Query 039642
Match_columns 353
No_of_seqs 373 out of 4507
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 20:16:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 6.5E-45 2.2E-49 324.1 20.0 295 31-336 2-306 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-43 4.3E-48 352.0 23.2 307 35-353 11-350 (768)
3 4eco_A Uncharacterized protein 100.0 1.3E-42 4.5E-47 337.5 18.2 308 35-353 29-464 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 9.3E-40 3.2E-44 323.8 19.7 306 35-353 268-704 (876)
5 3rgz_A Protein brassinosteroid 100.0 3.3E-38 1.1E-42 313.1 22.7 270 83-353 370-711 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 4E-36 1.4E-40 281.2 26.6 272 81-353 30-402 (455)
7 4fcg_A Uncharacterized protein 100.0 1.2E-36 4.2E-41 272.3 13.5 271 35-335 26-314 (328)
8 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-36 5.2E-41 270.1 13.5 245 106-353 50-298 (313)
9 2id5_A Lingo-1, leucine rich r 100.0 1.1E-34 3.8E-39 273.1 26.2 272 81-353 32-327 (477)
10 2id5_A Lingo-1, leucine rich r 100.0 5.4E-34 1.8E-38 268.4 26.3 257 80-337 55-335 (477)
11 3v47_A TOLL-like receptor 5B a 100.0 2.4E-33 8.1E-38 262.4 25.3 260 80-339 53-412 (455)
12 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-32 4.1E-37 266.7 29.2 108 246-353 420-528 (606)
13 3t6q_A CD180 antigen; protein- 100.0 1.3E-32 4.4E-37 266.4 28.7 269 82-353 255-530 (606)
14 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-32 3.9E-37 247.3 25.6 276 69-353 32-327 (332)
15 1xku_A Decorin; proteoglycan, 100.0 3.9E-32 1.3E-36 243.6 28.5 278 68-353 29-326 (330)
16 3t6q_A CD180 antigen; protein- 100.0 4.3E-33 1.5E-37 269.8 23.5 270 81-353 278-554 (606)
17 3o6n_A APL1; leucine-rich repe 100.0 1.4E-32 4.6E-37 252.2 23.1 262 81-353 45-346 (390)
18 3oja_B Anopheles plasmodium-re 100.0 1.3E-32 4.3E-37 265.8 23.5 261 82-353 52-352 (597)
19 3j0a_A TOLL-like receptor 5; m 100.0 2E-32 7E-37 274.2 24.2 282 70-353 14-369 (844)
20 2z7x_B TOLL-like receptor 1, v 100.0 5.9E-32 2E-36 257.1 24.5 129 223-353 321-475 (520)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-32 4.2E-37 263.5 17.9 270 81-353 26-417 (549)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-31 7.2E-36 255.6 26.2 107 81-191 52-159 (562)
23 4eco_A Uncharacterized protein 100.0 4.7E-33 1.6E-37 270.4 14.8 267 80-353 205-543 (636)
24 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-31 1.4E-35 255.8 27.3 133 220-353 418-552 (606)
25 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-31 3.7E-36 263.4 23.2 272 81-353 25-360 (680)
26 1xku_A Decorin; proteoglycan, 100.0 7.3E-31 2.5E-35 235.3 26.0 261 82-353 32-300 (330)
27 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-31 6.2E-36 267.3 24.1 268 80-352 47-387 (844)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-31 4.3E-36 257.2 20.4 263 80-353 75-504 (562)
29 2z66_A Variable lymphocyte rec 100.0 2.2E-31 7.6E-36 236.1 20.5 253 69-337 6-263 (306)
30 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-30 5.9E-35 252.5 28.1 134 81-215 52-186 (635)
31 2z7x_B TOLL-like receptor 1, v 100.0 6.7E-31 2.3E-35 249.9 24.3 137 199-339 321-485 (520)
32 4fcg_A Uncharacterized protein 100.0 2.1E-31 7.2E-36 238.3 19.4 220 129-353 80-308 (328)
33 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-30 3.9E-35 234.2 22.7 260 82-353 34-301 (332)
34 4ecn_A Leucine-rich repeat pro 100.0 1.7E-31 5.8E-36 264.8 18.6 263 80-352 447-782 (876)
35 1ziw_A TOLL-like receptor 3; i 100.0 5.4E-30 1.9E-34 251.3 29.2 270 83-353 250-591 (680)
36 3zyj_A Leucine-rich repeat-con 100.0 3.7E-30 1.2E-34 239.7 25.7 228 106-335 64-292 (440)
37 2z63_A TOLL-like receptor 4, v 100.0 1.5E-30 5.1E-35 250.1 23.8 108 246-353 417-525 (570)
38 2z63_A TOLL-like receptor 4, v 100.0 1.7E-30 5.7E-35 249.8 24.1 111 81-192 52-163 (570)
39 2z80_A TOLL-like receptor 2, v 100.0 4.9E-31 1.7E-35 238.7 19.2 256 82-339 53-318 (353)
40 3zyi_A Leucine-rich repeat-con 100.0 4.9E-30 1.7E-34 239.7 25.1 228 106-335 75-303 (452)
41 3o6n_A APL1; leucine-rich repe 100.0 8E-30 2.7E-34 233.8 21.8 246 104-353 43-325 (390)
42 2z66_A Variable lymphocyte rec 100.0 9.9E-30 3.4E-34 225.5 21.4 241 109-353 10-255 (306)
43 4fmz_A Internalin; leucine ric 100.0 4.1E-29 1.4E-33 225.4 23.6 255 81-353 66-340 (347)
44 1ozn_A Reticulon 4 receptor; N 100.0 6.7E-30 2.3E-34 224.3 17.8 256 84-344 14-270 (285)
45 2z80_A TOLL-like receptor 2, v 100.0 3.3E-30 1.1E-34 233.2 16.1 272 67-353 27-308 (353)
46 3zyi_A Leucine-rich repeat-con 100.0 9.1E-29 3.1E-33 231.1 26.4 222 130-353 75-297 (452)
47 4fmz_A Internalin; leucine ric 100.0 7.5E-29 2.6E-33 223.7 24.7 255 81-353 44-318 (347)
48 3zyj_A Leucine-rich repeat-con 100.0 1.4E-28 4.7E-33 229.1 26.7 222 130-353 64-286 (440)
49 3oja_B Anopheles plasmodium-re 100.0 1.6E-29 5.5E-34 244.1 20.7 246 104-353 49-331 (597)
50 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-28 3.9E-33 216.5 22.3 228 109-339 14-242 (285)
51 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-29 1.1E-33 239.9 19.3 180 69-262 3-184 (549)
52 3o53_A Protein LRIM1, AGAP0063 100.0 8.4E-31 2.9E-35 233.5 6.8 256 82-352 11-268 (317)
53 1wwl_A Monocyte differentiatio 100.0 1.6E-31 5.5E-36 237.6 1.6 244 82-336 44-310 (312)
54 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-27 6E-32 222.1 26.5 205 82-312 43-247 (457)
55 1o6v_A Internalin A; bacterial 100.0 6.7E-28 2.3E-32 226.1 23.2 254 81-353 68-360 (466)
56 2o6q_A Variable lymphocyte rec 100.0 1.1E-27 3.9E-32 208.4 22.5 218 67-288 2-219 (270)
57 1o6v_A Internalin A; bacterial 100.0 1.2E-27 4.1E-32 224.4 22.9 251 81-353 90-382 (466)
58 3bz5_A Internalin-J, INLJ; leu 100.0 4.9E-27 1.7E-31 219.1 26.2 246 81-353 64-346 (457)
59 1wwl_A Monocyte differentiatio 100.0 2.1E-30 7.1E-35 230.5 2.9 242 102-353 39-303 (312)
60 4g8a_A TOLL-like receptor 4; l 100.0 5.8E-27 2E-31 227.6 27.3 133 107-239 53-186 (635)
61 3oja_A Leucine-rich immune mol 100.0 1.5E-29 5.2E-34 238.0 8.7 235 103-351 31-267 (487)
62 2z62_A TOLL-like receptor 4, v 100.0 1.2E-26 4E-31 202.6 21.0 206 106-312 28-238 (276)
63 3o53_A Protein LRIM1, AGAP0063 99.9 6.1E-28 2.1E-32 215.0 9.9 233 107-353 11-244 (317)
64 2o6q_A Variable lymphocyte rec 99.9 1.9E-25 6.5E-30 194.3 23.9 204 107-313 17-220 (270)
65 3rfs_A Internalin B, repeat mo 99.9 2.9E-26 1E-30 199.6 18.0 211 101-322 36-246 (272)
66 3oja_A Leucine-rich immune mol 99.9 1E-27 3.5E-32 225.5 9.2 235 81-330 34-270 (487)
67 2z62_A TOLL-like receptor 4, v 99.9 1E-25 3.4E-30 196.7 20.5 226 110-339 11-241 (276)
68 3rfs_A Internalin B, repeat mo 99.9 5.7E-26 2E-30 197.8 18.4 226 108-346 21-246 (272)
69 1jl5_A Outer protein YOPM; leu 99.9 5.6E-25 1.9E-29 205.0 25.2 214 106-345 131-382 (454)
70 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-25 3.9E-30 216.2 20.6 250 66-353 18-291 (622)
71 1p9a_G Platelet glycoprotein I 99.9 4.5E-25 1.5E-29 193.8 21.8 205 101-312 5-209 (290)
72 1jl5_A Outer protein YOPM; leu 99.9 9.8E-26 3.4E-30 210.1 16.8 243 81-352 11-283 (454)
73 2ast_B S-phase kinase-associat 99.9 3.5E-28 1.2E-32 218.3 -1.7 264 71-344 38-315 (336)
74 1z7x_W Ribonuclease inhibitor; 99.9 8.2E-29 2.8E-33 231.9 -6.3 271 82-353 86-405 (461)
75 1p9a_G Platelet glycoprotein I 99.9 2.6E-24 8.9E-29 188.9 21.7 202 79-288 8-209 (290)
76 4glp_A Monocyte differentiatio 99.9 2.3E-25 7.7E-30 197.8 14.5 225 106-336 64-308 (310)
77 2ca6_A RAN GTPase-activating p 99.9 2.8E-27 9.6E-32 216.5 -1.0 239 101-339 27-320 (386)
78 1z7x_W Ribonuclease inhibitor; 99.9 7.2E-28 2.5E-32 225.5 -5.5 273 81-353 56-377 (461)
79 3g06_A SSPH2 (leucine-rich rep 99.9 1.8E-23 6.2E-28 200.9 22.5 229 81-344 61-306 (622)
80 3goz_A Leucine-rich repeat-con 99.9 1.4E-26 4.7E-31 210.1 0.5 251 86-337 3-299 (362)
81 2xwt_C Thyrotropin receptor; s 99.9 8E-24 2.7E-28 180.7 16.3 196 131-332 32-236 (239)
82 3m19_A Variable lymphocyte rec 99.9 3.2E-23 1.1E-27 178.2 20.0 181 130-313 14-194 (251)
83 2xwt_C Thyrotropin receptor; s 99.9 8.8E-24 3E-28 180.4 16.1 196 107-308 32-236 (239)
84 3m19_A Variable lymphocyte rec 99.9 7E-23 2.4E-27 176.1 20.2 180 107-289 15-194 (251)
85 1h6u_A Internalin H; cell adhe 99.9 2.7E-23 9.3E-28 184.1 17.6 196 101-312 36-231 (308)
86 4glp_A Monocyte differentiatio 99.9 5.2E-24 1.8E-28 189.0 12.6 226 81-312 64-308 (310)
87 2ca6_A RAN GTPase-activating p 99.9 6E-26 2E-30 207.7 0.1 232 122-353 24-310 (386)
88 2ast_B S-phase kinase-associat 99.9 2.6E-25 9E-30 199.5 3.5 238 107-349 48-299 (336)
89 3goz_A Leucine-rich repeat-con 99.9 1E-25 3.4E-30 204.4 0.0 244 110-353 2-291 (362)
90 1h6u_A Internalin H; cell adhe 99.9 6.1E-23 2.1E-27 181.8 17.2 191 81-288 41-231 (308)
91 2o6s_A Variable lymphocyte rec 99.9 4.1E-22 1.4E-26 166.3 17.7 194 134-341 11-204 (208)
92 2o6s_A Variable lymphocyte rec 99.9 7.6E-22 2.6E-26 164.7 15.8 181 157-347 10-190 (208)
93 3cvr_A Invasion plasmid antige 99.9 8.2E-22 2.8E-26 187.3 17.3 187 107-321 60-253 (571)
94 4ay9_X Follicle-stimulating ho 99.9 3.4E-21 1.2E-25 173.7 19.3 234 90-332 18-256 (350)
95 4ay9_X Follicle-stimulating ho 99.9 3.7E-21 1.3E-25 173.5 18.5 234 70-310 9-258 (350)
96 3cvr_A Invasion plasmid antige 99.9 5.2E-21 1.8E-25 181.8 18.4 197 71-297 49-253 (571)
97 2v9t_B SLIT homolog 2 protein 99.8 1E-19 3.5E-24 153.0 16.8 153 157-312 14-166 (220)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-19 3.6E-24 152.9 16.8 153 157-312 14-167 (220)
99 1h6t_A Internalin B; cell adhe 99.8 2.1E-20 7.2E-25 164.1 13.0 186 111-312 29-214 (291)
100 3e6j_A Variable lymphocyte rec 99.8 2.1E-19 7E-24 152.2 18.0 159 65-239 14-172 (229)
101 1m9s_A Internalin B; cell inva 99.8 8.3E-20 2.8E-24 175.3 17.1 174 102-289 39-212 (605)
102 1h6t_A Internalin B; cell adhe 99.8 4.9E-20 1.7E-24 161.7 14.1 173 102-288 42-214 (291)
103 1m9s_A Internalin B; cell inva 99.8 2.5E-20 8.6E-25 178.9 12.8 191 107-313 22-212 (605)
104 3ogk_B Coronatine-insensitive 99.8 2.1E-22 7E-27 194.3 -2.1 56 81-138 192-251 (592)
105 3e6j_A Variable lymphocyte rec 99.8 3.1E-19 1.1E-23 151.1 17.5 154 156-313 21-174 (229)
106 4b8c_D Glucose-repressible alc 99.8 1.3E-21 4.5E-26 192.1 2.8 265 35-335 131-404 (727)
107 2xot_A Amphoterin-induced prot 99.8 5.7E-20 2E-24 166.4 13.3 178 132-312 20-203 (361)
108 3ogk_B Coronatine-insensitive 99.8 3.7E-22 1.3E-26 192.5 -1.3 270 81-353 164-520 (592)
109 2xot_A Amphoterin-induced prot 99.8 1.4E-19 4.8E-24 163.8 15.5 177 109-288 21-203 (361)
110 2v9t_B SLIT homolog 2 protein 99.8 3.7E-19 1.3E-23 149.6 16.9 153 133-288 14-166 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.8 3.7E-19 1.3E-23 149.6 15.8 155 132-289 13-168 (220)
112 4ezg_A Putative uncharacterize 99.8 2E-19 6.8E-24 148.6 13.3 151 178-336 44-195 (197)
113 4ezg_A Putative uncharacterize 99.8 2.9E-19 9.9E-24 147.7 13.4 155 151-312 41-195 (197)
114 1dce_A Protein (RAB geranylger 99.8 1.1E-22 3.8E-27 194.0 -11.9 190 152-353 347-567 (567)
115 1xeu_A Internalin C; cellular 99.8 5.7E-19 2E-23 152.6 9.5 171 128-313 17-187 (263)
116 1xeu_A Internalin C; cellular 99.8 2E-18 6.8E-23 149.2 10.7 171 104-289 17-187 (263)
117 1dce_A Protein (RAB geranylger 99.8 6.4E-22 2.2E-26 188.8 -13.9 196 127-329 346-567 (567)
118 3sb4_A Hypothetical leucine ri 99.7 2.8E-18 9.6E-23 153.3 10.1 240 105-353 48-328 (329)
119 2p1m_B Transport inhibitor res 99.7 1.4E-20 4.8E-25 181.5 -5.3 270 81-353 130-513 (594)
120 1w8a_A SLIT protein; signaling 99.7 2.5E-17 8.6E-22 135.3 14.2 130 181-313 11-141 (192)
121 2ell_A Acidic leucine-rich nuc 99.7 1.1E-17 3.6E-22 134.6 11.5 136 202-340 24-164 (168)
122 2p1m_B Transport inhibitor res 99.7 2.2E-20 7.4E-25 180.2 -5.3 271 80-353 104-488 (594)
123 2je0_A Acidic leucine-rich nuc 99.7 8.8E-18 3E-22 132.2 7.7 127 202-330 17-148 (149)
124 2ell_A Acidic leucine-rich nuc 99.7 4.4E-17 1.5E-21 130.9 11.9 136 178-316 24-164 (168)
125 2je0_A Acidic leucine-rich nuc 99.7 2E-17 6.9E-22 130.1 9.1 127 225-353 16-147 (149)
126 4b8c_D Glucose-repressible alc 99.7 1.6E-18 5.5E-23 170.2 3.0 161 161-332 208-369 (727)
127 1w8a_A SLIT protein; signaling 99.7 2.5E-16 8.4E-21 129.4 15.1 130 133-265 11-141 (192)
128 4fdw_A Leucine rich hypothetic 99.7 3.5E-15 1.2E-19 136.3 23.7 245 97-353 127-377 (401)
129 2o6r_A Variable lymphocyte rec 99.7 4.8E-16 1.6E-20 125.9 14.3 130 180-312 9-138 (177)
130 2wfh_A SLIT homolog 2 protein 99.7 5.5E-16 1.9E-20 127.3 13.9 128 181-312 13-140 (193)
131 3sb4_A Hypothetical leucine ri 99.7 1.7E-16 5.7E-21 141.7 9.3 239 81-329 49-328 (329)
132 2wfh_A SLIT homolog 2 protein 99.6 3.4E-15 1.2E-19 122.6 14.9 126 133-262 13-138 (193)
133 2o6r_A Variable lymphocyte rec 99.6 5.4E-15 1.8E-19 119.7 15.4 129 133-264 10-138 (177)
134 4fdw_A Leucine rich hypothetic 99.6 4.9E-14 1.7E-18 128.7 21.7 242 82-335 136-383 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.6 1.7E-15 5.8E-20 122.6 8.7 110 174-287 15-126 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.6 3E-15 1E-19 121.1 9.1 133 198-335 15-153 (176)
137 1ds9_A Outer arm dynein; leuci 99.6 6.3E-18 2.1E-22 139.7 -8.8 154 175-335 15-185 (198)
138 1ds9_A Outer arm dynein; leuci 99.6 8.6E-18 2.9E-22 138.9 -8.8 151 154-311 18-185 (198)
139 3g39_A Variable lymphocyte rec 99.5 6.8E-14 2.3E-18 112.4 12.3 106 204-312 11-116 (170)
140 2r9u_A Variable lymphocyte rec 99.5 1.8E-13 6.3E-18 110.2 12.2 105 205-312 15-119 (174)
141 3g39_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 108.1 12.0 108 179-289 10-117 (170)
142 2r9u_A Variable lymphocyte rec 99.4 8.4E-13 2.9E-17 106.3 12.1 106 180-288 14-119 (174)
143 4fs7_A Uncharacterized protein 99.4 2.4E-11 8.2E-16 111.0 21.8 259 82-351 72-393 (394)
144 3un9_A NLR family member X1; l 99.4 3.3E-15 1.1E-19 135.2 -5.9 183 153-335 71-283 (372)
145 3un9_A NLR family member X1; l 99.4 6.3E-15 2.2E-19 133.3 -5.6 160 130-289 72-254 (372)
146 4fs7_A Uncharacterized protein 99.3 1.2E-10 4.1E-15 106.3 19.0 216 101-327 157-393 (394)
147 4gt6_A Cell surface protein; l 99.3 4.4E-10 1.5E-14 102.6 22.4 101 83-187 66-169 (394)
148 2ifg_A High affinity nerve gro 99.3 1.1E-11 3.7E-16 111.2 10.8 104 206-312 12-117 (347)
149 2ifg_A High affinity nerve gro 99.2 3.8E-11 1.3E-15 107.7 10.8 105 181-288 11-117 (347)
150 4gt6_A Cell surface protein; l 99.2 2.1E-09 7.1E-14 98.1 20.4 259 82-352 88-384 (394)
151 2ra8_A Uncharacterized protein 99.1 1.5E-11 5.1E-16 110.4 3.5 155 174-333 168-341 (362)
152 4h09_A Hypothetical leucine ri 99.1 3.1E-08 1E-12 89.8 23.0 76 82-163 47-122 (379)
153 2ra8_A Uncharacterized protein 99.1 6.2E-11 2.1E-15 106.4 4.3 144 194-340 164-325 (362)
154 4h09_A Hypothetical leucine ri 98.9 3.7E-07 1.3E-11 82.6 23.4 253 81-346 69-356 (379)
155 1io0_A Tropomodulin; LRR prote 98.7 1.9E-09 6.6E-14 87.4 1.2 115 221-335 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 4.3E-09 1.5E-13 85.3 0.8 90 222-311 61-164 (185)
157 3rw6_A Nuclear RNA export fact 98.6 2.9E-09 9.8E-14 90.9 -0.8 65 273-339 169-237 (267)
158 3e4g_A ATP synthase subunit S, 98.5 5.2E-08 1.8E-12 77.3 2.2 83 251-333 62-150 (176)
159 3e4g_A ATP synthase subunit S, 98.4 1.4E-07 4.8E-12 74.8 3.1 83 227-309 62-150 (176)
160 3rw6_A Nuclear RNA export fact 98.4 3E-07 1E-11 78.4 5.1 78 249-328 169-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 2.2E-05 7.5E-10 63.4 2.4 112 223-334 38-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 2.2E-05 7.4E-10 63.4 2.3 110 244-353 35-164 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.0011 3.9E-08 49.7 6.3 57 253-311 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0043 1.5E-07 46.5 6.0 57 229-287 11-68 (130)
165 2lz0_A Uncharacterized protein 70.8 16 0.00053 25.3 6.6 39 124-163 14-52 (100)
166 2lz0_A Uncharacterized protein 60.4 17 0.00058 25.1 5.1 40 147-187 13-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.5e-45 Score=324.13 Aligned_cols=295 Identities=33% Similarity=0.553 Sum_probs=273.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCc--cceeeeCCC---CCEEEEEeCCCCcce--ecCccccc
Q 039642 31 SCDSTEEAHALLKWKTSLQNQNGSLLPSWTLNNPTKISPCT--WFGIHCNHA---GRVNSINLTSAGLKG--TLHDFSFS 103 (353)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~--~~~v~c~~~---~~v~~l~l~~~~l~~--~~~~~~l~ 103 (353)
.|. ++|++||++||+++.+ +. .+.+|. .+.+||. |.||.|+.. ++|+.++++++.+.+ .++. .+.
T Consensus 2 ~c~-~~~~~aL~~~k~~~~~-~~-~l~~W~----~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l~ 73 (313)
T 1ogq_A 2 LCN-PQDKQALLQIKKDLGN-PT-TLSSWL----PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLA 73 (313)
T ss_dssp CSC-HHHHHHHHHHHHHTTC-CG-GGTTCC----TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGG
T ss_pred CCC-HHHHHHHHHHHHhcCC-cc-cccCCC----CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hHh
Confidence 577 8899999999999965 43 678997 4568898 999999854 799999999999998 8888 999
Q ss_pred CCCCCCEEECCC-CCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCE
Q 039642 104 SFPHLGYLDLRI-NQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNG 182 (353)
Q Consensus 104 ~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 182 (353)
++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 999999999995 9999999999999999999999999999899999999999999999999999899999999999999
Q ss_pred EEcccCcCCccCCccCCCCC-CccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCc
Q 039642 183 LNLYSNFLKGSIPPSLGNLT-SLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNA 261 (353)
Q Consensus 183 L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 261 (353)
|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..+..+..+++|++|++++|.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 99999999999999999998 999999999999999999998887 9999999999998899999999999999999999
Q ss_pred CcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCc-Ccc
Q 039642 262 LFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNT-LSG 336 (353)
Q Consensus 262 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~ 336 (353)
+++..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 9877775 778899999999999999999999999999999999999999999986 889999999999998 444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-43 Score=351.98 Aligned_cols=307 Identities=31% Similarity=0.450 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccceeeeCCCCCEEEEEeCCCCccee---cCc------------
Q 039642 35 TEEAHALLKWKTSLQNQNGSLLPSWTLNNPTKISPCTWFGIHCNHAGRVNSINLTSAGLKGT---LHD------------ 99 (353)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~~~v~c~~~~~v~~l~l~~~~l~~~---~~~------------ 99 (353)
++|++||++||+++.+ +. .+++|. .+.+||.|.||.|+ .++|+.++++++++.|. +++
T Consensus 11 ~~~~~all~~k~~~~~-~~-~l~~W~----~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 11 YREIHQLISFKDVLPD-KN-LLPDWS----SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp HHHHHHHHHHHTTCSC-TT-SSTTCC----TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred HHHHHHHHHHHhhCCC-cc-cccCCC----CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 7899999999999984 55 789997 56789999999998 78999999999999886 443
Q ss_pred ----------ccccCCCCCCEEECCCCCCcccCCc--cCCCCCCCcEEeCCCCcCCCCCCcCC-CCCCCCCEEEcccCcC
Q 039642 100 ----------FSFSSFPHLGYLDLRINQFFGIIPP--QIGNLSMLKFLGLSFNQFSGSIPPEI-GYLTHLKLLSFSKNQL 166 (353)
Q Consensus 100 ----------~~l~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~~ 166 (353)
..+.++++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 1566677777777777777776666 67777777777777777766666554 5677777777777777
Q ss_pred CCCCccc---ccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccC
Q 039642 167 SGFIPHE---IGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIP 243 (353)
Q Consensus 167 ~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 243 (353)
.+..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 6655544 55666666666666666544332 5566666666666666655554 6666666666666666666666
Q ss_pred ccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCC-CCCCeeeccCCcccccCCccCcCCC
Q 039642 244 LSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNL-TNLAILYIGINALSGSIPNEIGNLK 322 (353)
Q Consensus 244 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~L~~L~ls~n~~~~~~~~~~~~~~ 322 (353)
..+..+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|++++.+|..++.++
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 66666666666666666665555443 45566666666666665555555443 6666666666666666666666666
Q ss_pred CCCEEeCcCCcCccccCcc-ccCCCCCCeeeC
Q 039642 323 SLLDLRLDNNTLSGSIPLS-LGNLTKLVTLYL 353 (353)
Q Consensus 323 ~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l 353 (353)
+|+.|++++|+++|.+|.. +..+++|++|++
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 6666666666666666644 566666666653
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-42 Score=337.50 Aligned_cols=308 Identities=21% Similarity=0.289 Sum_probs=266.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCC-------CCCCCCCCCCCCCcc---ceeeeCCCCCEEEEEeCCCCcceecCcccccC
Q 039642 35 TEEAHALLKWKTSLQNQNGSLLP-------SWTLNNPTKISPCTW---FGIHCNHAGRVNSINLTSAGLKGTLHDFSFSS 104 (353)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~-------~W~~~~~~~~~~c~~---~~v~c~~~~~v~~l~l~~~~l~~~~~~~~l~~ 104 (353)
..|+.||.+++.++.++.|.... +|+ .+.++|.| .||.|+..++|++++|+++++.|.+|+ .+++
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~----~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l~~ 103 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWN----FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQ 103 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCC----CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GGGG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC----CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-HHhc
Confidence 57899999999999876665433 787 56789999 999999889999999999999999998 9999
Q ss_pred CCCCCEEECCCCCC------------------------------------------------------------------
Q 039642 105 FPHLGYLDLRINQF------------------------------------------------------------------ 118 (353)
Q Consensus 105 l~~L~~L~l~~n~l------------------------------------------------------------------ 118 (353)
+++|++|++++|.+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999998843
Q ss_pred ------------cccCCccCCCCCCCcEEeCCCCcCCCC-----------------CCcCCC--CCCCCCEEEcccCcCC
Q 039642 119 ------------FGIIPPQIGNLSMLKFLGLSFNQFSGS-----------------IPPEIG--YLTHLKLLSFSKNQLS 167 (353)
Q Consensus 119 ------------~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~~~ 167 (353)
++ +|..++++++|++|++++|.+++. +|..+. ++++|++|++++|.+.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 34 677889999999999999999975 899998 9999999999999999
Q ss_pred CCCcccccCCCCCCEEEcccCc-CCc-cCCccCCCC------CCccEEEcccCcccccCCc--cCCCCCCCCEEEcccCC
Q 039642 168 GFIPHEIGRLSSLNGLNLYSNF-LKG-SIPPSLGNL------TSLIYIDIGNNLLSGSIPN--EVGNLKSLSDLRLDNNT 237 (353)
Q Consensus 168 ~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~n~ 237 (353)
+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++|.
