Query 039642
Match_columns 353
No_of_seqs 373 out of 4507
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 11:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-42 2.3E-47 354.8 27.9 314 31-352 24-338 (968)
2 PLN00113 leucine-rich repeat r 100.0 5E-34 1.1E-38 291.2 18.8 267 82-351 119-409 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.6E-29 3.5E-34 226.7 2.0 273 80-353 124-423 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.9E-28 4.1E-33 219.9 6.0 270 82-353 79-348 (873)
5 KOG0444 Cytoskeletal regulator 99.9 6.9E-28 1.5E-32 218.1 -6.6 263 82-351 56-321 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 5.7E-27 1.2E-31 212.2 -5.3 263 82-353 79-369 (1255)
7 PLN03210 Resistant to P. syrin 99.9 9.8E-21 2.1E-25 194.8 21.7 122 227-353 779-900 (1153)
8 PLN03210 Resistant to P. syrin 99.9 6.9E-20 1.5E-24 188.6 23.1 237 105-353 610-876 (1153)
9 KOG0472 Leucine-rich repeat pr 99.9 2.8E-25 6E-30 191.5 -14.0 255 83-351 47-302 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 1.9E-23 4.2E-28 180.3 -10.8 241 82-335 69-310 (565)
11 cd00116 LRR_RI Leucine-rich re 99.8 4E-22 8.6E-27 178.8 -3.4 251 86-337 3-293 (319)
12 PRK15370 E3 ubiquitin-protein 99.8 9.3E-20 2E-24 176.8 12.6 239 82-352 179-421 (754)
13 KOG4237 Extracellular matrix p 99.8 2.7E-22 5.8E-27 172.8 -4.5 254 81-335 67-359 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 4.2E-19 9.1E-24 171.5 15.4 226 82-342 223-465 (788)
15 PRK15370 E3 ubiquitin-protein 99.8 9.1E-19 2E-23 170.0 12.3 226 81-335 199-428 (754)
16 cd00116 LRR_RI Leucine-rich re 99.8 1.3E-20 2.9E-25 168.9 -2.1 252 82-334 24-319 (319)
17 KOG0618 Serine/threonine phosp 99.8 1.6E-20 3.5E-25 177.3 -4.4 220 107-333 242-487 (1081)
18 PRK15387 E3 ubiquitin-protein 99.8 2E-17 4.4E-22 159.9 16.0 233 83-353 203-452 (788)
19 KOG0618 Serine/threonine phosp 99.8 2E-20 4.4E-25 176.6 -4.9 243 81-332 241-510 (1081)
20 KOG0617 Ras suppressor protein 99.7 1.1E-19 2.3E-24 140.1 -5.5 164 126-295 29-193 (264)
21 KOG0617 Ras suppressor protein 99.7 1.5E-19 3.3E-24 139.2 -5.5 163 102-270 29-192 (264)
22 KOG4237 Extracellular matrix p 99.6 2.2E-18 4.7E-23 148.9 -6.0 247 107-353 68-353 (498)
23 PLN03150 hypothetical protein; 99.6 1.8E-14 4E-19 139.3 13.5 147 35-191 371-528 (623)
24 KOG1909 Ran GTPase-activating 99.4 6.4E-15 1.4E-19 125.8 -3.9 183 152-334 90-310 (382)
25 COG4886 Leucine-rich repeat (L 99.4 6.1E-13 1.3E-17 122.8 6.2 176 154-337 116-292 (394)
26 KOG0532 Leucine-rich repeat (L 99.3 1.6E-14 3.4E-19 130.7 -5.6 180 129-318 74-253 (722)
27 COG4886 Leucine-rich repeat (L 99.3 1.5E-12 3.3E-17 120.2 6.1 197 110-315 97-294 (394)
28 KOG1909 Ran GTPase-activating 99.3 1.5E-13 3.2E-18 117.6 -2.5 230 80-310 29-310 (382)
29 KOG1259 Nischarin, modulator o 99.3 1.1E-12 2.4E-17 110.3 0.6 130 200-335 282-412 (490)
30 KOG0532 Leucine-rich repeat (L 99.2 1.2E-13 2.5E-18 125.2 -5.8 195 105-309 74-271 (722)
31 KOG3207 Beta-tubulin folding c 99.2 6E-13 1.3E-17 117.0 -1.6 208 128-336 119-340 (505)
32 PLN03150 hypothetical protein; 99.2 1.6E-11 3.4E-16 119.0 7.9 109 228-336 420-529 (623)
33 PF14580 LRR_9: Leucine-rich r 99.2 5E-12 1.1E-16 101.3 2.4 126 200-329 17-147 (175)
34 KOG3207 Beta-tubulin folding c 99.2 2.1E-12 4.6E-17 113.6 -1.3 199 151-351 118-331 (505)
35 KOG1259 Nischarin, modulator o 99.2 7.5E-12 1.6E-16 105.3 0.8 202 101-313 209-414 (490)
36 PF14580 LRR_9: Leucine-rich r 99.1 6.3E-11 1.4E-15 95.0 4.7 125 176-305 17-147 (175)
37 KOG4658 Apoptotic ATPase [Sign 99.1 1E-10 2.2E-15 116.1 5.2 109 104-213 543-653 (889)
38 PF13855 LRR_8: Leucine rich r 99.0 6E-10 1.3E-14 73.6 3.9 61 274-334 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 9.3E-11 2E-15 108.7 -2.4 85 252-339 234-322 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.9 1.8E-09 3.8E-14 107.4 4.9 107 82-189 546-653 (889)
41 KOG0531 Protein phosphatase 1, 98.9 1.6E-10 3.6E-15 107.1 -2.5 218 104-335 70-290 (414)
42 PF13855 LRR_8: Leucine rich r 98.9 1.8E-09 4E-14 71.2 3.2 61 250-310 1-61 (61)
43 COG5238 RNA1 Ran GTPase-activa 98.6 1.6E-09 3.4E-14 90.3 -2.9 135 201-335 156-316 (388)
44 KOG2982 Uncharacterized conser 98.6 4.5E-09 9.7E-14 88.7 -0.5 110 104-213 43-157 (418)
45 PF08263 LRRNT_2: Leucine rich 98.6 1E-07 2.2E-12 57.6 4.3 42 35-78 2-43 (43)
46 COG5238 RNA1 Ran GTPase-activa 98.6 5.6E-09 1.2E-13 87.0 -1.7 231 81-312 30-317 (388)
47 KOG2982 Uncharacterized conser 98.6 6.7E-09 1.5E-13 87.7 -1.6 85 104-188 69-156 (418)
48 KOG2120 SCF ubiquitin ligase, 98.6 2.7E-10 5.9E-15 95.9 -9.8 177 155-333 186-374 (419)
49 KOG1859 Leucine-rich repeat pr 98.5 7.9E-10 1.7E-14 103.4 -9.9 180 123-312 102-293 (1096)
50 KOG2120 SCF ubiquitin ligase, 98.5 4.9E-10 1.1E-14 94.4 -10.6 203 82-287 160-376 (419)
51 KOG1859 Leucine-rich repeat pr 98.5 1.4E-09 3E-14 101.9 -9.0 177 101-287 104-292 (1096)
52 KOG4579 Leucine-rich repeat (L 98.2 3.7E-08 8E-13 73.8 -5.2 83 203-287 54-136 (177)
53 PF12799 LRR_4: Leucine Rich r 98.1 2.2E-06 4.7E-11 51.9 2.7 36 299-335 2-37 (44)
54 KOG4579 Leucine-rich repeat (L 98.0 1.1E-07 2.3E-12 71.4 -5.0 136 204-343 29-167 (177)
55 PF12799 LRR_4: Leucine Rich r 98.0 5.3E-06 1.2E-10 50.2 2.7 36 275-311 2-37 (44)
56 PRK15386 type III secretion pr 98.0 3.9E-05 8.4E-10 69.5 8.8 76 102-189 48-123 (426)
57 KOG1644 U2-associated snRNP A' 98.0 1.8E-05 3.9E-10 63.6 5.7 104 226-331 42-149 (233)
58 PRK15386 type III secretion pr 97.9 4.5E-05 9.7E-10 69.1 8.9 136 126-284 48-187 (426)
59 KOG1644 U2-associated snRNP A' 97.9 3.7E-05 8.1E-10 61.8 5.9 104 154-259 42-149 (233)
60 KOG3665 ZYG-1-like serine/thre 97.8 6.5E-06 1.4E-10 80.4 0.9 112 201-314 147-266 (699)
61 KOG4341 F-box protein containi 97.8 1.8E-07 4E-12 82.6 -8.9 109 80-188 137-252 (483)
62 PF13306 LRR_5: Leucine rich r 97.8 0.00016 3.5E-09 55.3 8.2 123 221-349 7-129 (129)
63 KOG3665 ZYG-1-like serine/thre 97.8 6.5E-06 1.4E-10 80.4 0.4 139 202-342 122-270 (699)
64 PF13306 LRR_5: Leucine rich r 97.7 0.00013 2.8E-09 55.8 7.0 60 101-162 7-66 (129)
65 KOG2739 Leucine-rich acidic nu 97.5 4.8E-05 1E-09 63.7 1.8 88 221-312 38-130 (260)
66 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.2E-09 60.8 2.4 63 200-262 63-128 (260)
67 KOG2123 Uncharacterized conser 97.3 9.1E-06 2E-10 68.5 -4.7 98 250-352 19-123 (388)
68 KOG1947 Leucine rich repeat pr 96.8 7.6E-05 1.7E-09 70.8 -4.4 111 104-214 186-307 (482)
69 PF00560 LRR_1: Leucine Rich R 96.3 0.0015 3.2E-08 32.9 0.7 19 324-343 2-20 (22)
70 KOG1947 Leucine rich repeat pr 96.2 0.00024 5.1E-09 67.4 -4.6 15 295-309 359-373 (482)
71 KOG2123 Uncharacterized conser 96.0 0.00014 3E-09 61.6 -6.6 81 102-184 37-123 (388)
72 PF00560 LRR_1: Leucine Rich R 95.9 0.0037 7.9E-08 31.4 1.0 20 299-319 1-20 (22)
73 KOG4308 LRR-containing protein 95.7 2.6E-05 5.6E-10 73.0 -13.6 87 249-335 203-303 (478)
74 PF13504 LRR_7: Leucine rich r 94.4 0.025 5.4E-07 26.3 1.2 13 323-335 2-14 (17)
75 KOG4308 LRR-containing protein 94.0 0.00019 4.2E-09 67.2 -12.5 181 83-263 89-303 (478)
76 KOG3864 Uncharacterized conser 93.3 0.0056 1.2E-07 49.6 -3.5 82 227-308 102-186 (221)
77 KOG3864 Uncharacterized conser 93.2 0.0064 1.4E-07 49.3 -3.3 83 251-333 102-187 (221)
78 KOG4341 F-box protein containi 91.6 0.066 1.4E-06 48.4 0.6 247 81-327 164-457 (483)
79 PF13516 LRR_6: Leucine Rich r 90.5 0.052 1.1E-06 27.7 -0.7 16 322-337 2-17 (24)
80 KOG0473 Leucine-rich repeat pr 87.5 0.011 2.4E-07 49.0 -6.8 91 245-338 37-127 (326)
81 KOG0473 Leucine-rich repeat pr 86.7 0.0058 1.3E-07 50.7 -8.8 91 97-190 33-123 (326)
82 smart00370 LRR Leucine-rich re 86.0 0.68 1.5E-05 23.9 1.9 14 322-335 2-15 (26)
83 smart00369 LRR_TYP Leucine-ric 86.0 0.68 1.5E-05 23.9 1.9 14 322-335 2-15 (26)
84 smart00364 LRR_BAC Leucine-ric 77.7 1.6 3.5E-05 22.7 1.3 18 322-340 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 75.1 2.7 5.9E-05 21.9 1.8 15 321-335 1-15 (26)
86 KOG4242 Predicted myosin-I-bin 74.9 12 0.00025 35.1 6.8 108 227-334 355-480 (553)
87 smart00368 LRR_RI Leucine rich 71.8 3.4 7.3E-05 21.9 1.7 15 322-336 2-16 (28)
88 KOG4242 Predicted myosin-I-bin 62.2 23 0.0005 33.2 6.0 85 251-335 355-453 (553)
89 KOG3763 mRNA export factor TAP 55.9 5.1 0.00011 38.0 0.8 65 248-312 216-284 (585)
90 smart00367 LRR_CC Leucine-rich 55.2 8.9 0.00019 19.7 1.4 15 321-335 1-16 (26)
91 KOG3763 mRNA export factor TAP 42.3 15 0.00032 35.0 1.6 67 223-289 215-285 (585)
92 PF02950 Conotoxin: Conotoxin; 27.8 17 0.00037 24.4 -0.3 15 8-22 1-15 (75)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-42 Score=354.81 Aligned_cols=314 Identities=42% Similarity=0.630 Sum_probs=213.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccceeeeCCCCCEEEEEeCCCCcceecCcccccCCCCCCE
Q 039642 31 SCDSTEEAHALLKWKTSLQNQNGSLLPSWTLNNPTKISPCTWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGY 110 (353)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~~~v~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~ 110 (353)
+|..++|+.+|++|++++.+ +.....+|+ ...++|.|.|+.|+..++|+.++++++.+.|.++. .+..+++|+.
