Query 039640
Match_columns 161
No_of_seqs 179 out of 1122
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 20:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gp6_A Leucoanthocyanidin diox 100.0 2.3E-38 7.9E-43 264.2 10.7 153 9-161 3-245 (356)
2 3oox_A Putative 2OG-Fe(II) oxy 100.0 7.7E-32 2.6E-36 221.1 7.4 116 44-161 4-204 (312)
3 1w9y_A 1-aminocyclopropane-1-c 100.0 1E-30 3.6E-35 215.2 7.4 112 45-160 2-189 (319)
4 3on7_A Oxidoreductase, iron/as 100.0 1.5E-28 5.3E-33 198.9 8.3 108 45-161 2-187 (280)
5 1odm_A Isopenicillin N synthas 99.9 8.3E-28 2.8E-32 198.6 8.9 118 44-161 6-227 (331)
6 1dcs_A Deacetoxycephalosporin 99.9 2.8E-28 9.4E-33 200.0 5.9 108 45-160 3-195 (311)
7 2opi_A L-fuculose-1-phosphate 67.2 6.3 0.00021 29.5 4.2 36 46-85 125-160 (212)
8 1e4c_P L-fuculose 1-phosphate 61.6 8.9 0.0003 28.7 4.1 37 45-85 121-157 (215)
9 1pvt_A Sugar-phosphate aldolas 55.0 13 0.00043 28.3 4.0 37 45-85 160-196 (238)
10 2fk5_A Fuculose-1-phosphate al 54.8 9.9 0.00034 28.2 3.3 37 45-85 116-153 (200)
11 1m5a_B Insulin B chain; alpha 54.5 14 0.00049 19.3 2.9 19 62-80 9-27 (30)
12 2v9l_A Rhamnulose-1-phosphate 50.7 14 0.00047 28.8 3.7 36 46-85 179-214 (274)
13 3ocr_A Class II aldolase/adduc 47.0 20 0.0007 27.9 4.1 38 45-85 155-192 (273)
14 4ay7_A Methylcobalamin\: coenz 26.9 84 0.0029 24.8 4.8 24 62-85 304-327 (348)
15 2dbn_A Hypothetical protein YB 25.3 12 0.00041 31.8 -0.6 37 43-83 97-133 (461)
16 3o2g_A Gamma-butyrobetaine dio 24.8 18 0.00062 29.5 0.4 37 46-85 122-158 (388)
17 3m4r_A Uncharacterized protein 23.7 58 0.002 24.4 3.1 34 47-85 156-190 (222)
18 3pnt_A NAD+-glycohydrolase; gl 22.1 67 0.0023 24.5 3.1 36 42-85 206-241 (268)
19 2irp_A Putative aldolase class 21.0 69 0.0024 23.4 3.0 36 45-85 138-176 (208)
No 1
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=100.00 E-value=2.3e-38 Score=264.24 Aligned_cols=153 Identities=27% Similarity=0.530 Sum_probs=126.6
Q ss_pred CchhHHHHHhCCCCCCCCCccCCCCCCCCCCC---CC---CCCCCceeeCCCCCCCChh--HHHHHHHHHHHhhCceEEE
Q 039640 9 PVPYVQELAKKPMAVVPPIYMRPKGDTPTISN---GT---LNSKIPVINMQSLYSEESM--DSELAKLDFACKQSGLFQL 80 (161)
Q Consensus 9 ~~~~v~~l~~~~~~~vp~~y~~p~~~~~~~~~---~~---~~~~iPvIDls~~~~~~~~--~~~~~~l~~A~~~~GFf~l 80 (161)
++++||+|+++|+.+||++|++|+.++|.... .. ...+||||||+.+.+++.. .+++++|.+||++||||||
T Consensus 3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v 82 (356)
T 1gp6_A 3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL 82 (356)
T ss_dssp CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred CcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEE
Confidence 46789999999999999999999888775321 00 1247999999998765542 4588999999999999999
Q ss_pred ecchH----------HHHHHhcCCHHHHhhccCCC--CCccccccccc--------------------------------
Q 039640 81 VNHGK----------EIKEFFYLSMEEKKKYWQDP--GEVEGFGQASF-------------------------------- 116 (161)
Q Consensus 81 ~nhGI----------~~~~fF~lp~e~K~~~~~~~--~~~~GY~~~~~-------------------------------- 116 (161)
+|||| .+++||+||.|+|+++.... ...+||+..+.
