BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039642
         (353 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 102/272 (37%), Positives = 142/272 (52%), Gaps = 4/272 (1%)

Query: 86  INLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGS 145
           ++L      G + DF   +   L  LDL  N F+G +PP  G+ S+L+ L LS N FSG 
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 146 IPPE-IGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXX-XXXXXKGSIPPSLGN--L 201
           +P + +  +  LK+L  S N+ SG +P  +                  G I P+L     
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

Query: 202 TSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNA 261
            +L  + + NN  +G IP  + N   L  L L  N LSG+IP SLG+L+KL  L L  N 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 262 LFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNL 321
           L G IP E+  +K+L  L L +N L G IP  L N TNL  + +  N L+G IP  IG L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 322 KSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353
           ++L  L+L NN+ SG+IP  LG+   L+ L L
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545



 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/236 (38%), Positives = 122/236 (51%), Gaps = 23/236 (9%)

Query: 108 LGYLDLRINQFFGIIPPQIGNLSM-LKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQL 166
           L  LDL  N+F G +P  + NLS  L  L LS N FSG I P         L    KN L
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--------NLCQNPKNTL 396

Query: 167 SGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLK 226
                   G                G IPP+L N + L+ + +  N LSG+IP+ +G+L 
Sbjct: 397 QELYLQNNG--------------FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 227 SLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTL 286
            L DL+L  N L G IP  L  +  L TL L  N L G IP  + N  +L+ + LS N L
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

Query: 287 NGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSL 342
            G IP  +G L NLAIL +  N+ SG+IP E+G+ +SL+ L L+ N  +G+IP ++
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558



 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 141/302 (46%), Gaps = 45/302 (14%)

Query: 85  SINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSG 144
           S++L+   L GT+   S  S   L  L L +N   G IP ++  +  L+ L L FN  +G
Sbjct: 422 SLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 145 SIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSL 204
            IP  +   T+L  +S S N+L+G IP  IGR               G+IP  LG+  SL
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

Query: 205 IYIDIGNNLLSGSIPNEV--------------------------------GNLKSLSDLR 232
           I++D+  NL +G+IP  +                                GNL     +R
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600

Query: 233 LDN-NTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIP 291
            +  N LS   P ++ +    G    HT+  F        N  S+  L +SYN L+G IP
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGG----HTSPTFD-------NNGSMMFLDMSYNMLSGYIP 649

Query: 292 FSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTL 351
             +G++  L IL +G N +SGSIP+E+G+L+ L  L L +N L G IP ++  LT L  +
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709

Query: 352 YL 353
            L
Sbjct: 710 DL 711



 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 131/301 (43%), Gaps = 52/301 (17%)

Query: 99  DFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKL 158
           D   S   +L +LD+  N F   IP  +G+ S L+ L +S N+ SG     I   T LKL
Sbjct: 193 DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251

Query: 159 LSFSKNQLSGFIP------------------HEI-----GRXXXXXXXXXXXXXXKGSIP 195
           L+ S NQ  G IP                   EI     G                G++P
Sbjct: 252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 196 PSLGNLTSLIYIDIGNNLLSGSIP-NEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTK--- 251
           P  G+ + L  + + +N  SG +P + +  ++ L  L L  N  SG +P SL NL+    
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 252 ------------------------LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLN 287
                                   L  LYL  N   G IP  + N   L  L LS+N L+
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431

Query: 288 GSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTK 347
           G+IP SLG+L+ L  L + +N L G IP E+  +K+L  L LD N L+G IP  L N T 
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491

Query: 348 L 348
           L
Sbjct: 492 L 492



 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 101/236 (42%), Gaps = 46/236 (19%)

Query: 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161
            S+  +L ++ L  N+  G IP  IG L  L  L LS N FSG+IP E+G    L  L  
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 162 SKNQLSGFIP----------------------------------------------HEIG 175
           + N  +G IP                                               ++ 
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 176 RXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDN 235
           R               G   P+  N  S++++D+  N+LSG IP E+G++  L  L L +
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

Query: 236 NTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIP 291
           N +SGSIP  +G+L  L  L L +N L G IP  +  L  L+++ LS N L+G IP
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721



 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 74/166 (44%), Gaps = 29/166 (17%)

Query: 74  GIHCNHAGRV---NSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLS 130
           GI      R+   N  N+TS  + G     +F +   + +LD+  N   G IP +IG++ 
Sbjct: 598 GIRSEQLNRLSTRNPCNITSR-VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656

Query: 131 MLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXX 190
            L  L L  N  SGSIP E+G L  L +L  S N+L G IP                   
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ------------------ 698

Query: 191 KGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNN 236
                 ++  LT L  ID+ NN LSG IP E+G  ++    +  NN
Sbjct: 699 ------AMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 737


>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 102/272 (37%), Positives = 142/272 (52%), Gaps = 4/272 (1%)

Query: 86  INLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGS 145
           ++L      G + DF   +   L  LDL  N F+G +PP  G+ S+L+ L LS N FSG 
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330

Query: 146 IPPE-IGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXX-XXXXXKGSIPPSLGN--L 201
           +P + +  +  LK+L  S N+ SG +P  +                  G I P+L     
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390

Query: 202 TSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNA 261
            +L  + + NN  +G IP  + N   L  L L  N LSG+IP SLG+L+KL  L L  N 
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450

Query: 262 LFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNL 321
           L G IP E+  +K+L  L L +N L G IP  L N TNL  + +  N L+G IP  IG L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510

Query: 322 KSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353
           ++L  L+L NN+ SG+IP  LG+   L+ L L
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542



 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/236 (38%), Positives = 122/236 (51%), Gaps = 23/236 (9%)

Query: 108 LGYLDLRINQFFGIIPPQIGNLSM-LKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQL 166
           L  LDL  N+F G +P  + NLS  L  L LS N FSG I P         L    KN L
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--------NLCQNPKNTL 393

Query: 167 SGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLK 226
                   G                G IPP+L N + L+ + +  N LSG+IP+ +G+L 
Sbjct: 394 QELYLQNNG--------------FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439

Query: 227 SLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTL 286
            L DL+L  N L G IP  L  +  L TL L  N L G IP  + N  +L+ + LS N L
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499

Query: 287 NGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSL 342
            G IP  +G L NLAIL +  N+ SG+IP E+G+ +SL+ L L+ N  +G+IP ++
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555



 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 141/302 (46%), Gaps = 45/302 (14%)

Query: 85  SINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSG 144
           S++L+   L GT+   S  S   L  L L +N   G IP ++  +  L+ L L FN  +G
Sbjct: 419 SLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 477

Query: 145 SIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSL 204
            IP  +   T+L  +S S N+L+G IP  IGR               G+IP  LG+  SL
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537

Query: 205 IYIDIGNNLLSGSIPNEV--------------------------------GNLKSLSDLR 232
           I++D+  NL +G+IP  +                                GNL     +R
Sbjct: 538 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 597

Query: 233 LDN-NTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIP 291
            +  N LS   P ++ +    G    HT+  F        N  S+  L +SYN L+G IP
Sbjct: 598 SEQLNRLSTRNPCNITSRVYGG----HTSPTFD-------NNGSMMFLDMSYNMLSGYIP 646

Query: 292 FSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTL 351
             +G++  L IL +G N +SGSIP+E+G+L+ L  L L +N L G IP ++  LT L  +
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706

Query: 352 YL 353
            L
Sbjct: 707 DL 708



 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 131/301 (43%), Gaps = 52/301 (17%)

Query: 99  DFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKL 158
           D   S   +L +LD+  N F   IP  +G+ S L+ L +S N+ SG     I   T LKL
Sbjct: 190 DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 248

Query: 159 LSFSKNQLSGFIP------------------HEI-----GRXXXXXXXXXXXXXXKGSIP 195
           L+ S NQ  G IP                   EI     G                G++P
Sbjct: 249 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308

Query: 196 PSLGNLTSLIYIDIGNNLLSGSIP-NEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTK--- 251
           P  G+ + L  + + +N  SG +P + +  ++ L  L L  N  SG +P SL NL+    
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 368

Query: 252 ------------------------LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLN 287
                                   L  LYL  N   G IP  + N   L  L LS+N L+
Sbjct: 369 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 428

Query: 288 GSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTK 347
           G+IP SLG+L+ L  L + +N L G IP E+  +K+L  L LD N L+G IP  L N T 
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488

Query: 348 L 348
           L
Sbjct: 489 L 489



 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 101/236 (42%), Gaps = 46/236 (19%)

Query: 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161
            S+  +L ++ L  N+  G IP  IG L  L  L LS N FSG+IP E+G    L  L  
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542

Query: 162 SKNQLSGFIP----------------------------------------------HEIG 175
           + N  +G IP                                               ++ 
Sbjct: 543 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 602

Query: 176 RXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDN 235
           R               G   P+  N  S++++D+  N+LSG IP E+G++  L  L L +
Sbjct: 603 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 662

Query: 236 NTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIP 291
           N +SGSIP  +G+L  L  L L +N L G IP  +  L  L+++ LS N L+G IP
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718



 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 74/166 (44%), Gaps = 29/166 (17%)

Query: 74  GIHCNHAGRV---NSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLS 130
           GI      R+   N  N+TS  + G     +F +   + +LD+  N   G IP +IG++ 
Sbjct: 595 GIRSEQLNRLSTRNPCNITSR-VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653

Query: 131 MLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXX 190
            L  L L  N  SGSIP E+G L  L +L  S N+L G IP                   
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ------------------ 695