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence 9999999999999999999998 888 788877765 89999999999999 7888 89999999999999999
Q ss_pred CccccCccccCCCCCCEEEcccCcCcCCcchhccCCCC-CCEEeccCCcCcccCCccccCCC--CCCeeeccCCcccccC
Q 039642 238 LSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKS-LSDLQLSYNTLNGSIPFSLGNLT--NLAILYIGINALSGSI 314 (353)
Q Consensus 238 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~ls~n~~~~~~ 314 (353)
++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+++.+
T Consensus 342 l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 342 LEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp CEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred Cccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence 998888 8888889999999999886 77777888888 999999999888 6777666544 7888888888888888
Q ss_pred CccCc-------CCCCCCEEeCcCCcCccccCc-cccCCCCCCeeeC
Q 039642 315 PNEIG-------NLKSLLDLRLDNNTLSGSIPL-SLGNLTKLVTLYL 353 (353)
Q Consensus 315 ~~~~~-------~~~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l 353 (353)
|..+. .+++|+.|++++|+++ .+|. .+..+++|++|++
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINL 464 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEEC
T ss_pred hhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEEC
Confidence 87777 6778888888888888 4444 3456778887765
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.3e-40 Score=323.79 Aligned_cols=306 Identities=19% Similarity=0.266 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCC-CCCCCC--Ccc------------ceeeeCCCCCEEEEEeCCCCcceecCc
Q 039642 35 TEEAHALLKWKTSLQNQNGSLLPSWTLNN-PTKISP--CTW------------FGIHCNHAGRVNSINLTSAGLKGTLHD 99 (353)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~W~~~~-~~~~~~--c~~------------~~v~c~~~~~v~~l~l~~~~l~~~~~~ 99 (353)
.+|+.||++||+++.++ +|+... ..+.++ |.| .||.|+..++|+.|+|+++++.|.+|+
T Consensus 268 ~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 268 IKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred hHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence 67999999999999752 676322 012344 999 999999889999999999999999998
Q ss_pred ccccCCCCCCEEEC-CCCCCccc---------------------------------------------------------
Q 039642 100 FSFSSFPHLGYLDL-RINQFFGI--------------------------------------------------------- 121 (353)
Q Consensus 100 ~~l~~l~~L~~L~l-~~n~l~~~--------------------------------------------------------- 121 (353)
.++++++|+.|++ ++|.+.|.
T Consensus 342 -~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 342 -AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp -GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred -HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 9999999999999 66654333
Q ss_pred -------------------CCccCCCCCCCcEEeCCCCcCCC-----------------CCCcCCC--CCCCCCEEEccc
Q 039642 122 -------------------IPPQIGNLSMLKFLGLSFNQFSG-----------------SIPPEIG--YLTHLKLLSFSK 163 (353)
Q Consensus 122 -------------------~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~ 163 (353)
+|..+.++++|++|++++|.+++ .+|..+. ++++|++|++++
T Consensus 421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 67788899999999999999997 3898888 999999999999
Q ss_pred CcCCCCCcccccCCCCCCEEEcccCc-CCc-cCCccCCC-------CCCccEEEcccCcccccCCc--cCCCCCCCCEEE
Q 039642 164 NQLSGFIPHEIGRLSSLNGLNLYSNF-LKG-SIPPSLGN-------LTSLIYIDIGNNLLSGSIPN--EVGNLKSLSDLR 232 (353)
Q Consensus 164 n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~-------l~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~ 232 (353)
|.+.+.+|..+.++++|+.|++++|. +++ .+|..+.. +++|++|++++|.++ .+|. .++++++|+.|+
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD 579 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE
Confidence 99999999999999999999999998 887 67765544 459999999999999 7888 899999999999
Q ss_pred cccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCC-CCEEeccCCcCcccCCccccCCCC--CCeeeccCCc
Q 039642 233 LDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKS-LSDLQLSYNTLNGSIPFSLGNLTN--LAILYIGINA 309 (353)
Q Consensus 233 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~--L~~L~ls~n~ 309 (353)
+++|.++ .+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+. |+.|++++|+
T Consensus 580 Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 580 CVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCc
Confidence 9999998 777 8889999999999999987 78888888888 999999999988 67776665543 8888888888
Q ss_pred ccccCCccC---c--CCCCCCEEeCcCCcCccccCccc-cCCCCCCeeeC
Q 039642 310 LSGSIPNEI---G--NLKSLLDLRLDNNTLSGSIPLSL-GNLTKLVTLYL 353 (353)
Q Consensus 310 ~~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l 353 (353)
+++.+|... . .+++|+.|++++|+++ .+|..+ ..+++|++|+|
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIIL 704 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEEC
T ss_pred CCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEEC
Confidence 776554321 1 2235666666666665 444333 35555555543
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-38 Score=313.15 Aligned_cols=270 Identities=41% Similarity=0.602 Sum_probs=161.1
Q ss_pred EEEEEeCCCCcceecCcccccC--CCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 83 VNSINLTSAGLKGTLHDFSFSS--FPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 83 v~~l~l~~~~l~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
++.+++++|.+.+.++. .+.. +++|++|++++|.+++.+|..+.++++|++|++++|.+++..|..+..+++|++|+
T Consensus 370 L~~L~Ls~N~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILP-NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp CSEEECCSSEEEEECCT-TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CcEEEccCCCcCCCcCh-hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 33444444444433333 2222 44555555555555555555555666666666666666555565566666666666
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcc
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG 240 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 240 (353)
+++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..++.+++|++|++++|.+++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 66666665566566666666666666666665566666666666666666666666666666666666666666666666
Q ss_pred ccCccccCCCCCCEEEcccCcCcCCcchhc--------------------------------------------------
Q 039642 241 SIPLSLGNLTKLGTLYLHTNALFGSIPYEI-------------------------------------------------- 270 (353)
Q Consensus 241 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-------------------------------------------------- 270 (353)
.+|..+..+++|++|++++|.+++.+|..+
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 666666666666666666665555444322
Q ss_pred --------------------cCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCc
Q 039642 271 --------------------GNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLD 330 (353)
Q Consensus 271 --------------------~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~ 330 (353)
..+++|+.|++++|++++.+|..++.+++|+.|++++|+++|.+|..++.+++|+.|||+
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 123456666666666666666666666666666666666666666666666666666666
Q ss_pred CCcCccccCccccCCCCCCeeeC
Q 039642 331 NNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 331 ~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
+|+++|.+|..+..+++|++|++
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEEC
T ss_pred CCcccCcCChHHhCCCCCCEEEC
Confidence 66666666666666666666654
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4e-36 Score=281.19 Aligned_cols=272 Identities=24% Similarity=0.259 Sum_probs=199.5
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccC-CccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGII-PPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLL 159 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 159 (353)
.+++.++++++.+.+..+. .+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 3677888888877765555 6777777777777777776443 4567777777777777777776666777777777777
Q ss_pred EcccCcCCCCCccc--ccCCCCCCEEEcccCcCCccCCcc-CCCCCCccEEEcccCcccccCCccCCCC-----------
Q 039642 160 SFSKNQLSGFIPHE--IGRLSSLNGLNLYSNFLKGSIPPS-LGNLTSLIYIDIGNNLLSGSIPNEVGNL----------- 225 (353)
Q Consensus 160 ~L~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~----------- 225 (353)
++++|.+.+..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..+..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 77777776544433 666777777777777776655554 5666777777777766655444332211
Q ss_pred --------------------------------------------------------------------------------
Q 039642 226 -------------------------------------------------------------------------------- 225 (353)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (353)
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence
Q ss_pred ------CCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCC
Q 039642 226 ------KSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTN 299 (353)
Q Consensus 226 ------~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 299 (353)
++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 35566666666666556677788888888888888887777778888888888888888888777777888888
Q ss_pred CCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 300 LAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 300 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence 899999888888877888888888999999998888766667788888888875
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.2e-36 Score=272.31 Aligned_cols=271 Identities=20% Similarity=0.266 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccceeeeCC---------CCCEEEEEeCCCCcceecCcccccCC
Q 039642 35 TEEAHALLKWKTSLQNQNGSLLPSWTLNNPTKISPCTWFGIHCNH---------AGRVNSINLTSAGLKGTLHDFSFSSF 105 (353)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~~~v~c~~---------~~~v~~l~l~~~~l~~~~~~~~l~~l 105 (353)
.+|+.+|++||.++..++..+...|........++|.|.|+.|.. .++|+.++++++.+. .+|.
T Consensus 26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~------ 98 (328)
T 4fcg_A 26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD------ 98 (328)
T ss_dssp CCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS------
T ss_pred chHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh------
Confidence 678999999999987667667778842223467889999999851 234555555555544 3333
Q ss_pred CCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEc
Q 039642 106 PHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNL 185 (353)
Q Consensus 106 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 185 (353)
.+.++++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 99 -------------------~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 99 -------------------QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp -------------------CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred -------------------hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 3444444555555544444 44444444555555555555544 44444555555555555
Q ss_pred ccCcCCccCCccCC---------CCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 039642 186 YSNFLKGSIPPSLG---------NLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLY 256 (353)
Q Consensus 186 ~~n~~~~~~~~~l~---------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 256 (353)
++|.+.+.+|..+. .+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 55444444444433 3777777777777777 667777777888888888887773 555677788888888
Q ss_pred cccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCc
Q 039642 257 LHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 257 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 335 (353)
+++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|+.+..+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888877777777778888888888888877777877888888888888888888888888888888888888776554
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-36 Score=270.09 Aligned_cols=245 Identities=31% Similarity=0.486 Sum_probs=230.9
Q ss_pred CCCCEEECCCCCCcc--cCCccCCCCCCCcEEeCCC-CcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCE
Q 039642 106 PHLGYLDLRINQFFG--IIPPQIGNLSMLKFLGLSF-NQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNG 182 (353)
Q Consensus 106 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 182 (353)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999999 8999999999999999995 9999899999999999999999999999899999999999999
Q ss_pred EEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCC-CCCEEEcccCCCccccCccccCCCCCCEEEcccCc
Q 039642 183 LNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLK-SLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNA 261 (353)
Q Consensus 183 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 261 (353)
|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999999999999999999999999999999999999998 999999999999999999999887 9999999999
Q ss_pred CcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCcc
Q 039642 262 LFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLS 341 (353)
Q Consensus 262 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 341 (353)
+++..|..+..+++|++|++++|.+++.++. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999976665 788999999999999999999999999999999999999999999986
Q ss_pred ccCCCCCCeeeC
Q 039642 342 LGNLTKLVTLYL 353 (353)
Q Consensus 342 ~~~l~~L~~L~l 353 (353)
..+++|+++++
T Consensus 288 -~~l~~L~~l~l 298 (313)
T 1ogq_A 288 -GNLQRFDVSAY 298 (313)
T ss_dssp -TTGGGSCGGGT
T ss_pred -ccccccChHHh
Confidence 77888887764
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=273.06 Aligned_cols=272 Identities=24% Similarity=0.221 Sum_probs=202.7
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
..++.++++++.+.+..+. .|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 3677888888888765555 788888888888888888877777888888888888888888755555677888888888
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcc
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG 240 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 240 (353)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 88888877667777778888888888887776666677777777777777777765444455666666666666666654
Q ss_pred ccCccccCCC------------------------CCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccC
Q 039642 241 SIPLSLGNLT------------------------KLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGN 296 (353)
Q Consensus 241 ~~~~~~~~l~------------------------~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 296 (353)
..+..+..++ +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 4444444444 5555555556665444456777788888888888888766667778
Q ss_pred CCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 297 LTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 297 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
+++|++|++++|++++..|..+..+++|+.|++++|++++..+..|..+++|++|+|
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 888888888888888777888888888888888888888766667788888888875
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=268.38 Aligned_cols=257 Identities=22% Similarity=0.195 Sum_probs=203.9
Q ss_pred CCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEE
Q 039642 80 AGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLL 159 (353)
Q Consensus 80 ~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 159 (353)
-.+++.++++++.+.+..+. .|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 35788888888888776566 78888888888888888887666677888888888888888887777777888888888
Q ss_pred EcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCC-------------
Q 039642 160 SFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLK------------- 226 (353)
Q Consensus 160 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~------------- 226 (353)
++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..++
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 8888887766666777777888888877777755444566666666666666666655444455554
Q ss_pred -----------CCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCcccc
Q 039642 227 -----------SLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLG 295 (353)
Q Consensus 227 -----------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 295 (353)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+.
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 455555555556533334678899999999999999887777889999999999999999988888999
Q ss_pred CCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccc
Q 039642 296 NLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGS 337 (353)
Q Consensus 296 ~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 337 (353)
.+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999999999999999977777789999999999999999854
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-33 Score=262.38 Aligned_cols=260 Identities=23% Similarity=0.241 Sum_probs=218.4
Q ss_pred CCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcC--CCCCCCCC
Q 039642 80 AGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPE--IGYLTHLK 157 (353)
Q Consensus 80 ~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~ 157 (353)
-.+++.++++++.+.+.++...|.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+.. +..+++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 3578889999988877776657888999999999999888888888888999999999998887654444 78888899
Q ss_pred EEEcccCcCCCCCccc-ccCCCCCCEEEcccCcCCccCCccCCCC----------------------------------C
Q 039642 158 LLSFSKNQLSGFIPHE-IGRLSSLNGLNLYSNFLKGSIPPSLGNL----------------------------------T 202 (353)
Q Consensus 158 ~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l----------------------------------~ 202 (353)
+|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+ +
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 9999988888766665 7788888888888888776555433221 3
Q ss_pred ---------------------------------------------------------------CccEEEcccCcccccCC
Q 039642 203 ---------------------------------------------------------------SLIYIDIGNNLLSGSIP 219 (353)
Q Consensus 203 ---------------------------------------------------------------~L~~L~l~~n~l~~~~~ 219 (353)
+|++|++++|.+.+..+
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 44455555555555567
Q ss_pred ccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCC
Q 039642 220 NEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTN 299 (353)
Q Consensus 220 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 299 (353)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 77899999999999999999888889999999999999999998888889999999999999999999888889999999
Q ss_pred CCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccC
Q 039642 300 LAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIP 339 (353)
Q Consensus 300 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 339 (353)
|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999997777778999999999999999998877
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-32 Score=266.67 Aligned_cols=108 Identities=22% Similarity=0.119 Sum_probs=63.0
Q ss_pred ccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcc-cCCccccCCCCCCeeeccCCcccccCCccCcCCCCC
Q 039642 246 LGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNG-SIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSL 324 (353)
Q Consensus 246 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L 324 (353)
+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 3344444444444444444444445555555555555555554 245555666666666666666666556666666666
Q ss_pred CEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 325 LDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 325 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
+.|++++|++++..|..+..+++|++|+|
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 66666666666666666666666666654
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-32 Score=266.43 Aligned_cols=269 Identities=26% Similarity=0.216 Sum_probs=191.8
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
.++.++++++.+.+..+. .+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSN-TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTT-TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHH-HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 578888888887754444 6788888888888888877 56777788888888888888887666667777788888888
Q ss_pred ccCcCCCCCcc-cccCCCCCCEEEcccCcCCccC--CccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCC
Q 039642 162 SKNQLSGFIPH-EIGRLSSLNGLNLYSNFLKGSI--PPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTL 238 (353)
Q Consensus 162 ~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 238 (353)
++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 88877655443 3677777777777777776544 55667777777777777777766666777777777777777777
Q ss_pred ccccCc-cccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCccc---CCccccCCCCCCeeeccCCcccccC
Q 039642 239 SGSIPL-SLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGS---IPFSLGNLTNLAILYIGINALSGSI 314 (353)
Q Consensus 239 ~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~---~~~~l~~~~~L~~L~ls~n~~~~~~ 314 (353)
++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 655443 366677777777777777666666666777777777777776642 2234666677777777777777666
Q ss_pred CccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 315 PNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 315 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
|..+..+++|+.|++++|++++..|..+..+++| +|++
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 6667777777777777777776666666666666 6553
No 14
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.1e-32 Score=247.28 Aligned_cols=276 Identities=24% Similarity=0.317 Sum_probs=240.6
Q ss_pred CCccceeeeCCC----------CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCC
Q 039642 69 PCTWFGIHCNHA----------GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLS 138 (353)
Q Consensus 69 ~c~~~~v~c~~~----------~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 138 (353)
.|.|..+.|... .+++.++++++.+.+..+. .+.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 367888888632 3789999999999866555 89999999999999999998889999999999999999
Q ss_pred CCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCC--ccCCccCCCCCCccEEEcccCcccc
Q 039642 139 FNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLK--GSIPPSLGNLTSLIYIDIGNNLLSG 216 (353)
Q Consensus 139 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~ 216 (353)
+|.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 6666554 89999999999999766677899999999999999986 3566777777 99999999999985
Q ss_pred cCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccC
Q 039642 217 SIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGN 296 (353)
Q Consensus 217 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 296 (353)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 555443 79999999999999877788999999999999999998888888999999999999999999 78888999
Q ss_pred CCCCCeeeccCCcccccCCccCcC------CCCCCEEeCcCCcCc--cccCccccCCCCCCeeeC
Q 039642 297 LTNLAILYIGINALSGSIPNEIGN------LKSLLDLRLDNNTLS--GSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 297 ~~~L~~L~ls~n~~~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L~l 353 (353)
+++|++|++++|++++..+..+.. .++|+.|++++|++. +..|..+..+++|+.+++
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 999999999999999776666654 367999999999998 677788999999999875
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.9e-32 Score=243.62 Aligned_cols=278 Identities=22% Similarity=0.278 Sum_probs=240.6
Q ss_pred CCCccceeeeCC----------CCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeC
Q 039642 68 SPCTWFGIHCNH----------AGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGL 137 (353)
Q Consensus 68 ~~c~~~~v~c~~----------~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 137 (353)
..|.+..+.|.. ...++.++++++.+.+..+. .+.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 346788888862 23788999999999865554 7999999999999999999888999999999999999
Q ss_pred CCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCc--cCCccCCCCCCccEEEcccCccc
Q 039642 138 SFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKG--SIPPSLGNLTSLIYIDIGNNLLS 215 (353)
Q Consensus 138 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~ 215 (353)
++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999998 5666554 799999999999997777789999999999999999863 66778889999999999999998
Q ss_pred ccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCcccc
Q 039642 216 GSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLG 295 (353)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 295 (353)
. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 4 555443 89999999999999877889999999999999999998877778889999999999999999 7888899
Q ss_pred CCCCCCeeeccCCcccccCCccCcC------CCCCCEEeCcCCcCcc--ccCccccCCCCCCeeeC
Q 039642 296 NLTNLAILYIGINALSGSIPNEIGN------LKSLLDLRLDNNTLSG--SIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 296 ~~~~L~~L~ls~n~~~~~~~~~~~~------~~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l 353 (353)
.+++|++|++++|++++..+..++. .+.++.+++++|++.. ..|..|..+++++.++|
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 326 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEe
Confidence 9999999999999999776666643 3789999999999873 56678888999998875
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-33 Score=269.80 Aligned_cols=270 Identities=22% Similarity=0.217 Sum_probs=246.4
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCc-CCCCCCCCCEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPP-EIGYLTHLKLL 159 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L 159 (353)
.+++.++++++.+. .+|. .+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|. .+..+++|++|
T Consensus 278 ~~L~~L~l~~n~l~-~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSCCS-CCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCccC-CCCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 58999999999987 6777 789999999999999999988888899999999999999998866655 48899999999
Q ss_pred EcccCcCCCCC--cccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCcc-CCCCCCCCEEEcccC
Q 039642 160 SFSKNQLSGFI--PHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNE-VGNLKSLSDLRLDNN 236 (353)
Q Consensus 160 ~L~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n 236 (353)
++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 99999998654 677899999999999999999888889999999999999999998776544 889999999999999
Q ss_pred CCccccCccccCCCCCCEEEcccCcCcCC---cchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCccccc
Q 039642 237 TLSGSIPLSLGNLTKLGTLYLHTNALFGS---IPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGS 313 (353)
Q Consensus 237 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~ 313 (353)
.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++.
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 99988888899999999999999999763 235688899999999999999988888999999999999999999999
Q ss_pred CCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 314 IPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 314 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
.|+.+..+++| .|++++|++++..|..+..+++|++|++
T Consensus 516 ~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 516 SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp GGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred ChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 99999999999 9999999999988988999999999985
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-32 Score=252.23 Aligned_cols=262 Identities=21% Similarity=0.210 Sum_probs=173.0
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.++++++.+. .+|...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 46777888888765 45554678889999999999988887777888899999999999988877777788889999999
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCC-------------
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKS------------- 227 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~------------- 227 (353)
+++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.. +..+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc
Confidence 9999888444444678889999999999888777777888888999999888877532 222233
Q ss_pred ---------------------------CCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEe
Q 039642 228 ---------------------------LSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQ 280 (353)
Q Consensus 228 ---------------------------L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 280 (353)
|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 33333333333321 2344455555555555555555555555555555555
Q ss_pred ccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 281 LSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 281 l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
+++|++++ ++.....+++|++|++++|+++ .+|..+..+++|+.|++++|++++. + +..+++|++|++
T Consensus 279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp CCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred CCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence 55555553 2333444555555555555555 3444455555566666666655532 2 445555555553
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-32 Score=265.77 Aligned_cols=261 Identities=21% Similarity=0.208 Sum_probs=176.2
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
+++.++++++.+. .+|...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 5677888888775 455546788999999999999999888888999999999999999999877778899999999999
Q ss_pred ccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCE-----------
Q 039642 162 SKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSD----------- 230 (353)
Q Consensus 162 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----------- 230 (353)
++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++.. ++.+++|+.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc
Confidence 999998655555788999999999999999888888899999999999999887542 222333333
Q ss_pred -----------------------------EEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEec
Q 039642 231 -----------------------------LRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQL 281 (353)
Q Consensus 231 -----------------------------L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 281 (353)
|++++|.+++ +..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence 3333333332 123444555555555555555555555555555555555
Q ss_pred cCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 282 SYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 282 ~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++. | +..+++|++|++
T Consensus 286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l 352 (597)
T 3oja_B 286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 352 (597)
T ss_dssp TTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred CCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEe
Confidence 5555553 2333444555555555555555 3444445555555555555555532 2 344455555543
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=274.21 Aligned_cols=282 Identities=23% Similarity=0.225 Sum_probs=200.8
Q ss_pred CccceeeeCCCCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccC-CccCCCCCCCcEEeCCCCcCCCCCCc
Q 039642 70 CTWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGII-PPQIGNLSMLKFLGLSFNQFSGSIPP 148 (353)
Q Consensus 70 c~~~~v~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~ 148 (353)
|.|..|.+ ...+++.+++++|.+.+..+. .|.++++|++|++++|...+.+ |..|.++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 34555555 456788888888887765555 7778888888888877554444 66777788888888888877766677
Q ss_pred CCCCCCCCCEEEcccCcCCCCCccc--ccCCCCCCEEEcccCcCCccCC-ccCCCCCCccEEEcccCcccccCCccCC--
Q 039642 149 EIGYLTHLKLLSFSKNQLSGFIPHE--IGRLSSLNGLNLYSNFLKGSIP-PSLGNLTSLIYIDIGNNLLSGSIPNEVG-- 223 (353)
Q Consensus 149 ~l~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~-- 223 (353)
.|.++++|++|++++|.+.+..|.. +.++++|++|++++|.+++..+ ..+.++++|++|++++|.+++..+..+.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 7777888888888888777655544 6777788888888777765544 4567777777777777776654444333
Q ss_pred ------------------------CCCC------CCEEEcccCCCccccCcccc--------------------------
Q 039642 224 ------------------------NLKS------LSDLRLDNNTLSGSIPLSLG-------------------------- 247 (353)
Q Consensus 224 ------------------------~~~~------L~~L~l~~n~~~~~~~~~~~-------------------------- 247 (353)
.+++ |+.|++++|.+++..+..+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 2222 66666666655433322211
Q ss_pred ----------C--CCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCC
Q 039642 248 ----------N--LTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIP 315 (353)
Q Consensus 248 ----------~--l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~ 315 (353)
. .++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 1 1567777777777766667777778888888888888887777777888888888888888887777
Q ss_pred ccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 316 NEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 316 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
..+..+++|+.|++++|++++..+..+..+++|++|++
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 78888888888888888888777777888888888864
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.9e-32 Score=257.13 Aligned_cols=129 Identities=28% Similarity=0.397 Sum_probs=73.3
Q ss_pred CCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcC--CcchhccCCCCCCEEeccCCcCcccCCc-cccCCC-
Q 039642 223 GNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFG--SIPYEIGNLKSLSDLQLSYNTLNGSIPF-SLGNLT- 298 (353)
Q Consensus 223 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~~~- 298 (353)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|. .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 345566666666666665555566666666666666666654 3445555666666666666666543333 233344
Q ss_pred ---------------------CCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCcc-ccCCCCCCeeeC
Q 039642 299 ---------------------NLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLS-LGNLTKLVTLYL 353 (353)
Q Consensus 299 ---------------------~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l 353 (353)
+|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|++|++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence 4555555555554 44555556666666666666666 34443 566666666654
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-32 Score=263.52 Aligned_cols=270 Identities=24% Similarity=0.233 Sum_probs=196.1
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.++++++.+.+..+. .+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+.++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 3799999999999876666 899999999999999999998888999999999999999999977666799999999999
Q ss_pred cccCcCCC-CCcccccCCCCCCEEEcccCcCCccCC-ccCCCCCCccEEEcccCcccccCCccCCC--------------
Q 039642 161 FSKNQLSG-FIPHEIGRLSSLNGLNLYSNFLKGSIP-PSLGNLTSLIYIDIGNNLLSGSIPNEVGN-------------- 224 (353)
Q Consensus 161 L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-------------- 224 (353)
+++|.+.+ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999986 356788999999999999998544554 57889999999999999998877777655
Q ss_pred ----------CCCCCEEEcccCCCcccc--Ccc-ccC-------------------------------------------
Q 039642 225 ----------LKSLSDLRLDNNTLSGSI--PLS-LGN------------------------------------------- 248 (353)
Q Consensus 225 ----------~~~L~~L~l~~n~~~~~~--~~~-~~~------------------------------------------- 248 (353)
+++|++|++++|.+++.. +.. ...
