Query 039643
Match_columns 520
No_of_seqs 335 out of 2225
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 11:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.3 2.3E-11 5E-16 142.3 12.8 211 98-314 93-321 (968)
2 PLN00113 leucine-rich repeat r 99.2 1.4E-10 3.1E-15 135.6 12.3 82 98-184 212-295 (968)
3 PLN03210 Resistant to P. syrin 99.1 1.2E-09 2.7E-14 129.5 14.8 192 117-311 603-835 (1153)
4 KOG4194 Membrane glycoprotein 98.7 1.5E-08 3.3E-13 106.5 6.9 151 119-271 95-257 (873)
5 KOG4194 Membrane glycoprotein 98.7 4.9E-09 1.1E-13 110.1 1.0 209 98-315 173-430 (873)
6 PLN03210 Resistant to P. syrin 98.6 7.1E-08 1.5E-12 114.6 10.0 210 98-314 611-859 (1153)
7 cd00116 LRR_RI Leucine-rich re 98.6 8.1E-08 1.8E-12 97.5 8.1 109 98-207 23-149 (319)
8 KOG2120 SCF ubiquitin ligase, 98.6 1.7E-09 3.6E-14 105.4 -4.4 176 128-305 187-391 (419)
9 cd00116 LRR_RI Leucine-rich re 98.4 2.7E-07 5.8E-12 93.7 5.5 206 98-314 51-291 (319)
10 KOG0444 Cytoskeletal regulator 98.3 2.6E-08 5.7E-13 105.3 -4.5 256 116-396 93-371 (1255)
11 PRK15387 E3 ubiquitin-protein 98.1 1.6E-05 3.4E-10 89.6 11.9 91 99-206 202-293 (788)
12 KOG4341 F-box protein containi 98.1 7.8E-07 1.7E-11 90.7 0.8 267 88-363 129-435 (483)
13 KOG1909 Ran GTPase-activating 98.1 1.7E-06 3.6E-11 86.5 3.1 171 143-313 87-310 (382)
14 KOG2120 SCF ubiquitin ligase, 98.1 4.2E-07 9.1E-12 88.9 -1.2 186 126-311 159-373 (419)
15 KOG3207 Beta-tubulin folding c 98.1 7.7E-07 1.7E-11 91.1 0.6 190 124-313 119-338 (505)
16 KOG1909 Ran GTPase-activating 98.0 3E-06 6.5E-11 84.7 3.0 191 124-314 28-283 (382)
17 KOG0444 Cytoskeletal regulator 98.0 1.6E-07 3.5E-12 99.5 -6.5 215 88-311 118-372 (1255)
18 KOG3207 Beta-tubulin folding c 98.0 2.8E-06 6.1E-11 87.1 1.9 161 142-316 115-286 (505)
19 PRK15370 E3 ubiquitin-protein 97.9 3.7E-05 7.9E-10 86.9 8.7 197 98-315 178-381 (754)
20 KOG4341 F-box protein containi 97.7 4.3E-06 9.2E-11 85.4 -1.4 187 126-312 138-357 (483)
21 KOG0618 Serine/threonine phosp 97.7 4.9E-06 1.1E-10 92.3 -1.3 214 86-312 254-487 (1081)
22 PRK15387 E3 ubiquitin-protein 97.7 0.00011 2.3E-09 83.0 9.3 192 98-316 222-417 (788)
23 KOG0618 Serine/threonine phosp 97.7 6.3E-06 1.4E-10 91.4 -1.3 162 148-312 241-441 (1081)
24 PRK15370 E3 ubiquitin-protein 97.5 0.00011 2.4E-09 83.1 5.5 197 98-315 199-402 (754)
25 KOG0617 Ras suppressor protein 97.5 4.1E-06 8.9E-11 76.1 -5.3 58 121-180 28-86 (264)
26 PF14580 LRR_9: Leucine-rich r 97.4 0.00016 3.4E-09 67.3 4.2 128 124-269 17-150 (175)
27 KOG3665 ZYG-1-like serine/thre 97.3 0.00014 3.1E-09 81.4 3.5 143 126-268 122-284 (699)
28 PF14580 LRR_9: Leucine-rich r 97.3 0.00018 3.9E-09 66.9 3.5 102 99-207 20-125 (175)
29 KOG1947 Leucine rich repeat pr 97.2 7.7E-05 1.7E-09 79.9 0.4 168 98-270 188-373 (482)
30 KOG1859 Leucine-rich repeat pr 97.1 0.00021 4.5E-09 77.8 1.5 166 99-271 85-291 (1096)
31 PF07723 LRR_2: Leucine Rich R 97.0 0.00065 1.4E-08 42.2 2.5 25 149-173 1-26 (26)
32 KOG0472 Leucine-rich repeat pr 96.7 3E-05 6.5E-10 79.0 -8.3 198 113-314 78-310 (565)
33 KOG0472 Leucine-rich repeat pr 96.5 2.7E-05 5.9E-10 79.3 -9.6 150 117-271 151-309 (565)
34 KOG0617 Ras suppressor protein 96.4 0.00033 7.2E-09 63.9 -2.5 137 114-270 44-184 (264)
35 KOG1947 Leucine rich repeat pr 96.4 0.0024 5.2E-08 68.3 3.5 155 147-311 160-331 (482)
36 KOG1259 Nischarin, modulator o 96.3 0.00055 1.2E-08 67.5 -1.6 123 145-271 281-411 (490)
37 PF13855 LRR_8: Leucine rich r 96.3 0.0016 3.6E-08 49.2 0.9 34 127-160 2-37 (61)
38 KOG3665 ZYG-1-like serine/thre 96.2 0.0033 7.1E-08 70.7 3.4 115 194-309 147-283 (699)
39 KOG1259 Nischarin, modulator o 95.9 0.0065 1.4E-07 60.1 3.6 149 164-314 173-365 (490)
40 KOG4237 Extracellular matrix p 95.9 0.0024 5.3E-08 65.3 0.5 46 115-160 79-128 (498)
41 PF13855 LRR_8: Leucine rich r 95.8 0.01 2.3E-07 44.7 3.6 56 99-159 2-60 (61)
42 KOG4658 Apoptotic ATPase [Sign 95.7 0.0049 1.1E-07 71.1 1.9 100 125-225 544-650 (889)
43 KOG4658 Apoptotic ATPase [Sign 95.3 0.0052 1.1E-07 70.9 0.4 196 116-313 560-782 (889)
44 COG4886 Leucine-rich repeat (L 95.0 0.015 3.3E-07 61.0 3.0 85 121-207 111-198 (394)
45 PLN03150 hypothetical protein; 94.6 0.035 7.5E-07 62.2 4.4 80 127-207 419-502 (623)
46 KOG2982 Uncharacterized conser 94.5 0.022 4.8E-07 56.5 2.4 173 98-272 71-262 (418)
47 smart00579 FBD domain in FBox 94.3 0.025 5.4E-07 44.3 1.8 42 343-384 22-66 (72)
48 COG5238 RNA1 Ran GTPase-activa 94.3 0.021 4.7E-07 55.9 1.7 219 87-314 18-285 (388)
49 PF12799 LRR_4: Leucine Rich r 94.0 0.057 1.2E-06 38.1 3.0 34 127-160 2-36 (44)
50 PRK15386 type III secretion pr 94.0 0.14 3.1E-06 53.8 7.2 133 145-289 49-186 (426)
51 COG4886 Leucine-rich repeat (L 94.0 0.036 7.9E-07 58.2 2.9 101 98-206 116-220 (394)
52 KOG2982 Uncharacterized conser 93.5 0.066 1.4E-06 53.3 3.5 195 119-314 38-262 (418)
53 PLN03150 hypothetical protein; 93.2 0.077 1.7E-06 59.4 3.9 106 149-270 419-526 (623)
54 PF08387 FBD: FBD; InterPro: 93.2 0.089 1.9E-06 38.3 2.9 29 333-362 22-50 (51)
55 KOG3864 Uncharacterized conser 92.9 0.025 5.5E-07 53.1 -0.5 92 115-206 90-187 (221)
56 KOG2739 Leucine-rich acidic nu 92.8 0.05 1.1E-06 53.0 1.5 104 100-206 20-127 (260)
57 COG5238 RNA1 Ran GTPase-activa 92.3 0.15 3.3E-06 50.2 3.9 187 124-313 28-254 (388)
58 KOG2739 Leucine-rich acidic nu 92.0 0.048 1E-06 53.2 0.1 13 194-206 64-76 (260)
59 KOG2123 Uncharacterized conser 91.7 0.023 5.1E-07 55.8 -2.3 79 216-308 40-124 (388)
60 PF12799 LRR_4: Leucine Rich r 91.2 0.18 4E-06 35.4 2.4 35 148-184 1-35 (44)
61 KOG1644 U2-associated snRNP A' 91.0 0.27 5.9E-06 46.4 4.1 78 126-206 42-124 (233)
62 PRK15386 type III secretion pr 90.8 0.44 9.5E-06 50.2 5.9 128 125-269 51-187 (426)
63 KOG3864 Uncharacterized conser 89.1 0.16 3.4E-06 47.9 0.8 56 255-310 121-185 (221)
64 KOG1644 U2-associated snRNP A' 88.2 1.2 2.6E-05 42.2 6.0 60 124-184 62-124 (233)
65 KOG2123 Uncharacterized conser 80.4 0.23 4.9E-06 49.2 -2.5 58 125-183 40-98 (388)
66 KOG0531 Protein phosphatase 1, 79.6 0.67 1.5E-05 49.2 0.4 33 282-314 234-268 (414)
67 KOG0532 Leucine-rich repeat (L 76.5 0.27 5.8E-06 53.0 -3.5 126 117-247 112-247 (722)
68 KOG0531 Protein phosphatase 1, 76.3 1.3 2.7E-05 47.1 1.4 81 122-206 91-173 (414)
69 KOG1859 Leucine-rich repeat pr 74.5 0.73 1.6E-05 51.2 -1.0 36 125-160 83-121 (1096)
70 PF13306 LRR_5: Leucine rich r 74.0 2.3 5E-05 36.5 2.2 56 122-182 8-67 (129)
71 KOG4237 Extracellular matrix p 68.9 2.4 5.1E-05 44.1 1.2 84 143-245 269-357 (498)
72 PF13516 LRR_6: Leucine Rich r 62.9 6 0.00013 23.5 1.8 20 148-167 2-21 (24)
73 smart00367 LRR_CC Leucine-rich 58.6 11 0.00023 23.0 2.4 13 172-184 1-13 (26)
74 PF00560 LRR_1: Leucine Rich R 54.2 7 0.00015 22.8 1.0 13 127-139 1-13 (22)
75 PF13306 LRR_5: Leucine rich r 52.5 16 0.00036 31.0 3.5 12 170-181 9-20 (129)
76 PF13504 LRR_7: Leucine rich r 51.2 11 0.00024 20.6 1.4 13 148-160 1-13 (17)
77 KOG0532 Leucine-rich repeat (L 47.3 4.8 0.00011 43.8 -0.8 106 94-207 139-246 (722)
78 KOG4579 Leucine-rich repeat (L 46.0 2.1 4.5E-05 38.3 -3.2 61 122-184 49-111 (177)
79 smart00368 LRR_RI Leucine rich 38.5 34 0.00074 21.3 2.4 21 148-168 2-22 (28)
80 PF12937 F-box-like: F-box-lik 33.4 13 0.00029 26.0 -0.1 19 6-24 17-35 (47)
81 KOG4579 Leucine-rich repeat (L 25.7 40 0.00088 30.3 1.5 47 114-160 64-112 (177)
82 PF00646 F-box: F-box domain; 20.5 23 0.0005 24.6 -0.8 23 6-28 19-41 (48)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.27 E-value=2.3e-11 Score=142.33 Aligned_cols=211 Identities=15% Similarity=0.099 Sum_probs=124.5
Q ss_pred CCceEEEEEecCCCCCcccccCcccc-cCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIY-SAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~-~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
..++.|++... .....+|..++ .+++|++|+|++|.+........+++|++|+|+++.+.. .++..+.+++.|+
T Consensus 93 ~~L~~L~Ls~n----~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~ 167 (968)
T PLN00113 93 PYIQTINLSNN----QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLK 167 (968)
T ss_pred CCCCEEECCCC----ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCC
Confidence 46666666543 11235677666 678888888887765321123567888888888777632 2334466778888
Q ss_pred eeeeeccCCc--ceeccccccccceEEEecccCCC--CceeeeCCceeEEEecc-------ccccCCCCCcceEEecccc
Q 039643 177 DLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIV 245 (520)
Q Consensus 177 ~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~ 245 (520)
.|+|.+|... ..-.+.++++|+.|++.+|.... +...-..++|++|.+.. +..+.++++|++|+++++.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 8888877522 12234457788888887776321 11122456777776641 2345667777777777766
Q ss_pred cchhHHHHHHhCCcccceeeccccccccccc---cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCC
Q 039643 246 LEDQEFHELISKFPLLEDLSVSSSQPLERVK---FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 246 ~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~---~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~ 314 (520)
+++. +...++++++|+.|.++++......+ ..+.+|++|+++.|.... ..+..+++|+.|++.++.+.
T Consensus 248 l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 248 LTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred eccc-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 5442 33446677777777777665322111 124567777776543221 34456666777776666443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.16 E-value=1.4e-10 Score=135.63 Aligned_cols=82 Identities=21% Similarity=0.075 Sum_probs=49.1
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC--CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD--EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL 175 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~--~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L 175 (520)
.++++|++... .....+|..+..+++|++|+|++|.+. .|..+.++++|++|+|.++.+.+ .++.-+.+++.|
T Consensus 212 ~~L~~L~L~~n----~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L 286 (968)
T PLN00113 212 KSLKWIYLGYN----NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQKL 286 (968)
T ss_pred CCccEEECcCC----ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec-cCchhHhhccCc
Confidence 46777776553 122356777777777777777777552 35566677777777777766522 122223445666
Q ss_pred ceeeeeccC
Q 039643 176 EDLSLRYTL 184 (520)
Q Consensus 176 E~L~L~~c~ 184 (520)
+.|++++|.
T Consensus 287 ~~L~Ls~n~ 295 (968)
T PLN00113 287 ISLDLSDNS 295 (968)
T ss_pred CEEECcCCe
Confidence 666666553
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.07 E-value=1.2e-09 Score=129.48 Aligned_cols=192 Identities=19% Similarity=0.226 Sum_probs=87.6
Q ss_pred ccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee--cccc
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF--SVSK 193 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--~I~~ 193 (520)
.+|..+ ...+|+.|+|.++.+.. +.....+++|+.|+|+++..- ..++. ++.+++||.|+|.+|..+..+ .+..
T Consensus 603 ~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 603 CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhc
Confidence 445443 45566666666655432 444455666666666554320 00111 344566666666665443321 2333
Q ss_pred ccccceEEEecccCCCC-ceeeeCCceeEEEeccccccC----CCCCcceEEecccccch--------------------
Q 039643 194 AHKLKNMVIVDYSRSSE-LESIVAPSLQQLTLVRVIVVA----TCPNLKKLHLSEIVLED-------------------- 248 (520)
Q Consensus 194 ~~~Lk~L~I~~~~~~~~-~~~i~aP~L~~L~l~~~~~~~----~l~~L~~L~L~~~~~~~-------------------- 248 (520)
+++|+.|++.+|..... ...++.++|++|.+.+...+. ...+|++|+++.+.+..