T Consensus 83 ~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~ 162 (356)
T 1gp6_A 83 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP 162 (356)
T ss_dssp ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred eCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcc
Confidence 99999 79999999999999987653 25677753210
Q ss_pred ----------------------------cCCChhhHHhhhc---CCcceeEEEeeCCCCC-------CCCCCCCceeEEE
Q 039640 117 ----------------------------LTIKDEEMTGFFE---NGMQSLRMNYYALCPV-------TPLPNNLNLAILI 158 (161)
Q Consensus 117 ----------------------------Lgl~~~~~~~~~~---~~~~~lr~~~YPp~p~-------~~HtD~g~lTiL~ 158 (161)
|||++++|.+.+. .+.+.||+||||||++ ++|||+|+||||+
T Consensus 163 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~ 242 (356)
T 1gp6_A 163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL 242 (356)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEE
Confidence 8999999999987 4778999999999975 8999999999999
Q ss_pred eCC
Q 039640 159 DKG 161 (161)
Q Consensus 159 qd~ 161 (161)
||+
T Consensus 243 qd~ 245 (356)
T 1gp6_A 243 HNM 245 (356)
T ss_dssp ECS
T ss_pred EcC
Confidence 984
No 2
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=99.97 E-value=7.7e-32 Score=221.11 Aligned_cols=116 Identities=19% Similarity=0.241 Sum_probs=97.2
Q ss_pred CCCCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH----------HHHHHhcCCHHHHhhccCCCCCcccccc
Q 039640 44 NSKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK----------EIKEFFYLSMEEKKKYWQDPGEVEGFGQ 113 (161)
Q Consensus 44 ~~~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI----------~~~~fF~lp~e~K~~~~~~~~~~~GY~~ 113 (161)
..+||||||+.+.+ .+++++++|.+||++||||||+|||| .+++||+||.|+|+++.......+||..
T Consensus 4 ~~~iPvIDls~~~~--~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~ 81 (312)
T 3oox_A 4 TSAIDPVSFSLYAK--DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIP 81 (312)
T ss_dssp CCSSCCEETHHHHH--CHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEEC
T ss_pred CCCCCeEEChHhcc--cHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCcccccc
Confidence 46799999998743 22568999999999999999999999 8999999999999998754334455521
Q ss_pred c--------------------------------c--c----------------------------------cCCChhhHH
Q 039640 114 A--------------------------------S--F----------------------------------LTIKDEEMT 125 (161)
Q Consensus 114 ~--------------------------------~--~----------------------------------Lgl~~~~~~ 125 (161)
. + . |||++++|.
T Consensus 82 ~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~ 161 (312)
T 3oox_A 82 FGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFK 161 (312)
T ss_dssp CCCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTH
T ss_pred ccceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 0 0 0 999999999
Q ss_pred hhhcCCcceeEEEeeCCCCC-------CCCCCCCceeEEEeCC
Q 039640 126 GFFENGMQSLRMNYYALCPV-------TPLPNNLNLAILIDKG 161 (161)
Q Consensus 126 ~~~~~~~~~lr~~~YPp~p~-------~~HtD~g~lTiL~qd~ 161 (161)
+.+..+.+.||+||||||++ ++|||+|+||||+||+
T Consensus 162 ~~~~~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~qd~ 204 (312)
T 3oox_A 162 PTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAE 204 (312)
T ss_dssp HHHTTCCCEEEEEEECCCSSCCC--CEEEECCCSSEEEEECCT
T ss_pred HHhcCCcceeeeEecCCCCCCcCCcCccceecCceEEEEeEcC
Confidence 99988889999999999975 7999999999999984
No 3
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=99.96 E-value=1e-30 Score=215.20 Aligned_cols=112 Identities=19% Similarity=0.334 Sum_probs=91.9
Q ss_pred CCCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH----------HHHHHhcCCHHHHhhccCCCCCccccccc
Q 039640 45 SKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK----------EIKEFFYLSMEEKKKYWQDPGEVEGFGQA 114 (161)
Q Consensus 45 ~~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI----------~~~~fF~lp~e~K~~~~~~~~~~~GY~~~ 114 (161)
.+||||||+.+. +..+.+++++|.+||++||||||+|||| .+++||+||.|+|+++.... +||...