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 456666666666655420 000 000
Q ss_pred --------------------------------------------CCCCCEEEcccCcCcCCcchhc-cCCCCCCEEeccC
Q 039642 249 --------------------------------------------LTKLGTLYLHTNALFGSIPYEI-GNLKSLSDLQLSY 283 (353)
Q Consensus 249 --------------------------------------------l~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~l~~ 283 (353)
.++|++|++++|.+. .+|..+ ..+++|++|++++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence 112333333333332 233333 3566777777777
Q ss_pred CcCcccCC---ccccCCCCCCeeeccCCcccccCC--ccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 284 NTLNGSIP---FSLGNLTNLAILYIGINALSGSIP--NEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 284 n~l~~~~~---~~l~~~~~L~~L~ls~n~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
|++++.+| ..++.+++|++|++++|++++..+ ..+..+++|+.|++++|+++ .+|..+..+++|++|++
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEEC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEEC
Confidence 77765442 235566777777777777764322 34566777777777777777 56666666777776654
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.1e-31 Score=255.63 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=73.7
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.+++++|.+.+..+. .+.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 4677777777777654434 6777777777777777777776777777777777777777776 45544 667777777
Q ss_pred cccCcCCC-CCcccccCCCCCCEEEcccCcCC
Q 039642 161 FSKNQLSG-FIPHEIGRLSSLNGLNLYSNFLK 191 (353)
Q Consensus 161 L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~ 191 (353)
+++|.+.+ ..|..+.++++|++|++++|.++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 77777764 23456666677777776666554
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-33 Score=270.40 Aligned_cols=267 Identities=16% Similarity=0.267 Sum_probs=197.2
Q ss_pred CCCEEEEEeCCCCccee-----------------cCccccc--CCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCC
Q 039642 80 AGRVNSINLTSAGLKGT-----------------LHDFSFS--SFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFN 140 (353)
Q Consensus 80 ~~~v~~l~l~~~~l~~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 140 (353)
-.+++.++++++.+.|. +|. .+. ++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 35889999999999885 777 778 9999999999999999999999999999999999999
Q ss_pred c-CCC-CCCcCCCCC------CCCCEEEcccCcCCCCCcc--cccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcc
Q 039642 141 Q-FSG-SIPPEIGYL------THLKLLSFSKNQLSGFIPH--EIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIG 210 (353)
Q Consensus 141 ~-l~~-~~~~~l~~l------~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 210 (353)
. +++ .+|..+..+ ++|++|++++|.+. .+|. .+..+++|++|++++|.++|.+| .+..+++|++|+++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 8 887 677777665 88888888888888 7777 78888888888888888887777 66666666666666
Q ss_pred cCcccccCCccCCCCCC-CCEEEcccCCCc-------------------------cccCcccc-------CCCCCCEEEc
Q 039642 211 NNLLSGSIPNEVGNLKS-LSDLRLDNNTLS-------------------------GSIPLSLG-------NLTKLGTLYL 257 (353)
Q Consensus 211 ~n~l~~~~~~~~~~~~~-L~~L~l~~n~~~-------------------------~~~~~~~~-------~l~~L~~L~L 257 (353)
+|.++ .+|..+..+++ |++|++++|.++ +..|..+. .+++|++|++
T Consensus 362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 362 YNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred CCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 66666 55555555555 666665555555 33333333 3445555555
Q ss_pred ccCcCcCCcchhccCCCCCCEEeccCCcCcccCCcccc-C-------CCCCCeeeccCCcccccCCccCc--CCCCCCEE
Q 039642 258 HTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLG-N-------LTNLAILYIGINALSGSIPNEIG--NLKSLLDL 327 (353)
Q Consensus 258 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~-~-------~~~L~~L~ls~n~~~~~~~~~~~--~~~~L~~L 327 (353)
++|.+++..+..+..+++|++|++++|.++ .+|.... . +++|++|++++|+++ .+|..+. .+++|+.|
T Consensus 441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGI 518 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEE
T ss_pred cCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEE
Confidence 555554322233445667777777777776 4444322 2 227888888888887 6777776 88888888
Q ss_pred eCcCCcCccccCccccCCCCCCeeeC
Q 039642 328 RLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 328 ~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
++++|++++ +|..+..+++|++|+|
T Consensus 519 ~Ls~N~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp ECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred ECCCCCCCC-cChhhhcCCCCCEEEC
Confidence 888888886 8888888888888875
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.2e-31 Score=255.83 Aligned_cols=133 Identities=21% Similarity=0.126 Sum_probs=119.3
Q ss_pred ccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCC-cchhccCCCCCCEEeccCCcCcccCCccccCCC
Q 039642 220 NEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGS-IPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLT 298 (353)
Q Consensus 220 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 298 (353)
..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..|..+..++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 3456677788888888888877888899999999999999999874 788899999999999999999988888899999
Q ss_pred CCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCC-CCCeeeC
Q 039642 299 NLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLT-KLVTLYL 353 (353)
Q Consensus 299 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~l 353 (353)
+|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|++|++
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence 9999999999999988999999999999999999999 7888888887 5999875
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-31 Score=263.39 Aligned_cols=272 Identities=24% Similarity=0.267 Sum_probs=178.6
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.++++++.+.+..+. .|.++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4677888888877654333 677777888888887777777777777777777777777777744444577777777777
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCC--CCCCCCEEEcccCCC
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVG--NLKSLSDLRLDNNTL 238 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~~ 238 (353)
+++|.+.+..|..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 777777765556677777777777777777766666677777777777777766654433322 335556666655555
Q ss_pred ccccC---------------------------------------------------ccccCCC--CCCEEEcccCcCcCC
Q 039642 239 SGSIP---------------------------------------------------LSLGNLT--KLGTLYLHTNALFGS 265 (353)
Q Consensus 239 ~~~~~---------------------------------------------------~~~~~l~--~L~~L~L~~n~l~~~ 265 (353)
++..+ ..+..++ +|++|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 44333 3333332 256666666655555
Q ss_pred cchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccc-----cCCc----cCcCCCCCCEEeCcCCcCcc
Q 039642 266 IPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG-----SIPN----EIGNLKSLLDLRLDNNTLSG 336 (353)
Q Consensus 266 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~-----~~~~----~~~~~~~L~~L~l~~n~l~~ 336 (353)
.+..+..+++|++|++++|.+++..+..+..+++|+.|++++|...+ .+|. .+..+++|+.|++++|++++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 55555556666666666666655555555555666666665543332 1222 45667888888888888888
Q ss_pred ccCccccCCCCCCeeeC
Q 039642 337 SIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 337 ~~p~~~~~l~~L~~L~l 353 (353)
..|..+..+++|++|++
T Consensus 344 ~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSL 360 (680)
T ss_dssp CCTTTTTTCTTCCEEEC
T ss_pred CChhHhccccCCcEEEC
Confidence 77788888888888864
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=7.3e-31 Score=235.31 Aligned_cols=261 Identities=25% Similarity=0.309 Sum_probs=226.7
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
+++.++++++++. .+|. .+ .+.++.|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCc-cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4567889888876 3444 33 368999999999999888888999999999999999999877999999999999999
Q ss_pred ccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccc--cCCccCCCCCCCCEEEcccCCCc
Q 039642 162 SKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSG--SIPNEVGNLKSLSDLRLDNNTLS 239 (353)
Q Consensus 162 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~ 239 (353)
++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999998 5565554 799999999999997777778999999999999999863 66778899999999999999998
Q ss_pred cccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCc
Q 039642 240 GSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIG 319 (353)
Q Consensus 240 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~ 319 (353)
.+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 185 -~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 -TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp -SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred -cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 4555443 89999999999998888889999999999999999999877778899999999999999999 7888899
Q ss_pred CCCCCCEEeCcCCcCccccCccccCC------CCCCeeeC
Q 039642 320 NLKSLLDLRLDNNTLSGSIPLSLGNL------TKLVTLYL 353 (353)
Q Consensus 320 ~~~~L~~L~l~~n~l~~~~p~~~~~l------~~L~~L~l 353 (353)
.+++|+.|++++|++++..+..|... ++|+.+++
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 99999999999999997766666543 56777664
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=267.34 Aligned_cols=268 Identities=22% Similarity=0.244 Sum_probs=222.1
Q ss_pred CCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcC--CCCCCCCC
Q 039642 80 AGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPE--IGYLTHLK 157 (353)
Q Consensus 80 ~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~ 157 (353)
-.+++.++++++...+.+++..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.. +.++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 3578899999997777775558999999999999999999888989999999999999999998766654 88899999
Q ss_pred EEEcccCcCCCCCc-ccccCCCCCCEEEcccCcCCccCCccCC--------------------------CCC------Cc
Q 039642 158 LLSFSKNQLSGFIP-HEIGRLSSLNGLNLYSNFLKGSIPPSLG--------------------------NLT------SL 204 (353)
Q Consensus 158 ~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~--------------------------~l~------~L 204 (353)
+|++++|.+.+..+ ..+.++++|++|++++|.+++..+..+. .++ .|
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 99999999886544 5688899999999998887655443332 222 27
Q ss_pred cEEEcccCcccccCCccCC------------------------------------C--CCCCCEEEcccCCCccccCccc
Q 039642 205 IYIDIGNNLLSGSIPNEVG------------------------------------N--LKSLSDLRLDNNTLSGSIPLSL 246 (353)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~------------------------------------~--~~~L~~L~l~~n~~~~~~~~~~ 246 (353)
++|++++|.+++..+..+. . .++|+.|++++|.+.+..+..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 8888888866544433221 1 2689999999999998888899
Q ss_pred cCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCE
Q 039642 247 GNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLD 326 (353)
Q Consensus 247 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~ 326 (353)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 99999999999999998888888999999999999999999888889999999999999999999887888999999999
Q ss_pred EeCcCCcCccccCccccCCCCCCeee
Q 039642 327 LRLDNNTLSGSIPLSLGNLTKLVTLY 352 (353)
Q Consensus 327 L~l~~n~l~~~~p~~~~~l~~L~~L~ 352 (353)
|++++|.+++ ++ .+++|+.|+
T Consensus 367 L~Ls~N~l~~-i~----~~~~L~~L~ 387 (844)
T 3j0a_A 367 LDLRDNALTT-IH----FIPSIPDIF 387 (844)
T ss_dssp EEEETCCSCC-CS----SCCSCSEEE
T ss_pred EECCCCCCCc-cc----CCCCcchhc
Confidence 9999999984 33 256666665
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=1.2e-31 Score=257.22 Aligned_cols=263 Identities=25% Similarity=0.334 Sum_probs=170.1
Q ss_pred CCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCC-CCCcCCCCCCCCCE
Q 039642 80 AGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSG-SIPPEIGYLTHLKL 158 (353)
Q Consensus 80 ~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~ 158 (353)
-.+++.+++++|.+.+..+. .|.++++|++|++++|.++ .+|.. .+++|++|++++|.+++ ..|..+.++++|++
T Consensus 75 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 75 LSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp CTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred CCCccEEECCCCCCCcCCHH-HhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 45899999999999876666 8999999999999999998 45554 78999999999999985 34578889999999
Q ss_pred EEcccCcCCCCCcccccCCCCC--CEEEcccCcC----------------------------------------------
Q 039642 159 LSFSKNQLSGFIPHEIGRLSSL--NGLNLYSNFL---------------------------------------------- 190 (353)
Q Consensus 159 L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~---------------------------------------------- 190 (353)
|++++|.+.+.. +..+++| +.|++++|.+
T Consensus 151 L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 151 LGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp EEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred EecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 999998876422 2222222 4444444443
Q ss_pred -------------------------------------------------------------CccCCccC-----------
Q 039642 191 -------------------------------------------------------------KGSIPPSL----------- 198 (353)
Q Consensus 191 -------------------------------------------------------------~~~~~~~l----------- 198 (353)
++.+|..+
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 33333322
Q ss_pred ------------------------------------------CCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccC
Q 039642 199 ------------------------------------------GNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNN 236 (353)
Q Consensus 199 ------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 236 (353)
..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred ehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 33445555555555555545555555555555555555
Q ss_pred CCcc--ccCccccCCCCCCEEEcccCcCcCCcch-hccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCccccc
Q 039642 237 TLSG--SIPLSLGNLTKLGTLYLHTNALFGSIPY-EIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGS 313 (353)
Q Consensus 237 ~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~ 313 (353)
.+++ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .
T Consensus 388 ~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ 464 (562)
T 3a79_B 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-S 464 (562)
T ss_dssp CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-C
T ss_pred CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-c
Confidence 5553 2233455555555555555555443332 244455555555555555544443332 56777777777776 5
Q ss_pred CCccCcCCCCCCEEeCcCCcCccccCcc-ccCCCCCCeeeC
Q 039642 314 IPNEIGNLKSLLDLRLDNNTLSGSIPLS-LGNLTKLVTLYL 353 (353)
Q Consensus 314 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l 353 (353)
+|..+..+++|+.|++++|+++ .+|.. +..+++|++|++
T Consensus 465 ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 465 IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence 6666667788888888888888 45554 777788887764
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.98 E-value=2.2e-31 Score=236.12 Aligned_cols=253 Identities=25% Similarity=0.263 Sum_probs=165.6
Q ss_pred CCccceeeeCCCCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCC--C
Q 039642 69 PCTWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGS--I 146 (353)
Q Consensus 69 ~c~~~~v~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~ 146 (353)
.|.|.++.|... ++. .+|. .+ .++|++|++++|.++...+..+.++++|++|++++|.++.. .
T Consensus 6 ~C~~~~l~c~~~-----------~l~-~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 6 SCSGTEIRCNSK-----------GLT-SVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp EEETTEEECCSS-----------CCS-SCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred eeCCCEEEcCCC-----------Ccc-cCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence 478888887632 221 2222 11 24677777777777654444566777777777777766522 2
Q ss_pred CcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCC-ccCCCCCCccEEEcccCcccccCCccCCCC
Q 039642 147 PPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIP-PSLGNLTSLIYIDIGNNLLSGSIPNEVGNL 225 (353)
Q Consensus 147 ~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 225 (353)
+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred ccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 344455677777777777666 455556667777777777777664433 456667777777777777766666666777
Q ss_pred CCCCEEEcccCCCcc-ccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeee
Q 039642 226 KSLSDLRLDNNTLSG-SIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILY 304 (353)
Q Consensus 226 ~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 304 (353)
++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 777777777777765 4566667777777777777777666666666777777777777777655555566677777777
Q ss_pred ccCCcccccCCccCcCCC-CCCEEeCcCCcCccc
Q 039642 305 IGINALSGSIPNEIGNLK-SLLDLRLDNNTLSGS 337 (353)
Q Consensus 305 ls~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~ 337 (353)
+++|++++..|..+..++ +|+.|++++|++++.
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 777777766666666663 677777777776643
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=1.7e-30 Score=252.45 Aligned_cols=134 Identities=27% Similarity=0.304 Sum_probs=113.2
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
..++.++|++|.+++..+. .|.++++|++|++++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3799999999999854444 899999999999999999988888899999999999999999866666789999999999
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCc-cCCccCCCCCCccEEEcccCccc
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKG-SIPPSLGNLTSLIYIDIGNNLLS 215 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~ 215 (353)
+++|.+++..+..|.++++|++|++++|.+++ ..|..+..+++|++|++++|.++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99999987666678889999999999988864 35666777888888888777543
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=6.7e-31 Score=249.88 Aligned_cols=137 Identities=27% Similarity=0.373 Sum_probs=92.4
Q ss_pred CCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcc--ccCccccCCCCCCEEEcccCcCcC------------
Q 039642 199 GNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG--SIPLSLGNLTKLGTLYLHTNALFG------------ 264 (353)
Q Consensus 199 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~------------ 264 (353)
..+++|++|++++|.+++..|..++.+++|++|++++|.+++ .+|..+..+++|++|++++|.+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 344556666666666665555555566666666666665553 333444555555555555555544
Q ss_pred -------------CcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCcc-CcCCCCCCEEeCc
Q 039642 265 -------------SIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNE-IGNLKSLLDLRLD 330 (353)
Q Consensus 265 -------------~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~-~~~~~~L~~L~l~ 330 (353)
..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence 3333222 57777777788777 67777778999999999999999 56654 8899999999999
Q ss_pred CCcCccccC
Q 039642 331 NNTLSGSIP 339 (353)
Q Consensus 331 ~n~l~~~~p 339 (353)
+|++++..+
T Consensus 477 ~N~~~c~c~ 485 (520)
T 2z7x_B 477 TNPWDCSCP 485 (520)
T ss_dssp SSCBCCCHH
T ss_pred CCCCcccCC
Confidence 999997554
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=2.1e-31 Score=238.34 Aligned_cols=220 Identities=23% Similarity=0.287 Sum_probs=205.4
Q ss_pred CCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEE
Q 039642 129 LSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYID 208 (353)
Q Consensus 129 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 208 (353)
.+.+++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467899999999998 78888989999999999999999 88989999999999999999999 7899999999999999
Q ss_pred cccCcccccCCccCCC---------CCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEE
Q 039642 209 IGNNLLSGSIPNEVGN---------LKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDL 279 (353)
Q Consensus 209 l~~n~l~~~~~~~~~~---------~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 279 (353)
+++|.+.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 9999988888887764 999999999999998 788889999999999999999975 56678999999999
Q ss_pred eccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 280 QLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 280 ~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.+++
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-30 Score=234.23 Aligned_cols=260 Identities=25% Similarity=0.267 Sum_probs=226.0
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
+++.++++++++. .+|. .+ .++++.|++++|.+.+..+..+.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4567899998876 5555 33 378999999999999888889999999999999999999777889999999999999
Q ss_pred ccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccc--cCCccCCCCCCCCEEEcccCCCc
Q 039642 162 SKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSG--SIPNEVGNLKSLSDLRLDNNTLS 239 (353)
Q Consensus 162 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~ 239 (353)
++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999998 5665554 799999999999997666678999999999999999963 667777777 9999999999998
Q ss_pred cccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCc
Q 039642 240 GSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIG 319 (353)
Q Consensus 240 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~ 319 (353)
+ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 5 665544 79999999999998888888999999999999999999877778899999999999999999 7888899
Q ss_pred CCCCCCEEeCcCCcCccccCccccCC------CCCCeeeC
Q 039642 320 NLKSLLDLRLDNNTLSGSIPLSLGNL------TKLVTLYL 353 (353)
Q Consensus 320 ~~~~L~~L~l~~n~l~~~~p~~~~~l------~~L~~L~l 353 (353)
.+++|+.|++++|++++..+..+... ++|+.|++
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence 99999999999999997777766653 56777764
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.7e-31 Score=264.80 Aligned_cols=263 Identities=19% Similarity=0.266 Sum_probs=167.0
Q ss_pred CCCEEEEEeCCCCcce-----------------ecCccccc--CCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCC
Q 039642 80 AGRVNSINLTSAGLKG-----------------TLHDFSFS--SFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFN 140 (353)
Q Consensus 80 ~~~v~~l~l~~~~l~~-----------------~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 140 (353)
-.+++.+++++|.+.+ .+|. .++ ++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 3578899999999887 3776 666 8999999999999888888888888888999999888
Q ss_pred c-CCC-CCCcCCC-------CCCCCCEEEcccCcCCCCCcc--cccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEc
Q 039642 141 Q-FSG-SIPPEIG-------YLTHLKLLSFSKNQLSGFIPH--EIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDI 209 (353)
Q Consensus 141 ~-l~~-~~~~~l~-------~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 209 (353)
. +++ .+|..+. .+++|++|++++|.+. .+|. .+.++++|+.|++++|.++ .+| .+..+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 7 776 5665433 4457888888888877 6776 7777788888888888777 666 6777777777777
Q ss_pred ccCcccccCCccCCCCCC-CCEEEcccCCCccccCccccCC-------------------------------CCCCEEEc
Q 039642 210 GNNLLSGSIPNEVGNLKS-LSDLRLDNNTLSGSIPLSLGNL-------------------------------TKLGTLYL 257 (353)
Q Consensus 210 ~~n~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~l-------------------------------~~L~~L~L 257 (353)
++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+ ++|++|++
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 777776 66666666666 777777666665 444333322 13444444
Q ss_pred ccCcCcCCcchh-ccCCCCCCEEeccCCcCcccCCccccC--------CCCCCeeeccCCcccccCCccCc--CCCCCCE
Q 039642 258 HTNALFGSIPYE-IGNLKSLSDLQLSYNTLNGSIPFSLGN--------LTNLAILYIGINALSGSIPNEIG--NLKSLLD 326 (353)
Q Consensus 258 ~~n~l~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~l~~--------~~~L~~L~ls~n~~~~~~~~~~~--~~~~L~~ 326 (353)
++|.++ .+|.. +..+++|+.|++++|.++ .+|..+.. +++|++|+|++|+++ .+|..+. .+++|+.
T Consensus 681 s~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 681 SYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSN 757 (876)
T ss_dssp CSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCE
T ss_pred cCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCE
Confidence 444443 22222 224455555555555555 33332211 124555555555554 4444443 4555555
Q ss_pred EeCcCCcCccccCccccCCCCCCeee
Q 039642 327 LRLDNNTLSGSIPLSLGNLTKLVTLY 352 (353)
Q Consensus 327 L~l~~n~l~~~~p~~~~~l~~L~~L~ 352 (353)
|+|++|++++ +|..+..+++|++|+
T Consensus 758 L~Ls~N~L~~-lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 758 MDVSYNCFSS-FPTQPLNSSQLKAFG 782 (876)
T ss_dssp EECCSSCCSS-CCCGGGGCTTCCEEE
T ss_pred EEeCCCCCCc-cchhhhcCCCCCEEE
Confidence 5555555553 444444455555444
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=5.4e-30 Score=251.30 Aligned_cols=270 Identities=24% Similarity=0.237 Sum_probs=146.4
Q ss_pred EEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCC---------------------------------C
Q 039642 83 VNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGN---------------------------------L 129 (353)
Q Consensus 83 v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---------------------------------l 129 (353)
++.++++++.+.+..+. .+..+++|++|++++|.+.+..+..+.+ +
T Consensus 250 L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCEEECTTSCCCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCEEECCCCCcCccCcc-cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 56666666666544444 5566666666666666555544444443 4
Q ss_pred CCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCc----------------------------CCCCCcccccCCCCCC
Q 039642 130 SMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQ----------------------------LSGFIPHEIGRLSSLN 181 (353)
Q Consensus 130 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~----------------------------~~~~~~~~l~~l~~L~ 181 (353)
++|++|++++|.+.+..+..|.++++|++|++++|. +.+..|..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 444444444444444444444444444444444332 2222233333444444
Q ss_pred EEEcccCcCCccCC-ccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCc--cccCccccCCCCCCEEEcc
Q 039642 182 GLNLYSNFLKGSIP-PSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLS--GSIPLSLGNLTKLGTLYLH 258 (353)
Q Consensus 182 ~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~ 258 (353)
.|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|++|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 44444444433332 23344444444444444444333334444444444444444443 2445566666777777777
Q ss_pred cCcCcCCcchhccCCCCCCEEeccCCcCcccC--------CccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCc
Q 039642 259 TNALFGSIPYEIGNLKSLSDLQLSYNTLNGSI--------PFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLD 330 (353)
Q Consensus 259 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~--------~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~ 330 (353)
+|.+++..+..+..+++|++|++++|++++.. +..+..+++|+.|++++|+++...+..+..+++|+.|+++
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 77776665666666777777777777766421 1125566777777777777764333456777777777777
Q ss_pred CCcCccccCccccCCCCCCeeeC
Q 039642 331 NNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 331 ~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
+|++++..+..|..+++|++|++
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCcCCHhHhCCCCCCCEEEC
Confidence 77777555555667777777664
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=239.72 Aligned_cols=228 Identities=25% Similarity=0.209 Sum_probs=176.3
Q ss_pred CCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEc
Q 039642 106 PHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNL 185 (353)
Q Consensus 106 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 185 (353)
++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57788888888887777777888888888888888887666677778888888888888887655556777888888888
Q ss_pred ccCcCCccCCccCCCCCCccEEEcccCc-ccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcC
Q 039642 186 YSNFLKGSIPPSLGNLTSLIYIDIGNNL-LSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFG 264 (353)
Q Consensus 186 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 264 (353)
++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 8888876666677788888888888754 33333446777888888888888877 444 46777888888888888877
Q ss_pred CcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCc
Q 039642 265 SIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 265 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 335 (353)
..|..+..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77777888888888888888888777777788888888888888888666667777888888888888764
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=250.12 Aligned_cols=108 Identities=23% Similarity=0.230 Sum_probs=65.0
Q ss_pred ccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCc-ccCCccccCCCCCCeeeccCCcccccCCccCcCCCCC
Q 039642 246 LGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLN-GSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSL 324 (353)
Q Consensus 246 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L 324 (353)
+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 344455555555555554445555555566666666666655 3455556666666666666666666556666666666
Q ss_pred CEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 325 LDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 325 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
+.|++++|++++..|..+..+++|++|++
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 66666666666655566666666666654
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=249.77 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=77.5
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.++++++.+.+..+. .|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp SSCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCceEEECCCCcCCccCcc-cccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 4667777777776654333 677777777777777777766666777777777777777777644444577777777777
Q ss_pred cccCcCCC-CCcccccCCCCCCEEEcccCcCCc
Q 039642 161 FSKNQLSG-FIPHEIGRLSSLNGLNLYSNFLKG 192 (353)
Q Consensus 161 L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~ 192 (353)
+++|.+.+ .+|..+.++++|++|++++|.+++
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 77777765 357777777788888877776553
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.9e-31 Score=238.65 Aligned_cols=256 Identities=19% Similarity=0.184 Sum_probs=183.0
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
+++.++++++.+.+..+. .+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 677888888877754333 6777888888888888887777777778888888888888877443344677788888888
Q ss_pred ccCcCCCCCc-ccccCCCCCCEEEcccC-cCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCc
Q 039642 162 SKNQLSGFIP-HEIGRLSSLNGLNLYSN-FLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLS 239 (353)
Q Consensus 162 ~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 239 (353)
++|.+....+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 8887774333 35777788888888877 355555566777788888888888877777777777888888888888775
Q ss_pred cccCccccCCCCCCEEEcccCcCcCCcchhc---cCCCCCCEEeccCCcCcc----cCCccccCCCCCCeeeccCCcccc
Q 039642 240 GSIPLSLGNLTKLGTLYLHTNALFGSIPYEI---GNLKSLSDLQLSYNTLNG----SIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 240 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
......+..+++|++|++++|.+++..+..+ ...+.++.++++++.+++ .+|..+..+++|++|++++|+++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 3322334456778888888887766544332 234567777777777765 34556777888888888888888
Q ss_pred cCCcc-CcCCCCCCEEeCcCCcCccccC
Q 039642 313 SIPNE-IGNLKSLLDLRLDNNTLSGSIP 339 (353)
Q Consensus 313 ~~~~~-~~~~~~L~~L~l~~n~l~~~~p 339 (353)
.+|.. +..+++|+.|++++|++++..|
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 45554 4788888888888888887655
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=4.9e-30 Score=239.66 Aligned_cols=228 Identities=23% Similarity=0.210 Sum_probs=191.9
Q ss_pred CCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEc
Q 039642 106 PHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNL 185 (353)
Q Consensus 106 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 185 (353)
+++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57889999999988888888888999999999999888777788888999999999999888666667888899999999
Q ss_pred ccCcCCccCCccCCCCCCccEEEcccCc-ccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcC
Q 039642 186 YSNFLKGSIPPSLGNLTSLIYIDIGNNL-LSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFG 264 (353)
Q Consensus 186 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 264 (353)
++|.++...+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 9998886666678888999999998854 443334467888999999999998874 44 57788899999999999988
Q ss_pred CcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCc
Q 039642 265 SIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 265 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 335 (353)
..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 88888888999999999999998877778888899999999999998777777888899999999998765
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=8e-30 Score=233.77 Aligned_cols=246 Identities=21% Similarity=0.209 Sum_probs=195.8
Q ss_pred CCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEE
Q 039642 104 SFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGL 183 (353)
Q Consensus 104 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 183 (353)
.+++++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 56899999999999887666667889999999999999997777789999999999999999998888889999999999
Q ss_pred EcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccC---------------
Q 039642 184 NLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGN--------------- 248 (353)
Q Consensus 184 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--------------- 248 (353)
++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.....+..
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 99999999544445689999999999999999888888999999999999999987532221111
Q ss_pred ----------------------CCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeecc
Q 039642 249 ----------------------LTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIG 306 (353)
Q Consensus 249 ----------------------l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls 306 (353)
.++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 12455555555555432 346667788888888888877667777778888888888
Q ss_pred CCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 307 INALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 307 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
+|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|++|++
T Consensus 281 ~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 281 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp SSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 888874 4555667788888888888877 56666777778887765
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=9.9e-30 Score=225.49 Aligned_cols=241 Identities=22% Similarity=0.163 Sum_probs=210.8
Q ss_pred CEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCC--CcccccCCCCCCEEEcc
Q 039642 109 GYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGF--IPHEIGRLSSLNGLNLY 186 (353)
Q Consensus 109 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~ 186 (353)
+.++.+++.++. +|..+ .++|++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 467888877763 45433 36899999999999954444578999999999999998732 35667788999999999
Q ss_pred cCcCCccCCccCCCCCCccEEEcccCcccccCC-ccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcC-
Q 039642 187 SNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIP-NEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFG- 264 (353)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~- 264 (353)
+|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99988 567778899999999999999986554 578899999999999999998888889999999999999999976
Q ss_pred CcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccC
Q 039642 265 SIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGN 344 (353)
Q Consensus 265 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 344 (353)
..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 57888899999999999999999887888999999999999999999877778899999999999999999999999999
Q ss_pred CC-CCCeeeC
Q 039642 345 LT-KLVTLYL 353 (353)
Q Consensus 345 l~-~L~~L~l 353 (353)
++ +|++|++
T Consensus 246 ~~~~L~~L~L 255 (306)
T 2z66_A 246 FPSSLAFLNL 255 (306)
T ss_dssp CCTTCCEEEC
T ss_pred hhccCCEEEc
Confidence 85 9999986
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.1e-29 Score=225.39 Aligned_cols=255 Identities=26% Similarity=0.374 Sum_probs=166.5
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.++++++.+.+. + .+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+ ++. +..+++|++|+
T Consensus 66 ~~L~~L~l~~n~i~~~-~--~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDI-S--PLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLN 138 (347)
T ss_dssp TTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred CCccEEEccCCccccc-h--hhhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEE
Confidence 4677888887777642 2 267777777777777777652 346777777777777777763 333 56666777777
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCC--------------------c
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIP--------------------N 220 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--------------------~ 220 (353)
+++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ .
T Consensus 139 l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp CTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc
Confidence 76664443332 35555566666666555543221 4445555555555554442211 1
Q ss_pred cCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCC
Q 039642 221 EVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNL 300 (353)
Q Consensus 221 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 300 (353)
.+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|
T Consensus 216 ~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 216 PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 15566677777777777764322 66777777777777777543 3466777888888888877743 346777888
Q ss_pred CeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 301 AILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 301 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
++|++++|++++..+..+..+++|+.|++++|++++..| +..+++|++|++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 888888888877777777788888888888888886555 677788888765
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=6.7e-30 Score=224.29 Aligned_cols=256 Identities=21% Similarity=0.184 Sum_probs=206.6
Q ss_pred EEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEccc
Q 039642 84 NSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSK 163 (353)
Q Consensus 84 ~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 163 (353)
+.++.+++++. .+|. ...++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666665 3333 2346899999999999888778889999999999999999877788899999999999999
Q ss_pred Cc-CCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcccc
Q 039642 164 NQ-LSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSI 242 (353)
Q Consensus 164 n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 242 (353)
|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 77666778888999999999999998777888888999999999999998776677888999999999999998665
Q ss_pred CccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCC
Q 039642 243 PLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLK 322 (353)
Q Consensus 243 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~ 322 (353)
+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+.. .-..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 667888999999999999998887888888999999999999998765566888999999999999887543221 1112
Q ss_pred CCCEEeCcCCcCccccCccccC
Q 039642 323 SLLDLRLDNNTLSGSIPLSLGN 344 (353)
Q Consensus 323 ~L~~L~l~~n~l~~~~p~~~~~ 344 (353)
.++.+..+.+.+....|..+.+
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HHHHCCSEECCCBEEESGGGTT
T ss_pred HHHhcccccCccccCCchHhCC
Confidence 2444556777787778876654
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=3.3e-30 Score=233.19 Aligned_cols=272 Identities=23% Similarity=0.253 Sum_probs=224.6
Q ss_pred CCCCccceeeeCCCCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCC
Q 039642 67 ISPCTWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSI 146 (353)
Q Consensus 67 ~~~c~~~~v~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 146 (353)
...|.|.++ |+ .+++++. .+|. .+ .++|++|++++|.+++..+..+.++++|++|++++|.+++..