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKS 759 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccch
Confidence 45555555555532100 011233444444443211111 11233333333322110
Q ss_pred --------hHHHHHHhCCcccceeeccccccccccc---cccccccEEEeecCCchhHH--hcCCCCccEeEeccc
Q 039643 249 --------QEFHELISKFPLLEDLSVSSSQPLERVK---FSSNLLKRVAFLFCRSLRAV--DLDTPNLLSFTFESV 311 (520)
Q Consensus 249 --------~~~~~ll~~l~~L~~L~L~~~~~l~~~~---~~f~~L~~L~L~~c~~l~~l--L~~~P~L~~L~l~~~ 311 (520)
..........++|+.|.|++|..+..++ ..+++|+.|+|.+|.++..+ ..++++|+.|+++++
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCC
Confidence 0000111234567777777665433222 13456777777777665411 124677777777765
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.74 E-value=1.5e-08 Score=106.46 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=100.7
Q ss_pred CcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccC--Ccceecccccc
Q 039643 119 PQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTL--GLKFFSVSKAH 195 (520)
Q Consensus 119 P~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~--~l~~l~I~~~~ 195 (520)
+..++.+++|+.+.|..+.+.. |........|+.|+|.++.+..-.-+ -++..|.||.|+|+.+. .+..-+.....
T Consensus 95 ~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDLSrN~is~i~~~sfp~~~ 173 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDLSRNLISEIPKPSFPAKV 173 (873)
T ss_pred HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHH-HHHhHhhhhhhhhhhchhhcccCCCCCCCC
Confidence 3456778899999999998855 55555556699999999877321111 23556999999999874 23333444457
Q ss_pred ccceEEEecccCCC-Cceee-eCCceeEEEec-------cccccCCCCCcceEEecccccchhHHHHHHhCCcccceeec
Q 039643 196 KLKNMVIVDYSRSS-ELESI-VAPSLQQLTLV-------RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSV 266 (520)
Q Consensus 196 ~Lk~L~I~~~~~~~-~~~~i-~aP~L~~L~l~-------~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L 266 (520)
++++|++.++.... +.-.+ ...+|.+|.+. ....|.++|+|+.|+|..|.+.... ---|+++++||.|.+
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhhhh
Confidence 89999999887421 11111 12367777774 1335678999999999877764311 124678888888888
Q ss_pred ccccc
Q 039643 267 SSSQP 271 (520)
Q Consensus 267 ~~~~~ 271 (520)
..+..
T Consensus 253 qrN~I 257 (873)
T KOG4194|consen 253 QRNDI 257 (873)
T ss_pred hhcCc
Confidence 77653
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.67 E-value=4.9e-09 Score=110.08 Aligned_cols=209 Identities=18% Similarity=0.143 Sum_probs=114.3
Q ss_pred CCceEEEEEecCCCCCcccccC-cccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecC---hHHHHHH---
Q 039643 98 NGVKELHIVVESSPHESAYTLP-QAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYAN---EQMVHNL--- 168 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP-~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~---~~~l~~L--- 168 (520)
-++++|+|.... ...+- .++-++.+|..|+|+.+++.. |. .+..+|.|+.|+|..+++. .-.|+.+
T Consensus 173 ~ni~~L~La~N~-----It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 173 VNIKKLNLASNR-----ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL 247 (873)
T ss_pred CCceEEeecccc-----ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence 467888887641 22222 233345677888888776644 43 3455777777777766541 1111111
Q ss_pred -----------------HhcCCCcceeeeeccCC--cceeccccccccceEEEecccCCCCceee----eCCceeEEEec
Q 039643 169 -----------------IAECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSELESI----VAPSLQQLTLV 225 (520)
Q Consensus 169 -----------------ls~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i----~aP~L~~L~l~ 225 (520)
+-+|..+|+|+|..+.- +..-.+-|+.+|+.|+++.+.. ..+.+ .+++|+.|.++
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI--~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI--QRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh--heeecchhhhcccceeEecc
Confidence 22344444444444321 1111122456666666666542 22332 35677777665
Q ss_pred c-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc---cccccc---ccccccEEEeecCCc
Q 039643 226 R-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP---LERVKF---SSNLLKRVAFLFCRS 292 (520)
Q Consensus 226 ~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~---l~~~~~---~f~~L~~L~L~~c~~ 292 (520)
. +.++..+..|++|.|+.|.++. .-...+.++++|++|+|..+.. ++.... ..+.|++|.+.+ ++
T Consensus 326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nq 403 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQ 403 (873)
T ss_pred ccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ce
Confidence 1 2234556667777777666532 2234566777788887777664 222111 245677777776 33
Q ss_pred hh----HHhcCCCCccEeEecccCCCC
Q 039643 293 LR----AVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 293 l~----~lL~~~P~L~~L~l~~~~~~~ 315 (520)
+. .-+...++||.|++.++.+.+
T Consensus 404 lk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 404 LKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred eeecchhhhccCcccceecCCCCccee
Confidence 32 555677788888887775544
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.65 E-value=7.1e-08 Score=114.64 Aligned_cols=210 Identities=20% Similarity=0.214 Sum_probs=128.1
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEecc-ccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGC-RLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c-~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.++++|++... ....+|..+..+++|+.|+|+++ .+...+....+++|++|+|.+|..- ..++.-+..++.|+
T Consensus 611 ~~L~~L~L~~s-----~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~ 684 (1153)
T PLN03210 611 ENLVKLQMQGS-----KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLE 684 (1153)
T ss_pred cCCcEEECcCc-----cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCC
Confidence 56777777543 23456777777888888888876 3444345677888888888887541 12334456778888
Q ss_pred eeeeeccCCcceeccc-cccccceEEEecccCCC--Cc-------------------eeeeCCceeEEEeccc-------
Q 039643 177 DLSLRYTLGLKFFSVS-KAHKLKNMVIVDYSRSS--EL-------------------ESIVAPSLQQLTLVRV------- 227 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~-~~~~Lk~L~I~~~~~~~--~~-------------------~~i~aP~L~~L~l~~~------- 227 (520)
.|++.+|..++.+... ++++|+.|.+++|.... +. ..+..++|++|.+...
T Consensus 685 ~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 685 DLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred EEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence 8888888765543221 36777777777774210 00 0112233333333210
Q ss_pred -------cccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--ccccccccccEEEeecCCchhHHhc
Q 039643 228 -------IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVKFSSNLLKRVAFLFCRSLRAVDL 298 (520)
Q Consensus 228 -------~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~~~f~~L~~L~L~~c~~l~~lL~ 298 (520)
......++|++|+++++..... +...++++++|+.|.|++|..+. +.+..+++|++|++++|..+..+..
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 0011235777888876543322 33447788999999999887654 3334567888888888876654333
Q ss_pred CCCCccEeEecccCCC
Q 039643 299 DTPNLLSFTFESVRIP 314 (520)
Q Consensus 299 ~~P~L~~L~l~~~~~~ 314 (520)
..++|+.|++.++.+.
T Consensus 844 ~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 844 ISTNISDLNLSRTGIE 859 (1153)
T ss_pred cccccCEeECCCCCCc
Confidence 4456777777666544
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.62 E-value=8.1e-08 Score=97.48 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=68.7
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--------CcccCCCCCCCEEEecceecCh---HHHH
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--------PLIAINLNSLKNLSLQRVYANE---QMVH 166 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--------p~~~~~l~sLk~L~L~~v~~~~---~~l~ 166 (520)
.++++|++....-.......++..+...++|++|+++++.+.. +..+..+++|+.|+|+++.+.. ..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 4588888876421111123466666677788999888865541 2234567889999998887732 3344
Q ss_pred HHHhcCCCcceeeeeccCCcc----ee--ccccc-cccceEEEecccC
Q 039643 167 NLIAECCSLEDLSLRYTLGLK----FF--SVSKA-HKLKNMVIVDYSR 207 (520)
Q Consensus 167 ~Lls~CP~LE~L~L~~c~~l~----~l--~I~~~-~~Lk~L~I~~~~~ 207 (520)
.+..+ +.|++|++.+|.... .+ .+..+ ++|+.|++.+|..
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 45555 679999998885321 11 12234 7888888888874
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.7e-09 Score=105.38 Aligned_cols=176 Identities=25% Similarity=0.283 Sum_probs=91.3
Q ss_pred ccEEEEeccccCC---CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee----ccccccccceE
Q 039643 128 LTTLVLNGCRLDE---PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF----SVSKAHKLKNM 200 (520)
Q Consensus 128 L~~L~L~~c~l~~---p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l----~I~~~~~Lk~L 200 (520)
|++|+|++-.+.. ..-...+..||.|+|.+.+++|. +..-++.-.+|+.|+|+.|+|+... -++.+..|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5555665532211 01233455566666666655432 2222344455666666666554421 12335556666
Q ss_pred EEecccCCCCcee--e--eCCceeEEEecccc----------ccCCCCCcceEEecc-cccchhHHHHHHhCCcccceee
Q 039643 201 VIVDYSRSSELES--I--VAPSLQQLTLVRVI----------VVATCPNLKKLHLSE-IVLEDQEFHELISKFPLLEDLS 265 (520)
Q Consensus 201 ~I~~~~~~~~~~~--i--~aP~L~~L~l~~~~----------~~~~l~~L~~L~L~~-~~~~~~~~~~ll~~l~~L~~L~ 265 (520)
.++.|....+.+. + -.++|..|++.+.. -...||+|.+|+|++ ..++++ +...+.+++.|+.|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeee
Confidence 6666553221110 0 12444444443210 125688888888875 345443 444556788888888
Q ss_pred ccccccccccc----cccccccEEEeecCCc---hhHHhcCCCCccE
Q 039643 266 VSSSQPLERVK----FSSNLLKRVAFLFCRS---LRAVDLDTPNLLS 305 (520)
Q Consensus 266 L~~~~~l~~~~----~~f~~L~~L~L~~c~~---l~~lL~~~P~L~~ 305 (520)
++.|..+.+.. ...+.|.+|++.+|-. +.-+.+.+|+|+.
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 88887654322 1245778887777633 2244456666643
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.42 E-value=2.7e-07 Score=93.68 Aligned_cols=206 Identities=17% Similarity=0.142 Sum_probs=121.3
Q ss_pred CCceEEEEEecCCC--CCcccccCcccccCCCccEEEEeccccC--CCcccCCC---CCCCEEEecceecChHHHH---H
Q 039643 98 NGVKELHIVVESSP--HESAYTLPQAIYSAKLLTTLVLNGCRLD--EPLIAINL---NSLKNLSLQRVYANEQMVH---N 167 (520)
Q Consensus 98 ~~VkeL~L~~~~~~--~~~~~~LP~~l~~~~sL~~L~L~~c~l~--~p~~~~~l---~sLk~L~L~~v~~~~~~l~---~ 167 (520)
.+++++.+...... ......++..+..+++|+.|+|++|.+. .+..+..+ ++|+.|+++++.+++.... .
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 45888887654211 0111234556667889999999998764 22333333 4599999999988544443 3
Q ss_pred HHhcC-CCcceeeeeccCCc----cee--ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEE
Q 039643 168 LIAEC-CSLEDLSLRYTLGL----KFF--SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLH 240 (520)
Q Consensus 168 Lls~C-P~LE~L~L~~c~~l----~~l--~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~ 240 (520)
.+..+ +.|+.|++.+|... ..+ .+.++++|+.|++.++......... + ...+..+++|++|+
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----l-------~~~l~~~~~L~~L~ 199 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA----L-------AEGLKANCNLEVLD 199 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH----H-------HHHHHhCCCCCEEe
Confidence 45566 99999999999632 111 1334578999999888642110000 0 00123345777777
Q ss_pred ecccccchhH---HHHHHhCCcccceeecccccccc----cccc----ccccccEEEeecCCch-------hHHhcCCCC
Q 039643 241 LSEIVLEDQE---FHELISKFPLLEDLSVSSSQPLE----RVKF----SSNLLKRVAFLFCRSL-------RAVDLDTPN 302 (520)
Q Consensus 241 L~~~~~~~~~---~~~ll~~l~~L~~L~L~~~~~l~----~~~~----~f~~L~~L~L~~c~~l-------~~lL~~~P~ 302 (520)
++++.+++.. +...+..+++|+.|++++|..-. .... ...+|++|.+.+|.-. ...+...|+
T Consensus 200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279 (319)
T ss_pred ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence 7766655432 33445666777777777765311 1111 1256777777766431 144455577
Q ss_pred ccEeEecccCCC
Q 039643 303 LLSFTFESVRIP 314 (520)
Q Consensus 303 L~~L~l~~~~~~ 314 (520)
|+.++++++.+.
T Consensus 280 L~~l~l~~N~l~ 291 (319)
T cd00116 280 LLELDLRGNKFG 291 (319)
T ss_pred ccEEECCCCCCc
Confidence 888888777665
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.32 E-value=2.6e-08 Score=105.27 Aligned_cols=256 Identities=18% Similarity=0.134 Sum_probs=152.7
Q ss_pred cccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC-cceecccc
Q 039643 116 YTLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG-LKFFSVSK 193 (520)
Q Consensus 116 ~~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~-l~~l~I~~ 193 (520)
..+|..+|.++.|+.|+|+.+.+. +|.....=.++-+|.|+++.++. .-..++-+..-|-.|+|+++.- .-+..+..
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLEMLPPQIRR 171 (1255)
T ss_pred CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence 457888999999999999998874 46666677788888998887621 1122333445566777777641 11223444
Q ss_pred ccccceEEEecccCCCCceeeeCCc---eeEEEec--------cccccCCCCCcceEEecccccchhHHHHHHhCCcccc
Q 039643 194 AHKLKNMVIVDYSRSSELESIVAPS---LQQLTLV--------RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLE 262 (520)
Q Consensus 194 ~~~Lk~L~I~~~~~~~~~~~i~aP~---L~~L~l~--------~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~ 262 (520)
+..|++|.++++... ....-..|+ |+.|.++ .+.++.++.||.+++++.+.... ++.-+-++++|+
T Consensus 172 L~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~Lr 248 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLR 248 (1255)
T ss_pred HhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhh
Confidence 678888888877521 000112344 3444443 24567888999999999877642 445667899999
Q ss_pred eeecccccccc-ccc-cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCC--Ccc--cccccCCCcEEE-Eec
Q 039643 263 DLSVSSSQPLE-RVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIP--TIS--ISASHQCPWNVF-FVH 332 (520)
Q Consensus 263 ~L~L~~~~~l~-~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~--~~~--~~~l~~~~L~v~-~~~ 332 (520)
.|.|+++..-+ ..+ ....+|+.|.++. +.+. .-+-.+|+|+.|...++.+. +++ +..+.+ |++. ..+
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~--Levf~aan 325 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ--LEVFHAAN 325 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh--hHHHHhhc
Confidence 99999876411 111 1234677777765 3332 34455677777766665433 220 111111 1110 011
Q ss_pred cccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643 333 EHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV 396 (520)
Q Consensus 333 ~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~ 396 (520)
+ ..++++.-+-.+..|+.|.+.+ |. -+ .+|.+..-|| +|+.|.+..
