDRLGRISLDVLKTN-----------------WSPA-LQI 101
Query: 161 MQVLVSIQHKVLNANP 176
VL+SIQ + + NP
Sbjct: 102 RTVLLSIQALLASPNP 117
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 43 LAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYP 102
+ RI KE + L P I E +I G +GTPY G + ++F P YP
Sbjct: 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61
Query: 103 VTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQ 162
+ PP + + + + +PN+ + G++ LD+L K +W+P I
Sbjct: 62 MEPPKVRFLTKIY--HPNIDKLGRICLDIL-----------------KDKWSPA-LQIRT 101
Query: 163 VLVSIQHKVLNANP 176
VL+SIQ + + P
Sbjct: 102 VLLSIQALLSSPEP 115
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 46 RIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTP 105
R+ ++++ L+++ P+ + + + I A+I G + TP+ G F + F YP P
Sbjct: 11 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 70
Query: 106 PLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLV 165
P + + S F +PN++ DG + LD+L + +W+P ++ +L
Sbjct: 71 PTVKFISKMF--HPNVYADGSICLDIL-----------------QNRWSPT-YDVAAILT 110
Query: 166 SIQHKVLNANP 176
SIQ + NP
Sbjct: 111 SIQSLLDEPNP 121
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 43 LAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYP 102
+ RI KE + L P I E +I G +GTPY G + ++F P YP
Sbjct: 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61
Query: 103 VTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQ 162
+ PP + + + + +PN+ + G++ LD+L K +W+P I
Sbjct: 62 MEPPKVRFLTKIY--HPNIDKLGRICLDIL-----------------KDKWSPA-LQIRT 101
Query: 163 VLVSIQHKVLNANP 176
VL+SIQ + + P
Sbjct: 102 VLLSIQALLSSPEP 115
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 20/130 (15%)
Query: 47 IHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPP 106
++KE L + P I V + E + ++ I G EGTPY GLF + +P +PP
Sbjct: 18 VYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPP 77
Query: 107 LIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVS 166
++ + F +PN+ +G++ +++L K+ W E I VL++
Sbjct: 78 KGYFLTKIF--HPNVGANGEICVNVL-----------------KRDWT-AELGIRHVLLT 117
Query: 167 IQHKVLNANP 176
I+ +++ NP
Sbjct: 118 IKCLLIHPNP 127
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%)
Query: 41 SELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTT 100
+ L +RI KE E L + I + + + I G E +PY G+F +++ P
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 101 YPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNI 160
YP+ P + + + + +PN+ R G++ LD+L N W+P I
Sbjct: 62 YPMEAPKVRFLTKIY--HPNIDRLGRICLDVLKTN-----------------WSPA-LQI 101
Query: 161 MQVLVSIQHKVLNANP 176
VL+SIQ + + NP
Sbjct: 102 RTVLLSIQALLASPNP 117
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%)
Query: 41 SELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTT 100
+ L +RI KE E L + I + + + I G E +PY G+F +++ P
Sbjct: 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 63
Query: 101 YPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNI 160
YP+ P + + + + +PN+ R G++ LD+L N W+P I
Sbjct: 64 YPMEAPKVRFLTKIY--HPNIDRLGRICLDVLKTN-----------------WSPA-LQI 103
Query: 161 MQVLVSIQHKVLNANP 176
VL+SIQ + + NP
Sbjct: 104 RTVLLSIQALLASPNP 119
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%)
Query: 41 SELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTT 100
+ L +RI KE E L + I + + + I G E +PY G+F +++ P
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 101 YPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNI 160
YP+ P + + + + +P + R G++SLD+L N W+P I
Sbjct: 62 YPMEAPKVRFLTKIY--HPAIDRLGRISLDVLKTN-----------------WSPA-LQI 101
Query: 161 MQVLVSIQHKVLNANP 176
VL+SIQ + + NP
Sbjct: 102 RTVLLSIQALLASPNP 117
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 20/131 (15%)
Query: 46 RIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTP 105
R+ ++++ ++++ P + + + + A+IIG TPY G F + F YP P
Sbjct: 8 RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP 67
Query: 106 PLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLV 165
P + + S F +PN++ +G++ LD+L + +W P ++ +L
Sbjct: 68 PHVKFLSEMF--HPNVYANGEICLDIL-----------------QNRWTPT-YDVASILT 107
Query: 166 SIQHKVLNANP 176
SIQ + NP
Sbjct: 108 SIQSLFNDPNP 118
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 12/134 (8%)
Query: 45 ERIHKEWEILEKNLPSSIFVRASAER-IDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPV 103
+R+ KE + L K+ P I +E I + +I G TPY G+F + FP YP+