T Consensus 2 ~~iPvIDls~l~-~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~---~Gy~~~ 77 (319)
T 1w9y_A 2 ENFPIISLDKVN-GVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVAS---KALEGV 77 (319)
T ss_dssp CCCCEEEGGGGG-STTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTC
T ss_pred CCCCEEECcccC-cccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCC---CCCCcc
Confidence 469999999875 2223668999999999999999999999 89999999999999875321 122110
Q ss_pred --------------------------------cc------------------------cCCChhhHHhhhcC---Cccee
Q 039640 115 --------------------------------SF------------------------LTIKDEEMTGFFEN---GMQSL 135 (161)
Q Consensus 115 --------------------------------~~------------------------Lgl~~~~~~~~~~~---~~~~l 135 (161)
|. |||++++|.+.+.. +.+.|
T Consensus 78 ~~e~~~~d~ke~~~~~~~p~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~l 157 (319)
T 1w9y_A 78 QAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGT 157 (319)
T ss_dssp CCCGGGCCCCEEEEEEEESCCGGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEE
T ss_pred cccCCCCChhhheeeecCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcCCcccee
Confidence 00 89999999998863 56789
Q ss_pred EEEeeCCCCC-------CCCCCCCceeEEEeC
Q 039640 136 RMNYYALCPV-------TPLPNNLNLAILIDK 160 (161)
Q Consensus 136 r~~~YPp~p~-------~~HtD~g~lTiL~qd 160 (161)
|+||||||++ ++|||+|+||||+||
T Consensus 158 rl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd 189 (319)
T 1w9y_A 158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQD 189 (319)
T ss_dssp EEEECCCCSCGGGGSSCCCBCCSSSEEEEEES
T ss_pred EEEecCCCcccccccccccccCCCceEEEEec
Confidence 9999999986 999999999999995
No 4
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=99.95 E-value=1.5e-28 Score=198.95 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=84.9
Q ss_pred CCCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH----------HHHHHhcCCHHHHhhccCCCCCccccccc
Q 039640 45 SKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK----------EIKEFFYLSMEEKKKYWQDPGEVEGFGQA 114 (161)
Q Consensus 45 ~~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI----------~~~~fF~lp~e~K~~~~~~~~~~~GY~~~ 114 (161)
+.||||||+.. +.+++|.+||++||||||+|||| .+++||++ |+|+++...++..+||...
T Consensus 2 ~~IPvIDls~~-------~~~~~l~~A~~~~GFF~v~nHGi~~~li~~~~~~~~~FF~l--e~K~k~~~~~~~~~GY~~~ 72 (280)
T 3on7_A 2 MKLETIDYRAA-------DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFMFNRETHDGFFPA 72 (280)
T ss_dssp --CCEEETTST-------THHHHHHHHHHHHSEEEEESCSSCHHHHHHHHHHHHHHHTS--GGGGGGBCCTTTCCEEECC
T ss_pred CCCCEEECCCh-------hHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHhhh--HHHHHhccCCCCCCccccC
Confidence 57999999863 25799999999999999999999 89999998 7999987665567888532
Q ss_pred c-----------------c------------------------------------cCCCh--hh---HHhhhcCCc-cee
Q 039640 115 S-----------------F------------------------------------LTIKD--EE---MTGFFENGM-QSL 135 (161)
Q Consensus 115 ~-----------------~------------------------------------Lgl~~--~~---~~~~~~~~~-~~l 135 (161)
. . ||++. ++ |.+++.++. +.|
T Consensus 73 ~~~e~~~~~~~~D~kE~~~~~p~~~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~~l 152 (280)
T 3on7_A 73 SISETAKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEMIANSHKTLL 152 (280)
T ss_dssp C--------CCCCSCEEEEECTTSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTTCSSCHHHHHTTCSSCEE
T ss_pred ccccccCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhHHHHHHhcCCccceE
