Query 039643
Match_columns 520
No_of_seqs 335 out of 2225
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 20:17:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.6 4.5E-15 1.5E-19 161.7 13.7 368 4-396 28-472 (592)
2 2p1m_B Transport inhibitor res 99.6 1E-14 3.5E-19 158.8 12.8 284 6-309 23-405 (594)
3 4fmz_A Internalin; leucine ric 99.5 8.5E-13 2.9E-17 134.0 19.4 246 97-363 65-320 (347)
4 4fcg_A Uncharacterized protein 99.5 2.9E-13 1E-17 137.3 14.5 197 91-312 74-288 (328)
5 4fmz_A Internalin; leucine ric 99.4 1.5E-12 5.1E-17 132.2 17.0 268 97-396 43-320 (347)
6 1o6v_A Internalin A; bacterial 99.4 5.7E-12 1.9E-16 133.7 17.9 143 122-270 64-210 (466)
7 1o6v_A Internalin A; bacterial 99.4 1.3E-11 4.3E-16 131.0 19.4 243 97-363 67-318 (466)
8 2id5_A Lingo-1, leucine rich r 99.4 1.1E-12 3.9E-17 139.2 10.9 276 98-396 32-329 (477)
9 3rgz_A Protein brassinosteroid 99.4 5.2E-13 1.8E-17 150.6 7.6 196 117-313 91-306 (768)
10 4eco_A Uncharacterized protein 99.3 3.9E-12 1.3E-16 140.5 13.8 273 98-395 206-544 (636)
11 3t6q_A CD180 antigen; protein- 99.3 1.6E-12 5.5E-17 142.0 10.7 274 99-395 255-555 (606)
12 2ast_B S-phase kinase-associat 99.3 1.8E-12 6.1E-17 130.9 10.0 215 90-311 38-282 (336)
13 2ast_B S-phase kinase-associat 99.3 5.9E-14 2E-18 141.8 -1.5 82 230-315 218-307 (336)
14 3t6q_A CD180 antigen; protein- 99.3 2.7E-12 9.4E-17 140.2 11.4 236 127-373 255-518 (606)
15 3vq2_A TLR4, TOLL-like recepto 99.3 3.3E-12 1.1E-16 139.6 11.0 254 122-395 281-553 (606)
16 3rgz_A Protein brassinosteroid 99.3 8.7E-12 3E-16 140.7 14.6 147 123-270 197-354 (768)
17 3v47_A TOLL-like receptor 5B a 99.3 2.3E-11 7.8E-16 128.0 15.6 279 98-396 54-380 (455)
18 3o6n_A APL1; leucine-rich repe 99.3 7.3E-12 2.5E-16 129.5 11.2 117 258-395 225-347 (390)
19 2id5_A Lingo-1, leucine rich r 99.3 9.5E-12 3.3E-16 132.0 11.7 262 115-396 23-305 (477)
20 4ecn_A Leucine-rich repeat pro 99.3 2.4E-11 8.2E-16 138.3 15.2 217 98-316 448-712 (876)
21 1ogq_A PGIP-2, polygalacturona 99.3 1.2E-11 3.9E-16 124.5 10.8 211 98-313 50-280 (313)
22 3oja_B Anopheles plasmodium-re 99.3 1E-11 3.5E-16 136.1 10.3 248 121-395 94-353 (597)
23 2z66_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 123.9 9.4 222 115-338 19-263 (306)
24 3o6n_A APL1; leucine-rich repe 99.2 3.7E-11 1.3E-15 124.2 13.6 269 98-396 45-327 (390)
25 4fcg_A Uncharacterized protein 99.2 2.2E-11 7.5E-16 123.4 11.6 221 125-362 80-309 (328)
26 3v47_A TOLL-like receptor 5B a 99.2 3.5E-11 1.2E-15 126.6 13.2 83 98-184 79-165 (455)
27 1z7x_W Ribonuclease inhibitor; 99.2 1E-11 3.6E-16 130.7 8.4 270 91-363 20-350 (461)
28 2z80_A TOLL-like receptor 2, v 99.2 2.4E-10 8.2E-15 116.5 18.1 238 98-342 52-320 (353)
29 2z7x_B TOLL-like receptor 1, v 99.2 1.8E-10 6E-15 123.5 16.8 278 98-395 45-407 (520)
30 3oja_A Leucine-rich immune mol 99.2 3E-11 1E-15 129.1 10.4 221 127-362 35-270 (487)
31 3o53_A Protein LRIM1, AGAP0063 99.2 2.6E-11 8.9E-16 122.0 9.2 243 87-363 21-271 (317)
32 3zyi_A Leucine-rich repeat-con 99.2 4.1E-11 1.4E-15 126.6 9.9 82 230-314 192-279 (452)
33 4eco_A Uncharacterized protein 99.2 6.9E-11 2.4E-15 130.5 11.9 270 98-395 249-595 (636)
34 3oja_B Anopheles plasmodium-re 99.2 1.2E-10 4.1E-15 127.5 13.6 206 98-315 51-268 (597)
35 4ecn_A Leucine-rich repeat pro 99.2 6E-11 2.1E-15 135.0 11.5 271 97-396 490-836 (876)
36 3vq2_A TLR4, TOLL-like recepto 99.2 6.8E-11 2.3E-15 129.1 11.3 208 97-315 284-511 (606)
37 1h6u_A Internalin H; cell adhe 99.2 1.1E-10 3.9E-15 117.0 12.0 188 98-314 41-230 (308)
38 3ogk_B Coronatine-insensitive 99.2 1.8E-10 6.1E-15 125.2 13.9 252 98-363 220-522 (592)
39 2z81_A CD282 antigen, TOLL-lik 99.2 7.2E-10 2.5E-14 119.4 18.5 209 98-312 26-262 (549)
40 2z63_A TOLL-like receptor 4, v 99.1 6.7E-11 2.3E-15 127.9 9.9 191 118-313 274-482 (570)
41 3zyj_A Leucine-rich repeat-con 99.1 6.1E-11 2.1E-15 124.7 9.3 194 117-316 57-270 (440)
42 1ziw_A TOLL-like receptor 3; i 99.1 2.1E-10 7.1E-15 127.1 13.8 146 170-315 326-494 (680)
43 1ozn_A Reticulon 4 receptor; N 99.1 1.2E-10 4.3E-15 114.9 10.1 185 126-312 32-236 (285)
44 2z81_A CD282 antigen, TOLL-lik 99.1 2.8E-10 9.6E-15 122.6 13.7 257 98-363 50-396 (549)
45 3bz5_A Internalin-J, INLJ; leu 99.1 3E-10 1E-14 120.5 13.6 201 98-315 42-247 (457)
46 3j0a_A TOLL-like receptor 5; m 99.1 2.4E-10 8.1E-15 130.3 12.7 123 98-225 24-156 (844)
47 3j0a_A TOLL-like receptor 5; m 99.1 8.1E-10 2.8E-14 125.8 16.8 98 217-315 266-376 (844)
48 1ogq_A PGIP-2, polygalacturona 99.1 6.9E-11 2.4E-15 118.8 6.5 209 97-312 75-302 (313)
49 2z7x_B TOLL-like receptor 1, v 99.1 2.1E-09 7.3E-14 115.0 17.9 147 231-396 321-477 (520)
50 3zyi_A Leucine-rich repeat-con 99.1 3.8E-10 1.3E-14 119.1 11.7 210 98-313 75-302 (452)
51 3zyj_A Leucine-rich repeat-con 99.1 4.3E-10 1.5E-14 118.3 12.1 209 98-313 64-291 (440)
52 2z63_A TOLL-like receptor 4, v 99.1 3E-10 1E-14 122.7 11.1 232 98-341 282-536 (570)
53 2z80_A TOLL-like receptor 2, v 99.1 4.5E-10 1.5E-14 114.5 11.3 252 115-396 43-310 (353)
54 1z7x_W Ribonuclease inhibitor; 99.1 3.8E-11 1.3E-15 126.4 3.2 214 99-315 4-270 (461)
55 2z66_A Variable lymphocyte rec 99.0 7.5E-11 2.6E-15 117.6 4.4 209 98-314 28-261 (306)
56 3oja_A Leucine-rich immune mol 99.0 3.4E-10 1.2E-14 120.9 9.4 201 99-314 35-250 (487)
57 3o53_A Protein LRIM1, AGAP0063 99.0 4.3E-10 1.5E-14 113.1 9.5 198 97-309 57-270 (317)
58 3bz5_A Internalin-J, INLJ; leu 99.0 1.3E-09 4.3E-14 115.6 13.5 175 97-289 63-242 (457)
59 1xku_A Decorin; proteoglycan, 99.0 8.6E-10 2.9E-14 111.2 11.6 208 98-315 52-277 (330)
60 1h6u_A Internalin H; cell adhe 99.0 1.4E-09 4.9E-14 108.9 13.0 102 97-207 62-163 (308)
61 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 2.3E-09 7.7E-14 116.3 15.6 147 231-396 350-506 (562)
62 2ca6_A RAN GTPase-activating p 99.0 3.7E-10 1.3E-14 116.6 8.7 218 97-314 31-316 (386)
63 1xku_A Decorin; proteoglycan, 99.0 1.7E-09 5.9E-14 108.9 13.5 208 98-314 76-306 (330)
64 3g06_A SSPH2 (leucine-rich rep 99.0 1.9E-09 6.6E-14 118.5 13.7 248 98-395 40-292 (622)
65 2ft3_A Biglycan; proteoglycan, 99.0 6.2E-10 2.1E-14 112.4 9.0 124 230-363 143-273 (332)
66 1wwl_A Monocyte differentiatio 99.0 2.1E-10 7.1E-15 115.1 5.3 181 124-316 93-289 (312)
67 2z62_A TOLL-like receptor 4, v 99.0 4.7E-10 1.6E-14 110.2 7.5 186 126-313 28-236 (276)
68 1ziw_A TOLL-like receptor 3; i 99.0 1.6E-09 5.5E-14 120.0 12.0 251 98-362 25-304 (680)
69 2p1m_B Transport inhibitor res 99.0 4.6E-10 1.6E-14 121.9 6.6 239 117-361 256-538 (594)
70 1ozn_A Reticulon 4 receptor; N 99.0 8.7E-10 3E-14 108.8 7.7 187 97-290 31-235 (285)
71 2ca6_A RAN GTPase-activating p 98.9 9.9E-10 3.4E-14 113.3 8.4 93 115-207 21-134 (386)
72 2o6q_A Variable lymphocyte rec 98.9 2.2E-09 7.5E-14 105.2 9.9 179 116-313 29-217 (270)
73 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 6.6E-09 2.2E-13 112.6 14.2 100 98-206 52-157 (562)
74 1wwl_A Monocyte differentiatio 98.9 8.7E-10 3E-14 110.5 6.0 125 228-363 167-305 (312)
75 2ft3_A Biglycan; proteoglycan, 98.9 1.3E-09 4.3E-14 110.1 7.2 189 121-314 73-277 (332)
76 3rfs_A Internalin B, repeat mo 98.9 4.3E-09 1.5E-13 103.3 10.6 80 124-206 39-120 (272)
77 1h6t_A Internalin B; cell adhe 98.9 5E-09 1.7E-13 104.1 11.0 166 125-313 45-212 (291)
78 2xwt_C Thyrotropin receptor; s 98.9 4.3E-09 1.5E-13 101.0 9.2 171 126-315 31-219 (239)
79 1m9s_A Internalin B; cell inva 98.9 3.3E-09 1.1E-13 116.3 9.4 144 121-270 60-208 (605)
80 4glp_A Monocyte differentiatio 98.8 1.4E-09 4.7E-14 108.9 3.9 180 125-315 90-286 (310)
81 1p9a_G Platelet glycoprotein I 98.8 1.3E-08 4.3E-13 101.2 10.7 40 230-270 120-159 (290)
82 3rfs_A Internalin B, repeat mo 98.8 5.1E-09 1.7E-13 102.8 7.3 190 97-313 40-234 (272)
83 4ezg_A Putative uncharacterize 98.8 1.5E-08 5.1E-13 94.4 9.3 147 98-270 44-192 (197)
84 1h6t_A Internalin B; cell adhe 98.8 3.1E-08 1.1E-12 98.3 11.8 163 98-289 46-209 (291)
85 2o6q_A Variable lymphocyte rec 98.8 1.1E-08 3.6E-13 100.3 8.1 170 98-289 37-214 (270)
86 1jl5_A Outer protein YOPM; leu 98.8 3.4E-08 1.1E-12 104.5 12.1 196 98-315 131-331 (454)
87 2xwt_C Thyrotropin receptor; s 98.7 1.5E-08 5.1E-13 97.2 8.4 190 98-310 31-235 (239)
88 1p9a_G Platelet glycoprotein I 98.7 1.5E-08 5E-13 100.7 8.5 161 99-270 11-183 (290)
89 1m9s_A Internalin B; cell inva 98.7 1.6E-08 5.4E-13 110.9 9.4 163 123-291 40-208 (605)
90 3goz_A Leucine-rich repeat-con 98.7 7.5E-09 2.6E-13 105.9 6.2 187 117-314 13-238 (362)
91 4ezg_A Putative uncharacterize 98.7 1.9E-08 6.5E-13 93.7 7.9 147 123-290 41-191 (197)
92 2z62_A TOLL-like receptor 4, v 98.7 1.2E-08 4.1E-13 100.0 6.3 184 98-289 28-233 (276)
93 3g06_A SSPH2 (leucine-rich rep 98.7 1.6E-07 5.4E-12 103.2 14.8 216 98-339 61-300 (622)
94 3m19_A Variable lymphocyte rec 98.7 2.1E-08 7.3E-13 97.0 6.5 156 115-289 26-188 (251)
95 3goz_A Leucine-rich repeat-con 98.7 2.3E-08 7.9E-13 102.2 6.9 212 98-314 22-297 (362)
96 4glp_A Monocyte differentiatio 98.6 1.2E-08 4.2E-13 101.9 4.4 209 87-314 80-307 (310)
97 1xeu_A Internalin C; cellular 98.6 5.1E-08 1.7E-12 95.4 8.0 145 121-289 36-181 (263)
98 1jl5_A Outer protein YOPM; leu 98.6 2.4E-07 8.3E-12 97.9 13.5 176 126-315 131-311 (454)
99 3m19_A Variable lymphocyte rec 98.6 9.2E-08 3.2E-12 92.5 8.2 169 126-313 14-191 (251)
100 4ay9_X Follicle-stimulating ho 98.5 1.5E-07 5.3E-12 95.7 8.1 54 254-308 197-253 (350)
101 4g8a_A TOLL-like receptor 4; l 98.4 5.4E-07 1.9E-11 97.9 10.4 151 230-395 416-575 (635)
102 1xeu_A Internalin C; cellular 98.4 1.4E-07 4.7E-12 92.3 4.9 166 125-314 18-185 (263)
103 2ell_A Acidic leucine-rich nuc 98.4 2.6E-07 8.9E-12 83.4 6.1 129 126-271 24-159 (168)
104 2o6s_A Variable lymphocyte rec 98.4 4E-07 1.4E-11 85.1 7.4 87 117-206 21-111 (208)
105 3cvr_A Invasion plasmid antige 98.3 1E-06 3.4E-11 95.8 10.0 176 98-314 59-243 (571)
106 2ell_A Acidic leucine-rich nuc 98.3 8.3E-07 2.8E-11 80.0 7.7 133 98-246 24-159 (168)
107 4g8a_A TOLL-like receptor 4; l 98.3 1.4E-06 4.8E-11 94.6 10.8 194 145-338 368-582 (635)
108 3e6j_A Variable lymphocyte rec 98.3 4.6E-07 1.6E-11 86.5 5.9 136 115-270 31-170 (229)
109 2v9t_B SLIT homolog 2 protein 98.3 5.8E-07 2E-11 85.3 6.0 137 115-270 23-163 (220)
110 2je0_A Acidic leucine-rich nuc 98.3 2.7E-07 9.1E-12 81.6 3.3 125 126-267 17-148 (149)
111 2o6s_A Variable lymphocyte rec 98.2 7E-07 2.4E-11 83.5 5.2 144 98-270 28-176 (208)
112 3e4g_A ATP synthase subunit S, 98.2 1.3E-06 4.4E-11 80.0 6.6 94 114-207 49-151 (176)
113 2je0_A Acidic leucine-rich nuc 98.2 9.3E-07 3.2E-11 78.0 5.1 106 98-207 17-125 (149)
114 1a9n_A U2A', U2A'; complex (nu 98.2 1.4E-06 4.9E-11 79.3 5.5 132 122-271 15-152 (176)
115 2ra8_A Uncharacterized protein 98.2 3.4E-06 1.2E-10 86.4 8.6 60 164-224 163-226 (362)
116 1ds9_A Outer arm dynein; leuci 98.1 1.3E-07 4.3E-12 88.1 -2.3 134 116-265 38-180 (198)
117 2xot_A Amphoterin-induced prot 98.1 9.4E-07 3.2E-11 90.2 3.9 87 117-206 32-123 (361)
118 2v70_A SLIT-2, SLIT homolog 2 98.1 1.5E-06 5.3E-11 82.3 5.0 136 116-270 24-164 (220)
119 4ay9_X Follicle-stimulating ho 98.0 1.3E-05 4.3E-10 81.4 9.3 182 115-315 21-216 (350)
120 2v9t_B SLIT homolog 2 protein 98.0 6.5E-06 2.2E-10 78.0 6.6 130 98-248 32-166 (220)
121 4b8c_D Glucose-repressible alc 98.0 2.2E-06 7.7E-11 95.8 3.7 114 118-249 216-331 (727)
122 2xot_A Amphoterin-induced prot 98.0 4.7E-06 1.6E-10 85.0 5.3 82 124-206 62-147 (361)
123 2ra8_A Uncharacterized protein 98.0 3.5E-05 1.2E-09 78.8 11.3 159 98-270 139-318 (362)
124 2v70_A SLIT-2, SLIT homolog 2 97.9 1.4E-05 4.7E-10 75.7 7.2 130 98-248 32-167 (220)
125 1dce_A Protein (RAB geranylger 97.9 1.1E-05 3.9E-10 87.5 6.3 134 118-271 401-545 (567)
126 3e6j_A Variable lymphocyte rec 97.9 3.1E-05 1.1E-09 73.6 8.5 131 98-248 40-173 (229)
127 3cvr_A Invasion plasmid antige 97.8 3.1E-05 1.1E-09 84.0 8.2 149 98-271 80-242 (571)
128 1a9n_A U2A', U2A'; complex (nu 97.8 9.8E-06 3.3E-10 73.7 3.5 138 142-312 13-151 (176)
129 3un9_A NLR family member X1; l 97.8 1.3E-05 4.4E-10 82.4 4.3 82 233-314 154-252 (372)
130 1w8a_A SLIT protein; signaling 97.7 2.6E-05 8.9E-10 72.0 5.2 116 115-248 20-140 (192)
131 1w8a_A SLIT protein; signaling 97.7 1.6E-05 5.6E-10 73.4 3.7 124 129-270 11-137 (192)
132 3un9_A NLR family member X1; l 97.7 5E-06 1.7E-10 85.5 -0.3 36 148-183 101-136 (372)
133 2wfh_A SLIT homolog 2 protein 97.7 3.3E-05 1.1E-09 71.5 5.0 64 117-183 24-88 (193)
134 3e4g_A ATP synthase subunit S, 97.6 3.1E-05 1.1E-09 70.8 3.7 61 145-206 58-125 (176)
135 4fdw_A Leucine rich hypothetic 97.6 0.00018 6.1E-09 74.6 9.9 191 117-315 148-359 (401)
136 2wfh_A SLIT homolog 2 protein 97.6 6.8E-05 2.3E-09 69.4 5.5 80 98-183 31-112 (193)
137 1dce_A Protein (RAB geranylger 97.5 6.5E-05 2.2E-09 81.5 5.9 101 98-207 441-545 (567)
138 2o6r_A Variable lymphocyte rec 97.5 0.00014 4.8E-09 65.8 7.0 115 116-248 20-138 (177)
139 3sb4_A Hypothetical leucine ri 97.5 8.7E-05 3E-09 74.4 6.0 154 125-286 100-327 (329)
140 3sb4_A Hypothetical leucine ri 97.3 0.0004 1.4E-08 69.5 8.3 14 125-138 48-61 (329)
141 4b8c_D Glucose-repressible alc 97.2 7.7E-05 2.6E-09 83.3 1.9 103 98-207 224-328 (727)
142 2o6r_A Variable lymphocyte rec 97.2 0.00028 9.5E-09 63.8 5.2 104 98-207 28-136 (177)
143 1ds9_A Outer arm dynein; leuci 97.2 8.9E-05 3E-09 68.6 1.9 107 143-270 43-151 (198)
144 3g39_A Variable lymphocyte rec 97.2 0.00027 9.3E-09 63.8 4.6 42 117-160 23-66 (170)
145 2r9u_A Variable lymphocyte rec 97.1 0.00034 1.2E-08 63.5 4.7 42 117-160 26-69 (174)
146 1io0_A Tropomodulin; LRR prote 96.8 0.0012 4.2E-08 60.4 5.1 40 231-270 118-162 (185)
147 1io0_A Tropomodulin; LRR prote 96.7 0.00053 1.8E-08 62.9 2.3 93 145-248 62-165 (185)
148 4fdw_A Leucine rich hypothetic 96.6 0.0076 2.6E-07 62.2 10.7 162 121-290 175-355 (401)
149 2ifg_A High affinity nerve gro 96.4 0.002 6.9E-08 64.6 4.3 68 115-184 21-91 (347)
150 3g39_A Variable lymphocyte rec 96.1 0.0038 1.3E-07 56.1 3.8 81 98-184 30-113 (170)
151 2r9u_A Variable lymphocyte rec 96.0 0.0049 1.7E-07 55.7 4.2 81 98-184 33-116 (174)
152 3rw6_A Nuclear RNA export fact 94.2 0.054 1.8E-06 52.6 5.9 86 165-265 162-257 (267)
153 3rw6_A Nuclear RNA export fact 93.8 0.043 1.5E-06 53.3 4.2 58 125-184 169-231 (267)
154 2ifg_A High affinity nerve gro 93.2 0.035 1.2E-06 55.3 2.6 80 98-184 31-114 (347)
155 4fs7_A Uncharacterized protein 92.2 0.46 1.6E-05 48.2 9.4 177 122-310 181-375 (394)
156 4fs7_A Uncharacterized protein 91.6 0.27 9.1E-06 50.0 6.8 140 120-269 224-376 (394)
157 4gt6_A Cell surface protein; l 87.2 0.83 2.8E-05 46.2 6.5 116 169-288 261-386 (394)
158 4gt6_A Cell surface protein; l 86.6 0.67 2.3E-05 46.9 5.4 113 192-310 262-387 (394)
159 1pgv_A TMD-1, tropomodulin TMD 84.8 0.33 1.1E-05 44.7 1.8 99 84-182 25-135 (197)
160 4h09_A Hypothetical leucine ri 71.0 8.4 0.00029 38.2 7.5 139 122-268 190-342 (379)
161 4h09_A Hypothetical leucine ri 70.9 9.6 0.00033 37.8 7.9 162 120-288 152-341 (379)
162 3rfe_A Platelet glycoprotein I 54.4 7.1 0.00024 32.9 2.7 42 117-160 24-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 54.3 5.2 0.00018 36.6 2.0 94 91-184 61-168 (197)
164 3rfe_A Platelet glycoprotein I 33.2 13 0.00044 31.2 1.0 15 255-269 51-65 (130)
165 1fs1_A SKP2 F-BOX, cyclin A/CD 28.9 12 0.0004 25.9 -0.0 20 6-25 25-44 (53)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=4.5e-15 Score=161.69 Aligned_cols=368 Identities=17% Similarity=0.113 Sum_probs=197.1
Q ss_pred cccccceeeecccCchhHHHhHHhhcccc----hhhhHHHHHHhhhhcccCCccEEEEEeecCccccccccccceeeeee
Q 039643 4 ITELQIMDRISELPTFWKEKDEELQKEFD----ELKLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVV 79 (520)
Q Consensus 4 ~~~~~~AvrTsvLSkRWr~lW~~~p~~f~----~~~~vd~~L~~~~~~~~~~I~~F~L~~~~~~~~~~~~~~~~~~~~~f 79 (520)
+...+++++|+++||||++++........ +..+++..+.++. .++++.+..... ....+...
T Consensus 28 L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~L~~L~L~~~~~-~~~~~~~~-------- 93 (592)
T 3ogk_B 28 ITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFP-----NLRSLKLKGKPR-AAMFNLIP-------- 93 (592)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCT-----TCSEEEEECSCG-GGGGTCSC--------
T ss_pred cCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCC-----CCeEEEecCCcc-hhhccccc--------
Confidence 34568999999999999999765543211 2234455555433 588888865321 00000000
Q ss_pred cccCCCccHHHHHHHHHh--CCceEEEEEecCC------------------------CCCcccccCcccccCCCccEEEE
Q 039643 80 DVEGSSSLVDKWIGLAVG--NGVKELHIVVESS------------------------PHESAYTLPQAIYSAKLLTTLVL 133 (520)
Q Consensus 80 ~l~~~~~~v~~Wl~~a~~--~~VkeL~L~~~~~------------------------~~~~~~~LP~~l~~~~sL~~L~L 133 (520)
.........|+..... +++++|++....- .......++..+..|++|++|+|
T Consensus 94 --~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 171 (592)
T 3ogk_B 94 --ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171 (592)
T ss_dssp --TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEEC
T ss_pred --ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEEC
Confidence 0011223344443321 3455555543200 00001112222234556666666
Q ss_pred eccccCC------CcccCCCCCCCEEEecceecC---hHHHHHHHhcCCCcceeeeeccCCcc-eeccccccccceEEEe
Q 039643 134 NGCRLDE------PLIAINLNSLKNLSLQRVYAN---EQMVHNLIAECCSLEDLSLRYTLGLK-FFSVSKAHKLKNMVIV 203 (520)
Q Consensus 134 ~~c~l~~------p~~~~~l~sLk~L~L~~v~~~---~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~~~~~Lk~L~I~ 203 (520)
++|.+.. +....++++|++|+|.++.+. ...+..++.+||+|+.|++.+|.... .-.+.++++|+.|.++
T Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 6654321 112234566666666655542 45566666666777777766654211 0112335677777776
Q ss_pred cccCCCC-----ceeeeCCceeEEEecc------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc-
Q 039643 204 DYSRSSE-----LESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP- 271 (520)
Q Consensus 204 ~~~~~~~-----~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~- 271 (520)
....... ......++|+.+.+.. +..+..+++|++|+++++.+++..+..+++++++|+.|.+..+..
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~ 331 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD 331 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCH
Confidence 4321100 1123456788887742 223467889999999988887777777889999999999984322
Q ss_pred --ccccccccccccEEEeec----------CCchh-----HHhcCCCCccEeEecccCCCCcccccc-c-CCCcE-EEEe
Q 039643 272 --LERVKFSSNLLKRVAFLF----------CRSLR-----AVDLDTPNLLSFTFESVRIPTISISAS-H-QCPWN-VFFV 331 (520)
Q Consensus 272 --l~~~~~~f~~L~~L~L~~----------c~~l~-----~lL~~~P~L~~L~l~~~~~~~~~~~~l-~-~~~L~-v~~~ 331 (520)
+......+++|++|++.. |.... .+...+|+|+.|++..+.+.......+ . ...++ +.+.
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 111222457899999994 65543 445679999999997666553101111 1 11233 3332
Q ss_pred ----ccccccChhhHHHHHHHHHhccccccceEEEeccc-cccccccccccccccCCCCcccccceEEEE
Q 039643 332 ----HEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSV-NIRQMPFDLEEFKNRSPSLPFQVGNMRLIV 396 (520)
Q Consensus 332 ----~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~-~~~~i~~~L~~~p~asp~l~~~l~~L~l~~ 396 (520)
.+.+.+.+ +..-+..++.+++.|+.|.++..++ ........+. ..+| +|++|.+..
T Consensus 412 ~~~~~n~l~~~p--~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~------~~~~-~L~~L~L~~ 472 (592)
T 3ogk_B 412 LLDREERITDLP--LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG------QYSP-NVRWMLLGY 472 (592)
T ss_dssp ECSCCSCCSSCC--CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH------HSCT-TCCEEEECS
T ss_pred ecCCCccccCch--HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH------HhCc-cceEeeccC
Confidence 23333321 0122467788899999999974111 1222222221 1236 888998874
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=1e-14 Score=158.83 Aligned_cols=284 Identities=18% Similarity=0.249 Sum_probs=152.9
Q ss_pred cccceeeecccCchhHHHhHHhhcccc--hh--hhHHHHHHhhhhcccCCccEEEEEeecCccccccccccceeeeeecc
Q 039643 6 ELQIMDRISELPTFWKEKDEELQKEFD--EL--KLIDNNLVQFRNELKLGIQKWILLVRLKDVEGSSYLVNKWTALVVDV 81 (520)
Q Consensus 6 ~~~~AvrTsvLSkRWr~lW~~~p~~f~--~~--~~vd~~L~~~~~~~~~~I~~F~L~~~~~~~~~~~~~~~~~~~~~f~l 81 (520)
..++++|++.+||||+++.......++ .. ......+.++ +.++++.+...... .. +.+
T Consensus 23 ~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~-~~------------~~l 84 (594)
T 2p1m_B 23 LDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRF-----PKVRSVELKGKPHF-AD------------FNL 84 (594)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHC-----TTCCEEEEECSCGG-GG------------GTC
T ss_pred CchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhC-----CCceEEeccCCCch-hh------------ccc
Confidence 467899999999999998332211111 10 0112233332 36888888653210 00 000
Q ss_pred c--CCCccHHHHHHHHHh--CCceEEEEEecCCCC-----------------------CcccccCcccccCCCccEEEEe
Q 039643 82 E--GSSSLVDKWIGLAVG--NGVKELHIVVESSPH-----------------------ESAYTLPQAIYSAKLLTTLVLN 134 (520)
Q Consensus 82 ~--~~~~~v~~Wl~~a~~--~~VkeL~L~~~~~~~-----------------------~~~~~LP~~l~~~~sL~~L~L~ 134 (520)
. .-...++.|+..... .++++|++....-.. .....++..+..|++|++|+|+
T Consensus 85 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~ 164 (594)
T 2p1m_B 85 VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164 (594)
T ss_dssp SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECT
T ss_pred ccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCc
Confidence 0 012345566665432 467777775421000 0000122222345666666666
Q ss_pred ccccCC------CcccCCCCCCCEEEeccee--cChHHHHHHHhcCCCcceeeeeccCCccee--ccccccccceEEEec
Q 039643 135 GCRLDE------PLIAINLNSLKNLSLQRVY--ANEQMVHNLIAECCSLEDLSLRYTLGLKFF--SVSKAHKLKNMVIVD 204 (520)
Q Consensus 135 ~c~l~~------p~~~~~l~sLk~L~L~~v~--~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--~I~~~~~Lk~L~I~~ 204 (520)
+|.+.. +.....+++|++|+|.++. +++..+..++.+||+|+.|++.+|.....+ .+..+++|+.|.+..
T Consensus 165 ~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp TCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred CCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 654321 1122356677777777765 466677777777888888888877432211 112245666665443
Q ss_pred ccC----------------------------CC----CceeeeCCceeEEEecccc--------ccCCCCCcceEEeccc
Q 039643 205 YSR----------------------------SS----ELESIVAPSLQQLTLVRVI--------VVATCPNLKKLHLSEI 244 (520)
Q Consensus 205 ~~~----------------------------~~----~~~~i~aP~L~~L~l~~~~--------~~~~l~~L~~L~L~~~ 244 (520)
+.. .. +.+.-..++|++|.+.... .+..+++|++|++.++
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred ccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 321 00 0001135788888875311 1357888999888876
Q ss_pred ccchhHHHHHHhCCcccceeeccc--------ccccccc-----ccccccccEEEeecCCchh-----HHhcCCCCccEe
Q 039643 245 VLEDQEFHELISKFPLLEDLSVSS--------SQPLERV-----KFSSNLLKRVAFLFCRSLR-----AVDLDTPNLLSF 306 (520)
Q Consensus 245 ~~~~~~~~~ll~~l~~L~~L~L~~--------~~~l~~~-----~~~f~~L~~L~L~~c~~l~-----~lL~~~P~L~~L 306 (520)
+++..+..+..++++|+.|.|.. +..+... ...+++|++|.+. |..+. .+...+|+|+.|
T Consensus 325 -~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 325 -IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp -GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEE
T ss_pred -cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCccee
Confidence 54555666777789999998843 2222211 1135678888554 34432 333467888888
Q ss_pred Eec
Q 039643 307 TFE 309 (520)
Q Consensus 307 ~l~ 309 (520)
++.
T Consensus 403 ~L~ 405 (594)
T 2p1m_B 403 RLC 405 (594)
T ss_dssp EEE
T ss_pred Eee
Confidence 887
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.49 E-value=8.5e-13 Score=134.03 Aligned_cols=246 Identities=14% Similarity=0.134 Sum_probs=146.8
Q ss_pred hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
-.++++|++... ....+|. +..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+-. . +..++.|+
T Consensus 65 ~~~L~~L~l~~n-----~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~ 135 (347)
T 4fmz_A 65 LTNLEYLNLNGN-----QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMY 135 (347)
T ss_dssp CTTCCEEECCSS-----CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCC
T ss_pred cCCccEEEccCC-----ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCcee
Confidence 356777777553 1223444 6667778888888776654455777788888888777763211 1 56778888
Q ss_pred eeeeeccCCccee-ccccccccceEEEecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhH
Q 039643 177 DLSLRYTLGLKFF-SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQE 250 (520)
Q Consensus 177 ~L~L~~c~~l~~l-~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~ 250 (520)
.|++.+|.....+ .+.++++|+.|++.++...........++|+.|.+.. ...+..+++|+.++++++.+++..
T Consensus 136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc
Confidence 8888777543321 2445677888888777642111123567777777752 122566777777777776655421
Q ss_pred HHHHHhCCcccceeecccccccc-ccccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCCCcccccccC-CCcE
Q 039643 251 FHELISKFPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN 327 (520)
Q Consensus 251 ~~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~ 327 (520)
. +..+++|+.|.+++|.... +....+++|++|+++++.-.. ..+..+|+|+.|+++++.+..+ ..+.. ..++
T Consensus 216 ~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 216 P---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp G---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred h---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 1 6677788888887766421 112235677888777653222 4456777888888877766543 11111 1233
Q ss_pred -EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643 328 -VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL 363 (520)
Q Consensus 328 -v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~ 363 (520)
+.+.++.+.+.+ ...+.+++.|+.|.+..