Query: 191 KGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNN 236
                 ++  LT L  ID+ NN LSG IP E+G  ++    +  NN
Sbjct: 696 ------AMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 734


>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 148/322 (45%), Gaps = 43/322 (13%)

Query: 36  EEAHALLKWKTSLQNQNGSLLPSWTLNNPTKISPCTWFGIHCN---HAGRVNSINLTSAG 92
           ++  ALL+ K  L N   + L SW     T     TW G+ C+      RVN+++L+   
Sbjct: 6   QDKQALLQIKKDLGNP--TTLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 93  L-KGTLHDFSFSSFPHLGYLDLR-INQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEI 150
           L K      S ++ P+L +L +  IN   G IPP I  L+ L +L ++    SG+IP  +
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 151 GYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIG 210
             +  L  L FS N LSG                        ++PPS+ +L +L+ I   
Sbjct: 122 SQIKTLVTLDFSYNALSG------------------------TLPPSISSLPNLVGITFD 157

Query: 211 NNLLSGSIPNEVGNLKSL-SDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYE 269
            N +SG+IP+  G+   L + + +  N L+G IP +  NL  L  + L  N L G     
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL 216

Query: 270 IGNLKSLSDLQLSYNTLNGSIPFSLGNL---TNLAILYIGINALSGSIPNEIGNLKSLLD 326
            G+ K+   + L+ N    S+ F LG +    NL  L +  N + G++P  +  LK L  
Sbjct: 217 FGSDKNTQKIHLAKN----SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 327 LRLDNNTLSGSIPLSLGNLTKL 348
           L +  N L G IP   GNL + 
Sbjct: 273 LNVSFNNLCGEIPQG-GNLQRF 293



 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 8/127 (6%)

Query: 232 RLDNNTLSG-------SIPLSLGNLTKLGTLYLH-TNALFGSIPYEIGNLKSLSDLQLSY 283
           R++N  LSG        IP SL NL  L  LY+   N L G IP  I  L  L  L +++
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 284 NTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLG 343
             ++G+IP  L  +  L  L    NALSG++P  I +L +L+ +  D N +SG+IP S G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 344 NLTKLVT 350
           + +KL T
Sbjct: 171 SFSKLFT 177


>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
          Length = 462

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 111/257 (43%), Gaps = 49/257 (19%)

Query: 96  TLHDFS-FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLT 154
           T+ D S  S    L  L    NQ   + P  + NL+ L+ L +S N+ S      +  LT
Sbjct: 140 TISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLT 195

Query: 155 HLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLL 214
           +L+ L  + NQ+S   P                          LG LT+L  + +  N L
Sbjct: 196 NLESLIATNNQISDITP--------------------------LGILTNLDELSLNGNQL 229

Query: 215 SGSIPNEVGNLKSLS---DLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIG 271
                 ++G L SL+   DL L NN +S   PLS   LTKL  L L  N +    P  + 
Sbjct: 230 K-----DIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LA 280

Query: 272 NLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDN 331
            L +L++L+L+ N L    P S  NL NL  L +  N +S   P  + +L  L  L   N
Sbjct: 281 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSN 336

Query: 332 NTLSGSIPLSLGNLTKL 348
           N +S     SL NLT +
Sbjct: 337 NKVSDVS--SLANLTNI 351



 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 39/201 (19%)

Query: 150 IGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDI 209
           + YL +L  ++FS NQL+   P                          L NLT L+ I +
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--------------------------LKNLTKLVDILM 92

Query: 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYE 269
            NN ++   P  + NL +L+ L L NN ++   PL   NLT L  L L +N +  S    
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTI--SDISA 146

Query: 270 IGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG-SIPNEIGNLKSLLDLR 328
           +  L SL  L  S N +    P  L NLT L  L I  N +S  S+  ++ NL+SL+   
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLI--- 201

Query: 329 LDNNTLSGSIPLS-LGNLTKL 348
             NN +S   PL  L NL +L
Sbjct: 202 ATNNQISDITPLGILTNLDEL 222



 Score = 33.1 bits (74), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 41/158 (25%)

Query: 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161
            +    L  L+L  NQ   I P  I NL  L +L L FN  S   P  +  LT L+ L F
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334

Query: 162 SKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNE 221
           S N++S                             SL NLT++ ++  G+N +S   P  
Sbjct: 335 SNNKVSDV--------------------------SSLANLTNINWLSAGHNQISDLTP-- 366

Query: 222 VGNLKSLSDLRLDNNTLSG---------SIPLSLGNLT 250
           + NL  ++ L L++   +          SIP ++ N+T
Sbjct: 367 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404


>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
          Length = 462

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 112/257 (43%), Gaps = 49/257 (19%)

Query: 96  TLHDFS-FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLT 154
           T+ D S  S    L  L+   NQ   + P  + NL+ L+ L +S N+ S      +  LT
Sbjct: 140 TISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLT 195

Query: 155 HLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLL 214
           +L+ L  + NQ+S   P                          LG LT+L  + +  N L
Sbjct: 196 NLESLIATNNQISDITP--------------------------LGILTNLDELSLNGNQL 229

Query: 215 SGSIPNEVGNLKSLS---DLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIG 271
                 ++G L SL+   DL L NN +S   PLS   LTKL  L L  N +    P  + 
Sbjct: 230 K-----DIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LA 280

Query: 272 NLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDN 331
            L +L++L+L+ N L    P S  NL NL  L +  N +S   P  + +L  L  L   N
Sbjct: 281 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 336

Query: 332 NTLSGSIPLSLGNLTKL 348
           N +S     SL NLT +
Sbjct: 337 NKVSDVS--SLANLTNI 351



 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 39/201 (19%)

Query: 150 IGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDI 209
           + YL +L  ++FS NQL+   P                          L NLT L+ I +
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--------------------------LKNLTKLVDILM 92

Query: 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYE 269
            NN ++   P  + NL +L+ L L NN ++   PL   NLT L  L L +N +  S    
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTI--SDISA 146

Query: 270 IGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG-SIPNEIGNLKSLLDLR 328
           +  L SL  L  S N +    P  L NLT L  L I  N +S  S+  ++ NL+SL+   
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLI--- 201

Query: 329 LDNNTLSGSIPLS-LGNLTKL 348
             NN +S   PL  L NL +L
Sbjct: 202 ATNNQISDITPLGILTNLDEL 222



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 41/158 (25%)

Query: 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161
            +    L  L+L  NQ   I P  I NL  L +L L FN  S   P  +  LT L+ L F
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334

Query: 162 SKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNE 221
             N++S                             SL NLT++ ++  G+N +S   P  
Sbjct: 335 YNNKVSDV--------------------------SSLANLTNINWLSAGHNQISDLTP-- 366

Query: 222 VGNLKSLSDLRLDNNTLSG---------SIPLSLGNLT 250
           + NL  ++ L L++   +          SIP ++ N+T
Sbjct: 367 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404


>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
          Length = 462

 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 91/201 (45%), Gaps = 39/201 (19%)

Query: 150 IGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDI 209
           + YL +L  ++FS NQL+   P                          L NLT L+ I +
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--------------------------LKNLTKLVDILM 92

Query: 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYE 269
            NN ++   P  + NL +L+ L L NN ++   PL   NLT L  L L +N +  S    
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTI--SDISA 146

Query: 270 IGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG-SIPNEIGNLKSLLDLR 328
           +  L SL  L  S N +    P  L NLT L  L I  N +S  S+  ++ NL+SL+   
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLI--- 201

Query: 329 LDNNTLSGSIPLS-LGNLTKL 348
             NN +S   PL  L NL +L
Sbjct: 202 ATNNQISDITPLGILTNLDEL 222



 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 111/257 (43%), Gaps = 49/257 (19%)

Query: 96  TLHDFS-FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLT 154
           T+ D S  S    L  L    NQ   + P  + NL+ L+ L +S N+ S      +  LT
Sbjct: 140 TISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLT 195

Query: 155 HLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLL 214
           +L+ L  + NQ+S   P                          LG LT+L  + +  N L
Sbjct: 196 NLESLIATNNQISDITP--------------------------LGILTNLDELSLNGNQL 229

Query: 215 SGSIPNEVGNLKSLS---DLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIG 271
                 ++G L SL+   DL L NN +S   PLS   LTKL  L L  N +    P  + 
Sbjct: 230 K-----DIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LA 280

Query: 272 NLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDN 331
            L +L++L+L+ N L    P S  NL NL  L +  N +S   P  + +L  L  L   N
Sbjct: 281 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 336

Query: 332 NTLSGSIPLSLGNLTKL 348
           N +S     SL NLT +
Sbjct: 337 NKVSDVS--SLANLTNI 351



 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 41/152 (26%)

Query: 108 LGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLS 167
           L  L+L  NQ   I P  I NL  L +L L FN  S   P  +  LT L+ L F  N++S
Sbjct: 285 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 340

Query: 168 GFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKS 227
                                        SL NLT++ ++  G+N +S   P  + NL  
Sbjct: 341 DV--------------------------SSLANLTNINWLSAGHNQISDLTP--LANLTR 372

Query: 228 LSDLRLDNNTLSG---------SIPLSLGNLT 250
           ++ L L++   +          SIP ++ N+T
Sbjct: 373 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404


>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors A29
          Length = 270

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 70  CTWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNL 129
           C   G  C+     NS++ +S  L     +    +      LDL+ N+   +       L
Sbjct: 5   CKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADT----KKLDLQSNKLSSLPSKAFHRL 60