Confidence 1 0 45432 22 556665554 899
Q ss_pred EEEeeCCCCC---------CCCCCCCceeEEEeCC
Q 039640 136 RMNYYALCPV---------TPLPNNLNLAILIDKG 161 (161)
Q Consensus 136 r~~~YPp~p~---------~~HtD~g~lTiL~qd~ 161 (161)
|+||||||++ ++|||+|+||||+||+
T Consensus 153 r~~~YP~~~~~~~~~~~g~~~HtD~g~lTlL~qd~ 187 (280)
T 3on7_A 153 RILHYPPMTGDEEMGAIRAAAHEDINLITVLPTAN 187 (280)
T ss_dssp EEEEECCCCTTCCCCSEEEEEECCCSSEEEEECCS
T ss_pred EEEECCCCCCccccCcccccCCCCCCeEEEEEecC
Confidence 9999999973 7999999999999984
No 5
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=99.94 E-value=8.3e-28 Score=198.61 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=94.2
Q ss_pred CCCCceeeCCCCCCCChh--HHHHHHHHHHHhhCceEEEecchH-------HHHHH-hcCCHHHHhhccCC----CC---
Q 039640 44 NSKIPVINMQSLYSEESM--DSELAKLDFACKQSGLFQLVNHGK-------EIKEF-FYLSMEEKKKYWQD----PG--- 106 (161)
Q Consensus 44 ~~~iPvIDls~~~~~~~~--~~~~~~l~~A~~~~GFf~l~nhGI-------~~~~f-F~lp~e~K~~~~~~----~~--- 106 (161)
...||||||+.+.+++.. .+++++|.+||++||||||+|||| .+++| |+||.|+|+++... .+
T Consensus 6 ~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGil~~~~~~~~~~F~F~lP~eeK~~~~~~Gy~~~~~e~ 85 (331)
T 1odm_A 6 KANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPEEKWDLAIRAYNKEHQDQ 85 (331)
T ss_dssp BCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCCCHHHHHHHHHHHHHHCCHHHHHHHBCTTTCTTCTTC
T ss_pred CCCCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccceeHHHHHHHHHhccCCCCHHHHHhhhhcCCCcCCccc
Confidence 467999999998665532 568999999999999999999998 89999 99999999997430 00
Q ss_pred --------------Ccccc--c------------------c----------ccc------------------------cC
Q 039640 107 --------------EVEGF--G------------------Q----------ASF------------------------LT 118 (161)
Q Consensus 107 --------------~~~GY--~------------------~----------~~~------------------------Lg 118 (161)
..++| + . .|. ||
T Consensus 86 ~~~~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lg 165 (331)
T 1odm_A 86 VRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALG 165 (331)
T ss_dssp SSSEEECCBTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccCCCCChhheEecccCCccccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 00000 0 0 000 89
Q ss_pred CChhhHHhhhcCCcceeE--EEeeC------C---CCC--------CCCCCCCceeEEEeCC
Q 039640 119 IKDEEMTGFFENGMQSLR--MNYYA------L---CPV--------TPLPNNLNLAILIDKG 161 (161)
Q Consensus 119 l~~~~~~~~~~~~~~~lr--~~~YP------p---~p~--------~~HtD~g~lTiL~qd~ 161 (161)
|++++|.+.+..+.+.|| +|||| | |++ ++|||+|+||||+||+
T Consensus 166 l~~~~f~~~~~~~~~~lr~~l~~YP~~~~~~p~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~ 227 (331)
T 1odm_A 166 KEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN 227 (331)
T ss_dssp SCTTTTGGGCCTTTCCCEEEEEEECCCSSCCGGGCEECTTSCEEEEEEECCSSSEEEEEECS
T ss_pred CCHHHHHHHhcCcHHHHHHHHhhCCCcccccccccCCCccccccccccccCCCeEEEEeeCC
Confidence 999999999988889999 99999 8 753 8999999999999984
No 6
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=99.94 E-value=2.8e-28 Score=200.02 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=87.5
Q ss_pred CCCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH----------HHHHHhcCC-HHHHhhccCCC-CCccccc
Q 039640 45 SKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK----------EIKEFFYLS-MEEKKKYWQDP-GEVEGFG 112 (161)
Q Consensus 45 ~~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI----------~~~~fF~lp-~e~K~~~~~~~-~~~~GY~ 112 (161)
..||||||+.+.+++. . ++|.+||++||||||+|||| .+++||+|| .|+|+++.... ...+||.