T Consensus 326 N--------~LElVPEglcRC~kL~kL~L~~-Nr-------Li-TLPeaIHlL~-~l~vLDlre 371 (1255)
T KOG0444|consen 326 N--------KLELVPEGLCRCVKLQKLKLDH-NR-------LI-TLPEAIHLLP-DLKVLDLRE 371 (1255)
T ss_pred c--------ccccCchhhhhhHHHHHhcccc-cc-------ee-echhhhhhcC-CcceeeccC
Confidence 1 1456677888888999999886 21 11 1355555566 777776664
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.13 E-value=1.6e-05 Score=89.61 Aligned_cols=91 Identities=21% Similarity=0.179 Sum_probs=51.2
Q ss_pred CceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643 99 GVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED 177 (520)
Q Consensus 99 ~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~ 177 (520)
+-..|++... ....+|..+. ++|+.|.+.++.+.. |. ..++|++|+|+++.+.. ++. ..+.|+.
T Consensus 202 ~~~~LdLs~~-----~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~ 266 (788)
T PRK15387 202 GNAVLNVGES-----GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLE 266 (788)
T ss_pred CCcEEEcCCC-----CCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccce
Confidence 4455555442 2346787665 378888888877643 32 35788888888887631 111 1356777
Q ss_pred eeeeccCCcceeccccccccceEEEeccc
Q 039643 178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYS 206 (520)
Q Consensus 178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~ 206 (520)
|++.++. +..+.-. .++|++|.+.++.
T Consensus 267 L~Ls~N~-L~~Lp~l-p~~L~~L~Ls~N~ 293 (788)
T PRK15387 267 LSIFSNP-LTHLPAL-PSGLCKLWIFGNQ 293 (788)
T ss_pred eeccCCc-hhhhhhc-hhhcCEEECcCCc
Confidence 7776653 1111100 2345555555544
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.10 E-value=7.8e-07 Score=90.68 Aligned_cols=267 Identities=17% Similarity=0.192 Sum_probs=158.6
Q ss_pred HHHHHHHHHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccc-cCC---CcccCCCCCCCEEEecceec-Ch
Q 039643 88 VDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCR-LDE---PLIAINLNSLKNLSLQRVYA-NE 162 (520)
Q Consensus 88 v~~Wl~~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~-l~~---p~~~~~l~sLk~L~L~~v~~-~~ 162 (520)
|...+..+ ...+|+|.+...- ....-.+-.....|+++++|.+.+|. ++. -.....++.|+.|.|..|.. ++
T Consensus 129 V~~~~~Rc-gg~lk~LSlrG~r--~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 129 VENMISRC-GGFLKELSLRGCR--AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred eehHhhhh-ccccccccccccc--cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence 44444332 2457888887642 12222344445568888888888884 332 12345778888888888655 77
Q ss_pred HHHHHHHhcCCCcceeeeeccCCcce----eccccccccceEEEecccCCCCc--eeeeC--CceeEEEeccc-----cc
Q 039643 163 QMVHNLIAECCSLEDLSLRYTLGLKF----FSVSKAHKLKNMVIVDYSRSSEL--ESIVA--PSLQQLTLVRV-----IV 229 (520)
Q Consensus 163 ~~l~~Lls~CP~LE~L~L~~c~~l~~----l~I~~~~~Lk~L~I~~~~~~~~~--~~i~a--P~L~~L~l~~~-----~~ 229 (520)
..+..+..+||+|++|.++.|..+.. ....|+..|+.+...+|...... ..+.+ +-+..+++... .+
T Consensus 206 ~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~ 285 (483)
T KOG4341|consen 206 VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED 285 (483)
T ss_pred HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH
Confidence 78888888888888888888864332 12335667777777777532111 11122 22222222111 01
Q ss_pred ---c-CCCCCcceEEecc-cccchhHHHHHHhCCcccceeecccccccc-----ccccccccccEEEeecCCchh-----
Q 039643 230 ---V-ATCPNLKKLHLSE-IVLEDQEFHELISKFPLLEDLSVSSSQPLE-----RVKFSSNLLKRVAFLFCRSLR----- 294 (520)
Q Consensus 230 ---~-~~l~~L~~L~L~~-~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-----~~~~~f~~L~~L~L~~c~~l~----- 294 (520)
+ ..+..|+.+..+. ..+++..+..+.+++++|+.|.+..|..+. ..+...+.|+.|++..|....
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence 1 2366677777764 345555677888999999999999988643 333445689999888875432
Q ss_pred HHhcCCCCccEeEecccCCCCc-ccccccC--CCc---EE-EEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643 295 AVDLDTPNLLSFTFESVRIPTI-SISASHQ--CPW---NV-FFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL 363 (520)
Q Consensus 295 ~lL~~~P~L~~L~l~~~~~~~~-~~~~l~~--~~L---~v-~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~ 363 (520)
.+-.+||.|++|.++.+....- .+..+.. ++. ++ +++..-.. .+..-+.+.+.+.||++.++-
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i------~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI------TDATLEHLSICRNLERIELID 435 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc------hHHHHHHHhhCcccceeeeec
Confidence 5667899999999985532210 0111222 222 21 22222211 233457788899999988775
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.10 E-value=1.7e-06 Score=86.52 Aligned_cols=171 Identities=18% Similarity=0.233 Sum_probs=105.4
Q ss_pred ccCCCCCCCEEEecceecC---hHHHHHHHhcCCCcceeeeeccCCc----ce-------e----ccccccccceEEEec
Q 039643 143 IAINLNSLKNLSLQRVYAN---EQMVHNLIAECCSLEDLSLRYTLGL----KF-------F----SVSKAHKLKNMVIVD 204 (520)
Q Consensus 143 ~~~~l~sLk~L~L~~v~~~---~~~l~~Lls~CP~LE~L~L~~c~~l----~~-------l----~I~~~~~Lk~L~I~~ 204 (520)
...+.|.|++|+|+++-|. ...+..++++|..|++|.|.+|... .. + .+..-++|+.+....
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 3567778999999998883 3567889999999999999999521 00 1 122357888888887
Q ss_pred ccCCCCc------eeeeCCceeEEEecc----c-------cccCCCCCcceEEecccccchh---HHHHHHhCCccccee
Q 039643 205 YSRSSEL------ESIVAPSLQQLTLVR----V-------IVVATCPNLKKLHLSEIVLEDQ---EFHELISKFPLLEDL 264 (520)
Q Consensus 205 ~~~~~~~------~~i~aP~L~~L~l~~----~-------~~~~~l~~L~~L~L~~~~~~~~---~~~~ll~~l~~L~~L 264 (520)
++..... ..-..|.|+.+++.. + ..+..|++|+.|+|.+|.++.. .+...+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 7643211 111346777777641 1 1345677777777776666532 344566667777777
Q ss_pred ecccccccc--------ccccccccccEEEeecCCchh-------HHhcCCCCccEeEecccCC
Q 039643 265 SVSSSQPLE--------RVKFSSNLLKRVAFLFCRSLR-------AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 265 ~L~~~~~l~--------~~~~~f~~L~~L~L~~c~~l~-------~lL~~~P~L~~L~l~~~~~ 313 (520)
.+++|..-. ...-.+++|+.|.+.+|..-. .....-|.|++|.+.+|++
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 777776411 111235567777766643311 2223466777777777665
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.2e-07 Score=88.94 Aligned_cols=186 Identities=21% Similarity=0.266 Sum_probs=127.9
Q ss_pred CCccEEEEeccccCCCc---ccCCC-CCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccce
Q 039643 126 KLLTTLVLNGCRLDEPL---IAINL-NSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKN 199 (520)
Q Consensus 126 ~sL~~L~L~~c~l~~p~---~~~~l-~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~ 199 (520)
+...++++.....+.|. .+.-| ..|+.|+|+...++...++.+++.|..|+.|.|.+..--. ...|..-.+|++
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 34455555554444432 22222 3699999999888888999999999999999999875322 234555789999
Q ss_pred EEEecccCCCC----ceeeeCCceeEEEeccc--------ccc-CCCCCcceEEecccc--cchhHHHHHHhCCccccee
Q 039643 200 MVIVDYSRSSE----LESIVAPSLQQLTLVRV--------IVV-ATCPNLKKLHLSEIV--LEDQEFHELISKFPLLEDL 264 (520)
Q Consensus 200 L~I~~~~~~~~----~~~i~aP~L~~L~l~~~--------~~~-~~l~~L~~L~L~~~~--~~~~~~~~ll~~l~~L~~L 264 (520)
|+++.|..... .+.-++..|..|++.-. +.+ .--++|+.|+|+++. +....+..+...||+|..|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 99999975321 12335677888877511 111 124678888888632 3333466778889999999
Q ss_pred ecccccccccc----ccccccccEEEeecCCchh----HHhcCCCCccEeEeccc
Q 039643 265 SVSSSQPLERV----KFSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFESV 311 (520)
Q Consensus 265 ~L~~~~~l~~~----~~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~~ 311 (520)
+|+.|.++.+. -..|+.|++|.++-|..+- -.+...|.|..|++.|+
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 99998887542 2357789999998887653 33467888888888776
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=7.7e-07 Score=91.12 Aligned_cols=190 Identities=21% Similarity=0.136 Sum_probs=131.9
Q ss_pred cCCCccEEEEeccccCCCc---ccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccCCc---ceeccccccc
Q 039643 124 SAKLLTTLVLNGCRLDEPL---IAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTLGL---KFFSVSKAHK 196 (520)
Q Consensus 124 ~~~sL~~L~L~~c~l~~p~---~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~~l---~~l~I~~~~~ 196 (520)
..+.|++..|.++.+..+. ....||.++.|+|+++-+ .-..+.+++...|+||.|+|+.+... ......-++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3578899999998876533 577899999999999988 55678888999999999999988521 1111112789
Q ss_pred cceEEEecccCCCC---ceeeeCCceeEEEeccc-------cccCCCCCcceEEecccccchhHHHHHHhCCcccceeec
Q 039643 197 LKNMVIVDYSRSSE---LESIVAPSLQQLTLVRV-------IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSV 266 (520)
Q Consensus 197 Lk~L~I~~~~~~~~---~~~i~aP~L~~L~l~~~-------~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L 266 (520)
||+|.+.+|..... .+....|+|+.|.+... .+...+..|++|+|+.+.+-........+.+|.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 99999999985322 23456789998887532 123456779999998766533222345678899999998
Q ss_pred ccccc--c-cc-c-----ccccccccEEEeecCCc-hh---HHhcCCCCccEeEecccCC
Q 039643 267 SSSQP--L-ER-V-----KFSSNLLKRVAFLFCRS-LR---AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 267 ~~~~~--l-~~-~-----~~~f~~L~~L~L~~c~~-l~---~lL~~~P~L~~L~l~~~~~ 313 (520)
+.+.. + .+ . ...|++|++|.+...+- -| .-++..++|+-|.+..+.+
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 88764 1 11 1 24588999999876332 13 3345677777777665543
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.02 E-value=3e-06 Score=84.74 Aligned_cols=191 Identities=18% Similarity=0.277 Sum_probs=130.3
Q ss_pred cCCCccEEEEeccccCC------CcccCCCCCCCEEEecceec---ChHH------HHHHHhcCCCcceeeeeccC-C--
Q 039643 124 SAKLLTTLVLNGCRLDE------PLIAINLNSLKNLSLQRVYA---NEQM------VHNLIAECCSLEDLSLRYTL-G-- 185 (520)
Q Consensus 124 ~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~L~~v~~---~~~~------l~~Lls~CP~LE~L~L~~c~-~-- 185 (520)
...+++.|+|+|+.+.. ......-+.|+.-++++... .+.. +..-+.+||.|+.|+|+++- +
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 35678888888887643 12345566777777776532 1112 23336689999999999983 2
Q ss_pred -ccee--ccccccccceEEEecccCCCC---------------ceeeeCCceeEEEecc-----------ccccCCCCCc
Q 039643 186 -LKFF--SVSKAHKLKNMVIVDYSRSSE---------------LESIVAPSLQQLTLVR-----------VIVVATCPNL 236 (520)
Q Consensus 186 -l~~l--~I~~~~~Lk~L~I~~~~~~~~---------------~~~i~aP~L~~L~l~~-----------~~~~~~l~~L 236 (520)
++.+ -|+.+..|+.|.+.+|..++. ...-+.|.|+.+.... ...+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 2211 144588999999999975431 0123578999999851 1134667999
Q ss_pred ceEEecccccchh---HHHHHHhCCcccceeecccccccc-------ccccccccccEEEeecCCchh--------HHhc
Q 039643 237 KKLHLSEIVLEDQ---EFHELISKFPLLEDLSVSSSQPLE-------RVKFSSNLLKRVAFLFCRSLR--------AVDL 298 (520)
Q Consensus 237 ~~L~L~~~~~~~~---~~~~ll~~l~~L~~L~L~~~~~l~-------~~~~~f~~L~~L~L~~c~~l~--------~lL~ 298 (520)
+++.+..+.+... .+..-+..|++|+.|+|..+..-. ..-..+++|+.|.+++|.--. .+-.
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 9999988766433 344567899999999999887511 122356789999999984311 5557
Q ss_pred CCCCccEeEecccCCC
Q 039643 299 DTPNLLSFTFESVRIP 314 (520)
Q Consensus 299 ~~P~L~~L~l~~~~~~ 314 (520)
..|+|+.+.+.++.+.
T Consensus 268 ~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEIT 283 (382)
T ss_pred cCCCCceeccCcchhH
Confidence 7999999999888654
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.00 E-value=1.6e-07 Score=99.46 Aligned_cols=215 Identities=20% Similarity=0.160 Sum_probs=109.8
Q ss_pred HHHHHHHHHhCCceEEEEEecCCCCCcccccCcccc-cCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHH
Q 039643 88 VDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIY-SAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMV 165 (520)
Q Consensus 88 v~~Wl~~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~-~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l 165 (520)
+.+=+.+| +|.-.|.|+.. ..-++|.++| .+..|-.|+|+++.++. ||....+..|++|.|+++.+..-.+
T Consensus 118 vP~~LE~A--Kn~iVLNLS~N-----~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 118 VPTNLEYA--KNSIVLNLSYN-----NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred cchhhhhh--cCcEEEEcccC-----ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 44444454 34445555443 3446676665 35667777888877754 7777777777777777776533333
Q ss_pred HHHHhcCCCcceeeeeccCC-cc--eecccc-----------------------ccccceEEEecccCCCCceee-eCCc
Q 039643 166 HNLIAECCSLEDLSLRYTLG-LK--FFSVSK-----------------------AHKLKNMVIVDYSRSSELESI-VAPS 218 (520)
Q Consensus 166 ~~Lls~CP~LE~L~L~~c~~-l~--~l~I~~-----------------------~~~Lk~L~I~~~~~~~~~~~i-~aP~ 218 (520)
.++ .+..+|+.|.+++... +. +-++.+ +++|++|.++++....-...+ .=.+
T Consensus 191 rQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~ 269 (1255)
T KOG0444|consen 191 RQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWEN 269 (1255)
T ss_pred hcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhh
Confidence 322 3334444444443311 00 112222 455555555554421000000 0124
Q ss_pred eeEEEecc------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc-cccccc-ccccccEEEeecC
Q 039643 219 LQQLTLVR------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP-LERVKF-SSNLLKRVAFLFC 290 (520)
Q Consensus 219 L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~-l~~~~~-~f~~L~~L~L~~c 290 (520)
|++|+++. +..+..++.|+.|.+.++..+-+.++.-++++.+|+.+...++.. +.|.+. .+..|++|.|..