T Consensus 291 ~L~L~~n~l~~~~-------~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 291 SLFLNNNQLGNED-------MEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp EEECCSSCCCGGG-------HHHHHTCTTCSEEECCS
T ss_pred EEECcCCcCCCcC-------hhHhhccccCCEEEccC
Confidence 444555554332 34456777788777774
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.48 E-value=2.9e-13 Score=137.29 Aligned_cols=197 Identities=19% Similarity=0.186 Sum_probs=121.7
Q ss_pred HHHHHHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHH
Q 039643 91 WIGLAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLI 169 (520)
Q Consensus 91 Wl~~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Ll 169 (520)
-+..+...+|++|++... ....+|..++.+++|++|+|++|.+ ..|..+..+++|++|+|+++.+. .++.-+
T Consensus 74 ~l~~~~~~~l~~L~L~~n-----~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l 146 (328)
T 4fcg_A 74 LLEDATQPGRVALELRSV-----PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASI 146 (328)
T ss_dssp HHHHHTSTTCCEEEEESS-----CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGG
T ss_pred HHhcccccceeEEEccCC-----CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHH
Confidence 334444589999999875 2337899999999999999999876 44777899999999999999875 334457
Q ss_pred hcCCCcceeeeeccCCccee--c---------cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcce
Q 039643 170 AECCSLEDLSLRYTLGLKFF--S---------VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKK 238 (520)
Q Consensus 170 s~CP~LE~L~L~~c~~l~~l--~---------I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~ 238 (520)
.+++.|+.|+|.+|.....+ . +.++++|+.|+++++... .+ +..+..+++|++
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~l--------------p~~l~~l~~L~~ 210 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SL--------------PASIANLQNLKS 210 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CC--------------CGGGGGCTTCCE
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cc--------------hHhhcCCCCCCE
Confidence 88999999999998643322 1 223788999999888642 10 112344455555
Q ss_pred EEecccccchhHHHHHHhCCcccceeeccccccccccc---cccccccEEEeecCCchh---HHhcCCCCccEeEecccC
Q 039643 239 LHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVK---FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVR 312 (520)
Q Consensus 239 L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~---~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~ 312 (520)
|+++++.+++ +...++++++|+.|++++|....... ..+++|++|+|++|.... ..+..+|+|+.|+++++.
T Consensus 211 L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 211 LKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp EEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred EEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 5555444432 11124445555555555544322111 123445555555443322 223445555555555543
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.44 E-value=1.5e-12 Score=132.19 Aligned_cols=268 Identities=15% Similarity=0.085 Sum_probs=184.5
Q ss_pred hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
-.++++|++... ....+|. +..+++|++|+|++|.+...+.+..+++|++|+|.++.+.+- + -+.+++.|+
T Consensus 43 l~~L~~L~l~~~-----~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~ 113 (347)
T 4fmz_A 43 LESITKLVVAGE-----KVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLR 113 (347)
T ss_dssp HTTCSEEECCSS-----CCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCS
T ss_pred cccccEEEEeCC-----ccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCC
Confidence 367888888664 2234443 677899999999999775433388999999999999988431 1 268899999
Q ss_pred eeeeeccCCcceeccccccccceEEEecccCCCC-ceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhH
Q 039643 177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSE-LESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQE 250 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~-~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~ 250 (520)
+|++.+|.-.....+.++++|+.|+++++..... ......++|++|.+.. ...+..+++|++++++++.+++..
T Consensus 114 ~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 114 ELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp EEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG
T ss_pred EEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc
Confidence 9999998632222255689999999999854221 1234578999999862 223678999999999988776422
Q ss_pred HHHHHhCCcccceeecccccccccc-ccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCCCcccccccC-CCcE
Q 039643 251 FHELISKFPLLEDLSVSSSQPLERV-KFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN 327 (520)
Q Consensus 251 ~~~ll~~l~~L~~L~L~~~~~l~~~-~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~ 327 (520)
.+..+++|+.|.++++...... ...+++|++|++++|.... ..+..+|+|+.|++.++.+..+ ..+.. ..++
T Consensus 194 ---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 268 (347)
T 4fmz_A 194 ---PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLK 268 (347)
T ss_dssp ---GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred ---cccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcC
Confidence 1788999999999987642211 2346789999998864432 3378899999999999877654 22222 2244
Q ss_pred -EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643 328 -VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV 396 (520)
Q Consensus 328 -v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~ 396 (520)
+.+.++.+.+- ..+.+++.|+.|.+.. +......+..+. .++ .|++|.+..
T Consensus 269 ~L~l~~n~l~~~---------~~~~~l~~L~~L~L~~-n~l~~~~~~~l~-------~l~-~L~~L~L~~ 320 (347)
T 4fmz_A 269 MLNVGSNQISDI---------SVLNNLSQLNSLFLNN-NQLGNEDMEVIG-------GLT-NLTTLFLSQ 320 (347)
T ss_dssp EEECCSSCCCCC---------GGGGGCTTCSEEECCS-SCCCGGGHHHHH-------TCT-TCSEEECCS
T ss_pred EEEccCCccCCC---------hhhcCCCCCCEEECcC-CcCCCcChhHhh-------ccc-cCCEEEccC
Confidence 44555555432 2357888999999884 332333333332 246 888888873
No 6
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.39 E-value=5.7e-12 Score=133.70 Aligned_cols=143 Identities=19% Similarity=0.179 Sum_probs=63.0
Q ss_pred cccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEE
Q 039643 122 IYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMV 201 (520)
Q Consensus 122 l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~ 201 (520)
+..+++|++|+|++|.+...+.+.++++|++|+|.++.+.+-. . +++++.|+.|++.+|.......+.++++|+.|+
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 140 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 140 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEE
Confidence 3445555666665554432112555555666665555542111 0 455555555555555311111133455555555
Q ss_pred EecccCCCCceeeeCCceeEEEecc----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 202 IVDYSRSSELESIVAPSLQQLTLVR----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 202 I~~~~~~~~~~~i~aP~L~~L~l~~----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
++++....-......++|+.|.+.. ...+.++++|++|+++++.++.. ..+..+++|+.|.++++.
T Consensus 141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC
T ss_pred CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC---hhhccCCCCCEEEecCCc
Confidence 5555421111112334455554431 11234445555555544443321 123444555555554443
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.38 E-value=1.3e-11 Score=131.01 Aligned_cols=243 Identities=13% Similarity=0.112 Sum_probs=146.9
Q ss_pred hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
-.++++|++... ....+|+ +..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+-. . +..++.|+
T Consensus 67 l~~L~~L~Ls~n-----~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~ 137 (466)
T 1o6v_A 67 LNNLTQINFSNN-----QLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLN 137 (466)
T ss_dssp CTTCCEEECCSS-----CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCS
T ss_pred hcCCCEEECCCC-----ccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCC
Confidence 467899988664 2234455 7788999999999987744233788999999999988873211 1 67889999
Q ss_pred eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHH
Q 039643 177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEF 251 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~ 251 (520)
.|++.+|.....-.+.++++|+.|.+........ .....++|+.|.+.. ...+..+++|++|+++++.+++...
T Consensus 138 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 138 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred EEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc
Confidence 9999988522111344577888888764332111 123457777777752 2235667777888777766654221
Q ss_pred HHHHhCCcccceeecccccccc-ccccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCCCcccccccC-CCcE-
Q 039643 252 HELISKFPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN- 327 (520)
Q Consensus 252 ~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~- 327 (520)
++.+++|+.|.++++..-. +.-..+++|++|++++|.... ..+..+|+|+.|+++++.+..+ .. +.. ..++
T Consensus 217 ---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~ 291 (466)
T 1o6v_A 217 ---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-SP-LAGLTALTN 291 (466)
T ss_dssp ---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSE
T ss_pred ---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc-cc-ccCCCccCe
Confidence 5667777777777765311 111234567777777653322 2256677777777777765543 11 111 1232
Q ss_pred EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643 328 VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL 363 (520)
Q Consensus 328 v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~ 363 (520)
+.+..+.+.+-. . +.+++.|+.|.+..
T Consensus 292 L~L~~n~l~~~~--------~-~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 292 LELNENQLEDIS--------P-ISNLKNLTYLTLYF 318 (466)
T ss_dssp EECCSSCCSCCG--------G-GGGCTTCSEEECCS
T ss_pred EEcCCCcccCch--------h-hcCCCCCCEEECcC
Confidence 334444444321 1 45667777777663
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=139.18 Aligned_cols=276 Identities=16% Similarity=0.071 Sum_probs=179.3
Q ss_pred CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.+++.|++... ....+ |..+..+++|++|+|++|.+.. |..+.++++|++|+|+++.+.. .....+.+++.
T Consensus 32 ~~l~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKN-----RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCSS-----CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTT
T ss_pred CCCcEEECCCC-----ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc-cCcccccCCCC
Confidence 56888888664 12233 4567778999999999986633 5678899999999999887632 11123567899
Q ss_pred cceeeeeccCCcc--eeccccccccceEEEecccCCC--CceeeeCCceeEEEecc-------ccccCCCCCcceEEecc
Q 039643 175 LEDLSLRYTLGLK--FFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSE 243 (520)
Q Consensus 175 LE~L~L~~c~~l~--~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~ 243 (520)
|+.|+|.++.... .-.+.++++|+.|++.++.... +......++|+.|.+.. ...+.++++|+.|++..
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 9999999886322 2234568899999999876321 11223468899998862 12367888999999988
Q ss_pred cccchhHHHHHHhCCcccceeeccccccccccc---cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcc
Q 039643 244 IVLEDQEFHELISKFPLLEDLSVSSSQPLERVK---FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTIS 317 (520)
Q Consensus 244 ~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~---~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~ 317 (520)
+.++.. ....+.++++|+.|.++++..+.... ....+|++|+++++.-.. ..+..+++|+.|+++++.+..+.
T Consensus 186 n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 186 LNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp CCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred CcCcEe-ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC
Confidence 766542 22356788999999999877543222 223489999998864322 46688999999999998766431
Q ss_pred cccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643 318 ISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI 395 (520)
Q Consensus 318 ~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~ 395 (520)
...+.. ..|+ +.+..+.+.+.. ...+.+++.|+.|.+.. +....++.. .-..++ .|++|.+.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~L~~--N~l~~~~~~------~~~~l~-~L~~L~l~ 328 (477)
T 2id5_A 265 GSMLHELLRLQEIQLVGGQLAVVE-------PYAFRGLNYLRVLNVSG--NQLTTLEES------VFHSVG-NLETLILD 328 (477)
T ss_dssp TTSCTTCTTCCEEECCSSCCSEEC-------TTTBTTCTTCCEEECCS--SCCSCCCGG------GBSCGG-GCCEEECC
T ss_pred hhhccccccCCEEECCCCccceEC-------HHHhcCcccCCEEECCC--CcCceeCHh------HcCCCc-ccCEEEcc
Confidence 111221 1243 445555555331 23456788899998884 332223221 122346 88888887
Q ss_pred E
Q 039643 396 V 396 (520)
Q Consensus 396 ~ 396 (520)
.
T Consensus 329 ~ 329 (477)
T 2id5_A 329 S 329 (477)
T ss_dssp S
T ss_pred C
Confidence 3
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.36 E-value=5.2e-13 Score=150.65 Aligned_cols=196 Identities=17% Similarity=0.108 Sum_probs=108.2
Q ss_pred ccCcccccCCCccEEEEeccccC--CCc--ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcce--ec
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLD--EPL--IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKF--FS 190 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~--~p~--~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~--l~ 190 (520)
.+|..+..+++|++|+|++|.+. .|. .+..+++|++|+|+++.+.......++..++.|++|++++|..... ..
T Consensus 91 ~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 35566666677777777776553 233 5666677777777666552111111224566677777666642111 11
Q ss_pred ---cccccccceEEEecccCCCCceeeeCCceeEEEecc------ccccCCCCCcceEEecccccchhHHHHHHhCCccc
Q 039643 191 ---VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLL 261 (520)
Q Consensus 191 ---I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L 261 (520)
+.++++|+.|+++++...........++|++|.+.. ...+.++++|++|+++++.+++. +...++++++|
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L 249 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTEL 249 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSC
T ss_pred hhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCC
Confidence 344667777777666531111113456777777641 12256777778888777776543 33556777778
Q ss_pred ceeeccccccccccc-cccccccEEEeecCCchh----HHhcCCCCccEeEecccCC
Q 039643 262 EDLSVSSSQPLERVK-FSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 262 ~~L~L~~~~~l~~~~-~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~~~~ 313 (520)
+.|.+++|......+ ..+.+|++|++.+|.... .+...+++|+.|+++++.+
T Consensus 250 ~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp CEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred CEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence 888777765422111 145567777766543221 1212246667776666644
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.35 E-value=3.9e-12 Score=140.54 Aligned_cols=273 Identities=8% Similarity=0.010 Sum_probs=178.8
Q ss_pred CCceEEEEEecCCCCCcccc-----------------cCcccc--cCCCccEEEEecccc--CCCcccCCCCCCCEEEec
Q 039643 98 NGVKELHIVVESSPHESAYT-----------------LPQAIY--SAKLLTTLVLNGCRL--DEPLIAINLNSLKNLSLQ 156 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~-----------------LP~~l~--~~~sL~~L~L~~c~l--~~p~~~~~l~sLk~L~L~ 156 (520)
.++++|++.... .... +|..+. .+++|++|+|++|.+ ..|..+.++++|++|+|+
T Consensus 206 ~~L~~L~Ls~n~----l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 206 TKLRQFYMGNSP----FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp TTCCEEEEESCC----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred cCCCEEECcCCc----cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 689999998752 1111 899999 999999999999965 347889999999999999
Q ss_pred cee-cChHHHHHHHh------cCCCcceeeeeccCCcc-ee--ccccccccceEEEecccCC--CCceeeeCCceeEEEe
Q 039643 157 RVY-ANEQMVHNLIA------ECCSLEDLSLRYTLGLK-FF--SVSKAHKLKNMVIVDYSRS--SELESIVAPSLQQLTL 224 (520)
Q Consensus 157 ~v~-~~~~~l~~Lls------~CP~LE~L~L~~c~~l~-~l--~I~~~~~Lk~L~I~~~~~~--~~~~~i~aP~L~~L~l 224 (520)
++. +.+..++.-+. .++.|+.|++.+|.... +- .+.++++|+.|+++++... .+ .....++|++|.+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 998 66534444333 46999999999986322 11 3556899999999998742 12 2234578888887
Q ss_pred cc------ccccCCCCC-cceEEecccccchhHHHHHHhC--Ccccceeecccccccccccc----------ccccccEE
Q 039643 225 VR------VIVVATCPN-LKKLHLSEIVLEDQEFHELISK--FPLLEDLSVSSSQPLERVKF----------SSNLLKRV 285 (520)
Q Consensus 225 ~~------~~~~~~l~~-L~~L~L~~~~~~~~~~~~ll~~--l~~L~~L~L~~~~~l~~~~~----------~f~~L~~L 285 (520)
.. +..+..+++ |++|+++++.++. +...+.. +++|+.|.++++......+. ...+|++|
T Consensus 361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CSSEEEECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCccccccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 52 335677888 9999999887762 2233344 34899999998774221111 23478999
Q ss_pred EeecCCchh---HHhcCCCCccEeEecccCCCCcccccccCC--------CcE-EEEeccccccChhhHHHHHHHHH--h
Q 039643 286 AFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQC--------PWN-VFFVHEHDVGDIDNWYLKLKEFL--G 351 (520)
Q Consensus 286 ~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~~--------~L~-v~~~~~~~~g~~~~l~~~~~~~l--~ 351 (520)
+++++.-.. ..+..+|+|+.|+++++.+..+........ .++ +.+..+.+. ++ ...+ .
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l-------p~~~~~~ 510 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL-------SDDFRAT 510 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC-------CGGGSTT
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-cc-------Chhhhhc
Confidence 998754322 555678999999999887664311111110 233 445555555 22 2223 3
Q ss_pred ccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643 352 ASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI 395 (520)
Q Consensus 352 n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~ 395 (520)
+++.|+.|.+.. +...+ ++..+. .++ .|++|.+.
T Consensus 511 ~l~~L~~L~Ls~-N~l~~-ip~~~~-------~l~-~L~~L~Ls 544 (636)
T 4eco_A 511 TLPYLVGIDLSY-NSFSK-FPTQPL-------NSS-TLKGFGIR 544 (636)
T ss_dssp TCTTCCEEECCS-SCCSS-CCCGGG-------GCS-SCCEEECC
T ss_pred cCCCcCEEECCC-CCCCC-cChhhh-------cCC-CCCEEECC
Confidence 777888888774 22222 444432 245 67777763
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.35 E-value=1.6e-12 Score=142.04 Aligned_cols=274 Identities=18% Similarity=0.106 Sum_probs=182.8
Q ss_pred CceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 99 GVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 99 ~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.+++|++... ....+|+ .+..+++|++|+|++|.+. .|..+.++++|++|+|.++.+.+ .....+.++|.|+
T Consensus 255 ~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 255 SVESINLQKH-----YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLT 328 (606)
T ss_dssp EEEEEECTTC-----CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSB-GGGGCGGGCTTCS
T ss_pred ceeEEEeecC-----ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCc-CchhhhhccCcCC
Confidence 5777776543 2334544 4667899999999999774 47788899999999999998742 1123467899999
Q ss_pred eeeeeccCCcc---eeccccccccceEEEecccCCC----CceeeeCCceeEEEecc-------ccccCCCCCcceEEec
Q 039643 177 DLSLRYTLGLK---FFSVSKAHKLKNMVIVDYSRSS----ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLS 242 (520)
Q Consensus 177 ~L~L~~c~~l~---~l~I~~~~~Lk~L~I~~~~~~~----~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~ 242 (520)
.|++.+|.... .-.+.++++|+.|+++++.... .......++|++|.+.. +..+..+++|++|+++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 99999986322 2235568999999999987421 11123568999999862 3356789999999999
Q ss_pred ccccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecCCchh------HHhcCCCCccEeEecccCC
Q 039643 243 EIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR------AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 243 ~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~------~lL~~~P~L~~L~l~~~~~ 313 (520)
++.+++......++++++|+.|.++++.... +. -..+++|++|+++++.... ..+..+++|+.|+++++.+
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 8877643333457889999999999987522 11 1236789999998865322 3467899999999999877
Q ss_pred CCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccc
Q 039643 314 PTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGN 391 (520)
Q Consensus 314 ~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~ 391 (520)
..+....+.. ..++ +.+..+.+.+.+ ...+.+++.| .|.+.. +...+..+..+. .++ .|++
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~l~~L-~L~L~~-N~l~~~~~~~~~-------~l~-~L~~ 551 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSS-------IEALSHLKGI-YLNLAS-NHISIILPSLLP-------ILS-QQRT 551 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGG-------GGGGTTCCSC-EEECCS-SCCCCCCGGGHH-------HHH-TSSE
T ss_pred CccChhhhccccCCCEEECCCCccCcCC-------hhHhCccccc-EEECcC-CcccccCHhhcc-------cCC-CCCE
Confidence 6431111222 2244 556677766543 2344566666 555553 232333333332 246 7888
Q ss_pred eEEE
Q 039643 392 MRLI 395 (520)
Q Consensus 392 L~l~ 395 (520)
|.+.
T Consensus 552 L~l~ 555 (606)
T 3t6q_A 552 INLR 555 (606)
T ss_dssp EECT
T ss_pred EeCC
Confidence 8887
No 12
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=1.8e-12 Score=130.90 Aligned_cols=215 Identities=19% Similarity=0.247 Sum_probs=128.1
Q ss_pred HHHHHHHh-CCceEEEEEecCCCCCcccccCcccccC--CCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHH
Q 039643 90 KWIGLAVG-NGVKELHIVVESSPHESAYTLPQAIYSA--KLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMV 165 (520)
Q Consensus 90 ~Wl~~a~~-~~VkeL~L~~~~~~~~~~~~LP~~l~~~--~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l 165 (520)
+|-..+.. ..++.+++.... .. |..+... +.++.|+++++.+.. ++....+++|++|+|+++.+++..+
T Consensus 38 ~W~~~~~~~~~~~~l~l~~~~------~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 38 RWYRLASDESLWQTLDLTGKN------LH-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp HHHHHHTCSTTSSEEECTTCB------CC-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred HHHHHhcCchhheeecccccc------CC-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHH
Confidence 45555443 235666553320 00 3333444 677777777765532 3445667777777777777766667
Q ss_pred HHHHhcCCCcceeeeeccCCcc--eeccccccccceEEEecccCCCC----ceeeeCCceeEEEeccc---------ccc
Q 039643 166 HNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKNMVIVDYSRSSE----LESIVAPSLQQLTLVRV---------IVV 230 (520)
Q Consensus 166 ~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~L~I~~~~~~~~----~~~i~aP~L~~L~l~~~---------~~~ 230 (520)
...+.+||.|+.|++.+|.... .-.+.++++|++|++++|..... ...-..|+|++|.+.+. ..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 7777777777777777774211 11233467777777777732111 11223566666665421 113
Q ss_pred CCCC-CcceEEeccc--ccchhHHHHHHhCCcccceeecccccccccc----ccccccccEEEeecCCchh----HHhcC
Q 039643 231 ATCP-NLKKLHLSEI--VLEDQEFHELISKFPLLEDLSVSSSQPLERV----KFSSNLLKRVAFLFCRSLR----AVDLD 299 (520)
Q Consensus 231 ~~l~-~L~~L~L~~~--~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~----~~~f~~L~~L~L~~c~~l~----~lL~~ 299 (520)
..++ +|++|+++++ .+++..+...+.++++|+.|++++|..+... -..+++|++|++++|.... ..+..
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 270 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 270 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence 5677 8888888776 4555556667777888888888877642211 1234678888887775332 24566
Q ss_pred CCCccEeEeccc
Q 039643 300 TPNLLSFTFESV 311 (520)
Q Consensus 300 ~P~L~~L~l~~~ 311 (520)
+|+|+.|++.++
T Consensus 271 ~~~L~~L~l~~~ 282 (336)
T 2ast_B 271 IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEeccCc
Confidence 788888888766
No 13
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=5.9e-14 Score=141.83 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=53.4
Q ss_pred cCCCCCcceEEecccc-cchhHHHHHHhCCcccceeeccccccccccc----cccccccEEEeecCCchh---HHhcCCC
Q 039643 230 VATCPNLKKLHLSEIV-LEDQEFHELISKFPLLEDLSVSSSQPLERVK----FSSNLLKRVAFLFCRSLR---AVDLDTP 301 (520)
Q Consensus 230 ~~~l~~L~~L~L~~~~-~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~----~~f~~L~~L~L~~c~~l~---~lL~~~P 301 (520)
+..+++|++|+++++. +++..+ ..+.++++|+.|.+++|..+.+.+ ..+++|++|++.+|-... .+...+
T Consensus 218 ~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l- 295 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL- 295 (336)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHS-
T ss_pred HhhCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhC-
Confidence 3568899999998877 555433 356788999999999886443221 246789999998872211 222334
Q ss_pred CccEeEecccCCCC
Q 039643 302 NLLSFTFESVRIPT 315 (520)
Q Consensus 302 ~L~~L~l~~~~~~~ 315 (520)
+.|++..+.+..
T Consensus 296 --~~L~l~~n~l~~ 307 (336)
T 2ast_B 296 --PHLQINCSHFTT 307 (336)
T ss_dssp --TTSEESCCCSCC
T ss_pred --cceEEecccCcc
Confidence 445577776554
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.33 E-value=2.7e-12 Score=140.22 Aligned_cols=236 Identities=13% Similarity=0.028 Sum_probs=163.6
Q ss_pred CccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccccceEEE
Q 039643 127 LLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVI 202 (520)
Q Consensus 127 sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I 202 (520)
+|++|+++++.+.. +..+..+++|++|+|+++.+. .++.-+.+++.|+.|++.+|.. .....+.++++|+.|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 79999999987743 344789999999999999874 2223367899999999999863 22334566899999999
Q ss_pred ecccCCC---CceeeeCCceeEEEecc---------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 203 VDYSRSS---ELESIVAPSLQQLTLVR---------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 203 ~~~~~~~---~~~~i~aP~L~~L~l~~---------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
.++.... .......++|++|.+.. +..+..+++|++|+++++.+++. ....+.++++|+.|+++++.
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECTTCC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECCCCc
Confidence 9986421 11133578999999862 23578899999999998876542 23457889999999999987
Q ss_pred ccc--cc--ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCccc---ccccC-CCcE-EEEeccccccC
Q 039643 271 PLE--RV--KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISI---SASHQ-CPWN-VFFVHEHDVGD 338 (520)
Q Consensus 271 ~l~--~~--~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~---~~l~~-~~L~-v~~~~~~~~g~ 338 (520)
... +. -..+++|+.|++++|.... ..+..+|+|+.|+++++.+..... ..+.. ..++ +.+.++.+.+.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 522 11 1245789999998865422 456789999999999997653100 11111 1244 45566666543
Q ss_pred hhhHHHHHHHHHhccccccceEEEecccccccccc
Q 039643 339 IDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPF 373 (520)
Q Consensus 339 ~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~ 373 (520)
+ ...+.+++.|+.|.+.. +...+..+.
T Consensus 492 ~-------~~~~~~l~~L~~L~Ls~-N~l~~~~~~ 518 (606)
T 3t6q_A 492 D-------QHAFTSLKMMNHVDLSH-NRLTSSSIE 518 (606)
T ss_dssp C-------TTTTTTCTTCCEEECCS-SCCCGGGGG
T ss_pred C-------hhhhccccCCCEEECCC-CccCcCChh
Confidence 2 23457889999999985 333343333
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.32 E-value=3.3e-12 Score=139.60 Aligned_cols=254 Identities=14% Similarity=0.061 Sum_probs=173.4
Q ss_pred cccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEE
Q 039643 122 IYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMV 201 (520)
Q Consensus 122 l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~ 201 (520)
+..+++|+.|+++++.+...+.+..+++|++|++.++.+. .++.+ .+|.|+.|++.+|.......+.++++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 6667899999999987754337788999999999999872 23333 8999999999999766666666789999999
Q ss_pred EecccCCC----CceeeeCCceeEEEecc------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc
Q 039643 202 IVDYSRSS----ELESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP 271 (520)
Q Consensus 202 I~~~~~~~----~~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~ 271 (520)
++++.... +......++|++|.+.. +..+..+++|++|+++++.+++......+.++++|+.|++++|..
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 99886311 11123568999999862 345678999999999988776533324678899999999999875
Q ss_pred cccc---ccccccccEEEeecCCchh----HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhH
Q 039643 272 LERV---KFSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNW 342 (520)
Q Consensus 272 l~~~---~~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l 342 (520)
.... -..+++|++|++.++.... ..+..+++|+.|+++++.+..+....+.. ..++ +.+.++.+.+.+
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--- 513 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD--- 513 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE---
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC---
Confidence 3211 1245789999998764322 34577899999999998765431111222 1243 455666666542
Q ss_pred HHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643 343 YLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI 395 (520)
Q Consensus 343 ~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~ 395 (520)
...+.+++.|+.|.+.. +....++..+.. +|.+|++|.+.
T Consensus 514 ----~~~~~~l~~L~~L~l~~--N~l~~~p~~~~~-------l~~~L~~l~l~ 553 (606)
T 3vq2_A 514 ----SSHYNQLYSLSTLDCSF--NRIETSKGILQH-------FPKSLAFFNLT 553 (606)
T ss_dssp ----GGGTTTCTTCCEEECTT--SCCCCEESCGGG-------SCTTCCEEECC
T ss_pred ----HHHccCCCcCCEEECCC--CcCcccCHhHhh-------hcccCcEEEcc
Confidence 33456788888888874 433344444332 22047777777
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.32 E-value=8.7e-12 Score=140.67 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=99.5
Q ss_pred ccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEE
Q 039643 123 YSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMV 201 (520)
Q Consensus 123 ~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~ 201 (520)
..+++|++|+|++|.+.. ++.+..+++|++|+|.++.+.+ .+...+..|+.|+.|++.+|..........+++|++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 567889999998886633 3448889999999999988753 34556788999999999988632222222478888888
Q ss_pred EecccCC--CCceeee-CCceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 202 IVDYSRS--SELESIV-APSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 202 I~~~~~~--~~~~~i~-aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
+.++... .+..... .++|++|.+.. +..+.++++|++|+++.+.+++......+.++++|+.|.++++.
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 8887631 1111122 37888887752 33466777888888877766543344456677777777777664
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.30 E-value=2.3e-11 Score=128.02 Aligned_cols=279 Identities=14% Similarity=0.068 Sum_probs=161.9
Q ss_pred CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHH-HHHhcCC
Q 039643 98 NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVH-NLIAECC 173 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~-~Lls~CP 173 (520)
.+++.|++.... ....+ |..+..+++|++|+|++|.+.. |..+.++++|++|+|.++.+.+.... ..+..++
T Consensus 54 ~~L~~L~L~~n~----~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 54 QDLQFLKVEQQT----PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TTCCEEECCCCS----TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred ccccEEECcCCc----ccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 456666665431 11133 3445567778888887776532 45667778888888887776432222 2356678
Q ss_pred CcceeeeeccCC--cceec-cccccccceEEEecccCCC--Cc--eeeeCCceeEEEeccc---------------cccC
Q 039643 174 SLEDLSLRYTLG--LKFFS-VSKAHKLKNMVIVDYSRSS--EL--ESIVAPSLQQLTLVRV---------------IVVA 231 (520)
Q Consensus 174 ~LE~L~L~~c~~--l~~l~-I~~~~~Lk~L~I~~~~~~~--~~--~~i~aP~L~~L~l~~~---------------~~~~ 231 (520)
.|+.|+|.++.. ..... +.++++|+.|+++++.... +. .....++|+.|.+... ..+.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence 888888887752 21111 4457788888887776321 11 1122357777776421 0123
Q ss_pred CCCCcceEEecccccchhHHHHHHh--CCcccceeecccccccc------------c---cccccccccEEEeecCCchh
Q 039643 232 TCPNLKKLHLSEIVLEDQEFHELIS--KFPLLEDLSVSSSQPLE------------R---VKFSSNLLKRVAFLFCRSLR 294 (520)
Q Consensus 232 ~l~~L~~L~L~~~~~~~~~~~~ll~--~l~~L~~L~L~~~~~l~------------~---~~~~f~~L~~L~L~~c~~l~ 294 (520)
.+++|++|+++++.+++.....+.. ..++++.|.++++.... . .+....+|++|+++++....
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence 4578999999988887654433332 23788888888764311 0 01123578888888754322
Q ss_pred ---HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEecccccc
Q 039643 295 ---AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIR 369 (520)
Q Consensus 295 ---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~ 369 (520)
..+..+++|+.|+++++.+..+....+.. ..++ +.+..+.+.+.+ ...+.+++.|+.|.+.. +....
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~Ls~-N~l~~ 361 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-------SRMFENLDKLEVLDLSY-NHIRA 361 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-------GGGGTTCTTCCEEECCS-SCCCE
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-------hhHhcCcccCCEEECCC-Ccccc
Confidence 45677889999999888766431111211 1243 445555554331 33457788888888874 22222
Q ss_pred ccccccccccccCCCCcccccceEEEE
Q 039643 370 QMPFDLEEFKNRSPSLPFQVGNMRLIV 396 (520)
Q Consensus 370 ~i~~~L~~~p~asp~l~~~l~~L~l~~ 396 (520)
..+ .+-..++ .|++|.+..
T Consensus 362 ~~~-------~~~~~l~-~L~~L~L~~ 380 (455)
T 3v47_A 362 LGD-------QSFLGLP-NLKELALDT 380 (455)
T ss_dssp ECT-------TTTTTCT-TCCEEECCS
T ss_pred cCh-------hhccccc-cccEEECCC
Confidence 222 2333456 888888874
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.29 E-value=7.3e-12 Score=129.50 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=58.8
Q ss_pred Ccccceeeccccccccc-cccccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCccccccc-CCCcE-EEEe
Q 039643 258 FPLLEDLSVSSSQPLER-VKFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASH-QCPWN-VFFV 331 (520)
Q Consensus 258 l~~L~~L~L~~~~~l~~-~~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~-~~~L~-v~~~ 331 (520)
.++|+.|.++++..-.. .-..+++|++|+++++.... ..+..+|+|+.|+++++.+..+ ..... ...++ +.+.
T Consensus 225 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLS 303 (390)
T ss_dssp CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECC
T ss_pred cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECC
Confidence 35666666666543211 11234567777776643221 4456677777777777765543 11111 11233 3445
Q ss_pred ccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643 332 HEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI 395 (520)
Q Consensus 332 ~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~ 395 (520)
++.+.+- ...+.+++.|+.|.+.. +....+ + ...++ .|++|.+.
T Consensus 304 ~n~l~~~--------~~~~~~l~~L~~L~L~~--N~i~~~-------~--~~~~~-~L~~L~l~ 347 (390)
T 3o6n_A 304 HNHLLHV--------ERNQPQFDRLENLYLDH--NSIVTL-------K--LSTHH-TLKNLTLS 347 (390)
T ss_dssp SSCCCCC--------GGGHHHHTTCSEEECCS--SCCCCC-------C--CCTTC-CCSEEECC
T ss_pred CCcceec--------CccccccCcCCEEECCC--Ccccee-------C--chhhc-cCCEEEcC
Confidence 5554432 11234567777777763 321111 1 22345 77777777
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.28 E-value=9.5e-12 Score=132.04 Aligned_cols=262 Identities=13% Similarity=0.019 Sum_probs=175.3
Q ss_pred ccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceec
Q 039643 115 AYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFS 190 (520)
Q Consensus 115 ~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~ 190 (520)
...+|..+. ++|++|+|+++.+.. +..+.++++|++|+|+++.+.+ .....+.+++.|+.|+|.++.- +..-.
T Consensus 23 l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 99 (477)
T 2id5_A 23 FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99 (477)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred cCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCccc
Confidence 345676553 589999999987743 4578899999999999987732 1122357899999999999852 21122
Q ss_pred cccccccceEEEecccCCC--CceeeeCCceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCccc
Q 039643 191 VSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLL 261 (520)
Q Consensus 191 I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L 261 (520)
+.++++|+.|+++++.... +...-..++|++|.+.. +..+.++++|++|+++.+.++. .....+.++++|
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L 178 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGL 178 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTC
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCC
Confidence 4568999999999987421 11223568999999862 3357889999999999887764 234568899999
Q ss_pred ceeecccccccc--cc-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEecc
Q 039643 262 EDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHE 333 (520)
Q Consensus 262 ~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~ 333 (520)
+.|.+.++..-. +. -..+.+|++|++++|.... ......++|+.|+++++.+..+....+.. ..|+ +.+.++
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 999999877422 11 1235689999999875543 22234459999999998776541111222 2243 445555
Q ss_pred ccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643 334 HDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV 396 (520)
Q Consensus 334 ~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~ 396 (520)
.+.+.. ...+.+++.|+.|.+.. +......+ .+-..++ .|++|.+..
