Query 039638
Match_columns 283
No_of_seqs 274 out of 1542
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0895 Ubiquitin-conjugating 100.0 1.5E-48 3.3E-53 400.9 13.6 210 13-243 826-1047(1101)
2 KOG0417 Ubiquitin-protein liga 100.0 5.8E-44 1.3E-48 298.7 11.1 142 43-204 2-146 (148)
3 COG5078 Ubiquitin-protein liga 100.0 4.5E-42 9.8E-47 292.0 13.5 144 41-204 4-151 (153)
4 PTZ00390 ubiquitin-conjugating 100.0 2E-39 4.4E-44 276.5 13.2 143 42-204 2-147 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.1E-38 2.4E-43 270.5 13.0 141 43-203 2-145 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 3.2E-38 6.8E-43 265.1 13.6 160 43-230 6-166 (171)
7 KOG0419 Ubiquitin-protein liga 100.0 2E-38 4.4E-43 259.5 11.2 140 41-200 3-145 (152)
8 KOG0426 Ubiquitin-protein liga 100.0 1.8E-36 3.9E-41 248.2 13.0 130 40-176 2-132 (165)
9 KOG0418 Ubiquitin-protein liga 100.0 1.1E-35 2.3E-40 256.5 12.2 177 43-239 4-189 (200)
10 PF00179 UQ_con: Ubiquitin-con 100.0 2.7E-35 5.9E-40 246.2 9.9 134 46-198 1-138 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 7.6E-34 1.7E-38 237.9 11.3 134 45-197 2-138 (141)
12 KOG0421 Ubiquitin-protein liga 100.0 1.1E-32 2.4E-37 228.8 11.7 146 39-226 26-171 (175)
13 smart00212 UBCc Ubiquitin-conj 100.0 1.3E-32 2.8E-37 231.5 12.1 137 45-200 1-141 (145)
14 KOG0424 Ubiquitin-protein liga 100.0 2E-32 4.3E-37 227.2 12.1 140 40-199 2-151 (158)
15 KOG0895 Ubiquitin-conjugating 100.0 2E-32 4.4E-37 282.2 14.9 212 11-241 254-478 (1101)
16 KOG0422 Ubiquitin-protein liga 100.0 1.1E-30 2.3E-35 215.9 11.0 143 42-204 2-148 (153)
17 KOG0894 Ubiquitin-protein liga 100.0 6.9E-29 1.5E-33 218.3 14.6 158 39-222 2-159 (244)
18 KOG0427 Ubiquitin conjugating 99.9 2.4E-27 5.2E-32 194.4 11.5 134 38-197 11-144 (161)
19 KOG0423 Ubiquitin-protein liga 99.9 6.3E-28 1.4E-32 205.9 4.9 149 36-204 4-155 (223)
20 KOG0416 Ubiquitin-protein liga 99.9 1.2E-26 2.6E-31 197.7 9.2 138 44-204 5-147 (189)
21 KOG0420 Ubiquitin-protein liga 99.9 2.9E-26 6.3E-31 195.6 8.5 139 39-200 25-171 (184)
22 KOG0428 Non-canonical ubiquiti 99.8 2.1E-20 4.5E-25 167.7 12.3 135 38-196 7-142 (314)
23 KOG0429 Ubiquitin-conjugating 99.8 2.8E-18 6.1E-23 151.9 10.8 148 46-213 23-178 (258)
24 KOG0896 Ubiquitin-conjugating 99.1 3.6E-10 7.9E-15 93.7 6.9 112 45-174 8-124 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.1 5.8E-06 1.3E-10 68.9 5.9 71 87-172 34-105 (133)
26 PF05743 UEV: UEV domain; Int 98.0 2.4E-05 5.2E-10 64.5 8.0 82 75-174 32-118 (121)
27 KOG0897 Predicted ubiquitin-co 98.0 1.2E-05 2.7E-10 65.2 5.8 67 91-175 13-79 (122)
28 PF08694 UFC1: Ubiquitin-fold 97.7 4.5E-05 9.7E-10 64.3 4.7 89 38-133 20-118 (161)
29 KOG2391 Vacuolar sorting prote 97.1 0.0017 3.7E-08 61.9 7.3 81 79-177 56-141 (365)
30 KOG3357 Uncharacterized conser 96.6 0.003 6.5E-08 52.8 4.7 89 37-132 22-120 (167)
31 PF14462 Prok-E2_E: Prokaryoti 96.1 0.06 1.3E-06 44.6 9.5 102 61-172 13-120 (122)
32 PF05773 RWD: RWD domain; Int 95.4 0.05 1.1E-06 42.5 6.1 69 45-114 4-74 (113)
33 smart00591 RWD domain in RING 94.4 0.21 4.5E-06 38.7 7.2 27 87-113 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 91.7 0.29 6.3E-06 42.4 4.7 66 92-174 56-127 (162)
35 PF09765 WD-3: WD-repeat regio 73.5 7.1 0.00015 37.0 5.5 91 41-173 98-188 (291)
36 PLN00061 photosystem II protei 57.5 44 0.00095 28.7 6.6 107 160-276 29-141 (150)
37 PF06113 BRE: Brain and reprod 53.7 33 0.00071 33.2 5.9 34 85-120 61-95 (333)
38 KOG0309 Conserved WD40 repeat- 53.4 41 0.00089 36.1 6.9 38 74-112 451-490 (1081)
39 cd00421 intradiol_dioxygenase 41.2 31 0.00067 29.0 3.3 25 88-112 65-90 (146)
40 KOG4018 Uncharacterized conser 36.9 78 0.0017 28.8 5.3 22 90-111 50-71 (215)
41 cd03457 intradiol_dioxygenase_ 36.5 39 0.00085 29.9 3.4 26 87-112 85-110 (188)
42 PF00615 RGS: Regulator of G p 33.2 1.4E+02 0.0029 22.4 5.6 63 209-271 8-70 (118)
43 cd03459 3,4-PCD Protocatechuat 28.7 65 0.0014 27.7 3.3 25 88-112 72-101 (158)
44 PF10905 DUF2695: Protein of u 27.8 54 0.0012 23.3 2.2 15 252-266 33-47 (53)
45 PF14460 Prok-E2_D: Prokaryoti 27.3 36 0.00078 29.6 1.5 21 107-131 90-110 (175)
46 PF06113 BRE: Brain and reprod 23.4 83 0.0018 30.5 3.3 25 89-113 306-330 (333)
47 TIGR03737 PRTRC_B PRTRC system 22.0 1E+02 0.0023 28.2 3.5 35 119-174 139-173 (228)
48 TIGR02423 protocat_alph protoc 20.6 1.1E+02 0.0023 27.3 3.2 24 88-111 96-124 (193)
49 COG3781 Predicted membrane pro 20.4 4.5E+02 0.0097 25.0 7.3 84 187-270 111-206 (306)
No 1
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-48 Score=400.89 Aligned_cols=210 Identities=42% Similarity=0.724 Sum_probs=196.8
Q ss_pred cccccccCccccCCcchhcccccCCCCchHHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEE
Q 039638 13 KNFARIPTHLLNQNHHFIDHKTININPKSELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFF 92 (283)
Q Consensus 13 ~~~~~v~~~~~~~~h~~~~~~~~~~~~~~~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~ 92 (283)
++|+++.+. .+|||... ...+...+.+++..+.||+.|..++|.||+|+.+|++|++++++|+||.||||++|+|+
T Consensus 826 ~~F~v~~~~---~~~h~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~ 901 (1101)
T KOG0895|consen 826 LRFDVNYDY---MDHHKNAN-DGNKAAEAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFF 901 (1101)
T ss_pred ccccccCch---HHHhhhhc-ccccHHHHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEE
Confidence 789999999 99999643 22333444899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCceeeecCcccCCCcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhh
Q 039638 93 FDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVL 172 (283)
Q Consensus 93 f~i~fP~~YP~~PP~v~F~t~i~r~HPNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~ 172 (283)
||+.||++||..||.|++++++.|+|||+|++|+||||+|+ | |+ |.+.|.|+|+ ++|+|||+|||+|++
T Consensus 902 fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~--t---w~-----g~~~e~w~~~-s~~lq~l~s~q~l~l 970 (1101)
T KOG0895|consen 902 FDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLN--T---WH-----GRGNEVWNPS-SSILQVLVSIQGLVL 970 (1101)
T ss_pred EEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhc--c---cc-----CCCccccCcc-hhHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999 9 99 9999999997 899999999999999
Q ss_pred ccCCCCCCCC------------CCCcCCHHHHHHHHHHHHHHHcccccCCCCcchHHHHHHhhhhcCHHHHHHHHHHhcC
Q 039638 173 NANPYYCHKG------------HPQKSNKEVFRLNCQAMLVMLQPHMQFKQPHMQFKHLVQGHFRNRAHQILQIHKAEMK 240 (283)
Q Consensus 173 ~pnP~~~e~~------------~~~~~n~~~f~~~~~~m~~~~~~~l~~pp~~~~fe~~v~~hf~~~~~~il~~~~~~~~ 240 (283)
+.+||+|||| ++..||+.+|..+|++|+++++ +|| +.|+++|..||+.++..|+++|++|+.
T Consensus 971 ~~~py~ne~gy~~~~g~~~g~~~s~~y~~~~~~~~~~~~~~~~~----~p~--~~~~e~i~~Hf~~~~~ei~~~c~a~~~ 1044 (1101)
T KOG0895|consen 971 NEEPYFNEAGYEKQRGTAEGEKNSRVYNENAFLLTCKSMVYQLR----KPP--KCFEEVIHKHFYLRGVEIMAACEAWIA 1044 (1101)
T ss_pred ccccccCcccccccccccccccccccccchhHHHHHHHHHHHhh----CCc--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 3456999999999999999999 999 999999999999999999999999998
Q ss_pred CCC
Q 039638 241 PDD 243 (283)
Q Consensus 241 ~~~ 243 (283)
+..