Query: 130 SMLKFLGLSFNQFSGSIPPEI-GYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXX 188
           + L+ L L+ N+   ++P  I   L +L+ L  + N+L   +P  +              
Sbjct: 61  TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDR 118

Query: 189 XXKGSIPPSL-GNLTSLIYIDIGNNLLSGSIPNEV-GNLKSLSDLRLDNNTLSGSIPLSL 246
               S+PP +  +LT L Y+ +G N L  S+P  V   L SL +LRL NN L      + 
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177

Query: 247 GNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYN----TLNGSI 290
             LT+L TL L  N L         +L+ L  LQL  N    T NG I
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII 225



 Score = 36.2 bits (82), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 224 NLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEI-GNLKSLSDLQLS 282
            L +L++LRLD N L    P    +LTKL  L L  N L  S+P  +   L SL +L+L 
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLY 165

Query: 283 YNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNN 332
            N L      +   LT L  L +  N L         +L+ L  L+L  N
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215



 Score = 34.7 bits (78), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 54/131 (41%), Gaps = 2/131 (1%)

Query: 224 NLKSLSDLRLDNNTLSGSIPLSL-GNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLS 282
            LK+L  L + +N L  ++P+ +   L  L  L L  N L    P    +L  L+ L L 
Sbjct: 83  ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141

Query: 283 YNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSL 342
           YN L          LT+L  L +  N L          L  L  L+LDNN L      + 
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

Query: 343 GNLTKLVTLYL 353
            +L KL  L L
Sbjct: 202 DSLEKLKMLQL 212



 Score = 31.2 bits (69), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 46/123 (37%), Gaps = 24/123 (19%)

Query: 231 LRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSI 290
           L L +N LS     +   LTKL  LYL+ N L                      TL   I
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL---------------------QTLPAGI 80

Query: 291 PFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVT 350
                 L NL  L++  N L          L +L +LRLD N L    P    +LTKL  
Sbjct: 81  ---FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137

Query: 351 LYL 353
           L L
Sbjct: 138 LSL 140


>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
 pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
          Length = 461

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 104/236 (44%), Gaps = 48/236 (20%)

Query: 116 NQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIG 175
           NQ   + P  + NL+ L+ L +S N+ S      +  LT+L+ L  + NQ+S   P    
Sbjct: 160 NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP---- 211

Query: 176 RXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLS---DLR 232
                                 LG LT+L  + +  N L      ++G L SL+   DL 
Sbjct: 212 ----------------------LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDLD 244

Query: 233 LDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF 292
           L NN +S   PLS   LTKL  L L  N +    P  +  L +L++L+L+ N L    P 
Sbjct: 245 LANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 300

Query: 293 SLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKL 348
           S  NL NL  L +  N +S   P  + +L  L  L   NN +S     SL NLT +
Sbjct: 301 S--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVS--SLANLTNI 350



 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 97/243 (39%), Gaps = 73/243 (30%)

Query: 150 IGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDI 209
           + YL +L  ++FS NQL+   P                          L NLT L+ I +
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--------------------------LKNLTKLVDILM 92

Query: 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNAL------- 262
            NN ++   P  + NL +L+ L L NN ++   PL   NLT L  L L +N +       
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALS 148

Query: 263 ---------FGSIPYE---IGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINAL 310
                    FG+   +   + NL +L  L +S N +  S    L  LTNL  L    N +
Sbjct: 149 GLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQI 206

Query: 311 SGSIP-----------------NEIGNLKS---LLDLRLDNNTLSGSIPLSLGNLTKLVT 350
           S   P                  +IG L S   L DL L NN +S   PLS   LTKL  
Sbjct: 207 SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTE 264

Query: 351 LYL 353
           L L
Sbjct: 265 LKL 267



 Score = 33.1 bits (74), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 41/158 (25%)

Query: 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161
            +    L  L+L  NQ   I P  I NL  L +L L FN  S   P  +  LT L+ L F
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 333

Query: 162 SKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNE 221
           S N++S                             SL NLT++ ++  G+N +S   P  
Sbjct: 334 SNNKVSDV--------------------------SSLANLTNINWLSAGHNQISDLTP-- 365

Query: 222 VGNLKSLSDLRLDNNTLSG---------SIPLSLGNLT 250
           + NL  ++ L L++   +          SIP ++ N+T
Sbjct: 366 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 403


>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
          Length = 466

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 106/237 (44%), Gaps = 50/237 (21%)

Query: 116 NQFFGIIPPQIGNLSMLKFLGLSFNQFSG-SIPPEIGYLTHLKLLSFSKNQLSGFIPHEI 174
           NQ   + P  + NL+ L+ L +S N+ S  S+   +  LT+L+ L  + NQ+S   P   
Sbjct: 164 NQVTDLKP--LANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--- 215

Query: 175 GRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLS---DL 231
                                  LG LT+L  + +  N L      ++G L SL+   DL
Sbjct: 216 -----------------------LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDL 247

Query: 232 RLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIP 291
            L NN +S   PLS   LTKL  L L  N +    P  +  L +L++L+L+ N L    P
Sbjct: 248 DLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 303

Query: 292 FSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKL 348
            S  NL NL  L +  N +S   P  + +L  L  L   NN +S     SL NLT +
Sbjct: 304 IS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNI 354



 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 94/203 (46%), Gaps = 44/203 (21%)

Query: 150 IGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDI 209
           + YL +L  ++FS NQL+   P                          L NLT L+ I +
Sbjct: 63  VEYLNNLTQINFSNNQLTDITP--------------------------LKNLTKLVDILM 96

Query: 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYE 269
            NN ++   P  + NL +L+ L L NN ++   PL   NLT L  L L +N +      +
Sbjct: 97  NNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTI-----SD 147

Query: 270 IGNLKSLSDL-QLSY-NTLNGSIPFSLGNLTNLAILYIGINALSG-SIPNEIGNLKSLLD 326
           I  L  L+ L QLS+ N +    P  L NLT L  L I  N +S  S+  ++ NL+SL+ 
Sbjct: 148 ISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLI- 204

Query: 327 LRLDNNTLSGSIPLS-LGNLTKL 348
               NN +S   PL  L NL +L
Sbjct: 205 --ATNNQISDITPLGILTNLDEL 225



 Score = 32.0 bits (71), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 41/158 (25%)

Query: 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161
            +    L  L+L  NQ   I P  I NL  L +L L FN  S   P  +  LT L+ L F
Sbjct: 282 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 337

Query: 162 SKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNE 221
           + N++S                             SL NLT++ ++  G+N +S   P  
Sbjct: 338 ANNKVSDV--------------------------SSLANLTNINWLSAGHNQISDLTP-- 369

Query: 222 VGNLKSLSDLRLDNNTLSG---------SIPLSLGNLT 250
           + NL  ++ L L++   +          SIP ++ N+T
Sbjct: 370 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 407


>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
           Monocytogenes Str. 4b F2365 At 1.91 A Resolution
 pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
           Monocytogenes Str. 4b F2365 At 1.91 A Resolution
          Length = 347

 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 15/204 (7%)

Query: 92  GLKGTLHDFS-FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEI 150
           G    L D S  S+   L YL +  ++   + P  I NL+ L  L L++NQ     P  +
Sbjct: 140 GANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--L 195

Query: 151 GYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIG 210
             LT L   +   NQ++   P  +                    P  L NL+ L +++IG
Sbjct: 196 ASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251

Query: 211 NNLLSGSIPNEVGNLKSLSDLRLDNNTLSG-SIPLSLGNLTKLGTLYLHTNALFGSIPYE 269
            N +S    N V +L  L  L + +N +S  S+   L NL++L +L+L+ N L       
Sbjct: 252 TNQISD--INAVKDLTKLKXLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDXEV 306

Query: 270 IGNLKSLSDLQLSYNTLNGSIPFS 293
           IG L +L+ L LS N +    P +
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRPLA 330



 Score = 33.5 bits (75), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 113/270 (41%), Gaps = 37/270 (13%)

Query: 105 FPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKN 164
             +L YL+L  NQ   I P  + NL  L  L +  N+ +      +  LT+L+ L  +++
Sbjct: 65  LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120

Query: 165 QLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGN 224
            +S   P  +                   + P L N T L Y+ +  + +    P  + N
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDVTP--IAN 175

Query: 225 LKSLSDLRLDNNTLSGSIPLS--------------------LGNLTKLGTLYLHTNALFG 264
           L  L  L L+ N +    PL+                    + N T+L +L +  N +  
Sbjct: 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITD 235

Query: 265 SIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG-SIPNEIGNLKS 323
             P  + NL  L+ L++  N +  S   ++ +LT L  L +G N +S  S+ N +  L S
Sbjct: 236 LSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNS 291

Query: 324 LLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353
           L    L+NN L       +G LT L TL+L
Sbjct: 292 LF---LNNNQLGNEDXEVIGGLTNLTTLFL 318



 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 57/220 (25%)

Query: 150 IGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDI 209
           I YLT+L+ L+ + NQ++   P                          L NL  L  + I
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--------------------------LSNLVKLTNLYI 95

Query: 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLS---------------------LGN 248
           G N ++    + + NL +L +L L+ + +S   PL+                     L N
Sbjct: 96  GTNKITD--ISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSN 153

Query: 249 LTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGIN 308
            T L  L +  + +    P  I NL  L  L L+YN +    P  L +LT+L      +N
Sbjct: 154 XTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209

Query: 309 ALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKL 348
            ++   P  + N   L  L++ NN ++   P  L NL++L
Sbjct: 210 QITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQL 245