T Consensus 259 ~l~~~~-------~~~~~~l~~L~~L~L~~-n~l~~~~~-------~~~~~l~-~L~~L~L~~ 305 (477)
T 2id5_A 259 PISTIE-------GSMLHELLRLQEIQLVG-GQLAVVEP-------YAFRGLN-YLRVLNVSG 305 (477)
T ss_dssp CCCEEC-------TTSCTTCTTCCEEECCS-SCCSEECT-------TTBTTCT-TCCEEECCS
T ss_pred cCCccC-------hhhccccccCCEEECCC-CccceECH-------HHhcCcc-cCCEEECCC
Confidence 555331 23456788899998874 23222222 2333457 888888874
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=2.4e-11 Score=138.28 Aligned_cols=217 Identities=11% Similarity=0.031 Sum_probs=149.3
Q ss_pred CCceEEEEEecCCCCC----ccc---------ccCcccc--cCCCccEEEEecccc--CCCcccCCCCCCCEEEeccee-
Q 039643 98 NGVKELHIVVESSPHE----SAY---------TLPQAIY--SAKLLTTLVLNGCRL--DEPLIAINLNSLKNLSLQRVY- 159 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~----~~~---------~LP~~l~--~~~sL~~L~L~~c~l--~~p~~~~~l~sLk~L~L~~v~- 159 (520)
.+++.|+|........ ... .+|..+. .+++|++|+|++|.+ ..|..+.++++|+.|+|+++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 6899999987521000 000 3899987 999999999999865 347889999999999999998
Q ss_pred cChHHHHHHH-------hcCCCcceeeeeccCCcc-ee--ccccccccceEEEecccCCCCceeeeCCceeEEEecc---
Q 039643 160 ANEQMVHNLI-------AECCSLEDLSLRYTLGLK-FF--SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR--- 226 (520)
Q Consensus 160 ~~~~~l~~Ll-------s~CP~LE~L~L~~c~~l~-~l--~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~--- 226 (520)
+.+..++.-+ ..+|.|+.|+|.+|.... +- .+.++++|+.|+++++....-......++|+.|.+..
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCcc
Confidence 6652333322 356799999999986332 11 3556899999999998753111223568899998862
Q ss_pred ---ccccCCCCC-cceEEecccccchhHHHHHHhCCc--ccceeecccccccccc---c-----cccccccEEEeecCCc
Q 039643 227 ---VIVVATCPN-LKKLHLSEIVLEDQEFHELISKFP--LLEDLSVSSSQPLERV---K-----FSSNLLKRVAFLFCRS 292 (520)
Q Consensus 227 ---~~~~~~l~~-L~~L~L~~~~~~~~~~~~ll~~l~--~L~~L~L~~~~~l~~~---~-----~~f~~L~~L~L~~c~~ 292 (520)
+..+..+++ |+.|+++++.++. +...+..++ +|+.|.++++...... . ....+|+.|+|+++..
T Consensus 608 ~~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L 685 (876)
T 4ecn_A 608 EEIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685 (876)
T ss_dssp SCCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC
T ss_pred ccchHHHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC
Confidence 334677888 9999999887762 223444444 4999999887642211 1 1224788999887543
Q ss_pred hh---HHhcCCCCccEeEecccCCCCc
Q 039643 293 LR---AVDLDTPNLLSFTFESVRIPTI 316 (520)
Q Consensus 293 l~---~lL~~~P~L~~L~l~~~~~~~~ 316 (520)
.. .+...+|+|+.|+++++.+..+
T Consensus 686 ~~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 686 QKFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp CSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred CccCHHHHccCCCCCEEECCCCcCCcc
Confidence 22 4556788999999988876643
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.27 E-value=1.2e-11 Score=124.52 Aligned_cols=211 Identities=16% Similarity=0.085 Sum_probs=136.5
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEec-ccc--CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNG-CRL--DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~-c~l--~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.+|++|++.... -...+.+|..+..+++|++|+|++ +.+ ..|..+..+++|++|+|+++.+.+ .++..+..++.
T Consensus 50 ~~l~~L~L~~~~--l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLN--LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCC--CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTT
T ss_pred ceEEEEECCCCC--ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCC
Confidence 579999997752 112237899999999999999995 555 347788999999999999987731 22234678899
Q ss_pred cceeeeeccCC--cceeccccccccceEEEecccCC--CCceeeeCC-ceeEEEecc-------ccccCCCCCcceEEec
Q 039643 175 LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRS--SELESIVAP-SLQQLTLVR-------VIVVATCPNLKKLHLS 242 (520)
Q Consensus 175 LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~--~~~~~i~aP-~L~~L~l~~-------~~~~~~l~~L~~L~L~ 242 (520)
|+.|+++++.. ...-.+.++++|+.|+++++... .+......+ +|++|.+.. +..+..++ |+.|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999852 22234556899999999998742 111122333 677777642 22344454 7777777
Q ss_pred ccccchhHHHHHHhCCcccceeecccccccc--ccccccccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643 243 EIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVKFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 243 ~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~ 313 (520)
++.+++. ....+.++++|+.|.++++.... +.....++|++|+++++.... ..+..+|+|+.|+++++.+
T Consensus 206 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 206 RNMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp SSEEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred CCcccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 7665432 23456677777777777765321 111224567777776643321 3445666777777666643
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.26 E-value=1e-11 Score=136.06 Aligned_cols=248 Identities=14% Similarity=0.097 Sum_probs=124.0
Q ss_pred ccccCCCccEEEEeccccCC-C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccc
Q 039643 121 AIYSAKLLTTLVLNGCRLDE-P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHK 196 (520)
Q Consensus 121 ~l~~~~sL~~L~L~~c~l~~-p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~ 196 (520)
.+..+++|++|+|++|.+.. | ..+.++++|++|+|+++.+.. ....++++++.|+.|+|++|.. +..-.+.++++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 172 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence 44455555555555554422 2 233555555555555554421 1111234555555555555531 11112334555
Q ss_pred cceEEEecccCCCCceeeeCCceeEEEecc--ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccc
Q 039643 197 LKNMVIVDYSRSSELESIVAPSLQQLTLVR--VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLER 274 (520)
Q Consensus 197 Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~ 274 (520)
|+.|+++++.... ......|+|+.|.+.. ...+...++|+.|+++++.++... ....++|+.|.++++..-..
T Consensus 173 L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~----~~~~~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 173 LQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDT 247 (597)
T ss_dssp CCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE----CSCCSCCCEEECCSSCCCCC
T ss_pred CcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc----cccCCCCCEEECCCCCCCCC
Confidence 5556555554210 0111245555555542 112334455666666655443210 01235677777777653221
Q ss_pred c-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHH
Q 039643 275 V-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKE 348 (520)
Q Consensus 275 ~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~ 348 (520)
. -..+++|+.|+|+++.... ..+..+|+|+.|+++++.+..+ ...... ..|+ +.+.++.+.+- ..
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i--------~~ 318 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV--------ER 318 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC--------GG
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc--------Cc
Confidence 1 1235678888887754322 4557788888888888876644 111111 1243 44555655532 22
Q ss_pred HHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643 349 FLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI 395 (520)
Q Consensus 349 ~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~ 395 (520)
.+.+++.|+.|.+.. +....+ + ...++ .|++|.+.
T Consensus 319 ~~~~l~~L~~L~L~~--N~l~~~-------~--~~~~~-~L~~L~l~ 353 (597)
T 3oja_B 319 NQPQFDRLENLYLDH--NSIVTL-------K--LSTHH-TLKNLTLS 353 (597)
T ss_dssp GHHHHTTCSEEECCS--SCCCCC-------C--CCTTC-CCSEEECC
T ss_pred ccccCCCCCEEECCC--CCCCCc-------C--hhhcC-CCCEEEee
Confidence 235678888888874 321111 2 22346 88888887
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.25 E-value=1e-11 Score=123.92 Aligned_cols=222 Identities=14% Similarity=0.051 Sum_probs=146.2
Q ss_pred ccccCcccccCCCccEEEEeccccCC-Ccc-cCCCCCCCEEEecceecCh-HHHHHHHhcCCCcceeeeeccCCcc-eec
Q 039643 115 AYTLPQAIYSAKLLTTLVLNGCRLDE-PLI-AINLNSLKNLSLQRVYANE-QMVHNLIAECCSLEDLSLRYTLGLK-FFS 190 (520)
Q Consensus 115 ~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~-~~~l~sLk~L~L~~v~~~~-~~l~~Lls~CP~LE~L~L~~c~~l~-~l~ 190 (520)
...+|..+. ++|++|+|+++.+.. |.. +.++++|++|+|+++.+.. +.....+.+++.|+.|+++++.... .-.
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 345666543 588999999987643 443 5789999999999887732 1112234568999999998885221 112
Q ss_pred cccccccceEEEecccCCC-C--ceeeeCCceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcc
Q 039643 191 VSKAHKLKNMVIVDYSRSS-E--LESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPL 260 (520)
Q Consensus 191 I~~~~~Lk~L~I~~~~~~~-~--~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~ 260 (520)
+.++++|+.|+++++.... . ......++|++|.+.. +..+..+++|++|+++++.+++......+.++++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 4458899999998875321 1 1233568899988862 2346778999999999887765334456788999
Q ss_pred cceeecccccccc--ccc-cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcccccccC--CCcE-EEEe
Q 039643 261 LEDLSVSSSQPLE--RVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQ--CPWN-VFFV 331 (520)
Q Consensus 261 L~~L~L~~~~~l~--~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~--~~L~-v~~~ 331 (520)
|+.|+++++.... +.. ..+++|++|+++++.... ..+..+|+|+.|+++++.+.......+.. ..++ +.+.
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 9999999886422 111 235689999998754322 35678899999999998776431111221 1343 5566
Q ss_pred ccccccC
Q 039643 332 HEHDVGD 338 (520)
Q Consensus 332 ~~~~~g~ 338 (520)
.+.+.++
T Consensus 257 ~N~~~~~ 263 (306)
T 2z66_A 257 QNDFACT 263 (306)
T ss_dssp TCCEECS
T ss_pred CCCeecc
Confidence 6666654
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.25 E-value=3.7e-11 Score=124.19 Aligned_cols=269 Identities=14% Similarity=0.071 Sum_probs=166.8
Q ss_pred CCceEEEEEecCCCCCcccccCccc-ccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAI-YSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l-~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.+++.|++... ....+|..+ ..+++|++|+|+++.+.. +..+..+++|++|+|+++.+.. .....+.+++.
T Consensus 45 ~~l~~l~l~~~-----~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 118 (390)
T 3o6n_A 45 NNQKIVTFKNS-----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL 118 (390)
T ss_dssp CCCSEEEEESC-----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCceEEEecCC-----chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCC
Confidence 67788887653 234567654 457888888888876633 3467788888888888887632 11223567788
Q ss_pred cceeeeeccCCcc--eeccccccccceEEEecccCCC--CceeeeCCceeEEEecc----ccccCCCCCcceEEeccccc
Q 039643 175 LEDLSLRYTLGLK--FFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR----VIVVATCPNLKKLHLSEIVL 246 (520)
Q Consensus 175 LE~L~L~~c~~l~--~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~----~~~~~~l~~L~~L~L~~~~~ 246 (520)
|+.|++.++.-.. .-.+.++++|+.|+++++.... +......++|++|.+.. ...+..+++|+.++++.+.+
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence 8888888875211 1113457888888888876421 11123457888888752 23456788888888887766
Q ss_pred chhHHHHHHhCCcccceeeccccccccccccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCCCccccccc-CC
Q 039643 247 EDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPTISISASH-QC 324 (520)
Q Consensus 247 ~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~~~~~~l~-~~ 324 (520)
+. +...++|+.|.++++..-.-....+.+|+.|++.++.-.. ..+..+|+|+.|+++++.+..+....+. ..
T Consensus 199 ~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 199 ST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp SE------EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cc------cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 43 2345688888888876422122335689999988754322 5567888999999988876543111111 11
Q ss_pred CcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643 325 PWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV 396 (520)
Q Consensus 325 ~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~ 396 (520)
.++ +.+..+.+.+- .....+++.|+.|.+.. +....++..+. .++ .|++|.+..
T Consensus 273 ~L~~L~L~~n~l~~~--------~~~~~~l~~L~~L~L~~--n~l~~~~~~~~-------~l~-~L~~L~L~~ 327 (390)
T 3o6n_A 273 RLERLYISNNRLVAL--------NLYGQPIPTLKVLDLSH--NHLLHVERNQP-------QFD-RLENLYLDH 327 (390)
T ss_dssp SCCEEECCSSCCCEE--------ECSSSCCTTCCEEECCS--SCCCCCGGGHH-------HHT-TCSEEECCS
T ss_pred cCCEEECCCCcCccc--------CcccCCCCCCCEEECCC--CcceecCcccc-------ccC-cCCEEECCC
Confidence 243 44555554432 12235678888888874 43333443332 346 778888773
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.25 E-value=2.2e-11 Score=123.42 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=151.5
Q ss_pred CCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc-eeccccccccceEEE
Q 039643 125 AKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK-FFSVSKAHKLKNMVI 202 (520)
Q Consensus 125 ~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~~~~~Lk~L~I 202 (520)
...++.|+|+++.+. .|+....+++|++|+|+++.+. .++.-+..++.|+.|+|++|.... .-.+.++++|+.|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 478999999998774 4777888999999999999875 333446789999999999986321 123556899999999
Q ss_pred ecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--ccccccc
Q 039643 203 VDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVKFSSN 280 (520)
Q Consensus 203 ~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~~~f~ 280 (520)
++|.... .+ ...+....+ ...+.++++|++|+++++.++. +...++++++|+.|.++++.... +.-..++
T Consensus 158 ~~n~~~~-~~---p~~~~~~~~--~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~ 229 (328)
T 4fcg_A 158 RACPELT-EL---PEPLASTDA--SGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229 (328)
T ss_dssp EEETTCC-CC---CSCSEEEC---CCCEEESTTCCEEEEEEECCCC--CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT
T ss_pred CCCCCcc-cc---ChhHhhccc--hhhhccCCCCCEEECcCCCcCc--chHhhcCCCCCCEEEccCCCCCcCchhhccCC
Confidence 9986321 00 011211111 1235678999999999888762 33457899999999999987422 2122457
Q ss_pred cccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhcccc
Q 039643 281 LLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQ 355 (520)
Q Consensus 281 ~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~ 355 (520)
+|++|++++|.... ..+..+|+|+.|+++++.........+.. ..|+ +.+.++...+.+ +..+.+++.
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i-------P~~l~~L~~ 302 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-------PSLIAQLPA 302 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC-------CGGGGGSCT
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc-------cHHHhhccC
Confidence 89999999876543 45678999999999997654320111211 2244 556676777765 334677888
Q ss_pred ccceEEE
Q 039643 356 IENLLIN 362 (520)
Q Consensus 356 Le~L~i~ 362 (520)
|+.+.+.
T Consensus 303 L~~l~l~ 309 (328)
T 4fcg_A 303 NCIILVP 309 (328)
T ss_dssp TCEEECC
T ss_pred ceEEeCC
Confidence 8877766
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.24 E-value=3.5e-11 Score=126.56 Aligned_cols=83 Identities=18% Similarity=0.116 Sum_probs=60.7
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--Ccc--cCCCCCCCEEEecceecChHHHHHHHhcCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--PLI--AINLNSLKNLSLQRVYANEQMVHNLIAECC 173 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~--~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP 173 (520)
.++++|++.... .....|..+..+++|++|+|++|.+.. |.. +..+++|++|+|+++.+.+.....++.+++
T Consensus 79 ~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 79 SSLIILKLDYNQ----FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTCCEEECTTCT----TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccCCEEeCCCCc----cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 678889886641 122346777888999999999987753 333 778999999999998874322223467889
Q ss_pred CcceeeeeccC
Q 039643 174 SLEDLSLRYTL 184 (520)
Q Consensus 174 ~LE~L~L~~c~ 184 (520)
.|+.|++.++.
T Consensus 155 ~L~~L~L~~n~ 165 (455)
T 3v47_A 155 RFHVLDLTFNK 165 (455)
T ss_dssp TCCEEECTTCC
T ss_pred cccEEeCCCCc
Confidence 99999998874
No 27
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.23 E-value=1e-11 Score=130.74 Aligned_cols=270 Identities=14% Similarity=0.162 Sum_probs=168.9
Q ss_pred HHH-HHHhCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--C-cccCCCC----CCCEEEecceecCh
Q 039643 91 WIG-LAVGNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--P-LIAINLN----SLKNLSLQRVYANE 162 (520)
Q Consensus 91 Wl~-~a~~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p-~~~~~l~----sLk~L~L~~v~~~~ 162 (520)
|.. ...-+++++|++....-.......+|..+..+++|++|+|+++.+.. + .....++ +|++|+|+++.+++
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence 544 33457899999987521111123567788888999999999986632 1 1223444 79999999998854
Q ss_pred ---HHHHHHHhcCCCcceeeeeccCCc----ceec---cccccccceEEEecccCCCCc------eeeeCCceeEEEecc
Q 039643 163 ---QMVHNLIAECCSLEDLSLRYTLGL----KFFS---VSKAHKLKNMVIVDYSRSSEL------ESIVAPSLQQLTLVR 226 (520)
Q Consensus 163 ---~~l~~Lls~CP~LE~L~L~~c~~l----~~l~---I~~~~~Lk~L~I~~~~~~~~~------~~i~aP~L~~L~l~~ 226 (520)
..+...+..|+.|++|++++|..- ..+. ....++|++|++++|...... ..-..|+|++|.+..
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence 356677889999999999988621 1110 111457999999988642211 112358999998863
Q ss_pred c-------ccc-----CCCCCcceEEecccccchhH---HHHHHhCCcccceeecccccccc----cc----cccccccc
Q 039643 227 V-------IVV-----ATCPNLKKLHLSEIVLEDQE---FHELISKFPLLEDLSVSSSQPLE----RV----KFSSNLLK 283 (520)
Q Consensus 227 ~-------~~~-----~~l~~L~~L~L~~~~~~~~~---~~~ll~~l~~L~~L~L~~~~~l~----~~----~~~f~~L~ 283 (520)
. ..+ ...++|++|+++++.+++.. +...+..+++|+.|.++++..-. .. ....++|+
T Consensus 180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence 1 111 13568999999888776542 45667788999999998876311 01 01256889
Q ss_pred EEEeecCCch-------hHHhcCCCCccEeEecccCCCCcc----ccccc--CCCcE-EEEeccccccChhhHHHHHHHH
Q 039643 284 RVAFLFCRSL-------RAVDLDTPNLLSFTFESVRIPTIS----ISASH--QCPWN-VFFVHEHDVGDIDNWYLKLKEF 349 (520)
Q Consensus 284 ~L~L~~c~~l-------~~lL~~~P~L~~L~l~~~~~~~~~----~~~l~--~~~L~-v~~~~~~~~g~~~~l~~~~~~~ 349 (520)
+|++++|.-. ...+..+|+|+.|+++++.+.... ...+. ...++ +.+..+.+.+.. ...+...
T Consensus 260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~l~~~ 336 (461)
T 1z7x_W 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC---CSHFSSV 336 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG---HHHHHHH
T ss_pred EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH---HHHHHHH
Confidence 9998876331 144556888999999888654210 00011 11343 445555555442 2233556
Q ss_pred HhccccccceEEEe
Q 039643 350 LGASNQIENLLINL 363 (520)
Q Consensus 350 l~n~~~Le~L~i~~ 363 (520)
+.+.+.|+.|.+..
T Consensus 337 l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 337 LAQNRFLLELQISN 350 (461)
T ss_dssp HHHCSSCCEEECCS
T ss_pred HhhCCCccEEEccC
Confidence 67778888888764
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.23 E-value=2.4e-10 Score=116.48 Aligned_cols=238 Identities=14% Similarity=0.082 Sum_probs=164.1
Q ss_pred CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.++++|++... ....+|. .+..+++|++|+|++|.+.. |..+.++++|++|+|+++.+.+ .....+.+++.
T Consensus 52 ~~L~~L~l~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNN-----RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSS 125 (353)
T ss_dssp TTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTT
T ss_pred ccCcEEECCCC-----cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCcc
Confidence 57899998664 2334555 67789999999999987743 4568899999999999998742 22234678999
Q ss_pred cceeeeeccCC--cce-eccccccccceEEEecccCCC---CceeeeCCceeEEEecc-------ccccCCCCCcceEEe
Q 039643 175 LEDLSLRYTLG--LKF-FSVSKAHKLKNMVIVDYSRSS---ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHL 241 (520)
Q Consensus 175 LE~L~L~~c~~--l~~-l~I~~~~~Lk~L~I~~~~~~~---~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L 241 (520)
|+.|++.++.- +.. -.+.++++|+.|+++++.... +......++|++|.+.. +..+..+++|++|++
T Consensus 126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 99999999852 222 234568999999999984211 11123468899998862 345788999999999
Q ss_pred cccccchhHHHHHHhCCcccceeecccccccc--cc----ccccccccEEEeecCCch-------hHHhcCCCCccEeEe
Q 039643 242 SEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV----KFSSNLLKRVAFLFCRSL-------RAVDLDTPNLLSFTF 308 (520)
Q Consensus 242 ~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~----~~~f~~L~~L~L~~c~~l-------~~lL~~~P~L~~L~l 308 (520)
+++.++. ....++..+++|+.|+++++..-. .. ......++.+.+..+.-. ...+..+|+|+.|++
T Consensus 206 ~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 206 HMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp ECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCcccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 9888753 344567789999999999887421 11 112345777777764321 145678999999999
Q ss_pred cccCCCCcccccccC-CCcE-EEEeccccccChhhH
Q 039643 309 ESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNW 342 (520)
Q Consensus 309 ~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l 342 (520)
+++.+..+....+.. ..++ +.+..+.+.++.+.+
T Consensus 285 s~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred CCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 999877541111122 2354 567788888875544
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.21 E-value=1.8e-10 Score=123.52 Aligned_cols=278 Identities=14% Similarity=0.065 Sum_probs=156.0
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.++++|++.... .....|..+..+++|++|+|+++.+.. |.. .+++|++|+|+++.+..-.++..+.+++.|+
T Consensus 45 ~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 45 SKLRILIISHNR----IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp TTCCEEECCSSC----CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred ccccEEecCCCc----cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence 578888876541 122236677778888888888886643 333 7888888888888774322333467788888
Q ss_pred eeeeeccCCcceecccccccc--ceEEEecccC--CC---Cce-------------------------eeeCCceeEEEe
Q 039643 177 DLSLRYTLGLKFFSVSKAHKL--KNMVIVDYSR--SS---ELE-------------------------SIVAPSLQQLTL 224 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~L--k~L~I~~~~~--~~---~~~-------------------------~i~aP~L~~L~l 224 (520)
.|++.++.- ....+.++++| +.|++.++.. .. ..+ .-..++|+.+.+
T Consensus 119 ~L~L~~n~l-~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 119 FLGLSTTHL-EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp EEEEEESSC-CGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred EEEecCccc-chhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence 888888752 22334456677 8888887753 10 000 002455555554
Q ss_pred ccc-------------cccCCCCCcceEEecccccchhHHHHHHh--CCcccceeeccccccccccc--------ccccc
Q 039643 225 VRV-------------IVVATCPNLKKLHLSEIVLEDQEFHELIS--KFPLLEDLSVSSSQPLERVK--------FSSNL 281 (520)
Q Consensus 225 ~~~-------------~~~~~l~~L~~L~L~~~~~~~~~~~~ll~--~l~~L~~L~L~~~~~l~~~~--------~~f~~ 281 (520)
... ..+..+++|+.+++..+.+++..+..+.. ..++|+.|.++++......+ ....+
T Consensus 198 ~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~ 277 (520)
T 2z7x_B 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277 (520)
T ss_dssp EECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE
T ss_pred cccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce
Confidence 321 13566777777777766665543333222 24578888887765321111 11223
Q ss_pred --------------------------ccEEEeecCCchh-HHhcCCCCccEeEecccCCCCcccccccCC-CcE-EEEec
Q 039643 282 --------------------------LKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPTISISASHQC-PWN-VFFVH 332 (520)
Q Consensus 282 --------------------------L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~~~~~~l~~~-~L~-v~~~~ 332 (520)
|+.|.+.++.... .....+|+|+.|+++++.+.......+... .++ +.+.+
T Consensus 278 L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357 (520)
T ss_dssp EEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred eEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence 4444444432211 112678889999998887664201112211 243 45566
Q ss_pred cccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643 333 EHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI 395 (520)
Q Consensus 333 ~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~ 395 (520)
+.+.+ ...+...+.+++.|+.|.+.. +...+.++.. ....++ .|++|.+.
T Consensus 358 N~l~~-----l~~~~~~~~~l~~L~~L~Ls~-N~l~~~l~~~------~~~~l~-~L~~L~Ls 407 (520)
T 2z7x_B 358 NQLKE-----LSKIAEMTTQMKSLQQLDISQ-NSVSYDEKKG------DCSWTK-SLLSLNMS 407 (520)
T ss_dssp SCCCB-----HHHHHHHHTTCTTCCEEECCS-SCCBCCGGGC------SCCCCT-TCCEEECC
T ss_pred CccCc-----cccchHHHhhCCCCCEEECCC-CcCCcccccc------hhccCc-cCCEEECc
Confidence 66553 112356678899999999984 3333323322 122335 66666665
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.20 E-value=3e-11 Score=129.12 Aligned_cols=221 Identities=12% Similarity=0.078 Sum_probs=121.4
Q ss_pred CccEEEEeccccCC--CcccCCCCCCCEEEecceecC-hHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEe
Q 039643 127 LLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYAN-EQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIV 203 (520)
Q Consensus 127 sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~-~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~ 203 (520)
+|++|+|++|.+.. |..+..+++|++|+|+++.+. ... +.+++.|+.|+|++|. +..+. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CCCCC--CCCCcCEEECc
Confidence 55555555554422 234455555555555555542 111 4455555555555553 11111 13556666655
Q ss_pred cccCCCCceeeeCCceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc-cc
Q 039643 204 DYSRSSELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RV 275 (520)
Q Consensus 204 ~~~~~~~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~ 275 (520)
++.... ......|+|++|.+.. +..+..+++|+.|+++++.+++..+..+..++++|+.|+|+++..-. +.
T Consensus 108 ~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 108 NNNISR-VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SSCCCC-EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCcCCC-CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 554311 1111235566665541 23456788888888888877654444455578889999988877422 22
Q ss_pred ccccccccEEEeecCCchh--HHhcCCCCccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHh
Q 039643 276 KFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLG 351 (520)
Q Consensus 276 ~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~ 351 (520)
...+++|++|+|+++.-.. .-+..+|+|+.|+++++.+..+ ...+.. ..++ +.+..+.+.. ..+..++.
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c------~~~~~~~~ 259 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHC------GTLRDFFS 259 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCH------HHHHHHHT
T ss_pred cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcC------cchHHHHH
Confidence 2236788888888753321 3356788899999988877654 111221 1233 3444454441 11345666
Q ss_pred ccccccceEEE
Q 039643 352 ASNQIENLLIN 362 (520)
Q Consensus 352 n~~~Le~L~i~ 362 (520)
..+.|+.+.+.
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 67777766654
No 31
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=2.6e-11 Score=122.02 Aligned_cols=243 Identities=16% Similarity=0.099 Sum_probs=135.4
Q ss_pred cHHHHHHHHHh--CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChH
Q 039643 87 LVDKWIGLAVG--NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQ 163 (520)
Q Consensus 87 ~v~~Wl~~a~~--~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~ 163 (520)
.+...+..... .++++|++... ....+ |..+..+++|++|+|++|.+.....+..+++|++|+|+++.+.+
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~- 94 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGN-----PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE- 94 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTS-----CCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE-
T ss_pred chhhhHHHHhccCCCCCEEECcCC-----ccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc-
Confidence 34444443322 35666666543 11122 23455566677777776655321125666677777776666532
Q ss_pred HHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecc
Q 039643 164 MVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSE 243 (520)
Q Consensus 164 ~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~ 243 (520)
+..++.|+.|++.++.- ..+....+++|+.|+++++.... + .+..+..+++|++|++++
T Consensus 95 -----l~~~~~L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~N~l~~--~-------------~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 95 -----LLVGPSIETLHAANNNI-SRVSCSRGQGKKNIYLANNKITM--L-------------RDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp -----EEECTTCCEEECCSSCC-SEEEECCCSSCEEEECCSSCCCS--G-------------GGBCTGGGSSEEEEECTT
T ss_pred -----ccCCCCcCEEECCCCcc-CCcCccccCCCCEEECCCCCCCC--c-------------cchhhhccCCCCEEECCC
Confidence 22346666666666542 11112224566666666554210 0 122356677888888887
Q ss_pred cccchhHHHHHHhCCcccceeecccccccc-ccccccccccEEEeecCCchh--HHhcCCCCccEeEecccCCCCccccc
Q 039643 244 IVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIPTISISA 320 (520)
Q Consensus 244 ~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~~~~~~~ 320 (520)
+.+++..+..+...+++|+.|.++++..-. +....+++|++|+++++.-.. ..+..+|+|+.|+++++.+..+ ...
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l-~~~ 232 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKA 232 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTT
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch-hhH
Confidence 776653333455677888888888876421 222236678888887753321 3356778888888888876643 111
Q ss_pred ccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643 321 SHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL 363 (520)
Q Consensus 321 l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~ 363 (520)
+.. ..++ +.+..+.+.. .....++.+.+.|+.+.+..
T Consensus 233 ~~~l~~L~~L~l~~N~~~~------~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHC------GTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CCCCTTCCEEECTTCCCBH------HHHHHHHHTCHHHHHHHHHH
T ss_pred hhcCCCCCEEEccCCCccC------cCHHHHHhccccceEEECCC
Confidence 211 1243 4455555541 12366777888888887763
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.18 E-value=4.1e-11 Score=126.57 Aligned_cols=82 Identities=17% Similarity=0.106 Sum_probs=37.8
Q ss_pred cCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecCCchh---HHhcCCCCc
Q 039643 230 VATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNL 303 (520)
Q Consensus 230 ~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L 303 (520)
+.++++|++|+++++.+++- .-+..+++|+.|+|+++.... +. -..+++|++|.+.++.... ..+..+|+|
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSC---CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCCCCEEECCCCccccc---ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 34555555555555544321 123455555555555554311 11 1123455555555432211 233455566
Q ss_pred cEeEecccCCC
Q 039643 304 LSFTFESVRIP 314 (520)
Q Consensus 304 ~~L~l~~~~~~ 314 (520)
+.|+++++.+.
T Consensus 269 ~~L~L~~N~l~ 279 (452)
T 3zyi_A 269 VELNLAHNNLS 279 (452)
T ss_dssp CEEECCSSCCS
T ss_pred CEEECCCCcCC
Confidence 66666655544
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.18 E-value=6.9e-11 Score=130.48 Aligned_cols=270 Identities=10% Similarity=0.048 Sum_probs=158.2
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccc-cC---CCcccCCC------CCCCEEEecceecChHHHHH
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCR-LD---EPLIAINL------NSLKNLSLQRVYANEQMVHN 167 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~-l~---~p~~~~~l------~sLk~L~L~~v~~~~~~l~~ 167 (520)
.++++|++... .....+|..+..+++|++|+|++|. +. .|.....+ ++|++|+|.++.+. .++.
T Consensus 249 ~~L~~L~L~~n----~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~ 322 (636)
T 4eco_A 249 KDLTDVEVYNC----PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPV 322 (636)
T ss_dssp TTCCEEEEECC----TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCC
T ss_pred CCCCEEEecCC----cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCc
Confidence 67889999774 1234678888888888888888876 53 34444444 78888888887764 3333
Q ss_pred --HHhcCCCcceeeeeccCCccee-ccc-----------------------cccc-cceEEEecccCCC-Cceee--eCC
Q 039643 168 --LIAECCSLEDLSLRYTLGLKFF-SVS-----------------------KAHK-LKNMVIVDYSRSS-ELESI--VAP 217 (520)
Q Consensus 168 --Lls~CP~LE~L~L~~c~~l~~l-~I~-----------------------~~~~-Lk~L~I~~~~~~~-~~~~i--~aP 217 (520)
.+..++.|+.|++.+|.....+ .+. ++++ |+.|+++++.... +.... ..+
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred hhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence 5667788888887776421011 222 2344 5555555554310 11001 123
Q ss_pred ceeEEEecc-------ccccC-------CCCCcceEEecccccchhHHHHHHhCCcccceeecccccccccccc-cc---
Q 039643 218 SLQQLTLVR-------VIVVA-------TCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKF-SS--- 279 (520)
Q Consensus 218 ~L~~L~l~~-------~~~~~-------~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~-~f--- 279 (520)
+|++|.+.. +..+. .+++|+.|+++++.++. ....++..+++|+.|.++++... .++. .+
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~ 480 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE 480 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence 677777642 12233 55678888888777653 34456677888888888887642 1111 11
Q ss_pred -------ccccEEEeecCCchh--HHhc--CCCCccEeEecccCCCCcccccccC-CCcE-EEEe------ccccccChh
Q 039643 280 -------NLLKRVAFLFCRSLR--AVDL--DTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFV------HEHDVGDID 340 (520)
Q Consensus 280 -------~~L~~L~L~~c~~l~--~lL~--~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~------~~~~~g~~~ 340 (520)
.+|++|+|+++.-.. ..+. .+|+|+.|+++++.+..+ ...+.. ..|+ +.+. .+.+.+.+
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~- 558 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREW- 558 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCC-
T ss_pred cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccC-
Confidence 278888888753322 3333 788899999988876644 111111 1243 3342 23334432
Q ss_pred hHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643 341 NWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI 395 (520)
Q Consensus 341 ~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~ 395 (520)
...+.+++.|+.|.+.. +..+.++..+ . + .|++|.+.
T Consensus 559 ------p~~l~~l~~L~~L~Ls~--N~l~~ip~~~-------~--~-~L~~L~Ls 595 (636)
T 4eco_A 559 ------PEGITLCPSLTQLQIGS--NDIRKVNEKI-------T--P-NISVLDIK 595 (636)
T ss_dssp ------CTTGGGCSSCCEEECCS--SCCCBCCSCC-------C--T-TCCEEECC
T ss_pred ------hHHHhcCCCCCEEECCC--CcCCccCHhH-------h--C-cCCEEECc
Confidence 33456788888888874 4334444332 1 5 77888877
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.17 E-value=1.2e-10 Score=127.55 Aligned_cols=206 Identities=16% Similarity=0.091 Sum_probs=111.8
Q ss_pred CCceEEEEEecCCCCCcccccCcccc-cCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIY-SAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~-~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.+++.+++... ....+|+.++ .+++|++|+|++|.+.. |..+..+++|++|+|+++.+.. .....+++++.