T Consensus 1045 ~~~ 1047 (1101)
T KOG0895|consen 1045 GIL 1047 (1101)
T ss_pred hch
Confidence 743
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-44 Score=298.71 Aligned_cols=142 Identities=27% Similarity=0.509 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCccc
Q 039638 43 LAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLH 122 (283)
Q Consensus 43 ~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPNv~ 122 (283)
+.+||.+|++.|++++|+||++.++++|+++|+|+|.||.|||||||+|+++|.||++||++||+|+|+|+| |||||+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkI--yHPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKI--YHPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeeccc--ccCCcC
Confidence 356999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC---CCCCCCCCcCCHHHHHHHHHHH
Q 039638 123 RDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY---YCHKGHPQKSNKEVFRLNCQAM 199 (283)
Q Consensus 123 ~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~---~~e~~~~~~~n~~~f~~~~~~m 199 (283)
..|.|||++|+ ++|+|+ +||..||+||++||.+|||+ .+++|..++.|+..|.++|+.|
T Consensus 80 ~~G~IclDILk-----------------~~WsPA-l~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARew 141 (148)
T KOG0417|consen 80 SNGRICLDILK-----------------DQWSPA-LTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREW 141 (148)
T ss_pred ccccchHHhhh-----------------ccCChh-hHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999 579999 89999999999999999987 5788899999999999999999
Q ss_pred HHHHc
Q 039638 200 LVMLQ 204 (283)
Q Consensus 200 ~~~~~ 204 (283)
+..++
T Consensus 142 t~kyA 146 (148)
T KOG0417|consen 142 TRKYA 146 (148)
T ss_pred HHHHh
Confidence 98876
No 3
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-42 Score=291.99 Aligned_cols=144 Identities=26% Similarity=0.484 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEccCC-CcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCC
Q 039638 41 SELAERIHKEWEILEKNLPSSIFVRASAE-RIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNP 119 (283)
Q Consensus 41 ~~~~kRL~kEl~~L~~~~p~gi~v~~~e~-~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HP 119 (283)
+.+.+||++|++.|++++++||++.+.++ |+..|.++|.||++||||||+|++.|.||++||++||+|+|.|+| |||
T Consensus 4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i--~HP 81 (153)
T COG5078 4 PSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKI--FHP 81 (153)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCC--cCC
Confidence 33899999999999999999999998776 999999999999999999999999999999999999999999999 999
Q ss_pred cccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC---CCCCCCCCcCCHHHHHHHH
Q 039638 120 NLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY---YCHKGHPQKSNKEVFRLNC 196 (283)
Q Consensus 120 Nv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~---~~e~~~~~~~n~~~f~~~~ 196 (283)
|||.+|+||||+|+ ++|+|+ ++|.+||++||+||.+||+. +.++|..++.|++.|.+.|
T Consensus 82 NV~~~G~vCLdIL~-----------------~~WsP~-~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~v 143 (153)
T COG5078 82 NVDPSGNVCLDILK-----------------DRWSPV-YTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKV 143 (153)
T ss_pred CcCCCCCChhHHHh-----------------CCCCcc-ccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHH
Confidence 99999999999999 799999 89999999999999999865 5677778889999999999
Q ss_pred HHHHHHHc
Q 039638 197 QAMLVMLQ 204 (283)
Q Consensus 197 ~~m~~~~~ 204 (283)
+.++..+.
T Consensus 144 r~~~~~~~ 151 (153)
T COG5078 144 REWVKKYA 151 (153)
T ss_pred HHHHHHhc
Confidence 88776554
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2e-39 Score=276.46 Aligned_cols=143 Identities=25% Similarity=0.461 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCcc
Q 039638 42 ELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNL 121 (283)
Q Consensus 42 ~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPNv 121 (283)
++.+||++|+++|++++++||.+.+.++|+..|+++|.||+||||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i--~HPNV 79 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKI--YHPNI 79 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCC--eeceE
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC---CCCCCCCCcCCHHHHHHHHHH
Q 039638 122 HRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY---YCHKGHPQKSNKEVFRLNCQA 198 (283)
Q Consensus 122 ~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~---~~e~~~~~~~n~~~f~~~~~~ 198 (283)
+.+|.||+++|+ ++|+|+ +||.+||++|++||.+|+|. +.++|+.+..|.+.|.+.|+.
T Consensus 80 ~~~G~iCl~iL~-----------------~~W~p~-~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~ 141 (152)
T PTZ00390 80 DKLGRICLDILK-----------------DKWSPA-LQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVARE 141 (152)
T ss_pred CCCCeEECccCc-----------------ccCCCC-CcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHH
Confidence 999999999997 689999 79999999999999999875 456777888888899988888
Q ss_pred HHHHHc
Q 039638 199 MLVMLQ 204 (283)
Q Consensus 199 m~~~~~ 204 (283)
++..++
T Consensus 142 ~~~~~a 147 (152)
T PTZ00390 142 WNQKYA 147 (152)
T ss_pred HHHHHh
Confidence 877665
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-38 Score=270.47 Aligned_cols=141 Identities=30% Similarity=0.536 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCccc
Q 039638 43 LAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLH 122 (283)
Q Consensus 43 ~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPNv~ 122 (283)
+.+||++|+++|++++++|+.+.++++|+..|.++|.||+||||+||.|+++|.||++||++||+|+|.|++ |||||+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i--~HPNv~ 79 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKI--YHPNIN 79 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCc--ccceEC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC---CCCCCCCCcCCHHHHHHHHHHH
Q 039638 123 RDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY---YCHKGHPQKSNKEVFRLNCQAM 199 (283)
Q Consensus 123 ~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~---~~e~~~~~~~n~~~f~~~~~~m 199 (283)
.+|.||+++|+ +.|+|+ ++|.+||++|++||.+|++. +.++|..+..|.+.|.++|+.+
T Consensus 80 ~~G~iCl~il~-----------------~~W~p~-~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~ 141 (147)
T PLN00172 80 SNGSICLDILR-----------------DQWSPA-LTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREW 141 (147)
T ss_pred CCCEEEcccCc-----------------CCCCCc-CcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHH
Confidence 99999999997 689999 79999999999999999875 4567777778888888888877
Q ss_pred HHHH
Q 039638 200 LVML 203 (283)
Q Consensus 200 ~~~~ 203 (283)
+..+
T Consensus 142 ~~~~ 145 (147)
T PLN00172 142 TQRY 145 (147)
T ss_pred HHHh
Confidence 7554
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-38 Score=265.11 Aligned_cols=160 Identities=21% Similarity=0.281 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEc-cCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCcc
Q 039638 43 LAERIHKEWEILEKNLPSSIFVRA-SAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNL 121 (283)
Q Consensus 43 ~~kRL~kEl~~L~~~~p~gi~v~~-~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPNv 121 (283)
+..-|+++++.|++++.+|+.+.. ++.|++.|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|.+ |||||
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~m--wHPNv 83 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKM--WHPNV 83 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhh--cCCCc
Confidence 556799999999999999999987 556999999999999999999999999999999999999999999999 99999
Q ss_pred cCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCCCCCCCCCCcCCHHHHHHHHHHHHH
Q 039638 122 HRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPYYCHKGHPQKSNKEVFRLNCQAMLV 201 (283)
Q Consensus 122 ~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~~~e~~~~~~~n~~~f~~~~~~m~~ 201 (283)
|++|+||+|||..+. .|+++++..+|+|+|. .|+++||+||.+||.+||-. .|| |-++ ..
T Consensus 84 y~~G~vCISILH~pg----dD~~gyE~~~erW~Pv-~tvetIllSiIsmL~~PN~~--SPA-----NVDA--------a~ 143 (171)
T KOG0425|consen 84 YEDGDVCISILHPPG----DDPSGYELPSERWLPV-QTVETILLSIISMLNSPNDE--SPA-----NVDA--------AK 143 (171)
T ss_pred CCCCCEEEEeecCCC----CCcccCCChhhccCCc-cchhHhHHHHHHHHcCCCCC--Ccc-----chHH--------HH
Confidence 999999999999664 2566799999999999 69999999999999999852 333 3332 23
Q ss_pred HHcccccCCCCcchHHHHHHhhhhcCHHH
Q 039638 202 MLQPHMQFKQPHMQFKHLVQGHFRNRAHQ 230 (283)
Q Consensus 202 ~~~~~l~~pp~~~~fe~~v~~hf~~~~~~ 230 (283)
.+| ..+ ++|++.|+...+...+.