T Consensus 270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~- 348 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH- 348 (1255)
T ss_pred hhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-
Confidence 44554431 223345556666666555544334444555666666666655543 334443 356677777754
Q ss_pred Cch-h--HHhcCCCCccEeEeccc
Q 039643 291 RSL-R--AVDLDTPNLLSFTFESV 311 (520)
Q Consensus 291 ~~l-~--~lL~~~P~L~~L~l~~~ 311 (520)
+.+ . .-+.-+|.|+.|++..+
T Consensus 349 NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 349 NRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred cceeechhhhhhcCCcceeeccCC
Confidence 332 2 44555777888888766
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.8e-06 Score=87.13 Aligned_cols=161 Identities=18% Similarity=0.171 Sum_probs=111.7
Q ss_pred cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccC--Ccce-ec-cccccccceEEEecccCCCCceeeeCC
Q 039643 142 LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTL--GLKF-FS-VSKAHKLKNMVIVDYSRSSELESIVAP 217 (520)
Q Consensus 142 ~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~--~l~~-l~-I~~~~~Lk~L~I~~~~~~~~~~~i~aP 217 (520)
..-.++..|+...|+++.+.......-...||++.+|+|+.+- +... .. +..+|+|+.|.++.+...... .
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~-----~ 189 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI-----S 189 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc-----c
Confidence 3456889999999998887443433567789999999999872 2221 12 234899999999988642110 0
Q ss_pred ceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccc--c-ccccccccccEEEeecCCchh
Q 039643 218 SLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPL--E-RVKFSSNLLKRVAFLFCRSLR 294 (520)
Q Consensus 218 ~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l--~-~~~~~f~~L~~L~L~~c~~l~ 294 (520)
+. .-..+++|+.|.|..|.++...+...+..+|+|+.|.+..+..+ . .....+..|+.|+|++.....
T Consensus 190 s~---------~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 190 SN---------TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred cc---------chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence 11 11356788888888888887778888889999999999887532 1 112235678888888744332
Q ss_pred ----HHhcCCCCccEeEecccCCCCc
Q 039643 295 ----AVDLDTPNLLSFTFESVRIPTI 316 (520)
Q Consensus 295 ----~lL~~~P~L~~L~l~~~~~~~~ 316 (520)
.....+|.|..|.++.++++.+
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred cccccccccccchhhhhccccCcchh
Confidence 5567788999998888877654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.87 E-value=3.7e-05 Score=86.90 Aligned_cols=197 Identities=14% Similarity=0.142 Sum_probs=102.4
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.+..+|.+... ....+|..+. ++|+.|+|++|.+.. |... +++|++|+|.++.+.. ++.-+ .+.|+
T Consensus 178 ~~~~~L~L~~~-----~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~ 244 (754)
T PRK15370 178 NNKTELRLKIL-----GLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQ 244 (754)
T ss_pred cCceEEEeCCC-----CcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hcccc
Confidence 34566666543 2345666543 578999999987643 4432 4689999999887741 22111 25788
Q ss_pred eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccc--ccc-C-CCCCcceEEecccccchhHHH
Q 039643 177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRV--IVV-A-TCPNLKKLHLSEIVLEDQEFH 252 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~--~~~-~-~l~~L~~L~L~~~~~~~~~~~ 252 (520)
.|+|++|.. ..+.-.-..+|+.|+++++....-...+ .++|++|.+.+. ..+ . -.++|+.|++++|.++. .+.
T Consensus 245 ~L~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~L~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~-LP~ 321 (754)
T PRK15370 245 EMELSINRI-TELPERLPSALQSLDLFHNKISCLPENL-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTA-LPE 321 (754)
T ss_pred EEECcCCcc-CcCChhHhCCCCEEECcCCccCcccccc-CCCCcEEECCCCccccCcccchhhHHHHHhcCCcccc-CCc
Confidence 999888752 2221111357888888876532100011 246777766421 011 0 11246666666555432 111
Q ss_pred HHHhCCcccceeecccccccccccc-ccccccEEEeecCCchhHHh-cCCCCccEeEecccCCCC
Q 039643 253 ELISKFPLLEDLSVSSSQPLERVKF-SSNLLKRVAFLFCRSLRAVD-LDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 253 ~ll~~l~~L~~L~L~~~~~l~~~~~-~f~~L~~L~L~~c~~l~~lL-~~~P~L~~L~l~~~~~~~ 315 (520)
. -.++|+.|.+++|.. ..++. ..++|+.|+++++. +..+- .-.++|+.|+++++.+..
T Consensus 322 ~---l~~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 322 T---LPPGLKTLEAGENAL-TSLPASLPPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNALTN 381 (754)
T ss_pred c---ccccceeccccCCcc-ccCChhhcCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcCCC
Confidence 1 124666776666542 11111 12466777766542 22000 112466777776665443
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.73 E-value=4.3e-06 Score=85.40 Aligned_cols=187 Identities=21% Similarity=0.277 Sum_probs=117.9
Q ss_pred CCccEEEEeccc-cCC---CcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccCCcceec----cccccc
Q 039643 126 KLLTTLVLNGCR-LDE---PLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTLGLKFFS----VSKAHK 196 (520)
Q Consensus 126 ~sL~~L~L~~c~-l~~---p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~----I~~~~~ 196 (520)
.-|+.|.|+||. +.. -....++|+...|.+..|.. ++..+.++-..|+.|+.|.+..|..++... ..++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 478899999983 332 12457899999999998876 888999998999999999999998765432 235899
Q ss_pred cceEEEecccCCCC-c---eeeeCCceeEEEeccccc-----c----CCCCCcceEEecc-cccchhHHHHHHhCCcccc
Q 039643 197 LKNMVIVDYSRSSE-L---ESIVAPSLQQLTLVRVIV-----V----ATCPNLKKLHLSE-IVLEDQEFHELISKFPLLE 262 (520)
Q Consensus 197 Lk~L~I~~~~~~~~-~---~~i~aP~L~~L~l~~~~~-----~----~~l~~L~~L~L~~-~~~~~~~~~~ll~~l~~L~ 262 (520)
|++|.++.|..... . ..-.+.+++.+...+... + ..++.+.++++.. +.+++..+..+-.++..||
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999999973211 1 111222344433332111 1 2334444455433 4455555556666677777
Q ss_pred eeecccccccc-----ccccccccccEEEeecCCchh-----HHhcCCCCccEeEecccC
Q 039643 263 DLSVSSSQPLE-----RVKFSSNLLKRVAFLFCRSLR-----AVDLDTPNLLSFTFESVR 312 (520)
Q Consensus 263 ~L~L~~~~~l~-----~~~~~f~~L~~L~L~~c~~l~-----~lL~~~P~L~~L~l~~~~ 312 (520)
.|..++|..+. ..+-..++|+.|.+.+|..+. .+-.++|.|+.++..++.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 77777776532 222334667777777776543 444667777777766553
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.72 E-value=4.9e-06 Score=92.26 Aligned_cols=214 Identities=20% Similarity=0.209 Sum_probs=121.6
Q ss_pred ccHHHHHHHHHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecC--h
Q 039643 86 SLVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYAN--E 162 (520)
Q Consensus 86 ~~v~~Wl~~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~--~ 162 (520)
..+..|+..+ .+|+.|..... ....+|..++...+|+.|....|.+. .|+...++.+|++|+|..+.+. .
T Consensus 254 ~~lp~wi~~~--~nle~l~~n~N-----~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp 326 (1081)
T KOG0618|consen 254 SNLPEWIGAC--ANLEALNANHN-----RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLP 326 (1081)
T ss_pred hcchHHHHhc--ccceEecccch-----hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccc
Confidence 3455777754 35666666553 24677888888888888888888773 4778888999999999988761 1
Q ss_pred HHHHHHHhcCCC-cceeeeeccCC--cceeccccccccceEEEecccCCCC--ceeeeCCceeEEEecc-------cccc
Q 039643 163 QMVHNLIAECCS-LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSE--LESIVAPSLQQLTLVR-------VIVV 230 (520)
Q Consensus 163 ~~l~~Lls~CP~-LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~--~~~i~aP~L~~L~l~~-------~~~~ 230 (520)
+.+-.. -+. |+.|..+.... .....=...+.|+.|.+.++..... ......++|+.|.+.. ...+
T Consensus 327 ~~~l~v---~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 327 DNFLAV---LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred hHHHhh---hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH
Confidence 111111 111 22222211110 0000000145555666665553211 1223456666666542 1124
Q ss_pred CCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc-ccccccccccEEEeecCCchh--HHh--cCCCCccE
Q 039643 231 ATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLFCRSLR--AVD--LDTPNLLS 305 (520)
Q Consensus 231 ~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~c~~l~--~lL--~~~P~L~~ 305 (520)
.+++.|++|++++|..+. +..-+..++.|++|..+++..+. |.-...++|+.++++. +++. .+. ...|+|+.
T Consensus 404 ~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred hchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccce
Confidence 567778888888877643 33456677778888777766432 3333456777777753 5554 111 22367888
Q ss_pred eEecccC
Q 039643 306 FTFESVR 312 (520)
Q Consensus 306 L~l~~~~ 312 (520)
|+++|+.
T Consensus 481 LdlSGN~ 487 (1081)
T KOG0618|consen 481 LDLSGNT 487 (1081)
T ss_pred eeccCCc
Confidence 8888774
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.72 E-value=0.00011 Score=83.05 Aligned_cols=192 Identities=18% Similarity=0.148 Sum_probs=109.7
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.+++.|.+... ....+|.. .++|++|+|++|.+.. |. ..++|++|+|.++.+. .++.+ .+.|.
T Consensus 222 ~~L~~L~L~~N-----~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~--~Lp~l---p~~L~ 285 (788)
T PRK15387 222 AHITTLVIPDN-----NLTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT--HLPAL---PSGLC 285 (788)
T ss_pred cCCCEEEccCC-----cCCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCchh--hhhhc---hhhcC
Confidence 36788877654 23346643 4789999999987744 33 3579999999888763 23222 25677
Q ss_pred eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEecc--ccccCCC-CCcceEEecccccchhHHHH
Q 039643 177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR--VIVVATC-PNLKKLHLSEIVLEDQEFHE 253 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~--~~~~~~l-~~L~~L~L~~~~~~~~~~~~ 253 (520)
.|++.++. +..+... .++|+.|+++++... .+.-..++|+.|.+.. ...+..+ ++|+.|++++|.++. +..
T Consensus 286 ~L~Ls~N~-Lt~LP~~-p~~L~~LdLS~N~L~--~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~--LP~ 359 (788)
T PRK15387 286 KLWIFGNQ-LTSLPVL-PPGLQELSVSDNQLA--SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS--LPT 359 (788)
T ss_pred EEECcCCc-ccccccc-ccccceeECCCCccc--cCCCCcccccccccccCccccccccccccceEecCCCccCC--CCC
Confidence 88887774 2322222 478888888887632 1111123566665542 1112222 368888888777653 111
Q ss_pred HHhCCcccceeeccccccccccccccccccEEEeecCCchhHHhcCCCCccEeEecccCCCCc
Q 039643 254 LISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTI 316 (520)
Q Consensus 254 ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~~ 316 (520)
..++|+.|.++++. +..++....+|+.|+++++ .+..+-...++|+.|+++++.+..+
T Consensus 360 ---lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~LssI 417 (788)
T PRK15387 360 ---LPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSL 417 (788)
T ss_pred ---CCcccceehhhccc-cccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCcCCCC
Confidence 23466677766654 2222222346777777653 2322222234677777777765543
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.67 E-value=6.3e-06 Score=91.37 Aligned_cols=162 Identities=16% Similarity=0.085 Sum_probs=79.5
Q ss_pred CCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc-eeccccccccceEEEecccCC-CCceeeeCCceeEEEec
Q 039643 148 NSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK-FFSVSKAHKLKNMVIVDYSRS-SELESIVAPSLQQLTLV 225 (520)
Q Consensus 148 ~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~~~~~Lk~L~I~~~~~~-~~~~~i~aP~L~~L~l~ 225 (520)
.+|+.++++++.+. .++..+..|++||.|....+.-.. ...|....+|+.|.+..+... .+.......+|++|.+.
T Consensus 241 ~nl~~~dis~n~l~--~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS--NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhh--cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 46777777777663 344678888999988887765311 123333455555555555421 01111112234444432
Q ss_pred c--------------------------------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccc-
Q 039643 226 R--------------------------------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPL- 272 (520)
Q Consensus 226 ~--------------------------------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l- 272 (520)
. ..+=.+++.|+.|++.+|.+++. +...+.++++||.|+|+++..-
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc-chhhhccccceeeeeeccccccc
Confidence 0 00012344455666666666543 3355666777777777665420
Q ss_pred ccc--ccccccccEEEeecCCc--hhHHhcCCCCccEeEecccC
Q 039643 273 ERV--KFSSNLLKRVAFLFCRS--LRAVDLDTPNLLSFTFESVR 312 (520)
Q Consensus 273 ~~~--~~~f~~L~~L~L~~c~~--l~~lL~~~P~L~~L~l~~~~ 312 (520)
-+. -..+..|+.|.|+|.+- +..-.-+++.|++|..+++.
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc
Confidence 011 11234455555555211 11333445555555555443
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.50 E-value=0.00011 Score=83.11 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=104.1
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.+++.|++... ....+|..++ .+|+.|+|++|.+.. |... .++|+.|+|+++.+.. ++.-+ ...|+
T Consensus 199 ~~L~~L~Ls~N-----~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~--LP~~l--~s~L~ 265 (754)
T PRK15370 199 EQITTLILDNN-----ELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITE--LPERL--PSALQ 265 (754)
T ss_pred cCCcEEEecCC-----CCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccCc--CChhH--hCCCC
Confidence 35777777553 2335776654 478888888886643 3322 3578888888877631 11111 24688
Q ss_pred eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccc--ccc--CCCCCcceEEecccccchhHHH
Q 039643 177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRV--IVV--ATCPNLKKLHLSEIVLEDQEFH 252 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~--~~~--~~l~~L~~L~L~~~~~~~~~~~ 252 (520)
.|+++++. +..+.-.-.++|+.|++++|....-...+ .++|+.|.+... ..+ .-.++|+.|.++++.++. ...
T Consensus 266 ~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~l-p~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~ 342 (754)
T PRK15370 266 SLDLFHNK-ISCLPENLPEELRYLSVYDNSIRTLPAHL-PSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPA 342 (754)
T ss_pred EEECcCCc-cCccccccCCCCcEEECCCCccccCcccc-hhhHHHHHhcCCccccCCccccccceeccccCCcccc-CCh
Confidence 88887653 32221111357888888877532100001 134555555320 011 123567777777666543 111
Q ss_pred HHHhCCcccceeecccccccccccc-ccccccEEEeecCCchhHHhcC-CCCccEeEecccCCCC
Q 039643 253 ELISKFPLLEDLSVSSSQPLERVKF-SSNLLKRVAFLFCRSLRAVDLD-TPNLLSFTFESVRIPT 315 (520)
Q Consensus 253 ~ll~~l~~L~~L~L~~~~~l~~~~~-~f~~L~~L~L~~c~~l~~lL~~-~P~L~~L~l~~~~~~~ 315 (520)
.+ .++|+.|.+++|.. ..++. ..++|++|+|++|. +..+... .+.|+.|+++++.+..