T Consensus 51 ~~l~~l~l~~~-----~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 124 (597)
T 3oja_B 51 NNQKIVTFKNS-----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL 124 (597)
T ss_dssp CCCSEEEESSC-----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCceEEEeeCC-----CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCC
Confidence 45555655432 2334555433 46677777777765532 3356667777777777666522 11123456677
Q ss_pred cceeeeeccCCcc--eeccccccccceEEEecccCCC--CceeeeCCceeEEEecc----ccccCCCCCcceEEeccccc
Q 039643 175 LEDLSLRYTLGLK--FFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR----VIVVATCPNLKKLHLSEIVL 246 (520)
Q Consensus 175 LE~L~L~~c~~l~--~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~----~~~~~~l~~L~~L~L~~~~~ 246 (520)
|+.|+|.+|.-.. .-.+.++++|+.|+++++.... +......++|++|.+.+ ...+..+++|+.++++++.+
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcc
Confidence 7777777664211 1112346677777777665321 11122456677776652 22345566777777766555
Q ss_pred chhHHHHHHhCCcccceeeccccccccccccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCCC
Q 039643 247 EDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 247 ~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~~ 315 (520)
+. +...++|+.|.++++..-.-.+..+.+|+.|.|+++.... ..+..+|+|+.|+++++.+..
T Consensus 205 ~~------l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 205 ST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp SE------EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred cc------ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC
Confidence 43 2344567777776665321112233567777776643222 445666777777777766543
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=6e-11 Score=134.99 Aligned_cols=271 Identities=10% Similarity=0.019 Sum_probs=149.6
Q ss_pred hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccc-cC---CCc-------ccCCCCCCCEEEecceecChHHH
Q 039643 97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCR-LD---EPL-------IAINLNSLKNLSLQRVYANEQMV 165 (520)
Q Consensus 97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~-l~---~p~-------~~~~l~sLk~L~L~~v~~~~~~l 165 (520)
-.+++.|+|.... ....+|..+..+++|++|+|++|. +. .|. .+..+++|+.|+|+++.+. .+
T Consensus 490 L~~L~~L~Ls~N~----l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~i 563 (876)
T 4ecn_A 490 LKDLTDVELYNCP----NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EF 563 (876)
T ss_dssp CTTCCEEEEESCT----TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BC
T ss_pred CCCCCEEECcCCC----CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--cc
Confidence 3578888887641 234567777777777777777765 42 232 2234457777777776664 23
Q ss_pred HH--HHhcCCCcceeeeeccCCccee-ccccccc------------------------cceEEEecccCCC-Ccee--ee
Q 039643 166 HN--LIAECCSLEDLSLRYTLGLKFF-SVSKAHK------------------------LKNMVIVDYSRSS-ELES--IV 215 (520)
Q Consensus 166 ~~--Lls~CP~LE~L~L~~c~~l~~l-~I~~~~~------------------------Lk~L~I~~~~~~~-~~~~--i~ 215 (520)
+. .+.+++.|+.|+|++|... .+ .+.++++ |+.|+++++.... +... ..
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~ 642 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS 642 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC
T ss_pred CChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccc
Confidence 33 4556666666666665321 11 2223344 5555555544210 0000 11
Q ss_pred CCceeEEEeccc------c----ccC--CCCCcceEEecccccchhHHHHHHhCCcccceeecccccccccccc------
Q 039643 216 APSLQQLTLVRV------I----VVA--TCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKF------ 277 (520)
Q Consensus 216 aP~L~~L~l~~~------~----~~~--~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~------ 277 (520)
.++|+.|.+... . .+. .+++|+.|+++++.++. ....++..+++|+.|.|+++..- .++.
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 133666665410 0 111 23477888887777653 34456678888888888887632 1111
Q ss_pred -----ccccccEEEeecCCchh--HHhc--CCCCccEeEecccCCCCcccccccC-CCcE-EEEec------cccccChh
Q 039643 278 -----SSNLLKRVAFLFCRSLR--AVDL--DTPNLLSFTFESVRIPTISISASHQ-CPWN-VFFVH------EHDVGDID 340 (520)
Q Consensus 278 -----~f~~L~~L~L~~c~~l~--~lL~--~~P~L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~------~~~~g~~~ 340 (520)
.+++|+.|+|++|.-.. ..+. .+|+|+.|+++++.+..+ ...+.. ..|+ +.+.. +.+.+.+
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i- 798 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQW- 798 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCC-
T ss_pred cccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccC-
Confidence 11278888888753322 3333 788999999988876654 111111 1243 33433 3344443
Q ss_pred hHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643 341 NWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV 396 (520)
Q Consensus 341 ~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~ 396 (520)
...+.+++.|+.|.+.. +..+.++..+ . + .|+.|.+..
T Consensus 799 ------p~~l~~L~~L~~L~Ls~--N~L~~Ip~~l-------~--~-~L~~LdLs~ 836 (876)
T 4ecn_A 799 ------PTGITTCPSLIQLQIGS--NDIRKVDEKL-------T--P-QLYILDIAD 836 (876)
T ss_dssp ------CTTGGGCSSCCEEECCS--SCCCBCCSCC-------C--S-SSCEEECCS
T ss_pred ------hHHHhcCCCCCEEECCC--CCCCccCHhh-------c--C-CCCEEECCC
Confidence 33456788888888874 4334444432 1 4 777888773
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.17 E-value=6.8e-11 Score=129.12 Aligned_cols=208 Identities=14% Similarity=0.056 Sum_probs=111.6
Q ss_pred hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
..++++|++... ....+| .+..+++|++|++++|.+...+.. .+++|++|++.++...... -+..+|.|+
T Consensus 284 l~~L~~L~l~~~-----~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~ 353 (606)
T 3vq2_A 284 LANVSAMSLAGV-----SIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLS 353 (606)
T ss_dssp GTTCSEEEEESC-----CCCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCC
T ss_pred CCCCCEEEecCc-----cchhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch---hhccCCCCC
Confidence 367888888664 123455 566677788888887766332233 7777777777766431111 234567777
Q ss_pred eeeeeccCC--cc--eeccccccccceEEEecccCCC-CceeeeCCceeEEEecc-------c-cccCCCCCcceEEecc
Q 039643 177 DLSLRYTLG--LK--FFSVSKAHKLKNMVIVDYSRSS-ELESIVAPSLQQLTLVR-------V-IVVATCPNLKKLHLSE 243 (520)
Q Consensus 177 ~L~L~~c~~--l~--~l~I~~~~~Lk~L~I~~~~~~~-~~~~i~aP~L~~L~l~~-------~-~~~~~l~~L~~L~L~~ 243 (520)
.|++.+|.. .. ...+.++++|+.|+++++.... +......++|+.|.+.. + ..+..+++|++|++++
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 777776641 11 1123345667777776664210 11122346666666641 1 2345566666666666
Q ss_pred cccchhHHHHHHhCCcccceeecccccccc---ccc-cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCC
Q 039643 244 IVLEDQEFHELISKFPLLEDLSVSSSQPLE---RVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 244 ~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~---~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~ 315 (520)
+.+++. ....++++++|+.|.++++.... +.. ..+++|+.|++++|.... ..+..+++|+.|+++++.+..
T Consensus 434 n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 434 TNTKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp SCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 554431 22335566666666666654321 111 123566666666543221 334556666666666665543
No 37
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.17 E-value=1.1e-10 Score=116.99 Aligned_cols=188 Identities=17% Similarity=0.131 Sum_probs=112.3
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED 177 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~ 177 (520)
.++++|++... ....+| .+..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+- . -+..++.|+.
T Consensus 41 ~~L~~L~l~~~-----~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~ 111 (308)
T 1h6u_A 41 DGITTLSAFGT-----GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKT 111 (308)
T ss_dssp HTCCEEECTTS-----CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCE
T ss_pred CCcCEEEeeCC-----CccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCE
Confidence 45666666442 122344 4556677777777777664322267777777777777766321 1 2556777777
Q ss_pred eeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhC
Q 039643 178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISK 257 (520)
Q Consensus 178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~ 257 (520)
|++.+|.--....+.++++|+.|+++++.... ...+..+++|+.|+++++.+++-. . +.+
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~l~~n~l~~~~--~-l~~ 171 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITN-----------------ISPLAGLTNLQYLSIGNAQVSDLT--P-LAN 171 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCC-----------------CGGGGGCTTCCEEECCSSCCCCCG--G-GTT
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCc-----------------CccccCCCCccEEEccCCcCCCCh--h-hcC
Confidence 77777642111124456777777777665310 112456777788888777665421 1 677
Q ss_pred Ccccceeecccccccc-ccccccccccEEEeecCCchh-HHhcCCCCccEeEecccCCC
Q 039643 258 FPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 258 l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~ 314 (520)
+++|+.|.++++..-. +.-..+++|++|+++++.-.. ..+..+|+|+.|+++++.+.
T Consensus 172 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred CCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 7888888887765321 111235678888887653321 23677888888888887654
No 38
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.16 E-value=1.8e-10 Score=125.23 Aligned_cols=252 Identities=13% Similarity=0.121 Sum_probs=114.1
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-----CCcccCCCCCCCEEEecceecChHHHHHHHhcC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-----EPLIAINLNSLKNLSLQRVYANEQMVHNLIAEC 172 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-----~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~C 172 (520)
.++++|++... ....+|..+..+++|++|.++++... .+.....+++|+.|.+.++. ...++.++..|
T Consensus 220 ~~L~~L~L~~~-----~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~ 292 (592)
T 3ogk_B 220 RSLVSVKVGDF-----EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFA 292 (592)
T ss_dssp TTCCEEECSSC-----BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGG
T ss_pred CCCcEEeccCc-----cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhc
Confidence 67888877553 12235555556666666666542111 01223344445554444421 22233334444
Q ss_pred CCcceeeeeccCCcce--e--ccccccccceEEEecccCCC--CceeeeCCceeEEEecc----------ccc-------
Q 039643 173 CSLEDLSLRYTLGLKF--F--SVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR----------VIV------- 229 (520)
Q Consensus 173 P~LE~L~L~~c~~l~~--l--~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~----------~~~------- 229 (520)
++|++|+|.+|. +.. + .+.++++|++|++..+.... ..+.-.+|+|++|.+.. ...
T Consensus 293 ~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 293 AQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 555555554443 110 0 01234445554444221000 00111234444444441 100
Q ss_pred --cCCCCCcceEEecccccchhHHHHHHhCCcccceeeccc---ccccccc---------ccccccccEEEeecCCc-h-
Q 039643 230 --VATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSS---SQPLERV---------KFSSNLLKRVAFLFCRS-L- 293 (520)
Q Consensus 230 --~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~---~~~l~~~---------~~~f~~L~~L~L~~c~~-l- 293 (520)
...+++|++|++..+.+++..+..+..++++|+.|.+++ +..+... ...+++|++|+++.|.+ +
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 123566666666555555544544445566666666653 2222110 11245566666654432 1
Q ss_pred ----hHHhcCCCCccEeEecccCCCCcc-cccccCC-CcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643 294 ----RAVDLDTPNLLSFTFESVRIPTIS-ISASHQC-PWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL 363 (520)
Q Consensus 294 ----~~lL~~~P~L~~L~l~~~~~~~~~-~~~l~~~-~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~ 363 (520)
..+...+|+|+.|++..+++.... ...+..+ .|+ +.+..+.+.+ ..+..+.++++.|+.|.+..
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE------RAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH------HHHHHHHHHCSSCCEEEEES
T ss_pred HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH------HHHHHHHHhcCccCeeECcC
Confidence 133344666666666655543210 0111111 133 3444444332 22356667888899988884
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.16 E-value=7.2e-10 Score=119.39 Aligned_cols=209 Identities=15% Similarity=0.107 Sum_probs=144.9
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL 175 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L 175 (520)
..+++|++.... .....|..+..+++|++|+|++|.+.. |..+.++++|++|+|+++.+.+ .....+++++.|
T Consensus 26 ~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNK----ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSC----CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTC
T ss_pred CCccEEECcCCc----cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCC
Confidence 579999987641 122335678889999999999997743 4568899999999999998843 223346889999
Q ss_pred ceeeeeccCCc--c-eeccccccccceEEEecccCCC--C-ceeeeCCceeEEEecc-------ccccCCCCCcceEEec
Q 039643 176 EDLSLRYTLGL--K-FFSVSKAHKLKNMVIVDYSRSS--E-LESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLS 242 (520)
Q Consensus 176 E~L~L~~c~~l--~-~l~I~~~~~Lk~L~I~~~~~~~--~-~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~ 242 (520)
++|++++|.-. . .-.+.++++|+.|+++++.... + ......++|++|.+.. +..+..+++|++|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 99999998632 1 1235568999999999986311 1 1123468899999852 3456788999999998
Q ss_pred ccccchhHHHHHHhCCcccceeecccccccc----c--cccccccccEEEeecCCchh-------HHhcCCCCccEeEec
Q 039643 243 EIVLEDQEFHELISKFPLLEDLSVSSSQPLE----R--VKFSSNLLKRVAFLFCRSLR-------AVDLDTPNLLSFTFE 309 (520)
Q Consensus 243 ~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~----~--~~~~f~~L~~L~L~~c~~l~-------~lL~~~P~L~~L~l~ 309 (520)
.+..+. ....++..+++|+.|.++++.... + ......+|++|++.++.... ..+...++|+.+++.
T Consensus 181 ~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp CSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred cCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 876643 344456789999999999876421 1 11234678888887643211 333556667777766
Q ss_pred ccC
Q 039643 310 SVR 312 (520)
Q Consensus 310 ~~~ 312 (520)
++.
T Consensus 260 ~~~ 262 (549)
T 2z81_A 260 DCT 262 (549)
T ss_dssp SCE
T ss_pred ccc
Confidence 654
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.15 E-value=6.7e-11 Score=127.86 Aligned_cols=191 Identities=13% Similarity=0.060 Sum_probs=96.4
Q ss_pred cCcccccCCCccEEEEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccc
Q 039643 118 LPQAIYSAKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHK 196 (520)
Q Consensus 118 LP~~l~~~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~ 196 (520)
+|..+..+++|++|+++++.+ ..|.....+ +|++|++.++.+.. ++. ..++.|+.|++.++..........+++
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCccccccccccCCC
Confidence 344555566777777777654 335555555 77777776666531 111 356667777776665333222234666
Q ss_pred cceEEEecccCCCC----ceeeeCCceeEEEecc------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeec
Q 039643 197 LKNMVIVDYSRSSE----LESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSV 266 (520)
Q Consensus 197 Lk~L~I~~~~~~~~----~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L 266 (520)
|+.|+++++..... ......++|++|.+.. +..+..+++|++|+++++.+++......+.++++|+.|++
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 77777666652100 0111345666666541 1124556666666666554433211123455666666666
Q ss_pred ccccccccc---ccccccccEEEeecCCch----hHHhcCCCCccEeEecccCC
Q 039643 267 SSSQPLERV---KFSSNLLKRVAFLFCRSL----RAVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 267 ~~~~~l~~~---~~~f~~L~~L~L~~c~~l----~~lL~~~P~L~~L~l~~~~~ 313 (520)
++|...... -..+++|++|++.+|... ...+..+|+|+.|+++++.+
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 665432111 112345666666554321 13344556666666655543
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.15 E-value=6.1e-11 Score=124.75 Aligned_cols=194 Identities=16% Similarity=0.084 Sum_probs=101.4
Q ss_pred ccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccc
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVS 192 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~ 192 (520)
.+|..+. ++++.|+|+++.+.. +..+.++++|++|+|+++.+..- ....+.+++.|+.|+|.++.- +..-.+.
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 4454443 456666666655432 34455666666666666654210 011234566666666666531 1111233
Q ss_pred cccccceEEEecccCCC--CceeeeCCceeEEEecc--------ccccCCCCCcceEEecccccchhHHHHHHhCCcccc
Q 039643 193 KAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR--------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLE 262 (520)
Q Consensus 193 ~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~--------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~ 262 (520)
++++|+.|+++++.... ....-..++|++|.+.. ...+.++++|++|+++++.++.- .-+..+++|+
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~ 210 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---PNLTPLIKLD 210 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---CCCTTCSSCC
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---cccCCCcccC
Confidence 45666666666654310 00112345666666542 12355677777777776665431 1255667777
Q ss_pred eeecccccccc--cc-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCc
Q 039643 263 DLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTI 316 (520)
Q Consensus 263 ~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~ 316 (520)
.|+|+++.... +. -..+.+|++|.|.++.... ..+..+|+|+.|+++++.+..+
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 77777765321 11 1134567777776643211 3445677777777777766543
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.14 E-value=2.1e-10 Score=127.09 Aligned_cols=146 Identities=15% Similarity=0.025 Sum_probs=75.9
Q ss_pred hcCCCcceeeeeccCC--cceeccccccccceEEEecccCCCCce------eeeCCceeEEEecc-------ccccCCCC
Q 039643 170 AECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSELE------SIVAPSLQQLTLVR-------VIVVATCP 234 (520)
Q Consensus 170 s~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~~~------~i~aP~L~~L~l~~-------~~~~~~l~ 234 (520)
..|+.|+.|++.++.- ...-.+.++++|+.|+++++......+ ....++|+.|.+.. +..+..++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 3455555555555431 111123345666666666554211000 11124666666641 23456677
Q ss_pred CcceEEecccccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecCCch-----hHHhcCCCCccEe
Q 039643 235 NLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSL-----RAVDLDTPNLLSF 306 (520)
Q Consensus 235 ~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l-----~~lL~~~P~L~~L 306 (520)
+|+.|+++.+.+++......+.++++|+.|.++++.... +. ...+++|++|.+.++... ...+..+++|+.|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 788888877665432222446677777887777765321 11 112456777776654321 1334566777777
Q ss_pred EecccCCCC
Q 039643 307 TFESVRIPT 315 (520)
Q Consensus 307 ~l~~~~~~~ 315 (520)
+++++.+..
T Consensus 486 ~Ls~N~l~~ 494 (680)
T 1ziw_A 486 DLSNNNIAN 494 (680)
T ss_dssp ECCSSCCCC
T ss_pred ECCCCCCCc
Confidence 777665553
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.13 E-value=1.2e-10 Score=114.87 Aligned_cols=185 Identities=13% Similarity=0.010 Sum_probs=101.1
Q ss_pred CCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee---ccccccccceE
Q 039643 126 KLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF---SVSKAHKLKNM 200 (520)
Q Consensus 126 ~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l---~I~~~~~Lk~L 200 (520)
++|++|+|+++.+.. +..+..+++|++|+|+++.+.+- ....+.+++.|+.|++.++..+..+ .+.++++|+.|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 466777777765532 23456677777777776655311 1122455677777777766422221 23346677777
Q ss_pred EEecccCCC--CceeeeCCceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc
Q 039643 201 VIVDYSRSS--ELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP 271 (520)
Q Consensus 201 ~I~~~~~~~--~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~ 271 (520)
++.++.... +...-..++|++|.+.. ...+..+++|++|+++++.++. .....+.++++|+.|.++++..
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHHhcCccccCEEECCCCcc
Confidence 777665321 01111245555555531 1124567777777777766543 1223456677777777777653
Q ss_pred cc--ccc-cccccccEEEeecCCchh---HHhcCCCCccEeEecccC
Q 039643 272 LE--RVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVR 312 (520)
Q Consensus 272 l~--~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~ 312 (520)
.. +.. ..+++|++|+++++.-.. ..+..+|+|+.|++.++.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 21 111 124567777776643211 445667777777776664
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.13 E-value=2.8e-10 Score=122.58 Aligned_cols=257 Identities=16% Similarity=0.106 Sum_probs=142.4
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSL 175 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L 175 (520)
.++++|++.... .....|..+..+++|++|+|++|.+.. ++ .+.++++|++|+|+++.+..-.....+.+++.|
T Consensus 50 ~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 50 ANLQVLILKSSR----INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CcccEEECCCCC----cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 567777775531 112234566677888888888876633 33 367788888888888776322222245677888
Q ss_pred ceeeeeccCCccee---ccccccccceEEEecccCCC--Cceee------------------------eCCceeEEEecc
Q 039643 176 EDLSLRYTLGLKFF---SVSKAHKLKNMVIVDYSRSS--ELESI------------------------VAPSLQQLTLVR 226 (520)
Q Consensus 176 E~L~L~~c~~l~~l---~I~~~~~Lk~L~I~~~~~~~--~~~~i------------------------~aP~L~~L~l~~ 226 (520)
+.|++.+|.....+ .+.++++|+.|+++++.... +...- ..++|++|.+..
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence 88888877533322 34456777777777765320 00011 135555555531
Q ss_pred c---------cc-cCCCCCcceEEecccccchhHH---HHHHhCCcccceeecccccccc--cc-------ccc------
Q 039643 227 V---------IV-VATCPNLKKLHLSEIVLEDQEF---HELISKFPLLEDLSVSSSQPLE--RV-------KFS------ 278 (520)
Q Consensus 227 ~---------~~-~~~l~~L~~L~L~~~~~~~~~~---~~ll~~l~~L~~L~L~~~~~l~--~~-------~~~------ 278 (520)
. .. ...+++|+.+++.++.+++..+ ...+..+++++.|.+.+|.... .. ...
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 285 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE
T ss_pred CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 0 01 1235667777776665554332 2345667777888777664210 00 001
Q ss_pred -----------------------cccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCcc---cccccC-CCcE-
Q 039643 279 -----------------------SNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTIS---ISASHQ-CPWN- 327 (520)
Q Consensus 279 -----------------------f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~---~~~l~~-~~L~- 327 (520)
..+|++|++.++.-.. .+...+++|+.|+++++.+.... ...+.. ..++
T Consensus 286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~ 365 (549)
T 2z81_A 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365 (549)
T ss_dssp EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred ccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence 1346666665533211 33356888888888888765320 011111 1243
Q ss_pred EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643 328 VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL 363 (520)
Q Consensus 328 v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~ 363 (520)
+.+.++.+.+- ......+.+++.|+.|.+..
T Consensus 366 L~Ls~N~l~~~-----~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 366 LVLSQNHLRSM-----QKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp EECTTSCCCCH-----HHHHHHGGGCTTCCEEECTT
T ss_pred EEccCCccccc-----ccchhhhhcCCCCCEEECCC
Confidence 44556655531 11134578888999888874
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.13 E-value=3e-10 Score=120.46 Aligned_cols=201 Identities=13% Similarity=0.031 Sum_probs=121.6
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED 177 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~ 177 (520)
.++++|++.... ...+| .+..+++|++|+|++|.+...+ +..+++|++|+|+++.+.+-. +.+++.|+.
T Consensus 42 ~~L~~L~Ls~n~-----l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSS-----ITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSC-----CCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCE
T ss_pred CCCCEEEccCCC-----cccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee----cCCCCcCCE
Confidence 567777775531 12344 5667788888888887664422 667788888888877773321 567788888
Q ss_pred eeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHHH
Q 039643 178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFH 252 (520)
Q Consensus 178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~ 252 (520)
|++.++. +..+.+..+++|+.|+++++.... ......++|+.|.+.. ...+..+++|++|+++.+.+++- .
T Consensus 111 L~L~~N~-l~~l~~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--~ 186 (457)
T 3bz5_A 111 LNCDTNK-LTKLDVSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--D 186 (457)
T ss_dssp EECCSSC-CSCCCCTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--C
T ss_pred EECCCCc-CCeecCCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--c
Confidence 8887774 222345567778888877776321 1122456777777642 22456677777777777666542 1
Q ss_pred HHHhCCcccceeeccccccccccccccccccEEEeecCCchhHHhcCCCCccEeEecccCCCC
Q 039643 253 ELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 253 ~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~ 315 (520)
++.+++|+.|.++++..-...-..+++|++|+++++.-....+..+|+|+.|+++++.+..
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC
T ss_pred --cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCC
Confidence 5667777777777665311111134567777776643222124566777777777665543
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.11 E-value=2.4e-10 Score=130.27 Aligned_cols=123 Identities=14% Similarity=-0.027 Sum_probs=68.5
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEecccc--CC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRL--DE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l--~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.++++|+|.... .....|..+..+++|++|+|++|.. .. |..+.++++|++|+|+++.+.. ..+..+.+++.
T Consensus 24 ~~l~~LdLs~N~----i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFNY----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFH 98 (844)
T ss_dssp TTCCEEEEESCC----CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSCSCSS
T ss_pred CCcCEEECCCCc----CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHccCCcc
Confidence 567888887641 1222355666677777777777632 22 4456677777777777766521 11223456677
Q ss_pred cceeeeeccCCcc----eeccccccccceEEEecccCCCC---ceeeeCCceeEEEec
Q 039643 175 LEDLSLRYTLGLK----FFSVSKAHKLKNMVIVDYSRSSE---LESIVAPSLQQLTLV 225 (520)
Q Consensus 175 LE~L~L~~c~~l~----~l~I~~~~~Lk~L~I~~~~~~~~---~~~i~aP~L~~L~l~ 225 (520)
|+.|+|++|.... ...+.++++|+.|+++++..... ...-..++|++|.+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 7777777764211 11144566777777776653210 112245666666654
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.10 E-value=8.1e-10 Score=125.83 Aligned_cols=98 Identities=16% Similarity=0.067 Sum_probs=63.8
Q ss_pred CceeEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEE
Q 039643 217 PSLQQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVA 286 (520)
Q Consensus 217 P~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~ 286 (520)
++|+.|.+.. +..+..+++|+.|+++.+.++.. ....+.++++|+.|.|+++.... +. -..+++|++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 5777777752 23457788889998888776542 22456788899999988876421 11 12356788888
Q ss_pred eecCCchh---HHhcCCCCccEeEecccCCCC
Q 039643 287 FLFCRSLR---AVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 287 L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~ 315 (520)
++++.-.. ..+..+|+|+.|+++++.+..
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 87643211 335667888888887776543
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.09 E-value=6.9e-11 Score=118.80 Aligned_cols=209 Identities=13% Similarity=0.043 Sum_probs=148.9
Q ss_pred hCCceEEEEEe-cCCCCCcccccCcccccCCCccEEEEeccccC--CCcccCCCCCCCEEEecceecChHHHHHHHhcCC
Q 039643 97 GNGVKELHIVV-ESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD--EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECC 173 (520)
Q Consensus 97 ~~~VkeL~L~~-~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~--~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP 173 (520)
-..++.|++.. . .....+|..+..+++|++|+|+++.+. .|..+..+++|++|+|+++.+.+ .++..+..++
T Consensus 75 l~~L~~L~L~~~n----~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~ 149 (313)
T 1ogq_A 75 LPYLNFLYIGGIN----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLP 149 (313)
T ss_dssp CTTCSEEEEEEET----TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCT
T ss_pred CCCCCeeeCCCCC----cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCC
Confidence 47899999983 3 123467889999999999999999774 47778999999999999998732 2233467899
Q ss_pred CcceeeeeccCCc--ceecccccc-ccceEEEecccCC-CCceeeeCCceeEEEecc-------ccccCCCCCcceEEec
Q 039643 174 SLEDLSLRYTLGL--KFFSVSKAH-KLKNMVIVDYSRS-SELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLS 242 (520)
Q Consensus 174 ~LE~L~L~~c~~l--~~l~I~~~~-~Lk~L~I~~~~~~-~~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~ 242 (520)
.|+.|++.++... ....+..++ +|+.|+++++... .....+...+|+.|.+.. +..+..+++|+.|+++
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 9999999998632 122344466 9999999988642 111122222499998852 3456889999999999
Q ss_pred ccccchhHHHHHHhCCcccceeeccccccccccc---cccccccEEEeecCCchh--HHhcCCCCccEeEecccC
Q 039643 243 EIVLEDQEFHELISKFPLLEDLSVSSSQPLERVK---FSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVR 312 (520)
Q Consensus 243 ~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~---~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~ 312 (520)
.+.+++... .+..+++|+.|+++++......+ ..+++|++|+++++.-.. ......|+|+.+++.+++
T Consensus 230 ~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 230 KNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp SSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CCceeeecC--cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 988765322 26788999999999987532222 245789999998753321 112567788888887774
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.08 E-value=2.1e-09 Score=115.04 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=90.7
Q ss_pred CCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--cc---ccccccccEEEeecCCchh----HHhcCCC
Q 039643 231 ATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV---KFSSNLLKRVAFLFCRSLR----AVDLDTP 301 (520)
Q Consensus 231 ~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~---~~~f~~L~~L~L~~c~~l~----~lL~~~P 301 (520)
..+++|++|+++++.+++. ....++++++|+.|.++++.... .. -..+++|++|+++++.... ..+...+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDT-VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTT-TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChh-hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 5778899999988877653 22456788999999998877422 11 1245789999998754322 2346678
Q ss_pred CccEeEecccCCCCcccccccCCCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccc
Q 039643 302 NLLSFTFESVRIPTISISASHQCPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKN 380 (520)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~ 380 (520)
+|+.|+++++.+.......+. ..++ +.+..+.+. .+ ..-+.+++.|+.|.+.. +.-..++..
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~-~i-------p~~~~~l~~L~~L~L~~--N~l~~l~~~------ 462 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIK-SI-------PKQVVKLEALQELNVAS--NQLKSVPDG------ 462 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCC-CC-------CGGGGGCTTCCEEECCS--SCCCCCCTT------
T ss_pred cCCEEECcCCCCCcchhhhhc-ccCCEEECCCCccc-cc-------chhhhcCCCCCEEECCC--CcCCccCHH------
Confidence 999999988876532011121 2343 445555554 22 22234788999998874 432233322
Q ss_pred cCCCCcccccceEEEE
Q 039643 381 RSPSLPFQVGNMRLIV 396 (520)
Q Consensus 381 asp~l~~~l~~L~l~~ 396 (520)
+...++ .|++|.+..
T Consensus 463 ~~~~l~-~L~~L~l~~ 477 (520)
T 2z7x_B 463 IFDRLT-SLQKIWLHT 477 (520)
T ss_dssp TTTTCT-TCCEEECCS
T ss_pred HhccCC-cccEEECcC
Confidence 234457 888888773
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.08 E-value=3.8e-10 Score=119.12 Aligned_cols=210 Identities=14% Similarity=0.040 Sum_probs=140.9
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL 175 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L 175 (520)
.+++.|+|.... .....|..+..+++|++|+|++|.+.. +..+.++++|++|+|+++.+.. .....+.+++.|
T Consensus 75 ~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENN----IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTC
T ss_pred CCccEEECcCCc----CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCC
Confidence 578888886641 122235567778899999999886643 4567788999999998887631 111235678899
Q ss_pred ceeeeeccCCc--ceeccccccccceEEEecccCCC---CceeeeCCceeEEEecc-----ccccCCCCCcceEEecccc
Q 039643 176 EDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSS---ELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIV 245 (520)
Q Consensus 176 E~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~---~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~ 245 (520)
+.|+|+++... ....+.++++|++|+++++.... ....-..++|++|.+.. ...+..+++|++|+++++.
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence 99999888522 11234457899999998864311 11122467889888862 2346778899999998887
Q ss_pred cchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643 246 LEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 246 ~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~ 313 (520)
+++. ....+.++++|+.|.++++.... +. -..+++|+.|+|+++.-.. ..+..+++|+.|++.++..
T Consensus 230 l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 230 FPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CSEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred Cccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 7642 23557888999999998876422 11 1235689999998753221 4456788899999888743
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.08 E-value=4.3e-10 Score=118.25 Aligned_cols=209 Identities=15% Similarity=0.047 Sum_probs=149.0
Q ss_pred CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.+++.|+|... ....+ |..+..+++|++|+|++|.+.. +..+.++++|++|+|+++.+.. .....+.+++.
T Consensus 64 ~~l~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHEN-----QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSC-----CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-CCTTTSCSCSS
T ss_pred CCCcEEEccCC-----cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-eCHhHhhcccc
Confidence 67888888664 12233 4567788999999999987743 3567899999999999988732 11123577899
Q ss_pred cceeeeeccCCc--ceeccccccccceEEEecccCCC---CceeeeCCceeEEEecc-----ccccCCCCCcceEEeccc
Q 039643 175 LEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSS---ELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEI 244 (520)
Q Consensus 175 LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~---~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~ 244 (520)
|+.|+|.++... ....+.++++|+.|++.++.... ....-..++|++|.+.. ...+..+++|++|+++++
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence 999999998632 12235568999999999865321 11122468999999862 234678899999999998
Q ss_pred ccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643 245 VLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 245 ~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~ 313 (520)
.++.. ....+.++++|+.|.++++..-. +. -..+++|++|+|+++.-.. ..+..+++|+.|++.++..
T Consensus 218 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 218 HLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccCcc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 87642 23567899999999999987422 11 1235789999998853322 5567889999999988853
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.08 E-value=3e-10 Score=122.71 Aligned_cols=232 Identities=16% Similarity=0.106 Sum_probs=162.3
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.++++|++... ....+|..+..+ +|++|++++|.+.. |. ..+++|++|++.++......- ...+|.|+
T Consensus 282 ~~L~~L~l~~~-----~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~ 350 (570)
T 2z63_A 282 TNVSSFSLVSV-----TIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS---EVDLPSLE 350 (570)
T ss_dssp TTCSEEEEESC-----EECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCC---CCBCTTCC
T ss_pred CcccEEEecCc-----cchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccccccc---cccCCCCC
Confidence 68999999764 233688888888 99999999997754 43 589999999999887622110 16789999
Q ss_pred eeeeeccCCcc----eeccccccccceEEEecccCCC-CceeeeCCceeEEEecc-------c-cccCCCCCcceEEecc
Q 039643 177 DLSLRYTLGLK----FFSVSKAHKLKNMVIVDYSRSS-ELESIVAPSLQQLTLVR-------V-IVVATCPNLKKLHLSE 243 (520)
Q Consensus 177 ~L~L~~c~~l~----~l~I~~~~~Lk~L~I~~~~~~~-~~~~i~aP~L~~L~l~~-------~-~~~~~l~~L~~L~L~~ 243 (520)
.|++++|.... ...+.++++|+.|+++++.... +......++|++|.+.. + ..+.++++|++|++++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence 99999886321 1234458999999999886321 11133578999999862 1 2467899999999998
Q ss_pred cccchhHHHHHHhCCcccceeecccccccc-ccc---cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCc
Q 039643 244 IVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVK---FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTI 316 (520)
Q Consensus 244 ~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~---~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~ 316 (520)
+.+++. ....+.++++|+.|.+++|.... ..+ ..+++|+.|++++|.... ..+..+|+|+.|+++++.+..+
T Consensus 431 n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 431 THTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp SCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred Cccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 776542 33567889999999999987431 111 235789999998864422 4567889999999999877654
Q ss_pred ccccccCC-CcE-EEEeccccccChhh
Q 039643 317 SISASHQC-PWN-VFFVHEHDVGDIDN 341 (520)
Q Consensus 317 ~~~~l~~~-~L~-v~~~~~~~~g~~~~ 341 (520)
....+... .++ +.+.++.+.++.+.