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 104 TPP-LIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSD-EKQQWNPQESNIM 161
+PP L F S L+PN++ +G+V + +L HS + + +++W+P +S +
Sbjct: 67 SPPKLTFTPSI---LHPNIYPNGEVCISIL-----HSPGDDPNMYELAEERWSPVQS-VE 117
Query: 162 QVLVSIQHKVLNAN 175
++L+S+ + N
Sbjct: 118 KILLSVMSMLSEPN 131
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 23/137 (16%)
Query: 45 ERIHKEWEILEKNLPSSIF---VRASAERIDLMR--AVIIGLEGTPYCHGLFFFDIFFPT 99
+R+ +E + K+ P + V+ + +DL + A I G EGT + G++ + +P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 100 TYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESN 159
YP PP + + + GF +PN++ G + L +L +E Q W P +
Sbjct: 69 EYPSKPPKVKFPA-GF-YHPNVYPSGTICLSIL---------------NEDQDWRPAIT- 110
Query: 160 IMQVLVSIQHKVLNANP 176
+ Q+++ +Q + + NP
Sbjct: 111 LKQIVLGVQDLLDSPNP 127
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 23/137 (16%)
Query: 45 ERIHKEWEILEKNLPSSIF---VRASAERIDLMR--AVIIGLEGTPYCHGLFFFDIFFPT 99
+R+ +E + K+ P + V+ + +DL + A I G EGT + G++ + +P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 100 TYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESN 159
YP PP + + + GF +PN++ G + L +L +E Q W P +
Sbjct: 67 EYPSKPPKVKFPA-GF-YHPNVYPSGTICLSIL---------------NEDQDWRPAIT- 108
Query: 160 IMQVLVSIQHKVLNANP 176
+ Q+++ +Q + + NP
Sbjct: 109 LKQIVLGVQDLLDSPNP 125
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 20/100 (20%)
Query: 77 VIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINV 136
VI G + +P+ G F ++F P YP+ P + + + + +PN+ + G++ LD+L
Sbjct: 38 VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIY--HPNVDKLGRICLDIL---- 91
Query: 137 SHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANP 176
K +W+P I VL+SIQ + NP
Sbjct: 92 -------------KDKWSPA-LQIRTVLLSIQALLSAPNP 117
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 20/100 (20%)
Query: 77 VIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINV 136
VI G + +P+ G F ++F P YP+ P + + + + +PN+ + G++ LD+L
Sbjct: 36 VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIY--HPNVDKLGRICLDIL---- 89
Query: 137 SHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANP 176
K +W+P I VL+SIQ + NP
Sbjct: 90 -------------KDKWSPA-LQIRTVLLSIQALLSAPNP 115
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 20/100 (20%)
Query: 77 VIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINV 136
VI G + +P+ G F ++F P YP+ P + + + + +PN+ + G++ LD+L
Sbjct: 41 VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIY--HPNVDKLGRICLDIL---- 94
Query: 137 SHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANP 176
K +W+P I VL+SIQ + NP
Sbjct: 95 -------------KDKWSPA-LQIRTVLLSIQALLSAPNP 120
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 20/100 (20%)
Query: 77 VIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINV 136
VI G + +P+ G F ++F P YP+ P + + + + +PN+ + G++ LD+L
Sbjct: 40 VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIY--HPNVDKLGRICLDIL---- 93
Query: 137 SHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANP 176
K +W+P I VL+SIQ + NP
Sbjct: 94 -------------KDKWSPA-LQIRTVLLSIQALLSAPNP 119
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 77 VIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINV 136
I G +GTP+ GLF + F YP +PP + F +PN++ G VSL +L
Sbjct: 44 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVSLSIL---- 97
Query: 137 SHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 98 -----------EEDKDWRPAIT-IKQILLGIQE 118
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 20/100 (20%)
Query: 77 VIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINV 136
VI G + +P+ G F ++F P YP+ P + + + + +PN+ + G++ LD+L
Sbjct: 43 VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIY--HPNVDKLGRICLDIL---- 96
Query: 137 SHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANP 176
K +W+P I VL+SIQ + NP
Sbjct: 97 -------------KDKWSPA-LQIRTVLLSIQALLSAPNP 122
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 41 SELAERIHKEWEILEKNLPSSIFVR-ASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPT 99
S A+RI KE + ++ + + I + S I ++ +G GTPY G F DI P
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 100 TYPVTPPLIFYHSYGFDLNPNLHR-DGQVSLDLL 132
YP PP + + + + +PN+ G + LD+L
Sbjct: 61 EYPFKPPKMQFDTKVY--HPNISSVTGAICLDIL 92