T Consensus 144 ~~R----en~--~EykkkV~r~vr~s~e~ 166 (171)
T KOG0425|consen 144 EWR----ENP--EEYKKKVRRCVRRSQEE 166 (171)
T ss_pred HHh----hCH--HHHHHHHHHHHHHHHHh
Confidence 334 334 56666666665554433
No 7
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-38 Score=259.51 Aligned_cols=140 Identities=26% Similarity=0.484 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCc
Q 039638 41 SELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPN 120 (283)
Q Consensus 41 ~~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPN 120 (283)
..+.+||+++++.|++++|.||+..|.++|+..|.|+|+||.+|||+||.|++.|.|+++||.+||.|+|.|.. ||||
T Consensus 3 tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~m--FHPN 80 (152)
T KOG0419|consen 3 TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKM--FHPN 80 (152)
T ss_pred chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeec--cCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC---CCCCCCCCcCCHHHHHHHHH
Q 039638 121 LHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY---YCHKGHPQKSNKEVFRLNCQ 197 (283)
Q Consensus 121 v~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~---~~e~~~~~~~n~~~f~~~~~ 197 (283)
||.+|.+||++|. .+|+|. +++..||.|||+||.+|||. +.|+|..++.|+..|.+.++
T Consensus 81 vya~G~iClDiLq-----------------NrWsp~-Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk 142 (152)
T KOG0419|consen 81 VYADGSICLDILQ-----------------NRWSPT-YDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVK 142 (152)
T ss_pred cCCCCcchHHHHh-----------------cCCCCc-hhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHH
Confidence 9999999999998 589998 99999999999999999974 34455555666666666665
Q ss_pred HHH
Q 039638 198 AML 200 (283)
Q Consensus 198 ~m~ 200 (283)
..+
T Consensus 143 ~~v 145 (152)
T KOG0419|consen 143 ETV 145 (152)
T ss_pred HHH
Confidence 433
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=248.23 Aligned_cols=130 Identities=22% Similarity=0.390 Sum_probs=122.4
Q ss_pred chHHHHHHHHHHHHHHhcCCCCceEEc-cCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCC
Q 039638 40 KSELAERIHKEWEILEKNLPSSIFVRA-SAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLN 118 (283)
Q Consensus 40 ~~~~~kRL~kEl~~L~~~~p~gi~v~~-~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~H 118 (283)
+..++|||++|+++|.+++|+||.+.| +|+|++.|.++|.||+||||+||+|-.++.||.|||.+||+++|...+ ||
T Consensus 2 ~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~--fH 79 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEM--FH 79 (165)
T ss_pred chhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccc--cc
Confidence 457899999999999999999999988 678999999999999999999999999999999999999999999999 99
Q ss_pred CcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCC
Q 039638 119 PNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANP 176 (283)
Q Consensus 119 PNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP 176 (283)
||||.||+||+|||+.+ -.|++++....|.|+|. .+++.||+|+.+||.+||-
T Consensus 80 PNiy~dG~VCISILHaP----GDDP~~YEls~ERWSPV-QSvEKILLSV~SMLaEPNd 132 (165)
T KOG0426|consen 80 PNIYPDGRVCISILHAP----GDDPMGYELSAERWSPV-QSVEKILLSVVSMLAEPND 132 (165)
T ss_pred CcccCCCeEEEEEeeCC----CCCCccchhhhhcCChH-HHHHHHHHHHHHHHcCCCc
Confidence 99999999999999965 34689999999999999 5999999999999998875
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=256.46 Aligned_cols=177 Identities=22% Similarity=0.338 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHhcC---CCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCC
Q 039638 43 LAERIHKEWEILEKNL---PSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNP 119 (283)
Q Consensus 43 ~~kRL~kEl~~L~~~~---p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HP 119 (283)
+.+||++|.+++..++ -.||.+...++++...++.|.||+|||||||.|.++|.+|++|||+||+|+|.|+| |||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkI--wHP 81 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKI--WHP 81 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeee--ecC
Confidence 7899999999999887 58999999999999999999999999999999999999999999999999999999 999
Q ss_pred ccc-CCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCCCCC---CCCCCcCCHHHHHHH
Q 039638 120 NLH-RDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPYYCH---KGHPQKSNKEVFRLN 195 (283)
Q Consensus 120 Nv~-~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~~~e---~~~~~~~n~~~f~~~ 195 (283)
||. .+|.|||++|+ +.|.|+ +||.+||+|||+||.+|+|.++. .++.+..|++.|..+
T Consensus 82 nVSs~tGaICLDilk-----------------d~Wa~s-lTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~T 143 (200)
T KOG0418|consen 82 NVSSQTGAICLDILK-----------------DQWAAS-LTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKT 143 (200)
T ss_pred CCCcccccchhhhhh-----------------cccchh-hhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHH
Confidence 998 89999999998 689999 89999999999999999997543 346788999999999
Q ss_pred HHHHHHHHccc-ccCCC-CcchHHHHHHhhhhcCHHHHHHHHHHhc
Q 039638 196 CQAMLVMLQPH-MQFKQ-PHMQFKHLVQGHFRNRAHQILQIHKAEM 239 (283)
Q Consensus 196 ~~~m~~~~~~~-l~~pp-~~~~fe~~v~~hf~~~~~~il~~~~~~~ 239 (283)
|+.|+..++.- ....| ..+....++...|++...-....++.|-
T Consensus 144 Ar~WT~~fA~~~~~~~~~~~~~v~~l~~mGf~~~~~i~~L~~~~w~ 189 (200)
T KOG0418|consen 144 ARYWTTEFAGGRLPDDPWDKKKVDSLIEMGFSELEAILVLSGSDWN 189 (200)
T ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHHhcccHHHHHHHhhccccc
Confidence 99999888822 11111 2234556667777776555555555554
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.7e-35 Score=246.20 Aligned_cols=134 Identities=33% Similarity=0.594 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCCCCceEEccCC-CcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCcccCC
Q 039638 46 RIHKEWEILEKNLPSSIFVRASAE-RIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRD 124 (283)
Q Consensus 46 RL~kEl~~L~~~~p~gi~v~~~e~-~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPNv~~~ 124 (283)
||++|++.|+++++.|+.+.+.++ |+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++ |||||+.+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i--~HPni~~~ 78 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPI--FHPNIDEN 78 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS---SBTTB-TT
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccc--cccccccc
Confidence 899999999999999999999876 999999999999999999999999999999999999999999999 99999999
Q ss_pred CceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC---CCCCCCCCcCCHHHHHHHHHH
Q 039638 125 GQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY---YCHKGHPQKSNKEVFRLNCQA 198 (283)
Q Consensus 125 G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~---~~e~~~~~~~n~~~f~~~~~~ 198 (283)
|+||+++|+ . +.|+|+ ++|.+||++|++||.+|++. +.+++..+..|++.|.+.|+.
T Consensus 79 G~icl~~l~--~--------------~~W~p~-~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~ 138 (140)
T PF00179_consen 79 GRICLDILN--P--------------ESWSPS-YTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKARE 138 (140)
T ss_dssp SBBGHGGGT--T--------------TTC-TT-SHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHH
T ss_pred ccchhhhhh--c--------------ccCCcc-cccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHH
Confidence 999999998 3 569998 79999999999999988753 333444455566666665554
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=7.6e-34 Score=237.89 Aligned_cols=134 Identities=31% Similarity=0.542 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCcccCC
Q 039638 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRD 124 (283)
Q Consensus 45 kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPNv~~~ 124 (283)
+||++|+++|+++++.|+++.++++|+..|.++|.||++|||+||.|+|.|.||++||++||+|+|.|++ +||||+.+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i--~HpnV~~~ 79 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKI--YHPNVDEN 79 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCc--ccCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC---CCCCCCCCcCCHHHHHHHHH
Q 039638 125 GQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY---YCHKGHPQKSNKEVFRLNCQ 197 (283)
Q Consensus 125 G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~---~~e~~~~~~~n~~~f~~~~~ 197 (283)
|.||+++|. . +.|+|+ ++|.+||++|+++|.+|++. +.+++..+..|.+.|.+.|+
T Consensus 80 G~icl~~l~--~--------------~~W~p~-~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~ 138 (141)
T cd00195 80 GKICLSILK--T--------------HGWSPA-YTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAR 138 (141)
T ss_pred CCCchhhcC--C--------------CCcCCc-CcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHH
Confidence 999999998 3 359999 79999999999999987763 22333333344444444443
No 12
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=228.82 Aligned_cols=146 Identities=20% Similarity=0.362 Sum_probs=127.0
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCC
Q 039638 39 PKSELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLN 118 (283)
Q Consensus 39 ~~~~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~H 118 (283)
......|||++|+..|.....+||++.|+++|++.|.++|.||.+|+|+|-.|++.+.||.+||+.||+|+|.|+. ||
T Consensus 26 ~~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc--~H 103 (175)
T KOG0421|consen 26 DGHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPC--FH 103 (175)
T ss_pred cCchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccc--cC
Confidence 4677899999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCCCCCCCCCCcCCHHHHHHHHHH
Q 039638 119 PNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPYYCHKGHPQKSNKEVFRLNCQA 198 (283)
Q Consensus 119 PNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~~~e~~~~~~~n~~~f~~~~~~ 198 (283)
||||..|.|||+||. ++|+.. +++.+||+|||+||-+||- ....|.++
T Consensus 104 PNVD~~GnIcLDILk-----------------dKWSa~-YdVrTILLSiQSLLGEPNn-------~SPLNaqA------- 151 (175)
T KOG0421|consen 104 PNVDLSGNICLDILK-----------------DKWSAV-YDVRTILLSIQSLLGEPNN-------SSPLNAQA------- 151 (175)
T ss_pred CCccccccchHHHHH-----------------HHHHHH-HhHHHHHHHHHHHhCCCCC-------CCcchhHH-------
Confidence 999999999999998 799998 8999999999999987764 33444332
Q ss_pred HHHHHcccccCCCCcchHHHHHHhhhhc
Q 039638 199 MLVMLQPHMQFKQPHMQFKHLVQGHFRN 226 (283)
Q Consensus 199 m~~~~~~~l~~pp~~~~fe~~v~~hf~~ 226 (283)
.+++. .+ +.|++.+.+.|++
T Consensus 152 -AelW~-----d~--~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 152 -AELWS-----DQ--EEYKKYLEALYKE 171 (175)
T ss_pred -HHHhc-----CH--HHHHHHHHHHhhc
Confidence 22332 23 6777777666654
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.3e-32 Score=231.51 Aligned_cols=137 Identities=31% Similarity=0.532 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhcCCCCceEEccCC-CcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCcccC
Q 039638 45 ERIHKEWEILEKNLPSSIFVRASAE-RIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHR 123 (283)
Q Consensus 45 kRL~kEl~~L~~~~p~gi~v~~~e~-~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPNv~~ 123 (283)
+||++|++.|++++++|+.|.+.++ |+..|+++|.||++|||+||.|.|.|.||++||++||+|+|.|++ +|||||.