>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes)  E-Cadherin (Human)
           Recognition Complex
 pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
 pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
 pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
           Domain, Uncomplexed
          Length = 466

 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 94/203 (46%), Gaps = 44/203 (21%)

Query: 150 IGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDI 209
           + YL +L  ++FS NQL+   P                          L NLT L+ I +
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP--------------------------LKNLTKLVDILM 97

Query: 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYE 269
            NN ++   P  + NL +L+ L L NN ++   PL   NLT L  L L +N +      +
Sbjct: 98  NNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTI-----SD 148

Query: 270 IGNLKSLSDL-QLSY-NTLNGSIPFSLGNLTNLAILYIGINALSG-SIPNEIGNLKSLLD 326
           I  L  L+ L QLS+ N +    P  L NLT L  L I  N +S  S+  ++ NL+SL+ 
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLI- 205

Query: 327 LRLDNNTLSGSIPLS-LGNLTKL 348
               NN +S   PL  L NL +L
Sbjct: 206 --ATNNQISDITPLGILTNLDEL 226



 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 104/236 (44%), Gaps = 48/236 (20%)

Query: 116 NQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIG 175
           NQ   + P  + NL+ L+ L +S N+ S      +  LT+L+ L  + NQ+S   P    
Sbjct: 165 NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP---- 216

Query: 176 RXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLS---DLR 232
                                 LG LT+L  + +  N L      ++G L SL+   DL 
Sbjct: 217 ----------------------LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDLD 249

Query: 233 LDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF 292
           L NN +S   PLS   LTKL  L L  N +    P  +  L +L++L+L+ N L    P 
Sbjct: 250 LANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 305

Query: 293 SLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKL 348
           S  NL NL  L +  N +S   P  + +L  L  L   NN +S     SL NLT +
Sbjct: 306 S--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNI 355



 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 41/158 (25%)

Query: 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161
            +    L  L+L  NQ   I P  I NL  L +L L FN  S   P  +  LT L+ L F
Sbjct: 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338

Query: 162 SKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNE 221
             N++S                             SL NLT++ ++  G+N +S   P  
Sbjct: 339 YNNKVSDV--------------------------SSLANLTNINWLSAGHNQISDLTP-- 370

Query: 222 VGNLKSLSDLRLDNNTLSG---------SIPLSLGNLT 250
           + NL  ++ L L++   +          SIP ++ N+T
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408


>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
          Length = 461

 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 104/236 (44%), Gaps = 48/236 (20%)

Query: 116 NQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIG 175
           NQ   + P  + NL+ L+ L +S N+ S      +  LT+L+ L  + NQ+S   P    
Sbjct: 160 NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP---- 211

Query: 176 RXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLS---DLR 232
                                 LG LT+L  + +  N L      ++G L SL+   DL 
Sbjct: 212 ----------------------LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDLD 244

Query: 233 LDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF 292
           L NN +S   PLS   LTKL  L L  N +    P  +  L +L++L+L+ N L    P 
Sbjct: 245 LANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 300

Query: 293 SLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKL 348
           S  NL NL  L +  N +S   P  + +L  L  L   NN +S     SL NLT +
Sbjct: 301 S--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNI 350



 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 97/243 (39%), Gaps = 73/243 (30%)

Query: 150 IGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDI 209
           + YL +L  ++FS NQL+   P                          L NLT L+ I +
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--------------------------LKNLTKLVDILM 92

Query: 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNAL------- 262
            NN ++   P  + NL +L+ L L NN ++   PL   NLT L  L L +N +       
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALS 148

Query: 263 ---------FGSIPYE---IGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINAL 310
                    FG+   +   + NL +L  L +S N +  S    L  LTNL  L    N +
Sbjct: 149 GLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQI 206

Query: 311 SGSIP-----------------NEIGNLKS---LLDLRLDNNTLSGSIPLSLGNLTKLVT 350
           S   P                  +IG L S   L DL L NN +S   PLS   LTKL  
Sbjct: 207 SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTE 264

Query: 351 LYL 353
           L L
Sbjct: 265 LKL 267



 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 41/158 (25%)

Query: 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161
            +    L  L+L  NQ   I P  I NL  L +L L FN  S   P  +  LT L+ L F
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 333

Query: 162 SKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNE 221
             N++S                             SL NLT++ ++  G+N +S   P  
Sbjct: 334 YNNKVSDV--------------------------SSLANLTNINWLSAGHNQISDLTP-- 365

Query: 222 VGNLKSLSDLRLDNNTLSG---------SIPLSLGNLT 250
           + NL  ++ L L++   +          SIP ++ N+T
Sbjct: 366 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 403


>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
 pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
 pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
          Length = 329

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 110/290 (37%), Gaps = 43/290 (14%)

Query: 67  ISPCTWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQI 126
           + P   F   C+    +  +  +  GL+    D      P    LDL+ N+   I     
Sbjct: 21  MGPVCPFRCQCH----LRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDF 72

Query: 127 GNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXX-XXXXX 185
            NL  L  L L  N+ S   P     L  L+ L  SKNQL   +P ++ +          
Sbjct: 73  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHEN 131

Query: 186 XXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGS-IPN-EVGNLKSLSDLRLDNNTLSGSIP 243
                + S+      L  +I +++G N L  S I N     +K LS +R+ +  ++ +IP
Sbjct: 132 EITKVRKSV---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP 187

Query: 244 LSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAIL 303
             L                            SL++L L  N +      SL  L NLA L
Sbjct: 188 QGLP--------------------------PSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 304 YIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353
            +  N++S      + N   L +L L+NN L   +P  L +   +  +YL
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270


>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
           The Archetypal Small Leucine-Rich Repeat Proteoglycan
          Length = 330

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 110/290 (37%), Gaps = 43/290 (14%)

Query: 67  ISPCTWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQI 126
           + P   F   C+    +  +  +  GL+    D      P    LDL+ N+   I     
Sbjct: 21  MGPVCPFRCQCH----LRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDF 72

Query: 127 GNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXX-XXXXX 185
            NL  L  L L  N+ S   P     L  L+ L  SKNQL   +P ++ +          
Sbjct: 73  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHEN 131

Query: 186 XXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGS-IPN-EVGNLKSLSDLRLDNNTLSGSIP 243
                + S+      L  +I +++G N L  S I N     +K LS +R+ +  ++ +IP
Sbjct: 132 EITKVRKSV---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP 187

Query: 244 LSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAIL 303
             L                            SL++L L  N +      SL  L NLA L
Sbjct: 188 QGLP--------------------------PSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 304 YIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353
            +  N++S      + N   L +L L+NN L   +P  L +   +  +YL
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270


>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
 pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
          Length = 193

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 46/93 (49%)

Query: 218 IPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLS 277
           +P E+ N K L+ + L NN +S     S  N+T+L TL L  N L    P     LKSL 
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105

Query: 278 DLQLSYNTLNGSIPFSLGNLTNLAILYIGINAL 310
            L L  N ++     +  +L+ L+ L IG N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138



 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 255 LYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSI 314
           LYL  N  F  +P E+ N K L+ + LS N ++     S  N+T L  L +  N L    
Sbjct: 36  LYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 315 PNEIGNLKSLLDLRLDNNTLS 335
           P     LKSL  L L  N +S
Sbjct: 95  PRTFDGLKSLRLLSLHGNDIS 115



 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 35/76 (46%)

Query: 92  GLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIG 151
           G + TL     S++ HL  +DL  N+   +      N++ L  L LS+N+     P    
Sbjct: 40  GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99

Query: 152 YLTHLKLLSFSKNQLS 167
            L  L+LLS   N +S
Sbjct: 100 GLKSLRLLSLHGNDIS 115



 Score = 28.1 bits (61), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 30/144 (20%)

Query: 135 LGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSI 194
           L L  NQF+  +P E+    HL L+  S N++S                           
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQ---------------------- 72

Query: 195 PPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGT 254
             S  N+T L+ + +  N L    P     LKSL  L L  N +S     +  +L+ L  
Sbjct: 73  --SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130

Query: 255 LYLHTNALFGSIPYEIGNLKSLSD 278
           L +  N L+        N++ LSD
Sbjct: 131 LAIGANPLYCDC-----NMQWLSD 149


>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 520

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 32/188 (17%)

Query: 134 FLGLSF--NQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXK 191
           FL L F  N  + ++    G+LT L+ L    NQL                         
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL---------------------- 363

Query: 192 GSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNL---KSLSDLRLDNNTLSGSIPLSLGN 248
             I      + SL  +DI  N  S S   + G+    KSL  L + +N L+ +I   L  
Sbjct: 364 SKIAEMTTQMKSLQQLDISQN--SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP- 420

Query: 249 LTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGIN 308
             ++  L LH+N +  SIP ++  L++L +L ++ N L          LT+L  +++  N
Sbjct: 421 -PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

Query: 309 ALSGSIPN 316
               S P 
Sbjct: 479 PWDCSCPR 486



 Score = 33.9 bits (76), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 6/158 (3%)

Query: 199 GNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLS--GSIPLSLGNLTKLGTLY 256
             ++  +++D  NNLL+ ++    G+L  L  L L  N L     I      +  L  L 
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 257 LHTNAL-FGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIP 315
           +  N++ +     +    KSL  L +S N L  +I   L     + +L +  N +  SIP
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIP 437

Query: 316 NEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353
            ++  L++L +L + +N L          LT L  ++L
Sbjct: 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475



 Score = 33.1 bits (74), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 108 LGYLDLRINQFFGI-IPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLL 159
           L +LDL  N F  + I  + GN+S LKFLGLS      S    I +L   K+L
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144