T Consensus 27 ~~~C~~~~~-c~---------~~~~~l~-~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (353)
T 2z80_A 27 SLSCDRNGI-CK---------GSSGSLN-SIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92 (353)
T ss_dssp CCEECTTSE-EE---------CCSTTCS-SCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CCCCCCCeE-ee---------CCCCCcc-cccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence 345777665 43 3445554 4454 33 258999999999999877778999999999999999999777
Q ss_pred CcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCC-ccCCCCCCccEEEcccCc-ccccCCccCCC
Q 039642 147 PPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIP-PSLGNLTSLIYIDIGNNL-LSGSIPNEVGN 224 (353)
Q Consensus 147 ~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~ 224 (353)
+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +.+..+..+..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 8889999999999999999996555558999999999999999984433 378899999999999994 67666778999
Q ss_pred CCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccc---cCCCCCC
Q 039642 225 LKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSL---GNLTNLA 301 (353)
Q Consensus 225 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l---~~~~~L~ 301 (353)
+++|++|++++|.+++..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+ ...+.++
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence 9999999999999998889999999999999999999854444445568999999999999987544433 3457788
Q ss_pred eeeccCCcccc----cCCccCcCCCCCCEEeCcCCcCccccCcc-ccCCCCCCeeeC
Q 039642 302 ILYIGINALSG----SIPNEIGNLKSLLDLRLDNNTLSGSIPLS-LGNLTKLVTLYL 353 (353)
Q Consensus 302 ~L~ls~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l 353 (353)
.++++++.+++ .+|+.+..+++|+.|++++|+++ .+|.. +..+++|++|++
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEe
Confidence 99999998876 46778899999999999999999 66665 589999999986
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=9.1e-29 Score=231.09 Aligned_cols=222 Identities=25% Similarity=0.250 Sum_probs=201.9
Q ss_pred CCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEc
Q 039642 130 SMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDI 209 (353)
Q Consensus 130 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 209 (353)
+++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 58999999999999888889999999999999999999888889999999999999999999777777899999999999
Q ss_pred ccCcccccCCccCCCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcc
Q 039642 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIP-LSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNG 288 (353)
Q Consensus 210 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 288 (353)
++|.+++..+..+..+++|++|++++|...+.++ ..+..+++|++|++++|.+++. | .+..+++|++|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 9999997777789999999999999965444444 4688999999999999999654 4 47788999999999999998
Q ss_pred cCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 289 SIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 289 ~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|++|+|
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 88889999999999999999999998999999999999999999999877788899999999986
No 47
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=7.5e-29 Score=223.70 Aligned_cols=255 Identities=27% Similarity=0.436 Sum_probs=200.5
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.++++++.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i~~-~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred ccccEEEEeCCcccc-ch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEE
Confidence 478899999998864 33 48889999999999999986533 8899999999999999984 44 589999999999
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcc
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG 240 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 240 (353)
+++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 999999854 33 8899999999999997664444 48899999999999999885433 7788899999999888764
Q ss_pred ccC--------------------ccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCC
Q 039642 241 SIP--------------------LSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNL 300 (353)
Q Consensus 241 ~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 300 (353)
..+ ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|
T Consensus 192 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 267 (347)
T 4fmz_A 192 ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKL 267 (347)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence 221 014455666777777776654433 66777777777777777642 356777888
Q ss_pred CeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 301 AILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 301 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
++|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|++|++
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 8888888888753 34778888888899888888888888888888888875
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.4e-28 Score=229.10 Aligned_cols=222 Identities=25% Similarity=0.253 Sum_probs=201.7
Q ss_pred CCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEc
Q 039642 130 SMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDI 209 (353)
Q Consensus 130 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 209 (353)
+++++|++++|.+.+..+..|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 68999999999999777889999999999999999999777788999999999999999999766678999999999999
Q ss_pred ccCcccccCCccCCCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcc
Q 039642 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIP-LSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNG 288 (353)
Q Consensus 210 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 288 (353)
++|.+.+..+..+..+++|++|++++|...+.++ ..+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 9999998777789999999999999965444444 47889999999999999996 455 47788999999999999998
Q ss_pred cCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 289 SIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 289 ~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
..+..+..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|++|+|
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 88889999999999999999999999999999999999999999999877888899999999986
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.6e-29 Score=244.05 Aligned_cols=246 Identities=21% Similarity=0.207 Sum_probs=202.7
Q ss_pred CCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEE
Q 039642 104 SFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGL 183 (353)
Q Consensus 104 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 183 (353)
.+++++.++++++.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..|..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46789999999999987777778889999999999999998777899999999999999999998888888999999999
Q ss_pred EcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccC---------------
Q 039642 184 NLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGN--------------- 248 (353)
Q Consensus 184 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--------------- 248 (353)
++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.....+..
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 99999999665556789999999999999999888888999999999999999987532222111
Q ss_pred ----------------------CCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeecc
Q 039642 249 ----------------------LTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIG 306 (353)
Q Consensus 249 ----------------------l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls 306 (353)
.++|+.|++++|.+++ +..+..+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 1235555555555544 2456777888888888888887777788888888888888
Q ss_pred CCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 307 INALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 307 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
+|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|++|+|
T Consensus 287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331 (597)
T ss_dssp TSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence 888885 4556677888888888888888 67777788888888875
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.1e-28 Score=216.46 Aligned_cols=228 Identities=23% Similarity=0.229 Sum_probs=202.2
Q ss_pred CEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccC
Q 039642 109 GYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSN 188 (353)
Q Consensus 109 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 188 (353)
+.++.+++.++. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678888888764 45433 468999999999999776778999999999999999999777889999999999999999
Q ss_pred c-CCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcc
Q 039642 189 F-LKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIP 267 (353)
Q Consensus 189 ~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 267 (353)
. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 776668889999999999999999998888889999999999999999997666778999999999999999977666
Q ss_pred hhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccC
Q 039642 268 YEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIP 339 (353)
Q Consensus 268 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 339 (353)
..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++....+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 678899999999999999998888899999999999999999997666778999999999999999985443
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=3.1e-29 Score=239.87 Aligned_cols=180 Identities=26% Similarity=0.290 Sum_probs=148.7
Q ss_pred CCccceeeeCCCCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCc
Q 039642 69 PCTWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPP 148 (353)
Q Consensus 69 ~c~~~~v~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 148 (353)
.|.|.++ |+ .++++++ .+|. .+ .++|++|++++|.+++..|..|.++++|++|++++|.+++..|.
T Consensus 3 ~C~~~~~-c~---------~~~~~l~-~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CD---------GRSRSFT-SIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EE---------CTTSCCS-SCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EE---------CCCCccc-cccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4888877 74 2344444 4555 33 27899999999999998889999999999999999999988888
Q ss_pred CCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCc-cCCccCCCCCCccEEEcccCcccccCC-ccCCCCC
Q 039642 149 EIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKG-SIPPSLGNLTSLIYIDIGNNLLSGSIP-NEVGNLK 226 (353)
Q Consensus 149 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~ 226 (353)
.|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.++ ..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 89999999999999999998777779999999999999999986 356788999999999999998544554 6799999
Q ss_pred CCCEEEcccCCCccccCccccCCCCCCEEEcccCcC
Q 039642 227 SLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNAL 262 (353)
Q Consensus 227 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 262 (353)
+|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 999999999999987887776655555555444443
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=8.4e-31 Score=233.51 Aligned_cols=256 Identities=19% Similarity=0.152 Sum_probs=203.1
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
+.+..+++.+.+...... .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALAS-LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHH-HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHH-HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 455566666666544433 56677889999999999988777888899999999999999875443 788899999999
Q ss_pred ccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccc
Q 039642 162 SKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGS 241 (353)
Q Consensus 162 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 241 (353)
++|.+.+. ...++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99988732 2347899999999998865443 357899999999999877777788889999999999999876
Q ss_pred cCccc-cCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcC
Q 039642 242 IPLSL-GNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGN 320 (353)
Q Consensus 242 ~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~ 320 (353)
.+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 66655 4688999999999998654 32 3357899999999999985 4455888899999999999998 57777888
Q ss_pred CCCCCEEeCcCCcCc-cccCccccCCCCCCeee
Q 039642 321 LKSLLDLRLDNNTLS-GSIPLSLGNLTKLVTLY 352 (353)
Q Consensus 321 ~~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~ 352 (353)
+++|+.|++++|+++ +.+|..+..+++|+.++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 999999999999998 77777777777666553
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.6e-31 Score=237.63 Aligned_cols=244 Identities=19% Similarity=0.214 Sum_probs=184.2
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCc-ccCCccCC-------CCCCCcEEeCCCCcCCCCCCcCC--C
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFF-GIIPPQIG-------NLSMLKFLGLSFNQFSGSIPPEI--G 151 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~l--~ 151 (353)
+++.++++++.+ .+|. .+... |+.|++++|.+. ..++..+. ++++|++|++++|.+++..|..+ .
T Consensus 44 ~L~~l~l~~n~l--~~p~-~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLG-QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT--CCCH-HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc--ccHH-HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 455666677776 4554 33332 788888888873 44555544 67888899999888887788765 7
Q ss_pred CCCCCCEEEcccCcCCCCCcccccCC-----CCCCEEEcccCcCCccCCccCCCCCCccEEEcccCccccc--CCccC--
Q 039642 152 YLTHLKLLSFSKNQLSGFIPHEIGRL-----SSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGS--IPNEV-- 222 (353)
Q Consensus 152 ~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~-- 222 (353)
.+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 888899999998888866 6666655 7888899988888877778888888888999988887654 22233
Q ss_pred CCCCCCCEEEcccCCCcc--ccC-ccccCCCCCCEEEcccCcCcCCcc-hhccCCCCCCEEeccCCcCcccCCccccCCC
Q 039642 223 GNLKSLSDLRLDNNTLSG--SIP-LSLGNLTKLGTLYLHTNALFGSIP-YEIGNLKSLSDLQLSYNTLNGSIPFSLGNLT 298 (353)
Q Consensus 223 ~~~~~L~~L~l~~n~~~~--~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 298 (353)
..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 778888888888888873 222 334567888888888888877664 34556788888888888888 6676655 7
Q ss_pred CCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCcc
Q 039642 299 NLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSG 336 (353)
Q Consensus 299 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 336 (353)
+|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 888888888888855 65 7888888888888888875
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.8e-27 Score=222.10 Aligned_cols=205 Identities=20% Similarity=0.221 Sum_probs=100.7
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
+++.++++++.+.+. + .+..+++|++|++++|.+++. + +..+++|++|++++|.+++. + +.++++|++|++
T Consensus 43 ~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TCCEEECCSSCCCCC-T--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCEEEccCCCcccC-h--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 455566666555542 2 355556666666666655543 2 55555566666666555532 2 555555666666
Q ss_pred ccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccc
Q 039642 162 SKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGS 241 (353)
Q Consensus 162 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 241 (353)
++|.+.+ ++ +..+++|++|++++|.+++. + +..+++|++|++++|...+.+ .+..+++|++|++++|.+++
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 6555553 22 45555555555555555532 1 444555555555555333332 24444455555555554443
Q ss_pred cCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 242 IPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 242 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
+| +..+++|++|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 22 34444444444444444332 13344444444444444443 22 3344444444444444443
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=6.7e-28 Score=226.07 Aligned_cols=254 Identities=32% Similarity=0.418 Sum_probs=139.2
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.++++++.+.+.. .+.++++|++|++++|.+.+..+ +.++++|++|++++|.+++. +. +..+++|++|+
T Consensus 68 ~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEE
T ss_pred cCCCEEECCCCccCCch---hhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEE
Confidence 46788888888776542 26777888888888887775544 77777888888888777743 32 66777777777
Q ss_pred cccCcCCCCCc-------------------ccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCC--
Q 039642 161 FSKNQLSGFIP-------------------HEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIP-- 219 (353)
Q Consensus 161 L~~n~~~~~~~-------------------~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-- 219 (353)
+++|.+.+... ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~ 218 (466)
T 1o6v_A 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 218 (466)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGG
T ss_pred CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccccc
Confidence 77776553210 1133445555555555555422 224445555555555555443322
Q ss_pred ------------------ccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEec
Q 039642 220 ------------------NEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQL 281 (353)
Q Consensus 220 ------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 281 (353)
..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 219 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 294 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred ccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEc
Confidence 123333444444444444432221 3444445555555554433222 444555555555
Q ss_pred cCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 282 SYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 282 ~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
++|++++..+ +..+++|++|++++|++++..| +..+++|+.|++++|++++. ..+..+++|++|++
T Consensus 295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred CCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence 5555553222 4455556666666665554433 45556666666666666543 34556666666654
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-27 Score=208.39 Aligned_cols=218 Identities=27% Similarity=0.289 Sum_probs=164.6
Q ss_pred CCCCccceeeeCCCCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCC
Q 039642 67 ISPCTWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSI 146 (353)
Q Consensus 67 ~~~c~~~~v~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 146 (353)
.+.|.|.|+.|...+.++.++++++++.. +|. .+. +++++|++++|.+.+..+..|.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 36799999999876677789999988873 554 332 57888999998888777777888888999999888888555
Q ss_pred CcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCC
Q 039642 147 PPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLK 226 (353)
Q Consensus 147 ~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 226 (353)
+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55567888888888888888866666677788888888888888766666677778888888888877765555567777
Q ss_pred CCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcc
Q 039642 227 SLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNG 288 (353)
Q Consensus 227 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 288 (353)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 77777777777775555556777777777777777765555556667777777777776653
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.2e-27 Score=224.36 Aligned_cols=251 Identities=34% Similarity=0.454 Sum_probs=178.1
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCC---------------
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGS--------------- 145 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--------------- 145 (353)
.+++.++++++.+.+.. .+.++++|++|++++|.+++..+ +.++++|++|++++|.+.+.
T Consensus 90 ~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 90 TKLVDILMNNNQIADIT---PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164 (466)
T ss_dssp TTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE
T ss_pred ccCCEEECCCCccccCh---hhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecC
Confidence 46777777777665432 25666666666666666654322 44555555555555444321
Q ss_pred ---------------------------CCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccC
Q 039642 146 ---------------------------IPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSL 198 (353)
Q Consensus 146 ---------------------------~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 198 (353)
+ ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. ..+
T Consensus 165 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l 239 (466)
T 1o6v_A 165 NQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTL 239 (466)
T ss_dssp ESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred CcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhh
Confidence 1 123344445555555554443322 44455666666666665532 346
Q ss_pred CCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCE
Q 039642 199 GNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSD 278 (353)
Q Consensus 199 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 278 (353)
..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 677888888998888876543 8889999999999999985433 7889999999999999976554 778899999
Q ss_pred EeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 279 LQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 279 L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
|++++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|++|++
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 9999999987654 67889999999999999864 468899999999999999998777 788999998875
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=4.9e-27 Score=219.08 Aligned_cols=246 Identities=20% Similarity=0.218 Sum_probs=150.0
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.++++++.+.+. .+..+++|++|++++|.+++. + +.++++|++|++++|.+++ ++ +..+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 4677888888877652 367777888888888877764 2 6777778888888877774 33 67777777777
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcc
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG 240 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 240 (353)
+++|.+.+. + +..+++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++
T Consensus 134 l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 134 CARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp CTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence 777777653 2 556666666666666443333 24555666666666666554 22 4555555555555555553
Q ss_pred ccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCcc---------------------------
Q 039642 241 SIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFS--------------------------- 293 (353)
Q Consensus 241 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~--------------------------- 293 (353)
. .++.+++|++|++++|.+++ +| +..+++|++|++++|++++..+..
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 2 24455555555555555544 33 444555555555555554332211
Q ss_pred --ccCCCCCCeeeccCCcccccCCc--------cCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 294 --LGNLTNLAILYIGINALSGSIPN--------EIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 294 --l~~~~~L~~L~ls~n~~~~~~~~--------~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
.+.+++|+.|++++|...+.+|. .+..+++|+.|++++|++++ ++ +..+++|++|++
T Consensus 280 ~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSC 346 (457)
T ss_dssp EECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEEC
T ss_pred ccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEEC
Confidence 23345666666666655544432 24556777788888888776 33 777778887764
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=2.1e-30 Score=230.47 Aligned_cols=242 Identities=23% Similarity=0.221 Sum_probs=203.3
Q ss_pred ccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCC-CCCCcCCC-------CCCCCCEEEcccCcCCCCCccc
Q 039642 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFS-GSIPPEIG-------YLTHLKLLSFSKNQLSGFIPHE 173 (353)
Q Consensus 102 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~~~~~~~~~ 173 (353)
+...++|+.+++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+.+..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 44566789999999998 667655544 899999999884 44555554 6899999999999999888887
Q ss_pred c--cCCCCCCEEEcccCcCCccCCccCCCC-----CCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccc--cCc
Q 039642 174 I--GRLSSLNGLNLYSNFLKGSIPPSLGNL-----TSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGS--IPL 244 (353)
Q Consensus 174 l--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~ 244 (353)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 8899999999999999976 7766665 8999999999999988888999999999999999998764 333
Q ss_pred cc--cCCCCCCEEEcccCcCcC--Ccc-hhccCCCCCCEEeccCCcCcccCC-ccccCCCCCCeeeccCCcccccCCccC
Q 039642 245 SL--GNLTKLGTLYLHTNALFG--SIP-YEIGNLKSLSDLQLSYNTLNGSIP-FSLGNLTNLAILYIGINALSGSIPNEI 318 (353)
Q Consensus 245 ~~--~~l~~L~~L~L~~n~l~~--~~~-~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~ls~n~~~~~~~~~~ 318 (353)
.+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 44 789999999999999963 223 344678999999999999998664 45667899999999999999 788877
Q ss_pred cCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 319 GNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 319 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
. ++|+.|++++|++++. |. +..+++|++|++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 6 8999999999999966 66 889999999986
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=5.8e-27 Score=227.60 Aligned_cols=133 Identities=23% Similarity=0.273 Sum_probs=119.5
Q ss_pred CCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcc
Q 039642 107 HLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLY 186 (353)
Q Consensus 107 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 186 (353)
++++|+|++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 79999999999998888899999999999999999997777789999999999999999997777789999999999999
Q ss_pred cCcCCccCCccCCCCCCccEEEcccCcccc-cCCccCCCCCCCCEEEcccCCCc
Q 039642 187 SNFLKGSIPPSLGNLTSLIYIDIGNNLLSG-SIPNEVGNLKSLSDLRLDNNTLS 239 (353)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~ 239 (353)
+|.+++..+..++++++|++|++++|.+++ ..|..++.+++|++|++++|.++
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 999997777779999999999999999875 35677788888888888877653
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-29 Score=238.03 Aligned_cols=235 Identities=19% Similarity=0.146 Sum_probs=185.1
Q ss_pred cCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCE
Q 039642 103 SSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNG 182 (353)
Q Consensus 103 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 182 (353)
..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+. | ..++|+.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCE
Confidence 345588889999888888777888888889999998888875544 78888899999988887733 2 2378888
Q ss_pred EEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCcccc-CCCCCCEEEcccCc
Q 039642 183 LNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLG-NLTKLGTLYLHTNA 261 (353)
Q Consensus 183 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~ 261 (353)
|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99988888765443 357888899999988887777888888899999999988877776665 68889999999988
Q ss_pred CcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCc-cccCc
Q 039642 262 LFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLS-GSIPL 340 (353)
Q Consensus 262 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~ 340 (353)
+++..+ ...+++|++|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++ +.+|.
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 865522 33578899999999988864 4457788889999999998884 6777888888999999999888 66777
Q ss_pred cccCCCCCCee
Q 039642 341 SLGNLTKLVTL 351 (353)
Q Consensus 341 ~~~~l~~L~~L 351 (353)
.+..++.|+.+
T Consensus 257 ~~~~l~~L~~l 267 (487)
T 3oja_A 257 FFSKNQRVQTV 267 (487)
T ss_dssp HHTTCHHHHHH
T ss_pred HHHhCCCCcEE
Confidence 77666655543
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.2e-26 Score=202.65 Aligned_cols=206 Identities=22% Similarity=0.221 Sum_probs=126.7
Q ss_pred CCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEc
Q 039642 106 PHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNL 185 (353)
Q Consensus 106 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 185 (353)
++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35777777777777666666777777777777777777555556777777777777777776555566667777777777
Q ss_pred ccCcCCccCCccCCCCCCccEEEcccCccccc-CCccCCCCCCCCEEEcccCCCccccCccccCCCCCC----EEEcccC
Q 039642 186 YSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGS-IPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLG----TLYLHTN 260 (353)
Q Consensus 186 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~L~~n 260 (353)
++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 77776655444566666666666666666542 455566666666666666666544444444444444 5555555
Q ss_pred cCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 261 ALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 261 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
.+++..+..+ ...+|++|++++|++++..+..+..+++|++|++++|.+++
T Consensus 188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 5543333222 22355555555555554433344555555555555555553
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=6.1e-28 Score=214.99 Aligned_cols=233 Identities=21% Similarity=0.173 Sum_probs=196.8
Q ss_pred CCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcc
Q 039642 107 HLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLY 186 (353)
Q Consensus 107 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 186 (353)
.++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666655555556678899999999999997777789999999999999999986543 8899999999999
Q ss_pred cCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCc
Q 039642 187 SNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSI 266 (353)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 266 (353)
+|.+++. + ..++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9998743 2 348999999999999876544 3678999999999999877778899999999999999998877
Q ss_pred chhc-cCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCC
Q 039642 267 PYEI-GNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNL 345 (353)
Q Consensus 267 ~~~l-~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l 345 (353)
+..+ ..+++|++|++++|.+++. + ....+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 7666 4789999999999999865 3 23458999999999999995 5556889999999999999999 688889999
Q ss_pred CCCCeeeC
Q 039642 346 TKLVTLYL 353 (353)
Q Consensus 346 ~~L~~L~l 353 (353)
++|++|++
T Consensus 237 ~~L~~L~l 244 (317)
T 3o53_A 237 QNLEHFDL 244 (317)
T ss_dssp TTCCEEEC
T ss_pred CCCCEEEc
Confidence 99999986
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.9e-25 Score=194.32 Aligned_cols=204 Identities=24% Similarity=0.230 Sum_probs=153.3
Q ss_pred CCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcc
Q 039642 107 HLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLY 186 (353)
Q Consensus 107 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 186 (353)
..+.++++++.++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 56788888888774 454443 578888888888886555678888888888888888875555556778888888888
Q ss_pred cCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCc
Q 039642 187 SNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSI 266 (353)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 266 (353)
+|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88887665566777888888888888887766666778888888888888877555555777788888888888876666
Q ss_pred chhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCccccc
Q 039642 267 PYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGS 313 (353)
Q Consensus 267 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~ 313 (353)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 66677778888888888887755555667777888888888877643
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=2.9e-26 Score=199.63 Aligned_cols=211 Identities=24% Similarity=0.268 Sum_probs=144.3
Q ss_pred cccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCC
Q 039642 101 SFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSL 180 (353)
Q Consensus 101 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 180 (353)
....+++|+.|+++++.+... ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 345667777788877776532 236667777777777777764 2 356677777777777777776555566777777
Q ss_pred CEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccC
Q 039642 181 NGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTN 260 (353)
Q Consensus 181 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 260 (353)
++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 77777777777655555677777777777777777655555667777777777777777555555666777777777777
Q ss_pred cCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCC
Q 039642 261 ALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLK 322 (353)
Q Consensus 261 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~ 322 (353)
.+++..+..+..+++|++|++++|.+.+. +++|+.++++.|.++|.+|.+++.++
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 77666666666677777777777765532 44667777777777777776665544
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1e-27 Score=225.52 Aligned_cols=235 Identities=20% Similarity=0.182 Sum_probs=204.3
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.++++++.+.+..+. .|..+++|++|++++|.+++..+ +..+++|++|++++|.+++. | ..++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 3799999999999876555 89999999999999999987665 88999999999999999843 3 238999999
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCC-CCCCCCEEEcccCCCc
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVG-NLKSLSDLRLDNNTLS 239 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~~~ 239 (353)
+++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999999865443 458999999999999988888899999999999999999988787775 7999999999999998
Q ss_pred cccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCccc-ccCCccC
Q 039642 240 GSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALS-GSIPNEI 318 (353)
Q Consensus 240 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~-~~~~~~~ 318 (353)
+. + ....+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 65 3 34468999999999999976544 58889999999999999995 6777889999999999999998 6677778
Q ss_pred cCCCCCCEEeCc
Q 039642 319 GNLKSLLDLRLD 330 (353)
Q Consensus 319 ~~~~~L~~L~l~ 330 (353)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 888888888886
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1e-25 Score=196.69 Aligned_cols=226 Identities=24% Similarity=0.252 Sum_probs=191.7
Q ss_pred EEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCc
Q 039642 110 YLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNF 189 (353)
Q Consensus 110 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 189 (353)
.++..+..+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3445555544 3455443 579999999999997666689999999999999999997777789999999999999999
Q ss_pred CCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcc-ccCccccCCCCCCEEEcccCcCcCCcch
Q 039642 190 LKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG-SIPLSLGNLTKLGTLYLHTNALFGSIPY 268 (353)
Q Consensus 190 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 268 (353)
+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 998888889999999999999999997777679999999999999999986 3688999999999999999999877776
Q ss_pred hccCCCCCC----EEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccC
Q 039642 269 EIGNLKSLS----DLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIP 339 (353)
Q Consensus 269 ~l~~~~~L~----~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 339 (353)
.+..+++|+ +|++++|.+++..+..+ ...+|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 776666666 89999999996555444 44589999999999997766677899999999999999996554
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=5.7e-26 Score=197.80 Aligned_cols=226 Identities=23% Similarity=0.209 Sum_probs=173.0
Q ss_pred CCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEccc
Q 039642 108 LGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYS 187 (353)
Q Consensus 108 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 187 (353)
+..+++.++.+.+.. .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCC
Confidence 334455555554332 2346778888888888876 333 47778888888888888874 2 3677888888888888
Q ss_pred CcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcc
Q 039642 188 NFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIP 267 (353)
Q Consensus 188 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 267 (353)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 88887666667888888888888888887666667888888888888888886666667788888888888888877766
Q ss_pred hhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCC
Q 039642 268 YEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLT 346 (353)
Q Consensus 268 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~ 346 (353)
..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|+.++++.|.++|.+|..++.++
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 667788888888888888887666667888888888888887763 356788888888888888888777654
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=5.6e-25 Score=205.00 Aligned_cols=214 Identities=31% Similarity=0.451 Sum_probs=104.8
Q ss_pred CCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCC------
Q 039642 106 PHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSS------ 179 (353)
Q Consensus 106 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~------ 179 (353)
++|++|++++|.+++ +| .+.++++|++|++++|.+++ +|..+ ++|++|++++|.+.+ +| .+..+++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 345555555555543 33 24555555555555554442 33221 244444444444442 22 2444444
Q ss_pred --------------CCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCcc
Q 039642 180 --------------LNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLS 245 (353)
Q Consensus 180 --------------L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 245 (353)
|++|++++|.+. .+| .+..+++|++|++++|.+++ +|.. .++|+.|++++|.+++ +|..