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i--~Hp~i~~ 78 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKI--YHPNVDS 78 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCc--eEeeECC
Confidence 5999999999999999999988765 999999999999999999999999999999999999999999998 9999999
Q ss_pred CCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC---CCCCCCCCcCCHHHHHHHHHHHH
Q 039638 124 DGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY---YCHKGHPQKSNKEVFRLNCQAML 200 (283)
Q Consensus 124 ~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~---~~e~~~~~~~n~~~f~~~~~~m~ 200 (283)
+|.||+++|. . +.|+|+ ++|.+||.+|+++|.+|++. +.+++..+..|.+.|.+.|+.++
T Consensus 79 ~G~icl~~l~--~--------------~~W~p~-~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~ 141 (145)
T smart00212 79 SGEICLDILK--Q--------------EKWSPA-TTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWT 141 (145)
T ss_pred CCCEehhhcC--C--------------CCCCCC-CcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence 9999999997 3 689999 79999999999999988764 23333444455555555555433
No 14
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2e-32 Score=227.24 Aligned_cols=140 Identities=23% Similarity=0.396 Sum_probs=119.7
Q ss_pred chHHHHHHHHHHHHHHhcCCCCceEEccC-----CCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCc
Q 039638 40 KSELAERIHKEWEILEKNLPSSIFVRASA-----ERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYG 114 (283)
Q Consensus 40 ~~~~~kRL~kEl~~L~~~~p~gi~v~~~e-----~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i 114 (283)
+..++.||+.|-+.+.++.|-|+++.|.. .|+..|.|.|.||.|||||||.|.+.|.||++||.+||++.|.++.
T Consensus 2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl 81 (158)
T KOG0424|consen 2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL 81 (158)
T ss_pred cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence 45668999999999999999999998742 3789999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCCCCCCC-----CCCcCCH
Q 039638 115 FDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPYYCHKG-----HPQKSNK 189 (283)
Q Consensus 115 ~r~HPNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~~~e~~-----~~~~~n~ 189 (283)
||||||.+|.||||||+ . ..+|+|+ .||.|||+.||.||.+||+. +|| ..+..|+
T Consensus 82 --~HPNVypsgtVcLsiL~--e-------------~~~W~pa-itikqiL~gIqdLL~~Pn~~--~pAq~eA~~~~~~~r 141 (158)
T KOG0424|consen 82 --FHPNVYPSGTVCLSILN--E-------------EKDWRPA-ITIKQILLGIQDLLDTPNIT--SPAQTEAYTIYCQDR 141 (158)
T ss_pred --cCCCcCCCCcEehhhhc--c-------------ccCCCch-hhHHHHHHHHHHHhcCCCCC--CchhhHHHHHHhhCH
Confidence 99999999999999999 2 1469999 59999999999999999984 444 2234555
Q ss_pred HHHHHHHHHH
Q 039638 190 EVFRLNCQAM 199 (283)
Q Consensus 190 ~~f~~~~~~m 199 (283)
..|.+.|++.
T Consensus 142 ~eYekrvr~q 151 (158)
T KOG0424|consen 142 AEYEKRVRAQ 151 (158)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 15
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2e-32 Score=282.22 Aligned_cols=212 Identities=35% Similarity=0.629 Sum_probs=195.2
Q ss_pred hccccccccCccccCCcchhcccccCCCCchHHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcE
Q 039638 11 KYKNFARIPTHLLNQNHHFIDHKTININPKSELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGL 90 (283)
Q Consensus 11 ~~~~~~~v~~~~~~~~h~~~~~~~~~~~~~~~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~ 90 (283)
.|..|+.+++. .+|||.....+....++.+.+|+++|++.+.+++|+||+|++++.+|+..+++|.||.||||++|+
T Consensus 254 ~i~kf~~~ed~---~~~~~~~k~~~~k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~gl 330 (1101)
T KOG0895|consen 254 LIPKFKLVEDK---SFHHYAKKGKSSKPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGL 330 (1101)
T ss_pred chhhhcccccc---ccccccccCCCCCccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCc
Confidence 56789999999 999998777777778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCCCCCceeeecC-cccCCCcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHH
Q 039638 91 FFFDIFFPTTYPVTPPLIFYHSY-GFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQH 169 (283)
Q Consensus 91 F~f~i~fP~~YP~~PP~v~F~t~-i~r~HPNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~ 169 (283)
|.|+|.||..||..||.|+++|. .+|++||+|.+|+|||++|+ | |. |..-+.|+|..++|.|||.+||.
T Consensus 331 f~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLg--T---wt-----g~~~e~wtp~~~sl~qvL~sIQ~ 400 (1101)
T KOG0895|consen 331 FLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLG--T---WT-----GSRREKWTPNGSSLLQVLESIQG 400 (1101)
T ss_pred eeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeee--e---cc-----cccccCCCccccchhhhhhhhhh
Confidence 99999999999999999999998 67999999999999999999 8 98 77889999997899999999999
Q ss_pred hhhccCCCCCCCCC------------CCcCCHHHHHHHHHHHHHHHcccccCCCCcchHHHHHHhhhhcCHHHHHHHHHH
Q 039638 170 KVLNANPYYCHKGH------------PQKSNKEVFRLNCQAMLVMLQPHMQFKQPHMQFKHLVQGHFRNRAHQILQIHKA 237 (283)
Q Consensus 170 Ll~~pnP~~~e~~~------------~~~~n~~~f~~~~~~m~~~~~~~l~~pp~~~~fe~~v~~hf~~~~~~il~~~~~ 237 (283)
|+.+..||+++||- ...++.+++.+....|++.++ +|| ..|+..+++||.-+.+.++..|..
T Consensus 401 Li~~e~Py~ne~ga~~~~~~a~~~qvs~cv~~~aii~vl~~~~~~Ir----rpp--~~fe~~vqeh~s~~~~~vvievs~ 474 (1101)
T KOG0895|consen 401 LILNEEPYFNEPGALQKRTSADPYQVSKCVSEEAIIEVLPMMVYEIR----RPP--EPFESTVQEHYSSREHDVVIEVSA 474 (1101)
T ss_pred hhcccCcccccccccccccCCCccccccccccchhhhhhhhhhhhhc----CCc--cccchHHhhhhcccchhhhhhhhh
Confidence 99999999999982 223777888888888887777 888 999999999999999999999998
Q ss_pred hcCC
Q 039638 238 EMKP 241 (283)
Q Consensus 238 ~~~~ 241 (283)
|..+
T Consensus 475 y~a~ 478 (1101)
T KOG0895|consen 475 YRAG 478 (1101)
T ss_pred cccC
Confidence 8754
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=215.95 Aligned_cols=143 Identities=23% Similarity=0.399 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-eEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCc
Q 039638 42 ELAERIHKEWEILEKNLPSSI-FVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPN 120 (283)
Q Consensus 42 ~~~kRL~kEl~~L~~~~p~gi-~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPN 120 (283)
.+.+||++|+..|+++....+ .+..++.+++.|.++|+ |.+-||..|.|.+.|.||.+|||+||+|.|.|.| ||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tki--YHpN 78 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKI--YHPN 78 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeee--ccCC
Confidence 357899999999999987755 45678899999999999 8999999999999999999999999999999999 9999
Q ss_pred ccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC---CCCCCCCCcCCHHHHHHHHH
Q 039638 121 LHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY---YCHKGHPQKSNKEVFRLNCQ 197 (283)
Q Consensus 121 v~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~---~~e~~~~~~~n~~~f~~~~~ 197 (283)
||+.|.||+.++. + |.|.|++ .+.|||+++.+|+.+|+|. ..+.|+.+..|+..|.++++
T Consensus 79 VDe~gqvClPiis--~--------------EnWkP~T-~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Ae 141 (153)
T KOG0422|consen 79 VDEKGQVCLPIIS--A--------------ENWKPAT-RTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAE 141 (153)
T ss_pred CCCCCceeeeeee--c--------------ccccCcc-cHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHH
Confidence 9999999999998 5 8999995 9999999999999999875 56777889999999999999
Q ss_pred HHHHHHc
Q 039638 198 AMLVMLQ 204 (283)
Q Consensus 198 ~m~~~~~ 204 (283)
.++..+.
T Consensus 142 e~tkK~~ 148 (153)
T KOG0422|consen 142 EFTKKYS 148 (153)
T ss_pred HHHHHhc
Confidence 9887776
No 17
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.9e-29 Score=218.28 Aligned_cols=158 Identities=22% Similarity=0.363 Sum_probs=132.4
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCC
Q 039638 39 PKSELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLN 118 (283)
Q Consensus 39 ~~~~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~H 118 (283)
+++.+.|||++|++.|.++|+++|.++|.++|+..|+.+|.||+||||+||.|+..|.||++||++||.|++.|+.+||-
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk 81 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK 81 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCCCCCCCCCCcCCHHHHHHHHHH
Q 039638 119 PNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPYYCHKGHPQKSNKEVFRLNCQA 198 (283)
Q Consensus 119 PNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~~~e~~~~~~~n~~~f~~~~~~ 198 (283)
+| -++|||+-..|. +.|+|+ |++.+||.++.++|.+..|. .|.....+.+.......+
T Consensus 82 tn----tRLCLSiSDfHP--------------dsWNP~-WsVStILtGLlSFM~e~~pT---tGSI~tS~~~kr~lA~~S 139 (244)
T KOG0894|consen 82 TN----TRLCLSISDFHP--------------DSWNPG-WSVSTILTGLLSFMTEDSPT---TGSIETSDQDKRMLAKSS 139 (244)
T ss_pred cC----ceEEEeccccCc--------------CcCCCc-ccHHHHHHHHHHHHhcCCCc---cCcccccHHHHHHHHHhh
Confidence 98 799999987443 999999 99999999999999998883 343333333333333345
Q ss_pred HHHHHcccccCCCCcchHHHHHHh
Q 039638 199 MLVMLQPHMQFKQPHMQFKHLVQG 222 (283)
Q Consensus 199 m~~~~~~~l~~pp~~~~fe~~v~~ 222 (283)
....++ ++-+.+.|-++|++
T Consensus 140 laFN~k----n~~F~~lFPE~Vee 159 (244)
T KOG0894|consen 140 LAFNLK----NPKFCELFPEVVEE 159 (244)
T ss_pred hhhccC----ChHHHHHhHHHHHH
Confidence 555666 76555666666655
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.4e-27 Score=194.38 Aligned_cols=134 Identities=21% Similarity=0.467 Sum_probs=119.6
Q ss_pred CCchHHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccC
Q 039638 38 NPKSELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDL 117 (283)
Q Consensus 38 ~~~~~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~ 117 (283)
.-+..+.+|||+|+.+++.++|.|+.++ ..+|+..|.+-+.|.+||.|+|..|.+.+.||+.||+..|.|.|..++ ..