T Consensus 3 ~~iPvIDls~l~~~~~-~---~~l~~A~~~~GFf~l~nHGi~~~l~~~~~~~~~~fF~lP~~e~K~~~~~~~~~~~~Gy~ 78 (311)
T 1dcs_A 3 TTVPTFSLAELQQGLH-Q---DEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFT 78 (311)
T ss_dssp CCCCEEEHHHHHTTCS-H---HHHHHHHHHTCEEEEESSSCCHHHHHHHHHHHHHHHHHCCHHHHHHTBCSSCCSSSEEE
T ss_pred CCCcEEEchhhcCCCH-H---HHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCcHHHhHHhhccCCCCCCcee
Confidence 5799999998754443 2 39999999999999999999 899999999 99999997653 4567775
Q ss_pred cc----------------------------------cc------------------------cCC----ChhhHHhhhcC
Q 039640 113 QA----------------------------------SF------------------------LTI----KDEEMTGFFEN 130 (161)
Q Consensus 113 ~~----------------------------------~~------------------------Lgl----~~~~~~~~~~~ 130 (161)
.. |. ||| ++++|.+.
T Consensus 79 ~~~~e~~~~~~~~~~~~d~~E~~~~~~~~n~wP~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~f~~~--- 155 (311)
T 1dcs_A 79 GLESESTAQITNTGSYSDYSMCYSMGTADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDC--- 155 (311)
T ss_dssp EC-----------------CEEEEECSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHHSC---
T ss_pred eccccccccccCCCCCCCcceeeeccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcHhHHhhc---
Confidence 21 00 899 88888765
Q ss_pred CcceeEEEeeCCCCC-----------CCCCCCCceeEEEeC
Q 039640 131 GMQSLRMNYYALCPV-----------TPLPNNLNLAILIDK 160 (161)
Q Consensus 131 ~~~~lr~~~YPp~p~-----------~~HtD~g~lTiL~qd 160 (161)
.+.||+||||||++ ++|||+|+||||+||
T Consensus 156 -~~~lrl~~YPp~~~~~~~~~~~~g~~~HtD~g~lTlL~qd 195 (311)
T 1dcs_A 156 -EPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQT 195 (311)
T ss_dssp -CCEEEEEEECC-----------CCEEEEEECSSEEEEEEE
T ss_pred -chhhheecCCCCCcccccCccccccccccCCCeEEEEecC
Confidence 67899999999963 689999999999998
No 7
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=67.18 E-value=6.3 Score=29.47 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=28.9
Q ss_pred CCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH
Q 039640 46 KIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK 85 (161)
Q Consensus 46 ~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI 85 (161)
.||++++.... + .++++.+.+++.+.-.+.+.|||+
T Consensus 125 ~v~~~~y~~~g--~--~~la~~i~~~l~~~~avll~nHG~ 160 (212)
T 2opi_A 125 EIPVIPYYRPG--S--PELAKAVVEAMLKHNSVLLTNHGQ 160 (212)
T ss_dssp CCCEECCCCTT--C--HHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CeEEEcCCCCC--c--HHHHHHHHHHhccCCEEEEcCCCc
Confidence 79999876542 2 457888999998888899999998
No 8
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=61.62 E-value=8.9 Score=28.68 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=28.9
Q ss_pred CCCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH
Q 039640 45 SKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK 85 (161)
Q Consensus 45 ~~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI 85 (161)
..||++++.... . .++++.+.+++.+.-.+.+.|||+
T Consensus 121 ~~ip~~~y~~~g--~--~~la~~i~~~l~~~~avll~nHG~ 157 (215)
T 1e4c_P 121 NSIPCAPYATFG--T--RELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_dssp SCBCEECCCCTT--C--HHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CCcceeeCCCCC--c--HHHHHHHHHHhccCCEEEEcCCCc
Confidence 368998876542 2 357788899998888899999998
No 9
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Probab=55.01 E-value=13 Score=28.26 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=29.2
Q ss_pred CCCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH
Q 039640 45 SKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK 85 (161)
Q Consensus 45 ~~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI 85 (161)
..||++++... ++ .++++++.+++++.-.+.+.|||+
T Consensus 160 ~~v~~~~y~~~--g~--~ela~~i~~~l~~~~avll~nHG~ 196 (238)
T 1pvt_A 160 QGISVVEFEKP--GS--VELGLKTVEKSEGKDAVLWDKHGV 196 (238)
T ss_dssp SCCEEECCCST--TC--HHHHHHHHHHTSSCSEEEETTSCE
T ss_pred CCceEecCCCC--Cc--HHHHHHHHHHhccCCEEEEcCCCc
Confidence 46899988644 22 467888889998888899999998
No 10
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=54.84 E-value=9.9 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=28.4
Q ss_pred CCCcee-eCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH
Q 039640 45 SKIPVI-NMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK 85 (161)
Q Consensus 45 ~~iPvI-Dls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI 85 (161)
..||++ ++... ++ .++++.+.+++.+.-.+.+.|||+
T Consensus 116 ~~ip~~~~y~~~--g~--~ela~~i~~~l~~~~avll~nHG~ 153 (200)
T 2fk5_A 116 KEVPVLAPKTVS--AT--EEAALSVAEALREHRACLLRGHGA 153 (200)
T ss_dssp SCEEEECCSCCS--SS--HHHHHHHHHHHHHCSEEEETTTEE
T ss_pred CCceEecCCCCC--Cc--HHHHHHHHHHhCcCCEEEECCCCc
Confidence 379999 66543 22 457788888888888899999998
No 11
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=54.52 E-value=14 Score=19.25 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhCceEEE
Q 039640 62 DSELAKLDFACKQSGLFQL 80 (161)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l 80 (161)
..+++.+.-.|.+-|||+.