T Consensus 343 ~l---~~sL~~L~Ls~N~L-~~LP~~lp~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 343 SL---PPELQVLDVSKNQI-TVLPETLPPTITTLDVSRNA-LTNLPENLPAALQIMQASRNNLVR 402 (754)
T ss_pred hh---cCcccEEECCCCCC-CcCChhhcCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCCccc
Confidence 11 25778888877653 21111 12467778777643 2211111 1257777777776543
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.46 E-value=4.1e-06 Score=76.05 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=37.3
Q ss_pred ccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeee
Q 039643 121 AIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSL 180 (520)
Q Consensus 121 ~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L 180 (520)
.+|.....+.|.|+.+.+.+ |+..+.+.+|+.|.++++.+.+ ++.-+++.|.|+.|.+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnv 86 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNV 86 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheec
Confidence 56777788888888887744 7777888888888887776521 2222344444444443
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.40 E-value=0.00016 Score=67.30 Aligned_cols=128 Identities=18% Similarity=0.165 Sum_probs=44.3
Q ss_pred cCCCccEEEEeccccCCCcccC-CCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee--cc-ccccccce
Q 039643 124 SAKLLTTLVLNGCRLDEPLIAI-NLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF--SV-SKAHKLKN 199 (520)
Q Consensus 124 ~~~sL~~L~L~~c~l~~p~~~~-~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--~I-~~~~~Lk~ 199 (520)
.+..+++|+|.|+.+......+ .+.+|+.|+|+++.+.. ++ -+++++.|+.|.+.++.- ..+ .+ ..+|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCC-CccccchHHhCCcCCE
Confidence 3456788889888664433444 57888899988887631 11 144568888888887752 111 12 13678888
Q ss_pred EEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh--HHHHHHhCCcccceeecccc
Q 039643 200 MVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ--EFHELISKFPLLEDLSVSSS 269 (520)
Q Consensus 200 L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~l~~L~~L~L~~~ 269 (520)
|.++++.... +.. ...+..+|+|+.|++.+|.++.. .-..++..+|+|+.|+-...
T Consensus 93 L~L~~N~I~~---------l~~-----l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 93 LYLSNNKISD---------LNE-----LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EE-TTS---S---------CCC-----CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EECcCCcCCC---------hHH-----hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 8887765210 000 11346788888888887776542 23356778888888876543
No 27
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=0.00014 Score=81.41 Aligned_cols=143 Identities=20% Similarity=0.228 Sum_probs=97.7
Q ss_pred CCccEEEEeccc-c--CCCc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEE
Q 039643 126 KLLTTLVLNGCR-L--DEPL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMV 201 (520)
Q Consensus 126 ~sL~~L~L~~c~-l--~~p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~ 201 (520)
.+|++|+++|-. + +.|. ...-||+|++|.+.+..+..++|.++..++|+|..|+++++.--.-..|+.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 578888888842 2 1122 34578999999999999966679999999999999999998521112345567777777
Q ss_pred EecccCCCCc---eeeeCCceeEEEecc------c-------cccCCCCCcceEEecccccchhHHHHHHhCCcccceee
Q 039643 202 IVDYSRSSEL---ESIVAPSLQQLTLVR------V-------IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLS 265 (520)
Q Consensus 202 I~~~~~~~~~---~~i~aP~L~~L~l~~------~-------~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~ 265 (520)
+.+-.+.... ..++..+|+.|+++. . ..-..+|+|+.|+.++..++++.+..++..-|+|+...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 6655432211 134567777777752 0 01135888888888887777777777777777777776
Q ss_pred ccc
Q 039643 266 VSS 268 (520)
Q Consensus 266 L~~ 268 (520)
.-.
T Consensus 282 ~~~ 284 (699)
T KOG3665|consen 282 ALD 284 (699)
T ss_pred hhh
Confidence 543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.31 E-value=0.00018 Score=66.89 Aligned_cols=102 Identities=19% Similarity=0.158 Sum_probs=38.1
Q ss_pred CceEEEEEecCCCCCcccccCcccc-cCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643 99 GVKELHIVVESSPHESAYTLPQAIY-SAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED 177 (520)
Q Consensus 99 ~VkeL~L~~~~~~~~~~~~LP~~l~-~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~ 177 (520)
+.++|+|.... ...+ ..+. .+.+|+.|+|++|.+..-..+..++.|++|+++++.+..-. +.+..+||+|+.
T Consensus 20 ~~~~L~L~~n~-----I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQ-----ISTI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--E
T ss_pred ccccccccccc-----cccc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCE
Confidence 46778886641 1122 2343 46899999999998865467788999999999999884211 123356899999
Q ss_pred eeeeccC--Cccee-ccccccccceEEEecccC
Q 039643 178 LSLRYTL--GLKFF-SVSKAHKLKNMVIVDYSR 207 (520)
Q Consensus 178 L~L~~c~--~l~~l-~I~~~~~Lk~L~I~~~~~ 207 (520)
|.+.++. .+..+ .+..+|+|+.|++.++..
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 9999884 22222 344589999999998763
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.24 E-value=7.7e-05 Score=79.91 Aligned_cols=168 Identities=25% Similarity=0.308 Sum_probs=95.9
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEecc-cc-C-C----CcccCCCCCCCEEEeccee-cChHHHHHHH
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGC-RL-D-E----PLIAINLNSLKNLSLQRVY-ANEQMVHNLI 169 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c-~l-~-~----p~~~~~l~sLk~L~L~~v~-~~~~~l~~Ll 169 (520)
.++++|.+...+. ...-.+-.....++.|+.|++++| .. . . ......+++|+.|+|..+. +++..+..+.
T Consensus 188 ~~L~~l~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 188 PLLKRLSLSGCSK--ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred chhhHhhhccccc--CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 5677777765421 111113344556788999998873 21 1 1 1234566888899998887 5778888888
Q ss_pred hcCCCcceeeeeccCCcceec----cccccccceEEEecccCCCC----ceeeeCCceeEEEeccccccCCCCCcceEEe
Q 039643 170 AECCSLEDLSLRYTLGLKFFS----VSKAHKLKNMVIVDYSRSSE----LESIVAPSLQQLTLVRVIVVATCPNLKKLHL 241 (520)
Q Consensus 170 s~CP~LE~L~L~~c~~l~~l~----I~~~~~Lk~L~I~~~~~~~~----~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L 241 (520)
..||.||.|.+.+|..+.... ..++++|+.|++.+|....+ .....+|+|+.|.+.. ...++.++.+.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~---~~~c~~l~~~~l 342 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS---LNGCPSLTDLSL 342 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh---cCCCccHHHHHH
Confidence 889999999888887533211 12378899999988875321 1223466666655421 111444444444
Q ss_pred cccc-cc-hhHHHHHHhCCcccceeeccccc
Q 039643 242 SEIV-LE-DQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 242 ~~~~-~~-~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
.... .. +........++++++.+.+..+.
T Consensus 343 ~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 343 SGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 3211 11 12233344555555555555544
No 30
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.07 E-value=0.00021 Score=77.82 Aligned_cols=166 Identities=22% Similarity=0.175 Sum_probs=101.2
Q ss_pred CceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccC---------------------------------
Q 039643 99 GVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAI--------------------------------- 145 (520)
Q Consensus 99 ~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~--------------------------------- 145 (520)
..+.|.+... +...+.. |-.||..++|++|.|.+|.+....+..
T Consensus 85 kt~~lkl~~~--pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~ 161 (1096)
T KOG1859|consen 85 KTKVLKLLPS--PARDPTE-PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP 161 (1096)
T ss_pred hheeeeeccc--CCCCCCC-CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch
Confidence 3455555443 2223333 889999999999999998663211110
Q ss_pred CCCCCCEEEecceec--ChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecccCC-CCceeeeCCceeEE
Q 039643 146 NLNSLKNLSLQRVYA--NEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRS-SELESIVAPSLQQL 222 (520)
Q Consensus 146 ~l~sLk~L~L~~v~~--~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~-~~~~~i~aP~L~~L 222 (520)
.+..|.+-+...+.+ .|.+++- .|.||.|+|+++...+.-.+..++.||.|+|+++... .+.+.-.+-.|..|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLql----l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQL----LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHH----HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheee
Confidence 111222223333322 2223322 3888999998886433334445899999999988632 12222222347777
Q ss_pred Eecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc
Q 039643 223 TLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP 271 (520)
Q Consensus 223 ~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~ 271 (520)
.+.+ .-+++++.+|..|++++|-+.+..-...+..+..|+.|.|.+++.
T Consensus 238 ~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 238 NLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7763 236788999999999987765543345677788888998888764
No 31
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.98 E-value=0.00065 Score=42.25 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=23.1
Q ss_pred CCCEEEecceec-ChHHHHHHHhcCC
Q 039643 149 SLKNLSLQRVYA-NEQMVHNLIAECC 173 (520)
Q Consensus 149 sLk~L~L~~v~~-~~~~l~~Lls~CP 173 (520)
+||+|+|..|.+ ++..+++++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 699999999999 6778999999998
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.66 E-value=3e-05 Score=78.95 Aligned_cols=198 Identities=20% Similarity=0.097 Sum_probs=118.9
Q ss_pred CcccccCcccccCCCccEEEEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc-eec
Q 039643 113 ESAYTLPQAIYSAKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK-FFS 190 (520)
Q Consensus 113 ~~~~~LP~~l~~~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~ 190 (520)
.....+|+.+.....++.|+.+.+.+ ..|+..+..++|+.|+.+++.+.+ +..-++.|..||+|+..++.-.. +-.
T Consensus 78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N~i~slp~~ 155 (565)
T KOG0472|consen 78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNNQISSLPED 155 (565)
T ss_pred chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee--cCchHHHHhhhhhhhccccccccCchH
Confidence 45667888888888888888888766 447788888899998888876621 11123455667777665553111 011
Q ss_pred ccc-----------------------ccccceEEEecccCC-CCceeeeCCceeEEEec-----cccccCCCCCcceEEe
Q 039643 191 VSK-----------------------AHKLKNMVIVDYSRS-SELESIVAPSLQQLTLV-----RVIVVATCPNLKKLHL 241 (520)
Q Consensus 191 I~~-----------------------~~~Lk~L~I~~~~~~-~~~~~i~aP~L~~L~l~-----~~~~~~~l~~L~~L~L 241 (520)
+.. ..+|+.|+...+... .+.......+|+.|.+. ....|++|..|+++++
T Consensus 156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHV 235 (565)
T ss_pred HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHh
Confidence 111 334444443333211 01001111223333222 2236778888888888
Q ss_pred cccccchhHHHHHHhCCcccceeeccccccc-ccccc-ccccccEEEeecCCc--hhHHhcCCCCccEeEecccCCC
Q 039643 242 SEIVLEDQEFHELISKFPLLEDLSVSSSQPL-ERVKF-SSNLLKRVAFLFCRS--LRAVDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 242 ~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l-~~~~~-~f~~L~~L~L~~c~~--l~~lL~~~P~L~~L~l~~~~~~ 314 (520)
+.+.+. ........+++++..|++..+..- .|.++ ...+|++|+++...- +-.-+.+. .|++|.+.|+++.
T Consensus 236 g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 236 GENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 776653 234456778999999999887742 34444 356799999986332 22556666 7888888888665
No 33
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.54 E-value=2.7e-05 Score=79.26 Aligned_cols=150 Identities=20% Similarity=0.149 Sum_probs=83.3
Q ss_pred ccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceecccccc
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAH 195 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~ 195 (520)
.+|..++.|.+|..|.+.++.+. .|+...++.+|+.|+..++-+ +.++.-+++...|+.|+|.++.-..--.+.++.
T Consensus 151 slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs 228 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEFPGCS 228 (565)
T ss_pred cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCCCccH
Confidence 44554455555555555554332 234444455555555544432 122222455566777777776532222566678
Q ss_pred ccceEEEecccCCC-C-ceeeeCCceeEEEec------cccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecc
Q 039643 196 KLKNMVIVDYSRSS-E-LESIVAPSLQQLTLV------RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVS 267 (520)
Q Consensus 196 ~Lk~L~I~~~~~~~-~-~~~i~aP~L~~L~l~------~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~ 267 (520)
.|+.|.++.+.... + ...-+.+++..|++. .+..+.-+.+|+.|+++++.++. +..-++++ +|+.|.+.
T Consensus 229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFLALE 305 (565)
T ss_pred HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeehhhc
Confidence 88888887765321 1 112256677777764 24455567778888888777654 33345666 77777777
Q ss_pred cccc
Q 039643 268 SSQP 271 (520)
Q Consensus 268 ~~~~ 271 (520)
+++.
T Consensus 306 GNPl 309 (565)
T KOG0472|consen 306 GNPL 309 (565)
T ss_pred CCch
Confidence 7663
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.41 E-value=0.00033 Score=63.87 Aligned_cols=137 Identities=20% Similarity=0.200 Sum_probs=93.9
Q ss_pred cccccCcccccCCCccEEEEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc-ee--
Q 039643 114 SAYTLPQAIYSAKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK-FF-- 189 (520)
Q Consensus 114 ~~~~LP~~l~~~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l-- 189 (520)
....+|+.+..+.+|++|++.++.+ +.|.+...+|.||.|.+..+++. .+++-+.++|.||.|+|.++.--+ .+
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpg 121 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPG 121 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCc
Confidence 4556788888888999999988877 44778888888988888766541 222335667999999988875211 11
Q ss_pred ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccc
Q 039643 190 SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSS 269 (520)
Q Consensus 190 ~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~ 269 (520)
..-.+.+|+-|.++++.+. +- +.+++.+.+|+.|.+..+..-. +.+-++.+..|+.|++.++
T Consensus 122 nff~m~tlralyl~dndfe-----~l-----------p~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 122 NFFYMTTLRALYLGDNDFE-----IL-----------PPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred chhHHHHHHHHHhcCCCcc-----cC-----------ChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccc
Confidence 1112678888888887752 11 3356778888888887665522 3345667788888888776
Q ss_pred c
Q 039643 270 Q 270 (520)
Q Consensus 270 ~ 270 (520)
.
T Consensus 184 r 184 (264)
T KOG0617|consen 184 R 184 (264)
T ss_pred e
Confidence 5
No 35
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.39 E-value=0.0024 Score=68.35 Aligned_cols=155 Identities=26% Similarity=0.328 Sum_probs=85.5
Q ss_pred CCCCCEEEeccee--cChHHHHHHHhcCCCcceeeeeccCCcceec----cccccccceEEEecccCCCCceeeeCCcee
Q 039643 147 LNSLKNLSLQRVY--ANEQMVHNLIAECCSLEDLSLRYTLGLKFFS----VSKAHKLKNMVIVDYSRSSELESIVAPSLQ 220 (520)
Q Consensus 147 l~sLk~L~L~~v~--~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~----I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~ 220 (520)
...++.+.+..+. .+......+...||.|+.|.+.+|..+.... ...++.|+.|+++++...... .+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~ 235 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL----SPLLL 235 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc----chhHh
Confidence 3444555544432 2445566666667888888777776543211 123677777777764210000 00000
Q ss_pred EEEeccccccCCCCCcceEEecccc-cchhHHHHHHhCCcccceeecccccccccc-----ccccccccEEEeecCCchh
Q 039643 221 QLTLVRVIVVATCPNLKKLHLSEIV-LEDQEFHELISKFPLLEDLSVSSSQPLERV-----KFSSNLLKRVAFLFCRSLR 294 (520)
Q Consensus 221 ~L~l~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~-----~~~f~~L~~L~L~~c~~l~ 294 (520)
......+++|+.+++..+. +++..+..+...|++|+.|.+..|..+... ....++|++|+++.|....