T Consensus 203 ~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~ 275 (454)
T 1jl5_A 203 DNNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL 275 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC
T ss_pred CCCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc
Confidence 444444444444 333 24455555555555555543 2221 2344444444444432 2221
Q ss_pred ccCCCCCCEEEcccCcCcC--Ccchhc-------------cCC-CCCCEEeccCCcCcccCCccccCCCCCCeeeccCCc
Q 039642 246 LGNLTKLGTLYLHTNALFG--SIPYEI-------------GNL-KSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINA 309 (353)
Q Consensus 246 ~~~l~~L~~L~L~~n~l~~--~~~~~l-------------~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~ 309 (353)
.++|++|++++|.+++ ..|..+ ... ++|++|++++|++++ +|.. +++|++|++++|+
T Consensus 276 ---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 276 ---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNH 348 (454)
T ss_dssp ---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred ---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCc
Confidence 2344555555554433 111111 111 356666666666663 3332 4667777777777
Q ss_pred ccccCCccCcCCCCCCEEeCcCCcCcc--ccCccccCC
Q 039642 310 LSGSIPNEIGNLKSLLDLRLDNNTLSG--SIPLSLGNL 345 (353)
Q Consensus 310 ~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l 345 (353)
++ .+|. .+++|+.|++++|++++ .+|..+..+
T Consensus 349 l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 349 LA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred cc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 76 4554 35777778888887777 677766665
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.2e-25 Score=216.17 Aligned_cols=250 Identities=27% Similarity=0.316 Sum_probs=150.9
Q ss_pred CCCCCccceeeeC------C-CCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCC
Q 039642 66 KISPCTWFGIHCN------H-AGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLS 138 (353)
Q Consensus 66 ~~~~c~~~~v~c~------~-~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 138 (353)
+.++|.|.+..+. + ...++.++++++++. .+|. .+. ++|+.|++++|.++. +|. .+++|++|+++
T Consensus 18 ~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls 89 (622)
T 3g06_A 18 AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVS 89 (622)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred cCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcC
Confidence 4456777553211 1 124677788877776 5554 333 677777777777763 343 45677777777
Q ss_pred CCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccC
Q 039642 139 FNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSI 218 (353)
Q Consensus 139 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 218 (353)
+|.++ .+|. .+++|++|++++|.+.+ +|. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++ +
T Consensus 90 ~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l 156 (622)
T 3g06_A 90 GNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-L 156 (622)
T ss_dssp SCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-C
T ss_pred CCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-c
Confidence 77776 4454 55677777777777663 333 34566666666666653 3332 2556666666665553 2
Q ss_pred CccC-----------------CCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEec
Q 039642 219 PNEV-----------------GNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQL 281 (353)
Q Consensus 219 ~~~~-----------------~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 281 (353)
|..+ ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|. .+++|++|++
T Consensus 157 ~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~L 228 (622)
T 3g06_A 157 PALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIV 228 (622)
T ss_dssp CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEEC
T ss_pred CCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEc
Confidence 2211 123566666666666653 3322 345566666666553 2332 2356777777
Q ss_pred cCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 282 SYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 282 ~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+.++++|++|+|
T Consensus 229 s~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 229 SGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred cCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 7777774 44 34567777777777777 4554 4577778888888777 67777777777777765
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=4.5e-25 Score=193.76 Aligned_cols=205 Identities=24% Similarity=0.220 Sum_probs=157.4
Q ss_pred cccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCC
Q 039642 101 SFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSL 180 (353)
Q Consensus 101 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 180 (353)
.+.+++++++++++++.++. +|..+. +++++|++++|.+++..+..+..+++|++|++++|.+.+. +. ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 46678888888888888874 444443 5788888888888866677788888888888888888743 32 2677888
Q ss_pred CEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccC
Q 039642 181 NGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTN 260 (353)
Q Consensus 181 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 260 (353)
++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888888887 56777778888888888888888666677888888888888888887655566777888888888888
Q ss_pred cCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 261 ALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 261 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
.+++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 886655556677788888888888887 566667777788888888887754
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=9.8e-26 Score=210.12 Aligned_cols=243 Identities=27% Similarity=0.290 Sum_probs=121.9
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCC-------------cEEeCCCCcCCCCCC
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSML-------------KFLGLSFNQFSGSIP 147 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-------------~~L~l~~n~l~~~~~ 147 (353)
.++++++++++.+ |.+|. .++++++|++|++++|.+.+.+|..++++.+| ++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 3667777777777 67776 67777777777777777777777666665543 666666666553 33
Q ss_pred cCCCCCCCCCEEEcccCcCCCCCcccc----------------cCC-CCCCEEEcccCcCCccCCccCCCCCCccEEEcc
Q 039642 148 PEIGYLTHLKLLSFSKNQLSGFIPHEI----------------GRL-SSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIG 210 (353)
Q Consensus 148 ~~l~~l~~L~~L~L~~n~~~~~~~~~l----------------~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 210 (353)
.. .++|++|++++|.+.+ +|..+ ... ++|++|++++|.+++ +| .+..+++|++|+++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 21 2445555555555543 33211 011 355555555555553 44 35555666666666
Q ss_pred cCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccC
Q 039642 211 NNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSI 290 (353)
Q Consensus 211 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 290 (353)
+|.+++ +|.. .++|++|++++|.+++ +| .++.+++|++|++++|.+++ +|.. .++|++|++++|.++ .+
T Consensus 162 ~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 162 NNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-EL 230 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SC
T ss_pred CCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cc
Confidence 665553 3332 2356666666666553 34 45666666666666666643 3321 136666666666666 44
Q ss_pred CccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeee
Q 039642 291 PFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLY 352 (353)
Q Consensus 291 ~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 352 (353)
|. ++.+++|++|++++|++++ +|.. .++|+.|++++|++++ +|.. .++|++|+
T Consensus 231 p~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 283 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLD 283 (454)
T ss_dssp CC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred cc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEE
Confidence 53 5666677777777776663 3432 3566667777666664 4432 24555554
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=3.5e-28 Score=218.27 Aligned_cols=264 Identities=16% Similarity=0.157 Sum_probs=212.6
Q ss_pred ccceeeeCCCCCEEEEEeCCCCcceecCcccccCC--CCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCC-CC
Q 039642 71 TWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSF--PHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGS-IP 147 (353)
Q Consensus 71 ~~~~v~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~ 147 (353)
+|.++.++ ...++.++++++.+.+. .+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++
T Consensus 38 ~W~~~~~~-~~~~~~l~l~~~~~~~~----~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 38 RWYRLASD-ESLWQTLDLTGKNLHPD----VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp HHHHHHTC-STTSSEEECTTCBCCHH----HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH
T ss_pred HHHHHhcC-chhheeeccccccCCHH----HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH
Confidence 67777765 34577899998877632 45566 8999999999999887665 56799999999999998755 77
Q ss_pred cCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccC-cCCcc-CCccCCCCCCccEEEcccC-ccccc-CCccCC
Q 039642 148 PEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSN-FLKGS-IPPSLGNLTSLIYIDIGNN-LLSGS-IPNEVG 223 (353)
Q Consensus 148 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~ 223 (353)
..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+.
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 77889999999999999988777888899999999999999 67652 5666778999999999999 88754 566678
Q ss_pred CCC-CCCEEEcccC--CCc-cccCccccCCCCCCEEEcccCc-CcCCcchhccCCCCCCEEeccCCc-CcccCCccccCC
Q 039642 224 NLK-SLSDLRLDNN--TLS-GSIPLSLGNLTKLGTLYLHTNA-LFGSIPYEIGNLKSLSDLQLSYNT-LNGSIPFSLGNL 297 (353)
Q Consensus 224 ~~~-~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~ 297 (353)
.++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 889 9999999999 455 4566677889999999999999 777777788899999999999995 443333357889
Q ss_pred CCCCeeeccCCcccccCCccCcCC-CCCCEEeCcCCcCccccCccccC
Q 039642 298 TNLAILYIGINALSGSIPNEIGNL-KSLLDLRLDNNTLSGSIPLSLGN 344 (353)
Q Consensus 298 ~~L~~L~ls~n~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~ 344 (353)
++|++|++++| ++.. .+..+ .+++.|++++|++++..|..+..
T Consensus 272 ~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 272 PTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 99999999999 4432 22233 34677779999999999887664
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=8.2e-29 Score=231.91 Aligned_cols=271 Identities=20% Similarity=0.143 Sum_probs=169.1
Q ss_pred CEEEEEeCCCCcce----ecCcccccCCCCCCEEECCCCCCcccCCcc-----CCCCCCCcEEeCCCCcCCCC----CCc
Q 039642 82 RVNSINLTSAGLKG----TLHDFSFSSFPHLGYLDLRINQFFGIIPPQ-----IGNLSMLKFLGLSFNQFSGS----IPP 148 (353)
Q Consensus 82 ~v~~l~l~~~~l~~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-----l~~l~~L~~L~l~~n~l~~~----~~~ 148 (353)
+++.+++++|.+.+ .++. .+..+++|++|++++|.+++..+.. ....++|++|++++|.+++. ++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 57888888888763 3444 6778888888888888776432222 22355688888888877643 234
Q ss_pred CCCCCCCCCEEEcccCcCCCCCccccc-----CCCCCCEEEcccCcCCcc----CCccCCCCCCccEEEcccCcccccC-
Q 039642 149 EIGYLTHLKLLSFSKNQLSGFIPHEIG-----RLSSLNGLNLYSNFLKGS----IPPSLGNLTSLIYIDIGNNLLSGSI- 218 (353)
Q Consensus 149 ~l~~l~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~- 218 (353)
.+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 455567788888887776543332222 245777777777777642 3455556677777777777765431
Q ss_pred ----CccCCCCCCCCEEEcccCCCccc----cCccccCCCCCCEEEcccCcCcCCcchhcc-----CCCCCCEEeccCCc
Q 039642 219 ----PNEVGNLKSLSDLRLDNNTLSGS----IPLSLGNLTKLGTLYLHTNALFGSIPYEIG-----NLKSLSDLQLSYNT 285 (353)
Q Consensus 219 ----~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~ 285 (353)
+.....+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 12223467777777777777643 455555667777777777776544333222 12567777777777
Q ss_pred Cccc----CCccccCCCCCCeeeccCCcccccCCccCcC-----CCCCCEEeCcCCcCcc----ccCccccCCCCCCeee
Q 039642 286 LNGS----IPFSLGNLTNLAILYIGINALSGSIPNEIGN-----LKSLLDLRLDNNTLSG----SIPLSLGNLTKLVTLY 352 (353)
Q Consensus 286 l~~~----~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ 352 (353)
+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|++++ .+|..+..+++|++|+
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 6643 3344455667777777777766543333321 5567777777777765 5666666667777666
Q ss_pred C
Q 039642 353 L 353 (353)
Q Consensus 353 l 353 (353)
+
T Consensus 405 l 405 (461)
T 1z7x_W 405 L 405 (461)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.6e-24 Score=188.89 Aligned_cols=202 Identities=24% Similarity=0.194 Sum_probs=171.1
Q ss_pred CCCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCE
Q 039642 79 HAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKL 158 (353)
Q Consensus 79 ~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 158 (353)
...+++.++++++++. .+|. .+ .++++.|++++|.+++..+..+..+++|++|++++|.+++. +.. ..+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCE
T ss_pred ccCCccEEECCCCCCC-cCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCE
Confidence 3457888999998887 4554 33 26899999999999888888899999999999999998843 333 78899999
Q ss_pred EEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCC
Q 039642 159 LSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTL 238 (353)
Q Consensus 159 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 238 (353)
|++++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 999999998 6777888899999999999999977777889999999999999999977777788999999999999999
Q ss_pred ccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcc
Q 039642 239 SGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNG 288 (353)
Q Consensus 239 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 288 (353)
++..+..+..+++|++|++++|.++ .+|..+...++|+.|++++|.+..
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 8655556788999999999999995 677777788899999999998763
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=2.3e-25 Score=197.77 Aligned_cols=225 Identities=19% Similarity=0.163 Sum_probs=172.0
Q ss_pred CCCCEEECCCCCCcccCCc---cCCCCCCCcEEeCCCCcCCCCCCcCC--CCCCCCCEEEcccCcCCCCCc----ccccC
Q 039642 106 PHLGYLDLRINQFFGIIPP---QIGNLSMLKFLGLSFNQFSGSIPPEI--GYLTHLKLLSFSKNQLSGFIP----HEIGR 176 (353)
Q Consensus 106 ~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~L~~n~~~~~~~----~~l~~ 176 (353)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3567788887766532110 11234669999999999888888877 888999999999998886544 33456
Q ss_pred CCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCccccc--C--CccCCCCCCCCEEEcccCCCccccCc----cccC
Q 039642 177 LSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGS--I--PNEVGNLKSLSDLRLDNNTLSGSIPL----SLGN 248 (353)
Q Consensus 177 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~ 248 (353)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. + +..+..+++|++|++++|.++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 88999999999999877778888899999999999987642 2 2234678899999999998862 222 2467
Q ss_pred CCCCCEEEcccCcCcCCcchhccCC---CCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCC
Q 039642 249 LTKLGTLYLHTNALFGSIPYEIGNL---KSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLL 325 (353)
Q Consensus 249 l~~L~~L~L~~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~ 325 (353)
+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 7899999999999987777666665 68999999999998 6676654 7899999999999853 43 57788999
Q ss_pred EEeCcCCcCcc
Q 039642 326 DLRLDNNTLSG 336 (353)
Q Consensus 326 ~L~l~~n~l~~ 336 (353)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999998874
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=2.8e-27 Score=216.54 Aligned_cols=239 Identities=18% Similarity=0.163 Sum_probs=191.2
Q ss_pred cccCCCCCCEEECCCCCCccc----CCccCCCCCCCcEEeCCCCcC---CCCCCcCC-------CCCCCCCEEEcccCcC
Q 039642 101 SFSSFPHLGYLDLRINQFFGI----IPPQIGNLSMLKFLGLSFNQF---SGSIPPEI-------GYLTHLKLLSFSKNQL 166 (353)
Q Consensus 101 ~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l---~~~~~~~l-------~~l~~L~~L~L~~n~~ 166 (353)
.+..+++|++|++++|.+++. ++..+..+++|++|++++|.+ ++.+|..+ ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 567888999999999988765 334577899999999998644 44445444 6889999999999999
Q ss_pred CC----CCcccccCCCCCCEEEcccCcCCccCCccC----CCC---------CCccEEEcccCccc-ccCC---ccCCCC
Q 039642 167 SG----FIPHEIGRLSSLNGLNLYSNFLKGSIPPSL----GNL---------TSLIYIDIGNNLLS-GSIP---NEVGNL 225 (353)
Q Consensus 167 ~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l----~~l---------~~L~~L~l~~n~l~-~~~~---~~~~~~ 225 (353)
.. .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|.++ +.++ ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 86 366778889999999999999864433333 333 89999999999987 3344 356678
Q ss_pred CCCCEEEcccCCCcc-----ccCccccCCCCCCEEEcccCcCc----CCcchhccCCCCCCEEeccCCcCccc----CCc
Q 039642 226 KSLSDLRLDNNTLSG-----SIPLSLGNLTKLGTLYLHTNALF----GSIPYEIGNLKSLSDLQLSYNTLNGS----IPF 292 (353)
Q Consensus 226 ~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~ 292 (353)
++|++|++++|.++. ..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 899999999999873 23447788999999999999986 56778888999999999999999865 445
Q ss_pred cc--cCCCCCCeeeccCCcccc----cCCccC-cCCCCCCEEeCcCCcCccccC
Q 039642 293 SL--GNLTNLAILYIGINALSG----SIPNEI-GNLKSLLDLRLDNNTLSGSIP 339 (353)
Q Consensus 293 ~l--~~~~~L~~L~ls~n~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~p 339 (353)
.+ +.+++|++|++++|.+++ .+|..+ .++++|+.|++++|++++..+
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 55 348999999999999997 477777 568999999999999997764
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=7.2e-28 Score=225.49 Aligned_cols=273 Identities=19% Similarity=0.184 Sum_probs=203.4
Q ss_pred CCEEEEEeCCCCcceecCcccccCCC----CCCEEECCCCCCcc----cCCccCCCCCCCcEEeCCCCcCCCCCCcC---
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFP----HLGYLDLRINQFFG----IIPPQIGNLSMLKFLGLSFNQFSGSIPPE--- 149 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~----~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--- 149 (353)
.+++.++++++.+.+.........++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 57889999999887643321233444 69999999998874 45778888999999999999876432222
Q ss_pred --CCCCCCCCEEEcccCcCCCC----CcccccCCCCCCEEEcccCcCCccCCccCC-----CCCCccEEEcccCccccc-
Q 039642 150 --IGYLTHLKLLSFSKNQLSGF----IPHEIGRLSSLNGLNLYSNFLKGSIPPSLG-----NLTSLIYIDIGNNLLSGS- 217 (353)
Q Consensus 150 --l~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~- 217 (353)
....++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 22356799999999988753 345566778999999999987654333332 356899999999988763
Q ss_pred ---CCccCCCCCCCCEEEcccCCCcccc-----CccccCCCCCCEEEcccCcCcCC----cchhccCCCCCCEEeccCCc
Q 039642 218 ---IPNEVGNLKSLSDLRLDNNTLSGSI-----PLSLGNLTKLGTLYLHTNALFGS----IPYEIGNLKSLSDLQLSYNT 285 (353)
Q Consensus 218 ---~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~ 285 (353)
++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 4566777899999999999887532 22334578999999999998654 56677778999999999999
Q ss_pred CcccCCcccc-----CCCCCCeeeccCCccccc----CCccCcCCCCCCEEeCcCCcCccccCccccC-----CCCCCee
Q 039642 286 LNGSIPFSLG-----NLTNLAILYIGINALSGS----IPNEIGNLKSLLDLRLDNNTLSGSIPLSLGN-----LTKLVTL 351 (353)
Q Consensus 286 l~~~~~~~l~-----~~~~L~~L~ls~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L 351 (353)
+++..+..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|++++..+..+.. .++|++|
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 8754333332 236999999999999865 4566777899999999999998766655442 6789988
Q ss_pred eC
Q 039642 352 YL 353 (353)
Q Consensus 352 ~l 353 (353)
++
T Consensus 376 ~L 377 (461)
T 1z7x_W 376 WL 377 (461)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.8e-23 Score=200.92 Aligned_cols=229 Identities=26% Similarity=0.294 Sum_probs=158.0
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.+++++|.+. .++. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+
T Consensus 61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEE
Confidence 35667777777665 3333 45666666666666653 333 45566666666666552 333 334455555
Q ss_pred cccCcCCCCCcccc-----------------cCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCC
Q 039642 161 FSKNQLSGFIPHEI-----------------GRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVG 223 (353)
Q Consensus 161 L~~n~~~~~~~~~l-----------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 223 (353)
+++|.+.. +|..+ ...++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.
T Consensus 128 L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~--- 198 (622)
T 3g06_A 128 IFGNQLTS-LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT--- 198 (622)
T ss_dssp CCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---
T ss_pred CCCCCCCc-CCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---
Confidence 55555442 22211 012344444444444442 22 234789999999999885 443
Q ss_pred CCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCee
Q 039642 224 NLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAIL 303 (353)
Q Consensus 224 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 303 (353)
..++|+.|++++|.++ .+|. .+++|++|++++|.+++ +| ..+++|++|++++|.++ .+|. .+++|+.|
T Consensus 199 ~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L 266 (622)
T 3g06_A 199 LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSL 266 (622)
T ss_dssp CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEE
Confidence 3478999999999998 4553 35889999999999965 55 45689999999999999 5565 57899999
Q ss_pred eccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccC
Q 039642 304 YIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGN 344 (353)
Q Consensus 304 ~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 344 (353)
++++|+++ .+|..+.++++|+.|+|++|++++..|..+..
T Consensus 267 ~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp ECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred eCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 99999999 78989999999999999999999888876553
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=1.4e-26 Score=210.06 Aligned_cols=251 Identities=19% Similarity=0.217 Sum_probs=185.2
Q ss_pred EEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCC----ccCCCCC-CCcEEeCCCCcCCCCCCcCCCCC-----CC
Q 039642 86 INLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIP----PQIGNLS-MLKFLGLSFNQFSGSIPPEIGYL-----TH 155 (353)
Q Consensus 86 l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~~ 155 (353)
..++.+.+.|.++. .+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46777888877766 55566669999999999887766 6677788 89999999998886656555553 88
Q ss_pred CCEEEcccCcCCCCCccc----ccCC-CCCCEEEcccCcCCccCCccC----CC-CCCccEEEcccCcccccC----Ccc
Q 039642 156 LKLLSFSKNQLSGFIPHE----IGRL-SSLNGLNLYSNFLKGSIPPSL----GN-LTSLIYIDIGNNLLSGSI----PNE 221 (353)
Q Consensus 156 L~~L~L~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~----~~~ 221 (353)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999988665553 3444 789999999999876554433 33 368999999999888533 333
Q ss_pred CCCCC-CCCEEEcccCCCccccCcc----ccCC-CCCCEEEcccCcCcCC----cchhccC-CCCCCEEeccCCcCcccC
Q 039642 222 VGNLK-SLSDLRLDNNTLSGSIPLS----LGNL-TKLGTLYLHTNALFGS----IPYEIGN-LKSLSDLQLSYNTLNGSI 290 (353)
Q Consensus 222 ~~~~~-~L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~~~~l~~-~~~L~~L~l~~n~l~~~~ 290 (353)
+...+ +|++|++++|.+++..+.. +... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44554 8999999999987655433 3344 5899999999998663 4444544 458999999999988644
Q ss_pred C----ccccCCCCCCeeeccCCcccc-------cCCccCcCCCCCCEEeCcCCcCccc
Q 039642 291 P----FSLGNLTNLAILYIGINALSG-------SIPNEIGNLKSLLDLRLDNNTLSGS 337 (353)
Q Consensus 291 ~----~~l~~~~~L~~L~ls~n~~~~-------~~~~~~~~~~~L~~L~l~~n~l~~~ 337 (353)
+ ..+..+++|+.|++++|.+.+ .++..+..+++|+.||+++|++.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 345677889999999998443 2344567888899999999988765
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=8e-24 Score=180.66 Aligned_cols=196 Identities=19% Similarity=0.191 Sum_probs=135.0
Q ss_pred CCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCc-CCCCCcccccCCCCCCEEEccc-CcCCccCCccCCCCCCccEEE
Q 039642 131 MLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQ-LSGFIPHEIGRLSSLNGLNLYS-NFLKGSIPPSLGNLTSLIYID 208 (353)
Q Consensus 131 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~ 208 (353)
+|++|++++|.+++..+..|.++++|++|++++|. +....+..|..+++|++|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888888888875555577788888888888886 6655555677788888888887 777765556677777888888
Q ss_pred cccCcccccCCccCCCCCCCC---EEEcccC-CCccccCccccCCCCCC-EEEcccCcCcCCcchhccCCCCCCEEeccC
Q 039642 209 IGNNLLSGSIPNEVGNLKSLS---DLRLDNN-TLSGSIPLSLGNLTKLG-TLYLHTNALFGSIPYEIGNLKSLSDLQLSY 283 (353)
Q Consensus 209 l~~n~l~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 283 (353)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++ .+|......++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 88877775 554 66677776 7777777 67655455567777777 7777777775 3443322336677777777
Q ss_pred Cc-CcccCCccccCC-CCCCeeeccCCcccccCCccCcCCCCCCEEeCcCC
Q 039642 284 NT-LNGSIPFSLGNL-TNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNN 332 (353)
Q Consensus 284 n~-l~~~~~~~l~~~-~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n 332 (353)
|+ +++..+..+..+ ++|++|++++|+++ .+|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 74 665445556666 77777777777776 33433 4566777777665
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=3.2e-23 Score=178.21 Aligned_cols=181 Identities=25% Similarity=0.208 Sum_probs=153.7
Q ss_pred CCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEc
Q 039642 130 SMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDI 209 (353)
Q Consensus 130 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 209 (353)
...++++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35678999999888 6776654 68999999999998877778889999999999999998877777888999999999
Q ss_pred ccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCccc
Q 039642 210 GNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGS 289 (353)
Q Consensus 210 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 289 (353)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999877777788899999999999999866666678889999999999998777666788888999999999999876
Q ss_pred CCccccCCCCCCeeeccCCccccc
Q 039642 290 IPFSLGNLTNLAILYIGINALSGS 313 (353)
Q Consensus 290 ~~~~l~~~~~L~~L~ls~n~~~~~ 313 (353)
.+..+..+++|+.|++++|.+.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 666788888999999999988765
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=8.8e-24 Score=180.40 Aligned_cols=196 Identities=21% Similarity=0.207 Sum_probs=151.0
Q ss_pred CCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCc-CCCCCCcCCCCCCCCCEEEccc-CcCCCCCcccccCCCCCCEEE
Q 039642 107 HLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQ-FSGSIPPEIGYLTHLKLLSFSK-NQLSGFIPHEIGRLSSLNGLN 184 (353)
Q Consensus 107 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~ 184 (353)
++++|++++|.+++..+..+.++++|++|++++|. ++...+..|.++++|++|++++ |.+.+..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888888888887777778888888888888886 7755555778888888888888 888766666778888888888
Q ss_pred cccCcCCccCCccCCCCCCcc---EEEcccC-cccccCCccCCCCCCCC-EEEcccCCCccccCccccCCCCCCEEEccc
Q 039642 185 LYSNFLKGSIPPSLGNLTSLI---YIDIGNN-LLSGSIPNEVGNLKSLS-DLRLDNNTLSGSIPLSLGNLTKLGTLYLHT 259 (353)
Q Consensus 185 l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 259 (353)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++ .+|......++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 88888875 555 77777777 8888888 78766666688888888 8888888887 4444333337888888888
Q ss_pred Cc-CcCCcchhccCC-CCCCEEeccCCcCcccCCccccCCCCCCeeeccCC
Q 039642 260 NA-LFGSIPYEIGNL-KSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGIN 308 (353)
Q Consensus 260 n~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n 308 (353)
|. +++..+..+..+ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 84 765556677777 888888888888874 4433 5678888888766
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=7e-23 Score=176.12 Aligned_cols=180 Identities=25% Similarity=0.222 Sum_probs=160.9
Q ss_pred CCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcc
Q 039642 107 HLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLY 186 (353)
Q Consensus 107 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 186 (353)
..++++++++.++. +|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45789999998874 555554 689999999999998888889999999999999999998888889999999999999
Q ss_pred cCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCc
Q 039642 187 SNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSI 266 (353)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 266 (353)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99999777778899999999999999999777777899999999999999999766668999999999999999998887
Q ss_pred chhccCCCCCCEEeccCCcCccc
Q 039642 267 PYEIGNLKSLSDLQLSYNTLNGS 289 (353)
Q Consensus 267 ~~~l~~~~~L~~L~l~~n~l~~~ 289 (353)
+..+..+++|++|++++|.+...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 77888999999999999999865
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=2.7e-23 Score=184.06 Aligned_cols=196 Identities=25% Similarity=0.328 Sum_probs=161.2
Q ss_pred cccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCC
Q 039642 101 SFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSL 180 (353)
Q Consensus 101 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 180 (353)
....+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+ ++ .+..+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L 109 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSI 109 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCC
Confidence 34567899999999998875 34 57889999999999999984 444 8899999999999999874 33 68889999
Q ss_pred CEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccC
Q 039642 181 NGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTN 260 (353)
Q Consensus 181 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 260 (353)
++|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCC
Confidence 9999999998853 3 37889999999999999885433 7888999999999999885 333 788899999999999
Q ss_pred cCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 261 ALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 261 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
.+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 9865543 778889999999999998544 37888999999999999875
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=5.2e-24 Score=188.97 Aligned_cols=226 Identities=20% Similarity=0.199 Sum_probs=183.1
Q ss_pred CCEEEEEeCCCCcceecCc--ccccCCCCCCEEECCCCCCcccCCccC--CCCCCCcEEeCCCCcCCCCCC----cCCCC
Q 039642 81 GRVNSINLTSAGLKGTLHD--FSFSSFPHLGYLDLRINQFFGIIPPQI--GNLSMLKFLGLSFNQFSGSIP----PEIGY 152 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~~ 152 (353)
.+++.+.+.+..+...... ..+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3567788887776532110 012345679999999999999999888 899999999999999986544 33457
Q ss_pred CCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCcc--C--CccCCCCCCccEEEcccCcccccCCc----cCCC
Q 039642 153 LTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGS--I--PPSLGNLTSLIYIDIGNNLLSGSIPN----EVGN 224 (353)
Q Consensus 153 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~ 224 (353)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. + +..+..+++|++|++++|.++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 89999999999999988888999999999999999997642 2 2334688999999999999973 222 2467
Q ss_pred CCCCCEEEcccCCCccccCccccCC---CCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCC
Q 039642 225 LKSLSDLRLDNNTLSGSIPLSLGNL---TKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLA 301 (353)
Q Consensus 225 ~~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 301 (353)
+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8999999999999998778777776 69999999999997 6676654 7999999999999953 43 67889999
Q ss_pred eeeccCCcccc
Q 039642 302 ILYIGINALSG 312 (353)
Q Consensus 302 ~L~ls~n~~~~ 312 (353)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999874
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=6e-26 Score=207.71 Aligned_cols=232 Identities=20% Similarity=0.194 Sum_probs=188.6
Q ss_pred CCccCCCCCCCcEEeCCCCcCCCC----CCcCCCCCCCCCEEEcccCcCC---CCCcccc-------cCCCCCCEEEccc
Q 039642 122 IPPQIGNLSMLKFLGLSFNQFSGS----IPPEIGYLTHLKLLSFSKNQLS---GFIPHEI-------GRLSSLNGLNLYS 187 (353)
Q Consensus 122 ~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~---~~~~~~l-------~~l~~L~~L~l~~ 187 (353)
++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 556677889999999999998854 3345788999999999997543 4555554 6889999999999
Q ss_pred CcCCc----cCCccCCCCCCccEEEcccCcccccCCccC----CCC---------CCCCEEEcccCCCc-cccC---ccc
Q 039642 188 NFLKG----SIPPSLGNLTSLIYIDIGNNLLSGSIPNEV----GNL---------KSLSDLRLDNNTLS-GSIP---LSL 246 (353)
Q Consensus 188 n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~----~~~---------~~L~~L~l~~n~~~-~~~~---~~~ 246 (353)
|.+++ .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|.++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99986 466678889999999999999875433333 333 89999999999997 3444 466
Q ss_pred cCCCCCCEEEcccCcCcC-----CcchhccCCCCCCEEeccCCcCc----ccCCccccCCCCCCeeeccCCccccc----
Q 039642 247 GNLTKLGTLYLHTNALFG-----SIPYEIGNLKSLSDLQLSYNTLN----GSIPFSLGNLTNLAILYIGINALSGS---- 313 (353)
Q Consensus 247 ~~l~~L~~L~L~~n~l~~-----~~~~~l~~~~~L~~L~l~~n~l~----~~~~~~l~~~~~L~~L~ls~n~~~~~---- 313 (353)
..+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..++..+..+++|++|++++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 778999999999999863 23437788999999999999996 46677888999999999999999875
Q ss_pred CCccC--cCCCCCCEEeCcCCcCcc----ccCccc-cCCCCCCeeeC
Q 039642 314 IPNEI--GNLKSLLDLRLDNNTLSG----SIPLSL-GNLTKLVTLYL 353 (353)
Q Consensus 314 ~~~~~--~~~~~L~~L~l~~n~l~~----~~p~~~-~~l~~L~~L~l 353 (353)
++..+ +.+++|+.|+|++|++++ .+|..+ .++++|++|++
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 55666 348999999999999997 588877 66899999985
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.6e-25 Score=199.51 Aligned_cols=238 Identities=16% Similarity=0.152 Sum_probs=193.8
Q ss_pred CCCEEECCCCCCcccCCccCCCC--CCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCC-CcccccCCCCCCEE
Q 039642 107 HLGYLDLRINQFFGIIPPQIGNL--SMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGF-IPHEIGRLSSLNGL 183 (353)
Q Consensus 107 ~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L 183 (353)
.++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4889999998876 3445555 7899999999999866555 56899999999999998755 77788999999999
Q ss_pred EcccCcCCccCCccCCCCCCccEEEcccC-cccc-cCCccCCCCCCCCEEEcccC-CCccc-cCccccCCC-CCCEEEcc
Q 039642 184 NLYSNFLKGSIPPSLGNLTSLIYIDIGNN-LLSG-SIPNEVGNLKSLSDLRLDNN-TLSGS-IPLSLGNLT-KLGTLYLH 258 (353)
Q Consensus 184 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~-~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~L~ 258 (353)
++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999998888888889999999999999 6775 35666788999999999999 88864 566778899 99999999
Q ss_pred cC--cCc-CCcchhccCCCCCCEEeccCCc-CcccCCccccCCCCCCeeeccCCc-ccccCCccCcCCCCCCEEeCcCCc
Q 039642 259 TN--ALF-GSIPYEIGNLKSLSDLQLSYNT-LNGSIPFSLGNLTNLAILYIGINA-LSGSIPNEIGNLKSLLDLRLDNNT 333 (353)
Q Consensus 259 ~n--~l~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~ls~n~-~~~~~~~~~~~~~~L~~L~l~~n~ 333 (353)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 555 4567777889999999999999 777777788999999999999995 43333346788999999999999
Q ss_pred CccccCcccc-CCCCCC
Q 039642 334 LSGSIPLSLG-NLTKLV 349 (353)
Q Consensus 334 l~~~~p~~~~-~l~~L~ 349 (353)
++......+. .++.|+
T Consensus 283 i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 283 VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp SCTTCHHHHHHHSTTSE
T ss_pred cCHHHHHHHHhhCcceE
Confidence 6543333332 244443
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1e-25 Score=204.39 Aligned_cols=244 Identities=21% Similarity=0.239 Sum_probs=191.0
Q ss_pred EEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCC----cCCCCCC-CCCEEEcccCcCCCCCcccccCC-----CC
Q 039642 110 YLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIP----PEIGYLT-HLKLLSFSKNQLSGFIPHEIGRL-----SS 179 (353)
Q Consensus 110 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~~~~~~~~~l~~l-----~~ 179 (353)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999999888877777789999999999986655 6677888 89999999999987766666654 89
Q ss_pred CCEEEcccCcCCccCCcc----CCCC-CCccEEEcccCcccccCCcc----CCC-CCCCCEEEcccCCCcccc----Ccc
Q 039642 180 LNGLNLYSNFLKGSIPPS----LGNL-TSLIYIDIGNNLLSGSIPNE----VGN-LKSLSDLRLDNNTLSGSI----PLS 245 (353)
Q Consensus 180 L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~----~~~-~~~L~~L~l~~n~~~~~~----~~~ 245 (353)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998666553 3444 89999999999998665443 334 369999999999998533 334
Q ss_pred ccCCC-CCCEEEcccCcCcCCcchhc----cCC-CCCCEEeccCCcCccc----CCccccC-CCCCCeeeccCCcccccC
Q 039642 246 LGNLT-KLGTLYLHTNALFGSIPYEI----GNL-KSLSDLQLSYNTLNGS----IPFSLGN-LTNLAILYIGINALSGSI 314 (353)
Q Consensus 246 ~~~l~-~L~~L~L~~n~l~~~~~~~l----~~~-~~L~~L~l~~n~l~~~----~~~~l~~-~~~L~~L~ls~n~~~~~~ 314 (353)
+...+ +|++|++++|.+++..+..+ ... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 99999999999987776544 445 5999999999999863 3334444 469999999999998644
Q ss_pred C----ccCcCCCCCCEEeCcCCcCcc-------ccCccccCCCCCCeeeC
Q 039642 315 P----NEIGNLKSLLDLRLDNNTLSG-------SIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 315 ~----~~~~~~~~L~~L~l~~n~l~~-------~~p~~~~~l~~L~~L~l 353 (353)
+ ..+..+++|+.|++++|.+.+ .++..+..+++|++|++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence 3 345778999999999998443 23446777888888875
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=6.1e-23 Score=181.82 Aligned_cols=191 Identities=27% Similarity=0.399 Sum_probs=160.8
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
.+++.++++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccC-ch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 478899999998864 33 57889999999999999986544 8899999999999999884 33 688999999999
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcc
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG 240 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 240 (353)
+++|.+.+ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. . +..+++|++|++++|.+++
T Consensus 114 l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccCc
Confidence 99999985 33 38899999999999999985433 788999999999999998643 3 8899999999999999985
Q ss_pred ccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcc
Q 039642 241 SIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNG 288 (353)
Q Consensus 241 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 288 (353)
..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 433 7889999999999999976553 7889999999999999975
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=4.1e-22 Score=166.33 Aligned_cols=194 Identities=25% Similarity=0.223 Sum_probs=120.0
Q ss_pred EEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCc
Q 039642 134 FLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNL 213 (353)
Q Consensus 134 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 213 (353)
.++.+++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4444444444 333322 2455666666666554444445556666666666666654444445566666666666666
Q ss_pred ccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCcc
Q 039642 214 LSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFS 293 (353)
Q Consensus 214 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 293 (353)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 665444556667777777777777765445556677777777777777766555556677777888887776553
Q ss_pred ccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCcc
Q 039642 294 LGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLS 341 (353)
Q Consensus 294 l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 341 (353)
.+++|++|+++.|+++|.+|..++.++. ++..|...|..+..