T Consensus 24 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~w~----~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~ 97 (968)
T PLN00113 24 SMLHAEELELLLSFKSSIND-PLKYLSNWN----SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQT 97 (968)
T ss_pred cCCCHHHHHHHHHHHHhCCC-CcccCCCCC----CCCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCE
Confidence 45457899999999999964 556678997 56789999999999888999999999999988877 8999999999
Q ss_pred EECCCCCCcccCCccCC-CCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCc
Q 039642 111 LDLRINQFFGIIPPQIG-NLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNF 189 (353)
Q Consensus 111 L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 189 (353)
|++++|.+.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 99999999888876554 788888888888877765553 345666666666666666666666666666666666666
Q ss_pred CCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchh
Q 039642 190 LKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYE 269 (353)
Q Consensus 190 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 269 (353)
+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 66666666666666666666666666666666666666666666666665555555566666666666666555555555
Q ss_pred ccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCC
Q 039642 270 IGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLV 349 (353)
Q Consensus 270 l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 349 (353)
+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555455555554
Q ss_pred eee
Q 039642 350 TLY 352 (353)
Q Consensus 350 ~L~ 352 (353)
+|+
T Consensus 336 ~L~ 338 (968)
T PLN00113 336 VLQ 338 (968)
T ss_pred EEE
Confidence 444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5e-34 Score=291.17 Aligned_cols=267 Identities=39% Similarity=0.581 Sum_probs=123.8
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
+++.+++++|.+.+.+|. ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 119 ~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 566666666666554432 23444555555555554444444444555555555554444444444444444444444
Q ss_pred ccCcCCCCCcccccCCCCCCEEEcccCcCCccCCcc------------------------CCCCCCccEEEcccCccccc
Q 039642 162 SKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPS------------------------LGNLTSLIYIDIGNNLLSGS 217 (353)
Q Consensus 162 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~------------------------l~~l~~L~~L~l~~n~l~~~ 217 (353)
++|.+.+.+|..+.++++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 444444444444444444444444444444444444 44444444444444444444
Q ss_pred CCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCC
Q 039642 218 IPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNL 297 (353)
Q Consensus 218 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 297 (353)
+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.+|..++.+
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCee
Q 039642 298 TNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTL 351 (353)
Q Consensus 298 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 351 (353)
++|+.|++++|++++.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 444444444444444444433333333333333333333333333334444433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-29 Score=226.68 Aligned_cols=273 Identities=24% Similarity=0.240 Sum_probs=193.0
Q ss_pred CCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEE
Q 039642 80 AGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLL 159 (353)
Q Consensus 80 ~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 159 (353)
.|+++.++|.+|-+...-.. .++.++.|+.|||+.|.++..--..|..-.++++|+|++|.++..-...|..+.+|.+|
T Consensus 124 sghl~~L~L~~N~I~sv~se-~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSE-ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeeccccccccHH-HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 57899999999988743333 77788888888888888876655566666778888888888876666677777778888
Q ss_pred EcccCcCCCCCcccccCCCCCCEEEcccCcCCc------------------------cCCccCCCCCCccEEEcccCccc
Q 039642 160 SFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKG------------------------SIPPSLGNLTSLIYIDIGNNLLS 215 (353)
Q Consensus 160 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~------------------------~~~~~l~~l~~L~~L~l~~n~l~ 215 (353)
.|+.|.++...+..|.++++|+.|+|..|++.- .-...|..+.++++|+++.|+++
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 888888775555666667777777777776541 12223445566777777777777
Q ss_pred ccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCcccc
Q 039642 216 GSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLG 295 (353)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 295 (353)
..-...+.+++.|+.|++++|.+...-++.+...++|++|+|++|+++...+..+..++.|++|.|++|.++..-...+.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 55556667788888888888888877777888888888888888888766666776677777777777776643333556
Q ss_pred CCCCCCeeeccCCcccccCCc---cCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 296 NLTNLAILYIGINALSGSIPN---EIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 296 ~~~~L~~L~ls~n~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
.+++|++|||++|.+++.+-+ .|..+++|++|++.+|++....-.+|.++++|++|||
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 667777777777777654432 3555677777777777776333356667777777664
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.9e-28 Score=219.87 Aligned_cols=270 Identities=23% Similarity=0.227 Sum_probs=205.6
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
.+..+++++|.+...-.. .|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.++..-.+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~-~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFE-FFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHH-HHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 567788888888754333 6778999999999988887 46765555667888888888887666667778888888888
Q ss_pred ccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccc
Q 039642 162 SKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGS 241 (353)
Q Consensus 162 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 241 (353)
+.|.+...--..|..-.++++|+|++|.++......|..+.+|..|.++.|+++...+..|..+++|+.|++..|++...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88888754444566667888888888888877677788888888888888888865556677788888888888888644
Q ss_pred cCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCC
Q 039642 242 IPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNL 321 (353)
Q Consensus 242 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~ 321 (353)
-...|..+++|+.|.++.|.+...-...|..+.++++|+|+.|+++..-..++.++++|+.|++|+|.|...-++....+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 35567778888888888888765555566777788888888888775555567777888888888888877777777777
Q ss_pred CCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 322 KSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 322 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
++|+.|+|++|+++.-.+..|..+..|++|+|
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 88888888888888777777777777776654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=6.9e-28 Score=218.11 Aligned_cols=263 Identities=28% Similarity=0.416 Sum_probs=194.7
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcc-cCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFG-IIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
+++++++..|.+.. +.. .++.++.||.+.+..|.+.. -+|..+..+..|.+|||+.|++. ..|..+...+++-+|+
T Consensus 56 kLEHLs~~HN~L~~-vhG-ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLIS-VHG-ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN 132 (1255)
T ss_pred hhhhhhhhhhhhHh-hhh-hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence 56666677776642 223 56778888888888887753 36777888889999999999988 7888888888889999
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCc-
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLS- 239 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~- 239 (353)
|++|+|..+...-+.+++.|-+|++++|++. .+|+.+.++..|++|.+++|.+...-...+..+++|+.|.+++.+-+
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 9999988433344567888889999999887 67888888889999999998876443344556677777777776544
Q ss_pred cccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCc
Q 039642 240 GSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIG 319 (353)
Q Consensus 240 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~ 319 (353)
..+|.++..+.+|+.+|++.|.+ ..+|+.+.++.+|+.|+|++|+++ .+....+...+|+.|++|.|+++ .+|.+++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHh
Confidence 35677777778888888888877 567777777788888888888877 34445566677777777777777 6777777
Q ss_pred CCCCCCEEeCcCCcCc-cccCccccCCCCCCee
Q 039642 320 NLKSLLDLRLDNNTLS-GSIPLSLGNLTKLVTL 351 (353)
Q Consensus 320 ~~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L 351 (353)
+++.|+.|.+.+|+++ .-+|+.++.+.+|+++
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 7777777777777766 4466666666666544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=5.7e-27 Score=212.22 Aligned_cols=263 Identities=30% Similarity=0.444 Sum_probs=178.3
Q ss_pred CEEEEEeCCCCcce-ecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcC-CCCCCCCCEE
Q 039642 82 RVNSINLTSAGLKG-TLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPE-IGYLTHLKLL 159 (353)
Q Consensus 82 ~v~~l~l~~~~l~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 159 (353)
+++++.++.|++.. .+|. .+.++..|+.|+|+.|.+. +.|..+...+++-+|+|++|++. .+|.. |-++..|-+|
T Consensus 79 ~LRsv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhHHHhhhccccccCCCCc-hhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 34444455554432 2344 4555555555555555554 33444555555555555555554 33322 2344445555
Q ss_pred EcccCcCCCCCcccccCCCCCCEEEcccC------------------------cCC-ccCCccCCCCCCccEEEcccCcc
Q 039642 160 SFSKNQLSGFIPHEIGRLSSLNGLNLYSN------------------------FLK-GSIPPSLGNLTSLIYIDIGNNLL 214 (353)
Q Consensus 160 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n------------------------~~~-~~~~~~l~~l~~L~~L~l~~n~l 214 (353)
||++|.+. .+|+....+..|++|.+++| +-+ ..+|.++..+.+|..++++.|.+
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 55555544 34444444444444444444 322 35677777778888888888887
Q ss_pred cccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcc-cCCcc
Q 039642 215 SGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNG-SIPFS 293 (353)
Q Consensus 215 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~ 293 (353)
. ..|+.+.++++|+.|++++|.++ .+....+...+|++|+++.|++ ..+|+.+.++++|+.|.+.+|+++- -+|+.
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 7 66777888888888888888887 4444556667888888888887 5778888888888888888888763 46788
Q ss_pred ccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 294 LGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 294 l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
++.+.+|+.+..++|.+. ..|+.++.|..|+.|.|+.|++. .+|+.+--++.|+.||+
T Consensus 312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence 888888999988888887 88999999999999999999988 79999988999998875
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=9.8e-21 Score=194.81 Aligned_cols=122 Identities=26% Similarity=0.297 Sum_probs=77.2
Q ss_pred CCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeecc
Q 039642 227 SLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIG 306 (353)
Q Consensus 227 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls 306 (353)
+|+.|++++|.....+|..++++++|+.|++++|...+.+|... .+++|++|++++|.....+|.. .++|++|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 45555555555555556666666666666666655444555443 4566666666665443333332 2567777777
Q ss_pred CCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 307 INALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 307 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
+|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF 900 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence 77776 67777888888888888886555567777777777776653
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=6.9e-20 Score=188.56 Aligned_cols=237 Identities=21% Similarity=0.261 Sum_probs=159.7
Q ss_pred CCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEE
Q 039642 105 FPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLN 184 (353)
Q Consensus 105 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 184 (353)
..+|+.|++.++.+. .++..+..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 456667777766654 344455666777777777654333454 366667777777777665556666677777777777
Q ss_pred cccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccc------------------
Q 039642 185 LYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL------------------ 246 (353)
Q Consensus 185 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~------------------ 246 (353)
+++|.....+|..+ ++++|+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhc
Confidence 77665444555544 5666777777766544444432 345666666666654 233211
Q ss_pred ------------cCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccC
Q 039642 247 ------------GNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSI 314 (353)
Q Consensus 247 ------------~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~ 314 (353)
...++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 123567888888887777788888888888999988876544666654 6788888998888655555
Q ss_pred CccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 315 PNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 315 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
|.. .++|+.|++++|.++ .+|..+..+++|++|++
T Consensus 842 p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 842 PDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred ccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEEC
Confidence 543 368899999999998 78999999999999865
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=2.8e-25 Score=191.53 Aligned_cols=255 Identities=35% Similarity=0.517 Sum_probs=187.5
Q ss_pred EEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcc
Q 039642 83 VNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFS 162 (353)
Q Consensus 83 v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 162 (353)
...+.++.|.+.. +.. .+.++..+.++.+.+|.+. ..|.+++.+.+++.++.+.|++. .+|+.++.+.+++.++++
T Consensus 47 l~~lils~N~l~~-l~~-dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEV-LRE-DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhh-ccH-hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4466677776652 333 5777888888888888776 45666777888888888888877 777778888888888888
Q ss_pred cCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcccc
Q 039642 163 KNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSI 242 (353)
Q Consensus 163 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 242 (353)
+|.+. .+|+.++.+-.|+.++..+|++. ..|..+..+.++..+++.+|.+....|. .-+++.|++++...|.++ .+
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-cC
Confidence 88877 66667777778888888888777 5677777777888888888887744333 334777888888777776 67
Q ss_pred CccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCc-cccCCCCCCeeeccCCcccccCCccCcCC
Q 039642 243 PLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLTNLAILYIGINALSGSIPNEIGNL 321 (353)
Q Consensus 243 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~~~~L~~L~ls~n~~~~~~~~~~~~~ 321 (353)
|..++.+.+|+.|++..|.+ ..+| .|..++.|++|+++.|++. .+|. ....++++..||+..|+++ ..|+.++.+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 77788888888888888877 4556 5677777788888877776 4444 3346777778888888777 677777777
Q ss_pred CCCCEEeCcCCcCccccCccccCCCCCCee
Q 039642 322 KSLLDLRLDNNTLSGSIPLSLGNLTKLVTL 351 (353)
Q Consensus 322 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 351 (353)
.+|+.||+|+|.++ ..|..++++ .|++|
T Consensus 275 rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 275 RSLERLDLSNNDIS-SLPYSLGNL-HLKFL 302 (565)
T ss_pred hhhhhhcccCCccc-cCCcccccc-eeeeh
Confidence 77888888888777 566667776 56554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.9e-23 Score=180.25 Aligned_cols=241 Identities=31% Similarity=0.423 Sum_probs=213.9
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
.++.+++.++.+. .+|+ +++.+..+..++.+.|++. ++|+.+..+..|+.++++.|.+. .+|+.++.+-.++.++.
T Consensus 69 ~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 5778888888887 5666 7889999999999999987 57888999999999999999998 78888999999999999
Q ss_pred ccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccc
Q 039642 162 SKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGS 241 (353)
Q Consensus 162 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 241 (353)
.+|+++ ..|+++.++.+|..+++.+|.+....|..+ .+..|++++...|.+. .+|+.++.+.+|..|++..|++. .
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence 999998 778899999999999999999985544444 4899999999998877 78889999999999999999998 6
Q ss_pred cCccccCCCCCCEEEcccCcCcCCcch-hccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcC
Q 039642 242 IPLSLGNLTKLGTLYLHTNALFGSIPY-EIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGN 320 (353)
Q Consensus 242 ~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~ 320 (353)
+| .|.++..|+++.++.|.+. .+|. ...+++++..||+.+|++. ..|+.+..+.+|++||+|+|.++ ..|..+++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 77 8899999999999999984 5554 4558999999999999999 78888999999999999999999 67888999
Q ss_pred CCCCCEEeCcCCcCc
Q 039642 321 LKSLLDLRLDNNTLS 335 (353)
Q Consensus 321 ~~~L~~L~l~~n~l~ 335 (353)
+ .|++|-+.+|++.
T Consensus 297 l-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLR 310 (565)
T ss_pred c-eeeehhhcCCchH
Confidence 9 9999999999876
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=4e-22 Score=178.82 Aligned_cols=251 Identities=25% Similarity=0.260 Sum_probs=144.4
Q ss_pred EEeCCCCccee-cCcccccCCCCCCEEECCCCCCccc----CCccCCCCCCCcEEeCCCCcCCC------CCCcCCCCCC
Q 039642 86 INLTSAGLKGT-LHDFSFSSFPHLGYLDLRINQFFGI----IPPQIGNLSMLKFLGLSFNQFSG------SIPPEIGYLT 154 (353)
Q Consensus 86 l~l~~~~l~~~-~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~------~~~~~l~~l~ 154 (353)
|+|.++.+.+. ... .+..++.|+.++++++.+++. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 3 l~L~~~~l~~~~~~~-~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATE-LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHH-HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 44555555422 222 445555677777777666432 33445556667777776665541 1223345566
Q ss_pred CCCEEEcccCcCCCCCcccccCCC---CCCEEEcccCcCCc----cCCccCCCC-CCccEEEcccCccccc----CCccC
Q 039642 155 HLKLLSFSKNQLSGFIPHEIGRLS---SLNGLNLYSNFLKG----SIPPSLGNL-TSLIYIDIGNNLLSGS----IPNEV 222 (353)
Q Consensus 155 ~L~~L~L~~n~~~~~~~~~l~~l~---~L~~L~l~~n~~~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~~ 222 (353)
+|++|++++|.+....+..+..+. +|+.|++++|.+.+ .+...+..+ ++|+.|++++|.+++. +...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 777777777766544444443333 37777777776652 122233445 6777777777776632 23334
Q ss_pred CCCCCCCEEEcccCCCccc----cCccccCCCCCCEEEcccCcCcCCc----chhccCCCCCCEEeccCCcCcccCCccc
Q 039642 223 GNLKSLSDLRLDNNTLSGS----IPLSLGNLTKLGTLYLHTNALFGSI----PYEIGNLKSLSDLQLSYNTLNGSIPFSL 294 (353)
Q Consensus 223 ~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~l 294 (353)
..+++|++|++++|.+++. ++..+...++|++|++++|.+.+.. ...+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5566777777777777632 2233444567777777777765332 3344556777777777777764222111
Q ss_pred c-----CCCCCCeeeccCCcccc----cCCccCcCCCCCCEEeCcCCcCccc
Q 039642 295 G-----NLTNLAILYIGINALSG----SIPNEIGNLKSLLDLRLDNNTLSGS 337 (353)
Q Consensus 295 ~-----~~~~L~~L~ls~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~ 337 (353)
. ..+.|++|++++|.++. .+...+..+++|+.+++++|.++..