T Consensus 236 ------~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 236 ------LLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred ------hhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 0012345667777776544 555556666666777777776666643222 2234567777777765532
Q ss_pred -----HHhcCCCCccEeEeccc
Q 039643 295 -----AVDLDTPNLLSFTFESV 311 (520)
Q Consensus 295 -----~lL~~~P~L~~L~l~~~ 311 (520)
....++|+|++|.+...
T Consensus 310 d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 310 DSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHHHHHHhCcchhhhhhhhc
Confidence 44667888888776544
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.34 E-value=0.00055 Score=67.51 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=72.6
Q ss_pred CCCCCCCEEEecceecC--hHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecccCC-CCceeeeCCceeE
Q 039643 145 INLNSLKNLSLQRVYAN--EQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRS-SELESIVAPSLQQ 221 (520)
Q Consensus 145 ~~l~sLk~L~L~~v~~~--~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~-~~~~~i~aP~L~~ 221 (520)
..+..|++|+|+++.+. ++++ .-.|.++.|+++++.-...-++..+++|..|+++++... ........-|.++
T Consensus 281 dTWq~LtelDLS~N~I~~iDESv----KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESV----KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchhhhhhhh----hhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 34567777777777652 2222 223777777777765333223444677777777776521 0111222345555
Q ss_pred EEecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc
Q 039643 222 LTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP 271 (520)
Q Consensus 222 L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~ 271 (520)
|.+.+ ..++..+-+|+.|++.+|++..-.-.+-++++|.|+.|.|.+++.
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 55542 123455667788888877776544445678888888888887763
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.25 E-value=0.0016 Score=49.17 Aligned_cols=34 Identities=32% Similarity=0.322 Sum_probs=16.8
Q ss_pred CccEEEEeccccCC-C-cccCCCCCCCEEEecceec
Q 039643 127 LLTTLVLNGCRLDE-P-LIAINLNSLKNLSLQRVYA 160 (520)
Q Consensus 127 sL~~L~L~~c~l~~-p-~~~~~l~sLk~L~L~~v~~ 160 (520)
+|++|.|++|.+.. | ..+.++++|++|+++++.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l 37 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL 37 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc
Confidence 45555555554422 2 2344555555555555443
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.20 E-value=0.0033 Score=70.70 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=61.9
Q ss_pred ccccceEEEecccCCCCc---eeeeCCceeEEEecc-----ccccCCCCCcceEEecccccch-hHHHHHHhCCccccee
Q 039643 194 AHKLKNMVIVDYSRSSEL---ESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLED-QEFHELISKFPLLEDL 264 (520)
Q Consensus 194 ~~~Lk~L~I~~~~~~~~~---~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~-~~~~~ll~~l~~L~~L 264 (520)
+|+|++|.|.+-.+..+. ..-+-|||.+|++++ ..++++++||+.|.+.+-.+.. ..+..++ ++++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCee
Confidence 566666666654432111 122445555555542 1245677777777776544432 2233433 68888888
Q ss_pred ecccccccc---------ccccccccccEEEeecCCc----hhHHhcCCCCccEeEec
Q 039643 265 SVSSSQPLE---------RVKFSSNLLKRVAFLFCRS----LRAVDLDTPNLLSFTFE 309 (520)
Q Consensus 265 ~L~~~~~l~---------~~~~~f~~L~~L~L~~c~~----l~~lL~~~P~L~~L~l~ 309 (520)
+++...... ..+...++|+.|+.++-.- +..++..-|+|+....-
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 887643210 1223356777776665111 22566677777766644
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.93 E-value=0.0065 Score=60.14 Aligned_cols=149 Identities=16% Similarity=0.169 Sum_probs=78.4
Q ss_pred HHHHHHhcCCCcceeeeeccCC------cc----eeccccccccceEEEecccCC-CCceeeeCCceeEEEecc------
Q 039643 164 MVHNLIAECCSLEDLSLRYTLG------LK----FFSVSKAHKLKNMVIVDYSRS-SELESIVAPSLQQLTLVR------ 226 (520)
Q Consensus 164 ~l~~Lls~CP~LE~L~L~~c~~------l~----~l~I~~~~~Lk~L~I~~~~~~-~~~~~i~aP~L~~L~l~~------ 226 (520)
++.+++.-|..|..|.++...+ +. ++.+....+|+.+.++.|.-. .-.++..-|.|+++....
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~ 252 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDV 252 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccc
Confidence 4556666667777776666532 11 122333567777777776521 112334456666665520
Q ss_pred ----------------------c--cccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccccc-ccccc
Q 039643 227 ----------------------V--IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVK-FSSNL 281 (520)
Q Consensus 227 ----------------------~--~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~-~~f~~ 281 (520)
+ ..+..-..|+++++++|.+++ +..-..-.|.++.|.++.+....-.. ....+
T Consensus 253 ~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~ 330 (490)
T KOG1259|consen 253 PSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQ 330 (490)
T ss_pred ccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhccc
Confidence 0 011223357788888776654 22334456888888888766422111 12456
Q ss_pred ccEEEeecCCchh--HHhcCCCCccEeEecccCCC
Q 039643 282 LKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 282 L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~ 314 (520)
|.+|+|++..-.. .+-...-|.++|.+.++.+.
T Consensus 331 L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 331 LQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred ceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence 7777776522111 22233445667777666444
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.90 E-value=0.0024 Score=65.31 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=31.3
Q ss_pred ccccCcccc-cCCCccEEEEeccccCC--CcccCCCCCCCEEEecc-eec
Q 039643 115 AYTLPQAIY-SAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQR-VYA 160 (520)
Q Consensus 115 ~~~LP~~l~-~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~-v~~ 160 (520)
.-.+|+..| ..++|+.|+|+.+.+.. |..+.++++|.+|.+-+ +++
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 445676555 46888888888876533 66677888888777765 444
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.81 E-value=0.01 Score=44.70 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=42.7
Q ss_pred CceEEEEEecCCCCCcccccCccc-ccCCCccEEEEeccccCC--CcccCCCCCCCEEEeccee
Q 039643 99 GVKELHIVVESSPHESAYTLPQAI-YSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVY 159 (520)
Q Consensus 99 ~VkeL~L~~~~~~~~~~~~LP~~l-~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~ 159 (520)
++++|++... ....+|... ..+++|++|++++|.+.. +..+.++++|+.|+++++.
T Consensus 2 ~L~~L~l~~n-----~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-----KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-----TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-----CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5677777653 345677644 458999999999987744 4567899999999998875
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.69 E-value=0.0049 Score=71.14 Aligned_cols=100 Identities=22% Similarity=0.055 Sum_probs=51.0
Q ss_pred CCCccEEEEeccc--c-CC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc-ceeccccccccce
Q 039643 125 AKLLTTLVLNGCR--L-DE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL-KFFSVSKAHKLKN 199 (520)
Q Consensus 125 ~~sL~~L~L~~c~--l-~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l-~~l~I~~~~~Lk~ 199 (520)
|+.|++|-+.++. + .. +..+..+|.|++|+|+++. ....++.-|+..=+|++|+++++.-- -+..+..+.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 4456666666652 2 22 2235667777777777643 22344555666666777777665411 0223334556666
Q ss_pred EEEecccCC--CCceeeeCCceeEEEec
Q 039643 200 MVIVDYSRS--SELESIVAPSLQQLTLV 225 (520)
Q Consensus 200 L~I~~~~~~--~~~~~i~aP~L~~L~l~ 225 (520)
|++...... .+.+.-..++|++|.+.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred eccccccccccccchhhhcccccEEEee
Confidence 666554421 11111124566666654
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.32 E-value=0.0052 Score=70.94 Aligned_cols=196 Identities=21% Similarity=0.189 Sum_probs=110.0
Q ss_pred cccCccccc-CCCccEEEEecc-cc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee-cc
Q 039643 116 YTLPQAIYS-AKLLTTLVLNGC-RL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF-SV 191 (520)
Q Consensus 116 ~~LP~~l~~-~~sL~~L~L~~c-~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l-~I 191 (520)
..++..+|. ++.|++|+|++| .+ ..|...+.+-+||.|+|.+..+. .++.-+.....|.+|++..+..+... .+
T Consensus 560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccch
Confidence 345555454 799999999987 44 44778888999999999887763 23333444578889998887654332 22
Q ss_pred c-cccccceEEEecccCCCCc-ee---eeCCceeEEEecc--c---cccCCCCCcceEEeccc--ccchhHHHHHHhCCc
Q 039643 192 S-KAHKLKNMVIVDYSRSSEL-ES---IVAPSLQQLTLVR--V---IVVATCPNLKKLHLSEI--VLEDQEFHELISKFP 259 (520)
Q Consensus 192 ~-~~~~Lk~L~I~~~~~~~~~-~~---i~aP~L~~L~l~~--~---~~~~~l~~L~~L~L~~~--~~~~~~~~~ll~~l~ 259 (520)
. .+++||+|.+......... .. ....+|+.|+... . ..+..+..|..+...-. ..........+..+.
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~ 717 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLG 717 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccccc
Confidence 2 2788999988776521111 11 1223333333321 1 11222333332221110 000011223456788
Q ss_pred ccceeecccccccccc--------ccc-cccccEEEeecCCchh--HHhcCCCCccEeEecccCC
Q 039643 260 LLEDLSVSSSQPLERV--------KFS-SNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 260 ~L~~L~L~~~~~l~~~--------~~~-f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~ 313 (520)
+|+.|++..|...+.. ... |++|..+.+..|.... ....-.|+|++|.+..++.
T Consensus 718 ~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 718 NLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred CcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence 8888888887753211 111 5566666665665443 3335678899998887754
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.03 E-value=0.015 Score=60.99 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=52.2
Q ss_pred ccccCCCccEEEEecccc-CCCcccCCCC-CCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccc-ccccc
Q 039643 121 AIYSAKLLTTLVLNGCRL-DEPLIAINLN-SLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVS-KAHKL 197 (520)
Q Consensus 121 ~l~~~~sL~~L~L~~c~l-~~p~~~~~l~-sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~-~~~~L 197 (520)
.+...+.++.|.+.++.+ +.++....+. +|+.|++.++.+.. +..-+..+|.|+.|++.++......... ..++|
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence 333446678888887655 3444444453 78888888776522 2133567788888888887632211111 36788
Q ss_pred ceEEEecccC
Q 039643 198 KNMVIVDYSR 207 (520)
Q Consensus 198 k~L~I~~~~~ 207 (520)
+.|+++++..
T Consensus 189 ~~L~ls~N~i 198 (394)
T COG4886 189 NNLDLSGNKI 198 (394)
T ss_pred hheeccCCcc
Confidence 8888887763
No 45
>PLN03150 hypothetical protein; Provisional
Probab=94.59 E-value=0.035 Score=62.21 Aligned_cols=80 Identities=20% Similarity=0.131 Sum_probs=61.3
Q ss_pred CccEEEEeccccC--CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccccceEEE
Q 039643 127 LLTTLVLNGCRLD--EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVI 202 (520)
Q Consensus 127 sL~~L~L~~c~l~--~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I 202 (520)
.++.|+|+++.+. .|..+..+++|+.|+|+++.+.+ .++..+..++.|+.|+|+++.. ...-.+.++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3788899988663 36778899999999999988743 3444578899999999999853 22334556899999999
Q ss_pred ecccC
Q 039643 203 VDYSR 207 (520)
Q Consensus 203 ~~~~~ 207 (520)
+++..
T Consensus 498 s~N~l 502 (623)
T PLN03150 498 NGNSL 502 (623)
T ss_pred cCCcc
Confidence 98864
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.022 Score=56.50 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=107.3
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCc--ccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPL--IAINLNSLKNLSLQRVYANEQMVHNLIAECCSL 175 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~--~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L 175 (520)
..|++++|.-... ...-.+-..+-.++.|++|+|+.+.+..+- -.....+|++|.|.+..++-......+...|.+
T Consensus 71 ~~v~elDL~~N~i--SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLI--SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchh--ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 5799999976421 111222233345678999999998774311 124667999999998887666777788889999
Q ss_pred ceeeeeccCC----cceecccc-ccccceEEEecccCC----CCceeeeCCceeEEEec-c-------ccccCCCCCcce
Q 039643 176 EDLSLRYTLG----LKFFSVSK-AHKLKNMVIVDYSRS----SELESIVAPSLQQLTLV-R-------VIVVATCPNLKK 238 (520)
Q Consensus 176 E~L~L~~c~~----l~~l~I~~-~~~Lk~L~I~~~~~~----~~~~~i~aP~L~~L~l~-~-------~~~~~~l~~L~~ 238 (520)
++|.++.++. ...-++.. ++.+++|....|... .....---||+..+.+. + ..+.+.+|.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9998887731 11111111 467777777777531 00111224666665542 1 223456677777
Q ss_pred EEecccccchhHHHHHHhCCcccceeeccccccc
Q 039643 239 LHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPL 272 (520)
Q Consensus 239 L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l 272 (520)
|+|..+.++.=.-..-+.+++.|..|.+...+..
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 7776666643223355778888888888887753
No 47
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=94.32 E-value=0.025 Score=44.32 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=33.3
Q ss_pred HHHHHHHHhccccccceEEEecccc---ccccccccccccccCCC
Q 039643 343 YLKLKEFLGASNQIENLLINLRSVN---IRQMPFDLEEFKNRSPS 384 (520)
Q Consensus 343 ~~~~~~~l~n~~~Le~L~i~~~~~~---~~~i~~~L~~~p~asp~ 384 (520)
.++++||++|++.||.|+|...... ...+..+|..+|++|+.
T Consensus 22 ~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~ 66 (72)
T smart00579 22 KELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSS 66 (72)
T ss_pred HHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCc
Confidence 7999999999999999999985322 13456678888888876
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.31 E-value=0.021 Score=55.93 Aligned_cols=219 Identities=15% Similarity=0.071 Sum_probs=109.1
Q ss_pred cHHHHHH-HHHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-----C-------CcccCCCCCCCEE
Q 039643 87 LVDKWIG-LAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-----E-------PLIAINLNSLKNL 153 (520)
Q Consensus 87 ~v~~Wl~-~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-----~-------p~~~~~l~sLk~L 153 (520)
++...+. .++...+.+++|+....+....-.+...+..-++|+..+++..... . .+....+|.|++.
T Consensus 18 Dvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v 97 (388)
T COG5238 18 DVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKV 97 (388)
T ss_pred hhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceee
Confidence 3444443 2334667777776542111111233344444566666666652110 0 1234567777777
Q ss_pred Eecceec---ChHHHHHHHhcCCCcceeeeeccCCc--ceeccccccccceEEEecccCCCCceeeeCCceeEEEec---
Q 039643 154 SLQRVYA---NEQMVHNLIAECCSLEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLV--- 225 (520)
Q Consensus 154 ~L~~v~~---~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~--- 225 (520)
+|+++.| ....+..+|+.-..|++|.+++|... ..-+|. ..|..|. . ..-.-+.|.|+++...