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 46 RIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTP 105
RI KE KN P + + I + +GLE T Y + ++ I FP YP+ P
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 106 PLIFY--------HSY----------GFDLNPNLHRDGQV 127
P++++ H Y G D NP+L G +
Sbjct: 84 PIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLI 123
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 44 AERIHKEWEILEKNLPSSIFVR-ASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYP 102
A+RI KE + ++ + + I + S I ++ +G GTPY G F DI P YP
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 103 VTPPLIFYHSYGFDLNPNLHR-DGQVSLDLL 132
PP + + + + +PN+ G + LD+L
Sbjct: 63 FKPPKMQFDTKVY--HPNISSVTGAICLDIL 91
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G +GTP+ GLF + F YP +PP + F +PN++ G V L +L
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL--- 100
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 101 ------------EEDKDWRPAIT-IKQILLGIQE 121
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G +GTP+ GLF + F YP +PP + F +PN++ G V L +L
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL--- 100
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 101 ------------EEDKDWRPAIT-IKQILLGIQE 121
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G +GTP+ GLF + F YP +PP + F +PN++ G V L +L
Sbjct: 44 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL--- 98
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 99 ------------EEDKDWRPAIT-IKQILLGIQE 119
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G +GTP+ GLF + F YP +PP + F +PN++ G V L +L
Sbjct: 45 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL--- 99
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 100 ------------EEDKDWRPAIT-IKQILLGIQE 120
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G +GTP+ GLF + F YP +PP + F +PN++ G V L +L
Sbjct: 43 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL--- 97
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 98 ------------EEDKDWRPAIT-IKQILLGIQE 118
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G +GTP+ GLF + F YP +PP + F +PN++ G V L +L
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL--- 100
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 101 ------------EEDKDWRPAIT-IKQILLGIQE 121
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 77 VIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINV 136
I G +GTP+ GLF + F YP +PP + F +PN++ G V L +L
Sbjct: 44 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVXLSIL---- 97
Query: 137 SHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 98 -----------EEDKDWRPAIT-IKQILLGIQE 118
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G +GTP+ GLF + F YP +PP + F +PN++ G V L +L
Sbjct: 45 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL--- 99
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 100 ------------EEDKDWRPAIT-IKQILLGIQE 120
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G +GTP+ GLF + F YP +PP + F +PN++ G V L +L
Sbjct: 48 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL--- 102
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 103 ------------EEDKDWRPAIT-IKQILLGIQE 123
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 46 RIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTP 105
R+ KE E L+K P + +S + L+ ++ + PY F I FP YP P
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 67
Query: 106 PLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKR 145
P+I + + + +PN+ +GQ+ L +++ S +W C +
Sbjct: 68 PMIKFTTKIY--HPNVDENGQICLPIIS---SENWKPCTK 102
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 46 RIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTP 105
R+ KE E L+K P + +S + L+ ++ + PY F I FP YP P
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 64
Query: 106 PLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKR 145
P+I + + + +PN+ +GQ+ L +++ S +W C +
Sbjct: 65 PMIKFTTKIY--HPNVDENGQICLPIIS---SENWKPCTK 99
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 45 ERIHKEWEILEKNLPSSIFVRA-SAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPV 103
+R+ E++ L N P I + E A+I+G E T + G+F + FP YP+
Sbjct: 10 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 69
Query: 104 TPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRD-SDEKQQWNPQESNIMQ 162
+PP + + F +PN++ DG+V + +L H+ + ++W+P +S + +