T Consensus 11 ~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~-P~ 88 (161)
T KOG0427|consen 11 ALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPA-PL 88 (161)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCC-CC
Confidence 3466789999999999999999999988 567899999999999999999999999999999999999999999986 48
Q ss_pred CCcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCCCCCCCCCCcCCHHHHHHHHH
Q 039638 118 NPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPYYCHKGHPQKSNKEVFRLNCQ 197 (283)
Q Consensus 118 HPNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~~~e~~~~~~~n~~~f~~~~~ 197 (283)
||+||.+|.|||++|. +.|+|+ +++.+|.+||.+||.+..- .....+.+.|.++|+
T Consensus 89 HPHiYSNGHICL~iL~-----------------d~WsPA-msv~SvClSIlSMLSSs~e------KqrP~Dn~~Yvk~C~ 144 (161)
T KOG0427|consen 89 HPHIYSNGHICLDILY-----------------DSWSPA-MSVQSVCLSILSMLSSSKE------KQRPTDNDRYVKNCK 144 (161)
T ss_pred CCceecCCeEEEEeec-----------------ccCCcc-hhhHHHHHHHHHHHccCcc------ccCCCccchhhhhcc
Confidence 9999999999999998 799999 8999999999999976532 234467777777776
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.3e-28 Score=205.92 Aligned_cols=149 Identities=25% Similarity=0.454 Sum_probs=137.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcc
Q 039638 36 NINPKSELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGF 115 (283)
Q Consensus 36 ~~~~~~~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~ 115 (283)
+.+-++...+.+.+|++.|..+||+||.|.+.++|+....+.|.||.||||++|+|+..+.+..|||.+||+-.|.|+|
T Consensus 4 nenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKI- 82 (223)
T KOG0423|consen 4 NENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKI- 82 (223)
T ss_pred ccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeee-
Confidence 4566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC---CCCCCCCCcCCHHHH
Q 039638 116 DLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY---YCHKGHPQKSNKEVF 192 (283)
Q Consensus 116 r~HPNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~---~~e~~~~~~~n~~~f 192 (283)
|||||-.+|.||.+.|. ..|+|. ..|..||+.|..||..|||. +-|+|.....|.+.|
T Consensus 83 -FHPNVaaNGEICVNtLK-----------------kDW~p~-LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeY 143 (223)
T KOG0423|consen 83 -FHPNVAANGEICVNTLK-----------------KDWNPS-LGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEY 143 (223)
T ss_pred -ccCCcccCceehhhhhh-----------------cccCcc-cchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHH
Confidence 99999999999999998 589999 79999999999999999996 345666666788888
Q ss_pred HHHHHHHHHHHc
Q 039638 193 RLNCQAMLVMLQ 204 (283)
Q Consensus 193 ~~~~~~m~~~~~ 204 (283)
...++.|+....
T Consensus 144 a~rARl~TeIHa 155 (223)
T KOG0423|consen 144 ARRARLYTEIHA 155 (223)
T ss_pred HHHHHHHHHhhc
Confidence 888998888877
No 20
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-26 Score=197.65 Aligned_cols=138 Identities=18% Similarity=0.339 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCccc-
Q 039638 44 AERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLH- 122 (283)
Q Consensus 44 ~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPNv~- 122 (283)
-+||-.++..|..+ +-.|...++++..+.+.+.||.||||+||+|+++|.+|++||++.|+|.|.++| |||||+
T Consensus 5 ~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKI--fHPNIDe 79 (189)
T KOG0416|consen 5 KRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKI--FHPNIDE 79 (189)
T ss_pred ccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeec--cCCCchh
Confidence 47999998888654 567888899999999999999999999999999999999999999999999999 999999
Q ss_pred CCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHH-HHHhhhccCC---CCCCCCCCCcCCHHHHHHHHHH
Q 039638 123 RDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVS-IQHKVLNANP---YYCHKGHPQKSNKEVFRLNCQA 198 (283)
Q Consensus 123 ~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~s-Iq~Ll~~pnP---~~~e~~~~~~~n~~~f~~~~~~ 198 (283)
.+|.|||++++ ..|+|. +.|..|+.+ |-.||.-||| .+.|+|..+..+++.|.+.|+.
T Consensus 80 ~SGsVCLDViN-----------------QtWSp~-yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~e 141 (189)
T KOG0416|consen 80 ASGSVCLDVIN-----------------QTWSPL-YDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKE 141 (189)
T ss_pred ccCccHHHHHh-----------------hhhhHH-HHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHH
Confidence 89999999999 589998 899999977 6788889986 4788888899999999999998
Q ss_pred HHHHHc
Q 039638 199 MLVMLQ 204 (283)
Q Consensus 199 m~~~~~ 204 (283)
.+..++
T Consensus 142 Y~~kYA 147 (189)
T KOG0416|consen 142 YIKKYA 147 (189)
T ss_pred HHHHhc
Confidence 888887
No 21
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.9e-26 Score=195.57 Aligned_cols=139 Identities=28% Similarity=0.417 Sum_probs=114.2
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCceEEc--cCCCccc--EEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCc
Q 039638 39 PKSELAERIHKEWEILEKNLPSSIFVRA--SAERIDL--MRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYG 114 (283)
Q Consensus 39 ~~~~~~kRL~kEl~~L~~~~p~gi~v~~--~e~~l~~--w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i 114 (283)
..+.++-||++++.+ .++|+++.... ..+++.. +..+|. |..+.|.||.|.|.+.+|+.||+.||+|.+.|++
T Consensus 25 ~~s~a~lrl~~di~e--lnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV 101 (184)
T KOG0420|consen 25 KVSAALLRLKKDILE--LNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV 101 (184)
T ss_pred cccHHHHHHHhhhhh--ccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence 344555566666554 56888886532 2344444 888888 8889999999999999999999999999999999
Q ss_pred ccCCCcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC---CCCCCCCCcCCHHH
Q 039638 115 FDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY---YCHKGHPQKSNKEV 191 (283)
Q Consensus 115 ~r~HPNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~---~~e~~~~~~~n~~~ 191 (283)
|||||+.+|.|||+||. +.|+|+ .+|.+|+.+++.|+.+|+|. +-|||.....|++.
T Consensus 102 --~HPNId~~GnVCLnILR-----------------edW~P~-lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~ 161 (184)
T KOG0420|consen 102 --YHPNIDLDGNVCLNILR-----------------EDWRPV-LNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREG 161 (184)
T ss_pred --ccCCcCCcchHHHHHHH-----------------hcCccc-cchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHH
Confidence 99999999999999999 789999 79999999999999999864 55677777788888
Q ss_pred HHHHHH-HHH
Q 039638 192 FRLNCQ-AML 200 (283)
Q Consensus 192 f~~~~~-~m~ 200 (283)
|..+|+ +|.
T Consensus 162 F~~~Vr~~m~ 171 (184)
T KOG0420|consen 162 FENNVRRAMS 171 (184)
T ss_pred HHHHHHHHHh
Confidence 888876 444
No 22
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.1e-20 Score=167.66 Aligned_cols=135 Identities=19% Similarity=0.268 Sum_probs=112.2
Q ss_pred CCchHHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccC
Q 039638 38 NPKSELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDL 117 (283)
Q Consensus 38 ~~~~~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~ 117 (283)
+....+.|||++|.++|+ +|-+-....+-|+|++.|+++|.||.||-|+||+|+.+|.||.+||++||.+..+|+.+||
T Consensus 7 N~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRF 85 (314)
T KOG0428|consen 7 NLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRF 85 (314)
T ss_pred cccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCce
Confidence 346678999999999998 6666677889999999999999999999999999999999999999999999999998787
Q ss_pred CCcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCCCCCCC-CCCcCCHHHHHHHH
Q 039638 118 NPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPYYCHKG-HPQKSNKEVFRLNC 196 (283)
Q Consensus 118 HPNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~~~e~~-~~~~~n~~~f~~~~ 196 (283)
--| -+|||||-+ .+.|.|.|+ |+|.+.|++|.++|-.. | +.| .+..|-++..+..+
T Consensus 86 E~n----kKiCLSISg--------------yHPEtWqPS-WSiRTALlAlIgFmPt~-p---~GAlGSlDYpp~ERr~LA 142 (314)
T KOG0428|consen 86 EVN----KKICLSISG--------------YHPETWQPS-WSIRTALLALIGFMPTK-P---EGALGSLDYPPEERRALA 142 (314)
T ss_pred eeC----ceEEEEecC--------------CCccccCcc-hhHHHHHHHHHccccCC-C---CCccccCcCCHHHHHHHH
Confidence 766 789999976 235999999 99999999999987321 2 322 34556666544444
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.8e-18 Score=151.90 Aligned_cols=148 Identities=21% Similarity=0.331 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCC--CCceeeecCcccCCCccc-
Q 039638 46 RIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVT--PPLIFYHSYGFDLNPNLH- 122 (283)
Q Consensus 46 RL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~--PP~v~F~t~i~r~HPNv~- 122 (283)
.|..|+....+.+.+||+|.|+-.+-.+|.++|++..| .|.||+|+|.|.+|++||.. -|+|.|.+.+ |||.|.