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 1 23677778877777752 2233445557777788887777744
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=9.3e-20 Score=176.83 Aligned_cols=239 Identities=25% Similarity=0.408 Sum_probs=155.2
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
..+.+++++.+++ .+|. .+ .++++.|++++|.++. +|..+. ++|++|++++|.++ .+|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~-~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPA-CI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCc-cc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 4567777777766 3444 23 2478888888888874 454443 47888888888887 5565442 46888888
Q ss_pred ccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccc
Q 039642 162 SKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGS 241 (353)
Q Consensus 162 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 241 (353)
++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|.++ .
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-A 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-c
Confidence 888887 5665553 47888888888887 4566543 478888888888774 444332 36777777777776 3
Q ss_pred cCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCC
Q 039642 242 IPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNL 321 (353)
Q Consensus 242 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~ 321 (353)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--
Confidence 44333 2567777777777754 454442 57777777777776 4554432 56777777777776 4555443
Q ss_pred CCCCEEeCcCCcCccccCccc----cCCCCCCeee
Q 039642 322 KSLLDLRLDNNTLSGSIPLSL----GNLTKLVTLY 352 (353)
Q Consensus 322 ~~L~~L~l~~n~l~~~~p~~~----~~l~~L~~L~ 352 (353)
+.|+.|++++|+++ .+|..+ ..++++..|+
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence 35777777777776 444433 2335555554
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=2.7e-22 Score=172.81 Aligned_cols=254 Identities=22% Similarity=0.223 Sum_probs=177.4
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCC-CcCCCCCCcCCCCCCCCCEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSF-NQFSGSIPPEIGYLTHLKLL 159 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L 159 (353)
...++|+|..|+++ .+|+.+|+.+++||.|+|+.|.|+.+.|.+|.+++.|..|-+.+ |+|+..-...|.++..++.|
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 37889999999997 67777999999999999999999999999999999988877766 88885555668899999999
Q ss_pred EcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccc------------cCCccCCCCCC
Q 039642 160 SFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSG------------SIPNEVGNLKS 227 (353)
Q Consensus 160 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~~ 227 (353)
.+.-|++.-.....|..+++|..|.+.+|.+...--..+..+..++.+++..|.+-. ..|..++.+.-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 999999887777788999999999999998873333367788888888888876321 11111221111
Q ss_pred CCEEEccc-------------------------CCCccccC-ccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEec
Q 039642 228 LSDLRLDN-------------------------NTLSGSIP-LSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQL 281 (353)
Q Consensus 228 L~~L~l~~-------------------------n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 281 (353)
..-..+.+ +...+..| ..|..+++|+.|++++|.++++-+.+|....++++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 11111111 11111122 23556667777777777776666666666677777777
Q ss_pred cCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCc
Q 039642 282 SYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 282 ~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 335 (353)
..|++...-...+.++..|+.|+|.+|+|+...|.+|..+.+|..|++-.|++.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 777666433345566666777777777777666666666667777776666554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.2e-19 Score=171.48 Aligned_cols=226 Identities=26% Similarity=0.314 Sum_probs=116.9
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
+++.|++.+|.+.. +|. ..++|++|++++|.++. +|.. .++|+.|++++|.+. .+|.. ..+|+.|++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWI 289 (788)
T ss_pred CCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhc---hhhcCEEEC
Confidence 34445555544442 222 13455555555555542 2221 234555555555444 22321 134555666
Q ss_pred ccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCC----------------C-CCccEEEcccCcccccCCccCCC
Q 039642 162 SKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGN----------------L-TSLIYIDIGNNLLSGSIPNEVGN 224 (353)
Q Consensus 162 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~----------------l-~~L~~L~l~~n~l~~~~~~~~~~ 224 (353)
++|.+. .+|. ..++|+.|++++|.+++ +|..... + .+|++|++++|.+++ +|..
T Consensus 290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l--- 360 (788)
T PRK15387 290 FGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTL--- 360 (788)
T ss_pred cCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCC---
Confidence 666555 3332 12567777777776663 2321100 0 134444444444432 2221
Q ss_pred CCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeee
Q 039642 225 LKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILY 304 (353)
Q Consensus 225 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 304 (353)
..+|+.|++++|.++ .+|.. ..+|+.|++++|.+++ +|.. .++|+.|++++|.+++ +|.. ..+|+.|+
T Consensus 361 p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~ 428 (788)
T PRK15387 361 PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLS 428 (788)
T ss_pred Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhh
Confidence 123344444444443 23321 2356667777776643 3432 2467777777777763 4432 24577777
Q ss_pred ccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccc
Q 039642 305 IGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSL 342 (353)
Q Consensus 305 ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 342 (353)
+++|+++ .+|..+..+++|+.|++++|++++..|..+
T Consensus 429 Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 429 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 7887777 677777788888888888888887776655
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=9.1e-19 Score=169.97 Aligned_cols=226 Identities=23% Similarity=0.425 Sum_probs=178.9
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
..++.+++++|.+. .+|. .+ .++|++|++++|.++. +|..+. ++|+.|++++|.+. .+|..+. .+|++|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~-~l--~~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPE-NL--QGNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCCh-hh--ccCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 47899999999988 4555 33 3589999999999884 565443 47999999999998 6776653 5799999
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcc
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG 240 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 240 (353)
+++|.+. .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.+++
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS 339 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc
Confidence 9999998 5676554 58999999999998 4565443 579999999999984 55433 3689999999999984
Q ss_pred ccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccC--
Q 039642 241 SIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEI-- 318 (353)
Q Consensus 241 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~-- 318 (353)
+|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|++++|+++ .+|..+
T Consensus 340 -LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~ 409 (754)
T PRK15370 340 -LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPH 409 (754)
T ss_pred -CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHH
Confidence 665553 69999999999985 5666553 68999999999998 5665554 47999999999998 566544
Q ss_pred --cCCCCCCEEeCcCCcCc
Q 039642 319 --GNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 319 --~~~~~L~~L~l~~n~l~ 335 (353)
..++++..+++.+|+++
T Consensus 410 ~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 410 FRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhhcCCCccEEEeeCCCcc
Confidence 44588999999999986
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=1.3e-20 Score=168.93 Aligned_cols=252 Identities=21% Similarity=0.228 Sum_probs=186.8
Q ss_pred CEEEEEeCCCCccee----cCcccccCCCCCCEEECCCCCCcc------cCCccCCCCCCCcEEeCCCCcCCCCCCcCCC
Q 039642 82 RVNSINLTSAGLKGT----LHDFSFSSFPHLGYLDLRINQFFG------IIPPQIGNLSMLKFLGLSFNQFSGSIPPEIG 151 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~----~~~~~l~~l~~L~~L~l~~n~l~~------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 151 (353)
.++.++++++.+.+. ++. .+...+.+++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 488999999988542 333 56688889999999987762 2344567788999999999998755555554
Q ss_pred CCC---CCCEEEcccCcCCC----CCcccccCC-CCCCEEEcccCcCCcc----CCccCCCCCCccEEEcccCccccc--
Q 039642 152 YLT---HLKLLSFSKNQLSG----FIPHEIGRL-SSLNGLNLYSNFLKGS----IPPSLGNLTSLIYIDIGNNLLSGS-- 217 (353)
Q Consensus 152 ~l~---~L~~L~L~~n~~~~----~~~~~l~~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~-- 217 (353)
.+. +|++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 444 49999999998873 223345566 8999999999998742 333456778999999999998842
Q ss_pred --CCccCCCCCCCCEEEcccCCCccc----cCccccCCCCCCEEEcccCcCcCCcchhcc-----CCCCCCEEeccCCcC
Q 039642 218 --IPNEVGNLKSLSDLRLDNNTLSGS----IPLSLGNLTKLGTLYLHTNALFGSIPYEIG-----NLKSLSDLQLSYNTL 286 (353)
Q Consensus 218 --~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~l 286 (353)
++..+...++|++|++++|.+++. +...+..+++|++|++++|.+++.....+. ..+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 333455668999999999998743 344567789999999999998763333222 247999999999998
Q ss_pred cc----cCCccccCCCCCCeeeccCCccccc----CCccCcCC-CCCCEEeCcCCcC
Q 039642 287 NG----SIPFSLGNLTNLAILYIGINALSGS----IPNEIGNL-KSLLDLRLDNNTL 334 (353)
Q Consensus 287 ~~----~~~~~l~~~~~L~~L~ls~n~~~~~----~~~~~~~~-~~L~~L~l~~n~l 334 (353)
++ .+...+..+++|+++++++|.++.. ....+... +.++.+++.+|++
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 73 2334456678999999999999854 33344444 7899999998864
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=1.6e-20 Score=177.30 Aligned_cols=220 Identities=33% Similarity=0.401 Sum_probs=112.7
Q ss_pred CCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcc
Q 039642 107 HLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLY 186 (353)
Q Consensus 107 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 186 (353)
+|++++++.|.+.+ +|+.+..+.+|+.++...|.++ .+|..+....+|+.|++.+|.+. .+|........|++|++.
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 56666666666653 3455566666666666666664 55555556666666666666655 444455556666666666
Q ss_pred cCcCCccCCccC-C-------------------------CCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcc
Q 039642 187 SNFLKGSIPPSL-G-------------------------NLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG 240 (353)
Q Consensus 187 ~n~~~~~~~~~l-~-------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 240 (353)
.|.+. ..|+.+ . ..+.|+.|.+.+|.+++..-..+.++++|+.|++++|++..
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 66654 222211 1 12234444445555544444444455555555555555542
Q ss_pred ccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcC
Q 039642 241 SIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGN 320 (353)
Q Consensus 241 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~ 320 (353)
.....+.++..|++|+|++|.+ ..+|..+..++.|++|...+|++. .+| .+.+++.|+.+|+|.|.++......-..
T Consensus 398 fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 2223344455555555555555 334444555555555555555554 344 3445555555555555554322111112
Q ss_pred CCCCCEEeCcCCc
Q 039642 321 LKSLLDLRLDNNT 333 (353)
Q Consensus 321 ~~~L~~L~l~~n~ 333 (353)
.++|++||+++|.
T Consensus 475 ~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNT 487 (1081)
T ss_pred CcccceeeccCCc
Confidence 2455555555554
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=2e-17 Score=159.92 Aligned_cols=233 Identities=30% Similarity=0.383 Sum_probs=157.8
Q ss_pred EEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcc
Q 039642 83 VNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFS 162 (353)
Q Consensus 83 v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 162 (353)
-..++++++++. .+|. .+. ++|+.|++.+|.++. +|. ..++|++|++++|.++ .+|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~-~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCc-chh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 346788888776 5665 443 478888999888874 443 2578899999999888 45542 4678888999
Q ss_pred cCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCC-------------C----
Q 039642 163 KNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGN-------------L---- 225 (353)
Q Consensus 163 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-------------~---- 225 (353)
+|.+. .+|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|.+++ +|..... +
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp 341 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLP 341 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCcccccccccccCccccccccc
Confidence 88877 44432 257888999999887 44542 4689999999998885 3331111 0
Q ss_pred CCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeec
Q 039642 226 KSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYI 305 (353)
Q Consensus 226 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 305 (353)
.+|+.|++++|+++ .+|.. ..+|+.|++++|.++ .+|.. .++|+.|++++|++++ +|.. .++|+.|++
T Consensus 342 ~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL 409 (788)
T PRK15387 342 SGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMV 409 (788)
T ss_pred cccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence 14555555555554 23321 234555555555553 23332 2467888888888873 4432 357888899
Q ss_pred cCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 306 GINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 306 s~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
++|+++ .+|.. ..+|+.|++++|+++ .+|..+..+++|++|+|
T Consensus 410 S~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 410 SGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 988887 46643 346888999999998 78999999999999875
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=2e-20 Score=176.64 Aligned_cols=243 Identities=28% Similarity=0.377 Sum_probs=193.1
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
..++.++++.+.+. .+|. .+..+.+|+.++..+|.++ .+|..+....+|+.|.+..|.+. .+|....+...|++|+
T Consensus 241 ~nl~~~dis~n~l~-~lp~-wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPE-WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchhhhh-cchH-HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 35666666666665 3454 7888999999999999995 56777888889999999999998 7788888899999999
Q ss_pred cccCcCCCCCccccc--------------------------CCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcc
Q 039642 161 FSKNQLSGFIPHEIG--------------------------RLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLL 214 (353)
Q Consensus 161 L~~n~~~~~~~~~l~--------------------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 214 (353)
|..|.+. .+|..+. ..+.|+.|++.+|.+++...+.+.++..|+.|++++|++
T Consensus 317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 9999886 3332221 123477788889999887777888999999999999999
Q ss_pred cccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCccc-CCcc
Q 039642 215 SGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGS-IPFS 293 (353)
Q Consensus 215 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~ 293 (353)
.......+.++..|++|++++|+++ .+|..+..++.|++|...+|.+ ...| .+..++.|+.+|++.|+++.. ++..