T Consensus 9 s~LVdaL~~vCgdRGF~~~ 27 (30)
T 1m5a_B 9 SHLVEALYLVCGERGFFYT 27 (30)
T ss_dssp HHHHHHHHHHHGGGCEEEC
T ss_pred HHHHHHHHHHhccCccccC
Confidence 4688999999999999973
No 12
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=50.66 E-value=14 Score=28.80 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=28.5
Q ss_pred CCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH
Q 039640 46 KIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK 85 (161)
Q Consensus 46 ~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI 85 (161)
.||++++... ++ .++++++.+++.+.-.+.+.|||+
T Consensus 179 ~v~v~~y~~~--g~--~ela~~i~~~l~~~~avll~nHG~ 214 (274)
T 2v9l_A 179 GVGILPWMVP--GT--DAIGQATAQEMQKHSLVLWPFHGV 214 (274)
T ss_dssp CEEECCCCCS--SS--HHHHHHHHHHHTTCSEEEETTTEE
T ss_pred ceeEecCCCC--CC--HHHHHHHHHHHccCCEEEEcCCCc
Confidence 6888887543 22 467888999998888999999998
No 13
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Probab=46.96 E-value=20 Score=27.95 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=29.5
Q ss_pred CCCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH
Q 039640 45 SKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK 85 (161)
Q Consensus 45 ~~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI 85 (161)
..||++|+..+.. + .++.+++.+++.+.-.+.+.|||+
T Consensus 155 g~v~~~~y~~~~~-~--~el~~~i~~~l~~~~avlL~nHG~ 192 (273)
T 3ocr_A 155 GRVAYHGYEGIAL-D--LSERERLVADLGDKSVMILRNHGL 192 (273)
T ss_dssp TTEEEECCCCSSC-C--HHHHHHHHHHHTTCSEEEETTTEE
T ss_pred CCEEEECCCCCCC-C--HHHHHHHHHHhCcCCEEEEcCCce
Confidence 3688888875421 2 457788888999999999999998
No 14
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=26.91 E-value=84 Score=24.80 Aligned_cols=24 Identities=17% Similarity=-0.121 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhCceEEEecchH
Q 039640 62 DSELAKLDFACKQSGLFQLVNHGK 85 (161)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~nhGI 85 (161)
+++.+++.+.++.-||+.-.+|||
T Consensus 304 e~i~~~v~~~l~~~g~I~~~Ghgi 327 (348)
T 4ay7_A 304 DKIKAEAKEALEGGIDVLAPGCGI 327 (348)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSSC
T ss_pred HHHHHHHHHHHhCCCCEEeCCCcc
Confidence 456677777888889988888998
No 15
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=25.34 E-value=12 Score=31.80 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=26.8
Q ss_pred CCCCCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecc
Q 039640 43 LNSKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNH 83 (161)
Q Consensus 43 ~~~~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nh 83 (161)
++..||.||++.+.++. +.....+..++.|++.|.|.