Sbjct: 70 SPPKMRFTCEMF--HPNIYPDGRVCISIL-----HAPGDDPMGYESSAERWSPVQS-VEK 121
Query: 163 VLVSIQHKVLNAN 175
+L+S+ + N
Sbjct: 122 ILLSVVSMLAEPN 134
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 45 ERIHKEWEILEKNLPSSIFVRA-SAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPV 103
+R+ E++ L N P I + E A+I+G E T + G+F + FP YP+
Sbjct: 9 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 68
Query: 104 TPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRD-SDEKQQWNPQESNIMQ 162
+PP + + F +PN++ DG+V + +L H+ + ++W+P +S + +
Sbjct: 69 SPPKMRFTCEMF--HPNIYPDGRVCISIL-----HAPGDDPMGYESSAERWSPVQS-VEK 120
Query: 163 VLVSIQHKVLNAN 175
+L+S+ + N
Sbjct: 121 ILLSVVSMLAEPN 133
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G +GTP+ GLF + F YP +PP + F +PN+ G V L +L
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVAPSGTVCLSIL--- 100
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 101 ------------EEDKDWRPAIT-IKQILLGIQE 121
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 45 ERIHKEWEILEKNLPSSIFVRA-SAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPV 103
+R+ E++ L N P I + E A+I+G E T + G+F + FP YP+
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 104 TPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRD-SDEKQQWNPQESNIMQ 162
+PP + + F +PN++ DG+V + +L H+ + ++W+P +S + +
Sbjct: 66 SPPKMRFTCEMF--HPNIYPDGRVCISIL-----HAPGDDPMGYESSAERWSPVQS-VEK 117
Query: 163 VLVSIQHKVLNAN 175
+L+S+ + N
Sbjct: 118 ILLSVVSMLAEPN 130
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 45 ERIHKEWEILEKNLPSSIFVRA-SAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPV 103
+R+ E++ L N P I + E A+I+G E T + G+F + FP YP+
Sbjct: 12 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 71
Query: 104 TPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRD-SDEKQQWNPQESNIMQ 162
+PP + + F +PN++ DG+V + +L H+ + ++W+P +S + +
Sbjct: 72 SPPKMRFTCEMF--HPNIYPDGRVCISIL-----HAPGDDPMGYESSAERWSPVQS-VEK 123
Query: 163 VLVSIQHKVLNAN 175
+L+S+ + N
Sbjct: 124 ILLSVVSMLAEPN 136
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 21/103 (20%)
Query: 75 RAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNL-HRDGQVSLDLLT 133
R I G GTPY G F DI P YP PP + + + + +PN+ + G + LD+L
Sbjct: 78 RGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIW--HPNISSQTGAICLDIL- 134
Query: 134 INVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANP 176
K +W+P + I L+SIQ + + P
Sbjct: 135 ----------------KHEWSPALT-IRTALLSIQAMLADPVP 160
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G +GTP+ GLF + F YP +PP + F +P ++ G V L +L
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPQVYPSGTVCLSIL--- 100
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169
+E + W P + I Q+L+ IQ
Sbjct: 101 ------------EEDKDWRPAIT-IKQILLGIQE 121
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 46 RIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTP 105
RI KE N P + + I + +GLE T Y + ++ I FP YP+ P
Sbjct: 10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 69
Query: 106 PLIFY--------HSY----------GFDLNPNLHRDGQV 127
P++++ H Y G D NP+L G V
Sbjct: 70 PIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLV 109
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 78 IIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLT 133
+I + PY G F +I FP YP PP I + + + +PN+ GQV L +++
Sbjct: 38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIY--HPNIDEKGQVCLPVIS 91
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 20/114 (17%)
Query: 64 VRASAERIDLM--RAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNL 121
++S +DLM + I G T + GL+ + FP YP PP + F +PN+
Sbjct: 35 CKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF--HPNV 92
Query: 122 HRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNAN 175
+ G V L +L +E++ W P + I Q+L+ IQ + + N
Sbjct: 93 YPSGTVCLSIL---------------NEEEGWKPAIT-IKQILLGIQDLLDDPN 130
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 78 IIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLT 133
+I + PY G F +I FP YP PP I + + + +PN+ GQV L +++
Sbjct: 40 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIY--HPNIDEKGQVCLPVIS 93
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 78 IIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNL-HRDGQVSLDLLTINV 136
I G EGTPY G F I P YP PP I + + + +PN+ + G + LD+L