>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
           Domain Reveals A Convergent Recognition Scaffold
           Mediating Inhibition Of Myelination
          Length = 285

 Score = 37.7 bits (86), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 48/114 (42%)

Query: 219 PNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSD 278
           P     L +L  L L +N L      +  +L  L  L+LH N +          L SL  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 279 LQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNN 332
           L L  N +    P +  +L  L  LY+  N LS      +  L++L  LRL++N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235


>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
          Length = 285

 Score = 37.7 bits (86), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 48/114 (42%)

Query: 219 PNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSD 278
           P     L +L  L L +N L      +  +L  L  L+LH N +          L SL  
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180

Query: 279 LQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNN 332
           L L  N +    P +  +L  L  LY+  N LS      +  L++L  LRL++N
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234


>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R5.1
 pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R5.1
          Length = 251

 Score = 37.4 bits (85), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 11/131 (8%)

Query: 201 LTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTKLGTLYLHT 259
           LT L ++++  N L         +L  L  L L NN L+ S+PL +  +LT+L  LYL  
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116

Query: 260 NALFGSIPYEI-GNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINALSGSIP-- 315
           N L  S+P  +   L  L +L+L+ N L  SIP  +   LTNL  L +  N L  S+P  
Sbjct: 117 NQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173

Query: 316 --NEIGNLKSL 324
             + +G L+++
Sbjct: 174 AFDRLGKLQTI 184



 Score = 34.7 bits (78), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 58/201 (28%)

Query: 83  VNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQF 142
              ++L S GL  TL D +F     L +L+L  NQ   +      +L+ L  LGL+ NQ 
Sbjct: 37  TEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95

Query: 143 SGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLT 202
           + S+P  +G   HL                                             T
Sbjct: 96  A-SLP--LGVFDHL---------------------------------------------T 107

Query: 203 SLIYIDIGNNLLSGSIPNEV-GNLKSLSDLRLDNNTLSGSIPL-SLGNLTKLGTLYLHTN 260
            L  + +G N L  S+P+ V   L  L +LRL+ N L  SIP  +   LT L TL L TN
Sbjct: 108 QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTN 165

Query: 261 ALFGSIPY----EIGNLKSLS 277
            L  S+P+     +G L++++
Sbjct: 166 QL-QSVPHGAFDRLGKLQTIT 185



 Score = 31.6 bits (70), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 249 LTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSL-GNLTNLAILYIGI 307
           LTKL  L L  N L         +L  L  L L+ N L  S+P  +  +LT L  LY+G 
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116

Query: 308 NALSGSIPNEI-GNLKSLLDLRLDNNTLSGSIPL-SLGNLTKLVTLYL 353
           N L  S+P+ +   L  L +LRL+ N L  SIP  +   LT L TL L
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSL 162


>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
           Vlra.R2.1 In Complex With Hen Egg Lysozyme
          Length = 251

 Score = 37.0 bits (84), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 11/131 (8%)

Query: 201 LTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTKLGTLYLHT 259
           LT L ++++  N L         +L  L  L L NN L+ S+PL +  +LT+L  LYL  
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116

Query: 260 NALFGSIPYEI-GNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINALSGSIP-- 315
           N L  S+P  +   L  L +L+L+ N L  SIP  +   LTNL  L +  N L  S+P  
Sbjct: 117 NQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173

Query: 316 --NEIGNLKSL 324
             + +G L+++
Sbjct: 174 AFDRLGKLQTI 184



 Score = 34.7 bits (78), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 58/201 (28%)

Query: 83  VNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQF 142
              ++L S GL  TL D +F     L +L+L  NQ   +      +L+ L  LGL+ NQ 
Sbjct: 37  TEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95

Query: 143 SGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLT 202
           + S+P  +G   HL                                             T
Sbjct: 96  A-SLP--LGVFDHL---------------------------------------------T 107

Query: 203 SLIYIDIGNNLLSGSIPNEV-GNLKSLSDLRLDNNTLSGSIPL-SLGNLTKLGTLYLHTN 260
            L  + +G N L  S+P+ V   L  L +LRL+ N L  SIP  +   LT L TL L TN
Sbjct: 108 QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTN 165

Query: 261 ALFGSIPY----EIGNLKSLS 277
            L  S+P+     +G L++++
Sbjct: 166 QL-QSVPHGAFDRLGKLQTIT 185



 Score = 31.6 bits (70), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 249 LTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSL-GNLTNLAILYIGI 307
           LTKL  L L  N L         +L  L  L L+ N L  S+P  +  +LT L  LY+G 
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116

Query: 308 NALSGSIPNEI-GNLKSLLDLRLDNNTLSGSIPL-SLGNLTKLVTLYL 353
           N L  S+P+ +   L  L +LRL+ N L  SIP  +   LT L TL L
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSL 162


>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
           Listeria Monocytogenes Str. 4b F2365 At 1.90 A
           Resolution
 pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
           Listeria Monocytogenes Str. 4b F2365 At 1.90 A
           Resolution
          Length = 231

 Score = 37.0 bits (84), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 201 LTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTN 260
           L +LI +++ +N ++   P  + NL  +++L L  N L      ++  L  + TL L + 
Sbjct: 68  LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST 123

Query: 261 ALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFS-LGNLTNLAILYIGINALSGSIPNEIG 319
            +    P     L  LS+LQ+ Y  LN     S L  LTNL  L IG N ++   P  + 
Sbjct: 124 QITDVTP-----LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTP--LA 176

Query: 320 NLKSLLDLRLDNNTLSGSIPL-SLGNLTKL 348
           NL  L  LR D+N +S   PL SL NL ++
Sbjct: 177 NLSKLTTLRADDNKISDISPLASLPNLIEV 206



 Score = 35.4 bits (80), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 31/128 (24%)

Query: 126 IGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXX 185
           I  L  +K L L+  Q +   P  +  L++L++L    NQ++   P              
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-------------- 152

Query: 186 XXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPL- 244
                       L  LT+L Y+ IGNN ++   P  + NL  L+ LR D+N +S   PL 
Sbjct: 153 ------------LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISPLA 198

Query: 245 SLGNLTKL 252
           SL NL ++
Sbjct: 199 SLPNLIEV 206


>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
          Length = 727

 Score = 37.0 bits (84), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 11/112 (9%)

Query: 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYE 269
           GN+L    +P E+ NL +L  L L +N L+ S+P  LG+  +L   Y   N +  ++P+E
Sbjct: 256 GNSL--TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MVTTLPWE 311

Query: 270 IGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLA----ILYIGINALSGSIPNE 317
            GNL +L  L +  N L       L  LT  +    I Y+  N     +P+E
Sbjct: 312 FGNLCNLQFLGVEGNPLEKQF---LKILTEKSVTGLIFYLRDNRPEIPLPHE 360



 Score = 32.0 bits (71), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 29/169 (17%)

Query: 145 SIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSL 204
            +P EI  L++L++L  S N+L+                         S+P  LG+   L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-------------------------SLPAELGSCFQL 295

Query: 205 IYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLG-TLYLHTNALF 263
            Y    +N+++ ++P E GNL +L  L ++ N L       L   +  G   YL  N   
Sbjct: 296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354

Query: 264 GSIPYEIGNLKSLSD--LQLSYNTLNGSIPFSLGNLTNLAILYIGINAL 310
             +P+E   ++  +D   Q  Y++L  S      +L       +  N L
Sbjct: 355 IPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403


>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
           Antibody
 pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
           Antibody
          Length = 286

 Score = 35.8 bits (81), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 91/234 (38%), Gaps = 51/234 (21%)

Query: 101 SFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFN-QFSGSIPPEIGYLTHLKLL 159
           SF S  +L  L L  N   GI       L++L+ L LS N Q     P     L HL  L
Sbjct: 50  SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109

Query: 160 SFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIP 219
              +  L      E+G                   P     L +L Y+ + +N       
Sbjct: 110 HLDRCGLQ-----ELG-------------------PGLFRGLAALQYLYLQDN------- 138

Query: 220 NEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDL 279
               NL++L D     NT        LGNLT L   +LH N +     +    L SL  L
Sbjct: 139 ----NLQALPD-----NTFR-----DLGNLTHL---FLHGNRIPSVPEHAFRGLHSLDRL 181

Query: 280 QLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEI-GNLKSLLDLRLDNN 332
            L  N +    P +  +L  L  LY+  N LS  +P E+   L+SL  LRL++N
Sbjct: 182 LLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDN 234



 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 233 LDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNT-LNGSIP 291
           L  N +S     S  +   L  L+LH+NAL G        L  L  L LS N  L    P
Sbjct: 38  LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97

Query: 292 FSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIP----LSLGNLTK 347
            +   L +L  L++    L    P     L +L  L L +N L  ++P      LGNLT 
Sbjct: 98  TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTH 156

Query: 348 L 348
           L
Sbjct: 157 L 157


>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
          Length = 570

 Score = 35.0 bits (79), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 113/277 (40%), Gaps = 41/277 (14%)

Query: 83  VNSINLTSAGLKGTLHDFSFS-SFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQ 141
           V+S +L S  ++  + DFS++  + HL  ++ +  QF     P +  L  LK L  + N+
Sbjct: 284 VSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQF-----PTL-KLKSLKRLTFTSNK 336

Query: 142 FSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNL 201
             G+   E+  L  L+ L  S+N LS                       KG    S    
Sbjct: 337 -GGNAFSEVD-LPSLEFLDLSRNGLS----------------------FKGCCSQSDFGT 372