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la--~-----nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLA--Y-----NKKAADKPKLEVVICGRNR 168 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHH--H-----HhhhccCCCceEEEeccch
Confidence 7777766 23456667777777888877777410 001111 0000000 0 0012234555554442
Q ss_pred ---cc-----cccCCCCCcceEEecccccchhHHH----HHHhCCcccceeeccccccc-c------ccccccccccEEE
Q 039643 226 ---RV-----IVVATCPNLKKLHLSEIVLEDQEFH----ELISKFPLLEDLSVSSSQPL-E------RVKFSSNLLKRVA 286 (520)
Q Consensus 226 ---~~-----~~~~~l~~L~~L~L~~~~~~~~~~~----~ll~~l~~L~~L~L~~~~~l-~------~~~~~f~~L~~L~ 286 (520)
++ ..+.+-.+|+.+.+..|.+....+. .-+..+.+|+.|+|..+..- . ..-...+.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 00 0122235777788877666544222 22456778888888776641 1 1112334578888
Q ss_pred eecCCch----hHHh-----cCCCCccEeEecccCCC
Q 039643 287 FLFCRSL----RAVD-----LDTPNLLSFTFESVRIP 314 (520)
Q Consensus 287 L~~c~~l----~~lL-----~~~P~L~~L~l~~~~~~ 314 (520)
+..|--. ..++ .-.|+|..|....+.+.
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 8776321 1222 24678887777665443
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.03 E-value=0.057 Score=38.06 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=17.4
Q ss_pred CccEEEEeccccCC-CcccCCCCCCCEEEecceec
Q 039643 127 LLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYA 160 (520)
Q Consensus 127 sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~ 160 (520)
+|++|+|+++.+.. |+.+.++++|+.|+++++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 45666666655432 33355566666666655554
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.03 E-value=0.14 Score=53.79 Aligned_cols=133 Identities=12% Similarity=0.146 Sum_probs=70.2
Q ss_pred CCCCCCCEEEecceecChHHHHHHHhcCC-CcceeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEE
Q 039643 145 INLNSLKNLSLQRVYANEQMVHNLIAECC-SLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLT 223 (520)
Q Consensus 145 ~~l~sLk~L~L~~v~~~~~~l~~Lls~CP-~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~ 223 (520)
..++.++.|++++|.+.. ++ ..| .|+.|.+.+|..+..+.-.-.++|++|.+.+|... . .-.++|++|.
T Consensus 49 ~~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L-~---sLP~sLe~L~ 118 (426)
T PRK15386 49 EEARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEI-S---GLPESVRSLE 118 (426)
T ss_pred HHhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccc-c---ccccccceEE
Confidence 345778888888775421 11 233 48888888887654432111357888888877421 1 1124677776
Q ss_pred ecc--ccccCCCC-CcceEEecccccchhHHHHHHhCC-cccceeeccccccccccccccccccEEEeec
Q 039643 224 LVR--VIVVATCP-NLKKLHLSEIVLEDQEFHELISKF-PLLEDLSVSSSQPLERVKFSSNLLKRVAFLF 289 (520)
Q Consensus 224 l~~--~~~~~~l~-~L~~L~L~~~~~~~~~~~~ll~~l-~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~ 289 (520)
+.. ...+..+| +|++|.+..+.... ...+-..+ ++|+.|.+++|......+....+|++|.++.
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred eCCCCCcccccCcchHhheecccccccc--ccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 642 12344443 57777664321100 00000112 4688888877765321111224677777754
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.02 E-value=0.036 Score=58.17 Aligned_cols=101 Identities=21% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCC-CccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAK-LLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL 175 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~-sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L 175 (520)
..++.|.+... ....+|+.....+ +|+.|+++++.+.. |.....++.|+.|.+..+.+. .+.......+.|
T Consensus 116 ~~l~~L~l~~n-----~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L 188 (394)
T COG4886 116 TNLTSLDLDNN-----NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNL 188 (394)
T ss_pred cceeEEecCCc-----ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh--hhhhhhhhhhhh
Confidence 45666766553 3567788777774 99999999987754 456789999999999999873 233344467999
Q ss_pred ceeeeeccCCcceec--cccccccceEEEeccc
Q 039643 176 EDLSLRYTLGLKFFS--VSKAHKLKNMVIVDYS 206 (520)
Q Consensus 176 E~L~L~~c~~l~~l~--I~~~~~Lk~L~I~~~~ 206 (520)
+.|+++++.- ..+. +.....|++|.+.++.
T Consensus 189 ~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 189 NNLDLSGNKI-SDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hheeccCCcc-ccCchhhhhhhhhhhhhhcCCc
Confidence 9999999862 2221 2224458888888874
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=0.066 Score=53.25 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=110.3
Q ss_pred CcccccCCCccEEEEeccccCC----CcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccCC---cceec
Q 039643 119 PQAIYSAKLLTTLVLNGCRLDE----PLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTLG---LKFFS 190 (520)
Q Consensus 119 P~~l~~~~sL~~L~L~~c~l~~----p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~~---l~~l~ 190 (520)
|.++++.+-+..|.|.+|.++. .........++.|+|.++.+ +-..+..++...|.|+.|+|+.+.- +..+.
T Consensus 38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp 117 (418)
T KOG2982|consen 38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP 117 (418)
T ss_pred eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence 4455555666777788876643 12234567889999999988 5567888999999999999987642 22232
Q ss_pred cccccccceEEEecccCCC---CceeeeCCceeEEEecc----ccc-----cCC-CCCcceEEecccccc-hhHHHHHHh
Q 039643 191 VSKAHKLKNMVIVDYSRSS---ELESIVAPSLQQLTLVR----VIV-----VAT-CPNLKKLHLSEIVLE-DQEFHELIS 256 (520)
Q Consensus 191 I~~~~~Lk~L~I~~~~~~~---~~~~i~aP~L~~L~l~~----~~~-----~~~-l~~L~~L~L~~~~~~-~~~~~~ll~ 256 (520)
.. ..+|+.|.+.+.+..- ....-+.|.++.|.++. ... ++. -+.+.++....|... .....++..
T Consensus 118 ~p-~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 118 LP-LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred cc-ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 22 5688888888776321 11122344444443320 000 000 012222222211110 012335666
Q ss_pred CCcccceeeccccccc--c--ccccccccccEEEeecCCc-hh---HHhcCCCCccEeEecccCCC
Q 039643 257 KFPLLEDLSVSSSQPL--E--RVKFSSNLLKRVAFLFCRS-LR---AVDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 257 ~l~~L~~L~L~~~~~l--~--~~~~~f~~L~~L~L~~c~~-l~---~lL~~~P~L~~L~l~~~~~~ 314 (520)
-+|++..+-++.|+.- . .....|+.+..|.|+.... .| .-+...|.|..|.+..+++.
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 7888888888888641 1 1122344455555554211 22 56678899988888877554
No 53
>PLN03150 hypothetical protein; Provisional
Probab=93.23 E-value=0.077 Score=59.44 Aligned_cols=106 Identities=13% Similarity=0.043 Sum_probs=71.7
Q ss_pred CCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceeccccccccceEEEecccCCCCceeeeCCceeEEEecc
Q 039643 149 SLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR 226 (520)
Q Consensus 149 sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~ 226 (520)
.++.|+|.++.+.+ .++.-+..++.|+.|+|+++... .+-.+..+++|+.|+++++..... .
T Consensus 419 ~v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~---------------i 482 (623)
T PLN03150 419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS---------------I 482 (623)
T ss_pred EEEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC---------------C
Confidence 47889999887742 34445788999999999998632 222456689999999999874210 1
Q ss_pred ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 227 VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 227 ~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
+..+.++++|+.|+|++|.+++..+..+.....++..+.+.++.
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 23467889999999998888765444433333445555555543
No 54
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=93.16 E-value=0.089 Score=38.35 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=22.6
Q ss_pred cccccChhhHHHHHHHHHhccccccceEEE
Q 039643 333 EHDVGDIDNWYLKLKEFLGASNQIENLLIN 362 (520)
Q Consensus 333 ~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~ 362 (520)
.|+.|... ..++++|+++|+++||+|+|.
T Consensus 22 ~~f~g~~~-e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 22 KGFRGEEN-ELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred EeeeCcHH-HHHHHHHHHhhhhhhcEEEEE
Confidence 34444432 279999999999999999986
No 55
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=0.025 Score=53.13 Aligned_cols=92 Identities=18% Similarity=0.143 Sum_probs=62.8
Q ss_pred ccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccCCccee--
Q 039643 115 AYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTLGLKFF-- 189 (520)
Q Consensus 115 ~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~~l~~l-- 189 (520)
.+.+|-.-..--.++.++-+++.+.- -..+.++++++.|.+.+|.. ++..+..+-...|+||.|+|++|..++.-
T Consensus 90 ~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 90 YFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred eecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence 34666554433456777777754321 23567888999999999875 88888888777899999999999765432
Q ss_pred -ccccccccceEEEeccc
Q 039643 190 -SVSKAHKLKNMVIVDYS 206 (520)
Q Consensus 190 -~I~~~~~Lk~L~I~~~~ 206 (520)
.+..+++|++|.+.+-.
T Consensus 170 ~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHhhhhHHHHhcCch
Confidence 23346777777776543
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.82 E-value=0.05 Score=53.04 Aligned_cols=104 Identities=21% Similarity=0.126 Sum_probs=61.1
Q ss_pred ceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCccee
Q 039643 100 VKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDL 178 (520)
Q Consensus 100 VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L 178 (520)
|+++.++... .....+....-....|+.|.+.++.+.....+..+|+||+|.++.+.+ ....+.-++..||+|.+|
T Consensus 20 v~~l~lD~~~---s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l 96 (260)
T KOG2739|consen 20 VDELFLDNAR---SGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL 96 (260)
T ss_pred hhhhhcchhh---hcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEE
Confidence 4555555421 112233333334556777777777665445667788999999988855 334566667778888888
Q ss_pred eeeccCC--cceec-cccccccceEEEeccc
Q 039643 179 SLRYTLG--LKFFS-VSKAHKLKNMVIVDYS 206 (520)
Q Consensus 179 ~L~~c~~--l~~l~-I~~~~~Lk~L~I~~~~ 206 (520)
+++++.. +..+. +..+++|+.|++..|.
T Consensus 97 ~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 97 NLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred eecCCccccccccchhhhhcchhhhhcccCC
Confidence 8888752 11111 1124556666666654
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.26 E-value=0.15 Score=50.17 Aligned_cols=187 Identities=13% Similarity=0.172 Sum_probs=104.5
Q ss_pred cCCCccEEEEeccccCC------CcccCCCCCCCEEEecceec---ChHH------HHHHHhcCCCcceeeeeccC-Ccc
Q 039643 124 SAKLLTTLVLNGCRLDE------PLIAINLNSLKNLSLQRVYA---NEQM------VHNLIAECCSLEDLSLRYTL-GLK 187 (520)
Q Consensus 124 ~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~L~~v~~---~~~~------l~~Lls~CP~LE~L~L~~c~-~l~ 187 (520)
...+++.++|+|+.+.. .....+-.+|+...+++... .+.. +-..+..||.|+..+|+++- +.+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 36789999999987643 12344556777777765532 1111 22335689999999999884 322
Q ss_pred e---e--ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch---hHHHHHHhCCc
Q 039643 188 F---F--SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED---QEFHELISKFP 259 (520)
Q Consensus 188 ~---l--~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~---~~~~~ll~~l~ 259 (520)
. + -|+....|+.|.+.+|..++..-.--+..|.+|.+. ....+-|.|+......|.+.. ......++.-.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n--KKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN--KKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH--hhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 1 1 255578899999998874321100001123332221 123567888888776655432 22334555557
Q ss_pred ccceeecccccccccccc---------ccccccEEEeecCCc-------hhHHhcCCCCccEeEecccCC
Q 039643 260 LLEDLSVSSSQPLERVKF---------SSNLLKRVAFLFCRS-------LRAVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 260 ~L~~L~L~~~~~l~~~~~---------~f~~L~~L~L~~c~~-------l~~lL~~~P~L~~L~l~~~~~ 313 (520)
+|+.+.+..+.. .|.|+ ...+|+.|+|....- +...+...|.|..|.+.+|-+
T Consensus 186 ~lk~vki~qNgI-rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 186 NLKEVKIQQNGI-RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred CceeEEeeecCc-CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 888888877652 22221 124566666654211 114445566666666655533
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.96 E-value=0.048 Score=53.16 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=8.3
Q ss_pred ccccceEEEeccc
Q 039643 194 AHKLKNMVIVDYS 206 (520)
Q Consensus 194 ~~~Lk~L~I~~~~ 206 (520)
+|+||+|.++.++
T Consensus 64 Lp~LkkL~lsdn~ 76 (260)
T KOG2739|consen 64 LPKLKKLELSDNY 76 (260)
T ss_pred cchhhhhcccCCc
Confidence 5666666666663
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=0.023 Score=55.85 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=49.1
Q ss_pred CCceeEEEec-----cccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccccccccccccEEEeecC
Q 039643 216 APSLQQLTLV-----RVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFC 290 (520)
Q Consensus 216 aP~L~~L~l~-----~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c 290 (520)
.|.|+.|.++ ....+..|.+|++|+|.-|.+.+-.-...+.++|+|+.|-|..++-....|
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag-------------- 105 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG-------------- 105 (388)
T ss_pred cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc--------------
Confidence 4555555543 122457788999999987766553344567889999999887755111100
Q ss_pred Cchh-HHhcCCCCccEeEe
Q 039643 291 RSLR-AVDLDTPNLLSFTF 308 (520)
Q Consensus 291 ~~l~-~lL~~~P~L~~L~l 308 (520)
.+.. ..++.+|||++|+=
T Consensus 106 ~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 106 QNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhHHHHHHHHcccchhccC
Confidence 1222 56777888888764
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=91.18 E-value=0.18 Score=35.44 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=24.6
Q ss_pred CCCCEEEecceecChHHHHHHHhcCCCcceeeeeccC
Q 039643 148 NSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTL 184 (520)
Q Consensus 148 ~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~ 184 (520)
++|++|+|.++.+.+ ++..++.||.|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 578888888888742 44446788888888888874
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.02 E-value=0.27 Score=46.40 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=45.3
Q ss_pred CCccEEEEeccccCCCcccCCCCCCCEEEecceecC--hHHHHHHHhcCCCcceeeeeccCC--ccee-ccccccccceE
Q 039643 126 KLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYAN--EQMVHNLIAECCSLEDLSLRYTLG--LKFF-SVSKAHKLKNM 200 (520)
Q Consensus 126 ~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~--~~~l~~Lls~CP~LE~L~L~~c~~--l~~l-~I~~~~~Lk~L 200 (520)
.....++|+.+.+..-..+..++.|.+|.|..++++ +..+.. -.|+|..|.|.+++- +..+ ....+|+|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345666777665433345667777777777777662 223332 247777777777642 1111 12237788888
Q ss_pred EEeccc
Q 039643 201 VIVDYS 206 (520)
Q Consensus 201 ~I~~~~ 206 (520)
.+.++.