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~ 204 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS 204 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred --CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence 3457788888888888888877776654 45555554444443
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=7.6e-22 Score=164.69 Aligned_cols=181 Identities=25% Similarity=0.215 Sum_probs=156.7
Q ss_pred CEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccC
Q 039642 157 KLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNN 236 (353)
Q Consensus 157 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 236 (353)
+.++++++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 57788888776 455444 468999999999999776667889999999999999999776667889999999999999
Q ss_pred CCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCc
Q 039642 237 TLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPN 316 (353)
Q Consensus 237 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~ 316 (353)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 999666667899999999999999998777777889999999999999999766667889999999999999776
Q ss_pred cCcCCCCCCEEeCcCCcCccccCccccCCCC
Q 039642 317 EIGNLKSLLDLRLDNNTLSGSIPLSLGNLTK 347 (353)
Q Consensus 317 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~ 347 (353)
+.+++|+.|+++.|+++|.+|..++.++.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 35678999999999999999998887653
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=8.2e-22 Score=187.30 Aligned_cols=187 Identities=26% Similarity=0.328 Sum_probs=150.3
Q ss_pred CCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcc
Q 039642 107 HLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLY 186 (353)
Q Consensus 107 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 186 (353)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 79999999999987 66655 378999999999998 677 457899999999999986 666 554 99999999
Q ss_pred cCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCc
Q 039642 187 SNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSI 266 (353)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 266 (353)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|++|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999986 565 57899999999999886 555 57889999999999885 666 55 88999999999886 55
Q ss_pred chhccCCCCC-------CEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCC
Q 039642 267 PYEIGNLKSL-------SDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNL 321 (353)
Q Consensus 267 ~~~l~~~~~L-------~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~ 321 (353)
|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 55 443 66 88999999888 577777778889999999998888777766553
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=3.4e-21 Score=173.69 Aligned_cols=234 Identities=18% Similarity=0.114 Sum_probs=176.7
Q ss_pred CCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCC-cCCCCCCCCCE-EEcccCcCC
Q 039642 90 SAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIP-PEIGYLTHLKL-LSFSKNQLS 167 (353)
Q Consensus 90 ~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~L~~n~~~ 167 (353)
+++++ .+|. .+ .+++++|++++|.++...+.+|.++++|++|++++|.+.+.+| ..|.+++++++ +.+..|.+.
T Consensus 18 ~~~Lt-~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 18 ESKVT-EIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp STTCC-SCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred CCCCC-ccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 44444 4554 33 3589999999999997777789999999999999999876555 45788888776 566678888
Q ss_pred CCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEccc-CcccccCCccCCCCC-CCCEEEcccCCCccccCcc
Q 039642 168 GFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGN-NLLSGSIPNEVGNLK-SLSDLRLDNNTLSGSIPLS 245 (353)
Q Consensus 168 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~ 245 (353)
...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+. .++.|++++|+++ .++..
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~ 172 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNS 172 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTT
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChh
Confidence 77788899999999999999999866665666677888898876 456544445565554 6889999999998 45555
Q ss_pred ccCCCCCCEEEcccCcCcCCcc-hhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCC
Q 039642 246 LGNLTKLGTLYLHTNALFGSIP-YEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSL 324 (353)
Q Consensus 246 ~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L 324 (353)
.....+|+++++.++...+.+| ..+..+++|++|++++|+++. +|. ..+.+|+.|.+.++.--..+|. +..+++|
T Consensus 173 ~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L 248 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLPT-LEKLVAL 248 (350)
T ss_dssp SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSC
T ss_pred hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCCC-chhCcCh
Confidence 5566789999998644335555 567889999999999999984 443 2345666666666544446774 7889999
Q ss_pred CEEeCcCC
Q 039642 325 LDLRLDNN 332 (353)
Q Consensus 325 ~~L~l~~n 332 (353)
+.++++++
T Consensus 249 ~~l~l~~~ 256 (350)
T 4ay9_X 249 MEASLTYP 256 (350)
T ss_dssp CEEECSCH
T ss_pred hhCcCCCC
Confidence 99999864
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=3.7e-21 Score=173.51 Aligned_cols=234 Identities=17% Similarity=0.169 Sum_probs=178.1
Q ss_pred CccceeeeCCC----------CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCC-ccCCCCCCCcE-EeC
Q 039642 70 CTWFGIHCNHA----------GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIP-PQIGNLSMLKF-LGL 137 (353)
Q Consensus 70 c~~~~v~c~~~----------~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l 137 (353)
|.+..|.|+.. .+++++++++|.+. .++...|.++++|++|++++|.+.+.++ .+|.+++++++ +.+
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67778888621 36899999999997 5665589999999999999999876554 56788888775 556
Q ss_pred CCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEccc-CcCCccCCccCCCCC-CccEEEcccCccc
Q 039642 138 SFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYS-NFLKGSIPPSLGNLT-SLIYIDIGNNLLS 215 (353)
Q Consensus 138 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~l~ 215 (353)
..|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67888877778899999999999999999866665666667888888866 455544444555554 6889999999998
Q ss_pred ccCCccCCCCCCCCEEEccc-CCCccccC-ccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCcc
Q 039642 216 GSIPNEVGNLKSLSDLRLDN-NTLSGSIP-LSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFS 293 (353)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~-n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 293 (353)
. ++......++|+++++.+ |.++ .+| ..|..+++|++|++++|.++...+. .+.+|+.|.+.++.--..+| .
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~ 241 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKLP-T 241 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCCC-C
T ss_pred C-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcCC-C
Confidence 5 455555677899999986 4555 555 4678999999999999999654333 35677888777665444666 4
Q ss_pred ccCCCCCCeeeccCCcc
Q 039642 294 LGNLTNLAILYIGINAL 310 (353)
Q Consensus 294 l~~~~~L~~L~ls~n~~ 310 (353)
+..+++|+.++++++..
T Consensus 242 l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 242 LEKLVALMEASLTYPSH 258 (350)
T ss_dssp TTTCCSCCEEECSCHHH
T ss_pred chhCcChhhCcCCCCcc
Confidence 78899999999987643
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=5.2e-21 Score=181.79 Aligned_cols=197 Identities=26% Similarity=0.330 Sum_probs=164.3
Q ss_pred cccee-eeCCCCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcC
Q 039642 71 TWFGI-HCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPE 149 (353)
Q Consensus 71 ~~~~v-~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 149 (353)
.|.++ .|. .++++.++++++.+.+ +|. .+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|.
T Consensus 49 ~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECL-INQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHH-HTTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhccccc-cCCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 68888 675 3589999999999986 666 34 488999999999998 566 457899999999999996 776
Q ss_pred CCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCC
Q 039642 150 IGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLS 229 (353)
Q Consensus 150 l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 229 (353)
+.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~ 183 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLE 183 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCC
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCC
Confidence 655 99999999999986 665 67899999999999985 565 57899999999999996 666 65 8999
Q ss_pred EEEcccCCCccccCccccCCCCC-------CEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCC
Q 039642 230 DLRLDNNTLSGSIPLSLGNLTKL-------GTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNL 297 (353)
Q Consensus 230 ~L~l~~n~~~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~ 297 (353)
.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 184 ~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 184 ALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp EEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred EEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9999999998 6666 554 77 99999999996 578778889999999999999998877766554
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1e-19 Score=153.05 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=119.6
Q ss_pred CEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccC
Q 039642 157 KLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNN 236 (353)
Q Consensus 157 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 236 (353)
+.++++++.+. .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57788888777 5565543 57888888888888666667788888888888888888777778888888888888888
Q ss_pred CCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 237 TLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 237 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8875545556778888888888888877777777788888888888888886666667778888888888887764
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=152.92 Aligned_cols=153 Identities=21% Similarity=0.193 Sum_probs=102.0
Q ss_pred CEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCC-ccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEccc
Q 039642 157 KLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIP-PSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDN 235 (353)
Q Consensus 157 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 235 (353)
+++++++|.++ .+|..+. ..++.|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777776 4554443 355677777777765533 3356677777777777777766555667777777777777
Q ss_pred CCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 236 NTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 236 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77765555556667777777777777766666666666777777777777766556666666777777777776654
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=2.1e-20 Score=164.09 Aligned_cols=186 Identities=26% Similarity=0.352 Sum_probs=145.4
Q ss_pred EECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcC
Q 039642 111 LDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFL 190 (353)
Q Consensus 111 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 190 (353)
+.+..+.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3444554443322 3467889999999998873 44 47888999999999999885443 88889999999999988
Q ss_pred CccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhc
Q 039642 191 KGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEI 270 (353)
Q Consensus 191 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 270 (353)
++ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 74 3 3478889999999999988853 4577888999999999988753 567888899999999998866554 7
Q ss_pred cCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 271 GNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 271 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 175 ~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 788889999999998885 34 47888889999999988875
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=2.1e-19 Score=152.16 Aligned_cols=159 Identities=24% Similarity=0.251 Sum_probs=103.4
Q ss_pred CCCCCCccceeeeCCCCCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCC
Q 039642 65 TKISPCTWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSG 144 (353)
Q Consensus 65 ~~~~~c~~~~v~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 144 (353)
.+.+.|.|.++.|...+ + +.+|. .+ .++|++|++++|.+.+..+..|..+++|++|++++|.+..
T Consensus 14 ~~~~~Cs~~~v~c~~~~-----------l-~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKR-----------H-ASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp CTTCEEETTEEECTTSC-----------C-SSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEeCCEeEccCCC-----------c-CccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence 35678999999987321 2 13333 22 2678888888888877777777777888888888887764
Q ss_pred CCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCC
Q 039642 145 SIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGN 224 (353)
Q Consensus 145 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 224 (353)
..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 44455677777777777777777555555666677777777777666 45555556666666666666665444444555
Q ss_pred CCCCCEEEcccCCCc
Q 039642 225 LKSLSDLRLDNNTLS 239 (353)
Q Consensus 225 ~~~L~~L~l~~n~~~ 239 (353)
+++|+.|++++|.+.
T Consensus 158 l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCCEEECTTSCBC
T ss_pred CCCCCEEEeeCCCcc
Confidence 555555555555544
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=8.3e-20 Score=175.26 Aligned_cols=174 Identities=24% Similarity=0.316 Sum_probs=123.9
Q ss_pred ccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCC
Q 039642 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLN 181 (353)
Q Consensus 102 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 181 (353)
+..+++|+.|++++|.+... + .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 45667788888888877643 3 46777888888888888774433 7778888888888887764 33 577777888
Q ss_pred EEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCc
Q 039642 182 GLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNA 261 (353)
Q Consensus 182 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 261 (353)
.|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 888888877642 3466777788888887777754 456777777777777777775444 6777777777777777
Q ss_pred CcCCcchhccCCCCCCEEeccCCcCccc
Q 039642 262 LFGSIPYEIGNLKSLSDLQLSYNTLNGS 289 (353)
Q Consensus 262 l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 289 (353)
+++. + .+..+++|+.|+|++|.+.+.
T Consensus 187 i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred CCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 7543 3 466777777777777777653
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=4.9e-20 Score=161.73 Aligned_cols=173 Identities=24% Similarity=0.330 Sum_probs=121.2
Q ss_pred ccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCC
Q 039642 102 FSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLN 181 (353)
Q Consensus 102 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 181 (353)
+..+++|+.|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+ + ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 34566777777777776643 2 366677777777777777743 33 6777777777777777764 2 2467777777
Q ss_pred EEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCc
Q 039642 182 GLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNA 261 (353)
Q Consensus 182 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 261 (353)
+|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 777777777642 3566777788888887777754 457777788888888887775433 7777888888888887
Q ss_pred CcCCcchhccCCCCCCEEeccCCcCcc
Q 039642 262 LFGSIPYEIGNLKSLSDLQLSYNTLNG 288 (353)
Q Consensus 262 l~~~~~~~l~~~~~L~~L~l~~n~l~~ 288 (353)
+++ ++ .+..+++|+.|++++|.++.
T Consensus 190 i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 754 33 36777888888888887764
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=2.5e-20 Score=178.86 Aligned_cols=191 Identities=26% Similarity=0.320 Sum_probs=158.7
Q ss_pred CCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcc
Q 039642 107 HLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLY 186 (353)
Q Consensus 107 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 186 (353)
.+..+.+..+.+.+..+ +..+++|+.|++++|.+. .++ .+..+++|++|+|++|.+.+..+ +..+++|+.|+++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34445666666655433 456889999999999988 444 58899999999999999986544 8899999999999
Q ss_pred cCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCc
Q 039642 187 SNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSI 266 (353)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 266 (353)
+|.+.+ + ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..
T Consensus 96 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 999974 3 3688999999999999999853 4588899999999999999854 57889999999999999997766
Q ss_pred chhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCccccc
Q 039642 267 PYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGS 313 (353)
Q Consensus 267 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~ 313 (353)
| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 6 88899999999999999863 3588899999999999999864
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=2.1e-22 Score=194.28 Aligned_cols=56 Identities=7% Similarity=-0.025 Sum_probs=34.1
Q ss_pred CCEEEEEeCCCCcc----eecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCC
Q 039642 81 GRVNSINLTSAGLK----GTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLS 138 (353)
Q Consensus 81 ~~v~~l~l~~~~l~----~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 138 (353)
+.++.++++++.+. +.++. .+.++++|++|++++|.+.+ ++..+..+++|++|+++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred CCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 46778888887775 23333 45677888888888876654 23334444455555444
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=3.1e-19 Score=151.08 Aligned_cols=154 Identities=22% Similarity=0.237 Sum_probs=107.0
Q ss_pred CCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEccc
Q 039642 156 LKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDN 235 (353)
Q Consensus 156 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 235 (353)
-+.++++++.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777766 5554443 6777777777777766677777777777777777777655555567777777777777
Q ss_pred CCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCccccc
Q 039642 236 NTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGS 313 (353)
Q Consensus 236 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~ 313 (353)
|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 7777555555667777777777777774 5566666777777777777777755445566677777777777776643
No 106
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=1.3e-21 Score=192.12 Aligned_cols=265 Identities=20% Similarity=0.148 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccceeeeCCCCCEEEEEeCCCCcceecCcccccCCCCCCEEECC
Q 039642 35 TEEAHALLKWKTSLQNQNGSLLPSWTLNNPTKISPCTWFGIHCNHAGRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLR 114 (353)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~c~~~~v~c~~~~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~ 114 (353)
+.++++++++..+.....+..-..|. ......+.|.+..+. .++++.+++.++.+... +. . .++.++|+
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~~-~-----~l~~l~Ls 199 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPT---GDSTPSGTATNSAVS-TPLTPKIELFANGKDEA-NQ-A-----LLQHKKLS 199 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCc---CCCCccccCCCceec-CCccceEEeeCCCCCcc-hh-h-----HhhcCccC
Confidence 55677888888887654444445564 233345678777665 46788899888877642 22 1 23344444
Q ss_pred CCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccC
Q 039642 115 INQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSI 194 (353)
Q Consensus 115 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 194 (353)
.+.+.+ +++..|.+. ..+..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+
T Consensus 200 ~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~l 262 (727)
T 4b8c_D 200 QYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-EL 262 (727)
T ss_dssp -------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CC
T ss_pred cccccC--------------cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-cc
Confidence 443322 122223332 33444455555555555555554 44444445555555555555555 45
Q ss_pred CccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCC
Q 039642 195 PPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLK 274 (353)
Q Consensus 195 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~ 274 (353)
|..+..+++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..++.+++|++|+|++|.+++.+|..+....
T Consensus 263 p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 340 (727)
T 4b8c_D 263 PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS 340 (727)
T ss_dssp CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH
T ss_pred ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc
Confidence 555555555555555555555 44555555566666666666554 4555556666666666666666555555443221
Q ss_pred -CCCEEeccCCcCcccCCccccCCCCCCeeeccCC--------cccccCCccCcCCCCCCEEeCcCCcCc
Q 039642 275 -SLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGIN--------ALSGSIPNEIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 275 -~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n--------~~~~~~~~~~~~~~~L~~L~l~~n~l~ 335 (353)
....+++++|.+++.+|. .|+.|++++| .+.+..+..+..+..+....+++|.+.
T Consensus 341 ~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 341 VTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred hhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 112345566666555443 3444444444 222222223334444455555555543
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=5.7e-20 Score=166.36 Aligned_cols=178 Identities=26% Similarity=0.246 Sum_probs=145.2
Q ss_pred CcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCccccc-CCCCCCEEEcccCcCCccCCccCCCCCCccEEEcc
Q 039642 132 LKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIG-RLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIG 210 (353)
Q Consensus 132 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 210 (353)
-++++++++.++ .+|..+. +.+++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 368999999888 5776553 4689999999999876666676 88999999999999987777788899999999999
Q ss_pred cCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhc---cCCCCCCEEeccCCcCc
Q 039642 211 NNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEI---GNLKSLSDLQLSYNTLN 287 (353)
Q Consensus 211 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~~~~L~~L~l~~n~l~ 287 (353)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..+ ..+++|+.|++++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999987777778899999999999999987778888899999999999999876544444 56889999999999988
Q ss_pred ccCCccccCCCC--CCeeeccCCcccc
Q 039642 288 GSIPFSLGNLTN--LAILYIGINALSG 312 (353)
Q Consensus 288 ~~~~~~l~~~~~--L~~L~ls~n~~~~ 312 (353)
+..+..+..++. ++.|++++|.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 554456666666 4889999988864
No 108
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=3.7e-22 Score=192.51 Aligned_cols=270 Identities=12% Similarity=0.088 Sum_probs=152.8
Q ss_pred CCEEEEEeCCCCccee----cCcccccCCCCCCEEECCCCCCcc----cCCccCCCCCCCcEEeCCCCcCCCCCCcCCCC
Q 039642 81 GRVNSINLTSAGLKGT----LHDFSFSSFPHLGYLDLRINQFFG----IIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGY 152 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~----~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 152 (353)
++++.++++++.+.+. ++. .+..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+..
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 5788999999987654 222 45678899999999998863 344445678999999999987653 3333334
Q ss_pred CCCCCEEEcc---------------------------cCcCCCCCcccccCCCCCCEEEcccCcCCccCC-ccCCCCCCc
Q 039642 153 LTHLKLLSFS---------------------------KNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIP-PSLGNLTSL 204 (353)
Q Consensus 153 l~~L~~L~L~---------------------------~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L 204 (353)
+++|++|+++ ++.. ..+|..+..+++|++|++++|.+++... ..+..+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 4444444443 3211 2344445555666666666666543222 223445555
Q ss_pred cEEEcccCcccccCCccCCC------------------------------------CCCCCEEEcccCCCccccCccccC
Q 039642 205 IYIDIGNNLLSGSIPNEVGN------------------------------------LKSLSDLRLDNNTLSGSIPLSLGN 248 (353)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~------------------------------------~~~L~~L~l~~n~~~~~~~~~~~~ 248 (353)
++|+++++...+.++..... +++|++|+++.+.+++..+..+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 55555422111111111223 344444444444444333333332
Q ss_pred -CCCCCEEEcc----cCcCcCC-----cchhccCCCCCCEEeccCCc--CcccCCccc-cCCCCCCeeeccCCcccc-cC
Q 039642 249 -LTKLGTLYLH----TNALFGS-----IPYEIGNLKSLSDLQLSYNT--LNGSIPFSL-GNLTNLAILYIGINALSG-SI 314 (353)
Q Consensus 249 -l~~L~~L~L~----~n~l~~~-----~~~~l~~~~~L~~L~l~~n~--l~~~~~~~l-~~~~~L~~L~ls~n~~~~-~~ 314 (353)
+++|++|+++ .|.+++. ++..+..+++|++|++++|. +++..+..+ ..+++|++|++++|++++ .+
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 4555666554 3344332 22334445666666665433 443322222 236788888888888876 34
Q ss_pred CccCcCCCCCCEEeCcCCcCccc-cCccccCCCCCCeeeC
Q 039642 315 PNEIGNLKSLLDLRLDNNTLSGS-IPLSLGNLTKLVTLYL 353 (353)
Q Consensus 315 ~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l 353 (353)
+..+..+++|+.|+|++|++++. ++.....+++|++|+|
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEE
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeEC
Confidence 44456788888899988888754 3444567888888874
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.4e-19 Score=163.81 Aligned_cols=177 Identities=25% Similarity=0.193 Sum_probs=151.6
Q ss_pred CEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCC-CCCCCCEEEcccCcCCCCCcccccCCCCCCEEEccc
Q 039642 109 GYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIG-YLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYS 187 (353)
Q Consensus 109 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 187 (353)
+.++++++.++. +|..+. +.+++|++++|.+++..+..+. ++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578999998875 565443 4689999999999977777777 999999999999999977777899999999999999
Q ss_pred CcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccc---cCCCCCCEEEcccCcCcC
Q 039642 188 NFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSL---GNLTKLGTLYLHTNALFG 264 (353)
Q Consensus 188 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~l~~ 264 (353)
|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|+|++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99997777789999999999999999998888899999999999999999985433444 568999999999999987
Q ss_pred CcchhccCCCC--CCEEeccCCcCcc
Q 039642 265 SIPYEIGNLKS--LSDLQLSYNTLNG 288 (353)
Q Consensus 265 ~~~~~l~~~~~--L~~L~l~~n~l~~ 288 (353)
..+..+..++. ++.|++++|.+..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 76677777776 4889999999873
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=3.7e-19 Score=149.58 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=136.7
Q ss_pred cEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccC
Q 039642 133 KFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNN 212 (353)
Q Consensus 133 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 212 (353)
+.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 68899999888 6776654 78999999999999777778899999999999999999888899999999999999999
Q ss_pred cccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcc
Q 039642 213 LLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNG 288 (353)
Q Consensus 213 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 288 (353)
.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9996666667899999999999999998878889999999999999999988877788889999999999998864
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=149.60 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=133.0
Q ss_pred CcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCc-ccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcc
Q 039642 132 LKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIP-HEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIG 210 (353)
Q Consensus 132 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 210 (353)
-++++++++.++ .+|..+. ..+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 368999999888 5676553 457899999999986644 457888999999999999987777788999999999999
Q ss_pred cCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCccc
Q 039642 211 NNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGS 289 (353)
Q Consensus 211 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 289 (353)
+|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+...