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce-eech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 8555566889999999999999998 7889999999999999999998 5677 678899999999999999853 3333
Q ss_pred ccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCC
Q 039642 294 LGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNN 332 (353)
Q Consensus 294 l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n 332 (353)
.. .++|++||+++|.-....-..+..++.+...+++-+
T Consensus 473 ~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 473 LP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 22 389999999999754344444566677777777666
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-19 Score=140.06 Aligned_cols=164 Identities=34% Similarity=0.523 Sum_probs=116.4
Q ss_pred CCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCcc
Q 039642 126 IGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLI 205 (353)
Q Consensus 126 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 205 (353)
+..+.+.+.|.++.|+++ .+|+.+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345566777777777777 66777777777777777777776 66777777777777777777766 6677777777777
Q ss_pred EEEcccCcccc-cCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCC
Q 039642 206 YIDIGNNLLSG-SIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYN 284 (353)
Q Consensus 206 ~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 284 (353)
.|++++|.+.. .+|..|..++.|+.|.+++|.+. .+|..++++++|+.|.+.+|.+ -.+|..++.+..|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccc
Confidence 77777777653 46666667777777777777776 5666777777777777777776 355666667777777777777
Q ss_pred cCcccCCcccc
Q 039642 285 TLNGSIPFSLG 295 (353)
Q Consensus 285 ~l~~~~~~~l~ 295 (353)
+++ .+|..++
T Consensus 184 rl~-vlppel~ 193 (264)
T KOG0617|consen 184 RLT-VLPPELA 193 (264)
T ss_pred eee-ecChhhh
Confidence 776 4444443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=1.5e-19 Score=139.21 Aligned_cols=163 Identities=33% Similarity=0.537 Sum_probs=105.1
Q ss_pred ccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCC
Q 039642 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLN 181 (353)
Q Consensus 102 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 181 (353)
+-++.+++.|.+++|+++. +|..+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|.+. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 3345556666667776663 3444666667777777777666 56666677777777777666665 6666777777777
Q ss_pred EEEcccCcCC-ccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccC
Q 039642 182 GLNLYSNFLK-GSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTN 260 (353)
Q Consensus 182 ~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 260 (353)
.|++.+|.+. ..+|..|..+..|+.|.+++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.+..|++|.+++|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 7777666654 345555666666666777776665 55666677777777777776665 56666666777777777777
Q ss_pred cCcCCcchhc
Q 039642 261 ALFGSIPYEI 270 (353)
Q Consensus 261 ~l~~~~~~~l 270 (353)
++ ..+|..+
T Consensus 184 rl-~vlppel 192 (264)
T KOG0617|consen 184 RL-TVLPPEL 192 (264)
T ss_pred ee-eecChhh
Confidence 66 3444333
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=2.2e-18 Score=148.89 Aligned_cols=247 Identities=25% Similarity=0.241 Sum_probs=199.1
Q ss_pred CCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEccc-CcCCCCCcccccCCCCCCEEEc
Q 039642 107 HLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSK-NQLSGFIPHEIGRLSSLNGLNL 185 (353)
Q Consensus 107 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l 185 (353)
.-..++|..|.|+...+.+|..+++|+.|||++|.|+.+-|..|.++++|..|-+.+ |+|+......|..+..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567899999999988889999999999999999999988899999999987776666 8898655567889999999999
Q ss_pred ccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcc------------ccCccccCCC---
Q 039642 186 YSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG------------SIPLSLGNLT--- 250 (353)
Q Consensus 186 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~------------~~~~~~~~l~--- 250 (353)
.-|++.....+.+..++++..|.+.+|.+....-..+..+..++.+.+..|.+.- ..|..++...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 9999987778889999999999999999885444478888899999988887321 1111222111
Q ss_pred -------------------CCCEE--Ec-ccCcCcCCcc-hhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccC
Q 039642 251 -------------------KLGTL--YL-HTNALFGSIP-YEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGI 307 (353)
Q Consensus 251 -------------------~L~~L--~L-~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~ 307 (353)
.++.+ .+ +.+...++.| ..|..+++|++|++++|++++.-+.++.....+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 11111 11 1122223333 3577899999999999999988788999999999999999
Q ss_pred CcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 308 NALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 308 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
|++...--..|.++..|+.|+|++|+|+...|..|..+.+|.+|++
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 9998766677899999999999999999999999999999988874
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=1.8e-14 Score=139.26 Aligned_cols=147 Identities=34% Similarity=0.589 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC-----ccceeeeCCC-----CCEEEEEeCCCCcceecCcccccC
Q 039642 35 TEEAHALLKWKTSLQNQNGSLLPSWTLNNPTKISPC-----TWFGIHCNHA-----GRVNSINLTSAGLKGTLHDFSFSS 104 (353)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c-----~~~~v~c~~~-----~~v~~l~l~~~~l~~~~~~~~l~~ 104 (353)
.+|..+|+.+|+++.. +.. .+|.+ ++| .|.|+.|... ..|+.++|+++.+.|.+|. .+..
T Consensus 371 ~~~~~aL~~~k~~~~~-~~~--~~W~g------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-~i~~ 440 (623)
T PLN03150 371 LEEVSALQTLKSSLGL-PLR--FGWNG------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISK 440 (623)
T ss_pred chHHHHHHHHHHhcCC-ccc--CCCCC------CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-HHhC
Confidence 6789999999999864 221 37862 344 7999999621 2488888888888888887 7888
Q ss_pred CCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCC-CCCCEE
Q 039642 105 FPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRL-SSLNGL 183 (353)
Q Consensus 105 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L 183 (353)
+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 8888888888888888888888888888888888888888888888888888888888888888887776543 355666
Q ss_pred EcccCcCC
Q 039642 184 NLYSNFLK 191 (353)
Q Consensus 184 ~l~~n~~~ 191 (353)
++.+|...
T Consensus 521 ~~~~N~~l 528 (623)
T PLN03150 521 NFTDNAGL 528 (623)
T ss_pred EecCCccc
Confidence 66666543
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.41 E-value=6.4e-15 Score=125.84 Aligned_cols=183 Identities=18% Similarity=0.197 Sum_probs=111.1
Q ss_pred CCCCCCEEEcccCcCCCCCccc----ccCCCCCCEEEcccCcCCcc-------------CCccCCCCCCccEEEcccCcc
Q 039642 152 YLTHLKLLSFSKNQLSGFIPHE----IGRLSSLNGLNLYSNFLKGS-------------IPPSLGNLTSLIYIDIGNNLL 214 (353)
Q Consensus 152 ~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~l~~n~~~~~-------------~~~~l~~l~~L~~L~l~~n~l 214 (353)
.+++|++++||+|.+....+.. +.++..|++|++.+|.+... .....+.-++|+.++...|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4456666666666555333322 23456666666666655311 111233456777787777776
Q ss_pred ccc----CCccCCCCCCCCEEEcccCCCccc----cCccccCCCCCCEEEcccCcCcCCc----chhccCCCCCCEEecc
Q 039642 215 SGS----IPNEVGNLKSLSDLRLDNNTLSGS----IPLSLGNLTKLGTLYLHTNALFGSI----PYEIGNLKSLSDLQLS 282 (353)
Q Consensus 215 ~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~l~ 282 (353)
... +...+...+.|+.+.++.|.+... +...+..+++|+.|||++|.|+... ...+..+++|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 532 223345567788888888876521 2234567788888888888775432 3445566778888888
Q ss_pred CCcCcccCCccc-----cCCCCCCeeeccCCccccc----CCccCcCCCCCCEEeCcCCcC
Q 039642 283 YNTLNGSIPFSL-----GNLTNLAILYIGINALSGS----IPNEIGNLKSLLDLRLDNNTL 334 (353)
Q Consensus 283 ~n~l~~~~~~~l-----~~~~~L~~L~ls~n~~~~~----~~~~~~~~~~L~~L~l~~n~l 334 (353)
+|.+.......+ ...|+|+.|.+.+|.++.. +..++...+.|..|+|++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 887764332221 2367888888888877642 223344567888888888887
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.37 E-value=6.1e-13 Score=122.85 Aligned_cols=176 Identities=38% Similarity=0.566 Sum_probs=84.4
Q ss_pred CCCCEEEcccCcCCCCCcccccCCC-CCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEE
Q 039642 154 THLKLLSFSKNQLSGFIPHEIGRLS-SLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLR 232 (353)
Q Consensus 154 ~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 232 (353)
+.++.+++.+|.+. .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|.+. .++...+..++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 44555555555544 3333333332 5555555555544 33334445555555555555554 2233233445555555
Q ss_pred cccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 233 LDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 233 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
+++|.+. .+|........|+++.+++|.. -..+..+.++.++..+.+.+|++. ..+..++.++++++|++++|.++
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~- 268 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS- 268 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-
Confidence 5555554 3443333344455555555532 122333444555555555555554 22344455555555555555555
Q ss_pred cCCccCcCCCCCCEEeCcCCcCccc
Q 039642 313 SIPNEIGNLKSLLDLRLDNNTLSGS 337 (353)
Q Consensus 313 ~~~~~~~~~~~L~~L~l~~n~l~~~ 337 (353)
.++. ++...+++.|++++|.++..
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccc-ccccCccCEEeccCcccccc
Confidence 2222 45555555555555555433
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=1.6e-14 Score=130.65 Aligned_cols=180 Identities=34% Similarity=0.507 Sum_probs=116.3
Q ss_pred CCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEE
Q 039642 129 LSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYID 208 (353)
Q Consensus 129 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 208 (353)
+..-...|++.|++. .+|..+..+-.|+.+.+..|.+. .+|..+.++..|++++++.|++. ..|..++.++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 334455667777776 66666666666777777777665 66667777777777777777766 5566665555 66677
Q ss_pred cccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcc
Q 039642 209 IGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNG 288 (353)
Q Consensus 209 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 288 (353)
+++|+++ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..+ .|..||+++|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence 7777666 55666666667777777777665 56666666667777777666663 344444433 4666777777666
Q ss_pred cCCccccCCCCCCeeeccCCcccccCCccC
Q 039642 289 SIPFSLGNLTNLAILYIGINALSGSIPNEI 318 (353)
Q Consensus 289 ~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~ 318 (353)
.+|..+..|..|++|-|.+|.+. ..|..+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 56666666677777777777666 334333
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=1.5e-12 Score=120.22 Aligned_cols=197 Identities=38% Similarity=0.555 Sum_probs=134.6
Q ss_pred EEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCC-CCCEEEcccCcCCCCCcccccCCCCCCEEEcccC
Q 039642 110 YLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLT-HLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSN 188 (353)
Q Consensus 110 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 188 (353)
.+++..+.+..... .+...+.++.+++.++.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 45666665532222 2344567788888888777 5555555553 7888888888877 55556777788888888888
Q ss_pred cCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcch
Q 039642 189 FLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPY 268 (353)
Q Consensus 189 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 268 (353)
.+. .+|......+.|+.|++++|.+. .+|...+....|+++.+++|... ..+..+..+.++..+.+.+|.+. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 877 44554446778888888888877 45554455566888888888544 35556677777777777777763 3355
Q ss_pred hccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCC
Q 039642 269 EIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIP 315 (353)
Q Consensus 269 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~ 315 (353)
.+..+++++.|++++|.++. ++. ++...++++|++++|.++...+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 66777778888888888873 333 6777888888888887765433
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=1.5e-13 Score=117.63 Aligned_cols=230 Identities=17% Similarity=0.159 Sum_probs=169.9
Q ss_pred CCCEEEEEeCCCCccee----cCcccccCCCCCCEEECCCC---CCcccCCc-------cCCCCCCCcEEeCCCCcCCCC
Q 039642 80 AGRVNSINLTSAGLKGT----LHDFSFSSFPHLGYLDLRIN---QFFGIIPP-------QIGNLSMLKFLGLSFNQFSGS 145 (353)
Q Consensus 80 ~~~v~~l~l~~~~l~~~----~~~~~l~~l~~L~~L~l~~n---~l~~~~~~-------~l~~l~~L~~L~l~~n~l~~~ 145 (353)
...++.|++++|.+... +.. .+++.++|+..++++- .....+|+ ++..+++|++++||+|-+...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~-~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAK-VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHH-HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34789999999998532 333 6778889999998864 22223443 455788999999999988744
Q ss_pred CCcC----CCCCCCCCEEEcccCcCCCCC-------------cccccCCCCCCEEEcccCcCCcc----CCccCCCCCCc
Q 039642 146 IPPE----IGYLTHLKLLSFSKNQLSGFI-------------PHEIGRLSSLNGLNLYSNFLKGS----IPPSLGNLTSL 204 (353)
Q Consensus 146 ~~~~----l~~l~~L~~L~L~~n~~~~~~-------------~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L 204 (353)
.+.. +..+..|++|.|.+|.+...- .+...+-++|+.+...+|++... +...+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 3333 456889999999999886221 12234557899999999988632 22345677899
Q ss_pred cEEEcccCccccc----CCccCCCCCCCCEEEcccCCCcc----ccCccccCCCCCCEEEcccCcCcCCcchhc-----c
Q 039642 205 IYIDIGNNLLSGS----IPNEVGNLKSLSDLRLDNNTLSG----SIPLSLGNLTKLGTLYLHTNALFGSIPYEI-----G 271 (353)
Q Consensus 205 ~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~ 271 (353)
+.+.+..|.+... +...+..+++|+.|++.+|.++. .+...+..+++|++|++++|.+.......+ .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 9999999987532 33457889999999999999874 344567788999999999999876554433 2
Q ss_pred CCCCCCEEeccCCcCccc----CCccccCCCCCCeeeccCCcc
Q 039642 272 NLKSLSDLQLSYNTLNGS----IPFSLGNLTNLAILYIGINAL 310 (353)
Q Consensus 272 ~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~ls~n~~ 310 (353)
..++|+.|.+.+|.++.. +.......+.|+.|+|++|++
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 368999999999998742 122345579999999999999
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=1.1e-12 Score=110.30 Aligned_cols=130 Identities=28% Similarity=0.315 Sum_probs=66.6
Q ss_pred CCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEE
Q 039642 200 NLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDL 279 (353)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 279 (353)
.+..|+++++++|.++ .+.+...-.|.++.|+++.|.+.. +. .++.+++|+.||+++|.++ .+..+-.++-+++.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3445555555555555 344444455555566666555542 21 2455555666666655553 222233344455666
Q ss_pred eccCCcCcccCCccccCCCCCCeeeccCCccccc-CCccCcCCCCCCEEeCcCCcCc
Q 039642 280 QLSYNTLNGSIPFSLGNLTNLAILYIGINALSGS-IPNEIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 280 ~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~ 335 (353)
.++.|.+.+. +.+..+-+|..||+++|+|... -...++++|.|+.+.+.+|++.
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6666655421 2344555566666666655431 1233555666666666666555
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=1.2e-13 Score=125.16 Aligned_cols=195 Identities=30% Similarity=0.415 Sum_probs=129.7
Q ss_pred CCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEE
Q 039642 105 FPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLN 184 (353)
Q Consensus 105 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 184 (353)
+..-...+++.|++. ++|..+..+-.|+.+.+..|.+. .+|..+.++..|.+++++.|+++ .+|..+..+ -|+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence 334445666667665 45655666666777777777776 66777777777777777777776 556566554 367777
Q ss_pred cccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcC
Q 039642 185 LYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFG 264 (353)
Q Consensus 185 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 264 (353)
+++|+++ .+|..++..+.|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+. .-.|..||++.|.+ .