T Consensus 97 G~~~iP~i~f~di~~~~----~s~~~~~~ir~rG~vVIRgv 133 (461)
T 2dbn_A 97 GDAVWPVLSYADIKAGH----VTAEQREQIKRRGCAVIKGH 133 (461)
T ss_dssp TCCSSCEEEHHHHHHTC----CCHHHHHHHHHHSEEEEETS
T ss_pred CCCCcceecHHHhcCCC----CCHHHHHHHHhccEEEECCC
Confidence 56789999998764332 22455567888999988886
No 16
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=24.82 E-value=18 Score=29.52 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH
Q 039640 46 KIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK 85 (161)
Q Consensus 46 ~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI 85 (161)
++|.||++.+... ++.+.++.+++.++|++.+.|-.+
T Consensus 122 ~~~~~~~~~~l~~---d~~~~~~~~~l~~~Gvv~frg~~~ 158 (388)
T 3o2g_A 122 QLPTLDFEDVLRY---DEHAYKWLSTLKKVGIVRLTGASD 158 (388)
T ss_dssp CCCEEEHHHHHHC---HHHHHHHHHHHHHHSEEEEECCCS
T ss_pred CCCccCHHHHhcC---HHHHHHHHHHHHhcCEEEEeCCCC
Confidence 6899999765422 357899999999999999998766
No 17
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II aldolase, adducin head D carbohydrate metabolism, structural genomics; 2.00A {Thermoplasma acidophilum}
Probab=23.69 E-value=58 Score=24.38 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=25.9
Q ss_pred CceeeCCCCCCCChhHHHHHHHHHHHhhC-ceEEEecchH
Q 039640 47 IPVINMQSLYSEESMDSELAKLDFACKQS-GLFQLVNHGK 85 (161)
Q Consensus 47 iPvIDls~~~~~~~~~~~~~~l~~A~~~~-GFf~l~nhGI 85 (161)
||++++.... . ++.+++.+++.+. -.+.+.|||+
T Consensus 156 v~~~~y~~~g---~--ela~~i~~~l~~~~~avlL~nHG~ 190 (222)
T 3m4r_A 156 VVVLPYIPPG---F--TLAKEVMNCFKKGIDGIVLRKHGL 190 (222)
T ss_dssp EEEECCCCSS---H--HHHHHHHHHCCTTCSEEEETTTEE
T ss_pred ceecCCcCCc---H--HHHHHHHHHHhcCCCEEEECCCCC
Confidence 8888876542 1 5778888898754 6788999998
No 18
>3pnt_A NAD+-glycohydrolase; glycohydrolase, NAD+, virulence factor, hydrolase-hydrolase complex; 2.80A {Streptococcus pyogenes}
Probab=22.10 E-value=67 Score=24.51 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=27.9
Q ss_pred CCCCCCceeeCCCCCCCChhHHHHHHHHHHHhhCceEEEecchH
Q 039640 42 TLNSKIPVINMQSLYSEESMDSELAKLDFACKQSGLFQLVNHGK 85 (161)
Q Consensus 42 ~~~~~iPvIDls~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGI 85 (161)
.+..-.|.||.+.+. .+.+..|.+..|++-|+|.-|
T Consensus 206 eSELimPSId~kgls--------~~dvLaaIe~kGYyEI~nPti 241 (268)
T 3pnt_A 206 ESELIFPSISVKDLK--------SKAVLAEIDAKGYFEIIDPTI 241 (268)
T ss_dssp CCCEEECEEECTTCC--------HHHHHHHHHHHSCCEEESCEE
T ss_pred ccceeecccccCCCc--------HHHHHHHHhhcCeEEecCCeE
Confidence 345558999998873 356777888899999999865
No 19
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus}
Probab=20.95 E-value=69 Score=23.41 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=26.2
Q ss_pred CCCceeeCCCCCCCChhHHHHHHHHHHHhhCc---eEEEecchH
Q 039640 45 SKIPVINMQSLYSEESMDSELAKLDFACKQSG---LFQLVNHGK 85 (161)
Q Consensus 45 ~~iPvIDls~~~~~~~~~~~~~~l~~A~~~~G---Ff~l~nhGI 85 (161)
..||+++.. .+. .++++.+.+++.+.+ .+.+.|||+
T Consensus 138 ~~vp~~~~~---~g~--~~La~~i~~~l~~~~~~~avll~nHG~ 176 (208)
T 2irp_A 138 IKIPIFPNE---QNI--PLLAKEVENYFKTSEDKYGFLIRGHGL 176 (208)
T ss_dssp CEEEEECCC---SCH--HHHHHHHHHHHHHCSCCSCEEETTTEE
T ss_pred cceeeecCC---CCH--HHHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 368888763 121 467788888888765 788999998
Done!