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~v--fHP~icp 99 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSV--FHPLICP 99 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccc--cccccCC
Confidence 46677777778889999999999999999999998887 59999999999999999954 7999999998 999999
Q ss_pred CCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhccCCC-----CCCCCCCCcCCHHHHHHHHH
Q 039638 123 RDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNANPY-----YCHKGHPQKSNKEVFRLNCQ 197 (283)
Q Consensus 123 ~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~pnP~-----~~e~~~~~~~n~~~f~~~~~ 197 (283)
.++.+|++-.- ..|.-...+|++||+.||.++.+|+-. ++|+++.+..+.+.|++.|+
T Consensus 100 ~skeLdl~raf-----------------~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvq 162 (258)
T KOG0429|consen 100 KSKELDLNRAF-----------------PEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQ 162 (258)
T ss_pred CccceeHhhhh-----------------hhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHH
Confidence 78999997654 248777789999999999999988643 66888899999999999998
Q ss_pred HHHHHHcccccCCCCc
Q 039638 198 AMLVMLQPHMQFKQPH 213 (283)
Q Consensus 198 ~m~~~~~~~l~~pp~~ 213 (283)
..+...+.++++.|++
T Consensus 163 e~vk~sr~~iyD~ppt 178 (258)
T KOG0429|consen 163 ECVKASRSMIYDEPPT 178 (258)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 8888888777676633
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.6e-10 Score=93.65 Aligned_cols=112 Identities=21% Similarity=0.273 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCCCCc-eEEcc-CCC--cccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCc
Q 039638 45 ERIHKEWEILEKNLPSSI-FVRAS-AER--IDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPN 120 (283)
Q Consensus 45 kRL~kEl~~L~~~~p~gi-~v~~~-e~~--l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPN 120 (283)
-||.+|+..=++..-+|. +-... .+| +..|.++|.||+.|+||+.+|.+.|.+-++||..||.|+|.|++ --+.
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tki--nm~g 85 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKI--NMNG 85 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEe--eecc
Confidence 468888877776654443 33332 333 56799999999999999999999999999999999999999998 3455
Q ss_pred cc-CCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhcc
Q 039638 121 LH-RDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNA 174 (283)
Q Consensus 121 v~-~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~p 174 (283)
|. .+|.|--..+. . -++|+-. +++..||..+.-+++..
T Consensus 86 vn~~~g~Vd~~~i~--~-------------L~~W~~~-y~~~~vl~~lr~~m~~~ 124 (138)
T KOG0896|consen 86 VNSSNGVVDPRDIT--V-------------LARWQRS-YSIKMVLGQLRKEMMSK 124 (138)
T ss_pred cccCCCccCccccc--h-------------hhccccc-chhhHHHHhhhHHHHHH
Confidence 55 56666432222 1 1578887 89999999999776543
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.10 E-value=5.8e-06 Score=68.93 Aligned_cols=71 Identities=24% Similarity=0.444 Sum_probs=58.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCceeeecCc-ccCCCcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHH
Q 039638 87 CHGLFFFDIFFPTTYPVTPPLIFYHSYG-FDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLV 165 (283)
Q Consensus 87 egG~F~f~i~fP~~YP~~PP~v~F~t~i-~r~HPNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~ 165 (283)
.|+.|.+.|.+|++||..||.|....+. +.+=|+|+.+|.||+---. ..-+.|+|. .++.++|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~--------------~~~D~~~P~-~~~~~~l~ 98 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEE--------------LVLDPWDPE-GIIADCLE 98 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCC--------------cccCccCHH-HHHHHHHH
Confidence 6899999999999999999999988643 2268999999999993111 111689998 69999999
Q ss_pred HHHHhhh
Q 039638 166 SIQHKVL 172 (283)
Q Consensus 166 sIq~Ll~ 172 (283)
.++.+|.
T Consensus 99 ~a~~lL~ 105 (133)
T PF14461_consen 99 RAIRLLE 105 (133)
T ss_pred HHHHHHH
Confidence 9999987
No 26
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.02 E-value=2.4e-05 Score=64.51 Aligned_cols=82 Identities=22% Similarity=0.482 Sum_probs=55.8
Q ss_pred EEEEEcCCCCccCCcEE--EEEEEcCCCCCCCCCceeeecC---cccCCCcccCCCceeeecccccccCCccCCCCCCCc
Q 039638 75 RAVIIGLEGTPYCHGLF--FFDIFFPTTYPVTPPLIFYHSY---GFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDE 149 (283)
Q Consensus 75 ~~~I~Gp~~TPYegG~F--~f~i~fP~~YP~~PP~v~F~t~---i~r~HPNv~~~G~VCLslL~~~t~~~w~~~~~~g~~ 149 (283)
-..+.|----.|.|..| -+.|.+|.+||..||.|..... .++-+.+|+.+|+|.+..|.
T Consensus 32 LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~---------------- 95 (121)
T PF05743_consen 32 LLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ---------------- 95 (121)
T ss_dssp EEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH----------------
T ss_pred EEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc----------------
Confidence 34444433345888888 5678899999999999987632 23446699999999999997
Q ss_pred cCCcccCcccHHHHHHHHHHhhhcc
Q 039638 150 KQQWNPQESNIMQVLVSIQHKVLNA 174 (283)
Q Consensus 150 ~e~WsP~~~ti~~VL~sIq~Ll~~p 174 (283)
.|++..++|.+++..++..+...
T Consensus 96 --~W~~~~s~L~~lv~~l~~~F~~~ 118 (121)
T PF05743_consen 96 --NWNPPSSNLVDLVQELQAVFSEE 118 (121)
T ss_dssp --T--TTTS-HHHHHHHHHHCCCHS
T ss_pred --cCCCCCCCHHHHHHHHHHHHhHc
Confidence 56664589999999998887644
No 27
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.2e-05 Score=65.20 Aligned_cols=67 Identities=18% Similarity=0.337 Sum_probs=53.3
Q ss_pred EEEEEEcCCCCCCCCCceeeecCcccCCCcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHh
Q 039638 91 FFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHK 170 (283)
Q Consensus 91 F~f~i~fP~~YP~~PP~v~F~t~i~r~HPNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~L 170 (283)
..+.+.|+++||+.||.++-..+.. -.--|-.+|.||+.+|. + ++|+.+ |+|+.|++.|.++
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~-~~Gyvl~ggAIcmellt--~--------------qgwssa-y~Ve~vi~qiaat 74 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLE-DEGYVLEGGAICMELLT--K--------------QGWSSA-YEVERVIMQIAAT 74 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecc-cCCEEecchhhHHHHHc--c--------------ccccch-hhHHHHHHHHHHH
Confidence 3467789999999999999876541 12223378999999998 6 899997 8999999999998
Q ss_pred hhccC
Q 039638 171 VLNAN 175 (283)
Q Consensus 171 l~~pn 175 (283)
+..-.
T Consensus 75 lVkG~ 79 (122)
T KOG0897|consen 75 LVKGG 79 (122)
T ss_pred hhccc
Confidence 87544
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.72 E-value=4.5e-05 Score=64.34 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=47.9
Q ss_pred CCchHHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcE----------EEEEEEcCCCCCCCCCc
Q 039638 38 NPKSELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGL----------FFFDIFFPTTYPVTPPL 107 (283)
Q Consensus 38 ~~~~~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~----------F~f~i~fP~~YP~~PP~ 107 (283)
.....|..||..|+..|-+ +|....++=..|.-+=.-+.||-|.|-+ |.+.+.+|..||..||.
T Consensus 20 rd~~~W~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pE 93 (161)
T PF08694_consen 20 RDGDLWVQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPE 93 (161)
T ss_dssp TSCHHHHHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS---
T ss_pred CCHHHHHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcc
Confidence 3457899999999999854 2322222222333333456777776655 34556679999999999
Q ss_pred eeeecCcccCCCcccCCCceeeeccc
Q 039638 108 IFYHSYGFDLNPNLHRDGQVSLDLLT 133 (283)
Q Consensus 108 v~F~t~i~r~HPNv~~~G~VCLslL~ 133 (283)
|..-.-.+ --.-.|..|+|||+.=.
T Consensus 94 i~lPeLdG-KTaKMYRGGkIClt~HF 118 (161)
T PF08694_consen 94 IALPELDG-KTAKMYRGGKICLTDHF 118 (161)
T ss_dssp -B-GGGTT-T-SSBCCCCBB---TTH
T ss_pred eeccccCC-chhhhhcCceEeeeccc
Confidence 98764221 24567889999998754
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0017 Score=61.89 Aligned_cols=81 Identities=21% Similarity=0.436 Sum_probs=63.1
Q ss_pred EcCCCCccCCcEEE--EEEEcCCCCCCCCCceeeecC---cccCCCcccCCCceeeecccccccCCccCCCCCCCccCCc
Q 039638 79 IGLEGTPYCHGLFF--FDIFFPTTYPVTPPLIFYHSY---GFDLNPNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQW 153 (283)
Q Consensus 79 ~Gp~~TPYegG~F~--f~i~fP~~YP~~PP~v~F~t~---i~r~HPNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~W 153 (283)
.|---+||.|.+|- +.|.+++.||..||.|..... +...|-+|+.+|+|-|..|+ .|
T Consensus 56 ~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh------------------~W 117 (365)
T KOG2391|consen 56 DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH------------------NW 117 (365)
T ss_pred cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc------------------cC
Confidence 34344678898885 567789999999999876532 11248999999999999998 57
Q ss_pred ccCcccHHHHHHHHHHhhhccCCC
Q 039638 154 NPQESNIMQVLVSIQHKVLNANPY 177 (283)
Q Consensus 154 sP~~~ti~~VL~sIq~Ll~~pnP~ 177 (283)
.|..++|..++.-+.+.+..+.|.