Sbjct: 59 IKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIW--HPNISSQTGAICLDVL---- 112
Query: 137 SHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANP 176
K +W+P + I L+SIQ + + P
Sbjct: 113 -------------KNEWSPALT-IRTALLSIQALLSDPQP 138
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 45 ERIHKEW-EIL--EKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTY 101
+RI +E+ E+L E+ + I V E +R I G TPY G + +I P TY
Sbjct: 11 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 70
Query: 102 PVTPPLIFYHSYGFDLNPNLHR-DGQVSLDLL 132
P PP + + + + +PN+ G + LD+L
Sbjct: 71 PFNPPKVRFITKIW--HPNISSVTGAICLDIL 100
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 45 ERIHKEW-EIL--EKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTY 101
+RI +E+ E+L E+ + I V E +R I G TPY G + +I P TY
Sbjct: 24 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 83
Query: 102 PVTPPLIFYHSYGFDLNPNLHR-DGQVSLDLL 132
P PP + + + + +PN+ G + LD+L
Sbjct: 84 PFNPPKVRFITKIW--HPNISSVTGAICLDIL 113
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 45 ERIHKEW-EIL--EKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTY 101
+RI +E+ E+L E+ + I V E +R I G TPY G + +I P TY
Sbjct: 60 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 119
Query: 102 PVTPPLIFYHSYGFDLNPNLHR-DGQVSLDLL 132
P PP + + + + +PN+ G + LD+L
Sbjct: 120 PFNPPKVRFITKIW--HPNISSVTGAICLDIL 149
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 45 ERIHKEW-EIL--EKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTY 101
+RI +E+ E+L E+ + I V E +R I G TPY G + +I P TY
Sbjct: 9 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 68
Query: 102 PVTPPLIFYHSYGFDLNPNLHR-DGQVSLDLL 132
P PP + + + + +PN+ G + LD+L
Sbjct: 69 PFNPPKVRFITKIW--HPNISSVTGAICLDIL 98
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 45 ERIHKEW-EIL--EKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTY 101
+RI +E+ E+L E+ + I V E +R I G TPY G + +I P TY
Sbjct: 8 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 67
Query: 102 PVTPPLIFYHSYGFDLNPNLHR-DGQVSLDLL 132
P PP + + + + +PN+ G + LD+L
Sbjct: 68 PFNPPKVRFITKIW--HPNISSVTGAICLDIL 97
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 43 LAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYP 102
+++R+ +E L + I + + A + G + T Y + + FP+ YP
Sbjct: 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYP 69
Query: 103 VTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSW 140
PP++ + + + +PN+ + G + LD+L N + S+
Sbjct: 70 YKPPVVKFTTPCW--HPNVDQSGNICLDILKENWTASY 105
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 54 LEKNLPSSIFVRASAERIDLMR--AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYH 111
L KN P F + DL R +IIG T Y G+F + FP YP+ PP + +
Sbjct: 29 LNKN-PVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI 87
Query: 112 SYGFDLNPNLHRDGQVSLDLL 132
+ + +PN+ ++G V + +L
Sbjct: 88 TEIW--HPNVDKNGDVCISIL 106
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G T Y G F + FP YP +PP + + + +PN++ G V + +L
Sbjct: 39 VAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW--HPNIYETGDVCISILHPP 96
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSI 167
V + + ++WNP + N+ +L+S+
Sbjct: 97 VD----DPQSGELPSERWNPTQ-NVRTILLSV 123
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
I G T Y G F + FP YP +PP + + + +PN++ G V + +L
Sbjct: 42 VAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW--HPNIYETGDVCISILHPP 99
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSI 167
V + + ++WNP + N+ +L+S+
Sbjct: 100 VD----DPQSGELPSERWNPTQ-NVRTILLSV 126
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 80 GLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNL-HRDGQVSLDLL 132
G EGTPY G + + P+ YP P I + + L+PN+ R G V LD++
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNR--ILHPNVDERSGSVCLDVI 97
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 76 AVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTIN 135
++IG T Y G F + FP YP PP + + S + +PN+ ++G V + +L +
Sbjct: 38 VLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIW--HPNIDKEGNVCISILH-D 94
Query: 136 VSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNAN 175
W +R +++W P + + +L+S+ + + N
Sbjct: 95 PGDDKWGYER---PEERWLPVHT-VETILLSVISMLTDPN 130
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 46 RIHKEWEILEKNLPSSIFV----RASAERI------DLMR--AVIIGLEGTPYCHGLFFF 93