Query: 202 TSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG----SIPLSLGNLTKLGTLYL 257
           TSL Y+D+  N +     N +G L+ L  L   ++ L      S+ LSL NL  L   + 
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 258 HTNALFGSIPYEIGNLKSLSDLQLSYNTLNGS-IPFSLGNLTNLAILYIGINALSGSIPN 316
           HT   F  I      L SL  L+++ N+   + +P     L NL  L +    L    P 
Sbjct: 432 HTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 317 EIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353
              +L SL  L + +N L          LT L  ++L
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525


>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
           Domains
          Length = 308

 Score = 35.0 bits (79), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 13/150 (8%)

Query: 201 LTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTN 260
           L +LI +++ +N ++   P  + NL  +++L L  N L      ++  L  + TL L + 
Sbjct: 62  LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117

Query: 261 ALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFS-LGNLTNLAILYIGINALSGSIPNEIG 319
            +    P     L  LS+LQ+ Y  LN     S L  LTNL  L IG   +S   P  + 
Sbjct: 118 QITDVTP-----LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LA 170

Query: 320 NLKSLLDLRLDNNTLSGSIPL-SLGNLTKL 348
           NL  L  L+ D+N +S   PL SL NL ++
Sbjct: 171 NLSKLTTLKADDNKISDISPLASLPNLIEV 200



 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 12/145 (8%)

Query: 198 LGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYL 257
           L NLT +  +++  N L     + +  L+S+  L L +  ++   PL+   L+ L  LYL
Sbjct: 81  LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYL 136

Query: 258 HTNALFGSIPYEIGNLKSLSDLQ-LSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPN 316
             N +       I  L  L++LQ LS      S    L NL+ L  L    N +S   P 
Sbjct: 137 DLNQI-----TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 317 EIGNLKSLLDLRLDNNTLSGSIPLS 341
            + +L +L+++ L NN +S   PL+
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSPLA 214


>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors B59
 pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors B59
          Length = 208

 Score = 35.0 bits (79), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 200 NLTSLIYIDIGNNLLSGSIPNEVGN-LKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLH 258
            LTSL  + +G N L  S+PN V N L SL+ L L  N L          LT+L  L L+
Sbjct: 50  ELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108

Query: 259 TNALFGSIPYEI-GNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIP 315
           TN L  S+P  +   L  L DL+L  N L          LT+L  +++  N    + P
Sbjct: 109 TNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165



 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 231 LRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGN-LKSLSDLQLSYNTLNGS 289
           L L+ N+L          LT L  LYL  N L  S+P  + N L SL+ L LS N L   
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 290 IPFSLGNLTNLAILYIGINALSGSIPNEI-GNLKSLLDLRLDNNTLSGSIPLSLGNLTKL 348
                  LT L  L +  N L  S+P+ +   L  L DLRL  N L          LT L
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

Query: 349 VTLYL 353
             ++L
Sbjct: 151 QYIWL 155



 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEI-GYLTHLKLLS 160
           F+    L YL+L  NQ   +       L+ LK L L+ NQ   S+P  +   LT LK L 
Sbjct: 72  FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLR 130

Query: 161 FSKNQL 166
             +NQL
Sbjct: 131 LYQNQL 136


>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
          Length = 477

 Score = 34.7 bits (78), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 121/298 (40%), Gaps = 58/298 (19%)

Query: 96  TLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGY-LT 154
           TL+   F+SFPHL  L+L  N    + P    NL  L+ LGL  N+    IP  +   L+
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS 104

Query: 155 HLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNNLL 214
           +L  L  S+N++   + +                        +   L SL  + +    L
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164

Query: 215 SGSIPNE-VGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTL------YLHT---NALFG 264
           + SIP E + +L  L  LRL +  ++     S   L +L  L      YL T   N L+G
Sbjct: 165 T-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 265 --------------SIPY-EIGNLKSLSDLQLSYN---TLNGSI---------------- 290
                         ++PY  + +L  L  L LSYN   T+ GS+                
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283

Query: 291 -----PFSLGNLTNLAILYIGINALS---GSIPNEIGNLKSLLDLRLDNNTLSGSIPL 340
                P++   L  L +L +  N L+    S+ + +GNL++L+   LD+N L+    L
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI---LDSNPLACDCRL 338


>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
 pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
           Receptors Of Jawless Vertebrates By Module Engineering
          Length = 272

 Score = 34.7 bits (78), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 8/166 (4%)

Query: 105 FPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEI-GYLTHLKLLSFSK 163
            P++ YL L  N+   I    +  L+ L +L L+ NQ   S+P  +   LT+LK L   +
Sbjct: 62  LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118

Query: 164 NQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSL-GNLTSLIYIDIGNNLLSGSIPNEV 222
           NQL   +P  +                  S+P  +   LT+L  +D+  N L  S+P  V
Sbjct: 119 NQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGV 176

Query: 223 -GNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIP 267
              L  L DLRL  N L          LT L  ++LH N    + P
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222



 Score = 31.2 bits (69), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 96  TLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEI-GYLT 154
           +L D  F    +L YL+L  NQ   +       L+ L  L LS+NQ   S+P  +   LT
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLT 181

Query: 155 HLKLLSFSKNQLS 167
            LK L   +NQL 
Sbjct: 182 QLKDLRLYQNQLK 194



 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 65/146 (44%), Gaps = 9/146 (6%)

Query: 197 SLGNLTSLIYIDIGNNLLSGSIPNEV-GNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTL 255
            L NLT LI    GN L   S+PN V   L +L +L L  N L          LT L  L
Sbjct: 83  ELTNLTYLIL--TGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138

Query: 256 YLHTNALFGSIPYEI-GNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSI 314
            L  N L  S+P  +   L +L++L LSYN L          LT L  L +  N L  S+
Sbjct: 139 NLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SV 196

Query: 315 PNEI-GNLKSLLDLRLDNNTLSGSIP 339
           P+ +   L SL  + L +N    + P
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCP 222


>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
          Length = 192

 Score = 34.7 bits (78), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 198 LGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG-SIPLSLGNLTKLGTLY 256
            G L  L+ +++  N L+G  PN       + +L+L  N +   S  + LG L +L TL 
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG-LHQLKTLN 108

Query: 257 LHTNALFGSIPYEIGNLKSLSDLQLSYNTLN 287
           L+ N +   +P    +L SL+ L L+ N  N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139



 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 31/70 (44%)

Query: 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161
           F   PHL  L+L+ NQ  GI P      S ++ L L  N+           L  LK L+ 
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109

Query: 162 SKNQLSGFIP 171
             NQ+S  +P
Sbjct: 110 YDNQISCVMP 119


>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors B61
          Length = 177

 Score = 33.5 bits (75), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 202 TSLIYIDIGNNLLSGSIPNEV-GNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTN 260
           +S   +++ +N L  S+P+ V   L  L+ L L  N +          LTKL  LYLH N
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86

Query: 261 ALFGSIPYEI-GNLKSLSDLQLSYNTLNGSIPFSL-GNLTNLAILYIGINALSGSIPN 316
            L  S+P  +   L  L +L L  N L  S+P  +   LT+L  +++  N    S P 
Sbjct: 87  KL-QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142



 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 255 LYLHTNALFGSIPYEI-GNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGS 313
           L L +N L  S+P+ +   L  L+ L LS N +          LT L ILY+  N L  S
Sbjct: 33  LELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-S 90

Query: 314 IPNEI-GNLKSLLDLRLDNNTLSGSIPLSL-GNLTKLVTLYL 353
           +PN +   L  L +L LD N L  S+P  +   LT L  ++L
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 131



 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 200 NLTSLIYIDIGNNLLSGSIPNEV-GNLKSLSDLRLDNNTLSGSIPLSL-GNLTKLGTLYL 257
            LT L  + +  N L  S+PN V   L  L +L LD N L  S+P  +   LT L  ++L
Sbjct: 74  KLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 131

Query: 258 HTNALFGSIP 267
           HTN    S P
Sbjct: 132 HTNPWDCSCP 141


>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           Of Netrin-G Ligand-3
 pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           Of Netrin-G Ligand-3
          Length = 321

 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 88/228 (38%), Gaps = 53/228 (23%)

Query: 133 KFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKG 192
           ++L L  N           +L HL++L  SKN +      E+G                 
Sbjct: 38  RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI---EVG----------------- 77

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIP--------- 243
               +   L SL  +++ +N L+         L  L +L L NN +  SIP         
Sbjct: 78  ----AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPS 132

Query: 244 ---LSLGNLTKLGTLYLHTNALFGSIPYE-----IGNLKS---------LSDLQLSYNTL 286
              L LG L +L   Y+   A  G +        + NLK          L +L+LS N L
Sbjct: 133 LRRLDLGELKRLE--YISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRL 190

Query: 287 NGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTL 334
           +   P S   LT+L  L++    ++    N   +LKSL +L L +N L
Sbjct: 191 DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238



 Score = 32.3 bits (72), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 75/196 (38%), Gaps = 6/196 (3%)

Query: 101 SFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160
           +F    HL  L L  N    I       L  L  L L  N+ +        YL+ L+ L 
Sbjct: 54  TFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELW 113

Query: 161 FSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSI-PPSLGNLTSLIYIDIGNNLLSGSIP 219
              N +     +   R                 I   +   L +L Y+++G   L   IP
Sbjct: 114 LRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIP 172