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999887777788999999999999999987788899999999999999999888888888999999999999988754
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=2e-19 Score=148.63 Aligned_cols=151 Identities=23% Similarity=0.276 Sum_probs=85.3
Q ss_pred CCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 039642 178 SSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYL 257 (353)
Q Consensus 178 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 257 (353)
++|+.|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34444444444444 222 3444444555555554333 1224555566666666666665555556666666666666
Q ss_pred ccCcCcCCcchhccCCCCCCEEeccCCc-CcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCcc
Q 039642 258 HTNALFGSIPYEIGNLKSLSDLQLSYNT-LNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSG 336 (353)
Q Consensus 258 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 336 (353)
++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 6666665556666666677777777776 44 333 46666777777777777664 33 46666777777777776653
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=2.9e-19 Score=147.66 Aligned_cols=155 Identities=15% Similarity=0.251 Sum_probs=105.7
Q ss_pred CCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCE
Q 039642 151 GYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSD 230 (353)
Q Consensus 151 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 230 (353)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556666666666665 334 4566666777777666543 2335666777777777777777666666777777778
Q ss_pred EEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcc
Q 039642 231 LRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINAL 310 (353)
Q Consensus 231 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~ 310 (353)
|++++|.+++..+..++.+++|++|++++|.+.+.++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 8887777776666777778888888888887334455 57778888888888888874 33 577788888888888887
Q ss_pred cc
Q 039642 311 SG 312 (353)
Q Consensus 311 ~~ 312 (353)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 53
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=1.1e-22 Score=194.01 Aligned_cols=190 Identities=21% Similarity=0.197 Sum_probs=137.9
Q ss_pred CCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCc-------------CCccCCccCCCCCCccEEE-ccc------
Q 039642 152 YLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNF-------------LKGSIPPSLGNLTSLIYID-IGN------ 211 (353)
Q Consensus 152 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~------ 211 (353)
..++|+.|++++|.+. .+|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 3444555555555544 444445555555555543332 2334444555555555555 333
Q ss_pred -------CcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCC
Q 039642 212 -------NLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYN 284 (353)
Q Consensus 212 -------n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 284 (353)
|.++.. +. ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 426 ~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 426 RSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC
Confidence 333321 11 258999999999985 665 899999999999999996 78889999999999999999
Q ss_pred cCcccCCccccCCCCCCeeeccCCcccccC-CccCcCCCCCCEEeCcCCcCccccCcc---ccCCCCCCeeeC
Q 039642 285 TLNGSIPFSLGNLTNLAILYIGINALSGSI-PNEIGNLKSLLDLRLDNNTLSGSIPLS---LGNLTKLVTLYL 353 (353)
Q Consensus 285 ~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p~~---~~~l~~L~~L~l 353 (353)
.+++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|++++|++++..|.. +..+++|++|++
T Consensus 497 ~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9996 66 7899999999999999999776 899999999999999999999765532 334899999875
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=5.7e-19 Score=152.58 Aligned_cols=171 Identities=22% Similarity=0.223 Sum_probs=139.5
Q ss_pred CCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEE
Q 039642 128 NLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYI 207 (353)
Q Consensus 128 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 207 (353)
.+.++..++++++.+++ ++ .+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 45567788888888874 33 5778899999999999987 455 68889999999999999985443 8889999999
Q ss_pred EcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCc
Q 039642 208 DIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLN 287 (353)
Q Consensus 208 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 287 (353)
++++|.+++ ++. +.. ++|++|++++|.+++ + ..+..+++|++|++++|.+++. + .+..+++|++|++++|+++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999999885 343 333 899999999999985 3 3588899999999999998654 3 5778899999999999998
Q ss_pred ccCCccccCCCCCCeeeccCCccccc
Q 039642 288 GSIPFSLGNLTNLAILYIGINALSGS 313 (353)
Q Consensus 288 ~~~~~~l~~~~~L~~L~ls~n~~~~~ 313 (353)
+. ..+..+++|+.|++++|.+++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 5678889999999999998854
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=2e-18 Score=149.17 Aligned_cols=171 Identities=25% Similarity=0.295 Sum_probs=144.6
Q ss_pred CCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEE
Q 039642 104 SFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGL 183 (353)
Q Consensus 104 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 183 (353)
.+.++..++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556777788888887543 4678899999999999998 555 68899999999999999985543 8899999999
Q ss_pred EcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCc
Q 039642 184 NLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALF 263 (353)
Q Consensus 184 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 263 (353)
++++|.+++ ++.. .. ++|++|++++|.+++. ..+..+++|++|++++|.+++. + .+..+++|++|++++|.++
T Consensus 91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999999985 4433 33 8999999999999863 3588999999999999999853 4 6888999999999999997
Q ss_pred CCcchhccCCCCCCEEeccCCcCccc
Q 039642 264 GSIPYEIGNLKSLSDLQLSYNTLNGS 289 (353)
Q Consensus 264 ~~~~~~l~~~~~L~~L~l~~n~l~~~ 289 (353)
+. ..+..+++|+.|++++|.+++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 76 6688899999999999999854
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=6.4e-22 Score=188.77 Aligned_cols=196 Identities=20% Similarity=0.211 Sum_probs=143.3
Q ss_pred CCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCc-------------CCCCCcccccCCCCCCEEE-cccCcCCc
Q 039642 127 GNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQ-------------LSGFIPHEIGRLSSLNGLN-LYSNFLKG 192 (353)
Q Consensus 127 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~~~~ 192 (353)
..+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34556666666666665 556666666666666654443 3445566666667777776 44432210
Q ss_pred cCCc------cCC--CCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcC
Q 039642 193 SIPP------SLG--NLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFG 264 (353)
Q Consensus 193 ~~~~------~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 264 (353)
++. .+. ....|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|++|++++|.+++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 000 000 01258899999999986 565 899999999999999998 788899999999999999999976
Q ss_pred CcchhccCCCCCCEEeccCCcCcccC-CccccCCCCCCeeeccCCcccccCCcc---CcCCCCCCEEeC
Q 039642 265 SIPYEIGNLKSLSDLQLSYNTLNGSI-PFSLGNLTNLAILYIGINALSGSIPNE---IGNLKSLLDLRL 329 (353)
Q Consensus 265 ~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ls~n~~~~~~~~~---~~~~~~L~~L~l 329 (353)
+| .+..+++|++|++++|++++.. |..+..+++|+.|++++|.+++..|.. +..+++|+.|++
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 66 7889999999999999999776 889999999999999999999665432 234789998874
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2.8e-18 Score=153.27 Aligned_cols=240 Identities=14% Similarity=0.082 Sum_probs=158.1
Q ss_pred CCCCCEEECCCCCCc--ccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCC--------CCCCCEEEcccCcCCCCCcccc
Q 039642 105 FPHLGYLDLRINQFF--GIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGY--------LTHLKLLSFSKNQLSGFIPHEI 174 (353)
Q Consensus 105 l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L~L~~n~~~~~~~~~l 174 (353)
+++|+.|+|++|.+. ......+ +.++.+.+..+.+. +..|.+ +++|+.+++.+ .+....+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 778999999988876 2221111 22334444444322 234455 67777777766 5554445566
Q ss_pred cCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcc----cccCCccCCCC-------------------------
Q 039642 175 GRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLL----SGSIPNEVGNL------------------------- 225 (353)
Q Consensus 175 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~~~~~------------------------- 225 (353)
.+|++|+.+++.+|.+....+..|..+.++..+....+.. .......+..+
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 6777777777777666555555566666665555544211 10111122222
Q ss_pred -CCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCC-ee
Q 039642 226 -KSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLA-IL 303 (353)
Q Consensus 226 -~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~-~L 303 (353)
.+++.+.+.++-...........+++|+.+++++|.++......|.++++|+++++.+| ++......+.++++|+ .+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 33344444433221111111123789999999999987666778999999999999998 7756667889999999 99
Q ss_pred eccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeeeC
Q 039642 304 YIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 304 ~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 353 (353)
++.+ .++...+.+|.+|++|+.+++++|.++...+.+|.++++|+.++.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9998 787677889999999999999999999777789999999999873
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=1.4e-20 Score=181.47 Aligned_cols=270 Identities=17% Similarity=0.170 Sum_probs=137.3
Q ss_pred CCEEEEEeCCC-Cccee-cCcccccCCCCCCEEECCCCCCcccCCcc----CCCCCCCcEEeCCCCc--CCCC-CCcCCC
Q 039642 81 GRVNSINLTSA-GLKGT-LHDFSFSSFPHLGYLDLRINQFFGIIPPQ----IGNLSMLKFLGLSFNQ--FSGS-IPPEIG 151 (353)
Q Consensus 81 ~~v~~l~l~~~-~l~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~--l~~~-~~~~l~ 151 (353)
++++.++++++ .+.+. ++. ...++++|++|++++|.+++..+.. ...+++|++|++++|. +... ++..+.
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 47778888777 33322 222 3446778888888877765543322 2356677777777665 1100 111112
Q ss_pred CCCCCCEEEcccCc--------------------------------------------------CCC----CCcccccCC
Q 039642 152 YLTHLKLLSFSKNQ--------------------------------------------------LSG----FIPHEIGRL 177 (353)
Q Consensus 152 ~l~~L~~L~L~~n~--------------------------------------------------~~~----~~~~~l~~l 177 (353)
.+++|++|++++|. +.. .++..+..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 34555555555541 000 111112245
Q ss_pred CCCCEEEcccCcCCccCC-ccCCCCCCccEEEcccCccccc-CCccCCCCCCCCEEEc----------------------
Q 039642 178 SSLNGLNLYSNFLKGSIP-PSLGNLTSLIYIDIGNNLLSGS-IPNEVGNLKSLSDLRL---------------------- 233 (353)
Q Consensus 178 ~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l---------------------- 233 (353)
++|++|++++|.+++... ..+..+++|++|++++| +.+. ++.....+++|++|++
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 677888887777553222 22345666777766665 2211 1111122344444444
Q ss_pred ------------ccCCCccccCcccc-CCCCCCEEEcc--c----CcCcC-----CcchhccCCCCCCEEeccCCcCccc
Q 039642 234 ------------DNNTLSGSIPLSLG-NLTKLGTLYLH--T----NALFG-----SIPYEIGNLKSLSDLQLSYNTLNGS 289 (353)
Q Consensus 234 ------------~~n~~~~~~~~~~~-~l~~L~~L~L~--~----n~l~~-----~~~~~l~~~~~L~~L~l~~n~l~~~ 289 (353)
..+.+++.....+. .+++|++|+++ + +.+++ .++..+..+++|++|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 44444332222222 35566666666 2 23321 1112234455666666655 44433
Q ss_pred CCccccC-CCCCCeeeccCCcccccCCccC-cCCCCCCEEeCcCCcCccccCc-cccCCCCCCeeeC
Q 039642 290 IPFSLGN-LTNLAILYIGINALSGSIPNEI-GNLKSLLDLRLDNNTLSGSIPL-SLGNLTKLVTLYL 353 (353)
Q Consensus 290 ~~~~l~~-~~~L~~L~ls~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l 353 (353)
.+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|++++..+. ....+++|++|++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 3333333 6677777777777765444333 4577777777777777654443 3344677777653
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=2.5e-17 Score=135.35 Aligned_cols=130 Identities=22% Similarity=0.254 Sum_probs=92.0
Q ss_pred CEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCc-cCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEccc
Q 039642 181 NGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPN-EVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHT 259 (353)
Q Consensus 181 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 259 (353)
+.++++++.++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777775 5565443 2677777777777755443 366777777777777777766667777777777777777
Q ss_pred CcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCccccc
Q 039642 260 NALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGS 313 (353)
Q Consensus 260 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~ 313 (353)
|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777666666667777777777777777766666777777777777777777654
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=1.1e-17 Score=134.55 Aligned_cols=136 Identities=24% Similarity=0.163 Sum_probs=93.3
Q ss_pred CCccEEEcccCccc-ccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEe
Q 039642 202 TSLIYIDIGNNLLS-GSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQ 280 (353)
Q Consensus 202 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 280 (353)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 45566566667777777777776643 5666777777777777777666666666677777777
Q ss_pred ccCCcCcccC-CccccCCCCCCeeeccCCcccccCC---ccCcCCCCCCEEeCcCCcCccccCc
Q 039642 281 LSYNTLNGSI-PFSLGNLTNLAILYIGINALSGSIP---NEIGNLKSLLDLRLDNNTLSGSIPL 340 (353)
Q Consensus 281 l~~n~l~~~~-~~~l~~~~~L~~L~ls~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~p~ 340 (353)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+. ++|+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 7777777432 2566777788888888887775444 35677788888888888776 4554
No 122
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=2.2e-20 Score=180.19 Aligned_cols=271 Identities=15% Similarity=0.084 Sum_probs=167.6
Q ss_pred CCCEEEEEeCCCCcceecCccccc-CCCCCCEEECCCC-CCccc-CCccCCCCCCCcEEeCCCCcCCCCCCc----CCCC
Q 039642 80 AGRVNSINLTSAGLKGTLHDFSFS-SFPHLGYLDLRIN-QFFGI-IPPQIGNLSMLKFLGLSFNQFSGSIPP----EIGY 152 (353)
Q Consensus 80 ~~~v~~l~l~~~~l~~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~ 152 (353)
.+++++++++++.+.+.... .+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+. ....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 35899999999988765544 443 6899999999999 55432 344445789999999999987754333 3347
Q ss_pred CCCCCEEEcccCc--CCC-CCcccccCCCCCCEEEcccCc----------------------------------------
Q 039642 153 LTHLKLLSFSKNQ--LSG-FIPHEIGRLSSLNGLNLYSNF---------------------------------------- 189 (353)
Q Consensus 153 l~~L~~L~L~~n~--~~~-~~~~~l~~l~~L~~L~l~~n~---------------------------------------- 189 (353)
+++|++|++++|. +.. .++.....+++|++|++++|.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7899999999987 221 111222446888888887761
Q ss_pred ----------CCc----cCCccCCCCCCccEEEcccCcccccC-CccCCCCCCCCEEEcccCCCcc-ccCccccCCCCCC
Q 039642 190 ----------LKG----SIPPSLGNLTSLIYIDIGNNLLSGSI-PNEVGNLKSLSDLRLDNNTLSG-SIPLSLGNLTKLG 253 (353)
Q Consensus 190 ----------~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~ 253 (353)
+.. .++..+..+++|++|++++|.+++.. ...+..+++|++|++++| +.. .++.....+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 000 01111224689999999999976532 233568899999999988 432 1222222356666
Q ss_pred EEEc----------------------------------ccCcCcCCcchhcc-CCCCCCEEecc--C----CcCccc---
Q 039642 254 TLYL----------------------------------HTNALFGSIPYEIG-NLKSLSDLQLS--Y----NTLNGS--- 289 (353)
Q Consensus 254 ~L~L----------------------------------~~n~l~~~~~~~l~-~~~~L~~L~l~--~----n~l~~~--- 289 (353)
+|++ ..+.+++..+..+. .+++|++|+++ + +.+++.
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 6666 22333222222222 34555555555 2 233311
Q ss_pred --CCccccCCCCCCeeeccCCcccccCCccCcC-CCCCCEEeCcCCcCccccCccc-cCCCCCCeeeC
Q 039642 290 --IPFSLGNLTNLAILYIGINALSGSIPNEIGN-LKSLLDLRLDNNTLSGSIPLSL-GNLTKLVTLYL 353 (353)
Q Consensus 290 --~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l 353 (353)
++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|+|
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEE
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEEC
Confidence 111134455666666655 444443333443 7888888888888876666555 56888888874
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=8.8e-18 Score=132.23 Aligned_cols=127 Identities=22% Similarity=0.152 Sum_probs=72.3
Q ss_pred CCccEEEcccCccc-ccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEe
Q 039642 202 TSLIYIDIGNNLLS-GSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQ 280 (353)
Q Consensus 202 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 280 (353)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 45555556666666666666666543 4555566666666666666555555555556666666
Q ss_pred ccCCcCccc-CCccccCCCCCCeeeccCCcccccCC---ccCcCCCCCCEEeCc
Q 039642 281 LSYNTLNGS-IPFSLGNLTNLAILYIGINALSGSIP---NEIGNLKSLLDLRLD 330 (353)
Q Consensus 281 l~~n~l~~~-~~~~l~~~~~L~~L~ls~n~~~~~~~---~~~~~~~~L~~L~l~ 330 (353)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666665542 22445555556666666665554333 244555555555554
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=4.4e-17 Score=130.93 Aligned_cols=136 Identities=20% Similarity=0.168 Sum_probs=89.0
Q ss_pred CCCCEEEcccCcCC-ccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 039642 178 SSLNGLNLYSNFLK-GSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLY 256 (353)
Q Consensus 178 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 256 (353)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666655 45555555666666666666666543 4566667777777777777655666666677777777
Q ss_pred cccCcCcCCc-chhccCCCCCCEEeccCCcCcccCC---ccccCCCCCCeeeccCCcccccCCc
Q 039642 257 LHTNALFGSI-PYEIGNLKSLSDLQLSYNTLNGSIP---FSLGNLTNLAILYIGINALSGSIPN 316 (353)
Q Consensus 257 L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~ls~n~~~~~~~~ 316 (353)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 7777775532 2566777777777777777775443 35677778888888877776 4443
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=2e-17 Score=130.13 Aligned_cols=127 Identities=21% Similarity=0.193 Sum_probs=85.3
Q ss_pred CCCCCEEEcccCCCc-cccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCee
Q 039642 225 LKSLSDLRLDNNTLS-GSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAIL 303 (353)
Q Consensus 225 ~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 303 (353)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777776 56666667777777777777776554 456667777777777777775566555566777777
Q ss_pred eccCCccccc-CCccCcCCCCCCEEeCcCCcCccccC---ccccCCCCCCeeeC
Q 039642 304 YIGINALSGS-IPNEIGNLKSLLDLRLDNNTLSGSIP---LSLGNLTKLVTLYL 353 (353)
Q Consensus 304 ~ls~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l 353 (353)
++++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|++|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 7777777652 23556677777777777777775544 45666777777664
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=1.6e-18 Score=170.22 Aligned_cols=161 Identities=24% Similarity=0.306 Sum_probs=121.7
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCcc
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSG 240 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 240 (353)
+..|.+. ..+..+..+++|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|++++|.++
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 3344444 55677888999999999999998 67877889999999999999999 78888999999999999999999
Q ss_pred ccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCC-CCCeeeccCCcccccCCccCc
Q 039642 241 SIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLT-NLAILYIGINALSGSIPNEIG 319 (353)
Q Consensus 241 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~ls~n~~~~~~~~~~~ 319 (353)
.+|..++.+++|++|+|++|.++ .+|..+..+++|++|+|++|.+++.+|..+.... .+..+++++|.+++.+|..
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-- 360 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-- 360 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc--
Confidence 78999999999999999999985 7788899999999999999999988777665432 2335789999999888764
Q ss_pred CCCCCCEEeCcCC
Q 039642 320 NLKSLLDLRLDNN 332 (353)
Q Consensus 320 ~~~~L~~L~l~~n 332 (353)
|+.|+++.|
T Consensus 361 ----l~~l~l~~n 369 (727)
T 4b8c_D 361 ----RRFIEINTD 369 (727)
T ss_dssp -------------
T ss_pred ----cceeEeecc
Confidence 455666666
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.5e-16 Score=129.41 Aligned_cols=130 Identities=25% Similarity=0.315 Sum_probs=69.4
Q ss_pred cEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcc-cccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEccc
Q 039642 133 KFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPH-EIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGN 211 (353)
Q Consensus 133 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 211 (353)
++++++++.++ .+|..+. .++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555554 3444332 2555555555555533332 245555555555555555555555555555555555555
Q ss_pred CcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCC
Q 039642 212 NLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGS 265 (353)
Q Consensus 212 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 265 (353)
|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 555555554555555555555555555555555555555555555555555443
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=3.5e-15 Score=136.33 Aligned_cols=245 Identities=12% Similarity=0.089 Sum_probs=186.2
Q ss_pred cCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccC
Q 039642 97 LHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGR 176 (353)
Q Consensus 97 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~ 176 (353)
++..+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+...-+..|.++++|+.+++.+|.+.......|.
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~- 201 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV- 201 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-
Confidence 444467765 7889988766 555556677774 699999986 56545567889999999999999888844444554
Q ss_pred CCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 039642 177 LSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLY 256 (353)
Q Consensus 177 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 256 (353)
+.+|+.+.+..+ +.......|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++......|.++++|+.++
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEE
Confidence 689999999854 55455667888999999999875 45444555666 789999994 455545567889999999999
Q ss_pred cccCcCc-----CCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcC
Q 039642 257 LHTNALF-----GSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDN 331 (353)
Q Consensus 257 L~~n~l~-----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~ 331 (353)
+.++.+. ......|.++++|+.+++.. .++......+.++++|+.+++..+ ++.....+|.++ +|+.+++++
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 9888764 24456788999999999994 466555668889999999999665 666677889999 999999999
Q ss_pred CcCccccCccccCCC-CCCeeeC
Q 039642 332 NTLSGSIPLSLGNLT-KLVTLYL 353 (353)
Q Consensus 332 n~l~~~~p~~~~~l~-~L~~L~l 353 (353)
|......+..|.+++ +++.|++
T Consensus 355 n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 355 TTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp SSCCBCCCSSCCCSCTTCCEEEE
T ss_pred CCCcccccccccCCCCCccEEEe
Confidence 988866667787775 6777653
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=4.8e-16 Score=125.94 Aligned_cols=130 Identities=25% Similarity=0.268 Sum_probs=72.1
Q ss_pred CCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEccc
Q 039642 180 LNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHT 259 (353)
Q Consensus 180 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 259 (353)
.+.++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345666666655 333322 24566666666666654444455666666666666666544444455566666666666
Q ss_pred CcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 260 NALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 260 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 66654444445555566666666666554333334555566666666665554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=5.5e-16 Score=127.34 Aligned_cols=128 Identities=29% Similarity=0.309 Sum_probs=94.2
Q ss_pred CEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccC
Q 039642 181 NGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTN 260 (353)
Q Consensus 181 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 260 (353)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777776 5565443 57788888888777 56667777788888888888887666667777788888888888
Q ss_pred cCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 261 ALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 261 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
.+++..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8777666677777788888888887775545556777778888888777754
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1.7e-16 Score=141.73 Aligned_cols=239 Identities=13% Similarity=0.044 Sum_probs=145.6
Q ss_pred CCEEEEEeCCCCcc--eecCcccccCCCCCCEEECCCCCCcccCCccCCC--------CCCCcEEeCCCCcCCCCCCcCC
Q 039642 81 GRVNSINLTSAGLK--GTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGN--------LSMLKFLGLSFNQFSGSIPPEI 150 (353)
Q Consensus 81 ~~v~~l~l~~~~l~--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L~l~~n~l~~~~~~~l 150 (353)
++++.++|+++.+. .... ..++.++.+.+..+.+. ..+|.+ +++|+.+++.+ .++..-+..|
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~----~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKA----GTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp TTCCEEEEEEEEECCEEESS----SSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred ccCeEEecCcceeEEecCcc----ccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 46778888887765 1111 11111233333333221 223344 55566666655 4443334455
Q ss_pred CCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcC----CccCCccCCCC-------------------------
Q 039642 151 GYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFL----KGSIPPSLGNL------------------------- 201 (353)
Q Consensus 151 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~l------------------------- 201 (353)
.++++|+.+++.+|.+....+.+|..+.++..+....+.. .......+..+
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 5556666666665555544444555544444444333110 00111112222
Q ss_pred -CCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCC-EE
Q 039642 202 -TSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLS-DL 279 (353)
Q Consensus 202 -~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~-~L 279 (353)
.++..+.+.++-...........+++|+.+++++|.++......|.++.+|+++++.+| +.......|.++++|+ .+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 23344444433211111111123789999999999998666678999999999999998 6566667889999999 99
Q ss_pred eccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeC
Q 039642 280 QLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRL 329 (353)
Q Consensus 280 ~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l 329 (353)
++.+ .++...+..+.++++|+.+++++|.++...+.+|.++++|+.++.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9998 777566678999999999999999999777889999999998864
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=3.4e-15 Score=122.60 Aligned_cols=126 Identities=25% Similarity=0.312 Sum_probs=64.0
Q ss_pred cEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccC
Q 039642 133 KFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNN 212 (353)
Q Consensus 133 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 212 (353)
++++++++.++ .+|..+ .++|++|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555544 344332 134555555555554 44445555555555555555555444444555555555555555
Q ss_pred cccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcC
Q 039642 213 LLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNAL 262 (353)
Q Consensus 213 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 262 (353)
.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55544444455555555555555555533333444555555555555544
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=5.4e-15 Score=119.70 Aligned_cols=129 Identities=23% Similarity=0.270 Sum_probs=58.3
Q ss_pred cEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccC
Q 039642 133 KFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNN 212 (353)
Q Consensus 133 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 212 (353)
+.++++++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34444444444 233222 234555555555544333333444455555555555444333333444445555555555
Q ss_pred cccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcC
Q 039642 213 LLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFG 264 (353)
Q Consensus 213 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 264 (353)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 4444333334444555555555555443322333444555555555554443
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=4.9e-14 Score=128.74 Aligned_cols=242 Identities=10% Similarity=0.075 Sum_probs=187.3
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
.++.+.+..+ +. .+...+|.++ +|+.+.+.. .+......+|.+|++|+.+++.+|.++......|. ..+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 4566666554 33 4555578774 799999986 66666677899999999999999998844445555 689999999
Q ss_pred ccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCc--
Q 039642 162 SKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLS-- 239 (353)
Q Consensus 162 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-- 239 (353)
..+ +......+|.++++|+.+++..+ ++......|.+ .+|+.+.+. +.++.....+|.++++|+.+++.++.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 855 65556678999999999999875 44344455666 789999994 4566566778999999999999988764
Q ss_pred ---cccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCc
Q 039642 240 ---GSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPN 316 (353)
Q Consensus 240 ---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~ 316 (353)
......|.++++|+.+++.. .++......|.++++|+.+.+..+ ++......+.++ +|+.+++++|........
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 34456788999999999984 465555678889999999999765 664556678888 999999999988866667
Q ss_pred cCcCCC-CCCEEeCcCCcCc
Q 039642 317 EIGNLK-SLLDLRLDNNTLS 335 (353)
Q Consensus 317 ~~~~~~-~L~~L~l~~n~l~ 335 (353)
.|..++ +++.|.+..+.+.
T Consensus 364 ~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCCSCTTCCEEEECGGGHH
T ss_pred cccCCCCCccEEEeCHHHHH
Confidence 777774 7889998877544
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.7e-15 Score=122.59 Aligned_cols=110 Identities=22% Similarity=0.154 Sum_probs=49.8
Q ss_pred ccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCC
Q 039642 174 IGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLG 253 (353)
Q Consensus 174 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 253 (353)
+.++.+|+.|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3445556666666665552 232212222555555555555532 3344455555555555555432222224444444
Q ss_pred EEEcccCcCcCCcch--hccCCCCCCEEeccCCcCc
Q 039642 254 TLYLHTNALFGSIPY--EIGNLKSLSDLQLSYNTLN 287 (353)
Q Consensus 254 ~L~L~~n~l~~~~~~--~l~~~~~L~~L~l~~n~l~ 287 (353)
+|++++|.+ +.+|. .+..+++|++|++++|.++
T Consensus 92 ~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC
Confidence 555544444 22222 3344444444444444444
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=3e-15 Score=121.09 Aligned_cols=133 Identities=20% Similarity=0.169 Sum_probs=83.2
Q ss_pred CCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCC
Q 039642 198 LGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLS 277 (353)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 277 (353)
+..+++|++|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3455667777777777663 343222233777777777777643 4566677777777777777544334446667777
Q ss_pred EEeccCCcCcccCCc--cccCCCCCCeeeccCCcccccCCcc----CcCCCCCCEEeCcCCcCc
Q 039642 278 DLQLSYNTLNGSIPF--SLGNLTNLAILYIGINALSGSIPNE----IGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 278 ~L~l~~n~l~~~~~~--~l~~~~~L~~L~ls~n~~~~~~~~~----~~~~~~L~~L~l~~n~l~ 335 (353)
+|++++|.++ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.||+++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777775 3443 5666677777777777776 34442 566777777777776654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=6.3e-18 Score=139.72 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=111.1
Q ss_pred cCCCCCCEEEcccCcCCccCCc------cCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccC
Q 039642 175 GRLSSLNGLNLYSNFLKGSIPP------SLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGN 248 (353)
Q Consensus 175 ~~l~~L~~L~l~~n~~~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 248 (353)
.....++.+++..+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3345666667777777666665 67778888888888888875 55 6777888888888888887 56666666
Q ss_pred CCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCC-ccccCCCCCCeeeccCCcccccCCcc----------
Q 039642 249 LTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIP-FSLGNLTNLAILYIGINALSGSIPNE---------- 317 (353)
Q Consensus 249 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~ls~n~~~~~~~~~---------- 317 (353)
+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++.+|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 6788888888888755 44 46677788888888888874222 35677788888888888887665542
Q ss_pred CcCCCCCCEEeCcCCcCc
Q 039642 318 IGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 318 ~~~~~~L~~L~l~~n~l~ 335 (353)
+..+++|+.|| +|.++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 56778888776 56555
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=8.6e-18 Score=138.88 Aligned_cols=151 Identities=25% Similarity=0.336 Sum_probs=96.8
Q ss_pred CCCCEEEcccCcCCCCCcc------cccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCC
Q 039642 154 THLKLLSFSKNQLSGFIPH------EIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKS 227 (353)
Q Consensus 154 ~~L~~L~L~~n~~~~~~~~------~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 227 (353)
..++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444455555555544443 66677777777777777764 45 6666777777777777776 45555555677
Q ss_pred CCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcc-hhccCCCCCCEEeccCCcCcccCCcc----------ccC
Q 039642 228 LSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIP-YEIGNLKSLSDLQLSYNTLNGSIPFS----------LGN 296 (353)
Q Consensus 228 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~----------l~~ 296 (353)
|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|.. +..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 7777777777764 33 46666777777777777754322 35667777777777777776554432 566
Q ss_pred CCCCCeeeccCCccc
Q 039642 297 LTNLAILYIGINALS 311 (353)
Q Consensus 297 ~~~L~~L~ls~n~~~ 311 (353)
+++|+.|+ ++.++
T Consensus 173 l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 173 LPNLKKLD--GMPVD 185 (198)
T ss_dssp CSSCSEEC--CGGGT
T ss_pred CCCcEEEC--CcccC
Confidence 67777775 55554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=6.8e-14 Score=112.35 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=67.5
Q ss_pred ccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccC
Q 039642 204 LIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSY 283 (353)
Q Consensus 204 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 283 (353)
.+.+++++|.++. +|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4566777776663 44433 25667777777777655566666666777777777766655555556666677777777
Q ss_pred CcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 284 NTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 284 n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
|++++..+..+..+++|++|++++|.++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 76665444456666666777776666654
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.8e-13 Score=110.22 Aligned_cols=105 Identities=25% Similarity=0.315 Sum_probs=71.4
Q ss_pred cEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCC
Q 039642 205 IYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYN 284 (353)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 284 (353)
+.+++++|.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|.+++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 4555443 67777777777777666666777777777777777776555555566777777777777
Q ss_pred cCcccCCccccCCCCCCeeeccCCcccc
Q 039642 285 TLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 285 ~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
++++..+..+..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7775444456667777777777777663
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=3.7e-13 Score=108.06 Aligned_cols=108 Identities=27% Similarity=0.267 Sum_probs=86.4
Q ss_pred CCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcc
Q 039642 179 SLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLH 258 (353)
Q Consensus 179 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 258 (353)
..+.+++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567888888887 4665553 778888888888887777788888888888888888886666667888888888888
Q ss_pred cCcCcCCcchhccCCCCCCEEeccCCcCccc
Q 039642 259 TNALFGSIPYEIGNLKSLSDLQLSYNTLNGS 289 (353)
Q Consensus 259 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 289 (353)
+|.+++..+..+..+++|++|++++|.++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8888776666788888888888888888743
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=8.4e-13 Score=106.33 Aligned_cols=106 Identities=25% Similarity=0.242 Sum_probs=87.9
Q ss_pred CCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEccc
Q 039642 180 LNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHT 259 (353)
Q Consensus 180 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 259 (353)
-+.+++++|.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888886 6676554 7889999999999887788888999999999999999865555678889999999999
Q ss_pred CcCcCCcchhccCCCCCCEEeccCCcCcc
Q 039642 260 NALFGSIPYEIGNLKSLSDLQLSYNTLNG 288 (353)
Q Consensus 260 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 288 (353)
|.+++..+..+..+++|++|++++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99876666668888999999999998874
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.42 E-value=2.4e-11 Score=110.96 Aligned_cols=259 Identities=15% Similarity=0.108 Sum_probs=123.8
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCc--------------------
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQ-------------------- 141 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------------------- 141 (353)
.++++.+..+ +. .+...+|.++++|+.+++.++ ++.....+|.++.+|+.+.+..+-
T Consensus 72 ~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 72 KVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 5777777533 33 444547778888888877644 333334456666666655543320
Q ss_pred -CCCCCCcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcc------
Q 039642 142 -FSGSIPPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLL------ 214 (353)
Q Consensus 142 -l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l------ 214 (353)
........|.++.+|+.+.+.++.. ......|.++.+|+.+.+..+ ++......+.++..|+.+.+..+..