RI KE++++ K L S + R E + DL + A+I G TPY + F
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 94 DIFFPTTYPVTPPLIFYHSYGFDLNPNLHR-DGQVSLDLL 132
I P++YP+ PP I + L+ N+ G++ L++L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNI-LHSNVKSATGEICLNIL 108
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 40 KSELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPT 99
+ + +R+ +E L + I ++ + I G GT Y + + FP+
Sbjct: 28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 87
Query: 100 TYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLL 132
YP P + + + + +PN+ G +SLD+L
Sbjct: 88 GYPYNAPTVKFLTPCY--HPNVDTQGNISLDIL 118
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 46 RIHKEWEILEKNLPSSIFV----RASAERI------DLMR--AVIIGLEGTPYCHGLFFF 93
RI KE++++ K L S + R E + DL + A+I G TPY + F
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 94 DIFFPTTYPVTPPLIFY 110
I P++YP+ PP I +
Sbjct: 70 LIEVPSSYPMNPPKISF 86
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 46 RIHKEWEILEKNLPSSIFV----RASAERI------DLMR--AVIIGLEGTPYCHGLFFF 93
RI KE++++ K L S + R E + DL + A+I G TPY + F
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 94 DIFFPTTYPVTPPLIFY 110
I P++YP+ PP I +
Sbjct: 70 LIEVPSSYPMNPPKISF 86
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 36 NINPKSELA---ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYC--HGL 90
+ P+ +A +R+ KE L+ + P + + + + + + I+ +EG P G
Sbjct: 13 GLVPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQW-IVDMEGAPGTLYEGE 71
Query: 91 FFFDIF-FPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLT 133
F +F F + YP P + + ++P+++ +G + L +LT
Sbjct: 72 KFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT 115
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 44 AERIHKEWEILEKNLPSSIF--VRASAERIDLMRA----VIIGLEGTPYCHGLFFFDIFF 97
A RI + ++ +LP ++ V S + D ++ VI+ + Y +G F++ F
Sbjct: 29 AARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDF 88
Query: 98 PTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLL 132
YP+ PP + F +PN+ G V L++L
Sbjct: 89 NEVYPIEPPKVVCLKKIF--HPNIDLKGNVCLNIL 121
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 77 VIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIF 109
V+ G E TPY G + + FP +P PP I+
Sbjct: 49 VVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIY 81
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 80 GLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNL-HRDGQVSLDLL 132
G +GTPY G++ + P YP P I + + F +PN+ G V LD++
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIF--HPNIDEASGTVCLDVI 110
>pdb|3NB3|A Chain A, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
At Specific Sites In The Shigella Phage Sf6 Virion As
Structural Components
pdb|3NB3|B Chain B, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
At Specific Sites In The Shigella Phage Sf6 Virion As
Structural Components
pdb|3NB3|C Chain C, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
At Specific Sites In The Shigella Phage Sf6 Virion As
Structural Components
Length = 346
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 223 HFRNRAHQILQIHKAEMKPDDDEEMNQLFIKLLNAFEDNGAYC---------GHYYPKAL 273
HF ++ + +KA +KP+ ++QL+ +L N +G+ Y + L
Sbjct: 214 HFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGL 273
Query: 274 KERRSIS 280
ERR+ S
Sbjct: 274 SERRAQS 280
>pdb|2A01|A Chain A, Crystal Structure Of Lipid-Free Human Apolipoprotein A-I
pdb|2A01|B Chain B, Crystal Structure Of Lipid-Free Human Apolipoprotein A-I
pdb|2A01|C Chain C, Crystal Structure Of Lipid-Free Human Apolipoprotein A-I
pdb|3K2S|A Chain A, Solution Structure Of Double Super Helix Model
pdb|3K2S|B Chain B, Solution Structure Of Double Super Helix Model
Length = 243
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 190 EVFRLNCQAMLVMLQPHMQFKQPHMQFKHLVQGH-FRNRAHQILQIHKAEMKPDDDEEMN 248
E++R + + LQ + K +Q K G R+RA + + + P DE
Sbjct: 113 ELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQ 172
Query: 249 QLFIKLLNAFEDNGAYCGHYYPKALKERRSISN 281
+L +L E+ GA Y+ KA + ++S
Sbjct: 173 RLAARLEALKENGGARLAEYHAKATEHLSTLSE 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,147,526
Number of Sequences: 62578
Number of extensions: 374955
Number of successful extensions: 913
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 104
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)