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNki-s 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKI-S 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCce-e
Confidence 7777776 56667777777777777777776 45666777777777777777776 5666665 34567777777777 4
Q ss_pred CcchhccCCCCCCEEeccCCcCcccCCcccc---CCCCCCeeeccCCc
Q 039642 265 SIPYEIGNLKSLSDLQLSYNTLNGSIPFSLG---NLTNLAILYIGINA 309 (353)
Q Consensus 265 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~---~~~~L~~L~ls~n~ 309 (353)
.+|-.|.++..|++|-|.+|.+. ..|..+. ...-.++|+..-++
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 56667777777777777777776 3333332 22334566666663
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6e-13 Score=117.00 Aligned_cols=208 Identities=25% Similarity=0.240 Sum_probs=131.5
Q ss_pred CCCCCcEEeCCCCcCCCCCC--cCCCCCCCCCEEEcccCcCCCC--CcccccCCCCCCEEEcccCcCCccCCcc-CCCCC
Q 039642 128 NLSMLKFLGLSFNQFSGSIP--PEIGYLTHLKLLSFSKNQLSGF--IPHEIGRLSSLNGLNLYSNFLKGSIPPS-LGNLT 202 (353)
Q Consensus 128 ~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~ 202 (353)
++++|+.+.+.++.+. ..+ .....+++++.||++.|-+... +-.....+|+|+.|+++.|.+....... -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 5667888888777665 222 2455778888888888766531 2233456788888888888765222211 12456
Q ss_pred CccEEEcccCcccc-cCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCc-chhccCCCCCCEEe
Q 039642 203 SLIYIDIGNNLLSG-SIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSI-PYEIGNLKSLSDLQ 280 (353)
Q Consensus 203 ~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~ 280 (353)
.|+.|.++.|.++- .+...+..+|+|+.|.+..|.....-......++.|++|||++|.+.... ....+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 78888888887762 12233456788888888888422222233445677888888888764321 23456678888888
Q ss_pred ccCCcCccc-CCcc-----ccCCCCCCeeeccCCcccc-cCCccCcCCCCCCEEeCcCCcCcc
Q 039642 281 LSYNTLNGS-IPFS-----LGNLTNLAILYIGINALSG-SIPNEIGNLKSLLDLRLDNNTLSG 336 (353)
Q Consensus 281 l~~n~l~~~-~~~~-----l~~~~~L~~L~ls~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~ 336 (353)
++.+.+.+. .|+. ...+++|++|+++.|++.. .....+..+++|+.|.+..|+++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 888887642 2222 3567888888888888852 112235566778888888887763
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.24 E-value=1.6e-11 Score=119.04 Aligned_cols=109 Identities=39% Similarity=0.607 Sum_probs=73.2
Q ss_pred CCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccC
Q 039642 228 LSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGI 307 (353)
Q Consensus 228 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~ 307 (353)
++.|++++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++++.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666677777666666666777777777777777666666666677777777777777766666666777777777777
Q ss_pred CcccccCCccCcCC-CCCCEEeCcCCcCcc
Q 039642 308 NALSGSIPNEIGNL-KSLLDLRLDNNTLSG 336 (353)
Q Consensus 308 n~~~~~~~~~~~~~-~~L~~L~l~~n~l~~ 336 (353)
|.++|.+|..+... .++..+++.+|....
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 77777666665542 345566666665443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=5e-12 Score=101.32 Aligned_cols=126 Identities=29% Similarity=0.261 Sum_probs=38.3
Q ss_pred CCCCccEEEcccCcccccCCccCC-CCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCE
Q 039642 200 NLTSLIYIDIGNNLLSGSIPNEVG-NLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSD 278 (353)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 278 (353)
+..++++|++.+|.++. +. .++ .+.+|+.|++++|.++. + +.+..++.|++|++++|.++...+.....+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 44566777777777763 22 343 45677777777777763 2 24555677777777777775432222234667777
Q ss_pred EeccCCcCcccC-CccccCCCCCCeeeccCCcccccCC---ccCcCCCCCCEEeC
Q 039642 279 LQLSYNTLNGSI-PFSLGNLTNLAILYIGINALSGSIP---NEIGNLKSLLDLRL 329 (353)
Q Consensus 279 L~l~~n~l~~~~-~~~l~~~~~L~~L~ls~n~~~~~~~---~~~~~~~~L~~L~l 329 (353)
|++++|++.+.- -..+..+++|+.|++.+|.++...- ..+..+|+|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777777765311 1245566777777777776663211 12344566666654
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.1e-12 Score=113.63 Aligned_cols=199 Identities=23% Similarity=0.254 Sum_probs=141.4
Q ss_pred CCCCCCCEEEcccCcCCCCCc--ccccCCCCCCEEEcccCcCCcc--CCccCCCCCCccEEEcccCcccccCCc-cCCCC
Q 039642 151 GYLTHLKLLSFSKNQLSGFIP--HEIGRLSSLNGLNLYSNFLKGS--IPPSLGNLTSLIYIDIGNNLLSGSIPN-EVGNL 225 (353)
Q Consensus 151 ~~l~~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~ 225 (353)
+++.+|+.+.+.++... ..+ .....|++++.|+++.|-+..- +......+|+|+.|+++.|.+.-.... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 56788999999998876 222 2456789999999999987622 223456789999999999997632221 12367
Q ss_pred CCCCEEEcccCCCcc-ccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccC-CccccCCCCCCee
Q 039642 226 KSLSDLRLDNNTLSG-SIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSI-PFSLGNLTNLAIL 303 (353)
Q Consensus 226 ~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L 303 (353)
+.|+.|.++.|+++- .+...+..+|+|+.|++..|...........-+..|++|||++|++-+.- ....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 899999999999973 33344566899999999999532222223344578999999999987321 2456889999999
Q ss_pred eccCCccccc-CCcc-----CcCCCCCCEEeCcCCcCccccC--ccccCCCCCCee
Q 039642 304 YIGINALSGS-IPNE-----IGNLKSLLDLRLDNNTLSGSIP--LSLGNLTKLVTL 351 (353)
Q Consensus 304 ~ls~n~~~~~-~~~~-----~~~~~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L 351 (353)
+++.+++... .|+. ...+++|+.|+++.|++. .++ ..+..+++|+.|
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHL 331 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhh
Confidence 9999998863 2332 356799999999999996 333 233344444443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=7.5e-12 Score=105.33 Aligned_cols=202 Identities=22% Similarity=0.192 Sum_probs=133.2
Q ss_pred cccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCc---CCCCCcccccCC
Q 039642 101 SFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQ---LSGFIPHEIGRL 177 (353)
Q Consensus 101 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~---~~~~~~~~l~~l 177 (353)
.+.-+++|..+.++.+.-..+. .....-|.|+++...+..+. ..|. +- |.-...|..+-. ..|.........
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~-~~~~-l~--pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQ-DVPS-LL--PETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred chHHhhhhheeeeeccchhhee-ceeecCchhheeeeeccccc-cccc-cc--chhhhcCccCCCCCccCCceEEecchH
Confidence 6667778888888776432211 11122356777776655443 1121 11 111112222211 112222333445
Q ss_pred CCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 039642 178 SSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYL 257 (353)
Q Consensus 178 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 257 (353)
..|+.+++++|.++ .+.++..-.|+++.|++++|.+... +.+..+++|++||+++|.++. +...-.++.+++.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 67899999999887 5667777789999999999998743 347888999999999998873 3333346778999999
Q ss_pred ccCcCcCCcchhccCCCCCCEEeccCCcCcc-cCCccccCCCCCCeeeccCCccccc
Q 039642 258 HTNALFGSIPYEIGNLKSLSDLQLSYNTLNG-SIPFSLGNLTNLAILYIGINALSGS 313 (353)
Q Consensus 258 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~ls~n~~~~~ 313 (353)
++|.+.. .+.+.++-+|..||+++|++.. .-...++++|.|+.+.+.+|.+.+.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9998732 2456777889999999999873 1123688999999999999999853
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=6.3e-11 Score=94.97 Aligned_cols=125 Identities=30% Similarity=0.370 Sum_probs=31.3
Q ss_pred CCCCCCEEEcccCcCCccCCccCC-CCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccc-cCCCCCC
Q 039642 176 RLSSLNGLNLYSNFLKGSIPPSLG-NLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTKLG 253 (353)
Q Consensus 176 ~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~ 253 (353)
+..+++.|++.+|.++. + +.++ .+.+|+.|++++|.++. + +.+..++.|+.|++++|.++. +...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 33445555555555542 1 2233 34555555555555552 2 134455555555555555552 22222 2345555
Q ss_pred EEEcccCcCcCC-cchhccCCCCCCEEeccCCcCcccCC---ccccCCCCCCeeec
Q 039642 254 TLYLHTNALFGS-IPYEIGNLKSLSDLQLSYNTLNGSIP---FSLGNLTNLAILYI 305 (353)
Q Consensus 254 ~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~l 305 (353)
+|++++|.+... .-..+..+++|+.|++.+|.++...- ..+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 555555555321 11234445555555555555543211 12344555555543
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=1e-10 Score=116.11 Aligned_cols=109 Identities=32% Similarity=0.378 Sum_probs=68.9
Q ss_pred CCCCCCEEECCCCC--CcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCC
Q 039642 104 SFPHLGYLDLRINQ--FFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLN 181 (353)
Q Consensus 104 ~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 181 (353)
..+.|++|-+.+|. +.....+.|..++.|++||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..+.++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 33456666666664 33333444666777777777766555567777777777777777777766 6667777777777
Q ss_pred EEEcccCcCCccCCccCCCCCCccEEEcccCc
Q 039642 182 GLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNL 213 (353)
Q Consensus 182 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 213 (353)
+|++..+.....+|.....+++|++|.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 77776665544444445556677776665443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=6e-10 Score=73.57 Aligned_cols=61 Identities=39% Similarity=0.470 Sum_probs=44.4
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcC
Q 039642 274 KSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTL 334 (353)
Q Consensus 274 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l 334 (353)
|+|++|++++|+++...+..+..+++|++|++++|.++...+..|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777755555677777777777777777766667777777777777777764
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=9.3e-11 Score=108.72 Aligned_cols=85 Identities=29% Similarity=0.331 Sum_probs=43.6
Q ss_pred CCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCccccc---CCcc-CcCCCCCCEE
Q 039642 252 LGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGS---IPNE-IGNLKSLLDL 327 (353)
Q Consensus 252 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~---~~~~-~~~~~~L~~L 327 (353)
|+.+++++|++.. .+..+..+..+..|++.+|.+... ..+...+.+..+....|.+... .... ....++++.+
T Consensus 234 L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 5566666666532 223344455666666666655532 1233344555555555554421 1111 3455677777
Q ss_pred eCcCCcCccccC
Q 039642 328 RLDNNTLSGSIP 339 (353)
Q Consensus 328 ~l~~n~l~~~~p 339 (353)
.+..|++....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 777777665443
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=1.8e-09 Score=107.45 Aligned_cols=107 Identities=28% Similarity=0.334 Sum_probs=88.8
Q ss_pred CEEEEEeCCCCc-ceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 82 RVNSINLTSAGL-KGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 82 ~v~~l~l~~~~l-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.++.+-+..+.. ...++...|..++.|+.||+++|.-.+.+|..++++-+||+|+++++.+. .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 566777776652 22344435889999999999998877889999999999999999999999 8999999999999999
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCc
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNF 189 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 189 (353)
+..+.....+|.....+++|++|.+....
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccc
Confidence 99988765666666779999999987654
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=1.6e-10 Score=107.09 Aligned_cols=218 Identities=29% Similarity=0.355 Sum_probs=144.0
Q ss_pred CCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEE
Q 039642 104 SFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGL 183 (353)
Q Consensus 104 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 183 (353)
.+..++.+.+..|.+.. +-..+..+.+|+.+++.+|.+. .+...+..+++|++|++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 45566666777777664 2334677888888888888887 3333367788888888888888744 245666778888
Q ss_pred EcccCcCCccCCccCCCCCCccEEEcccCcccccCC-ccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcC
Q 039642 184 NLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIP-NEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNAL 262 (353)
Q Consensus 184 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 262 (353)
++.+|.+.. ...+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.. ...+.....+..+++..|.+
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccc
Confidence 888888862 2345557888888888888775433 1 4677788888888887762 22333344455557777776
Q ss_pred cCCcchhccCCC--CCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCc
Q 039642 263 FGSIPYEIGNLK--SLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 263 ~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 335 (353)
+..-+ +.... +|+.+++++|.+. ..+..+..+..+..+++++|++...- .+...+.+..+....|++.
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 43322 22222 3788888888887 33355667788888888888876432 2344556666666666655
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.8e-09 Score=71.21 Aligned_cols=61 Identities=36% Similarity=0.408 Sum_probs=38.9
Q ss_pred CCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcc
Q 039642 250 TKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINAL 310 (353)
Q Consensus 250 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~ 310 (353)
++|++|++++|.++...+..+.++++|++|++++|.++...+..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666544445666666677777776666655555666667777777776654
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.65 E-value=1.6e-09 Score=90.29 Aligned_cols=135 Identities=21% Similarity=0.157 Sum_probs=65.9
Q ss_pred CCCccEEEcccCcccccCC----ccCCCCCCCCEEEcccCCCcccc-----CccccCCCCCCEEEcccCcCcCCc----c
Q 039642 201 LTSLIYIDIGNNLLSGSIP----NEVGNLKSLSDLRLDNNTLSGSI-----PLSLGNLTKLGTLYLHTNALFGSI----P 267 (353)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~----~ 267 (353)
-|.|+.+....|++..... ..+..-.+|+.+.+..|.+.... -..+..+++|+.||+++|.++-.. .
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 3556666666665542100 11222245666666666654210 012234566666666666664332 2
Q ss_pred hhccCCCCCCEEeccCCcCcccCCccc------cCCCCCCeeeccCCcccccCCccC-------cCCCCCCEEeCcCCcC
Q 039642 268 YEIGNLKSLSDLQLSYNTLNGSIPFSL------GNLTNLAILYIGINALSGSIPNEI-------GNLKSLLDLRLDNNTL 334 (353)
Q Consensus 268 ~~l~~~~~L~~L~l~~n~l~~~~~~~l------~~~~~L~~L~ls~n~~~~~~~~~~-------~~~~~L~~L~l~~n~l 334 (353)
..+..++.|++|.+.+|-++......+ ...|+|..|-..+|.+.+.+...+ ..+|-|..|.+.+|++
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 233344556666666665543222111 124566666666665554332221 2345566666666665
Q ss_pred c
Q 039642 335 S 335 (353)
Q Consensus 335 ~ 335 (353)
.