T Consensus 510 ~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 510 PDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CHHHhhcccCCcEEEecCCcccCCCcc
Confidence 11112222 244 56777877777654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.07 E-value=4.5e-10 Score=114.46 Aligned_cols=252 Identities=13% Similarity=0.127 Sum_probs=152.4
Q ss_pred ccccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceec
Q 039643 115 AYTLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFS 190 (520)
Q Consensus 115 ~~~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~ 190 (520)
...+|..++ ++|++|+|+++.+.. ++ .+.++++|++|+|+++.+.+ .....+.+++.|+.|+++++.- +..-.
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence 445677655 489999999987643 33 67889999999999887642 1122356789999999988752 21112
Q ss_pred cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccc-cchhHHHHHHhCCcccceeecccc
Q 039643 191 VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIV-LEDQEFHELISKFPLLEDLSVSSS 269 (520)
Q Consensus 191 I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~l~~L~~L~L~~~ 269 (520)
+.++++|+.|+++++.... + | ....+..+++|++|+++++. ++. .....++++++|+.|.++++
T Consensus 120 ~~~l~~L~~L~L~~n~l~~--l----~--------~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKT--L----G--------ETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp HTTCTTCSEEECTTCCCSS--S----C--------SSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEET
T ss_pred hCCCccCCEEECCCCCCcc--c----C--------chhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCC
Confidence 4457888888888876310 0 0 00135667788888887653 322 22244677888888888877
Q ss_pred cccc--ccc-cccccccEEEeecCCchh---HHhcCCCCccEeEecccCCCCccccccc---C-CCcE-EEEeccccccC
Q 039643 270 QPLE--RVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRIPTISISASH---Q-CPWN-VFFVHEHDVGD 338 (520)
Q Consensus 270 ~~l~--~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~---~-~~L~-v~~~~~~~~g~ 338 (520)
.... +.. ..+++|++|+++++.... .....+++|+.|+++++.+.......+. . ..++ +.+......+.
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 6421 111 234578888887754321 3445688999999988876643111111 1 1122 33444444432
Q ss_pred hhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEEE
Q 039643 339 IDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLIV 396 (520)
Q Consensus 339 ~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~~ 396 (520)
. ...+...+.+++.|+.|.+.. +....++..+ -..++ .|++|.+..
T Consensus 265 --~-l~~l~~~l~~l~~L~~L~Ls~--N~l~~i~~~~------~~~l~-~L~~L~L~~ 310 (353)
T 2z80_A 265 --S-LFQVMKLLNQISGLLELEFSR--NQLKSVPDGI------FDRLT-SLQKIWLHT 310 (353)
T ss_dssp --H-HHHHHHHHHTCTTCCEEECCS--SCCCCCCTTT------TTTCT-TCCEEECCS
T ss_pred --c-hhhhHHHHhcccCCCEEECCC--CCCCccCHHH------HhcCC-CCCEEEeeC
Confidence 2 223456678899999999984 4333333322 13457 888888873
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.06 E-value=3.8e-11 Score=126.42 Aligned_cols=214 Identities=17% Similarity=0.104 Sum_probs=134.5
Q ss_pred CceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC------CcccCCCCCCCEEEecceecChHHHHHHHhcC
Q 039643 99 GVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE------PLIAINLNSLKNLSLQRVYANEQMVHNLIAEC 172 (520)
Q Consensus 99 ~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~C 172 (520)
.+++|++.... .....+...+..+++|++|+|++|.+.. +..+..+++|++|+|+++.+++..+..+...+
T Consensus 4 ~l~~L~Ls~~~---l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 4 DIQSLDIQCEE---LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEESCC---CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred cceehhhhhcc---cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 46677775531 1122223335567899999999987642 34466789999999999888666677777766
Q ss_pred C----CcceeeeeccCCcc------eeccccccccceEEEecccCCCCc---e----eeeCCceeEEEeccc--------
Q 039643 173 C----SLEDLSLRYTLGLK------FFSVSKAHKLKNMVIVDYSRSSEL---E----SIVAPSLQQLTLVRV-------- 227 (520)
Q Consensus 173 P----~LE~L~L~~c~~l~------~l~I~~~~~Lk~L~I~~~~~~~~~---~----~i~aP~L~~L~l~~~-------- 227 (520)
+ .|++|++.+|.-.. .-.+.++++|++|+++++...... + .-..++|++|.+...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 6 69999999885221 112445789999999988632110 0 111357888887521
Q ss_pred ---cccCCCCCcceEEecccccchhHHHHHHh----CCcccceeeccccccccc----cc---cccccccEEEeecCCch
Q 039643 228 ---IVVATCPNLKKLHLSEIVLEDQEFHELIS----KFPLLEDLSVSSSQPLER----VK---FSSNLLKRVAFLFCRSL 293 (520)
Q Consensus 228 ---~~~~~l~~L~~L~L~~~~~~~~~~~~ll~----~l~~L~~L~L~~~~~l~~----~~---~~f~~L~~L~L~~c~~l 293 (520)
..+..+++|++|+++++.+++..+..+.. ..++|+.|.+++|..-.. .. ...++|++|+++++.-.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 12345688888888887776543333332 456888888888763210 11 12467888888775321
Q ss_pred h--------HHhcCCCCccEeEecccCCCC
Q 039643 294 R--------AVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 294 ~--------~lL~~~P~L~~L~l~~~~~~~ 315 (520)
. .+...+++|+.|+++++.+..
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 1 222357888888888876553
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.05 E-value=7.5e-11 Score=117.59 Aligned_cols=209 Identities=17% Similarity=0.089 Sum_probs=147.1
Q ss_pred CCceEEEEEecCCCCCcccccCccc-ccCCCccEEEEeccccCC----CcccCCCCCCCEEEecceecChHHHHHHHhcC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAI-YSAKLLTTLVLNGCRLDE----PLIAINLNSLKNLSLQRVYANEQMVHNLIAEC 172 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l-~~~~sL~~L~L~~c~l~~----p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~C 172 (520)
.++++|++... ....+|..+ ..+++|++|+|+++.+.. +....++++|++|+|+++.+.. +..-+.++
T Consensus 28 ~~l~~L~L~~n-----~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESN-----KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETC
T ss_pred CCCCEEECCCC-----ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCC
Confidence 57889988664 233677654 578999999999986642 3456679999999999987631 11125678
Q ss_pred CCcceeeeeccCC--cce-eccccccccceEEEecccCC--CCceeeeCCceeEEEecc--------ccccCCCCCcceE
Q 039643 173 CSLEDLSLRYTLG--LKF-FSVSKAHKLKNMVIVDYSRS--SELESIVAPSLQQLTLVR--------VIVVATCPNLKKL 239 (520)
Q Consensus 173 P~LE~L~L~~c~~--l~~-l~I~~~~~Lk~L~I~~~~~~--~~~~~i~aP~L~~L~l~~--------~~~~~~l~~L~~L 239 (520)
+.|+.|++.++.. ... -.+.++++|+.|+++++... .+...-..++|++|.+.+ +..+..+++|++|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 9999999998852 221 13445899999999988642 111122468999999852 2346789999999
Q ss_pred EecccccchhHHHHHHhCCcccceeecccccccc--ccc-cccccccEEEeecCCchh---HHhcCCC-CccEeEecccC
Q 039643 240 HLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVK-FSSNLLKRVAFLFCRSLR---AVDLDTP-NLLSFTFESVR 312 (520)
Q Consensus 240 ~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P-~L~~L~l~~~~ 312 (520)
+++++.+++. ....+.++++|+.|.++++.... +.. ..+++|++|+++++.... ..+...| +|+.|+++++.
T Consensus 181 ~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 181 DLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCcCCc-CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 9999887652 23457889999999999987422 111 235789999998864322 3445665 89999999886
Q ss_pred CC
Q 039643 313 IP 314 (520)
Q Consensus 313 ~~ 314 (520)
+.
T Consensus 260 ~~ 261 (306)
T 2z66_A 260 FA 261 (306)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.04 E-value=3.4e-10 Score=120.93 Aligned_cols=201 Identities=20% Similarity=0.155 Sum_probs=144.6
Q ss_pred CceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643 99 GVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED 177 (520)
Q Consensus 99 ~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~ 177 (520)
++++|+|.... ...+ |..+..+++|++|+|++|.+.....+..+++|++|+|+++.+.+ +...|.|+.
T Consensus 35 ~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNP-----LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIET 103 (487)
T ss_dssp GCCEEECCSSC-----CCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCE
T ss_pred CccEEEeeCCc-----CCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCE
Confidence 79999997741 2234 45777899999999999977432238899999999999998743 334599999
Q ss_pred eeeeccCCcceeccccccccceEEEecccCCC--CceeeeCCceeEEEecc-------ccccC-CCCCcceEEecccccc
Q 039643 178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVR-------VIVVA-TCPNLKKLHLSEIVLE 247 (520)
Q Consensus 178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~-------~~~~~-~l~~L~~L~L~~~~~~ 247 (520)
|++.+|.... +....+++|+.|+++++.... +......++|++|.+.. +..+. .+++|+.|+++++.++
T Consensus 104 L~L~~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 104 LHAANNNISR-VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp EECCSSCCCC-EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EECcCCcCCC-CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 9999986322 222347899999999987532 11223568999999862 22343 6899999999998876
Q ss_pred hhHHHHHHhCCcccceeecccccccc--ccccccccccEEEeecCCchh--HHhcCCCCccEeEecccCCC
Q 039643 248 DQEFHELISKFPLLEDLSVSSSQPLE--RVKFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 248 ~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~ 314 (520)
+. .....+++|+.|.|+++..-. +.-..+++|+.|+|+++.-.. ..+..+|+|+.|++.++.+.
T Consensus 183 ~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DV---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EE---ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cc---cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 53 123358999999999987421 222245789999998854322 44567899999999998765
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.04 E-value=4.3e-10 Score=113.05 Aligned_cols=198 Identities=14% Similarity=0.020 Sum_probs=120.0
Q ss_pred hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
-.+++.|++... ....+++ +..+++|++|+|++|.+.. ....++|++|+++++.+.+-. ...++.|+
T Consensus 57 l~~L~~L~Ls~n-----~l~~~~~-~~~l~~L~~L~Ls~n~l~~---l~~~~~L~~L~l~~n~l~~~~----~~~~~~L~ 123 (317)
T 3o53_A 57 FTKLELLNLSSN-----VLYETLD-LESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVS----CSRGQGKK 123 (317)
T ss_dssp CTTCCEEECTTS-----CCEEEEE-ETTCTTCCEEECCSSEEEE---EEECTTCCEEECCSSCCSEEE----ECCCSSCE
T ss_pred CCcCCEEECCCC-----cCCcchh-hhhcCCCCEEECcCCcccc---ccCCCCcCEEECCCCccCCcC----ccccCCCC
Confidence 368999998664 1223333 7788999999999997743 223499999999999874321 23579999
Q ss_pred eeeeeccCC--cceeccccccccceEEEecccCCC-Ccee--eeCCceeEEEecc-----ccccCCCCCcceEEeccccc
Q 039643 177 DLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSS-ELES--IVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVL 246 (520)
Q Consensus 177 ~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~-~~~~--i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~ 246 (520)
.|++.++.. +....+.++++|+.|+++++.... .... -..++|++|.+.. ......+++|++|+++++.+
T Consensus 124 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp EEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcC
Confidence 999999863 333345568999999999987421 0111 1346777777652 11223466777777776665
Q ss_pred chhHHHHHHhCCcccceeecccccccc-cc-ccccccccEEEeecCCch----hHHhcCCCCccEeEec
Q 039643 247 EDQEFHELISKFPLLEDLSVSSSQPLE-RV-KFSSNLLKRVAFLFCRSL----RAVDLDTPNLLSFTFE 309 (520)
Q Consensus 247 ~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~-~~~f~~L~~L~L~~c~~l----~~lL~~~P~L~~L~l~ 309 (520)
++- . ..+..+++|+.|.++++..-. +. -..+++|+.|+++++.-. ...+...|+|+.|++.
T Consensus 204 ~~l-~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 204 AFM-G-PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CEE-C-GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred Ccc-h-hhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 431 1 125566777777776665311 11 112345666666553222 1444555555555554
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.04 E-value=1.3e-09 Score=115.62 Aligned_cols=175 Identities=17% Similarity=0.088 Sum_probs=92.9
Q ss_pred hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
-.++++|++.... ...+| +..+++|++|+|++|.+...+ +.++++|++|+|+++.+.+- + ++.++.|+
T Consensus 63 l~~L~~L~Ls~n~-----l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~ 130 (457)
T 3bz5_A 63 LTGLTKLICTSNN-----ITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLT 130 (457)
T ss_dssp CTTCSEEECCSSC-----CSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCC
T ss_pred cCCCCEEEccCCc-----CCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCC
Confidence 3677888776541 12233 556677778877777664322 56777777777777766321 1 56677777
Q ss_pred eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEecc----ccccCCCCCcceEEecccccchhHHH
Q 039643 177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR----VIVVATCPNLKKLHLSEIVLEDQEFH 252 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~----~~~~~~l~~L~~L~L~~~~~~~~~~~ 252 (520)
.|++.++. +..+.+.++++|+.|+++++...........++|++|.+.. ...+..+++|+.|+++.+.+++.
T Consensus 131 ~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~--- 206 (457)
T 3bz5_A 131 YLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL--- 206 (457)
T ss_dssp EEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---
T ss_pred EEECCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---
Confidence 77777664 22234445666666666666321111112345566665541 12244555555555555544432
Q ss_pred HHHhCCcccceeeccccccccccc-cccccccEEEeec
Q 039643 253 ELISKFPLLEDLSVSSSQPLERVK-FSSNLLKRVAFLF 289 (520)
Q Consensus 253 ~ll~~l~~L~~L~L~~~~~l~~~~-~~f~~L~~L~L~~ 289 (520)
-++.+++|+.|.++++..-. ++ ..+++|++|++++
T Consensus 207 -~l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 207 -DLNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSV 242 (457)
T ss_dssp -CCTTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCS
T ss_pred -ccccCCCCCEEECcCCcccc-cCccccCCCCEEEeeC
Confidence 14455555555555544211 11 1234455555544
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.03 E-value=8.6e-10 Score=111.19 Aligned_cols=208 Identities=13% Similarity=0.071 Sum_probs=111.7
Q ss_pred CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
..++.|++... ....+|. .+..+++|++|+|++|.+.. |..+.++++|++|+|+++.+.. ++. ...+.
T Consensus 52 ~~l~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~ 122 (330)
T 1xku_A 52 PDTALLDLQNN-----KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKT 122 (330)
T ss_dssp TTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTT
T ss_pred CCCeEEECCCC-----cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhccc
Confidence 45666666443 1223333 45566777777777765532 4456677777777777665521 000 11366
Q ss_pred cceeeeeccCCc--ceeccccccccceEEEecccCCC----CceeeeCCceeEEEeccc----cccCCCCCcceEEeccc
Q 039643 175 LEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSS----ELESIVAPSLQQLTLVRV----IVVATCPNLKKLHLSEI 244 (520)
Q Consensus 175 LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~----~~~~i~aP~L~~L~l~~~----~~~~~l~~L~~L~L~~~ 244 (520)
|+.|++.++... ..-.+.++++|+.|+++++.... ....-..++|++|.+... ....-.++|++|+++++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n 202 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTS
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCC
Confidence 777777766421 11123346777777777665321 111223566777766421 11112366777777766
Q ss_pred ccchhHHHHHHhCCcccceeecccccccc--c-cccccccccEEEeecCCchh--HHhcCCCCccEeEecccCCCC
Q 039643 245 VLEDQEFHELISKFPLLEDLSVSSSQPLE--R-VKFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 245 ~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~-~~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~~ 315 (520)
.+++. ....+.++++|+.|.++++..-. + .-..+++|++|+++++.-.. ..+..+|+|+.|++.++.+..
T Consensus 203 ~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 203 KITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred cCCcc-CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence 65432 12345667777777777765321 1 11134567777776643221 334566777777777766554
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.03 E-value=1.4e-09 Score=108.91 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=79.4
Q ss_pred hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
..++++|++... ....+|+ +..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+- .. +..++.|+
T Consensus 62 l~~L~~L~L~~n-----~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~ 132 (308)
T 1h6u_A 62 LNNLIGLELKDN-----QITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQ 132 (308)
T ss_dssp CTTCCEEECCSS-----CCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCC
T ss_pred cCCCCEEEccCC-----cCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCC
Confidence 478999999764 2334555 778899999999999886656788999999999999988431 12 68899999
Q ss_pred eeeeeccCCcceeccccccccceEEEecccC
Q 039643 177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSR 207 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~ 207 (520)
.|++.+|..-....+.++++|+.|+++++..
T Consensus 133 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EEECCSSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEECCCCccCcCccccCCCCccEEEccCCcC
Confidence 9999998632222255689999999999864
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.03 E-value=2.3e-09 Score=116.28 Aligned_cols=147 Identities=10% Similarity=0.052 Sum_probs=94.6
Q ss_pred CCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--ccc---cccccccEEEeecCCchh----HHhcCCC
Q 039643 231 ATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVK---FSSNLLKRVAFLFCRSLR----AVDLDTP 301 (520)
Q Consensus 231 ~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~---~~f~~L~~L~L~~c~~l~----~lL~~~P 301 (520)
..+++|++|+++++.+++. ....++++++|+.|.++++..-. ... ..+++|++|+++++.... ..+...+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 5678899999988877653 23456889999999999876421 111 245789999998754322 3456789
Q ss_pred CccEeEecccCCCCcccccccCCCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccc
Q 039643 302 NLLSFTFESVRIPTISISASHQCPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKN 380 (520)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~l~~~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~ 380 (520)
+|+.|+++++.+.......+. ..++ +.+.++.+. ++ ..-+.+++.|+.|.+.. +....++..
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~i-------p~~~~~l~~L~~L~L~~--N~l~~l~~~------ 491 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SI-------PKDVTHLQALQELNVAS--NQLKSVPDG------ 491 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CC-------CTTTTSSCCCSEEECCS--SCCCCCCTT------
T ss_pred cCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-cc-------ChhhcCCCCCCEEECCC--CCCCCCCHH------
Confidence 999999999987542011221 2343 455666555 22 22233889999999984 433344433
Q ss_pred cCCCCcccccceEEEE
Q 039643 381 RSPSLPFQVGNMRLIV 396 (520)
Q Consensus 381 asp~l~~~l~~L~l~~ 396 (520)
+-..++ .|++|.+..
T Consensus 492 ~~~~l~-~L~~L~l~~ 506 (562)
T 3a79_B 492 VFDRLT-SLQYIWLHD 506 (562)
T ss_dssp STTTCT-TCCCEECCS
T ss_pred HHhcCC-CCCEEEecC
Confidence 134457 889999884
No 62
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.03 E-value=3.7e-10 Score=116.55 Aligned_cols=218 Identities=17% Similarity=0.158 Sum_probs=133.4
Q ss_pred hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-----CCccc-------CCCCCCCEEEecceecChH-
Q 039643 97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-----EPLIA-------INLNSLKNLSLQRVYANEQ- 163 (520)
Q Consensus 97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-----~p~~~-------~~l~sLk~L~L~~v~~~~~- 163 (520)
..++++|++............++..+..+++|++|+|++|.+. .|... ..+++|++|+|+++.+++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3678988886531111112235555667899999999987442 12222 6889999999999988443
Q ss_pred --HHHHHHhcCCCcceeeeeccCCc----ceec--cccc---------cccceEEEecccCCCCce------eeeCCcee
Q 039643 164 --MVHNLIAECCSLEDLSLRYTLGL----KFFS--VSKA---------HKLKNMVIVDYSRSSELE------SIVAPSLQ 220 (520)
Q Consensus 164 --~l~~Lls~CP~LE~L~L~~c~~l----~~l~--I~~~---------~~Lk~L~I~~~~~~~~~~------~i~aP~L~ 220 (520)
.+...+..|+.|+.|+|.+|... ..+. +..+ ++|+.|+++++......+ ....++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 45666788999999999998631 1110 1122 799999999887431111 12456777
Q ss_pred EEEeccc------------cccCCCCCcceEEecccccchh---HHHHHHhCCcccceeeccccccccc----c--c---
Q 039643 221 QLTLVRV------------IVVATCPNLKKLHLSEIVLEDQ---EFHELISKFPLLEDLSVSSSQPLER----V--K--- 276 (520)
Q Consensus 221 ~L~l~~~------------~~~~~l~~L~~L~L~~~~~~~~---~~~~ll~~l~~L~~L~L~~~~~l~~----~--~--- 276 (520)
+|.+... ..+..+++|+.|+|+++.+++. .+...+..+++|+.|.|++|..-.. + .
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 7777520 1345677777777777766532 2345567777777777777663110 1 1
Q ss_pred cccccccEEEeecCCchh-------HHh-cCCCCccEeEecccCCC
Q 039643 277 FSSNLLKRVAFLFCRSLR-------AVD-LDTPNLLSFTFESVRIP 314 (520)
Q Consensus 277 ~~f~~L~~L~L~~c~~l~-------~lL-~~~P~L~~L~l~~~~~~ 314 (520)
...++|++|+|++|.-.. ..+ .++|+|+.|++.++.+.
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 114567777777653211 222 44677777777766543
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.02 E-value=1.7e-09 Score=108.91 Aligned_cols=208 Identities=15% Similarity=0.125 Sum_probs=145.0
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.++++|++.... .....|..+..+++|++|+|+++.+.. |... +++|++|++.++.+.. .....+.+++.|+
T Consensus 76 ~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 148 (330)
T 1xku_A 76 KNLHTLILINNK----ISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITK-VRKSVFNGLNQMI 148 (330)
T ss_dssp TTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCB-BCHHHHTTCTTCC
T ss_pred CCCCEEECCCCc----CCeeCHHHhcCCCCCCEEECCCCcCCccChhh--cccccEEECCCCcccc-cCHhHhcCCcccc
Confidence 679999986641 122337778889999999999987743 4433 3899999999998742 2234568899999
Q ss_pred eeeeeccCC----cceeccccccccceEEEecccCCCCceeeeCCceeEEEecc-------ccccCCCCCcceEEecccc
Q 039643 177 DLSLRYTLG----LKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIV 245 (520)
Q Consensus 177 ~L~L~~c~~----l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~ 245 (520)
.|++.++.. .....+.++++|+.|+++++....-... ..++|++|.+.. +..+..+++|++|+++++.
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 999999853 2223355689999999999874211111 138999999862 3457889999999999887
Q ss_pred cchhHHHHHHhCCcccceeecccccccc-ccc-cccccccEEEeecCCchh---HH------hcCCCCccEeEecccCCC
Q 039643 246 LEDQEFHELISKFPLLEDLSVSSSQPLE-RVK-FSSNLLKRVAFLFCRSLR---AV------DLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 246 ~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~-~~f~~L~~L~L~~c~~l~---~l------L~~~P~L~~L~l~~~~~~ 314 (520)
+++. ....+.++++|+.|+++++.... +.. ..+++|++|++.++.-.. .. ....+.|+.+++.++.+.
T Consensus 228 l~~~-~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 228 ISAV-DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCEE-CTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred Ccee-ChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 7642 22356789999999999987421 111 245789999998753211 11 123477888888887654
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.00 E-value=1.9e-09 Score=118.45 Aligned_cols=248 Identities=18% Similarity=0.128 Sum_probs=150.8
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.+++.|++... ....+|..+. ++|++|+|++|.+.. |. .+++|++|+|+++.+.. ++ ..+++|+
T Consensus 40 ~~l~~L~ls~n-----~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp---~~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGES-----GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LP---VLPPGLL 104 (622)
T ss_dssp HCCCEEECCSS-----CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CC---CCCTTCC
T ss_pred CCCcEEEecCC-----CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CC---CCCCCCC
Confidence 46888888664 2347787765 799999999997754 43 68999999999998732 11 1679999
Q ss_pred eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccc--ccc-CCCCCcceEEecccccchhHHHH
Q 039643 177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRV--IVV-ATCPNLKKLHLSEIVLEDQEFHE 253 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~--~~~-~~l~~L~~L~L~~~~~~~~~~~~ 253 (520)
.|+|++|.. ..+.- ..++|+.|+++++... .+....++|++|.+... ..+ ..+++|+.|+++++.++.-
T Consensus 105 ~L~Ls~N~l-~~l~~-~l~~L~~L~L~~N~l~--~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l---- 176 (622)
T 3g06_A 105 ELSIFSNPL-THLPA-LPSGLCKLWIFGNQLT--SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL---- 176 (622)
T ss_dssp EEEECSCCC-CCCCC-CCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC----
T ss_pred EEECcCCcC-CCCCC-CCCCcCEEECCCCCCC--cCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCC----
Confidence 999998852 22222 3688999999888632 12223488888888631 112 2456788888887766541
Q ss_pred HHhCCcccceeeccccccccccccccccccEEEeecCCchhHHhcCCCCccEeEecccCCCCcccccccCCCcE-EEEec
Q 039643 254 LISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPTISISASHQCPWN-VFFVH 332 (520)
Q Consensus 254 ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~l~~~~L~-v~~~~ 332 (520)
-..+++|+.|.++++.. ..++....+|+.|.+.++. +..+-...++|+.|+++++.+..+ ...+ ..++ +.+.+
T Consensus 177 -~~~~~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~l-p~~l--~~L~~L~Ls~ 250 (622)
T 3g06_A 177 -PMLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSL-PVLP--SELKELMVSG 250 (622)
T ss_dssp -CCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCC-CCCC--TTCCEEECCS
T ss_pred -cccCCCCcEEECCCCCC-CCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcC-CCCC--CcCcEEECCC
Confidence 15567888888887663 2233334677777776642 222223446777777777765544 1111 1233 34444
Q ss_pred cccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccccCCCCcccccceEEE
Q 039643 333 EHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKNRSPSLPFQVGNMRLI 395 (520)
Q Consensus 333 ~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~asp~l~~~l~~L~l~ 395 (520)
+.+.+- .. ..+.|+.|.+.. |....++..+. .++ +|++|.+.
T Consensus 251 N~L~~l--------p~---~~~~L~~L~Ls~--N~L~~lp~~l~-------~l~-~L~~L~L~ 292 (622)
T 3g06_A 251 NRLTSL--------PM---LPSGLLSLSVYR--NQLTRLPESLI-------HLS-SETTVNLE 292 (622)
T ss_dssp SCCSCC--------CC---CCTTCCEEECCS--SCCCSCCGGGG-------GSC-TTCEEECC
T ss_pred CCCCcC--------Cc---ccccCcEEeCCC--CCCCcCCHHHh-------hcc-ccCEEEec
Confidence 444421 11 456677776663 33233443332 345 66777766
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.00 E-value=6.2e-10 Score=112.42 Aligned_cols=124 Identities=10% Similarity=0.026 Sum_probs=61.3
Q ss_pred cCCCCCcceEEecccccchh-HHHHHHhCCcccceeeccccccccccc-cccccccEEEeecCCchh---HHhcCCCCcc
Q 039643 230 VATCPNLKKLHLSEIVLEDQ-EFHELISKFPLLEDLSVSSSQPLERVK-FSSNLLKRVAFLFCRSLR---AVDLDTPNLL 304 (520)
Q Consensus 230 ~~~l~~L~~L~L~~~~~~~~-~~~~ll~~l~~L~~L~L~~~~~l~~~~-~~f~~L~~L~L~~c~~l~---~lL~~~P~L~ 304 (520)
+..+++|++|+++++.++.. .....+.++ +|+.|.++++..-. ++ ..+.+|++|+++++.... ..+..+++|+
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 220 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 220 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCS
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccccCCCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 45666777777766655421 112233444 66777776655311 11 123466777666542211 3345666777
Q ss_pred EeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643 305 SFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL 363 (520)
Q Consensus 305 ~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~ 363 (520)
.|+++++.+..+....+.. ..++ +.+..+.+. .+ ...+.+++.|+.|.+..
T Consensus 221 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l-------p~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV-------PAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC-------CTTGGGCTTCCEEECCS
T ss_pred EEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec-------ChhhhcCccCCEEECCC
Confidence 7777766554331001111 1232 334444443 11 22246677788877774
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.00 E-value=2.1e-10 Score=115.11 Aligned_cols=181 Identities=16% Similarity=0.106 Sum_probs=114.2
Q ss_pred cCCCccEEEEeccccC--CCccc--CCCCCCCEEEecceecCh--HHHHHHHh-cCCCcceeeeeccCC--cceeccccc
Q 039643 124 SAKLLTTLVLNGCRLD--EPLIA--INLNSLKNLSLQRVYANE--QMVHNLIA-ECCSLEDLSLRYTLG--LKFFSVSKA 194 (520)
Q Consensus 124 ~~~sL~~L~L~~c~l~--~p~~~--~~l~sLk~L~L~~v~~~~--~~l~~Lls-~CP~LE~L~L~~c~~--l~~l~I~~~ 194 (520)
.+++|++|+|++|.+. .|... ..+++|++|+|+++.+.+ ..+..+.. .++.|++|++.++.- ...-.+.++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6789999999998774 25544 789999999999988732 23333311 138899999988853 222234557
Q ss_pred cccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch--hHHHHHHhCCcccceeeccccccc
Q 039643 195 HKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED--QEFHELISKFPLLEDLSVSSSQPL 272 (520)
Q Consensus 195 ~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~ll~~l~~L~~L~L~~~~~l 272 (520)
++|+.|+++++... ....+ | ....+..+++|++|+++++.++. .....++.++++|+.|+++++..-
T Consensus 173 ~~L~~L~Ls~N~l~-~~~~~--~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 173 PALSTLDLSDNPEL-GERGL--I--------SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp SSCCEEECCSCTTC-HHHHH--H--------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred CCCCEEECCCCCcC-cchHH--H--------HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 88888888887631 00000 0 00113677888888888877763 334466778888888888887642
Q ss_pred ccc--c--cccccccEEEeecCCchhHHhcC-CCCccEeEecccCCCCc
Q 039643 273 ERV--K--FSSNLLKRVAFLFCRSLRAVDLD-TPNLLSFTFESVRIPTI 316 (520)
Q Consensus 273 ~~~--~--~~f~~L~~L~L~~c~~l~~lL~~-~P~L~~L~l~~~~~~~~ 316 (520)
... . ....+|++|+++++.- ..+-.. .++|+.|+++++.+..+
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLPAKLSVLDLSYNRLDRN 289 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCCSEEEEEECCSSCCCSC
T ss_pred cccchhhhhhcCCCCEEECCCCcc-ChhhhhccCCceEEECCCCCCCCC
Confidence 211 1 1246788888877432 211111 16888888888876654
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.99 E-value=4.7e-10 Score=110.17 Aligned_cols=186 Identities=16% Similarity=0.066 Sum_probs=89.6
Q ss_pred CCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccceEE
Q 039643 126 KLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKNMV 201 (520)
Q Consensus 126 ~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~L~ 201 (520)
++|++|+|+++.+.. +..+.++++|++|+|+++.+.. .....+.+++.|+.|++.++.-.. .-.+.++++|+.|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 356666666655422 2245556666666666655421 001123455666666666654211 11233456666666
Q ss_pred EecccCCC-Cc-eeeeCCceeEEEecc--------ccccCCCCCcceEEecccccchhHHHHHHhCCcccc----eeecc
Q 039643 202 IVDYSRSS-EL-ESIVAPSLQQLTLVR--------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLE----DLSVS 267 (520)
Q Consensus 202 I~~~~~~~-~~-~~i~aP~L~~L~l~~--------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~----~L~L~ 267 (520)
+.++.... .. .....++|++|.+.. +..+.++++|++|+++++.+++. ....+..+++++ .|.++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhhhhhccccceeeecC
Confidence 66554211 00 111234444444421 22356677777777777665431 111222233333 56666
Q ss_pred cccccc--ccccccccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643 268 SSQPLE--RVKFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 268 ~~~~l~--~~~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~ 313 (520)
++..-. +......+|++|+++++.-.. ..+..+|+|+.|+++++.+
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 655311 111122367777776643211 3445677777777766643
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.98 E-value=1.6e-09 Score=119.96 Aligned_cols=251 Identities=17% Similarity=0.129 Sum_probs=120.9
Q ss_pred CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.++++|++... ....+|+ .+..+++|++|+|+++.+.. |..+.++++|++|+|+++.+.. .....+++|+.
T Consensus 25 ~~l~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHN-----QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSS-----CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCCcEEECCCC-----CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCC
Confidence 45666666543 1223333 45556777777777665532 3345566777777777665521 00112456677
Q ss_pred cceeeeeccCC--cceeccccccccceEEEecccCCC--CceeeeCCceeEEEeccc-------cc--cCCCCCcceEEe
Q 039643 175 LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVRV-------IV--VATCPNLKKLHL 241 (520)
Q Consensus 175 LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~~-------~~--~~~l~~L~~L~L 241 (520)
|++|++.+|.. +..-.+.++++|+.|+++++.... .......++|++|.+... .. ...+++|++|++
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 77777776642 111224446677777777665311 111123455666555310 01 123355666666
Q ss_pred cccccchhHHHHHHhCCcccceeecccccccc----c--cccccccccEEEeecCCchh---HHhcCC--CCccEeEecc
Q 039643 242 SEIVLEDQEFHELISKFPLLEDLSVSSSQPLE----R--VKFSSNLLKRVAFLFCRSLR---AVDLDT--PNLLSFTFES 310 (520)
Q Consensus 242 ~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~----~--~~~~f~~L~~L~L~~c~~l~---~lL~~~--P~L~~L~l~~ 310 (520)
+.+.+++. ....++.+++|+.|.+..+.... . ......+|++|.+.++.... ..+..+ ++|+.|++++
T Consensus 179 ~~n~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 179 SSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp TTCCCCCB-CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCccccc-ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 55444321 12234455555555555443210 0 00122467777776543211 222233 3477777777
Q ss_pred cCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEE
Q 039643 311 VRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLIN 362 (520)
Q Consensus 311 ~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~ 362 (520)
+.+..+....+.. ..++ +.+.++.+.+.+ ...+.+++.|+.+.+.