T Consensus 118 ~~pssdLv~Liq~l~a~f~~~pP~ 141 (365)
T KOG2391|consen 118 DPPSSDLVGLIQELIAAFSEDPPV 141 (365)
T ss_pred CCccchHHHHHHHHHHHhcCCCcc
Confidence 777789999998888888876654
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.003 Score=52.76 Aligned_cols=89 Identities=21% Similarity=0.281 Sum_probs=59.0
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcE--------EEEEE--EcCCCCCCCCC
Q 039638 37 INPKSELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGL--------FFFDI--FFPTTYPVTPP 106 (283)
Q Consensus 37 ~~~~~~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~--------F~f~i--~fP~~YP~~PP 106 (283)
......|..||..|++.|-. +|.-..++-..|.-+=.-++||-|-|-+ |.|+| .+|-.||..+|
T Consensus 22 prd~~~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tap 95 (167)
T KOG3357|consen 22 PRDGDLWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAP 95 (167)
T ss_pred CccchHHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCc
Confidence 34466799999999999854 2332233334454444668899888865 34554 56999999999
Q ss_pred ceeeecCcccCCCcccCCCceeeecc
Q 039638 107 LIFYHSYGFDLNPNLHRDGQVSLDLL 132 (283)
Q Consensus 107 ~v~F~t~i~r~HPNv~~~G~VCLslL 132 (283)
.+....-.+ ----.|..|+|||+--
T Consensus 96 eialpeldg-ktakmyrggkiclt~h 120 (167)
T KOG3357|consen 96 EIALPELDG-KTAKMYRGGKICLTDH 120 (167)
T ss_pred cccccccCc-hhhhhhcCceEeeccc
Confidence 997643111 1244578899999643
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.10 E-value=0.06 Score=44.65 Aligned_cols=102 Identities=23% Similarity=0.349 Sum_probs=65.2
Q ss_pred CceEEccCCCcccEEEEEEc--CCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCccc-CC-Cce--eeecccc
Q 039638 61 SIFVRASAERIDLMRAVIIG--LEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPNLH-RD-GQV--SLDLLTI 134 (283)
Q Consensus 61 gi~v~~~e~~l~~w~~~I~G--p~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPNv~-~~-G~V--CLslL~~ 134 (283)
|+.+....+.-..|-+ |.| -+...|....-.+-|.+|..||..+|-+.|..+. +- .+ |.| |-+....
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~------L~~~~G~~iP~~~~~~~~ 85 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPP------LKLADGGPIPNAAEVTQT 85 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCc------eEccCCCcCCchhcchhh
Confidence 5555544343344433 544 3334599999999999999999999988776543 22 23 334 4443321
Q ss_pred cccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhh
Q 039638 135 NVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVL 172 (283)
Q Consensus 135 ~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~ 172 (283)
-.|..|. +-+.+...|+|...+|.+.|.-|...|.
T Consensus 86 ~~G~~wQ---rWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 86 FDGRTWQ---RWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred cCCeeee---eecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 1122243 2344578999998899999999888764
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.35 E-value=0.05 Score=42.54 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEE--cCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCc
Q 039638 45 ERIHKEWEILEKNLPSSIFVRASAERIDLMRAVII--GLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYG 114 (283)
Q Consensus 45 kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~--Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i 114 (283)
.+...|+..|+.--++.+ +.....+...+.+.+. ....+.-....+.+.+.||++||..||.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888876544443 2222334445556662 23344455678999999999999999999988754
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.38 E-value=0.21 Score=38.74 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCceeeecC
Q 039638 87 CHGLFFFDIFFPTTYPVTPPLIFYHSY 113 (283)
Q Consensus 87 egG~F~f~i~fP~~YP~~PP~v~F~t~ 113 (283)
..-.+.+.+.||.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999988754
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=91.70 E-value=0.29 Score=42.42 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=52.0
Q ss_pred EEEEEcCCCCCCCCCceeeecCcccC-CCcccCC-----CceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHH
Q 039638 92 FFDIFFPTTYPVTPPLIFYHSYGFDL-NPNLHRD-----GQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLV 165 (283)
Q Consensus 92 ~f~i~fP~~YP~~PP~v~F~t~i~r~-HPNv~~~-----G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~ 165 (283)
.+.|.|+.+||..+|.|.+.-..|.- +|+++.. ..+||..-. |+ .|.+. .++..+|.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~------~~----------e~~~~-~g~~~~l~ 118 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP------WS----------EWRPS-WGPEGFLD 118 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC------HH----------Hhhhc-cCHHHHHH
Confidence 35689999999999988887766544 4888765 679996554 64 89998 79999999
Q ss_pred HHHHhhhcc
Q 039638 166 SIQHKVLNA 174 (283)
Q Consensus 166 sIq~Ll~~p 174 (283)
.|..-|...
T Consensus 119 rl~~Wl~~a 127 (162)
T PF14457_consen 119 RLFDWLRDA 127 (162)
T ss_pred HHHHHHHHH
Confidence 999887643
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=73.52 E-value=7.1 Score=36.97 Aligned_cols=91 Identities=15% Similarity=0.342 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEccCCCcccEEEEEEcCCCCccCCcEEEEEEEcCCCCCCCCCceeeecCcccCCCc
Q 039638 41 SELAERIHKEWEILEKNLPSSIFVRASAERIDLMRAVIIGLEGTPYCHGLFFFDIFFPTTYPVTPPLIFYHSYGFDLNPN 120 (283)
Q Consensus 41 ~~~~kRL~kEl~~L~~~~p~gi~v~~~e~~l~~w~~~I~Gp~~TPYegG~F~f~i~fP~~YP~~PP~v~F~t~i~r~HPN 120 (283)
+...++|.+|+..|..+.. +.+. .++++...+..+. |+ .....+.|.+|.+||..||.+...-++
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~---D~---~R~H~l~l~l~~~yp~~~p~~~~~~P~------ 162 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIF---DS---SRQHYLELKLPSNYPFEPPSCSLDLPI------ 162 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEE---TT---CEEEEEEEETTTTTTTSEEEECS-TTS------
T ss_pred cHHHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEE---cC---CceEEEEEEECCCCCCCCceeeCCCCc------
Confidence 5566788889988876543 2222 2456777777777 33 256788999999999999976554433
Q ss_pred ccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhc
Q 039638 121 LHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLN 173 (283)
Q Consensus 121 v~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~ 173 (283)
.+ . ..|.+..++|..|+...+..|..
T Consensus 163 ---------~~-~-----------------~~w~~~~ssL~~v~~qF~~~le~ 188 (291)
T PF09765_consen 163 ---------PF-S-----------------LSWSPSQSSLKDVVQQFQEALES 188 (291)
T ss_dssp ----------H-H-----------------HHHHCHT-SHHHHHHHHHHHHHH
T ss_pred ---------ch-h-----------------hhhcccccCHHHHHHHHHHHHHH
Confidence 11 1 46777447899888887777654
No 36
>PLN00061 photosystem II protein Psb27; Provisional
Probab=57.50 E-value=44 Score=28.71 Aligned_cols=107 Identities=11% Similarity=0.143 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCcCCHHHHHHHHHHHHHHHcccccCCCCc-chHHHHHHhhhhcCHHHHHHHHHHh
Q 039638 160 IMQVLVSIQHKVLNANPYYCHKGHPQKSNKEVFRLNCQAMLVMLQPHMQFKQPH-MQFKHLVQGHFRNRAHQILQIHKAE 238 (283)
Q Consensus 160 i~~VL~sIq~Ll~~pnP~~~e~~~~~~~n~~~f~~~~~~m~~~~~~~l~~pp~~-~~fe~~v~~hf~~~~~~il~~~~~~ 238 (283)
=..|+-.|.+|+ +|| |--.+-+.=+..|.+.+++.+..|++.|..+|-+ ..|.+. =..-++.|-+....|
T Consensus 29 ~~~~~~~~~~~f-dp~----e~tksg~~Lpg~Y~kdtr~VV~tLresl~l~p~D~~~~~~a----a~~Ake~IndYisry 99 (150)
T PLN00061 29 GEGVVGAIKSLF-DPN----EKTKSGKKLPKAYLKSAREVVKTLRESLKEDPKDEAKFRRT----ADAAKESIREYLGNW 99 (150)
T ss_pred cccHHHHHHHhc-Ccc----ccccccccCchHHHHHHHHHHHHHHHHHccCCcchHHHHHH----HHHHHHHHHHHHHHh
Confidence 356777888886 443 2211222233446666667677777766676511 122111 112234455666666
Q ss_pred cCCCChHHHHHHHHHHHHHHHhcCcccccc-----chHHHhhh
Q 039638 239 MKPDDDEEMNQLFIKLLNAFEDNGAYCGHY-----YPKALKER 276 (283)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~-----~~~~~~~~ 276 (283)
.....-+ -..-|.-|.+|++..++.-..+ +++.+|+|
T Consensus 100 R~~~~V~-gl~SfttMqtALnsLAghYssyGpnrPLPe~lK~R 141 (150)
T PLN00061 100 RGQKTVA-EEESYVELEKAIRSLASFYSKAGPSAPLPEDVKSE 141 (150)
T ss_pred cCCcccc-ccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 5433222 2345777778888777754444 66677665
No 37
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=53.67 E-value=33 Score=33.23 Aligned_cols=34 Identities=29% Similarity=0.760 Sum_probs=29.8
Q ss_pred ccCCcEEEEEEEcCCCCCCCCCceeeec-CcccCCCc
Q 039638 85 PYCHGLFFFDIFFPTTYPVTPPLIFYHS-YGFDLNPN 120 (283)
Q Consensus 85 PYegG~F~f~i~fP~~YP~~PP~v~F~t-~i~r~HPN 120 (283)
||.|-..+-+|.|...||..||-+.|.. .. |+|.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~--F~pd 95 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDN--FLPD 95 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcC--cCCC
Confidence 6999999999999999999999999963 33 8885
No 38
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=53.45 E-value=41 Score=36.13 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCccCCcEE-EEEEEcCCCCCCC-CCceeeec
Q 039638 74 MRAVIIGLEGTPYCHGLF-FFDIFFPTTYPVT-PPLIFYHS 112 (283)
Q Consensus 74 w~~~I~Gp~~TPYegG~F-~f~i~fP~~YP~~-PP~v~F~t 112 (283)
..+.+-||-.. =.|-+| ++.|.||.+||.. ||++.|..
