BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039640
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 20/126 (15%)
Query: 7 FLPVPYVQELAKKPMAVVPPIYMRPKGDTPTISNGTLNSK------IPVINMQSLYSEES 60
+ V V+ LAK + +P Y+RPK + +I++ L K +P I+++++ S++
Sbjct: 1 MVAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDE 60
Query: 61 MDSE--LAKLDFACKQSGLFQLVNHG----------KEIKEFFYLSMEEKKKYWQD--PG 106
E + +L A G+ L+NHG K +EFF LS+EEK+KY D G
Sbjct: 61 KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 120
Query: 107 EVEGFG 112
+++G+G
Sbjct: 121 KIQGYG 126
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 20/125 (16%)
Query: 8 LPVPYVQELAKKPMAVVPPIYMRPKGDTPTISNGTLNSK------IPVINMQSLYSEESM 61
+ V V+ LAK + +P Y+RPK + +I++ L K +P I+++++ S++
Sbjct: 1 VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 60
Query: 62 DSE--LAKLDFACKQSGLFQLVNHG----------KEIKEFFYLSMEEKKKYWQD--PGE 107
E + +L A G+ L+NHG K +EFF LS+EEK+KY D G+
Sbjct: 61 IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 120
Query: 108 VEGFG 112
++G+G
Sbjct: 121 IQGYG 125
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 20/125 (16%)
Query: 8 LPVPYVQELAKKPMAVVPPIYMRPKGDTPTISNGTLNSK------IPVINMQSLYSEESM 61
+ V V+ LAK + +P Y+RPK + +I++ L K +P I+++++ S++
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61
Query: 62 DSE--LAKLDFACKQSGLFQLVNHG----------KEIKEFFYLSMEEKKKYWQD--PGE 107
E + +L A G+ L+NHG K +EFF LS+EEK+KY D G+
Sbjct: 62 IRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGK 121
Query: 108 VEGFG 112
++G+G
Sbjct: 122 IQGYG 126
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 45 SKIPVINMQSLY-SEESMDSELAK-LDFACKQSGLFQLVNHGKEIKEF------FYLSME 96
+ +P I++ L+ +++ +A+ +D A + +G F VNHG ++ F++S+
Sbjct: 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSIT 66
Query: 97 EKKKY 101
++K+
Sbjct: 67 PEEKW 71
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 45 SKIPVINMQSLY-SEESMDSELAK-LDFACKQSGLFQLVNHGKEIKEF------FYLSME 96
+ +P I++ L+ +++ +A+ +D A + +G F VNHG ++ F++S+
Sbjct: 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSIT 66
Query: 97 EKKKY 101
++K+
Sbjct: 67 PEEKW 71
>pdb|3IYN|M Chain M, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IZO|A Chain A, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|B Chain B, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|C Chain C, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|D Chain D, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|E Chain E, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|1VSZ|N Chain N, Crystal Structure Of Human Adenovirus At 3.5a
Length = 571
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 24 VPPIYMRPKGDTPTISNGTLNSKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLV 81
VPP Y+RP G +I L P+ + +Y ++ +++A L++ S V
Sbjct: 41 VPPRYLRPTGGRNSIRYSEL---APLFDTTRVYLVDNKSTDVASLNYQNDHSNFLTTV 95
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 80 LVNHGKEIKEFFYLSMEEKKKYWQDPGEVEGFGQ---ASFLTIKDEEMTGFF 128
++HG+++ YLS + + W+ G+ EG G+ + +K+ ++T FF
Sbjct: 578 FMSHGRDVNNLLYLSWGDWMEKWKLYGD-EGEGELMVKMIILMKNNDLTNFF 628
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 20 PMAVVPPIYMRPKGDTPTISNGTLNSKIPVINMQSLYSEESMDSELAKLDFACKQS 75
P ++ P Y G SK+ V N+Q L+ + +E+ ++ C+ S
Sbjct: 24 PSHILRPDYADRAGGVSASEEKDRGSKVKVYNIQFLHDDSKKTAEIQRIKTVCQLS 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,693,073
Number of Sequences: 62578
Number of extensions: 183280
Number of successful extensions: 456
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 13
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)