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-------SHSLHGLFNVRYLNLK 304 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCCBSEEC-------TTTTTTCTTCCEEECT
T ss_pred CCcCccCcccccCcccccEeeCCCCccCccC-------hhhhcCCCCccEEecc
Confidence 7654321111111 1233 344444444321 2334567777777775
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.96 E-value=4.6e-10 Score=121.92 Aligned_cols=239 Identities=15% Similarity=0.143 Sum_probs=151.3
Q ss_pred ccCcccccCCCccEE-EEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee-cc-c
Q 039643 117 TLPQAIYSAKLLTTL-VLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF-SV-S 192 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L-~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l-~I-~ 192 (520)
.++..+..|++|+.| .+..... ..+.....+++|++|+|.++.+++..+..++.+||+|+.|++.+|.....+ .+ .
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~ 335 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHH
Confidence 355677889999998 3433221 123334478999999999999888888888999999999999998321111 11 1
Q ss_pred cccccceEEEecc--------cCCCCc----eeeeCCceeEEEecc-------cccc-CCCCCcceEEec--c----ccc
Q 039643 193 KAHKLKNMVIVDY--------SRSSEL----ESIVAPSLQQLTLVR-------VIVV-ATCPNLKKLHLS--E----IVL 246 (520)
Q Consensus 193 ~~~~Lk~L~I~~~--------~~~~~~----~~i~aP~L~~L~l~~-------~~~~-~~l~~L~~L~L~--~----~~~ 246 (520)
++++|++|++.++ ...... +.-.+|+|++|.+.+ ...+ ..+++|++|++. + +.+
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 3789999999653 111110 112379999996642 1122 358999999998 3 455
Q ss_pred c----hhHHHHHHhCCcccceeecccccc---ccccccccccccEEEeecCCchh----HHhcCCCCccEeEecccCCCC
Q 039643 247 E----DQEFHELISKFPLLEDLSVSSSQP---LERVKFSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 247 ~----~~~~~~ll~~l~~L~~L~L~~~~~---l~~~~~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~~~~~~ 315 (520)
+ +..+..++.++++|+.|.|++... +.......++|++|.|+.|.... .+...+|+|+.|+++++.+..
T Consensus 416 ~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 416 TLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp TCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred cCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 5 445677889999999999976211 01111236789999998876422 444779999999999998742
Q ss_pred ccc-ccccCC-CcE-EEEeccccccChhhHHHHHHHHHhccccccceEE
Q 039643 316 ISI-SASHQC-PWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLI 361 (520)
Q Consensus 316 ~~~-~~l~~~-~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i 361 (520)
... .....+ .|+ +.+.++.... ..++.+....+.|+...+
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSVSF------GACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCCBH------HHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHhCCCCCEEeeeCCCCCH------HHHHHHHHhCCCCEEEEe
Confidence 101 111211 244 5566666542 223445455566654333
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.95 E-value=8.7e-10 Score=108.76 Aligned_cols=187 Identities=13% Similarity=0.008 Sum_probs=131.4
Q ss_pred hCCceEEEEEecCCCCCcccccC-cccccCCCccEEEEeccccCC--CcccCCCCCCCEEEeccee-cChHHHHHHHhcC
Q 039643 97 GNGVKELHIVVESSPHESAYTLP-QAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVY-ANEQMVHNLIAEC 172 (520)
Q Consensus 97 ~~~VkeL~L~~~~~~~~~~~~LP-~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~-~~~~~l~~Lls~C 172 (520)
..++++|++... ....+| ..+..+++|++|+|+++.+.. |..+.++++|++|+|+++. +.. .....+.++
T Consensus 31 ~~~l~~L~l~~n-----~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~-~~~~~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGN-----RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGL 104 (285)
T ss_dssp CTTCSEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-CCTTTTTTC
T ss_pred CCCceEEEeeCC-----cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc-cCHHHhcCC
Confidence 357888888653 223344 456778999999999986632 5678889999999999886 422 112235678
Q ss_pred CCcceeeeeccCC--cceeccccccccceEEEecccCCC-C-ceeeeCCceeEEEecc-------ccccCCCCCcceEEe
Q 039643 173 CSLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSS-E-LESIVAPSLQQLTLVR-------VIVVATCPNLKKLHL 241 (520)
Q Consensus 173 P~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~-~-~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L 241 (520)
+.|+.|++.++.. ...-.+.++++|+.|+++++.... + ...-..++|++|.+.. ...+..+++|++|++
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 9999999999853 222235568999999999987421 1 1123568999999862 223678999999999
Q ss_pred cccccchhHHHHHHhCCcccceeecccccccc--cc-ccccccccEEEeecC
Q 039643 242 SEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFC 290 (520)
Q Consensus 242 ~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c 290 (520)
+++.+++. ....+.++++|+.|+++++.... +. -..+++|++|++.++
T Consensus 185 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 185 HQNRVAHV-HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CSSCCCEE-CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CCCccccc-CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 98877652 23457789999999999986422 11 124578999999873
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.95 E-value=9.9e-10 Score=113.31 Aligned_cols=93 Identities=11% Similarity=0.148 Sum_probs=66.8
Q ss_pred ccccCcccccCCCccEEEEeccccCC------CcccCCCCCCCEEEecceecC------hHHH---HHHHhcCCCcceee
Q 039643 115 AYTLPQAIYSAKLLTTLVLNGCRLDE------PLIAINLNSLKNLSLQRVYAN------EQMV---HNLIAECCSLEDLS 179 (520)
Q Consensus 115 ~~~LP~~l~~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~L~~v~~~------~~~l---~~Lls~CP~LE~L~ 179 (520)
...++..+..+++|++|+|++|.+.. +..+..+++|++|+|+++.+. +..+ ...+..|+.|+.|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 34677788888999999999987643 123568999999999987442 1233 23357899999999
Q ss_pred eeccCCcc----ee--ccccccccceEEEecccC
Q 039643 180 LRYTLGLK----FF--SVSKAHKLKNMVIVDYSR 207 (520)
Q Consensus 180 L~~c~~l~----~l--~I~~~~~Lk~L~I~~~~~ 207 (520)
|++|.... .+ .+..+++|+.|++++|..
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 99985221 11 234578999999999874
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.94 E-value=2.2e-09 Score=105.23 Aligned_cols=179 Identities=16% Similarity=0.062 Sum_probs=112.5
Q ss_pred cccCcccccCCCccEEEEeccccCC-C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceecc
Q 039643 116 YTLPQAIYSAKLLTTLVLNGCRLDE-P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSV 191 (520)
Q Consensus 116 ~~LP~~l~~~~sL~~L~L~~c~l~~-p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I 191 (520)
..+|..+. ++|++|+|+++.+.. + ..+.++++|++|+|+++.+.. .....+.+++.|+.|++.++.-. ..-.+
T Consensus 29 ~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 105 (270)
T 2o6q_A 29 TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVF 105 (270)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHc
Confidence 34665543 578999999887643 3 357788999999998887631 11123466888888888887521 11123
Q ss_pred ccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccc
Q 039643 192 SKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQP 271 (520)
Q Consensus 192 ~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~ 271 (520)
.++++|+.|+++++.... + .+..+..+++|++|+++++.++. .....++++++|+.|.++++..
T Consensus 106 ~~l~~L~~L~l~~n~l~~----~-----------~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKS----L-----------PPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp TTCSSCCEEECCSSCCCC----C-----------CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC
T ss_pred ccccCCCEEECCCCccCe----e-----------CHHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcC
Confidence 446788888888775310 0 01234667788888887766653 1223466778888888877653
Q ss_pred cc--cc-ccccccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643 272 LE--RV-KFSSNLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 272 l~--~~-~~~f~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~ 313 (520)
.. +. -..+++|++|+++++.-.. ..+..+|+|+.|++.++++
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 21 11 1134678888887643211 3456788888888887754
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.93 E-value=6.6e-09 Score=112.61 Aligned_cols=100 Identities=17% Similarity=0.068 Sum_probs=59.7
Q ss_pred CCceEEEEEecCCCCCcccccC-cccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLP-QAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP-~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.++++|++... ....+| ..+..+++|++|+|++|.+.. |..+.++++|++|+|+++.+.. ++.. .++.
T Consensus 52 ~~L~~L~Ls~N-----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQN-----SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCC--PMAS 122 (562)
T ss_dssp TTCCEEECCSS-----CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE--ECSC--CCTT
T ss_pred CCcCEEECCCC-----CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc--cCcc--cccc
Confidence 56777777654 122333 456667777888887776532 4456677777777777776531 1111 5677
Q ss_pred cceeeeeccCCcc-e--eccccccccceEEEeccc
Q 039643 175 LEDLSLRYTLGLK-F--FSVSKAHKLKNMVIVDYS 206 (520)
Q Consensus 175 LE~L~L~~c~~l~-~--l~I~~~~~Lk~L~I~~~~ 206 (520)
|+.|+++++.... . -.+.++++|+.|+++++.
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 7777777765211 1 234446667777766654
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.91 E-value=8.7e-10 Score=110.54 Aligned_cols=125 Identities=14% Similarity=0.036 Sum_probs=84.6
Q ss_pred cccCCCCCcceEEecccccchhH-HHHH--HhCCcccceeecccccccc--ccc----cccccccEEEeecCCchh----
Q 039643 228 IVVATCPNLKKLHLSEIVLEDQE-FHEL--ISKFPLLEDLSVSSSQPLE--RVK----FSSNLLKRVAFLFCRSLR---- 294 (520)
Q Consensus 228 ~~~~~l~~L~~L~L~~~~~~~~~-~~~l--l~~l~~L~~L~L~~~~~l~--~~~----~~f~~L~~L~L~~c~~l~---- 294 (520)
..+..+++|++|+++++.+.+.. ...- ++++++|+.|.++++..-. ... ..+++|++|+++++.-..
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 35678999999999998866531 2222 3889999999999987421 111 134789999998754322
Q ss_pred HHhcCCCCccEeEecccCCCCcccccccCCCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEe
Q 039643 295 AVDLDTPNLLSFTFESVRIPTISISASHQCPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINL 363 (520)
Q Consensus 295 ~lL~~~P~L~~L~l~~~~~~~~~~~~l~~~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~ 363 (520)
......++|+.|+++++.+..+ ...+. ..++ +.+.++.+.+. .. +.+++.|+.+.+..
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-~~L~~L~Ls~N~l~~~--------p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLKQV-PKGLP-AKLSVLDLSYNRLDRN--------PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCSSC-CSSCC-SEEEEEECCSSCCCSC--------CC-TTTSCEEEEEECTT
T ss_pred hhhhhcCCCCEEECCCCccChh-hhhcc-CCceEEECCCCCCCCC--------hh-HhhCCCCCEEeccC
Confidence 2334578999999999987754 22222 3354 55677777654 22 56788899888874
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.91 E-value=1.3e-09 Score=110.13 Aligned_cols=189 Identities=16% Similarity=0.049 Sum_probs=85.7
Q ss_pred ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccc
Q 039643 121 AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHK 196 (520)
Q Consensus 121 ~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~ 196 (520)
.+..+++|++|+|++|.+.. |..+.++++|++|+|+++.+.. ++. ...+.|++|++.++.. +..-.+.++++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~L~l~~n~i~~~~~~~~~~l~~ 148 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRN 148 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCEEECCSSCCCCCCSGGGSSCSS
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCEEECCCCccCccCHhHhCCCcc
Confidence 44555666666666654422 3345556666666666555421 000 0125566666655531 11111334556
Q ss_pred cceEEEecccCC---CCceeeeCCceeEEEeccc----cccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccc
Q 039643 197 LKNMVIVDYSRS---SELESIVAPSLQQLTLVRV----IVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSS 269 (520)
Q Consensus 197 Lk~L~I~~~~~~---~~~~~i~aP~L~~L~l~~~----~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~ 269 (520)
|+.|+++++... .....+...+|++|.+... ....-.++|++|+++++.+++. ....+.++++|+.|.++++
T Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC-CTTSSTTCTTCSCCBCCSS
T ss_pred CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCC
Confidence 666666655421 0011111124555444310 0001124566666665554431 1123455666666666665
Q ss_pred cccc--c-cccccccccEEEeecCCchh--HHhcCCCCccEeEecccCCC
Q 039643 270 QPLE--R-VKFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 270 ~~l~--~-~~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l~~~~~~ 314 (520)
..-. + .-..+++|++|+++++.-.. ..+..+|+|+.|+++++.+.
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence 4311 1 11123456666665532211 22455666666666666544
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.90 E-value=4.3e-09 Score=103.31 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=44.6
Q ss_pred cCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceeccccccccceEE
Q 039643 124 SAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSVSKAHKLKNMV 201 (520)
Q Consensus 124 ~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I~~~~~Lk~L~ 201 (520)
.+++|+.|.++++.+...+....+++|++|+|.++.+.+- . -+..++.|+.|++.+|.-- ..-.+.++++|+.|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3456666666666554434456666777777766665321 1 2456666677666666421 111133456666666
Q ss_pred Eeccc
Q 039643 202 IVDYS 206 (520)
Q Consensus 202 I~~~~ 206 (520)
++++.
T Consensus 116 L~~n~ 120 (272)
T 3rfs_A 116 LVENQ 120 (272)
T ss_dssp CTTSC
T ss_pred CCCCc
Confidence 66665
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.90 E-value=5e-09 Score=104.12 Aligned_cols=166 Identities=16% Similarity=0.080 Sum_probs=75.1
Q ss_pred CCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEec
Q 039643 125 AKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVD 204 (520)
Q Consensus 125 ~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~ 204 (520)
+++|+.|.+++|.+...+.+..+++|++|+|+++.+.+-. . ++.++.|+.|++.++.--..-.+.++++|+.|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCC
Confidence 4455566665554433233455566666666655552111 1 455566666666555321111133355566666655
Q ss_pred ccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc-cccccccccc
Q 039643 205 YSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVKFSSNLLK 283 (520)
Q Consensus 205 ~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~ 283 (520)
+.... + ..+..+++|+.|+++++.+++- ..+.++++|+.|.++++..-. +.-..+++|+
T Consensus 122 n~i~~--~---------------~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~ 181 (291)
T 1h6t_A 122 NGISD--I---------------NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181 (291)
T ss_dssp SCCCC--C---------------GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred CcCCC--C---------------hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchhhcCCCccC
Confidence 54210 0 0123344444444444443321 234444555555554443211 0011234455
Q ss_pred EEEeecCCchh-HHhcCCCCccEeEecccCC
Q 039643 284 RVAFLFCRSLR-AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 284 ~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~ 313 (520)
+|+++++.-.. ..+..+|+|+.|++.++.+
T Consensus 182 ~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 182 NLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred EEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 55554432111 2245666777777766643
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.87 E-value=4.3e-09 Score=101.05 Aligned_cols=171 Identities=12% Similarity=0.070 Sum_probs=89.1
Q ss_pred CCccEEEEeccccCC-Cc-ccCCCCCCCEEEeccee-cChHHHHHHHhcCCCcceeeeeccCCccee---ccccccccce
Q 039643 126 KLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVY-ANEQMVHNLIAECCSLEDLSLRYTLGLKFF---SVSKAHKLKN 199 (520)
Q Consensus 126 ~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~-~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l---~I~~~~~Lk~ 199 (520)
.+|++|+|+++.+.. |+ .+.++++|++|+|+++. +.. .....+.+++.|+.|++.+|..+..+ .+.++++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 377788888776633 33 46677888888887775 421 00112456778888888774434332 2334677777
Q ss_pred EEEecccCCCCceeeeCCceeEEEeccccccCCCCCcc---eEEeccc-ccchhHHHHHHhCCcccc-eeeccccccc--
Q 039643 200 MVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLK---KLHLSEI-VLEDQEFHELISKFPLLE-DLSVSSSQPL-- 272 (520)
Q Consensus 200 L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~---~L~L~~~-~~~~~~~~~ll~~l~~L~-~L~L~~~~~l-- 272 (520)
|+++++.... .| .+..+++|+ .++++++ .++. .....++++++|+ .|.++++..-
T Consensus 110 L~l~~n~l~~------lp-----------~~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 110 LGIFNTGLKM------FP-----------DLTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp EEEEEECCCS------CC-----------CCTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred EeCCCCCCcc------cc-----------ccccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCccc
Confidence 7777775310 01 123333443 5555554 4332 1112345566666 6666554421
Q ss_pred cccccccccccEEEeecCCchh----HHhcCC-CCccEeEecccCCCC
Q 039643 273 ERVKFSSNLLKRVAFLFCRSLR----AVDLDT-PNLLSFTFESVRIPT 315 (520)
Q Consensus 273 ~~~~~~f~~L~~L~L~~c~~l~----~lL~~~-P~L~~L~l~~~~~~~ 315 (520)
........+|++|++.++..+. ..+..+ ++|+.|+++++.+..
T Consensus 172 ~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 1101111356666665543222 334455 666666666665543
No 79
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.87 E-value=3.3e-09 Score=116.28 Aligned_cols=144 Identities=20% Similarity=0.172 Sum_probs=71.9
Q ss_pred ccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceE
Q 039643 121 AIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNM 200 (520)
Q Consensus 121 ~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L 200 (520)
.+..+++|+.|+|++|.+...+.+..+++|+.|+|+++.+.+- + -+..++.|+.|+|.+|.....-.+.++++|+.|
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 136 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 136 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEE
T ss_pred HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEecCCCCCCCccccCCCccCEE
Confidence 3556677777777776654322266677777777777666321 1 245667777777776642111123446677777
Q ss_pred EEecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 201 VIVDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 201 ~I~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
++++|....-......++|+.|.+.. ...+..+++|+.|+|+++.+++- ..+..+++|+.|.|+++.
T Consensus 137 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 137 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEE
T ss_pred ECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCc
Confidence 77666532111111334444444431 11134444444444444444321 123444444444444443
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.82 E-value=1.4e-09 Score=108.90 Aligned_cols=180 Identities=14% Similarity=0.079 Sum_probs=95.2
Q ss_pred CCCccEEEEeccccC-C-Cccc--CCCCCCCEEEecceecChH--HHH-HHHhcCCCcceeeeeccCCcc--eecccccc
Q 039643 125 AKLLTTLVLNGCRLD-E-PLIA--INLNSLKNLSLQRVYANEQ--MVH-NLIAECCSLEDLSLRYTLGLK--FFSVSKAH 195 (520)
Q Consensus 125 ~~sL~~L~L~~c~l~-~-p~~~--~~l~sLk~L~L~~v~~~~~--~l~-~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~ 195 (520)
+++|++|+|++|.+. . |..+ ..+++|++|+|+++.+.+. .+. .-+..++.|+.|+|.+|.-.. .-.+.+++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 356888888887653 2 4444 6788888888888776321 111 223467888888888775311 12334567
Q ss_pred ccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch--hHHHHHHhCCcccceeecccccccc
Q 039643 196 KLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED--QEFHELISKFPLLEDLSVSSSQPLE 273 (520)
Q Consensus 196 ~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~ll~~l~~L~~L~L~~~~~l~ 273 (520)
+|+.|+++++.... ...+. ....+..+++|++|+++++.++. .....+++++++|+.|+|+++....
T Consensus 170 ~L~~L~Ls~N~l~~-~~~~~----------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 170 ALTSLDLSDNPGLG-ERGLM----------AALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp TCCEEECCSCTTCH-HHHHH----------TTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred CCCEEECCCCCCcc-chhhh----------HHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 78888887775210 00000 00112456666666666665542 2222345666677777776665321
Q ss_pred --cccc-cc---ccccEEEeecCCchhHHhcCCCCccEeEecccCCCC
Q 039643 274 --RVKF-SS---NLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 274 --~~~~-~f---~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~ 315 (520)
+... .+ ++|++|+++++.-..-.-.-.++|+.|+++++.+..
T Consensus 239 ~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 239 TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR 286 (310)
T ss_dssp CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS
T ss_pred cchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC
Confidence 1111 11 466666666532211000112566777776665554
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.82 E-value=1.3e-08 Score=101.15 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=20.9
Q ss_pred cCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 230 VATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 230 ~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
+..+++|++|+++++.++. .....+.++++|+.|.++++.
T Consensus 120 ~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 120 LRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp TTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSC
T ss_pred HcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCc
Confidence 4555566666666555432 122334555666666665554
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.81 E-value=5.1e-09 Score=102.76 Aligned_cols=190 Identities=17% Similarity=0.060 Sum_probs=125.8
Q ss_pred hCCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 97 GNGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 97 ~~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
-.++++|.+... ....+ +.+..+++|++|+|++|.+...+.+..+++|++|+|+++.+.+ .....+.+++.|+
T Consensus 40 l~~L~~L~l~~~-----~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNS-----DIKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTS-----CCCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCC
T ss_pred ccceeeeeeCCC-----Ccccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCC
Confidence 356888887553 11223 3567789999999999988665678899999999999998742 1123357889999
Q ss_pred eeeeeccCCc--ceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHH
Q 039643 177 DLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHEL 254 (520)
Q Consensus 177 ~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l 254 (520)
.|++.+|... ..-.+.++++|+.|+++++.... + . +..+..+++|++|+++++.+++ .....
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~--~-----------~~~~~~l~~L~~L~l~~n~l~~-~~~~~ 176 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--L--P-----------KGVFDKLTNLTELDLSYNQLQS-LPEGV 176 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--C--C-----------TTTTTTCTTCCEEECCSSCCCC-CCTTT
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCc--c--C-----------HHHhccCccCCEEECCCCCcCc-cCHHH
Confidence 9999998632 12224557899999999886311 0 0 1124567778888887776653 22344
Q ss_pred HhCCcccceeecccccccc--cc-ccccccccEEEeecCCchhHHhcCCCCccEeEecccCC
Q 039643 255 ISKFPLLEDLSVSSSQPLE--RV-KFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 255 l~~l~~L~~L~L~~~~~l~--~~-~~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~ 313 (520)
++++++|+.|.++++..-. +. -..+++|++|++.++. +...+|+|+.|.+..+.+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWINKH 234 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHHHHT
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHHHhC
Confidence 6677888888888776422 11 1235678888887643 124567777777665543
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.78 E-value=1.5e-08 Score=94.41 Aligned_cols=147 Identities=17% Similarity=0.175 Sum_probs=93.6
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED 177 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~ 177 (520)
.++++|++... ....+| .+..+++|++|++++|.+..++.+..+++|++|+|+++.+.+.... .++.+|.|+.
T Consensus 44 ~~L~~L~l~~n-----~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~ 116 (197)
T 4ezg_A 44 NSLTYITLANI-----NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTL 116 (197)
T ss_dssp HTCCEEEEESS-----CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCE
T ss_pred CCccEEeccCC-----CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCE
Confidence 45777777653 122455 5666777888888877665555667778888888877766432221 2456777888
Q ss_pred eeeeccCCcc--eeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHH
Q 039643 178 LSLRYTLGLK--FFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELI 255 (520)
Q Consensus 178 L~L~~c~~l~--~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll 255 (520)
|++.+|.... .-.+.++++|+.|++++|..... ...+..+++|++|+++++.+++- ..+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~----------------~~~l~~l~~L~~L~l~~n~i~~~---~~l 177 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD----------------IMPLKTLPELKSLNIQFDGVHDY---RGI 177 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC----------------CGGGGGCSSCCEEECTTBCCCCC---TTG
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc----------------cHhhcCCCCCCEEECCCCCCcCh---HHh
Confidence 8777775321 12234467777777777751000 01356788888888888777652 156
Q ss_pred hCCcccceeeccccc
Q 039643 256 SKFPLLEDLSVSSSQ 270 (520)
Q Consensus 256 ~~l~~L~~L~L~~~~ 270 (520)
.++++|+.|.++++.
T Consensus 178 ~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSCCEEEECBC-
T ss_pred ccCCCCCEEEeeCcc
Confidence 788889999888765
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.77 E-value=3.1e-08 Score=98.30 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=104.1
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED 177 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~ 177 (520)
.++++|++... ....+| .+..+++|++|+|++|.+...+.+..+++|+.|+|+++.+.+ +.. +..++.|+.
T Consensus 46 ~~L~~L~l~~~-----~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 46 NSIDQIIANNS-----DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKS 116 (291)
T ss_dssp HTCCEEECTTS-----CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCE
T ss_pred CcccEEEccCC-----CcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCE
Confidence 45788877553 122344 367789999999999987542338899999999999998843 122 678999999
Q ss_pred eeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhC
Q 039643 178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISK 257 (520)
Q Consensus 178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~ 257 (520)
|++.+|.--..-.+..+++|+.|+++++....- ..+..+++|++|+++++.+++... +.+
T Consensus 117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~l~~l~~L~~L~L~~N~l~~~~~---l~~ 176 (291)
T 1h6t_A 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-----------------TVLSRLTKLDTLSLEDNQISDIVP---LAG 176 (291)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----------------GGGGGCTTCSEEECCSSCCCCCGG---GTT
T ss_pred EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-----------------hhhccCCCCCEEEccCCccccchh---hcC
Confidence 999998632222355689999999998864211 123455666666666655543211 556
Q ss_pred Ccccceeecccccccc-ccccccccccEEEeec
Q 039643 258 FPLLEDLSVSSSQPLE-RVKFSSNLLKRVAFLF 289 (520)
Q Consensus 258 l~~L~~L~L~~~~~l~-~~~~~f~~L~~L~L~~ 289 (520)
+++|+.|.++++..-. +.-..+++|+.|++.+
T Consensus 177 l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209 (291)
T ss_dssp CTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred CCccCEEECCCCcCCCChhhccCCCCCEEECcC
Confidence 6666666666654211 1112344566666655
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.77 E-value=1.1e-08 Score=100.32 Aligned_cols=170 Identities=20% Similarity=0.123 Sum_probs=106.3
Q ss_pred CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC-Ccc-cCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE-PLI-AINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~-p~~-~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.++++|++... ....+|. .+..+++|++|+|+++.+.. |+. +.++++|++|+|+++.+.. .....+.+++.
T Consensus 37 ~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSN-----KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVN 110 (270)
T ss_dssp TTCSEEECCSS-----CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSS
T ss_pred CCCCEEECcCC-----CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccC
Confidence 57889988664 2234554 66788999999999987743 443 5789999999999988732 11134577899
Q ss_pred cceeeeeccCC--cceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHH
Q 039643 175 LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFH 252 (520)
Q Consensus 175 LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 252 (520)
|+.|++.++.. +..-.+.++++|+.|+++++.... + . ...+..+++|++|+++++.++.. ..
T Consensus 111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~--~-----------~~~~~~l~~L~~L~L~~n~l~~~-~~ 174 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--L--P-----------KGVFDKLTSLKELRLYNNQLKRV-PE 174 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--C--C-----------TTTTTTCTTCCEEECCSSCCSCC-CT
T ss_pred CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--c--C-----------HhHccCCcccceeEecCCcCcEe-Ch
Confidence 99999999852 222224558999999999886321 0 0 11234566666666665554331 11
Q ss_pred HHHhCCcccceeecccccccc-cc--ccccccccEEEeec
Q 039643 253 ELISKFPLLEDLSVSSSQPLE-RV--KFSSNLLKRVAFLF 289 (520)
Q Consensus 253 ~ll~~l~~L~~L~L~~~~~l~-~~--~~~f~~L~~L~L~~ 289 (520)
..+.++++|+.|.++++..-. +. -..+++|+.|++.+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 234556666666666654311 11 11234566666654
No 86
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.75 E-value=3.4e-08 Score=104.51 Aligned_cols=196 Identities=16% Similarity=0.067 Sum_probs=118.6
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.++++|++... ....+| .+..+++|++|++++|.+.. |. ..++|++|+|.++.+.+ ++. +.+++.|+
T Consensus 131 ~~L~~L~L~~n-----~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~---~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~ 198 (454)
T 1jl5_A 131 PLLEYLGVSNN-----QLEKLP-ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEE--LPE-LQNLPFLT 198 (454)
T ss_dssp TTCCEEECCSS-----CCSSCC-CCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS--CCC-CTTCTTCC
T ss_pred CCCCEEECcCC-----CCCCCc-ccCCCCCCCEEECCCCcCcccCC---CcccccEEECcCCcCCc--Ccc-ccCCCCCC
Confidence 57899988764 122477 57888999999999987743 32 34689999999888733 222 57789999
Q ss_pred eeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccc--ccc-CCCCCcceEEecccccchhHHHH
Q 039643 177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRV--IVV-ATCPNLKKLHLSEIVLEDQEFHE 253 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~--~~~-~~l~~L~~L~L~~~~~~~~~~~~ 253 (520)
.|++.+|.-.. +.-. .++|+.|+++++....-......++|++|.+... ..+ ..+++|+.|+++++.+++
T Consensus 199 ~L~l~~N~l~~-l~~~-~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~----- 271 (454)
T 1jl5_A 199 AIYADNNSLKK-LPDL-PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD----- 271 (454)
T ss_dssp EEECCSSCCSS-CCCC-CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-----
T ss_pred EEECCCCcCCc-CCCC-cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-----
Confidence 99998875221 1111 3578888888876421011225677888877531 111 234677888887766543
Q ss_pred HHhCCcccceeeccccccccccccccccccEEEeecCCchhHHhcCC-CCccEeEecccCCCC
Q 039643 254 LISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDT-PNLLSFTFESVRIPT 315 (520)
Q Consensus 254 ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~~lL~~~-P~L~~L~l~~~~~~~ 315 (520)
+-...++|+.|+++++.. ...+...++|++|+++++.- .. +... ++|+.|+++++.+..
T Consensus 272 l~~~~~~L~~L~ls~N~l-~~l~~~~~~L~~L~l~~N~l-~~-i~~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 272 LPELPQSLTFLDVSENIF-SGLSELPPNLYYLNASSNEI-RS-LCDLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp CCCCCTTCCEEECCSSCC-SEESCCCTTCCEEECCSSCC-SE-ECCCCTTCCEEECCSSCCSC
T ss_pred cCcccCcCCEEECcCCcc-CcccCcCCcCCEEECcCCcC-Cc-ccCCcCcCCEEECCCCcccc
Confidence 112346777777777652 21111225677777765322 11 1123 367777776665544
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.75 E-value=1.5e-08 Score=97.18 Aligned_cols=190 Identities=13% Similarity=0.027 Sum_probs=108.6
Q ss_pred CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccc-cCC-C-cccCCCCCCCEEEecc-eecChHHHHHHHhcC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCR-LDE-P-LIAINLNSLKNLSLQR-VYANEQMVHNLIAEC 172 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~-l~~-p-~~~~~l~sLk~L~L~~-v~~~~~~l~~Lls~C 172 (520)
.++++|++... ....+|+ .+..+++|++|+|+++. +.. + ..+.++++|++|+|++ +.+.. .....+.++
T Consensus 31 ~~l~~L~l~~n-----~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIET-----HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKEL 104 (239)
T ss_dssp TTCCEEEEESC-----CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECC
T ss_pred CcccEEEEeCC-----cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCC
Confidence 47899999774 2335555 56678999999999985 643 3 3578999999999998 65531 111235679
Q ss_pred CCcceeeeeccCCcceeccccccccc---eEEEecc-cCCCCceeeeCCceeEEEeccccccCCCCCcc-eEEecccccc
Q 039643 173 CSLEDLSLRYTLGLKFFSVSKAHKLK---NMVIVDY-SRSSELESIVAPSLQQLTLVRVIVVATCPNLK-KLHLSEIVLE 247 (520)
Q Consensus 173 P~LE~L~L~~c~~l~~l~I~~~~~Lk---~L~I~~~-~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~-~L~L~~~~~~ 247 (520)
+.|+.|++.++.-..--.+.++++|+ .|+++++ ... .+. ...+.++++|+ +++++++.++
T Consensus 105 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~----~i~-----------~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT----SIP-----------VNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCC----EEC-----------TTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCEEeCCCCCCccccccccccccccccEEECCCCcchh----hcC-----------cccccchhcceeEEEcCCCCCc
Confidence 99999999998521111144467777 9999988 421 110 11244555666 6666555443
Q ss_pred hhHHHHHHhCCcccceeecccccccccc---c-ccc-ccccEEEeecCCchhHHhcCCCCccEeEecc
Q 039643 248 DQEFHELISKFPLLEDLSVSSSQPLERV---K-FSS-NLLKRVAFLFCRSLRAVDLDTPNLLSFTFES 310 (520)
Q Consensus 248 ~~~~~~ll~~l~~L~~L~L~~~~~l~~~---~-~~f-~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~ 310 (520)
. .....+.. ++|+.|.++++..+..+ . ... ++|+.|+++++.-........++|+.|.+.+
T Consensus 170 ~-i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 170 S-VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235 (239)
T ss_dssp E-ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTT
T ss_pred c-cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccC
Confidence 1 11122333 56666666655322111 1 123 4566666655221111112455666666544
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.75 E-value=1.5e-08 Score=100.70 Aligned_cols=161 Identities=19% Similarity=0.082 Sum_probs=108.7
Q ss_pred CceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 99 GVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 99 ~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.++++++... ....+|..+. ++|++|+|+++.+.. +..+.++++|+.|+|+++.+..-.. ...++.|+
T Consensus 11 ~l~~l~~~~~-----~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~ 80 (290)
T 1p9a_G 11 SHLEVNCDKR-----NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLG 80 (290)
T ss_dssp TCCEEECTTS-----CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCC
T ss_pred CccEEECCCC-----CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCC
Confidence 4556655432 2345666654 688899998886643 4567888999999998887732111 15788899
Q ss_pred eeeeeccCCcc-eeccccccccceEEEecccCCC-C-ceeeeCCceeEEEecc-------ccccCCCCCcceEEeccccc
Q 039643 177 DLSLRYTLGLK-FFSVSKAHKLKNMVIVDYSRSS-E-LESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSEIVL 246 (520)
Q Consensus 177 ~L~L~~c~~l~-~l~I~~~~~Lk~L~I~~~~~~~-~-~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~~~~ 246 (520)
.|+++++.--. ...+.++++|+.|+++++.... + ...-..++|++|.+.. ...+..+++|+.|+++++.+
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 99998875211 1123457889999998886421 1 1123467888888862 22356789999999999887
Q ss_pred chhHHHHHHhCCcccceeeccccc
Q 039643 247 EDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 247 ~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
+. .....+.++++|+.|.|+++.
T Consensus 161 ~~-l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 161 TE-LPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp SC-CCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-cCHHHhcCcCCCCEEECCCCc
Confidence 64 233456788999999998876
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.74 E-value=1.6e-08 Score=110.87 Aligned_cols=163 Identities=16% Similarity=0.123 Sum_probs=112.3
Q ss_pred ccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEE
Q 039643 123 YSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVI 202 (520)
Q Consensus 123 ~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I 202 (520)
..+++|+.|.|++|.+...+.+..+++|+.|+|+++.+.+-. . +..++.|+.|+|.+|..-..-.+..+++|+.|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence 345678888888887755456778889999999888873211 1 6788899999988885322224556788889988
Q ss_pred ecccCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc-ccc
Q 039643 203 VDYSRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVK 276 (520)
Q Consensus 203 ~~~~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~ 276 (520)
+++...........|+|+.|.+.. ...+..+++|+.|+|+.+.+++... +..+++|+.|.|++|..-. +.-
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~~l 193 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRAL 193 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGGG
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCChHH
Confidence 888743212233568888888862 2346778889999988887765322 7788889999988876421 112
Q ss_pred cccccccEEEeecCC
Q 039643 277 FSSNLLKRVAFLFCR 291 (520)
Q Consensus 277 ~~f~~L~~L~L~~c~ 291 (520)
..+++|+.|+|.+|.