T Consensus 316 ~ 316 (388)
T COG5238 316 K 316 (388)
T ss_pred h
Confidence 4
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=4.5e-09 Score=88.70 Aligned_cols=110 Identities=25% Similarity=0.132 Sum_probs=63.9
Q ss_pred CCCCCCEEECCCCCCccc--CCccCCCCCCCcEEeCCCCcCCC--CCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCC
Q 039642 104 SFPHLGYLDLRINQFFGI--IPPQIGNLSMLKFLGLSFNQFSG--SIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSS 179 (353)
Q Consensus 104 ~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 179 (353)
....++.+.+.++.+..+ ....-..+..++.+|+.+|.++. .+-..+.++|.|++|+|+.|.+...+...-....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 334455566666655432 11111245678888888887762 22233567888888888888776433221134567
Q ss_pred CCEEEcccCcCCcc-CCccCCCCCCccEEEcccCc
Q 039642 180 LNGLNLYSNFLKGS-IPPSLGNLTSLIYIDIGNNL 213 (353)
Q Consensus 180 L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~ 213 (353)
|+.|.+.+..+... ....+..+|.+++|+++.|.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 78888777765422 12234556667777777664
No 45
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.57 E-value=1e-07 Score=57.63 Aligned_cols=42 Identities=36% Similarity=0.879 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccceeeeC
Q 039642 35 TEEAHALLKWKTSLQNQNGSLLPSWTLNNPTKISPCTWFGIHCN 78 (353)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~~~v~c~ 78 (353)
++|+++|++||+++..++...+.+|+... ..++|.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~--~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS--DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT----S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC--CCCCeeeccEEeC
Confidence 67999999999999976778899998221 3799999999995
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.57 E-value=5.6e-09 Score=87.04 Aligned_cols=231 Identities=19% Similarity=0.128 Sum_probs=162.2
Q ss_pred CCEEEEEeCCCCccee----cCcccccCCCCCCEEECCCCCC---cccCC-------ccCCCCCCCcEEeCCCCcCCCCC
Q 039642 81 GRVNSINLTSAGLKGT----LHDFSFSSFPHLGYLDLRINQF---FGIIP-------PQIGNLSMLKFLGLSFNQFSGSI 146 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~----~~~~~l~~l~~L~~L~l~~n~l---~~~~~-------~~l~~l~~L~~L~l~~n~l~~~~ 146 (353)
..++.++|++|.+... +.. .+++-++|+..+++.-.. .+.++ .++-+||+|+.+++++|.+....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~-~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCN-VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHH-HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4688999999998643 333 567778899888876422 22222 34668999999999999988666
Q ss_pred CcC----CCCCCCCCEEEcccCcCCCC----Cccc---------ccCCCCCCEEEcccCcCCccCC----ccCCCCCCcc
Q 039642 147 PPE----IGYLTHLKLLSFSKNQLSGF----IPHE---------IGRLSSLNGLNLYSNFLKGSIP----PSLGNLTSLI 205 (353)
Q Consensus 147 ~~~----l~~l~~L~~L~L~~n~~~~~----~~~~---------l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~ 205 (353)
|+. ++....|++|.+++|.+... +..+ ..+-|.|+......|++..... ..+.....|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 543 46678899999999987622 2222 2345889999999998762111 1233346889
Q ss_pred EEEcccCccccc-----CCccCCCCCCCCEEEcccCCCcc----ccCccccCCCCCCEEEcccCcCcCCcchhc------
Q 039642 206 YIDIGNNLLSGS-----IPNEVGNLKSLSDLRLDNNTLSG----SIPLSLGNLTKLGTLYLHTNALFGSIPYEI------ 270 (353)
Q Consensus 206 ~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l------ 270 (353)
++.+..|.+... +-..+..+.+|+.|++.+|.++- .+...+..++.|+.|.+.+|-++......+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 999999887632 11234567899999999999873 233455667889999999998876544332
Q ss_pred cCCCCCCEEeccCCcCcccCCcc-------ccCCCCCCeeeccCCcccc
Q 039642 271 GNLKSLSDLQLSYNTLNGSIPFS-------LGNLTNLAILYIGINALSG 312 (353)
Q Consensus 271 ~~~~~L~~L~l~~n~l~~~~~~~-------l~~~~~L~~L~ls~n~~~~ 312 (353)
...++|..|...+|.+.+.+... -.++|-|..|.+.+|++..
T Consensus 269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 23588999999999876533222 1457889999999999874
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=6.7e-09 Score=87.66 Aligned_cols=85 Identities=26% Similarity=0.239 Sum_probs=43.0
Q ss_pred CCCCCCEEECCCCCCcc--cCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCC-CCcccccCCCCC
Q 039642 104 SFPHLGYLDLRINQFFG--IIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSG-FIPHEIGRLSSL 180 (353)
Q Consensus 104 ~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L 180 (353)
.++.++.+++.+|.+++ ++...+.++|.|++|+++.|.+...+-.--....+|++|-|.++.+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34556666666666543 233334556666666666666552221111233456666666655442 122234455566
Q ss_pred CEEEcccC
Q 039642 181 NGLNLYSN 188 (353)
Q Consensus 181 ~~L~l~~n 188 (353)
+.|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 66666555
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.7e-10 Score=95.91 Aligned_cols=177 Identities=16% Similarity=0.143 Sum_probs=106.4
Q ss_pred CCCEEEcccCcCCC-CCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCc-cccc-CCccCCCCCCCCEE
Q 039642 155 HLKLLSFSKNQLSG-FIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNL-LSGS-IPNEVGNLKSLSDL 231 (353)
Q Consensus 155 ~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L 231 (353)
.|+++||+...++. .+-.-++.|.+|+.|.+.++++.+.+...++...+|+.++++.+. ++.. ..-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777887776652 222335667778888888887776666667777778888887664 3211 11234667778888
Q ss_pred EcccCCCcccc-CccccC-CCCCCEEEcccCcC---cCCcchhccCCCCCCEEeccCCcC-cccCCccccCCCCCCeeec
Q 039642 232 RLDNNTLSGSI-PLSLGN-LTKLGTLYLHTNAL---FGSIPYEIGNLKSLSDLQLSYNTL-NGSIPFSLGNLTNLAILYI 305 (353)
Q Consensus 232 ~l~~n~~~~~~-~~~~~~-l~~L~~L~L~~n~l---~~~~~~~l~~~~~L~~L~l~~n~l-~~~~~~~l~~~~~L~~L~l 305 (353)
++++|.+.... ...+.+ -++|+.|+++++.- ...+..-..++++|.+|||++|.. +......+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88887765321 111121 25677777777541 112222234677788888887643 3323334566777888887
Q ss_pred cCCcccccCCcc---CcCCCCCCEEeCcCCc
Q 039642 306 GINALSGSIPNE---IGNLKSLLDLRLDNNT 333 (353)
Q Consensus 306 s~n~~~~~~~~~---~~~~~~L~~L~l~~n~ 333 (353)
+.|.. .+|+. +...|.|.+||+.++-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 77754 34443 3556777777777653
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=7.9e-10 Score=103.44 Aligned_cols=180 Identities=29% Similarity=0.265 Sum_probs=113.1
Q ss_pred CccCCCCCCCcEEeCCCCcCCCCCCcCCCCC-CCCCEEEcccCcCC----------CCCcccccCCCCCCEEEcccCcCC
Q 039642 123 PPQIGNLSMLKFLGLSFNQFSGSIPPEIGYL-THLKLLSFSKNQLS----------GFIPHEIGRLSSLNGLNLYSNFLK 191 (353)
Q Consensus 123 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~~~----------~~~~~~l~~l~~L~~L~l~~n~~~ 191 (353)
|-.+..+.+|++|.+.++.+.. . ..+..+ ..|++|...+ .++ +.+..++ ....|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 5566778888888888887762 1 111111 2344443322 221 1111111 1236777777888776
Q ss_pred ccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhcc
Q 039642 192 GSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIG 271 (353)
Q Consensus 192 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 271 (353)
.+..++.-++.++.|++++|+++..- .+..+++|++||++.|.+. .+|..=..-..|..|.+++|.++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHH
Confidence 55666777788888888888887542 6777888888888888887 4443211223488888888877432 2456
Q ss_pred CCCCCCEEeccCCcCcccC-CccccCCCCCCeeeccCCcccc
Q 039642 272 NLKSLSDLQLSYNTLNGSI-PFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 272 ~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
++.+|+.||+++|-+.+.- -..+..+..|+.|.|.+|.+..
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 7788888888888776421 1234556778888888887763
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.9e-10 Score=94.42 Aligned_cols=203 Identities=20% Similarity=0.156 Sum_probs=130.7
Q ss_pred CEEEEEeCCCCccee-cCcccccCC-CCCCEEECCCCCCccc-CCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCE
Q 039642 82 RVNSINLTSAGLKGT-LHDFSFSSF-PHLGYLDLRINQFFGI-IPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKL 158 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~-~~~~~l~~l-~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 158 (353)
.|..+.+...-+... +.+ .+.-+ ..|+++|++...++.. .-..+..|.+|+.|.+.++.+.+.+...+..-.+|+.
T Consensus 160 gV~v~Rlar~~~~~prlae-~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQPRLAE-HFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CeEEEEcchhhhcCchhhh-hhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 466666654433322 222 22222 2588888888777643 2334567888888888888888777777777788888
Q ss_pred EEcccCc-CCCC-CcccccCCCCCCEEEcccCcCCccCCccC-CC-CCCccEEEcccCccc---ccCCccCCCCCCCCEE
Q 039642 159 LSFSKNQ-LSGF-IPHEIGRLSSLNGLNLYSNFLKGSIPPSL-GN-LTSLIYIDIGNNLLS---GSIPNEVGNLKSLSDL 231 (353)
Q Consensus 159 L~L~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~-l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L 231 (353)
|+++.+. ++.. ..--+.+|+.|..|+++.|.+.......+ .+ -++|+.|+++++.-. ..+......+++|.+|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 8888764 3211 11125678888889998887653332211 11 257888888876421 1122234578899999
Q ss_pred EcccCCC-ccccCccccCCCCCCEEEcccCcCcCCcchhc---cCCCCCCEEeccCCcCc
Q 039642 232 RLDNNTL-SGSIPLSLGNLTKLGTLYLHTNALFGSIPYEI---GNLKSLSDLQLSYNTLN 287 (353)
Q Consensus 232 ~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~~~~L~~L~l~~n~l~ 287 (353)
|+++|.. +......+.+++.|++|.++.|. +.+|+.+ ...|+|.+|++.++--.
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccccCc
Confidence 9998764 33444567778899999999886 4555543 55688999998887433
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=1.4e-09 Score=101.85 Aligned_cols=177 Identities=28% Similarity=0.237 Sum_probs=123.6
Q ss_pred cccCCCCCCEEECCCCCCcccCCccCCCC-CCCcEEeCCCCcCC----------CCCCcCCCCCCCCCEEEcccCcCCCC
Q 039642 101 SFSSFPHLGYLDLRINQFFGIIPPQIGNL-SMLKFLGLSFNQFS----------GSIPPEIGYLTHLKLLSFSKNQLSGF 169 (353)
Q Consensus 101 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~----------~~~~~~l~~l~~L~~L~L~~n~~~~~ 169 (353)
.+..+..|++|.+.++.+... ..+..+ .+|++|...+ .+. |.+...+ ..-.|.+.+.++|.+. .
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-L 178 (1096)
T ss_pred eeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-h
Confidence 677889999999999987531 111111 1344443322 111 1111111 1235778888899887 5
Q ss_pred CcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCC
Q 039642 170 IPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNL 249 (353)
Q Consensus 170 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 249 (353)
+..++.-++.|+.|+|++|+++.. +.+..+++|++||+++|.+. .+|..-..-.+|+.|.+.+|.++. ...+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t--L~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT--LRGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh--hhhHHhh
Confidence 666788889999999999999743 37889999999999999988 445433233359999999999873 2356788
Q ss_pred CCCCEEEcccCcCcCCc-chhccCCCCCCEEeccCCcCc
Q 039642 250 TKLGTLYLHTNALFGSI-PYEIGNLKSLSDLQLSYNTLN 287 (353)
Q Consensus 250 ~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~ 287 (353)
.+|+.||+++|-+.+.- -..++.+..|+.|.|.+|.+-
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999999999876532 234566778999999999886
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=3.7e-08 Score=73.85 Aligned_cols=83 Identities=25% Similarity=0.274 Sum_probs=38.4
Q ss_pred CccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEecc
Q 039642 203 SLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLS 282 (353)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 282 (353)
.|+..++++|.+....++...+++.++.|++++|.+. .+|..+..++.|+.|+++.|.+ ...|..+..+.++..|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcc-ccchHHHHHHHhHHHhcCC
Confidence 3444455555544322222233344555555555554 3444455555555555555554 2333334344445555555
Q ss_pred CCcCc
Q 039642 283 YNTLN 287 (353)
Q Consensus 283 ~n~l~ 287 (353)
+|.+.
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55444
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=2.2e-06 Score=51.94 Aligned_cols=36 Identities=39% Similarity=0.576 Sum_probs=17.6
Q ss_pred CCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCc
Q 039642 299 NLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 299 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 335 (353)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33333555555555555555555
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=1.1e-07 Score=71.39 Aligned_cols=136 Identities=22% Similarity=0.286 Sum_probs=85.7
Q ss_pred ccEEEcccCcccc--cCCccCCCCCCCCEEEcccCCCccccCccc-cCCCCCCEEEcccCcCcCCcchhccCCCCCCEEe
Q 039642 204 LIYIDIGNNLLSG--SIPNEVGNLKSLSDLRLDNNTLSGSIPLSL-GNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQ 280 (353)
Q Consensus 204 L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 280 (353)
+..++++.|.+.- ..+..+.....|+..++++|.+. .+|..| ...+.++.|++++|.+ ..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcc
Confidence 3345555554431 11223445556777788888887 344433 4456788888888887 45666788888888888
Q ss_pred ccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCcccc
Q 039642 281 LSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLG 343 (353)
Q Consensus 281 l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 343 (353)
++.|.+. ..|..+..+.++..|+..+|.+. .+|.++-.-...-..++.++++.+.-+..++
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 8888887 45555666778888888888776 5555443333334445566677666655443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=5.3e-06 Score=50.22 Aligned_cols=36 Identities=39% Similarity=0.588 Sum_probs=18.7
Q ss_pred CCCEEeccCCcCcccCCccccCCCCCCeeeccCCccc
Q 039642 275 SLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALS 311 (353)
Q Consensus 275 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~ 311 (353)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33434555555666666655555
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=3.9e-05 Score=69.50 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=41.1
Q ss_pred ccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCC
Q 039642 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLN 181 (353)
Q Consensus 102 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 181 (353)
+..+++++.|++++|.++. +|. + -++|++|.++++.--..+|..+ .++|++|++++|.....+| ..|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 4456778888888876653 331 1 1257777777653322445433 2467777777663221333 2455
Q ss_pred EEEcccCc
Q 039642 182 GLNLYSNF 189 (353)
Q Consensus 182 ~L~l~~n~ 189 (353)
.|++..+.