Query: 220 NEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPY-EIGNLKSLSD 278
           N +  L  L +L L  N L    P S   LT L  L+L  +A   +I      +LKSL +
Sbjct: 173 N-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL-MHAQVATIERNAFDDLKSLEE 230

Query: 279 LQLSYNTLNGSIPFSL 294
           L LS+N L  S+P  L
Sbjct: 231 LNLSHNNL-MSLPHDL 245


>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
           Rbc36 In Complex With H-Trisaccharide
          Length = 229

 Score = 32.7 bits (73), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 215 SGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLK 274
           S + P++     +  D R   +    S+P   G  T    LYLH N +    P    +L 
Sbjct: 10  SAACPSQCSCSGTTVDCRSKRH---ASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLI 64

Query: 275 SLSDLQLSYNTLNGSIPFSL-GNLTNLAILYIGINALSGSIPNEI-GNLKSLLDLRLDNN 332
           +L +L L  N L G++P  +  +LT L +L +G N L+  +P+ +   L  L +L +  N
Sbjct: 65  NLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCN 122

Query: 333 TLSGSIPLSLGNLTKLVTLYL 353
            L+  +P  +  LT L  L L
Sbjct: 123 KLT-ELPRGIERLTHLTHLAL 142


>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
           An Electron Microscopy Single Particle Reconstruction
 pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
           An Electron Microscopy Single Particle Reconstruction
          Length = 844

 Score = 32.7 bits (73), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 29/157 (18%)

Query: 96  TLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTH 155
           T+   +F + P+L  LDL  ++ + + P     L  L  L L F   S ++  + GY  +
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRN 121

Query: 156 LKLLS---FSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNLTSLIYIDIGNN 212
           LK L+    SKNQ+     H                       PS G L SL  ID  +N
Sbjct: 122 LKALTRLDLSKNQIRSLYLH-----------------------PSFGKLNSLKSIDFSSN 158

Query: 213 LLSGSIPNEVGNL--KSLSDLRLDNNTLSGSIPLSLG 247
            +     +E+  L  K+LS   L  N+L   + +  G
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195


>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 32.3 bits (72), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 18/137 (13%)

Query: 217 SIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSL 276
            +P+       L  L L  N L  ++P S+ +L +L  L +        +P  + +  + 
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 277 SDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSG 336
            + Q             L NL +L + + GI     S+P  I NL++L  L++ N+ LS 
Sbjct: 177 GEHQ------------GLVNLQSLRLEWTGIR----SLPASIANLQNLKSLKIRNSPLSA 220

Query: 337 SIPLSLGNLTKLVTLYL 353
             P ++ +L KL  L L
Sbjct: 221 LGP-AIHHLPKLEELDL 236


>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           And Immunoglobulin Domain Of Netrin-G Ligand-3
          Length = 411

 Score = 32.3 bits (72), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 88/228 (38%), Gaps = 53/228 (23%)

Query: 133 KFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKG 192
           ++L L  N           +L HL++L  SKN +      E+G                 
Sbjct: 38  RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI---EVG----------------- 77

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIP--------- 243
               +   L SL  +++ +N L+         L  L +L L NN +  SIP         
Sbjct: 78  ----AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPS 132

Query: 244 ---LSLGNLTKLGTLYLHTNALFGSIPYE-----IGNLKS---------LSDLQLSYNTL 286
              L LG L +L   Y+   A  G +        + NLK          L +L+LS N L
Sbjct: 133 LRRLDLGELKRLE--YISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRL 190

Query: 287 NGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTL 334
           +   P S   LT+L  L++    ++    N   +LKSL +L L +N L
Sbjct: 191 DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238



 Score = 31.6 bits (70), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 75/196 (38%), Gaps = 6/196 (3%)

Query: 101 SFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160
           +F    HL  L L  N    I       L  L  L L  N+ +        YL+ L+ L 
Sbjct: 54  TFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELW 113

Query: 161 FSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSI-PPSLGNLTSLIYIDIGNNLLSGSIP 219
              N +     +   R                 I   +   L +L Y+++G   L   IP
Sbjct: 114 LRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIP 172

Query: 220 NEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPY-EIGNLKSLSD 278
           N +  L  L +L L  N L    P S   LT L  L+L  +A   +I      +LKSL +
Sbjct: 173 N-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL-MHAQVATIERNAFDDLKSLEE 230

Query: 279 LQLSYNTLNGSIPFSL 294
           L LS+N L  S+P  L
Sbjct: 231 LNLSHNNL-MSLPHDL 245


>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
           Ra Complex
 pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
           Ra Complex
          Length = 605

 Score = 32.3 bits (72), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 106/256 (41%), Gaps = 41/256 (16%)

Query: 83  VNSINLTSAGLKGTLHDFSFS-SFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQ 141
           V+S +L S  ++  + DFS++  + HL  ++ +  QF     P +  L  LK L  + N+
Sbjct: 284 VSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQF-----PTL-KLKSLKRLTFTSNK 336

Query: 142 FSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNL 201
             G+   E+  L  L+ L  S+N LS                       KG    S    
Sbjct: 337 -GGNAFSEVD-LPSLEFLDLSRNGLS----------------------FKGCCSQSDFGT 372

Query: 202 TSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG----SIPLSLGNLTKLGTLYL 257
           TSL Y+D+  N +     N +G L+ L  L   ++ L      S+ LSL NL  L   + 
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 258 HTNALFGSIPYEIGNLKSLSDLQLSYNTLNGS-IPFSLGNLTNLAILYIGINALSGSIPN 316
           HT   F  I      L SL  L+++ N+   + +P     L NL  L +    L    P 
Sbjct: 432 HTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 317 EIGNLKSLLDLRLDNN 332
              +L SL  L + +N
Sbjct: 489 AFNSLSSLQVLNMSHN 504


>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
 pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
 pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
 pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
          Length = 306

 Score = 32.3 bits (72), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 9/147 (6%)

Query: 191 KGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG----SIPLSL 246
           KG    S    TSL Y+D+  N +     N +G L+ L  L   ++ L      S+ LSL
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 247 GNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGS-IPFSLGNLTNLAILYI 305
            NL  L   + HT   F  I      L SL  L+++ N+   + +P     L NL  L +
Sbjct: 126 RNLIYLDISHTHTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 306 GINALSGSIPNEIGNLKSLLDLRLDNN 332
               L    P    +L SL  L + +N
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHN 209


>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
 pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
          Length = 332

 Score = 32.0 bits (71), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 225 LKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTN 260
           L +L +L LDNN LS  +P  L +L  L  +YLHTN
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274



 Score = 31.2 bits (69), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 9/152 (5%)

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKL 252
           ++P  +   T+L+  D+ NN +S    ++   L+ L  L L NN +S     +   L KL
Sbjct: 47  AVPKEISPDTTLL--DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104

Query: 253 GTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINAL-- 310
             LY+  N L   IP  + +  SL +L++  N +          L N+  + +G N L  
Sbjct: 105 QKLYISKNHLV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 311 SGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSL 342
           SG  P     LK L  LR+    L+G IP  L
Sbjct: 162 SGFEPGAFDGLK-LNYLRISEAKLTG-IPKDL 191


>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
           And T399i In Complex With Md-2 And Lps
 pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
           And T399i In Complex With Md-2 And Lps
          Length = 635

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 105/256 (41%), Gaps = 41/256 (16%)

Query: 83  VNSINLTSAGLKGTLHDFSFS-SFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQ 141
           V+S +L S  ++  + DFS++  + HL  ++ +  QF     P +  L  LK L  + N+
Sbjct: 308 VSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQF-----PTL-KLKSLKRLTFTSNK 360

Query: 142 FSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSLGNL 201
             G+   E+  L  L+ L  S+N LS                       KG    S    
Sbjct: 361 -GGNAFSEVD-LPSLEFLDLSRNGLS----------------------FKGCCSQSDFGT 396

Query: 202 TSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG----SIPLSLGNLTKLGTLYL 257
            SL Y+D+  N +     N +G L+ L  L   ++ L      S+ LSL NL  L   + 
Sbjct: 397 ISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455

Query: 258 HTNALFGSIPYEIGNLKSLSDLQLSYNTLNGS-IPFSLGNLTNLAILYIGINALSGSIPN 316
           HT   F  I      L SL  L+++ N+   + +P     L NL  L +    L    P 
Sbjct: 456 HTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512

Query: 317 EIGNLKSLLDLRLDNN 332
              +L SL  L + +N
Sbjct: 513 AFNSLSSLQVLNMSHN 528


>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
          Length = 562

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 207 IDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSI 266
           +D+ NN +  SIP +V +L++L +L + +N L          LT L  ++LH N    + 
Sbjct: 455 LDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513

Query: 267 P 267
           P
Sbjct: 514 P 514



 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 97  LHDFSFSSFPHLGYLDLRINQFFGIIP--PQIGNLSMLKFLGLSFNQF 142
           L + S      L +LDL  N F  ++P   + GNL+ L FLGLS  +F
Sbjct: 112 LQNISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKF 158


>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
           Peptide Inhibitor
          Length = 269

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTK 251
           ++PP L   T+++++    NLL       +     L+ L LD   L+    L + G L  
Sbjct: 24  ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPV 78

Query: 252 LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINAL 310
           LGTL L  N L  S+P     L +L+ L +S+N L  S+P  +L  L  L  LY+  N L
Sbjct: 79  LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 311 SGSIPNEIGNLKSLLDLRLDNNTLS 335
               P  +     L  L L NN L+
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLT 161


>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
 pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
          Length = 606

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 1/132 (0%)