T Consensus 194 ~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 194 AGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCTTCSEEECCSEE
T ss_pred ccCCCCCEEEccCCc
Confidence 245688888887743
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.74 E-value=7.5e-09 Score=105.91 Aligned_cols=187 Identities=12% Similarity=0.028 Sum_probs=115.3
Q ss_pred ccCcccccCCCccEEEEeccccCC-C-----cccCCCC-CCCEEEecceecC---hHHHHHHHhcC-CCcceeeeeccCC
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLDE-P-----LIAINLN-SLKNLSLQRVYAN---EQMVHNLIAEC-CSLEDLSLRYTLG 185 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~~-p-----~~~~~l~-sLk~L~L~~v~~~---~~~l~~Lls~C-P~LE~L~L~~c~~ 185 (520)
.+|..+...++|++|+|++|.+.. + ..+..++ +|++|+|+++.++ ...+..++..+ +.|++|+|++|.-
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 345554555669999999987743 2 3456788 8999999998873 34566666665 8999999998862
Q ss_pred cc--eec----cccc-cccceEEEecccCCCCceeeeCCceeEEEeccccccCC-CCCcceEEecccccchh---HHHHH
Q 039643 186 LK--FFS----VSKA-HKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVAT-CPNLKKLHLSEIVLEDQ---EFHEL 254 (520)
Q Consensus 186 l~--~l~----I~~~-~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~-l~~L~~L~L~~~~~~~~---~~~~l 254 (520)
-. ... +... ++|+.|+++++........ .+ ...+.. .++|++|+++++.+++. .+...
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l-------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS----EF-------KQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH----HH-------HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH----HH-------HHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 11 111 2223 6888888888763110000 00 001234 35899999998887642 34455
Q ss_pred HhCCc-ccceeeccccccccccc-------ccc-ccccEEEeecCCchh-------HHhcC-CCCccEeEecccCCC
Q 039643 255 ISKFP-LLEDLSVSSSQPLERVK-------FSS-NLLKRVAFLFCRSLR-------AVDLD-TPNLLSFTFESVRIP 314 (520)
Q Consensus 255 l~~l~-~L~~L~L~~~~~l~~~~-------~~f-~~L~~L~L~~c~~l~-------~lL~~-~P~L~~L~l~~~~~~ 314 (520)
+..++ +|+.|.|++|..-.... ..+ .+|++|+|+++.-.. ..+.. .++|+.|+++++.+.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 66666 89999999886421110 112 478888887753211 23333 458888888777544
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.72 E-value=1.9e-08 Score=93.73 Aligned_cols=147 Identities=16% Similarity=0.110 Sum_probs=106.2
Q ss_pred ccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccceE
Q 039643 123 YSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKNM 200 (520)
Q Consensus 123 ~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~L 200 (520)
..+++|++|+++++.+...+....+++|++|++.++.+..-. -++.+|.|+.|++.+|.--. .-.+.++++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 456789999999987754236888999999999998763211 36778999999999885321 2335567888988
Q ss_pred EEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccc-cchhHHHHHHhCCcccceeecccccccc-ccccc
Q 039643 201 VIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIV-LEDQEFHELISKFPLLEDLSVSSSQPLE-RVKFS 278 (520)
Q Consensus 201 ~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~~~ 278 (520)
+++++.... . .+..+..+++|++|+++++. ++.- ..+.++++|+.|.+++|..-. +.-..
T Consensus 118 ~Ls~n~i~~--~-------------~~~~l~~l~~L~~L~L~~n~~i~~~---~~l~~l~~L~~L~l~~n~i~~~~~l~~ 179 (197)
T 4ezg_A 118 DISHSAHDD--S-------------ILTKINTLPKVNSIDLSYNGAITDI---MPLKTLPELKSLNIQFDGVHDYRGIED 179 (197)
T ss_dssp ECCSSBCBG--G-------------GHHHHTTCSSCCEEECCSCTBCCCC---GGGGGCSSCCEEECTTBCCCCCTTGGG
T ss_pred EecCCccCc--H-------------hHHHHhhCCCCCEEEccCCCCcccc---HhhcCCCCCCEEECCCCCCcChHHhcc
Confidence 888876310 0 12246788999999999886 6542 257899999999999987422 11224
Q ss_pred cccccEEEeecC
Q 039643 279 SNLLKRVAFLFC 290 (520)
Q Consensus 279 f~~L~~L~L~~c 290 (520)
+++|++|++.+.
T Consensus 180 l~~L~~L~l~~N 191 (197)
T 4ezg_A 180 FPKLNQLYAFSQ 191 (197)
T ss_dssp CSSCCEEEECBC
T ss_pred CCCCCEEEeeCc
Confidence 678999999873
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.71 E-value=1.2e-08 Score=100.01 Aligned_cols=184 Identities=17% Similarity=0.097 Sum_probs=125.7
Q ss_pred CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.++++|++... ....+|. .+..+++|++|+|++|.+.. +..+.++++|++|+|+++.+..- ....+.+++.
T Consensus 28 ~~l~~L~ls~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTC-----CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTT
T ss_pred CCccEEECCCC-----cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCcc
Confidence 57899988653 2334444 67778999999999987643 34678899999999999987321 1123578899
Q ss_pred cceeeeeccCC--cceeccccccccceEEEecccCCC---CceeeeCCceeEEEecc-------ccccCCCCCcc----e
Q 039643 175 LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSS---ELESIVAPSLQQLTLVR-------VIVVATCPNLK----K 238 (520)
Q Consensus 175 LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~---~~~~i~aP~L~~L~l~~-------~~~~~~l~~L~----~ 238 (520)
|+.|++.++.. +....+.++++|+.|+++++.... +...-..++|++|.+.. ...+..+++|+ +
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 99999998853 333346668999999999987532 22233568999999862 22344555666 7
Q ss_pred EEecccccchhHHHHHHhCCcccceeecccccccc-ccc--cccccccEEEeec
Q 039643 239 LHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVK--FSSNLLKRVAFLF 289 (520)
Q Consensus 239 L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~--~~f~~L~~L~L~~ 289 (520)
++++++.++.. ....+ ...+|+.|+++++..-. +.. ..+++|++|++++
T Consensus 182 L~ls~n~l~~~-~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 182 LDLSLNPMNFI-QPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EECCSSCCCEE-CTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred eecCCCccccc-Ccccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 88888776541 11222 34489999999887421 111 2357899999986
No 93
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.68 E-value=1.6e-07 Score=103.20 Aligned_cols=216 Identities=19% Similarity=0.130 Sum_probs=119.5
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.+++.|++... ....+|. .+++|++|+|++|.+.. |. .+++|++|+|+++.+.. + -...+.|+
T Consensus 61 ~~L~~L~L~~N-----~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~--l---~~~l~~L~ 124 (622)
T 3g06_A 61 AHITTLVIPDN-----NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--L---PALPSGLC 124 (622)
T ss_dssp TTCSEEEECSC-----CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC--C---CCCCTTCC
T ss_pred CCCcEEEecCC-----CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC--C---CCCCCCcC
Confidence 46777777654 1224555 35677777777776643 33 66777777777776522 0 01356666
Q ss_pred eeeeeccCCcceeccccccccceEEEecccCCC------------------CceeeeCCceeEEEeccc--ccc-CCCCC
Q 039643 177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSS------------------ELESIVAPSLQQLTLVRV--IVV-ATCPN 235 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~------------------~~~~i~aP~L~~L~l~~~--~~~-~~l~~ 235 (520)
.|++.+|. +..+... .++|+.|++++|.... ..+....++|+.|.+... ..+ ..+++
T Consensus 125 ~L~L~~N~-l~~lp~~-l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~ 202 (622)
T 3g06_A 125 KLWIFGNQ-LTSLPVL-PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSE 202 (622)
T ss_dssp EEECCSSC-CSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred EEECCCCC-CCcCCCC-CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccch
Confidence 66666653 2212111 3556666665554210 001112355666665421 111 23456
Q ss_pred cceEEecccccchhHHHHHHhCCcccceeeccccccccccccccccccEEEeecCCchhHHhcCCCCccEeEecccCCCC
Q 039643 236 LKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 236 L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~ 315 (520)
|+.|+++++.++. +-..+++|+.|.++++. +..++..+++|++|+++++ .+..+-...++|+.|+++++.+..
T Consensus 203 L~~L~L~~N~l~~-----l~~~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~~ 275 (622)
T 3g06_A 203 LYKLWAYNNRLTS-----LPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTR 275 (622)
T ss_dssp CCEEECCSSCCSS-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCCS
T ss_pred hhEEECcCCcccc-----cCCCCCCCCEEEccCCc-cCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCCc
Confidence 6666666655542 11235778888888775 3333345678999999875 333222367889999999987765
Q ss_pred cccccccC-CCcE-EEEeccccccCh
Q 039643 316 ISISASHQ-CPWN-VFFVHEHDVGDI 339 (520)
Q Consensus 316 ~~~~~l~~-~~L~-v~~~~~~~~g~~ 339 (520)
+ ...+.. ..++ +.+.++.+.+.+
T Consensus 276 l-p~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 276 L-PESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp C-CGGGGGSCTTCEEECCSCCCCHHH
T ss_pred C-CHHHhhccccCEEEecCCCCCCcC
Confidence 4 122222 2243 556677777543
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.66 E-value=2.1e-08 Score=96.99 Aligned_cols=156 Identities=17% Similarity=0.094 Sum_probs=96.4
Q ss_pred ccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceec
Q 039643 115 AYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFS 190 (520)
Q Consensus 115 ~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~ 190 (520)
...+|..+. ++|+.|+|+++.+.. +..+.++++|++|+|+++.+.+ .....+.+++.|+.|+|.++... ..-.
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 102 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGV 102 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChhH
Confidence 345666654 588999999987643 3457788999999999887732 11223567889999999887521 1112
Q ss_pred cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 191 VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 191 I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
+.++++|+.|+++++.... + . ...+..+++|++|+++++.++. .....++++++|+.|+|+++.
T Consensus 103 ~~~l~~L~~L~L~~N~l~~--~--~-----------~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKS--L--P-----------SGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TTTCTTCCEEECCSSCCCC--C--C-----------TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCCEEEcCCCcCCC--c--C-----------hhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCc
Confidence 3457888888888876310 0 0 1124556777777777666543 122345667777777777765
Q ss_pred ccc--c-cccccccccEEEeec
Q 039643 271 PLE--R-VKFSSNLLKRVAFLF 289 (520)
Q Consensus 271 ~l~--~-~~~~f~~L~~L~L~~ 289 (520)
.-. + .-..+++|++|++.+
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCS
T ss_pred CCccCHHHHhCCCCCCEEEeeC
Confidence 321 1 111345677777765
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.66 E-value=2.3e-08 Score=102.23 Aligned_cols=212 Identities=16% Similarity=0.142 Sum_probs=123.4
Q ss_pred CCceEEEEEecCCCCCcccccC-----cccccCC-CccEEEEeccccCC--CcccCC-----CCCCCEEEecceecC---
Q 039643 98 NGVKELHIVVESSPHESAYTLP-----QAIYSAK-LLTTLVLNGCRLDE--PLIAIN-----LNSLKNLSLQRVYAN--- 161 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP-----~~l~~~~-sL~~L~L~~c~l~~--p~~~~~-----l~sLk~L~L~~v~~~--- 161 (520)
+++++|++.... ....+ ..+..++ +|++|+|++|.+.. +..+.. +++|++|+|+++.++
T Consensus 22 ~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 22 HGVTSLDLSLNN-----LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp TTCCEEECTTSC-----GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCceEEEccCCC-----CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 569999997641 22233 4555677 89999999997743 223333 399999999999883
Q ss_pred hHHHHHHHhcC-CCcceeeeeccCCcc--eec----ccc-ccccceEEEecccCCCCce-e-----eeC-CceeEEEecc
Q 039643 162 EQMVHNLIAEC-CSLEDLSLRYTLGLK--FFS----VSK-AHKLKNMVIVDYSRSSELE-S-----IVA-PSLQQLTLVR 226 (520)
Q Consensus 162 ~~~l~~Lls~C-P~LE~L~L~~c~~l~--~l~----I~~-~~~Lk~L~I~~~~~~~~~~-~-----i~a-P~L~~L~l~~ 226 (520)
...+...+..+ +.|+.|+|++|.--. .-. +.. .++|++|+++++....... . ... ++|++|.+..
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 34566667777 899999999996211 101 111 2599999999987421110 1 122 3777777652
Q ss_pred c-------c----ccCCC-CCcceEEecccccchh---HHHHHHhC-Ccccceeeccccccccc-------ccccccccc
Q 039643 227 V-------I----VVATC-PNLKKLHLSEIVLEDQ---EFHELISK-FPLLEDLSVSSSQPLER-------VKFSSNLLK 283 (520)
Q Consensus 227 ~-------~----~~~~l-~~L~~L~L~~~~~~~~---~~~~ll~~-l~~L~~L~L~~~~~l~~-------~~~~f~~L~ 283 (520)
. . .+..+ ++|++|+++++.+++. .+...+.. .++|+.|+|+++..-.. ......+|+
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~ 256 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCS
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCcc
Confidence 1 0 12233 4777777777666542 12233333 35777777777653110 011235677
Q ss_pred EEEeecCC---c----hh---HHhcCCCCccEeEecccCCC
Q 039643 284 RVAFLFCR---S----LR---AVDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 284 ~L~L~~c~---~----l~---~lL~~~P~L~~L~l~~~~~~ 314 (520)
.|++++|. . .. ..+...++|+.|+++++.+.
T Consensus 257 ~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp EEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred EEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 77776643 1 11 22334555666666655443
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.65 E-value=1.2e-08 Score=101.95 Aligned_cols=209 Identities=17% Similarity=0.115 Sum_probs=134.4
Q ss_pred cHHHHHHHHHhCCceEEEEEecCCCCCcccccCccc--ccCCCccEEEEeccccCC--C----cccCCCCCCCEEEecce
Q 039643 87 LVDKWIGLAVGNGVKELHIVVESSPHESAYTLPQAI--YSAKLLTTLVLNGCRLDE--P----LIAINLNSLKNLSLQRV 158 (520)
Q Consensus 87 ~v~~Wl~~a~~~~VkeL~L~~~~~~~~~~~~LP~~l--~~~~sL~~L~L~~c~l~~--p----~~~~~l~sLk~L~L~~v 158 (520)
.+..........++++|++.... .....|..+ ..+++|++|+|++|.+.. + .....+++|++|+|+++
T Consensus 80 ~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 80 LLVGALRVLAYSRLKELTLEDLK----ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA 155 (310)
T ss_dssp HHHHHHHHHHHSCCCEEEEESCC----CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred HHHHHHHhcccCceeEEEeeCCE----eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence 34455555555779999997741 233456666 678999999999987643 2 23357999999999999
Q ss_pred ecChHHHHHHHhcCCCcceeeeeccCCcc------eeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCC
Q 039643 159 YANEQMVHNLIAECCSLEDLSLRYTLGLK------FFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVAT 232 (520)
Q Consensus 159 ~~~~~~l~~Lls~CP~LE~L~L~~c~~l~------~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~ 232 (520)
.+.. .....+++++.|+.|+|+++.... ...+.++++|++|++++|.... .. .. ....+..
T Consensus 156 ~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~----~~------~~~l~~~ 222 (310)
T 4glp_A 156 HSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PT----GV------CAALAAA 222 (310)
T ss_dssp SSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HH----HH------HHHHHHH
T ss_pred Ccch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hH----HH------HHHHHhc
Confidence 8732 122345688999999999996322 1223457899999999886310 00 00 0001346
Q ss_pred CCCcceEEecccccchhHHHHHHhCC---cccceeeccccccccccc-cccccccEEEeecCCchh-HHhcCCCCccEeE
Q 039643 233 CPNLKKLHLSEIVLEDQEFHELISKF---PLLEDLSVSSSQPLERVK-FSSNLLKRVAFLFCRSLR-AVDLDTPNLLSFT 307 (520)
Q Consensus 233 l~~L~~L~L~~~~~~~~~~~~ll~~l---~~L~~L~L~~~~~l~~~~-~~f~~L~~L~L~~c~~l~-~lL~~~P~L~~L~ 307 (520)
+++|++|+++++.+++..+ ..+..+ ++|+.|.++++..- .++ ..+++|++|+|+++.-.. ..+..+|+|+.|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVN-PSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp TCCCSSEECTTSCCCCCCC-SCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred CCCCCEEECCCCCCCccch-hhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 6788888888777654211 112333 68888888877642 221 123688888888753322 3357789999999
Q ss_pred ecccCCC
Q 039643 308 FESVRIP 314 (520)
Q Consensus 308 l~~~~~~ 314 (520)
++++.+.
T Consensus 301 L~~N~l~ 307 (310)
T 4glp_A 301 LDGNPFL 307 (310)
T ss_dssp CSSTTTS
T ss_pred CcCCCCC
Confidence 9988653
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.62 E-value=5.1e-08 Score=95.36 Aligned_cols=145 Identities=11% Similarity=0.055 Sum_probs=87.1
Q ss_pred ccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceE
Q 039643 121 AIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNM 200 (520)
Q Consensus 121 ~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L 200 (520)
.+..+++|++|++++|.+...+.+..+++|+.|+|+++.+.+-. . +.+++.|+.|+++++.--..-.+.. ++|+.|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEE
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEE
Confidence 34557788888888887644346678888888888888773211 1 6778888888888875211112222 778888
Q ss_pred EEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccc-ccccc
Q 039643 201 VIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLER-VKFSS 279 (520)
Q Consensus 201 ~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~-~~~~f 279 (520)
+++++.... + ..+..+++|+.|+++++.+++- ..++.+++|+.|.++++..-.. .-..+
T Consensus 112 ~L~~N~l~~--~---------------~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~~~l~~l 171 (263)
T 1xeu_A 112 FLDNNELRD--T---------------DSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNTGGLTRL 171 (263)
T ss_dssp ECCSSCCSB--S---------------GGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBCTTSTTC
T ss_pred EccCCccCC--C---------------hhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcchHHhccC
Confidence 888775311 0 1245566666666666555442 1355666666666666553111 11134
Q ss_pred ccccEEEeec
Q 039643 280 NLLKRVAFLF 289 (520)
Q Consensus 280 ~~L~~L~L~~ 289 (520)
++|+.|++.+
T Consensus 172 ~~L~~L~l~~ 181 (263)
T 1xeu_A 172 KKVNWIDLTG 181 (263)
T ss_dssp CCCCEEEEEE
T ss_pred CCCCEEeCCC
Confidence 5566666655
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.61 E-value=2.4e-07 Score=97.89 Aligned_cols=176 Identities=16% Similarity=0.056 Sum_probs=92.7
Q ss_pred CCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecc
Q 039643 126 KLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDY 205 (520)
Q Consensus 126 ~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~ 205 (520)
++|++|+|++|.+...+.+.++++|++|+++++.+.+ ++ ...+.|+.|++.+|.....-.+.++++|+.|+++++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 4566666666654321245666666666666665521 11 112466666666653211113445667777777666
Q ss_pred cCCCCceeeeCCceeEEEecc-----ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccccccccc
Q 039643 206 SRSSELESIVAPSLQQLTLVR-----VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSN 280 (520)
Q Consensus 206 ~~~~~~~~i~aP~L~~L~l~~-----~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~ 280 (520)
... .+.-..++|++|.+.. ...+..+++|++|+++++.+++ +-...++|+.|.++++.. ...+....
T Consensus 206 ~l~--~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~N~l-~~l~~~~~ 277 (454)
T 1jl5_A 206 SLK--KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNVRDNYL-TDLPELPQ 277 (454)
T ss_dssp CCS--SCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-----CCSCCTTCCEEECCSSCC-SCCCCCCT
T ss_pred cCC--cCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc-----ccccccccCEEECCCCcc-cccCcccC
Confidence 531 1111224677776642 1135566777777777665543 112346777777776652 22222345
Q ss_pred cccEEEeecCCchhHHhcCCCCccEeEecccCCCC
Q 039643 281 LLKRVAFLFCRSLRAVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 281 ~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~~~~~~ 315 (520)
+|++|+++++. +..+-...++|+.|+++++.+..
T Consensus 278 ~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~ 311 (454)
T 1jl5_A 278 SLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRS 311 (454)
T ss_dssp TCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSE
T ss_pred cCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCc
Confidence 67777777643 22111123577888877776544
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.57 E-value=9.2e-08 Score=92.48 Aligned_cols=169 Identities=15% Similarity=0.051 Sum_probs=110.4
Q ss_pred CCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccccceEEE
Q 039643 126 KLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVI 202 (520)
Q Consensus 126 ~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I 202 (520)
.+.+++++++..+.. |... .++|+.|+|.++.+..- ....+.+++.|+.|+|+++.. ...-.+.++++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 567888888877643 4433 37899999999887321 112356789999999998852 21222445788888888
Q ss_pred ecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--cc-cccc
Q 039643 203 VDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RV-KFSS 279 (520)
Q Consensus 203 ~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~-~~~f 279 (520)
+++... . + ....+..+++|++|+++++.++. .....+.++++|+.|.|+++..-. +. -..+
T Consensus 91 ~~n~l~--~--~-----------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 154 (251)
T 3m19_A 91 ANNQLA--S--L-----------PLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154 (251)
T ss_dssp TTSCCC--C--C-----------CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCccc--c--c-----------ChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcC
Confidence 887631 0 0 01235678899999998887753 233456788999999998876421 11 1134
Q ss_pred ccccEEEeecCCchh---HHhcCCCCccEeEecccCC
Q 039643 280 NLLKRVAFLFCRSLR---AVDLDTPNLLSFTFESVRI 313 (520)
Q Consensus 280 ~~L~~L~L~~c~~l~---~lL~~~P~L~~L~l~~~~~ 313 (520)
++|++|+|+++.-.. ..+..+++|+.|++.++.+
T Consensus 155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 678888887643211 3456677888888777754
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.50 E-value=1.5e-07 Score=95.66 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=23.6
Q ss_pred HHhCCcccceeecccccccccc-ccccccccEEEeecCCchh--HHhcCCCCccEeEe
Q 039643 254 LISKFPLLEDLSVSSSQPLERV-KFSSNLLKRVAFLFCRSLR--AVDLDTPNLLSFTF 308 (520)
Q Consensus 254 ll~~l~~L~~L~L~~~~~l~~~-~~~f~~L~~L~L~~c~~l~--~lL~~~P~L~~L~l 308 (520)
.++++++|+.|+++++.. ..+ ...|.+|++|.+.++.++. ..+.++++|+.+++
T Consensus 197 ~f~~l~~L~~LdLs~N~l-~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp TTTTEECCSEEECTTSCC-CCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred HhccCcccchhhcCCCCc-CccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 345555555555555542 111 1124455555554443332 11233444444444
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.43 E-value=5.4e-07 Score=97.91 Aligned_cols=151 Identities=12% Similarity=0.061 Sum_probs=79.7
Q ss_pred cCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--c-cccccccccEEEeecCCchh----HHhcCCCC
Q 039643 230 VATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--R-VKFSSNLLKRVAFLFCRSLR----AVDLDTPN 302 (520)
Q Consensus 230 ~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~-~~~~f~~L~~L~L~~c~~l~----~lL~~~P~ 302 (520)
+..+++|+.+++..+..........+.++++++.+.++.+.... + ......+|+.|.+.++.... ..+..+++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~ 495 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence 45566677666654332221122345566777777776655311 1 11234567777777654322 34566778
Q ss_pred ccEeEecccCCCCcccccccC-CCcE-EEEeccccccChhhHHHHHHHHHhccccccceEEEeccccccccccccccccc
Q 039643 303 LLSFTFESVRIPTISISASHQ-CPWN-VFFVHEHDVGDIDNWYLKLKEFLGASNQIENLLINLRSVNIRQMPFDLEEFKN 380 (520)
Q Consensus 303 L~~L~l~~~~~~~~~~~~l~~-~~L~-v~~~~~~~~g~~~~l~~~~~~~l~n~~~Le~L~i~~~~~~~~~i~~~L~~~p~ 380 (520)
|+.|+++++.+..+....+.. ..|+ +.+.++.+.+-+ ...+++++.|+.|.+.. +...+..+..+..+|
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-------~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~- 566 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-------TFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFP- 566 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-------CGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCC-
T ss_pred cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-------hhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhh-
Confidence 888888877665431111111 1243 445555555432 23456778888888874 333444444333111
Q ss_pred cCCCCcccccceEEE
Q 039643 381 RSPSLPFQVGNMRLI 395 (520)
Q Consensus 381 asp~l~~~l~~L~l~ 395 (520)
+ +|++|.+.
T Consensus 567 -----~-~L~~L~L~ 575 (635)
T 4g8a_A 567 -----S-SLAFLNLT 575 (635)
T ss_dssp -----T-TCCEEECT
T ss_pred -----C-cCCEEEee
Confidence 3 67777766
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.42 E-value=1.4e-07 Score=92.28 Aligned_cols=166 Identities=11% Similarity=0.027 Sum_probs=116.3
Q ss_pred CCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEec
Q 039643 125 AKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVD 204 (520)
Q Consensus 125 ~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~ 204 (520)
++.++.+.++++.+...+....+++|++|+++++.+.. ++ -+..++.|+.|++.+|.--....+.++++|+.|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence 34566666776665432356788999999999998732 11 3678899999999988522111256689999999998
Q ss_pred ccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc-cccccccccc
Q 039643 205 YSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE-RVKFSSNLLK 283 (520)
Q Consensus 205 ~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~-~~~~~f~~L~ 283 (520)
+.... .| .+.. ++|+.|+++++.+++. ..+.++++|+.|.++++..-. +.-..+++|+
T Consensus 95 N~l~~------l~-----------~~~~-~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~ 153 (263)
T 1xeu_A 95 NRLKN------LN-----------GIPS-ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLE 153 (263)
T ss_dssp SCCSC------CT-----------TCCC-SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCC
T ss_pred CccCC------cC-----------cccc-CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCChHHccCCCCC
Confidence 86311 01 1222 7889999998887652 247899999999999987421 2122467899
Q ss_pred EEEeecCCchh-HHhcCCCCccEeEecccCCC
Q 039643 284 RVAFLFCRSLR-AVDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 284 ~L~L~~c~~l~-~lL~~~P~L~~L~l~~~~~~ 314 (520)
+|+++++.-.. ..+..+++|+.|+++++.+.
T Consensus 154 ~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 154 VLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp EEECTTSCCCBCTTSTTCCCCCEEEEEEEEEE
T ss_pred EEECCCCcCcchHHhccCCCCCEEeCCCCccc
Confidence 99998854322 55678999999999988654
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.41 E-value=2.6e-07 Score=83.39 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=90.4
Q ss_pred CCccEEEEeccccC---CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccceE
Q 039643 126 KLLTTLVLNGCRLD---EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKNM 200 (520)
Q Consensus 126 ~sL~~L~L~~c~l~---~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~L 200 (520)
++|++|+|++|.+. .|..+..+++|+.|+|.++.+.+- ..+..++.|+.|++++|.... ...+.++++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 68999999998775 366668889999999998887432 346678888888888886322 1112237788888
Q ss_pred EEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh--HHHHHHhCCcccceeecccccc
Q 039643 201 VIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ--EFHELISKFPLLEDLSVSSSQP 271 (520)
Q Consensus 201 ~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~l~~L~~L~L~~~~~ 271 (520)
+++++.... + | ....+..+++|+.|+++++.++.. .....+..+++|+.|++..+..
T Consensus 101 ~Ls~N~l~~--~----~--------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKD--I----S--------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCS--S----G--------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCc--c----h--------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 888876311 0 0 012457788999999988877642 1235788899999999988763
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.40 E-value=4e-07 Score=85.15 Aligned_cols=87 Identities=22% Similarity=0.177 Sum_probs=48.0
Q ss_pred ccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceeccc
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSVS 192 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I~ 192 (520)
.+|..+ .++|++|+|+++.+.. ++ .+..+++|++|+|.++.+.. .....+.+++.|+.|+|.++.-. ..-.+.
T Consensus 21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 97 (208)
T 2o6s_A 21 SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97 (208)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhHhc
Confidence 344443 2467777777765533 22 34567777777777766531 11123456677777777766421 111133
Q ss_pred cccccceEEEeccc
Q 039643 193 KAHKLKNMVIVDYS 206 (520)
Q Consensus 193 ~~~~Lk~L~I~~~~ 206 (520)
++++|+.|+++++.
T Consensus 98 ~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 98 KLTQLKELALNTNQ 111 (208)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CccCCCEEEcCCCc
Confidence 46677777776665
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.35 E-value=1e-06 Score=95.80 Aligned_cols=176 Identities=16% Similarity=0.069 Sum_probs=91.7
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED 177 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~ 177 (520)
.+++.|++... ....+|..++ ++|++|+|++|.+...+ ..+++|++|+|+++.++. ++. +. ..|+.
T Consensus 59 ~~L~~L~Ls~n-----~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~ 124 (571)
T 3cvr_A 59 NQFSELQLNRL-----NLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKH 124 (571)
T ss_dssp TTCSEEECCSS-----CCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCE
T ss_pred CCccEEEeCCC-----CCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCE
Confidence 47777777653 1223666554 67888888887664312 457788888888777632 222 22 27777
Q ss_pred eeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhC
Q 039643 178 LSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISK 257 (520)
Q Consensus 178 L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~ 257 (520)
|+|+++.. ..+.- .+++|+.|+++++... .+ | ..+++|++|++++|.++. +.. +.
T Consensus 125 L~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~l~--~l----p-------------~~l~~L~~L~Ls~N~L~~--lp~-l~- 179 (571)
T 3cvr_A 125 LDVDNNQL-TMLPE-LPALLEYINADNNQLT--ML----P-------------ELPTSLEVLSVRNNQLTF--LPE-LP- 179 (571)
T ss_dssp EECCSSCC-SCCCC-CCTTCCEEECCSSCCS--CC----C-------------CCCTTCCEEECCSSCCSC--CCC-CC-
T ss_pred EECCCCcC-CCCCC-cCccccEEeCCCCccC--cC----C-------------CcCCCcCEEECCCCCCCC--cch-hh-
Confidence 77777642 11111 3567777777766531 00 0 034566666666655543 111 22
Q ss_pred Ccccceeeccccccccccccccccc-------cEEEeecCCch--hHHhcCCCCccEeEecccCCC
Q 039643 258 FPLLEDLSVSSSQPLERVKFSSNLL-------KRVAFLFCRSL--RAVDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 258 l~~L~~L~L~~~~~l~~~~~~f~~L-------~~L~L~~c~~l--~~lL~~~P~L~~L~l~~~~~~ 314 (520)
++|+.|.|+++.. ..++....+| +.|+|+++.-. ..-+..+|+|+.|+++++.+.
T Consensus 180 -~~L~~L~Ls~N~L-~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 180 -ESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp -TTCCEEECCSSCC-SSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred -CCCCEEECcCCCC-CchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 5666666666542 1111111144 55555543211 122233566666666655443
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.34 E-value=8.3e-07 Score=80.03 Aligned_cols=133 Identities=18% Similarity=0.045 Sum_probs=94.7
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED 177 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~ 177 (520)
.++++|++.... .....+|..+..+++|++|+|++|.+.....+..+++|++|+|+++.+... ++..+..+|.|+.
T Consensus 24 ~~L~~L~l~~n~---l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCK---SNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCB---CBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCE
T ss_pred ccCCEEECCCCC---CChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCE
Confidence 579999997641 111368888888999999999999775446788999999999999998432 5566778999999
Q ss_pred eeeeccCC--cce-eccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEeccccc
Q 039643 178 LSLRYTLG--LKF-FSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVL 246 (520)
Q Consensus 178 L~L~~c~~--l~~-l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~ 246 (520)
|++.+|.- +.. -.+.++++|+.|+++++..... |.. ....+..+++|+.|++..+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~------~~~------~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL------NDY------RESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS------TTH------HHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch------HHH------HHHHHHhCccCcEecCCCCCh
Confidence 99999952 211 2345688999999998863110 000 001356677788887776544
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.33 E-value=1.4e-06 Score=94.59 Aligned_cols=194 Identities=13% Similarity=0.036 Sum_probs=101.2
Q ss_pred CCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccCCcc-eeccccccccceEEEecccCC--C-CceeeeCCce
Q 039643 145 INLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTLGLK-FFSVSKAHKLKNMVIVDYSRS--S-ELESIVAPSL 219 (520)
Q Consensus 145 ~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~~~~~Lk~L~I~~~~~~--~-~~~~i~aP~L 219 (520)
..+++|+.|++..+.+ ...........++.|+.|++..+.... ...+.++++|+.+++..+... . .......+++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 3455666666655543 111112223345566666655543211 111223566666666554321 0 0112234566
Q ss_pred eEEEecc-------ccccCCCCCcceEEecccccchhHHHHHHhCCcccceeecccccccc--ccc-cccccccEEEeec
Q 039643 220 QQLTLVR-------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLE--RVK-FSSNLLKRVAFLF 289 (520)
Q Consensus 220 ~~L~l~~-------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~--~~~-~~f~~L~~L~L~~ 289 (520)
+.+.+.. +..+..+++|+.++++++..........++.+++|+.|+|++|..-. +.. ..+++|+.|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 6666541 22345677888888876654332233456778888888888876421 111 1346788888877
Q ss_pred CCchh---HHhcCCCCccEeEecccCCCCcccccccC--CCcE-EEEeccccccC
Q 039643 290 CRSLR---AVDLDTPNLLSFTFESVRIPTISISASHQ--CPWN-VFFVHEHDVGD 338 (520)
Q Consensus 290 c~~l~---~lL~~~P~L~~L~l~~~~~~~~~~~~l~~--~~L~-v~~~~~~~~g~ 338 (520)
+.-.. ..+..+++|+.|+++++.+..+....+.. .+++ +.+..+.+..+
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 43211 45677888888888888766431111211 1243 44555555543
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.32 E-value=4.6e-07 Score=86.51 Aligned_cols=136 Identities=16% Similarity=0.131 Sum_probs=83.4
Q ss_pred ccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceec
Q 039643 115 AYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFS 190 (520)
Q Consensus 115 ~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~ 190 (520)
...+|..+. ++|++|+|+++.+.. |..+.++++|+.|+|+++.+.. .....+.+++.|+.|+|+++.- +..-.