T Consensus 451 ctvsln~p~~~-~d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 451 CTVSLNCPNHR-VDDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred EEEEecCCCCc-cccceeEEEEEeccccCCCCCCCceEEec
Confidence 34556665433 233333 7789999999997 78998864
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=41.22 E-value=31 Score=28.98 Aligned_cols=25 Identities=32% Similarity=0.679 Sum_probs=22.9
Q ss_pred CcEEEEEEEcCCCCC-CCCCceeeec
Q 039638 88 HGLFFFDIFFPTTYP-VTPPLIFYHS 112 (283)
Q Consensus 88 gG~F~f~i~fP~~YP-~~PP~v~F~t 112 (283)
.|.|.|.-.+|--|| ..||.|+|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 588999999999999 9999999974
No 40
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=36.90 E-value=78 Score=28.80 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEEEEcCCCCCCCCCceeee
Q 039638 90 LFFFDIFFPTTYPVTPPLIFYH 111 (283)
Q Consensus 90 ~F~f~i~fP~~YP~~PP~v~F~ 111 (283)
.+.+.+.++.+||..||-|.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999443
No 41
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=36.52 E-value=39 Score=29.88 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=23.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCceeeec
Q 039638 87 CHGLFFFDIFFPTTYPVTPPLIFYHS 112 (283)
Q Consensus 87 egG~F~f~i~fP~~YP~~PP~v~F~t 112 (283)
+.|.|.|.=.+|--||.+||-|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 36889999999999999999999974
No 42
>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit (IPR001019 from INTERPRO), which can then bind the beta-gamma dimer (IPR001632 from INTERPRO, IPR001770 from INTERPRO) and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilising the G protein transition state. All RGS proteins contain an 'RGS-box' (or RGS domain), which is required for activity. Some small RGS proteins such as RGS1 and RGS4 are comprised of little more than an RGS domain, while others also contain additional domains that confer further functionality []. RGS domains can be found in conjunction with a variety of domains, including: DEP for membrane targeting (IPR000591 from INTERPRO), PDZ for binding to GPCRs (IPR001478 from INTERPRO), PTB for phosphotyrosine-binding (IPR006020 from INTERPRO), RBD for Ras-binding (IPR003116 from INTERPRO), GoLoco for guanine nucleotide inhibitor activity (IPR003109 from INTERPRO), PX for phosphatidylinositol-binding (IPR001683 from INTERPRO), PXA that is associated with PX (IPR003114 from INTERPRO), PH for stimulating guanine nucleotide exchange (IPR001849 from INTERPRO), and GGL (G protein gamma subunit-like) for binding G protein beta subunits (IPR001770 from INTERPRO) []. Those RGS proteins that contain GGL domains can interact with G protein beta subunits to form novel dimers that prevent G protein gamma subunit binding and G protein alpha subunit association, thereby preventing heterotrimer formation.; GO: 0004871 signal transducer activity; PDB: 2BCJ_A 3PSC_A 3PVU_A 1YM7_B 3PVW_A 1OMW_A 2EBZ_A 2BV1_B 2GTP_D 1CMZ_A ....
Probab=33.22 E-value=1.4e+02 Score=22.40 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=49.8
Q ss_pred CCCCcchHHHHHHhhhhcCHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcCccccccchH
Q 039638 209 FKQPHMQFKHLVQGHFRNRAHQILQIHKAEMKPDDDEEMNQLFIKLLNAFEDNGAYCGHYYPK 271 (283)
Q Consensus 209 ~pp~~~~fe~~v~~hf~~~~~~il~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~ 271 (283)
+|+....|.+.+........-..+..|++|...........+...+++.|-..|+.+.--+++
T Consensus 8 ~~~~~~~F~~Fl~~~~~~~~l~F~~~v~~~~~~~~~~~~~~~a~~I~~~fi~~~s~~~l~i~~ 70 (118)
T PF00615_consen 8 DPEGLELFKEFLEKENCEENLQFWLEVEEFKSSESEEQRKKLAQQIYNKFISPGSPNELNIPS 70 (118)
T ss_dssp SHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHTSTTSTTCCSSTH
T ss_pred ChHHHHHHHHHHhHCCCHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhcccccccccccH
Confidence 444446788888888888888889999999998778888888999999999888854444444
No 43
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=28.71 E-value=65 Score=27.68 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.5
Q ss_pred CcEEEEEEEcCCCCC-----CCCCceeeec
Q 039638 88 HGLFFFDIFFPTTYP-----VTPPLIFYHS 112 (283)
Q Consensus 88 gG~F~f~i~fP~~YP-----~~PP~v~F~t 112 (283)
.|.|.|.-.+|--|| ..||.|+|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 588999999999999 8999999874
No 44
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=27.83 E-value=54 Score=23.29 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCcccc
Q 039638 252 IKLLNAFEDNGAYCG 266 (283)
Q Consensus 252 ~~l~~~f~~~~~~~~ 266 (283)
.+++..|+.+|++|+
T Consensus 33 ~~vl~~l~~nGg~CD 47 (53)
T PF10905_consen 33 EDVLEWLRENGGYCD 47 (53)
T ss_pred HHHHHHHHHcCCCcc
Confidence 678888999999874
No 45
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=27.31 E-value=36 Score=29.56 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=15.0
Q ss_pred ceeeecCcccCCCcccCCCceeeec
Q 039638 107 LIFYHSYGFDLNPNLHRDGQVSLDL 131 (283)
Q Consensus 107 ~v~F~t~i~r~HPNv~~~G~VCLsl 131 (283)
+--|+.|. +||+.+|+||+--
T Consensus 90 T~Ly~aPf----~NV~~~g~vC~G~ 110 (175)
T PF14460_consen 90 TPLYHAPF----FNVYSNGSVCWGN 110 (175)
T ss_pred CeeEeCCc----cccCCCCcEeeCC
Confidence 33455554 7999999999843
No 46
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=23.36 E-value=83 Score=30.53 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.8
Q ss_pred cEEEEEEEcCCCCCCCCCceeeecC
Q 039638 89 GLFFFDIFFPTTYPVTPPLIFYHSY 113 (283)
Q Consensus 89 G~F~f~i~fP~~YP~~PP~v~F~t~ 113 (283)
=.|.+.|.+|..||...|.+.|.+-
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEee
Confidence 3478889999999999999999874
No 47
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=21.98 E-value=1e+02 Score=28.23 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=24.1
Q ss_pred CcccCCCceeeecccccccCCccCCCCCCCccCCcccCcccHHHHHHHHHHhhhcc
Q 039638 119 PNLHRDGQVSLDLLTINVSHSWWNCKRDSDEKQQWNPQESNIMQVLVSIQHKVLNA 174 (283)
Q Consensus 119 PNv~~~G~VCLslL~~~t~~~w~~~~~~g~~~e~WsP~~~ti~~VL~sIq~Ll~~p 174 (283)
+||+++|+||+--.. .|...++.+ +......+.+.
T Consensus 139 fNV~~~G~VC~G~~~--------------------~P~~~~~~~-i~~we~~FF~S 173 (228)
T TIGR03737 139 FNVWSNGEICAGNAR--------------------LPDRPTVAN-ISAWEDAFFSS 173 (228)
T ss_pred CccCCCCeEeeCCCc--------------------CCCCcCHHH-HHHHHHHHhCC
Confidence 699999999972211 566567777 77777776543
No 48
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=20.63 E-value=1.1e+02 Score=27.31 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred CcEEEEEEEcCCCCCC-----CCCceeee
Q 039638 88 HGLFFFDIFFPTTYPV-----TPPLIFYH 111 (283)
Q Consensus 88 gG~F~f~i~fP~~YP~-----~PP~v~F~ 111 (283)
.|.|.|.-..|--||. .||-|+|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 5789999999999998 89988886
No 49
>COG3781 Predicted membrane protein [Function unknown]
Probab=20.39 E-value=4.5e+02 Score=25.02 Aligned_cols=84 Identities=12% Similarity=0.024 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHHcccccCCCCcchHHHHHHh-------hhhcCHHHHHHHHHHhcCCCC-----hHHHHHHHHHH
Q 039638 187 SNKEVFRLNCQAMLVMLQPHMQFKQPHMQFKHLVQG-------HFRNRAHQILQIHKAEMKPDD-----DEEMNQLFIKL 254 (283)
Q Consensus 187 ~n~~~f~~~~~~m~~~~~~~l~~pp~~~~fe~~v~~-------hf~~~~~~il~~~~~~~~~~~-----~~~~~~~~~~l 254 (283)
.+...|....-+..+.+|.+|++.|..++-.+.+.. .+.....+|+...-+|+.... +.=.-..+..+
T Consensus 111 a~~~~~l~llvAFahalr~~LR~qp~~~~l~a~l~~~~~~kv~a~~npp~ei~~wmGe~l~~q~r~g~l~~~~~~sl~~~ 190 (306)
T COG3781 111 ADVREFLRLLVAFAHALRLQLRKQPQNEDLAALLPTSDYEKVLASNNPPLEIALWMGEWLQQQRRNGQLDAIQFTSLDRR 190 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHhcCHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 345556666557677788778787755544444333 245667789999999986422 22222334566
Q ss_pred HHHHHhcCccccccch
Q 039638 255 LNAFEDNGAYCGHYYP 270 (283)
Q Consensus 255 ~~~f~~~~~~~~~~~~ 270 (283)
++....+=+.|+.+..
T Consensus 191 L~~~s~vlggCERI~~ 206 (306)
T COG3781 191 LNSISAVLGGCERIAY 206 (306)
T ss_pred HHHHHHHHHhHHHHhc
Confidence 6667777778988753
Done!