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~ 226 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFA 226 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTT
T ss_pred cccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhh
Confidence 0001123455666677766654422 133345556666666666543 2212222333334443333322211
Q ss_pred ---------------cccCCccCCCCCCCCEEEcccCCCccccC---------------------ccccCCCCCCEEEcc
Q 039642 215 ---------------SGSIPNEVGNLKSLSDLRLDNNTLSGSIP---------------------LSLGNLTKLGTLYLH 258 (353)
Q Consensus 215 ---------------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---------------------~~~~~l~~L~~L~L~ 258 (353)
+......+..+..++.+.+..+... ... ..+..+.+|+.+.+.
T Consensus 227 ~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp TTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEEC
T ss_pred cccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccc
Confidence 1111223344455555555433221 111 123344455555554
Q ss_pred cCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCcccc
Q 039642 259 TNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSI 338 (353)
Q Consensus 259 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 338 (353)
.+ +.......+.++++|+.+++..+ ++......+.++.+|+.+++..+ ++..-..+|.+|++|+.+++..+ +. .+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~ 380 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QY 380 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Eh
Confidence 33 22222334555566666666533 33333345556666666666554 44344455666666666666544 11 23
Q ss_pred CccccCCCCCCee
Q 039642 339 PLSLGNLTKLVTL 351 (353)
Q Consensus 339 p~~~~~l~~L~~L 351 (353)
..+|.++++|+.+
T Consensus 381 ~~~F~~c~~L~~I 393 (394)
T 4fs7_A 381 RYDFEDTTKFKWI 393 (394)
T ss_dssp GGGBCTTCEEEEE
T ss_pred hheecCCCCCcEE
Confidence 3456666666554
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=3.3e-15 Score=135.17 Aligned_cols=183 Identities=19% Similarity=0.199 Sum_probs=109.9
Q ss_pred CCCCCEEEcccCcCCCCCcccc----c-CCCCCCEEEcccCcCCccCCccC-CCCCCccEEEcccCcccccCCccC----
Q 039642 153 LTHLKLLSFSKNQLSGFIPHEI----G-RLSSLNGLNLYSNFLKGSIPPSL-GNLTSLIYIDIGNNLLSGSIPNEV---- 222 (353)
Q Consensus 153 l~~L~~L~L~~n~~~~~~~~~l----~-~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~---- 222 (353)
++.|++|++++|.++......+ . ..++|+.|++++|.++......+ ..+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3568888888888774322222 2 23688888888888764322222 234578888888888764433222
Q ss_pred -CCCCCCCEEEcccCCCcc----ccCccccCCCCCCEEEcccCcCcCCc----chhccCCCCCCEEeccCCcCccc----
Q 039642 223 -GNLKSLSDLRLDNNTLSG----SIPLSLGNLTKLGTLYLHTNALFGSI----PYEIGNLKSLSDLQLSYNTLNGS---- 289 (353)
Q Consensus 223 -~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~---- 289 (353)
...++|++|++++|.++. .++..+...++|++|+|++|.+++.. +..+...++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 345678888888887764 23334456777888888888775432 44556667788888888877643
Q ss_pred CCccccCCCCCCeeeccCCcccccCCccCcCC---C--CCCEEe--CcCCcCc
Q 039642 290 IPFSLGNLTNLAILYIGINALSGSIPNEIGNL---K--SLLDLR--LDNNTLS 335 (353)
Q Consensus 290 ~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~---~--~L~~L~--l~~n~l~ 335 (353)
+...+...++|++|+|++|.+++.....+... . .++.+. +..+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 22234455778888888887765433333221 1 155555 5555554
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=6.3e-15 Score=133.33 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=95.5
Q ss_pred CCCcEEeCCCCcCCCCCCcC----CC-CCCCCCEEEcccCcCCCCCcccc-cCCCCCCEEEcccCcCCccCCccC-----
Q 039642 130 SMLKFLGLSFNQFSGSIPPE----IG-YLTHLKLLSFSKNQLSGFIPHEI-GRLSSLNGLNLYSNFLKGSIPPSL----- 198 (353)
Q Consensus 130 ~~L~~L~l~~n~l~~~~~~~----l~-~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l----- 198 (353)
+.|++|++++|.++...... +. ..++|++|++++|.++......+ ..+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46777777777766322222 12 23577777777777653222222 234567777777777764322222
Q ss_pred CCCCCccEEEcccCccccc----CCccCCCCCCCCEEEcccCCCccc----cCccccCCCCCCEEEcccCcCcCC----c
Q 039642 199 GNLTSLIYIDIGNNLLSGS----IPNEVGNLKSLSDLRLDNNTLSGS----IPLSLGNLTKLGTLYLHTNALFGS----I 266 (353)
Q Consensus 199 ~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~ 266 (353)
...++|++|++++|.+++. ++..+...++|++|++++|.+++. ++..+...++|++|++++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2356777777777777542 333345667777777777777642 234455566777777777777543 2
Q ss_pred chhccCCCCCCEEeccCCcCccc
Q 039642 267 PYEIGNLKSLSDLQLSYNTLNGS 289 (353)
Q Consensus 267 ~~~l~~~~~L~~L~l~~n~l~~~ 289 (353)
+..+...++|++|++++|.+++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHH
Confidence 33344557777777777777653
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.31 E-value=1.2e-10 Score=106.29 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=131.4
Q ss_pred cccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEcccCcCC-------------
Q 039642 101 SFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSKNQLS------------- 167 (353)
Q Consensus 101 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~------------- 167 (353)
+|.++++|+.+.+.++. .......|.++.+|+.+.+..+ ++......|.++..|+.+.+..+...
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 56677777777776442 2233445666777777776554 22222334555555555444332211
Q ss_pred --------CCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCc
Q 039642 168 --------GFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLS 239 (353)
Q Consensus 168 --------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 239 (353)
......+..+..|+.+.+..+... .....+..+..++.+....+.+ ....+..+.+|+.+.+..+ ++
T Consensus 235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~ 309 (394)
T 4fs7_A 235 IIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK 309 (394)
T ss_dssp EEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC
T ss_pred EEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cc
Confidence 011123334444555444433221 2233344555555555443322 2345677888999988765 44
Q ss_pred cccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCcccccCCccCc
Q 039642 240 GSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIG 319 (353)
Q Consensus 240 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~ 319 (353)
......|.++.+|+.+++..+ ++.....+|.++++|+.+++..+ ++......+.+|++|+.+++..+ ++ .+..+|.
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~ 385 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFE 385 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBC
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhheec
Confidence 344567889999999999754 54455668889999999999877 66455668899999999999865 33 3456788
Q ss_pred CCCCCCEE
Q 039642 320 NLKSLLDL 327 (353)
Q Consensus 320 ~~~~L~~L 327 (353)
+|++|+.+
T Consensus 386 ~c~~L~~I 393 (394)
T 4fs7_A 386 DTTKFKWI 393 (394)
T ss_dssp TTCEEEEE
T ss_pred CCCCCcEE
Confidence 88888765
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=4.4e-10 Score=102.56 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=54.0
Q ss_pred EEEEEeCCCCcceecCcccccCCCCCCEEECCCCC---CcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEE
Q 039642 83 VNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQ---FFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLL 159 (353)
Q Consensus 83 v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 159 (353)
++++.+... +. .+...+|.++++|+.+.+..+. ++..-..+|.++.+|+.+.+..+ ++......|..+.+|+.+
T Consensus 66 L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 455555432 22 3444467777777777776542 43334455666666666665443 222333456666677777
Q ss_pred EcccCcCCCCCcccccCCCCCCEEEccc
Q 039642 160 SFSKNQLSGFIPHEIGRLSSLNGLNLYS 187 (353)
Q Consensus 160 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 187 (353)
.+..+. .......|..+.+|+.+.+..
T Consensus 143 ~lp~~~-~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 143 TIPEGV-TSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp ECCTTC-CEECTTTTTTCTTCCEEECCT
T ss_pred ccccee-eeecccceecccccccccccc
Confidence 665432 213334455566666666544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=1.1e-11 Score=111.21 Aligned_cols=104 Identities=23% Similarity=0.218 Sum_probs=83.2
Q ss_pred EEEcccC-cccccCCccCCCCCCCCEEEccc-CCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccC
Q 039642 206 YIDIGNN-LLSGSIPNEVGNLKSLSDLRLDN-NTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSY 283 (353)
Q Consensus 206 ~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 283 (353)
.++++++ .++ .+|. +..+++|++|++++ |.+++..+..|..+++|++|+|++|.+++..|..+.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 777 4677 88888899999986 888876667788888999999999988887787888888899999999
Q ss_pred CcCcccCCccccCCCCCCeeeccCCcccc
Q 039642 284 NTLNGSIPFSLGNLTNLAILYIGINALSG 312 (353)
Q Consensus 284 n~l~~~~~~~l~~~~~L~~L~ls~n~~~~ 312 (353)
|++++..+..+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 988865555555554 8889998888874
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=3.8e-11 Score=107.70 Aligned_cols=105 Identities=26% Similarity=0.216 Sum_probs=92.0
Q ss_pred CEEEcccC-cCCccCCccCCCCCCccEEEccc-CcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcc
Q 039642 181 NGLNLYSN-FLKGSIPPSLGNLTSLIYIDIGN-NLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLH 258 (353)
Q Consensus 181 ~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 258 (353)
..++++++ .++ .+|. +..+++|++|++++ |.+++..+..+..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 787 5788 99999999999996 99998877889999999999999999998888889999999999999
Q ss_pred cCcCcCCcchhccCCCCCCEEeccCCcCcc
Q 039642 259 TNALFGSIPYEIGNLKSLSDLQLSYNTLNG 288 (353)
Q Consensus 259 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 288 (353)
+|.+++..+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999876666665555 9999999999874
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.19 E-value=2.1e-09 Score=98.08 Aligned_cols=259 Identities=8% Similarity=0.058 Sum_probs=153.4
Q ss_pred CEEEEEeCCCCc--ceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEE
Q 039642 82 RVNSINLTSAGL--KGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLL 159 (353)
Q Consensus 82 ~v~~l~l~~~~l--~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 159 (353)
.++.+.+..+.- ...+...+|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+..+- .......|..+..|+.+
T Consensus 88 ~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i 165 (394)
T 4gt6_A 88 SLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTV 165 (394)
T ss_dssp TCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEE
T ss_pred cCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceecccccccc
Confidence 566777654421 12344457888888888777654 333445567788888888886542 22344567777888888
Q ss_pred EcccCcCCCCCcccccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccC---------------------------
Q 039642 160 SFSKNQLSGFIPHEIGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNN--------------------------- 212 (353)
Q Consensus 160 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n--------------------------- 212 (353)
.+..+ +...-..+|. ..+|+.+.+..+... .....+..+.+++.......
T Consensus 166 ~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (394)
T 4gt6_A 166 TLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQR 242 (394)
T ss_dssp ECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTC
T ss_pred cccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccccccceeeccccccccccccccccc
Confidence 77654 2212222333 355666666543221 22223333444433332211
Q ss_pred ---------cccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccC
Q 039642 213 ---------LLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSY 283 (353)
Q Consensus 213 ---------~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 283 (353)
.++..-..+|..+.+|+.+.+..+... .....|.++.+|+.+.+.. .++......|.++.+|+.+++..
T Consensus 243 ~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 243 EDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp CCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT
T ss_pred ccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC
Confidence 112122345667778888887655433 3345677788888888853 34344445677888888888876
Q ss_pred CcCcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCCCCCeee
Q 039642 284 NTLNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLTKLVTLY 352 (353)
Q Consensus 284 n~l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 352 (353)
+ ++......+.+|.+|+++.+..+ ++..-..+|.+|++|+.+++.++.... ..+..+.+|+.+.
T Consensus 321 ~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 321 G-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP 384 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred c-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence 5 44344557788888888888654 554555678888889888888875442 3456666776654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=1.5e-11 Score=110.41 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=77.7
Q ss_pred ccCCCCCCEEEcccCcCCccCCccCCCCCCccEEEcccCcccccCCccC--CCCCCCCEEEccc--CCCcc-----ccCc
Q 039642 174 IGRLSSLNGLNLYSNFLKGSIPPSLGNLTSLIYIDIGNNLLSGSIPNEV--GNLKSLSDLRLDN--NTLSG-----SIPL 244 (353)
Q Consensus 174 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~l~~--n~~~~-----~~~~ 244 (353)
+..+|+|+.|+++++.-. .++. + .+++|+.|++..+.+.......+ ..+++|++|+++. +...+ .+..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 344455555555554211 1222 2 24556666665555443222222 2456666666542 11100 0111
Q ss_pred cc--cCCCCCCEEEcccCcCcCCcchhcc---CCCCCCEEeccCCcCccc----CCccccCCCCCCeeeccCCcccccCC
Q 039642 245 SL--GNLTKLGTLYLHTNALFGSIPYEIG---NLKSLSDLQLSYNTLNGS----IPFSLGNLTNLAILYIGINALSGSIP 315 (353)
Q Consensus 245 ~~--~~l~~L~~L~L~~n~l~~~~~~~l~---~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~ls~n~~~~~~~ 315 (353)
.+ ..+++|++|++.+|.+....+..+. .+++|++|+|++|.+++. ++..+..+++|+.|++++|.++....
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 12 2356777777777766543333232 356777777777777653 22233456777777777777765433
Q ss_pred ccCcC-CCCCCEEeCcCCc
Q 039642 316 NEIGN-LKSLLDLRLDNNT 333 (353)
Q Consensus 316 ~~~~~-~~~L~~L~l~~n~ 333 (353)
..+.. + ...++++.++
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 33322 1 3556777665
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=3.1e-08 Score=89.77 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=43.2
Q ss_pred CEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEc
Q 039642 82 RVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSF 161 (353)
Q Consensus 82 ~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 161 (353)
+++++.+.. +++ .+...+|.++.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +...-...|.. .+|+.+.+
T Consensus 47 ~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred CCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 455666543 222 455558888888888888654 544445566665 5666666543 33122233433 35676666
Q ss_pred cc
Q 039642 162 SK 163 (353)
Q Consensus 162 ~~ 163 (353)
..
T Consensus 121 p~ 122 (379)
T 4h09_A 121 PG 122 (379)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=6.2e-11 Score=106.38 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=100.0
Q ss_pred CCccCCCCCCccEEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCcccc--CCCCCCEEEccc--CcCcCC----
Q 039642 194 IPPSLGNLTSLIYIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLG--NLTKLGTLYLHT--NALFGS---- 265 (353)
Q Consensus 194 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~--n~l~~~---- 265 (353)
+...+..+|+|+.|.+++|.-. .++. + ..++|++|++..|.+.......+. .+++|++|+|+. +...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3345567899999999987321 2333 3 378999999999988754433443 689999999863 221111
Q ss_pred -cchhc--cCCCCCCEEeccCCcCcccCCccc---cCCCCCCeeeccCCccccc----CCccCcCCCCCCEEeCcCCcCc
Q 039642 266 -IPYEI--GNLKSLSDLQLSYNTLNGSIPFSL---GNLTNLAILYIGINALSGS----IPNEIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 266 -~~~~l--~~~~~L~~L~l~~n~l~~~~~~~l---~~~~~L~~L~ls~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 335 (353)
+...+ ..+++|++|++.+|.+.+..+..+ ..+++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11222 247899999999999875432222 3578999999999999874 3444456799999999999988
Q ss_pred cccCc
Q 039642 336 GSIPL 340 (353)
Q Consensus 336 ~~~p~ 340 (353)
...-.
T Consensus 321 d~~~~ 325 (362)
T 2ra8_A 321 DEMKK 325 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=3.7e-07 Score=82.55 Aligned_cols=253 Identities=11% Similarity=0.025 Sum_probs=135.4
Q ss_pred CCEEEEEeCCCCcceecCcccccCCCCCCEEECCCCCCcccCCccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEE
Q 039642 81 GRVNSINLTSAGLKGTLHDFSFSSFPHLGYLDLRINQFFGIIPPQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLS 160 (353)
Q Consensus 81 ~~v~~l~l~~~~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 160 (353)
..++.+.+..+ +. .+...+|.++ +|+.+.+..+ +......+|..+ +|+.+.+..+- .......|.+. +++.+.
T Consensus 69 ~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~ 141 (379)
T 4h09_A 69 YNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT-TEIGNYIFYNS-SVKRIV 141 (379)
T ss_dssp TTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC-CEECTTTTTTC-CCCEEE
T ss_pred CCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc-ccccccccccc-eeeeee
Confidence 36777777543 33 4555577776 5777776543 333333445443 68888886542 21222233332 444444
Q ss_pred cccCcCCCCCcccccCCCCCCEEEcccCcCC-----------------------------------ccCCccCCCCCCcc
Q 039642 161 FSKNQLSGFIPHEIGRLSSLNGLNLYSNFLK-----------------------------------GSIPPSLGNLTSLI 205 (353)
Q Consensus 161 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-----------------------------------~~~~~~l~~l~~L~ 205 (353)
+..+ +.......+..+.+++.+.+..+... ......+..+.+|+
T Consensus 142 ~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~ 220 (379)
T 4h09_A 142 IPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLK 220 (379)
T ss_dssp ECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCS
T ss_pred ccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccc
Confidence 4332 12122234444555555444322111 01122333445555
Q ss_pred EEEcccCcccccCCccCCCCCCCCEEEcccCCCccccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCc
Q 039642 206 YIDIGNNLLSGSIPNEVGNLKSLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNT 285 (353)
Q Consensus 206 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 285 (353)
.+.+..+ +.......+..+..|+.+.+..+ ++......+.++.+|+.+.+..+ +.......+.++++|+.+.+.++.
T Consensus 221 ~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~ 297 (379)
T 4h09_A 221 KITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA 297 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT
T ss_pred eeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccc
Confidence 5555433 22233345566677777777654 33333445666777777777543 323333456677778887777776
Q ss_pred CcccCCccccCCCCCCeeeccCCcccccCCccCcCCCCCCEEeCcCCcCccccCccccCCC
Q 039642 286 LNGSIPFSLGNLTNLAILYIGINALSGSIPNEIGNLKSLLDLRLDNNTLSGSIPLSLGNLT 346 (353)
Q Consensus 286 l~~~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~ 346 (353)
++......+.++.+|+.++|..+ ++..-..+|.+|.+|+.+.+..+ ++..-..+|.++.
T Consensus 298 i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 298 IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 66444556777777888777644 55445566777777777777654 4423334555543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.73 E-value=1.9e-09 Score=87.43 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=69.9
Q ss_pred cCCCCCCCCEEEcccC-CCccc----cCccccCCCCCCEEEcccCcCcCC----cchhccCCCCCCEEeccCCcCccc--
Q 039642 221 EVGNLKSLSDLRLDNN-TLSGS----IPLSLGNLTKLGTLYLHTNALFGS----IPYEIGNLKSLSDLQLSYNTLNGS-- 289 (353)
Q Consensus 221 ~~~~~~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~-- 289 (353)
.+...+.|++|++++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566666666666 55431 233444556677777777766433 233344456777777777777643
Q ss_pred --CCccccCCCCCCeeec--cCCccccc----CCccCcCCCCCCEEeCcCCcCc
Q 039642 290 --IPFSLGNLTNLAILYI--GINALSGS----IPNEIGNLKSLLDLRLDNNTLS 335 (353)
Q Consensus 290 --~~~~l~~~~~L~~L~l--s~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 335 (353)
+...+...++|++|++ ++|.+... +.+.+...++|+.|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344556677778887 66777653 2334455677888888877765
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=4.3e-09 Score=85.35 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=51.7
Q ss_pred CCCCCCCCEEEcccCCCccc----cCccccCCCCCCEEEcccCcCcCC----cchhccCCCCCCEEec--cCCcCcccC-
Q 039642 222 VGNLKSLSDLRLDNNTLSGS----IPLSLGNLTKLGTLYLHTNALFGS----IPYEIGNLKSLSDLQL--SYNTLNGSI- 290 (353)
Q Consensus 222 ~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l--~~n~l~~~~- 290 (353)
+...++|++|++++|.+... +...+...+.|++|+|++|.+... +...+...++|++|++ ++|.+++..
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 34445566666666665432 222334445667777777766433 3444555667777777 667766432
Q ss_pred ---CccccCCCCCCeeeccCCccc
Q 039642 291 ---PFSLGNLTNLAILYIGINALS 311 (353)
Q Consensus 291 ---~~~l~~~~~L~~L~ls~n~~~ 311 (353)
...+...++|++|++++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 233444567777777777664
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.62 E-value=2.9e-09 Score=90.92 Aligned_cols=65 Identities=31% Similarity=0.412 Sum_probs=28.9
Q ss_pred CCCCCEEeccCCcCcc--cCCccccCCCCCCeeeccCCcccccCCccCcCCC--CCCEEeCcCCcCccccC
Q 039642 273 LKSLSDLQLSYNTLNG--SIPFSLGNLTNLAILYIGINALSGSIPNEIGNLK--SLLDLRLDNNTLSGSIP 339 (353)
Q Consensus 273 ~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~ls~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~p 339 (353)
+++|+.|+|++|.+++ .++..+..+++|+.|+|++|++++. ..+..++ +|+.|++++|++.+..|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3445555555555443 2223333445555555555555432 1122222 45555555555554443
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=5.2e-08 Score=77.30 Aligned_cols=83 Identities=11% Similarity=0.074 Sum_probs=39.2
Q ss_pred CCCEEEcccCcCcCCcchhccCCCCCCEEeccCCc-CcccCCccccCC----CCCCeeeccCCc-ccccCCccCcCCCCC
Q 039642 251 KLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNT-LNGSIPFSLGNL----TNLAILYIGINA-LSGSIPNEIGNLKSL 324 (353)
Q Consensus 251 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~----~~L~~L~ls~n~-~~~~~~~~~~~~~~L 324 (353)
.|++||+++|.++......+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. ++..-...+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34455555554444433444455555555555552 443322223332 245555555553 444333334455555
Q ss_pred CEEeCcCCc
Q 039642 325 LDLRLDNNT 333 (353)
Q Consensus 325 ~~L~l~~n~ 333 (353)
+.|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555553
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=1.4e-07 Score=74.80 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=46.4
Q ss_pred CCCEEEcccCCCccccCccccCCCCCCEEEcccCc-CcCCcchhccCC----CCCCEEeccCCc-CcccCCccccCCCCC
Q 039642 227 SLSDLRLDNNTLSGSIPLSLGNLTKLGTLYLHTNA-LFGSIPYEIGNL----KSLSDLQLSYNT-LNGSIPFSLGNLTNL 300 (353)
Q Consensus 227 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~----~~L~~L~l~~n~-l~~~~~~~l~~~~~L 300 (353)
.|++|++++|.++......+..+++|++|+|++|. ++...-..+... ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45566666655554444445556666666666664 444333344442 356666666663 555443445566677
Q ss_pred CeeeccCCc
Q 039642 301 AILYIGINA 309 (353)
Q Consensus 301 ~~L~ls~n~ 309 (353)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777776664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=3e-07 Score=78.42 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=40.1
Q ss_pred CCCCCEEEcccCcCcC--CcchhccCCCCCCEEeccCCcCcccCCccccCCC--CCCeeeccCCcccccCCc-------c
Q 039642 249 LTKLGTLYLHTNALFG--SIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLT--NLAILYIGINALSGSIPN-------E 317 (353)
Q Consensus 249 l~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~ls~n~~~~~~~~-------~ 317 (353)
+++|++|+|++|.+++ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4455555555555544 2334444555666666666665532 1222222 666666666666654442 2
Q ss_pred CcCCCCCCEEe
Q 039642 318 IGNLKSLLDLR 328 (353)
Q Consensus 318 ~~~~~~L~~L~ 328 (353)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 34556666654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.60 E-value=2.2e-05 Score=63.40 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCCCCCCEEEcccC-CCcc----ccCccccCCCCCCEEEcccCcCcCC----cchhccCCCCCCEEeccCCcCcccC---
Q 039642 223 GNLKSLSDLRLDNN-TLSG----SIPLSLGNLTKLGTLYLHTNALFGS----IPYEIGNLKSLSDLQLSYNTLNGSI--- 290 (353)
Q Consensus 223 ~~~~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~--- 290 (353)
.+-+.|++|++++| .+.. .+...+..-+.|+.|+|++|.+... +.+.+..-++|++|+|++|.|++..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455666666653 4432 1223344445666666666666432 2333344466777777777766422
Q ss_pred -CccccCCCCCCeeeccCC---cccc----cCCccCcCCCCCCEEeCcCCcC
Q 039642 291 -PFSLGNLTNLAILYIGIN---ALSG----SIPNEIGNLKSLLDLRLDNNTL 334 (353)
Q Consensus 291 -~~~l~~~~~L~~L~ls~n---~~~~----~~~~~~~~~~~L~~L~l~~n~l 334 (353)
...+..-+.|++|+|++| .+.. .+.+.+...+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 223444456777777654 2222 1333445566777777766643
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.60 E-value=2.2e-05 Score=63.41 Aligned_cols=110 Identities=14% Similarity=0.161 Sum_probs=79.8
Q ss_pred ccccCCCCCCEEEcccC-cCcCC----cchhccCCCCCCEEeccCCcCcccCC----ccccCCCCCCeeeccCCccccc-
Q 039642 244 LSLGNLTKLGTLYLHTN-ALFGS----IPYEIGNLKSLSDLQLSYNTLNGSIP----FSLGNLTNLAILYIGINALSGS- 313 (353)
Q Consensus 244 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~ls~n~~~~~- 313 (353)
..+.+-+.|++|+|++| .+... +.+.+..-++|++|+|++|++.+... ..+..-+.|++|+|++|.|...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34455688999999986 77432 45566777899999999999985432 3344568999999999999863
Q ss_pred ---CCccCcCCCCCCEEeCcCC---cCcc----ccCccccCCCCCCeeeC
Q 039642 314 ---IPNEIGNLKSLLDLRLDNN---TLSG----SIPLSLGNLTKLVTLYL 353 (353)
Q Consensus 314 ---~~~~~~~~~~L~~L~l~~n---~l~~----~~p~~~~~l~~L~~L~l 353 (353)
+.+.+...+.|+.|+|++| .+.. .+...+..-+.|+.|++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l 164 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI 164 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence 4455677788999999976 3443 24445556677877764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.06 E-value=0.0011 Score=49.70 Aligned_cols=57 Identities=23% Similarity=0.213 Sum_probs=42.6
Q ss_pred CEEEcccCcCc-CCcchhccCCCCCCEEeccCCcCcccCCccccCCCCCCeeeccCCccc
Q 039642 253 GTLYLHTNALF-GSIPYEIGNLKSLSDLQLSYNTLNGSIPFSLGNLTNLAILYIGINALS 311 (353)
Q Consensus 253 ~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ls~n~~~ 311 (353)
..++.+++.++ ..+|..+. ++|++|+|++|+++...+..+..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888874 25664432 47899999999998655566788888999999988775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.57 E-value=0.0043 Score=46.49 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=45.2
Q ss_pred CEEEcccCCCc-cccCccccCCCCCCEEEcccCcCcCCcchhccCCCCCCEEeccCCcCc
Q 039642 229 SDLRLDNNTLS-GSIPLSLGNLTKLGTLYLHTNALFGSIPYEIGNLKSLSDLQLSYNTLN 287 (353)
Q Consensus 229 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 287 (353)
..++.++++++ ..+|..+ .++|++|+|++|.++...+..+..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888886 3556443 247999999999997777777888999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.79 E-value=16 Score=25.33 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=16.7
Q ss_pred ccCCCCCCCcEEeCCCCcCCCCCCcCCCCCCCCCEEEccc
Q 039642 124 PQIGNLSMLKFLGLSFNQFSGSIPPEIGYLTHLKLLSFSK 163 (353)
Q Consensus 124 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 163 (353)
.+|.+|.+|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444555555444432 2212233444444454444433
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.41 E-value=17 Score=25.14 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=20.2
Q ss_pred CcCCCCCCCCCEEEcccCcCCCCCcccccCCCCCCEEEccc
Q 039642 147 PPEIGYLTHLKLLSFSKNQLSGFIPHEIGRLSSLNGLNLYS 187 (353)
Q Consensus 147 ~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 187 (353)
...|.++.+|+.+.|-.+ ++..-..+|.+|.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345555666666655543 2223334555555565555543
Done!