T Consensus 116 ~L~L~~n~ 123 (426)
T PRK15386 116 SLEIKGSA 123 (426)
T ss_pred eEEeCCCC
Confidence 55555433
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.95 E-value=1.8e-05 Score=63.61 Aligned_cols=104 Identities=23% Similarity=0.180 Sum_probs=67.9
Q ss_pred CCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccC-CccccCCCCCCeee
Q 039642 226 KSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSI-PFSLGNLTNLAILY 304 (353)
Q Consensus 226 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ 304 (353)
.....+|+++|.+.. ...|..++.|.+|.+.+|+++..-|.--..+++|+.|.+.+|.+.... -..+..+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 355677788777752 234666778888888888887666654455677888888888776311 12356677888888
Q ss_pred ccCCcccccCC---ccCcCCCCCCEEeCcC
Q 039642 305 IGINALSGSIP---NEIGNLKSLLDLRLDN 331 (353)
Q Consensus 305 ls~n~~~~~~~---~~~~~~~~L~~L~l~~ 331 (353)
+-+|.++..-- ..+..+|+|+.||...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88777764221 2345677777777764
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=4.5e-05 Score=69.10 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=79.3
Q ss_pred CCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCcc
Q 039642 126 IGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLI 205 (353)
Q Consensus 126 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 205 (353)
+..+.+++.|++++|.++ .+|. -..+|++|.++++.-...+|..+. ++|+.|++++|.....+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 445688999999999877 5562 234699999988654445665442 5888888888732223443 466
Q ss_pred EEEcccCccc--ccCCccCCCCCCCCEEEcccCCCcc--ccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEec
Q 039642 206 YIDIGNNLLS--GSIPNEVGNLKSLSDLRLDNNTLSG--SIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQL 281 (353)
Q Consensus 206 ~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 281 (353)
.|++.++... +.+| ++|+.|.+.++.... ..+.. -.++|++|++++|... ..|..+. .+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 6777655432 1222 246666664432110 11111 1256778888777653 2333332 47777777
Q ss_pred cCC
Q 039642 282 SYN 284 (353)
Q Consensus 282 ~~n 284 (353)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 765
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=3.7e-05 Score=61.83 Aligned_cols=104 Identities=20% Similarity=0.180 Sum_probs=63.1
Q ss_pred CCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccC-CccCCCCCCCCEEE
Q 039642 154 THLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSI-PNEVGNLKSLSDLR 232 (353)
Q Consensus 154 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~ 232 (353)
.+...+|+++|.+... ..|..++.|.+|.+++|.++...|.--.-+++|..|.+.+|++.... -.-+..+|.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4566777777776522 24556677777777777777555544445566777777777765211 12355667777777
Q ss_pred cccCCCccc---cCccccCCCCCCEEEccc
Q 039642 233 LDNNTLSGS---IPLSLGNLTKLGTLYLHT 259 (353)
Q Consensus 233 l~~n~~~~~---~~~~~~~l~~L~~L~L~~ 259 (353)
+-+|+++.. -.-.+..+++|+.||++.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 777766521 112345566777777654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=6.5e-06 Score=80.37 Aligned_cols=112 Identities=19% Similarity=0.170 Sum_probs=56.7
Q ss_pred CCCccEEEcccCcccc-cCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcC-CcchhccCCCCCCE
Q 039642 201 LTSLIYIDIGNNLLSG-SIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFG-SIPYEIGNLKSLSD 278 (353)
Q Consensus 201 l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~ 278 (353)
+|.|+.|.+++-.+.. .+.....++++|..||+++++++.. ..++.+++|++|.+.+=.+.. ..-..+.++++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4555555555544321 1222334556666666666666522 345556666666665544432 12224455666666
Q ss_pred EeccCCcCcccC------CccccCCCCCCeeeccCCcccccC
Q 039642 279 LQLSYNTLNGSI------PFSLGNLTNLAILYIGINALSGSI 314 (353)
Q Consensus 279 L~l~~n~l~~~~------~~~l~~~~~L~~L~ls~n~~~~~~ 314 (353)
||+|........ -+.-..+|+|+.||.|++.+.+.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 666665443211 001123566777777766666543
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.78 E-value=1.8e-07 Score=82.59 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=63.6
Q ss_pred CCCEEEEEeCCCCcceecCcc-cccCCCCCCEEECCCCC-CcccCCccC-CCCCCCcEEeCCCCc-CCCCCCc-CCCCCC
Q 039642 80 AGRVNSINLTSAGLKGTLHDF-SFSSFPHLGYLDLRINQ-FFGIIPPQI-GNLSMLKFLGLSFNQ-FSGSIPP-EIGYLT 154 (353)
Q Consensus 80 ~~~v~~l~l~~~~l~~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~-l~~~~~~-~l~~l~ 154 (353)
.++++++++.++.-.+.-+.. ...++|++++|.+.++. +++..-..+ ..+++|+++++..|. ++...-. .-..++
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 367888888887654432221 34578899999888874 444322223 357888888888753 3322111 224678
Q ss_pred CCCEEEcccCc-CCCC-CcccccCCCCCCEEEcccC
Q 039642 155 HLKLLSFSKNQ-LSGF-IPHEIGRLSSLNGLNLYSN 188 (353)
Q Consensus 155 ~L~~L~L~~n~-~~~~-~~~~l~~l~~L~~L~l~~n 188 (353)
+|++++++++. +.+. +.....++..++.+.+.+|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 88899888875 2221 1122344455555555544
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.76 E-value=0.00016 Score=55.28 Aligned_cols=123 Identities=21% Similarity=0.197 Sum_probs=49.9
Q ss_pred cCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCC
Q 039642 221 EVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNL 300 (353)
Q Consensus 221 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 300 (353)
.+.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......+.++++++.+.+.. .+.......+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 345555666666553 333233344555556666666553 3333333455555677777754 3332333345556777
Q ss_pred CeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCC
Q 039642 301 AILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLV 349 (353)
Q Consensus 301 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 349 (353)
+.+++..+ +.......+.++ +|+.+.+.. .++......|.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 77777654 443444455565 777777665 33334445666666654
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=6.5e-06 Score=80.37 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=97.0
Q ss_pred CCccEEEcccCccc-ccCCcc-CCCCCCCCEEEcccCCCcc-ccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCE
Q 039642 202 TSLIYIDIGNNLLS-GSIPNE-VGNLKSLSDLRLDNNTLSG-SIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSD 278 (353)
Q Consensus 202 ~~L~~L~l~~n~l~-~~~~~~-~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 278 (353)
.+|++|++++...- ...+.. -..+|+|+.|.+.+-.+.. .+.....++++|..||+++.+++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666664321 112222 2457999999999877643 3344556789999999999998544 67889999999
Q ss_pred EeccCCcCcc-cCCccccCCCCCCeeeccCCcccccC------CccCcCCCCCCEEeCcCCcCccccCccc
Q 039642 279 LQLSYNTLNG-SIPFSLGNLTNLAILYIGINALSGSI------PNEIGNLKSLLDLRLDNNTLSGSIPLSL 342 (353)
Q Consensus 279 L~l~~n~l~~-~~~~~l~~~~~L~~L~ls~n~~~~~~------~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 342 (353)
|.+.+=.+.. .--..+.++++|+.||+|..+..... .+.-..+|+|+.||.|++.+.+..-+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 9999877763 11235678999999999987655321 1223458999999999998876655443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.72 E-value=0.00013 Score=55.83 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=20.4
Q ss_pred cccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcc
Q 039642 101 SFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFS 162 (353)
Q Consensus 101 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 162 (353)
.|.++++|+.+.+.. .+.......|.++++|+.+.+.++ +...-...|.++++++.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 444444555555442 233233334444444555554442 322222334444444444443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.49 E-value=4.8e-05 Score=63.66 Aligned_cols=88 Identities=24% Similarity=0.206 Sum_probs=50.1
Q ss_pred cCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccC--cCcCCcchhccCCCCCCEEeccCCcCcccCCc---ccc
Q 039642 221 EVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTN--ALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPF---SLG 295 (353)
Q Consensus 221 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~---~l~ 295 (353)
....+.+|+.+.+.+..++. + ..+..+++|+.|.++.| +..+.++--...+++|+++++++|++.. +. .+.
T Consensus 38 l~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~ 113 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLK 113 (260)
T ss_pred ccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhh
Confidence 33445566666666666552 1 23445667777777777 4444444334445777777777776652 11 234
Q ss_pred CCCCCCeeeccCCcccc
Q 039642 296 NLTNLAILYIGINALSG 312 (353)
Q Consensus 296 ~~~~L~~L~ls~n~~~~ 312 (353)
.+++|..|++.+|..+.
T Consensus 114 ~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhcchhhhhcccCCccc
Confidence 45566667776665554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=0.00015 Score=60.85 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=26.7
Q ss_pred CCCCccEEEcccC--cccccCCccCCCCCCCCEEEcccCCCcc-ccCccccCCCCCCEEEcccCcC
Q 039642 200 NLTSLIYIDIGNN--LLSGSIPNEVGNLKSLSDLRLDNNTLSG-SIPLSLGNLTKLGTLYLHTNAL 262 (353)
Q Consensus 200 ~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l 262 (353)
.+++|++|.++.| +..+.++.....+++|+++++++|++.. .-...+..+.+|..|++.+|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 3444444444444 3333333333344555555555555441 0011223334445555555544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=9.1e-06 Score=68.48 Aligned_cols=98 Identities=27% Similarity=0.250 Sum_probs=66.0
Q ss_pred CCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCc--cCcCCCCCCEE
Q 039642 250 TKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPN--EIGNLKSLLDL 327 (353)
Q Consensus 250 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~--~~~~~~~L~~L 327 (353)
.+.+.|+..+|.+..+ ....+++.|+.|.|+-|+++..- .+..|++|++|+|..|.|.. +.+ -+.++|+|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 4556677777776433 23456778888888888887432 36677888888888887763 221 24567888888
Q ss_pred eCcCCcCccccCcc-----ccCCCCCCeee
Q 039642 328 RLDNNTLSGSIPLS-----LGNLTKLVTLY 352 (353)
Q Consensus 328 ~l~~n~l~~~~p~~-----~~~l~~L~~L~ 352 (353)
.|..|+-.|..+.. +..+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888777666543 45677777775
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.77 E-value=7.6e-05 Score=70.77 Aligned_cols=111 Identities=20% Similarity=0.063 Sum_probs=54.0
Q ss_pred CCCCCCEEECCCCC-Cccc-CCccCCCCCCCcEEeCCCC-cCCCCCC----cCCCCCCCCCEEEcccCc-CCCCCccccc
Q 039642 104 SFPHLGYLDLRINQ-FFGI-IPPQIGNLSMLKFLGLSFN-QFSGSIP----PEIGYLTHLKLLSFSKNQ-LSGFIPHEIG 175 (353)
Q Consensus 104 ~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~----~~l~~l~~L~~L~L~~n~-~~~~~~~~l~ 175 (353)
.++.|+.+.+.++. +... .......+++|+.|+++++ ......+ .....+++|+.++++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35666666666653 2211 2233445667777777652 1111111 122345666677776665 3322222222
Q ss_pred -CCCCCCEEEcccCc-CCccCC-ccCCCCCCccEEEcccCcc
Q 039642 176 -RLSSLNGLNLYSNF-LKGSIP-PSLGNLTSLIYIDIGNNLL 214 (353)
Q Consensus 176 -~l~~L~~L~l~~n~-~~~~~~-~~l~~l~~L~~L~l~~n~l 214 (353)
.+++|+.|.+.++. +++..- .....++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25667777655554 332211 1223456667777766543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.33 E-value=0.0015 Score=32.91 Aligned_cols=19 Identities=47% Similarity=0.581 Sum_probs=9.4
Q ss_pred CCEEeCcCCcCccccCcccc
Q 039642 324 LLDLRLDNNTLSGSIPLSLG 343 (353)
Q Consensus 324 L~~L~l~~n~l~~~~p~~~~ 343 (353)
|+.|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.25 E-value=0.00024 Score=67.40 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=7.9
Q ss_pred cCCCCCCeeeccCCc
Q 039642 295 GNLTNLAILYIGINA 309 (353)
Q Consensus 295 ~~~~~L~~L~ls~n~ 309 (353)
..+++++.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 345555555555554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.00014 Score=61.55 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=42.4
Q ss_pred ccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCC-CcCCCCCCCCCEEEcccCcCCCCCccc-----cc
Q 039642 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSI-PPEIGYLTHLKLLSFSKNQLSGFIPHE-----IG 175 (353)
Q Consensus 102 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~-----l~ 175 (353)
...|+.|+.|.|+-|+|+..-| +..|++|++|+|..|.|.... -..+.++|+|+.|-|..|.-.+.-+.. +.