T Consensus 119 tll~Np 124 (233)
T KOG1644|consen 119 TLLGNP 124 (233)
T ss_pred eecCCc
Confidence 777765
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.84 E-value=0.44 Score=50.21 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=59.8
Q ss_pred CCCccEEEEeccccCCCcccCCCC-CCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEe
Q 039643 125 AKLLTTLVLNGCRLDEPLIAINLN-SLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIV 203 (520)
Q Consensus 125 ~~sL~~L~L~~c~l~~p~~~~~l~-sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~ 203 (520)
|..+..|++++|.+..-+ .+| +|++|.+.+|.-- ..++..+ .+.|+.|.+.+|..+..+ .++|+.|.+.
T Consensus 51 ~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sL----P~sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGL----PESVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccc----ccccceEEeC
Confidence 455566666665443211 222 4666666554320 0111111 246777777766544322 2466666665
Q ss_pred cccCCCCceeeeCCceeEEEecc--c---cccC-CC-CCcceEEecccccchhHHHHHHhCC-cccceeecccc
Q 039643 204 DYSRSSELESIVAPSLQQLTLVR--V---IVVA-TC-PNLKKLHLSEIVLEDQEFHELISKF-PLLEDLSVSSS 269 (520)
Q Consensus 204 ~~~~~~~~~~i~aP~L~~L~l~~--~---~~~~-~l-~~L~~L~L~~~~~~~~~~~~ll~~l-~~L~~L~L~~~ 269 (520)
.... ..+..--++|+.|.+.. + ..+. .+ ++|++|.+.++.... +...+ .+|+.|+++.+
T Consensus 121 ~n~~--~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-----LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 121 GSAT--DSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-----LPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCC--cccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-----CcccccccCcEEEeccc
Confidence 4321 11111224566666531 0 0111 12 468888887654321 11122 47888888664
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=0.16 Score=47.92 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=30.9
Q ss_pred HhCCcccceeeccccccc-----cccccccccccEEEeecCCchh----HHhcCCCCccEeEecc
Q 039643 255 ISKFPLLEDLSVSSSQPL-----ERVKFSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFES 310 (520)
Q Consensus 255 l~~l~~L~~L~L~~~~~l-----~~~~~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~ 310 (520)
+.+++.++.|.+.+|..+ +.++..+++|+.|+|++|...+ ..|..++||+.|.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 445666666666665543 2233345566666666665543 4445566666666543
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.20 E-value=1.2 Score=42.18 Aligned_cols=60 Identities=30% Similarity=0.279 Sum_probs=43.8
Q ss_pred cCCCccEEEEecccc-CC-CcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccC
Q 039643 124 SAKLLTTLVLNGCRL-DE-PLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTL 184 (520)
Q Consensus 124 ~~~sL~~L~L~~c~l-~~-p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~ 184 (520)
..+.|..|.|.++.+ .+ |.-..-+|+|++|.|.++.+ .-+++.. +.+||.|++|++.++.
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence 357888999998765 33 33445678899999998876 3344444 4679999999998875
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.44 E-value=0.23 Score=49.15 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=28.2
Q ss_pred CCCccEEEEeccccCCCcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeecc
Q 039643 125 AKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYT 183 (520)
Q Consensus 125 ~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c 183 (520)
++.|++|.|+-+.+..-..+..+.+||.|+|..+.+ +-+.+. -+-+.|+|..|-|..+
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELE-YLKNLPSLRTLWLDEN 98 (388)
T ss_pred cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHH-HHhcCchhhhHhhccC
Confidence 345555555555443323445556666666655554 212221 1345566665555544
No 66
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=79.56 E-value=0.67 Score=49.19 Aligned_cols=33 Identities=24% Similarity=0.134 Sum_probs=16.7
Q ss_pred ccEEEeecCCchh--HHhcCCCCccEeEecccCCC
Q 039643 282 LKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 282 L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~ 314 (520)
|+.+++.+..... ..+...++++.|++..+...
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcccc
Confidence 5555555422111 33455666666666655444
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=76.46 E-value=0.27 Score=53.03 Aligned_cols=126 Identities=18% Similarity=0.099 Sum_probs=62.9
Q ss_pred ccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecC--hHHHHHHHhcCCCcceeeeeccCCcc-eecccc
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYAN--EQMVHNLIAECCSLEDLSLRYTLGLK-FFSVSK 193 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~--~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~~ 193 (520)
.+|..+..+..|+.|+|+.+.+..-+...++--||.|-+.+++++ ... +..-+.|..|+.+.|.... .-.+.+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~----ig~~~tl~~ld~s~nei~slpsql~~ 187 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE----IGLLPTLAHLDVSKNEIQSLPSQLGY 187 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc----cccchhHHHhhhhhhhhhhchHHhhh
Confidence 456666666777777777665543222334444677777666541 112 2234556666666554211 112334
Q ss_pred ccccceEEEecccCC-CCceeeeCCceeEEEecc------ccccCCCCCcceEEecccccc
Q 039643 194 AHKLKNMVIVDYSRS-SELESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLE 247 (520)
Q Consensus 194 ~~~Lk~L~I~~~~~~-~~~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~ 247 (520)
+.+|+.|.+..+... .+.... .-.|..|++++ ++.|..|..|+.+.|++|..+
T Consensus 188 l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 566666666655421 011111 12244444431 344556666666666665554
No 68
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=76.28 E-value=1.3 Score=47.08 Aligned_cols=81 Identities=17% Similarity=0.087 Sum_probs=38.1
Q ss_pred cccCCCccEEEEeccccCCCcc-cCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccCCcceeccccccccce
Q 039643 122 IYSAKLLTTLVLNGCRLDEPLI-AINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKN 199 (520)
Q Consensus 122 l~~~~sL~~L~L~~c~l~~p~~-~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~ 199 (520)
+..+++|+.|.|.++.+..... ...+++|+.|+|+++.+ +-..+ ..++.|+.|.+.++.....-....+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCccchhhhc
Confidence 3344566666666655533233 45566666666666555 21222 233446666665554211111112445555
Q ss_pred EEEeccc
Q 039643 200 MVIVDYS 206 (520)
Q Consensus 200 L~I~~~~ 206 (520)
++++++.
T Consensus 167 l~l~~n~ 173 (414)
T KOG0531|consen 167 LDLSYNR 173 (414)
T ss_pred ccCCcch
Confidence 5555554
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=74.47 E-value=0.73 Score=51.24 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=25.4
Q ss_pred CCCccEEEEeccccCC---CcccCCCCCCCEEEecceec
Q 039643 125 AKLLTTLVLNGCRLDE---PLIAINLNSLKNLSLQRVYA 160 (520)
Q Consensus 125 ~~sL~~L~L~~c~l~~---p~~~~~l~sLk~L~L~~v~~ 160 (520)
+++++.|++-..--.. |-....|.+||.|.|++|.+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcch
Confidence 3566777776542221 44567899999999999976
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=74.02 E-value=2.3 Score=36.46 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=25.9
Q ss_pred cccCCCccEEEEecc--ccCCCcccCCCCCCCEEEecce-e-cChHHHHHHHhcCCCcceeeeec
Q 039643 122 IYSAKLLTTLVLNGC--RLDEPLIAINLNSLKNLSLQRV-Y-ANEQMVHNLIAECCSLEDLSLRY 182 (520)
Q Consensus 122 l~~~~sL~~L~L~~c--~l~~p~~~~~l~sLk~L~L~~v-~-~~~~~l~~Lls~CP~LE~L~L~~ 182 (520)
+..|..|+.+.+... .+. ...+.++++|+.+.+... . +.+ ..+.+|+.|+.+.+.+
T Consensus 8 F~~~~~l~~i~~~~~~~~I~-~~~F~~~~~l~~i~~~~~~~~i~~----~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPNTIKKIG-ENAFSNCTSLKSINFPNNLTSIGD----NAFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETST--EE--TTTTTT-TT-SEEEESSTTSCE-T----TTTTT-TT-EEEEETS
T ss_pred HhCCCCCCEEEECCCeeEeC-hhhcccccccccccccccccccce----eeeecccccccccccc
Confidence 334567777777642 121 134566667777777642 1 121 1355677777777754
No 71
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=68.92 E-value=2.4 Score=44.13 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=51.5
Q ss_pred ccCCCCCCCEEEecceecC---hHHHHHHHhcCCCcceeeeeccCC--cceeccccccccceEEEecccCCCCceeeeCC
Q 039643 143 IAINLNSLKNLSLQRVYAN---EQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSELESIVAP 217 (520)
Q Consensus 143 ~~~~l~sLk~L~L~~v~~~---~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP 217 (520)
.+..+|+|++|.|+++.++ +++| .+...+++|.|.++.- +..-.+.++..|+.|++.++..
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aF----e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i---------- 334 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAF----EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI---------- 334 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhh----cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee----------
Confidence 4678888888888888763 3343 3446788888877641 2222234577888888887762
Q ss_pred ceeEEEeccccccCCCCCcceEEecccc
Q 039643 218 SLQQLTLVRVIVVATCPNLKKLHLSEIV 245 (520)
Q Consensus 218 ~L~~L~l~~~~~~~~l~~L~~L~L~~~~ 245 (520)
+++ .+..|..+.+|.++++-.+.
T Consensus 335 --t~~---~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 335 --TTV---APGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred --EEE---ecccccccceeeeeehccCc
Confidence 111 13345566666677665433
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.92 E-value=6 Score=23.48 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=11.0
Q ss_pred CCCCEEEecceecChHHHHH
Q 039643 148 NSLKNLSLQRVYANEQMVHN 167 (520)
Q Consensus 148 ~sLk~L~L~~v~~~~~~l~~ 167 (520)
++|++|+|+++.+++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 56777777777765544443
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=58.61 E-value=11 Score=23.00 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=5.8
Q ss_pred CCCcceeeeeccC
Q 039643 172 CCSLEDLSLRYTL 184 (520)
Q Consensus 172 CP~LE~L~L~~c~ 184 (520)
||.|+.|+|.+|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3444444444443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=54.23 E-value=7 Score=22.83 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=8.2
Q ss_pred CccEEEEeccccC
Q 039643 127 LLTTLVLNGCRLD 139 (520)
Q Consensus 127 sL~~L~L~~c~l~ 139 (520)
+|++|+|++|.+.
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4667777776553
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=52.47 E-value=16 Score=30.99 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=4.3
Q ss_pred hcCCCcceeeee
Q 039643 170 AECCSLEDLSLR 181 (520)
Q Consensus 170 s~CP~LE~L~L~ 181 (520)
.+|+.|+.+.+.
T Consensus 9 ~~~~~l~~i~~~ 20 (129)
T PF13306_consen 9 YNCSNLESITFP 20 (129)
T ss_dssp TT-TT--EEEET
T ss_pred hCCCCCCEEEEC
Confidence 345555555544
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=51.16 E-value=11 Score=20.63 Aligned_cols=13 Identities=23% Similarity=0.283 Sum_probs=5.7
Q ss_pred CCCCEEEecceec
Q 039643 148 NSLKNLSLQRVYA 160 (520)
Q Consensus 148 ~sLk~L~L~~v~~ 160 (520)
++||+|+|++|.+
T Consensus 1 ~~L~~L~l~~n~L 13 (17)
T PF13504_consen 1 PNLRTLDLSNNRL 13 (17)
T ss_dssp TT-SEEEETSS--
T ss_pred CccCEEECCCCCC
Confidence 3556666665543
No 77
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=47.26 E-value=4.8 Score=43.81 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=67.2
Q ss_pred HHHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcC
Q 039643 94 LAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAEC 172 (520)
Q Consensus 94 ~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~C 172 (520)
.++...++.|.+... ....+|..+....+|..|+.+.|.+ ..|+..+++.+|+.|.+..+++.+ -.+.+ . |
T Consensus 139 ~lC~lpLkvli~sNN-----kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El-~-~ 210 (722)
T KOG0532|consen 139 GLCDLPLKVLIVSNN-----KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEEL-C-S 210 (722)
T ss_pred hhhcCcceeEEEecC-----ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHH-h-C
Confidence 445566677766553 3456777777677888888887755 447777888888888877766521 11122 2 5
Q ss_pred CCcceeeeeccCC-cceeccccccccceEEEecccC
Q 039643 173 CSLEDLSLRYTLG-LKFFSVSKAHKLKNMVIVDYSR 207 (520)
Q Consensus 173 P~LE~L~L~~c~~-l~~l~I~~~~~Lk~L~I~~~~~ 207 (520)
--|..|+++.+.. ..++.+..+..|+.|.+.++..
T Consensus 211 LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 211 LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred CceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 5567777765542 1234555677888888887753
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=45.97 E-value=2.1 Score=38.28 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=35.1
Q ss_pred cccCCCccEEEEeccccC-CCc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccC
Q 039643 122 IYSAKLLTTLVLNGCRLD-EPL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTL 184 (520)
Q Consensus 122 l~~~~sL~~L~L~~c~l~-~p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~ 184 (520)
+.....|+..+|+++.+. +|+ ....||.+++|+|.++.+.+-.. =+...|.|+.|++..+.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe--E~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE--ELAAMPALRSLNLRFNP 111 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH--HHhhhHHhhhcccccCc
Confidence 334455666677776663 333 34556677777777776532111 14556677777666654
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=38.52 E-value=34 Score=21.25 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=15.1
Q ss_pred CCCCEEEecceecChHHHHHH
Q 039643 148 NSLKNLSLQRVYANEQMVHNL 168 (520)
Q Consensus 148 ~sLk~L~L~~v~~~~~~l~~L 168 (520)
++|++|+|+++.+.+.....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 578888888888865555444
No 80
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=33.40 E-value=13 Score=25.97 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=15.3
Q ss_pred cccceeeecccCchhHHHh
Q 039643 6 ELQIMDRISELPTFWKEKD 24 (520)
Q Consensus 6 ~~~~AvrTsvLSkRWr~lW 24 (520)
+.+|-++.+.+||+|+++-
T Consensus 17 ~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 17 DPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp -HHHHHHHTTSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5667789999999999854
No 81
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=25.67 E-value=40 Score=30.35 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=38.1
Q ss_pred cccccCccccc-CCCccEEEEecccc-CCCcccCCCCCCCEEEecceec
Q 039643 114 SAYTLPQAIYS-AKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYA 160 (520)
Q Consensus 114 ~~~~LP~~l~~-~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~ 160 (520)
..-.+|+.+.. .++++.|+|.++.+ ++|..+..+|.||.|+++.+.+
T Consensus 64 ~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 64 GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 44567776543 45899999999966 6688899999999999999887
No 82
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=20.53 E-value=23 Score=24.58 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=17.0
Q ss_pred cccceeeecccCchhHHHhHHhh
Q 039643 6 ELQIMDRISELPTFWKEKDEELQ 28 (520)
Q Consensus 6 ~~~~AvrTsvLSkRWr~lW~~~p 28 (520)
+.++.++.+.+||+|+++..+.+
T Consensus 19 ~~~~~~~l~~vsk~~~~~~~~~~ 41 (48)
T PF00646_consen 19 DPKDLLRLSLVSKRWRSLVDSPR 41 (48)
T ss_dssp -HHHHHHHCTT-HHHHHHHTTHH
T ss_pred cHHHHHHHHHHhhHHHHHHcCCC
Confidence 34567888999999999887654
Done!