Query: 97  LHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHL 156
           L  +SFS+F  L +LDL   +   I       L  L  L L+ N      P     LT L
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

Query: 157 KLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGS-IPPSLGNLTSLIYIDIGNNLLS 215
           + L   + +L+      IG+                  +P    NLT+L+++D+  N + 
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 216 GSIPNEVGNLKS 227
               N++  L+ 
Sbjct: 167 TITVNDLQFLRE 178


>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
           Botrocetin Complex
          Length = 265

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTK 251
           ++PP L   T+++++    NLL       +     L+ L LD   L+    L + G L  
Sbjct: 24  ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPV 78

Query: 252 LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINAL 310
           LGTL L  N L  S+P     L +L+ L +S+N L  S+P  +L  L  L  LY+  N L
Sbjct: 79  LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 311 SGSIPNEIGNLKSLLDLRLDNNTLS 335
               P  +     L  L L NN L+
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLT 161


>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
           From Bacteroides Eggerthii Dsm 20697 At 2.70 A
           Resolution
 pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
           From Bacteroides Eggerthii Dsm 20697 At 2.70 A
           Resolution
          Length = 636

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 101 SFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEI-GYLTHLKLL 159
           S      LG L+   NQ  G +P   G+   L  L L++NQ +  IP    G+   ++ L
Sbjct: 325 SLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382

Query: 160 SFSKNQLSGFIPH 172
           SF+ N+L  +IP+
Sbjct: 383 SFAHNKLK-YIPN 394


>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
          Length = 599

 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 1/132 (0%)

Query: 97  LHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHL 156
           L  +SFS+F  L +LDL   +   I       L  L  L L+ N      P     LT L
Sbjct: 42  LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 101

Query: 157 KLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGS-IPPSLGNLTSLIYIDIGNNLLS 215
           + L   + +L+      IG+                  +P    NLT+L+++D+  N + 
Sbjct: 102 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161

Query: 216 GSIPNEVGNLKS 227
               N++  L+ 
Sbjct: 162 TITVNDLQFLRE 173


>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
           Domain Of Glycoprotein Ib Alpha
 pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
           Domain Of Glycoprotein Ib Alpha
          Length = 290

 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTK 251
           ++PP L   T+++++    NLL       +     L+ L LD   L+    L + G L  
Sbjct: 24  ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPV 78

Query: 252 LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINAL 310
           LGTL L  N L  S+P     L +L+ L +S+N L  S+P  +L  L  L  LY+  N L
Sbjct: 79  LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 311 SGSIPNEIGNLKSLLDLRLDNNTLS 335
               P  +     L  L L NN L+
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLT 161


>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
           And The Von Willebrand Factor A1 Domain
          Length = 290

 Score = 28.5 bits (62), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTK 251
           ++PP L   T+++++    NLL       +     L+ L LD   L+    L + G L  
Sbjct: 24  ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPV 78

Query: 252 LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINAL 310
           LGTL L  N L  S+P     L +L+ L +S+N L  S+P  +L  L  L  LY+  N L
Sbjct: 79  LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 311 SGSIPNEIGNLKSLLDLRLDNNTLS 335
               P  +     L  L L NN L+
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLT 161


>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
           Immunodominant Glycoprotein Of Bacillus Anthracis Spores
 pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
           Immunodominant Glycoprotein Of Bacillus Anthracis Spores
 pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
           Immunodominant Glycoprotein Of Bacillus Anthracis Spores
          Length = 179

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 192 GSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLT 250
            S+P  +   T ++++ I  N ++   P    +L  L+ L L  N L+ ++P+ +   LT
Sbjct: 32  ASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLT-ALPVGVFDKLT 88

Query: 251 KLGTLYLHTNALFGSIPYEI-GNLKSLSDLQL 281
           KL  L LH N L  SIP  +  NLKSL+ + L
Sbjct: 89  KLTHLALHINQL-KSIPMGVFDNLKSLTHIYL 119



 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160
           F S   L YL+L +NQ   +       L+ L  L L  NQ   SIP  +G   +LK L+
Sbjct: 60  FDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SIP--MGVFDNLKSLT 115



 Score = 27.7 bits (60), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 240 GSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTN 299
            S+P  +   T++  L+L+ N +    P    +L  L+ L L+ N L          LT 
Sbjct: 32  ASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89

Query: 300 LAILYIGINALSGSIPNEI-GNLKSLLDLRLDNN 332
           L  L + IN L  SIP  +  NLKSL  + L NN
Sbjct: 90  LTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNN 122


>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
           Gpib-alpha And Human Alpha-thrombin
          Length = 290

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTK 251
           ++PP L   T+++++    NLL       +     L+ L LD   L+    L + G L  
Sbjct: 24  ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPV 78

Query: 252 LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINAL 310
           LGTL L  N L  S+P     L +L+ L +S+N L  S+P  +L  L  L  LY+  N L
Sbjct: 79  LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 311 SGSIPNEIGNLKSLLDLRLDNNTLS 335
               P  +     L  L L NN L+
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT 161


>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
 pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
          Length = 455

 Score = 28.5 bits (62), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 30/173 (17%)

Query: 99  DFSFSSFPHLGY--LDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHL 156
           +F+F      G    DL  ++ F ++     + + L+ L L+ N+ +         LTHL
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 157 KLLSFSKNQLSGFIPHEIGRXXXXXXXXXXXXXXKGSIPPSL-GNLTSLIYIDIGNNLLS 215
             L+ S+N L                         GSI   +  NL  L  +D+  N + 
Sbjct: 326 LKLNLSQNFL-------------------------GSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 216 GSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTKLGTLYLHTNALFGSIP 267
                    L +L +L LD N L  S+P  +   LT L  ++LHTN    S P
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412


>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
           Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
           2.6 Angstrom Resolution
          Length = 288

 Score = 28.5 bits (62), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTK 251
           ++PP L   T+++++    NLL       +     L+ L LD   L+    L + G L  
Sbjct: 24  ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPV 78

Query: 252 LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINAL 310
           LGTL L  N L  S+P     L +L+ L +S+N L  S+P  +L  L  L  LY+  N L
Sbjct: 79  LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 311 SGSIPNEIGNLKSLLDLRLDNNTLS 335
               P  +     L  L L NN L+
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLT 161


>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
 pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
          Length = 281

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTK 251
           ++PP L   T+++++    NLL       +     L+ L LD   L+    L + G L  
Sbjct: 25  ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPV 79

Query: 252 LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINAL 310
           LGTL L  N L  S+P     L +L+ L +S+N L  S+P  +L  L  L  LY+  N L
Sbjct: 80  LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 137

Query: 311 SGSIPNEIGNLKSLLDLRLDNNTLS 335
               P  +     L  L L NN L+
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLT 162


>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
           Resolution
 pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
           Resolution
 pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
           Resolution
          Length = 290

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTK 251
           ++PP L   T+++++    NLL       +     L+ L LD   L+    L + G L  
Sbjct: 24  ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPV 78

Query: 252 LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINAL 310
           LGTL L  N L  S+P     L +L+ L +S+N L  S+P  +L  L  L  LY+  N L
Sbjct: 79  LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 311 SGSIPNEIGNLKSLLDLRLDNNTLS 335
               P  +     L  L L NN L+
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT 161


>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
           Gpib-alpha And Alpha-thrombin At 2.6a
          Length = 279

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTK 251
           ++PP L   T+++++    NLL       +     L+ L LD   L+    L + G L  
Sbjct: 24  ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPV 78

Query: 252 LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINAL 310
           LGTL L  N L  S+P     L +L+ L +S+N L  S+P  +L  L  L  LY+  N L
Sbjct: 79  LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 311 SGSIPNEIGNLKSLLDLRLDNNTLS 335
               P  +     L  L L NN L+
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT 161


>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
           Interaction With Two Distinct Alpha-Thrombin Sites
          Length = 290

 Score = 28.1 bits (61), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 193 SIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTK 251
           ++PP L   T+++++    NLL       +     L+ L LD   L+    L + G L  
Sbjct: 24  ALPPDLPKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPV 78

Query: 252 LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINAL 310
           LGTL L  N L  S+P     L +L+ L +S+N L  S+P  +L  L  L  LY+  N L
Sbjct: 79  LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 311 SGSIPNEIGNLKSLLDLRLDNNTLS 335
               P  +     L  L L NN L+
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT 161


>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
           Tlr5
          Length = 407

 Score = 28.1 bits (61), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 198 LGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTKLGTLY 256
             + T L  + +  N ++    N    L  L +L LD N L  S+P  +   LT L  ++
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK-SVPDGIFDRLTSLQKIW 353

Query: 257 LHTNALFGSIP 267
           LHTN    S P
Sbjct: 354 LHTNPWDCSCP 364


>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
          Length = 612

 Score = 28.1 bits (61), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 29/186 (15%)

Query: 125 QIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRXXXXXXXX 184
           Q+ NL  L++L LS+N+  G           L+LL  +   L    PH            
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS----------- 418

Query: 185 XXXXXXKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLS-GSIP 243
                          NL  L  +++ + LL  S  + +  L+ L  L L  N+   GSI 
Sbjct: 419 ------------PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSIS 466

Query: 244 LS--LGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLA 301
            +  L  +  L  L L +  L          L++++ L LS+N+L G    S+  L++L 
Sbjct: 467 KTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD---SMDALSHLK 523

Query: 302 ILYIGI 307
            LY+ +
Sbjct: 524 GLYLNM 529


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.137    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,244,545
Number of Sequences: 62578
Number of extensions: 365312
Number of successful extensions: 1470
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 264
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)