T Consensus 37 c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 4456666666666666653322 455666666666666655211 012345666666666666544433322 23
Q ss_pred CCCCCCEEE
Q 039642 176 RLSSLNGLN 184 (353)
Q Consensus 176 ~l~~L~~L~ 184 (353)
-+|+|++|+
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 455555554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.93 E-value=0.0037 Score=31.42 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=11.6
Q ss_pred CCCeeeccCCcccccCCccCc
Q 039642 299 NLAILYIGINALSGSIPNEIG 319 (353)
Q Consensus 299 ~L~~L~ls~n~~~~~~~~~~~ 319 (353)
+|++|++++|+++ .+|..++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666666 5555444
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.66 E-value=2.6e-05 Score=73.00 Aligned_cols=87 Identities=26% Similarity=0.264 Sum_probs=41.7
Q ss_pred CCCCCEEEcccCcCcCCcc----hhccCCCC-CCEEeccCCcCcccC----CccccCC-CCCCeeeccCCcccccC----
Q 039642 249 LTKLGTLYLHTNALFGSIP----YEIGNLKS-LSDLQLSYNTLNGSI----PFSLGNL-TNLAILYIGINALSGSI---- 314 (353)
Q Consensus 249 l~~L~~L~L~~n~l~~~~~----~~l~~~~~-L~~L~l~~n~l~~~~----~~~l~~~-~~L~~L~ls~n~~~~~~---- 314 (353)
..++++|++.+|.++.... ..+...++ +..|++++|.+.+.. ...+..+ +.++.++++.|.++..-
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4455566666555542211 12223333 445666666554321 1122233 45566666666665422
Q ss_pred CccCcCCCCCCEEeCcCCcCc
Q 039642 315 PNEIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 315 ~~~~~~~~~L~~L~l~~n~l~ 335 (353)
.+.+..++.++.+.+++|++.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 223344556666666666555
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.44 E-value=0.025 Score=26.32 Aligned_cols=13 Identities=46% Similarity=0.611 Sum_probs=5.1
Q ss_pred CCCEEeCcCCcCc
Q 039642 323 SLLDLRLDNNTLS 335 (353)
Q Consensus 323 ~L~~L~l~~n~l~ 335 (353)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.01 E-value=0.00019 Score=67.25 Aligned_cols=181 Identities=23% Similarity=0.239 Sum_probs=88.6
Q ss_pred EEEEEeCCCCcceecC---cccccCCCCCCEEECCCCCCccc----CCccCCCC-CCCcEEeCCCCcCCCC----CCcCC
Q 039642 83 VNSINLTSAGLKGTLH---DFSFSSFPHLGYLDLRINQFFGI----IPPQIGNL-SMLKFLGLSFNQFSGS----IPPEI 150 (353)
Q Consensus 83 v~~l~l~~~~l~~~~~---~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l 150 (353)
...+.|.+|.+..... ...+...+.|+.|++++|.+.+. +...+... +.+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4556666666543211 11455666777777777776643 11222222 4566666666665532 23334
Q ss_pred CCCCCCCEEEcccCcCCC----CCccccc----CCCCCCEEEcccCcCCccC----CccCCCCCC-ccEEEcccCccccc
Q 039642 151 GYLTHLKLLSFSKNQLSG----FIPHEIG----RLSSLNGLNLYSNFLKGSI----PPSLGNLTS-LIYIDIGNNLLSGS 217 (353)
Q Consensus 151 ~~l~~L~~L~L~~n~~~~----~~~~~l~----~l~~L~~L~l~~n~~~~~~----~~~l~~l~~-L~~L~l~~n~l~~~ 217 (353)
.....++.++++.|.+.. .++..+. ...++++|.+.+|.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456667777777776531 1122222 2455666666666554211 111222333 44466666555432
Q ss_pred ----CCccCCCC-CCCCEEEcccCCCccc----cCccccCCCCCCEEEcccCcCc
Q 039642 218 ----IPNEVGNL-KSLSDLRLDNNTLSGS----IPLSLGNLTKLGTLYLHTNALF 263 (353)
Q Consensus 218 ----~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~ 263 (353)
..+.+... ..+++++++.|.++.. +...+..+++++++.++.|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 11222233 4555666666665532 2223334455666666666553
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=0.0056 Score=49.61 Aligned_cols=82 Identities=21% Similarity=0.134 Sum_probs=40.4
Q ss_pred CCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCC-cchhcc-CCCCCCEEeccCC-cCcccCCccccCCCCCCee
Q 039642 227 SLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGS-IPYEIG-NLKSLSDLQLSYN-TLNGSIPFSLGNLTNLAIL 303 (353)
Q Consensus 227 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~-~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L 303 (353)
.++.++.+++.+....-+.+..++.++.|.+.+|.-.+. --+.++ -.++|+.|++++| +|++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 345566666665544444555556666666655542111 111111 2255666666654 3444433445555566655
Q ss_pred eccCC
Q 039642 304 YIGIN 308 (353)
Q Consensus 304 ~ls~n 308 (353)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 55443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=0.0064 Score=49.28 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=62.8
Q ss_pred CCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccC-Cccc-cCCCCCCeeeccCC-cccccCCccCcCCCCCCEE
Q 039642 251 KLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSI-PFSL-GNLTNLAILYIGIN-ALSGSIPNEIGNLKSLLDL 327 (353)
Q Consensus 251 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~l-~~~~~L~~L~ls~n-~~~~~~~~~~~~~~~L~~L 327 (353)
.++.+|-+++.+..+..+.+..+++++.|.+.+|.--+.. -+.+ +-.++|+.|++++| +||..-..++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4677888988888888888888999999999998644321 1112 23589999999988 5777666778888999999
Q ss_pred eCcCCc
Q 039642 328 RLDNNT 333 (353)
Q Consensus 328 ~l~~n~ 333 (353)
.|.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 888654
No 78
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.58 E-value=0.066 Score=48.36 Aligned_cols=247 Identities=15% Similarity=0.027 Sum_probs=133.8
Q ss_pred CCEEEEEeCCCCc-ceecCcccccCCCCCCEEECCCC-CCcccCCc-cCCCCCCCcEEeCCCCc-CCC------------
Q 039642 81 GRVNSINLTSAGL-KGTLHDFSFSSFPHLGYLDLRIN-QFFGIIPP-QIGNLSMLKFLGLSFNQ-FSG------------ 144 (353)
Q Consensus 81 ~~v~~l~l~~~~l-~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L~~L~l~~n~-l~~------------ 144 (353)
++++++++.++.. ++..-...-..+++++++++..| .++...-+ -...+++|++|+++.+. +++
T Consensus 164 pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~ 243 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE 243 (483)
T ss_pred CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh
Confidence 3666676666642 22111101235677777777774 34433222 22356777777776542 111
Q ss_pred --CC--------C-cCC----CCCCCCCEEEcccCcCC-CCC-cccccCCCCCCEEEcccCcCCc-cCCcc-CCCCCCcc
Q 039642 145 --SI--------P-PEI----GYLTHLKLLSFSKNQLS-GFI-PHEIGRLSSLNGLNLYSNFLKG-SIPPS-LGNLTSLI 205 (353)
Q Consensus 145 --~~--------~-~~l----~~l~~L~~L~L~~n~~~-~~~-~~~l~~l~~L~~L~l~~n~~~~-~~~~~-l~~l~~L~ 205 (353)
.. + ..+ ..+..+..+++..|... ... ...-..+..|+.+..+++...+ ..... -.+.++|+
T Consensus 244 l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~ 323 (483)
T KOG4341|consen 244 LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ 323 (483)
T ss_pred hhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE
Confidence 00 0 001 23455667776666432 111 1112346788888887765421 11112 24678899
Q ss_pred EEEcccCc-ccccCCccC-CCCCCCCEEEcccCCCcc--ccCccccCCCCCCEEEcccCcC-cCCc----chhccCCCCC
Q 039642 206 YIDIGNNL-LSGSIPNEV-GNLKSLSDLRLDNNTLSG--SIPLSLGNLTKLGTLYLHTNAL-FGSI----PYEIGNLKSL 276 (353)
Q Consensus 206 ~L~l~~n~-l~~~~~~~~-~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l-~~~~----~~~l~~~~~L 276 (353)
.+.++.++ +++.-...+ .+++.|+.+++.++.... .+...=.+++.|+.+.++.+.. +... ...-..+..+
T Consensus 324 ~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 324 VLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred EEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 99998886 332211222 467788888888876542 2222234578889998887764 2221 1112345678
Q ss_pred CEEeccCCcCc-ccCCccccCCCCCCeeeccCCccc-cc-CCccCcCCCCCCEE
Q 039642 277 SDLQLSYNTLN-GSIPFSLGNLTNLAILYIGINALS-GS-IPNEIGNLKSLLDL 327 (353)
Q Consensus 277 ~~L~l~~n~l~-~~~~~~l~~~~~L~~L~ls~n~~~-~~-~~~~~~~~~~L~~L 327 (353)
+.+.++++... +.....+..+++|+.+++-.++-. .. +...-.++|+++..
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 88889888654 333446677888888888777432 11 21222455665544
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.53 E-value=0.052 Score=27.73 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=6.9
Q ss_pred CCCCEEeCcCCcCccc
Q 039642 322 KSLLDLRLDNNTLSGS 337 (353)
Q Consensus 322 ~~L~~L~l~~n~l~~~ 337 (353)
++|+.|+|++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555555433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.49 E-value=0.011 Score=49.03 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=69.8
Q ss_pred cccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCC
Q 039642 245 SLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSL 324 (353)
Q Consensus 245 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L 324 (353)
.+......+.||++.|++... -..++.+..+..|+++.|++. ..|....+...+..+++.+|..+ ..|.++...+.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 455567788899988876322 223445567888999999887 67788888888888888888887 788888999999
Q ss_pred CEEeCcCCcCcccc
Q 039642 325 LDLRLDNNTLSGSI 338 (353)
Q Consensus 325 ~~L~l~~n~l~~~~ 338 (353)
+.+++-.|.+...+
T Consensus 114 k~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 114 KKNEQKKTEFFRKL 127 (326)
T ss_pred chhhhccCcchHHH
Confidence 99999998876433
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.72 E-value=0.0058 Score=50.66 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=48.3
Q ss_pred cCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccC
Q 039642 97 LHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGR 176 (353)
Q Consensus 97 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~ 176 (353)
+|...+..+...+.||++.|.+.. ....|.-+..|..|+++.|.+. ..|.++.....++.+++..|..+ ..|.++..
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred cchhhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence 333355556666666666665432 1222333445555566655555 45555555555555555555554 45555555
Q ss_pred CCCCCEEEcccCcC
Q 039642 177 LSSLNGLNLYSNFL 190 (353)
Q Consensus 177 l~~L~~L~l~~n~~ 190 (353)
.+.++++++-++.+
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 55555555555544
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.05 E-value=0.68 Score=23.95 Aligned_cols=14 Identities=50% Similarity=0.638 Sum_probs=7.8
Q ss_pred CCCCEEeCcCCcCc
Q 039642 322 KSLLDLRLDNNTLS 335 (353)
Q Consensus 322 ~~L~~L~l~~n~l~ 335 (353)
++|+.|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.05 E-value=0.68 Score=23.95 Aligned_cols=14 Identities=50% Similarity=0.638 Sum_probs=7.8
Q ss_pred CCCCEEeCcCCcCc
Q 039642 322 KSLLDLRLDNNTLS 335 (353)
Q Consensus 322 ~~L~~L~l~~n~l~ 335 (353)
++|+.|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.66 E-value=1.6 Score=22.74 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=11.8
Q ss_pred CCCCEEeCcCCcCccccCc
Q 039642 322 KSLLDLRLDNNTLSGSIPL 340 (353)
Q Consensus 322 ~~L~~L~l~~n~l~~~~p~ 340 (353)
++|+.|++++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777776 5554
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.12 E-value=2.7 Score=21.92 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=12.1
Q ss_pred CCCCCEEeCcCCcCc
Q 039642 321 LKSLLDLRLDNNTLS 335 (353)
Q Consensus 321 ~~~L~~L~l~~n~l~ 335 (353)
+++|+.|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357888899988886
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.91 E-value=12 Score=35.05 Aligned_cols=108 Identities=18% Similarity=0.048 Sum_probs=51.9
Q ss_pred CCCEEEcccCCCccccCcc--ccCCCCCCEEEcccCcCcCC-cchhc--------cCCCCCCEEeccCCcCcccCC---c
Q 039642 227 SLSDLRLDNNTLSGSIPLS--LGNLTKLGTLYLHTNALFGS-IPYEI--------GNLKSLSDLQLSYNTLNGSIP---F 292 (353)
Q Consensus 227 ~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~-~~~~l--------~~~~~L~~L~l~~n~l~~~~~---~ 292 (353)
.++++...+|...+..... +...+..+.+++.+..-..+ .+... ....-+..+.++.|.+....- .
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 3666677776665543322 22234555555543221000 00000 111235666666666543221 1
Q ss_pred cccCCCCCCeeeccCCcccc----cCCccCcCCCCCCEEeCcCCcC
Q 039642 293 SLGNLTNLAILYIGINALSG----SIPNEIGNLKSLLDLRLDNNTL 334 (353)
Q Consensus 293 ~l~~~~~L~~L~ls~n~~~~----~~~~~~~~~~~L~~L~l~~n~l 334 (353)
.+..-+.+.+|++++|.... .+|.......+++.+..+.|..
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 23445677888888776543 2344444445566665555543
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.76 E-value=3.4 Score=21.86 Aligned_cols=15 Identities=47% Similarity=0.589 Sum_probs=11.7
Q ss_pred CCCCEEeCcCCcCcc
Q 039642 322 KSLLDLRLDNNTLSG 336 (353)
Q Consensus 322 ~~L~~L~l~~n~l~~ 336 (353)
++|+.|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 568888888888863
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.15 E-value=23 Score=33.16 Aligned_cols=85 Identities=18% Similarity=0.071 Sum_probs=44.6
Q ss_pred CCCEEEcccCcCcCCcchhc--cCCCCCCEEeccCCcCccc-CCccc--------cCCCCCCeeeccCCcccccCC---c
Q 039642 251 KLGTLYLHTNALFGSIPYEI--GNLKSLSDLQLSYNTLNGS-IPFSL--------GNLTNLAILYIGINALSGSIP---N 316 (353)
Q Consensus 251 ~L~~L~L~~n~l~~~~~~~l--~~~~~L~~L~l~~n~l~~~-~~~~l--------~~~~~L~~L~ls~n~~~~~~~---~ 316 (353)
.++++++..|...++.-... ..-++.+.+++..-.-... .+... ...--+..+.++.|......- .
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 46677777776655443322 2234556665554332100 00000 112246777777776653221 2
Q ss_pred cCcCCCCCCEEeCcCCcCc
Q 039642 317 EIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 317 ~~~~~~~L~~L~l~~n~l~ 335 (353)
....-+.+.+|++++|...
T Consensus 435 ~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred hhccCcccccccccCCCcc
Confidence 2345578999999999765
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.87 E-value=5.1 Score=37.99 Aligned_cols=65 Identities=22% Similarity=0.162 Sum_probs=38.2
Q ss_pred CCCCCCEEEcccCcCcCC--cchhccCCCCCCEEeccCC--cCcccCCccccCCCCCCeeeccCCcccc
Q 039642 248 NLTKLGTLYLHTNALFGS--IPYEIGNLKSLSDLQLSYN--TLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 248 ~l~~L~~L~L~~n~l~~~--~~~~l~~~~~L~~L~l~~n--~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
+.+.+..+.|++|++... +...-...|+|+.|+|++| .+.....-.--+...|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456677788888876322 1222234578888888888 3332111111123467888888887765
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=55.23 E-value=8.9 Score=19.68 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=11.8
Q ss_pred CCCCCEEeCcCCc-Cc
Q 039642 321 LKSLLDLRLDNNT-LS 335 (353)
Q Consensus 321 ~~~L~~L~l~~n~-l~ 335 (353)
+++|+.|+|++|. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 5788999999885 55
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.30 E-value=15 Score=35.02 Aligned_cols=67 Identities=28% Similarity=0.186 Sum_probs=39.8
Q ss_pred CCCCCCCEEEcccCCCcc--ccCccccCCCCCCEEEcccCcCcCCcchhccC--CCCCCEEeccCCcCccc
Q 039642 223 GNLKSLSDLRLDNNTLSG--SIPLSLGNLTKLGTLYLHTNALFGSIPYEIGN--LKSLSDLQLSYNTLNGS 289 (353)
Q Consensus 223 ~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--~~~L~~L~l~~n~l~~~ 289 (353)
.+.+.+..+.+++|++.. .+...-...|+|+.|+|++|...-.....+.+ ...|++|-+.+|.+...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 355677788888888752 12222234578888888888211111112222 24578888888888653
No 92
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=27.77 E-value=17 Score=24.39 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHH
Q 039642 8 NNLVIFSLVFLILFP 22 (353)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (353)
||+-.|+++++++++
T Consensus 1 mKLt~vliVavLllt 15 (75)
T PF02950_consen 1 MKLTCVLIVAVLLLT 15 (75)
T ss_dssp ---------------
T ss_pred CCcchHHHHHHHHHH
Confidence 455566777776666
Done!