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCcCCccChhH
Confidence 445666553 788899999887643 4557788889999998887621 1112346678888888887742 11112
Q ss_pred cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 191 VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 191 I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
+.++++|+.|+++++... .+ +..+..+++|+.|+++++.++. .....+.++++|+.|.+.+++
T Consensus 108 ~~~l~~L~~L~Ls~N~l~----~l------------p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLT----EL------------PRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTCTTCCEEECCSSCCC----SC------------CTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSC
T ss_pred hCcchhhCeEeccCCccc----cc------------CcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCC
Confidence 334677777777776531 00 1234566677777777666543 122345666677777766654
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.30 E-value=5.8e-07 Score=85.30 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=77.2
Q ss_pred ccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceec
Q 039643 115 AYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFS 190 (520)
Q Consensus 115 ~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~ 190 (520)
...+|..+. ++|+.|+|+++.+.. +..+.++++|+.|+|+++.+.. .....+.+++.|+.|+|+++.- +..-.
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-ECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-cCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 345565543 578888888876643 3356778888888888876632 1112245667777777777642 11111
Q ss_pred cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 191 VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 191 I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
+.++++|+.|+++++.... + .+..+..+++|+.|+++++.++.. ....+..+++|+.|.|++++
T Consensus 100 f~~l~~L~~L~L~~N~l~~----~-----------~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINC----L-----------RVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSCCCC----C-----------CTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCCCCE----e-----------CHHHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCC
Confidence 2346677777777665210 0 012345566666666666555431 12234556666666665554
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.29 E-value=2.7e-07 Score=81.57 Aligned_cols=125 Identities=17% Similarity=0.092 Sum_probs=81.0
Q ss_pred CCccEEEEeccccC---CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccceE
Q 039643 126 KLLTTLVLNGCRLD---EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKNM 200 (520)
Q Consensus 126 ~sL~~L~L~~c~l~---~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~L 200 (520)
++|++|++++|.+. .|..+..+++|+.|+|+++.+.+- ..++.++.|+.|++++|.-.. .-.+.++++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 67899999998775 366678889999999998887432 345677888888888775221 1112236777777
Q ss_pred EEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh--HHHHHHhCCcccceeecc
Q 039643 201 VIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ--EFHELISKFPLLEDLSVS 267 (520)
Q Consensus 201 ~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~l~~L~~L~L~ 267 (520)
+++++.... . . .+..+..+++|++|+++++.+++. .....+..+++|+.|+++
T Consensus 94 ~ls~N~i~~--~--~----------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKD--L--S----------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCS--H--H----------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCC--h--H----------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777765310 0 0 012356677788888877766542 122466777777777764
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.25 E-value=7e-07 Score=83.49 Aligned_cols=144 Identities=20% Similarity=0.191 Sum_probs=98.0
Q ss_pred CCceEEEEEecCCCCCcccccCcc-cccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQA-IYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~-l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.++++|++... ....+|.. +..+++|++|+|+++.+.. ++ .+..+++|++|+|+++.+.. .....+.+++.
T Consensus 28 ~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETN-----SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCCcEEEcCCC-----ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccC
Confidence 47888988764 12345554 4578999999999987744 33 35789999999999998732 11223578899
Q ss_pred cceeeeeccCCc--ceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHH
Q 039643 175 LEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFH 252 (520)
Q Consensus 175 LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 252 (520)
|+.|++.++.-. ..-.+.++++|+.|+++++.... +. ...+..+++|+.++++++.+.
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~----~~-----------~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS----VP-----------DGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CC-----------TTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce----eC-----------HHHhccCCCccEEEecCCCee-----
Confidence 999999988521 11124457899999999886311 00 112456777888888776554
Q ss_pred HHHhCCcccceeeccccc
Q 039643 253 ELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 253 ~ll~~l~~L~~L~L~~~~ 270 (520)
..+++|+.|.++.+.
T Consensus 162 ---~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINK 176 (208)
T ss_dssp ---CCTTTTHHHHHHHHH
T ss_pred ---cCCCCHHHHHHHHHh
Confidence 346677777776654
No 112
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=1.3e-06 Score=80.03 Aligned_cols=94 Identities=10% Similarity=0.058 Sum_probs=71.8
Q ss_pred cccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEeccee-cChHHHHHHHhc---CCCcceeeeeccCCcc
Q 039643 114 SAYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVY-ANEQMVHNLIAE---CCSLEDLSLRYTLGLK 187 (520)
Q Consensus 114 ~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~-~~~~~l~~Lls~---CP~LE~L~L~~c~~l~ 187 (520)
....||......-.|++|+|++|.+.. .....++++|++|+|++|. +++..+..+-.. |+.||+|+|++|..++
T Consensus 49 ~~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 49 DYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CGGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ccccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 345677654445689999999997633 3446789999999999996 599999988763 7899999999997654
Q ss_pred e---eccccccccceEEEecccC
Q 039643 188 F---FSVSKAHKLKNMVIVDYSR 207 (520)
Q Consensus 188 ~---l~I~~~~~Lk~L~I~~~~~ 207 (520)
. ..+..+++|++|++++|..
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTT
T ss_pred HHHHHHHhcCCCCCEEECCCCCC
Confidence 3 1234588999999998864
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.22 E-value=9.3e-07 Score=78.01 Aligned_cols=106 Identities=21% Similarity=0.132 Sum_probs=81.8
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcce
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLED 177 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~ 177 (520)
.++++|++.... .....+|..+..+++|++|+|++|.+.....+..+++|++|+|+++.+.+. ++..+.+++.|+.
T Consensus 17 ~~l~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSR---SNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCB---CBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCE
T ss_pred ccCeEEEccCCc---CChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCE
Confidence 568888886641 111367888888999999999999775446788999999999999998432 5667778999999
Q ss_pred eeeeccCCcc--e-eccccccccceEEEecccC
Q 039643 178 LSLRYTLGLK--F-FSVSKAHKLKNMVIVDYSR 207 (520)
Q Consensus 178 L~L~~c~~l~--~-l~I~~~~~Lk~L~I~~~~~ 207 (520)
|++++|.-.. . -.+.++++|+.|+++++..
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 9999986322 1 3355689999999999863
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.17 E-value=1.4e-06 Score=79.26 Aligned_cols=132 Identities=12% Similarity=0.025 Sum_probs=80.3
Q ss_pred cccCCCccEEEEeccccCCCcccCC-CCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee--c-ccccccc
Q 039643 122 IYSAKLLTTLVLNGCRLDEPLIAIN-LNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF--S-VSKAHKL 197 (520)
Q Consensus 122 l~~~~sL~~L~L~~c~l~~p~~~~~-l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--~-I~~~~~L 197 (520)
+..+.+|++|+|++|.+...+.... .++|+.|+|+++.+.+- .-+.+++.|+.|+++++.- ..+ . +.++++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCcchhhcCCCC
Confidence 4456788888888876643223333 34888888888776431 2356677777887777752 211 1 2346777
Q ss_pred ceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh--HHHHHHhCCcccceeecccccc
Q 039643 198 KNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ--EFHELISKFPLLEDLSVSSSQP 271 (520)
Q Consensus 198 k~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~ll~~l~~L~~L~L~~~~~ 271 (520)
+.|+++++.... .|. ...+..+++|+.++++++.++.. .-...+..+++|+.|+++.+..
T Consensus 91 ~~L~L~~N~i~~------~~~--------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLVE------LGD--------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCCC------GGG--------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCCc------chh--------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 777777775310 010 01356677888888877766431 1223577788888888877653
No 115
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=3.4e-06 Score=86.43 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=39.4
Q ss_pred HHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecccCCCCce-e---eeCCceeEEEe
Q 039643 164 MVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELE-S---IVAPSLQQLTL 224 (520)
Q Consensus 164 ~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~-~---i~aP~L~~L~l 224 (520)
.+..++..+|.|+.|.|.++.++....+. +++|++|++..|....... . ...|+|++|.+
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 46678899999999999887544322344 7899999998776321111 1 13566666665
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.15 E-value=1.3e-07 Score=88.13 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=90.2
Q ss_pred cccCcccccCCCccEEEEeccccCCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceecccccc
Q 039643 116 YTLPQAIYSAKLLTTLVLNGCRLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAH 195 (520)
Q Consensus 116 ~~LP~~l~~~~sL~~L~L~~c~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~ 195 (520)
..+|..+..+++|++|+|++|.+...+.+..+++|+.|+|+++.+. .++..+..+|.|+.|++.+|.-...-.+.+++
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~ 115 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKLV 115 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccCC
Confidence 3456688888999999999987744237778899999999988874 23345556688899988888521111344577
Q ss_pred ccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh---------HHHHHHhCCcccceee
Q 039643 196 KLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ---------EFHELISKFPLLEDLS 265 (520)
Q Consensus 196 ~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~---------~~~~ll~~l~~L~~L~ 265 (520)
+|+.|+++++.... + | ....+..+++|++++++++.+++. .....+..+++|+.|+
T Consensus 116 ~L~~L~l~~N~i~~--~----~--------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 116 NLRVLYMSNNKITN--W----G--------EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEEECCC--H----H--------HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCEEECCCCcCCc--h----h--------HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 88888888776310 0 0 001356788888888887766432 2234577888888876
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.14 E-value=9.4e-07 Score=90.24 Aligned_cols=87 Identities=18% Similarity=0.128 Sum_probs=47.1
Q ss_pred ccCcccccCCCccEEEEeccccCC-C-cccC-CCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eecc
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLDE-P-LIAI-NLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSV 191 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~~-p-~~~~-~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I 191 (520)
.+|..+. +.++.|+|+++.+.. + ..+. ++++|++|+|+++.+..- ....+.+++.|+.|+|+++.--. .-.+
T Consensus 32 ~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 108 (361)
T 2xot_A 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108 (361)
T ss_dssp SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcCCcCCHHHh
Confidence 4555443 346677777765532 2 2233 677777777776665210 01124556777777777664211 1123
Q ss_pred ccccccceEEEeccc
Q 039643 192 SKAHKLKNMVIVDYS 206 (520)
Q Consensus 192 ~~~~~Lk~L~I~~~~ 206 (520)
.++++|+.|+++++.
T Consensus 109 ~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 109 SDLQALEVLLLYNNH 123 (361)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred CCCcCCCEEECCCCc
Confidence 346677777777665
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.14 E-value=1.5e-06 Score=82.31 Aligned_cols=136 Identities=11% Similarity=0.124 Sum_probs=75.3
Q ss_pred cccCcccccCCCccEEEEeccccCC--C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceec
Q 039643 116 YTLPQAIYSAKLLTTLVLNGCRLDE--P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFS 190 (520)
Q Consensus 116 ~~LP~~l~~~~sL~~L~L~~c~l~~--p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~ 190 (520)
..+|..+. ..+++|+|+++.+.. + ..+..+++|++|+|+++.+.. .....+.+++.|+.|+|+++.. +..-.
T Consensus 24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCEEECCCCccCccCHhH
Confidence 34666543 356788888876633 2 235678888888888776632 0111245667777777777642 11112
Q ss_pred cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 191 VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 191 I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
+.++++|++|+++++.... + .+..+..+++|+.|+++++.++.. ....+..+++|+.|.+++++
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~----~-----------~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITC----V-----------GNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GTTCSSCCEEECTTSCCCC----B-----------CTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred hcCCcCCCEEECCCCcCCe----E-----------CHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcC
Confidence 3446777777777665310 0 012345566666666666555431 12334556666666665544
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.02 E-value=1.3e-05 Score=81.40 Aligned_cols=182 Identities=10% Similarity=0.096 Sum_probs=99.1
Q ss_pred ccccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee---
Q 039643 115 AYTLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF--- 189 (520)
Q Consensus 115 ~~~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--- 189 (520)
...+|..+. +++++|+|+++.+.. |+ .+.++++|++|+|+++.+.+..-...+.+++.|.++.+.++..+..+
T Consensus 21 Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 346777663 589999999987744 44 47889999999999887521111123456788777666665555443
Q ss_pred ccccccccceEEEecccCCC--CceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCC-cccceeec
Q 039643 190 SVSKAHKLKNMVIVDYSRSS--ELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKF-PLLEDLSV 266 (520)
Q Consensus 190 ~I~~~~~Lk~L~I~~~~~~~--~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l-~~L~~L~L 266 (520)
.+.++++|+.|+++++.... +.......++..+.+.. .+.++. .....+.++ ..++.|.+
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~----------------~~~i~~-l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD----------------NINIHT-IERNSFVGLSFESVILWL 161 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES----------------CTTCCE-ECTTSSTTSBSSCEEEEC
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhcc----------------cccccc-ccccchhhcchhhhhhcc
Confidence 24457899999998886321 11112223333333321 111111 000112222 24555555
Q ss_pred cccccc--cccccccccccEEEeecCCchh----HHhcCCCCccEeEecccCCCC
Q 039643 267 SSSQPL--ERVKFSSNLLKRVAFLFCRSLR----AVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 267 ~~~~~l--~~~~~~f~~L~~L~L~~c~~l~----~lL~~~P~L~~L~l~~~~~~~ 315 (520)
+++..- .+......+|++|.+.+++.+. ..+..+++|+.|+++++.+..
T Consensus 162 ~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp CSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 554421 1111122356666665544433 345667788888887776544
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.01 E-value=6.5e-06 Score=77.96 Aligned_cols=130 Identities=20% Similarity=0.212 Sum_probs=93.0
Q ss_pred CCceEEEEEecCCCCCcccccCc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.++++|++... ....+|+ .+..+++|++|+|+++.+.. |..+.++++|++|+|+++.+.. .....+.+++.
T Consensus 32 ~~l~~L~l~~n-----~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQN-----TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSS-----CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred cCCCEEECCCC-----cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCC
Confidence 57888988664 2334554 56678999999999997743 5678999999999999998741 11223567899
Q ss_pred cceeeeeccCC--cceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643 175 LEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED 248 (520)
Q Consensus 175 LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~ 248 (520)
|+.|+|.++.- +..-.+.++++|+.|+++++.... +. ...+..+++|+.+++++|.+..
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~-----------~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT----IA-----------KGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CC-----------TTTTTTCTTCCEEECCSSCEEC
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE----EC-----------HHHHhCCCCCCEEEeCCCCcCC
Confidence 99999999852 222235568899999999886311 00 1235678899999998876643
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.00 E-value=2.2e-06 Score=95.84 Aligned_cols=114 Identities=18% Similarity=0.102 Sum_probs=74.2
Q ss_pred cCcccccCCCccEEEEecccc-CCCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc-eecccccc
Q 039643 118 LPQAIYSAKLLTTLVLNGCRL-DEPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK-FFSVSKAH 195 (520)
Q Consensus 118 LP~~l~~~~sL~~L~L~~c~l-~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~-~l~I~~~~ 195 (520)
.|..+..++.|+.|+|++|.+ ..|.....+++|++|+|+++.+. .++.-+.+++.|+.|+|++|..-. .-.+.+++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 355666778888888888765 34666667888888888887764 233335677888888888775211 22345577
Q ss_pred ccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchh
Q 039643 196 KLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQ 249 (520)
Q Consensus 196 ~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~ 249 (520)
+|+.|+++++... . -+..+.++++|+.|+|++|.+++.
T Consensus 294 ~L~~L~L~~N~l~----~------------lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 294 QLKYFYFFDNMVT----T------------LPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TCSEEECCSSCCC----C------------CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCEEECCCCCCC----c------------cChhhhcCCCccEEeCCCCccCCC
Confidence 7888888777531 0 123478899999999999888764
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.98 E-value=4.7e-06 Score=85.02 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=35.3
Q ss_pred cCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--eeccccccccce
Q 039643 124 SAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FFSVSKAHKLKN 199 (520)
Q Consensus 124 ~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l~I~~~~~Lk~ 199 (520)
.+++|++|+|+++.+.. +..+.++++|+.|+|+++.+.. .....+.+++.|+.|+|.++.... .-.+.++++|+.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence 44555555555554422 2234455555555555554421 001123344555555555543111 112233455555
Q ss_pred EEEeccc
Q 039643 200 MVIVDYS 206 (520)
Q Consensus 200 L~I~~~~ 206 (520)
|+++++.
T Consensus 141 L~L~~N~ 147 (361)
T 2xot_A 141 LYLSQNQ 147 (361)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 5555443
No 123
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=3.5e-05 Score=78.80 Aligned_cols=159 Identities=21% Similarity=0.228 Sum_probs=87.2
Q ss_pred CCceEEEEEecCCCC-C----cccccCcccccCCCccEEEEecc-ccCCCcccCCCCCCCEEEecceecChHHHHHHHh-
Q 039643 98 NGVKELHIVVESSPH-E----SAYTLPQAIYSAKLLTTLVLNGC-RLDEPLIAINLNSLKNLSLQRVYANEQMVHNLIA- 170 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~-~----~~~~LP~~l~~~~sL~~L~L~~c-~l~~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls- 170 (520)
.++++|.+....... . ....++..+-.+++|+.|.|+++ .+..++ ...++|++|.|..+.+....+..+..
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHc
Confidence 688888774321000 0 01134555566788888888876 344433 24788888888877776666666643
Q ss_pred cCCCcceeeeeccC---C----cce----eccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceE
Q 039643 171 ECCSLEDLSLRYTL---G----LKF----FSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKL 239 (520)
Q Consensus 171 ~CP~LE~L~L~~c~---~----l~~----l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L 239 (520)
.+|+|+.|+|..+. + +.. +....+|+|+.|.+.+|........ . ......+++|++|
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~----~--------la~a~~~~~L~~L 284 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE----M--------FLESDILPQLETM 284 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH----H--------HHHCSSGGGCSEE
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH----H--------HHhCccCCCCCEE
Confidence 68888888875321 1 110 1111256666666665542100000 0 0001246677777
Q ss_pred EecccccchhHHHHHH---hCCcccceeeccccc
Q 039643 240 HLSEIVLEDQEFHELI---SKFPLLEDLSVSSSQ 270 (520)
Q Consensus 240 ~L~~~~~~~~~~~~ll---~~l~~L~~L~L~~~~ 270 (520)
+|+.+.+++.....+. ..+++|+.|+|+.|.
T Consensus 285 dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred ECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 7776666654433333 345667777766554
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.93 E-value=1.4e-05 Score=75.68 Aligned_cols=130 Identities=13% Similarity=0.071 Sum_probs=91.9
Q ss_pred CCceEEEEEecCCCCCccccc-Cc-ccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCC
Q 039643 98 NGVKELHIVVESSPHESAYTL-PQ-AIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECC 173 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~L-P~-~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP 173 (520)
..+++|++... ....+ |. .+..+++|++|+|+++.+.. +..+.++++|++|+|+++.+.. .....+.+++
T Consensus 32 ~~~~~L~L~~N-----~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNNN-----EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLE 105 (220)
T ss_dssp TTCSEEECCSS-----CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCGGGGTTCS
T ss_pred CCCCEEEcCCC-----cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc-cCHhHhcCCc
Confidence 45678887664 22333 33 35678999999999997743 3468899999999999998732 1123467899
Q ss_pred CcceeeeeccCC--cceeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643 174 SLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED 248 (520)
Q Consensus 174 ~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~ 248 (520)
.|+.|+|+++.- +..-.+.++++|+.|+++++.... + .+..+..+++|+.++++++.+.+
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~-----------~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT----V-----------APGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC----B-----------CTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE----E-----------CHHHhcCCCCCCEEEecCcCCcC
Confidence 999999999863 222335568899999999886311 0 12346778999999999877654
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.87 E-value=1.1e-05 Score=87.50 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=82.4
Q ss_pred cCcccccCCCccEEE-EeccccC-CC--------cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc
Q 039643 118 LPQAIYSAKLLTTLV-LNGCRLD-EP--------LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK 187 (520)
Q Consensus 118 LP~~l~~~~sL~~L~-L~~c~l~-~p--------~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~ 187 (520)
+|..+..+++|+.|+ ++.+.+. .+ -.......|+.|+|+++.+.. ++. +..++.|+.|+|+++.--.
T Consensus 401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~ 477 (567)
T 1dce_A 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRA 477 (567)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCC
T ss_pred CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccc
Confidence 455566667777777 3332110 00 000112358888888887742 333 6778888888888875211
Q ss_pred -eeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeec
Q 039643 188 -FFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSV 266 (520)
Q Consensus 188 -~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L 266 (520)
+-.+.++++|+.|+++++.... + + .+..+++|+.|++++|.+++......++++++|+.|.|
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~~----l------------p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALEN----V------------D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCC----C------------G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cchhhhcCCCCCEEECCCCCCCC----C------------c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 1245567888888888876310 0 1 35677888888888777654211345677888888888
Q ss_pred ccccc
Q 039643 267 SSSQP 271 (520)
Q Consensus 267 ~~~~~ 271 (520)
+++..
T Consensus 541 ~~N~l 545 (567)
T 1dce_A 541 QGNSL 545 (567)
T ss_dssp TTSGG
T ss_pred cCCcC
Confidence 87764
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.86 E-value=3.1e-05 Score=73.60 Aligned_cols=131 Identities=15% Similarity=0.054 Sum_probs=92.3
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL 175 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L 175 (520)
.+++.|++.... .....|..+..+++|++|+|+++.+.. | ..+.++++|+.|+|+++.+.. .....+..++.|
T Consensus 40 ~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQ----ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCCEEEcCCCc----cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhh
Confidence 678999987641 122235667788999999999997744 4 346899999999999998732 112235678999
Q ss_pred ceeeeeccCCcc-eeccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643 176 EDLSLRYTLGLK-FFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED 248 (520)
Q Consensus 176 E~L~L~~c~~l~-~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~ 248 (520)
+.|+|.++.-.. .-.+.++++|+.|+++++... .+. ...+..+++|+.+++.++.+.+
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~----~~~-----------~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLK----SIP-----------HGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC----CCC-----------TTTTTTCTTCCEEECTTSCBCT
T ss_pred CeEeccCCcccccCcccccCCCCCEEECCCCcCC----ccC-----------HHHHhCCCCCCEEEeeCCCccC
Confidence 999999986321 123455899999999988631 010 1235678899999998877653
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.80 E-value=3.1e-05 Score=84.04 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=93.3
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
.+++.|++... ....+| ..+++|++|+|++|.+.. |. +.+ +|+.|+|+++.+.. ++. .++.|+
T Consensus 80 ~~L~~L~Ls~N-----~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~ 143 (571)
T 3cvr_A 80 PQITVLEITQN-----ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLE 143 (571)
T ss_dssp TTCSEEECCSS-----CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCC
T ss_pred CCCCEEECcCC-----CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC--CCC---cCcccc
Confidence 56888988764 123567 236889999999987743 44 333 89999999988743 222 578899
Q ss_pred eeeeeccCCcceeccccccccceEEEecccCCC-CceeeeCCceeEEEeccc-----cccCCCCCc-------ceEEecc
Q 039643 177 DLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSS-ELESIVAPSLQQLTLVRV-----IVVATCPNL-------KKLHLSE 243 (520)
Q Consensus 177 ~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~-~~~~i~aP~L~~L~l~~~-----~~~~~l~~L-------~~L~L~~ 243 (520)
.|+|+++.. ..+.- .+++|+.|+++++.... +. +. ++|++|.+... ..+.. +| +.|++++
T Consensus 144 ~L~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 144 YINADNNQL-TMLPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp EEECCSSCC-SCCCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCCCC----------CCEEEECCS
T ss_pred EEeCCCCcc-CcCCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCC
Confidence 999988852 21221 36789999998887421 22 22 77777777521 01211 55 7777777
Q ss_pred cccchhHHHHHHhCCcccceeecccccc
Q 039643 244 IVLEDQEFHELISKFPLLEDLSVSSSQP 271 (520)
Q Consensus 244 ~~~~~~~~~~ll~~l~~L~~L~L~~~~~ 271 (520)
|.++. +..-+..+++|+.|.|+++..
T Consensus 217 N~l~~--lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 217 NRITH--IPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SCCCC--CCGGGGGSCTTEEEECCSSSC
T ss_pred Cccee--cCHHHhcCCCCCEEEeeCCcC
Confidence 66653 222233477777777777654
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.79 E-value=9.8e-06 Score=73.66 Aligned_cols=138 Identities=15% Similarity=0.117 Sum_probs=70.1
Q ss_pred cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceeccccccccceEEEecccCCCCceeeeCCceeE
Q 039643 142 LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAHKLKNMVIVDYSRSSELESIVAPSLQQ 221 (520)
Q Consensus 142 ~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~ 221 (520)
+.+..+++|+.|+|+++.+.. ++.+...+|.|+.|+++++.--..-.+.++++|+.|+++++... .+.
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~----~~~------ 80 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC----RIG------ 80 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC----EEC------
T ss_pred HhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccc----ccC------
Confidence 345667788888888777632 12233334577777777664211112334566666666665421 000
Q ss_pred EEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccccccccccccccccEEEeecCCch-hHHhcCC
Q 039643 222 LTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFLFCRSL-RAVDLDT 300 (520)
Q Consensus 222 L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~~c~~l-~~lL~~~ 300 (520)
+..+..+++|+.|+++++.++.-.....+.++++|+.|.++++.... . ... ...+..+
T Consensus 81 -----~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~---------------~~~~~~~~~~l 139 (176)
T 1a9n_A 81 -----EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-K---------------KHYRLYVIYKV 139 (176)
T ss_dssp -----SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-S---------------TTHHHHHHHHC
T ss_pred -----cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-c---------------HhHHHHHHHHC
Confidence 01124566666666666655431111234556666666666554210 0 000 0245667
Q ss_pred CCccEeEecccC
Q 039643 301 PNLLSFTFESVR 312 (520)
Q Consensus 301 P~L~~L~l~~~~ 312 (520)
|+|+.|++..+.
T Consensus 140 ~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 140 PQVRVLDFQKVK 151 (176)
T ss_dssp TTCSEETTEECC
T ss_pred CccceeCCCcCC
Confidence 777777776653
No 129
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.77 E-value=1.3e-05 Score=82.36 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=37.8
Q ss_pred CCCcceEEecccccchhH---HHHHHhCCcccceeecccccccc----ccc---cccccccEEEeecCCch-------hH
Q 039643 233 CPNLKKLHLSEIVLEDQE---FHELISKFPLLEDLSVSSSQPLE----RVK---FSSNLLKRVAFLFCRSL-------RA 295 (520)
Q Consensus 233 l~~L~~L~L~~~~~~~~~---~~~ll~~l~~L~~L~L~~~~~l~----~~~---~~f~~L~~L~L~~c~~l-------~~ 295 (520)
.++|++|+|++|.+++.. +...+..+++|+.|+|++|..-. ... ....+|+.|+|++|.-. ..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 344555555554443321 22333445555555555544210 000 11234555555554221 13
Q ss_pred HhcCCCCccEeEecccCCC
Q 039643 296 VDLDTPNLLSFTFESVRIP 314 (520)
Q Consensus 296 lL~~~P~L~~L~l~~~~~~ 314 (520)
.+...|+|+.|+++++.+.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHCSSCCEEECTTSSCC
T ss_pred HHHhCCCCCEEeccCCCCC
Confidence 3445677777777777654
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.72 E-value=2.6e-05 Score=72.02 Aligned_cols=116 Identities=20% Similarity=0.149 Sum_probs=72.6
Q ss_pred ccccCcccccCCCccEEEEeccccCC-Cc--ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcc--ee
Q 039643 115 AYTLPQAIYSAKLLTTLVLNGCRLDE-PL--IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLK--FF 189 (520)
Q Consensus 115 ~~~LP~~l~~~~sL~~L~L~~c~l~~-p~--~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~--~l 189 (520)
...+|..++. +|++|.|+++.+.. ++ .+..+++|++|+|+++.+.. .....+.+++.|+.|+|+++.-.. .-
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC-cCHhHcCCcccCCEEECCCCcCCccCHH
Confidence 3456766543 88889898887643 33 26788888888888887632 112234567888888888775211 11
Q ss_pred ccccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643 190 SVSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED 248 (520)
Q Consensus 190 ~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~ 248 (520)
.+.++++|+.|+++++... .+ .+..+..+++|++++++++.+++
T Consensus 97 ~~~~l~~L~~L~L~~N~l~----~~-----------~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQIS----CV-----------MPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SSTTCTTCCEEECCSSCCC----EE-----------CTTSSTTCTTCCEEECTTCCBCC
T ss_pred HhcCCCCCCEEECCCCcCC----ee-----------CHHHhhcCCCCCEEEeCCCCccC
Confidence 2445677777777776531 00 02235667788888887766653
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.71 E-value=1.6e-05 Score=73.40 Aligned_cols=124 Identities=17% Similarity=0.112 Sum_probs=80.3
Q ss_pred cEEEEeccccCC-CcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCC--cceeccccccccceEEEecc
Q 039643 129 TTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLG--LKFFSVSKAHKLKNMVIVDY 205 (520)
Q Consensus 129 ~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~--l~~l~I~~~~~Lk~L~I~~~ 205 (520)
++|+++++.+.. |... .++|+.|+|+++.+..-.....+..++.|+.|+|+++.- +..-.+.++++|+.|+++++
T Consensus 11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 678888877643 4432 349999999998773211112356778888888888752 22223445778888888877
Q ss_pred cCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 206 SRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 206 ~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
... .+. +..+.++++|++|+++++.+++. ....+..+++|+.|.+++++
T Consensus 89 ~l~----~~~-----------~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIK----EIS-----------NKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCC----EEC-----------SSSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCC
T ss_pred cCC----ccC-----------HHHhcCCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCCCC
Confidence 631 110 12356788888888888776542 22446677888888887765
No 132
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.69 E-value=5e-06 Score=85.47 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=17.2
Q ss_pred CCCCEEEecceecChHHHHHHHhcCCCcceeeeecc
Q 039643 148 NSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYT 183 (520)
Q Consensus 148 ~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c 183 (520)
++|++|+|+++.+++..+..+...++.|+.|+|++|
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 345555555554444444444444444555555544
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.66 E-value=3.3e-05 Score=71.51 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=32.1
Q ss_pred ccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeecc
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYT 183 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c 183 (520)
.+|..+. ++|++|.|+++.+. .|..+.++++|+.|+|+++.+.. .....+.+++.|+.|+|+++
T Consensus 24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECCCC
Confidence 4554433 45666666666553 24455566666666666655421 00111334455555555554
No 134
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=3.1e-05 Score=70.77 Aligned_cols=61 Identities=8% Similarity=0.053 Sum_probs=43.4
Q ss_pred CCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCcceec---ccc----ccccceEEEeccc
Q 039643 145 INLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFFS---VSK----AHKLKNMVIVDYS 206 (520)
Q Consensus 145 ~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~---I~~----~~~Lk~L~I~~~~ 206 (520)
..-..|+.|+|+++.+++..+..+ ++|+.|+.|+|.+|..++.-. |.. +++|+.|++++|.
T Consensus 58 ~~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 58 LDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp TTCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred CCCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 334579999999999888788776 789999999999997654321 221 2456677776665
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.59 E-value=0.00018 Score=74.58 Aligned_cols=191 Identities=13% Similarity=0.133 Sum_probs=108.6
Q ss_pred ccCcccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecceec---ChHHHHHHHhcCCCcceeeeecc-CCcceecc
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRVYA---NEQMVHNLIAECCSLEDLSLRYT-LGLKFFSV 191 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v~~---~~~~l~~Lls~CP~LE~L~L~~c-~~l~~l~I 191 (520)
.++...|...+|+.+.|....-.+ ...+.++++|+.+.|..+.+ ....|. |..|+.+.|... ..+..-..
T Consensus 148 ~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~l~~I~~~aF 222 (401)
T 4fdw_A 148 SIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVTLKEIGSQAF 222 (401)
T ss_dssp EECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTTCCEECTTTT
T ss_pred EECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCchheehhhHh
Confidence 344433433457777766521111 23466777788887765433 333332 577777777533 11111223
Q ss_pred ccccccceEEEecccCCCCceeeeCCceeEEEecc------ccccCCCCCcceEEecccccch----hHHHHHHhCCccc
Q 039643 192 SKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLED----QEFHELISKFPLL 261 (520)
Q Consensus 192 ~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~----~~~~~ll~~l~~L 261 (520)
.++++|+.+.+...-...+...+...+|+.+.++. ...|.+|++|+.+.+..+.... ......|.+|++|
T Consensus 223 ~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L 302 (401)
T 4fdw_A 223 LKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL 302 (401)
T ss_dssp TTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred hCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence 45778888887654211111222335788888752 3457889999999987643320 0122467889999
Q ss_pred ceeeccccccccccc----cccccccEEEeecC-Cchh-HHhcCCCCccEeEecccCCCC
Q 039643 262 EDLSVSSSQPLERVK----FSSNLLKRVAFLFC-RSLR-AVDLDTPNLLSFTFESVRIPT 315 (520)
Q Consensus 262 ~~L~L~~~~~l~~~~----~~f~~L~~L~L~~c-~~l~-~lL~~~P~L~~L~l~~~~~~~ 315 (520)
+.+.|... +..++ ..+.+|+.+.|... ..+. ..+.++ +|+++.+.++..+.
T Consensus 303 ~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 303 ARFEIPES--IRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CEECCCTT--CCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred CeEEeCCc--eEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 99998753 22222 12357888888532 1111 455677 89999998876554
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.56 E-value=6.8e-05 Score=69.39 Aligned_cols=80 Identities=23% Similarity=0.114 Sum_probs=56.6
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCCCc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSL 175 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~L 175 (520)
.++++|++... ....+|..+..+++|++|+|+++.+.. +..+.++++|++|+|+++.+..-. ...+.+++.|
T Consensus 31 ~~l~~L~L~~n-----~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGN-----QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSS-----CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTC
T ss_pred CCCCEEECCCC-----cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCC
Confidence 57899988764 234678888889999999999997744 345889999999999998873200 1123445555
Q ss_pred ceeeeecc
Q 039643 176 EDLSLRYT 183 (520)
Q Consensus 176 E~L~L~~c 183 (520)
+.|+|.++
T Consensus 105 ~~L~L~~N 112 (193)
T 2wfh_A 105 RLLSLHGN 112 (193)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 55555554
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.55 E-value=6.5e-05 Score=81.52 Aligned_cols=101 Identities=21% Similarity=0.142 Sum_probs=69.5
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
..++.|++... ....+|. +..+++|+.|+|++|.+. .|..+.++++|++|+|+++.+.. ++ -+++++.|+
T Consensus 441 ~~L~~L~Ls~n-----~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHK-----DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQ 511 (567)
T ss_dssp TTCSEEECTTS-----CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCC
T ss_pred cCceEEEecCC-----CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCc
Confidence 35677776543 2234665 777888888888887663 47777888888888888887743 33 467788888
Q ss_pred eeeeeccCC--cc-eeccccccccceEEEecccC
Q 039643 177 DLSLRYTLG--LK-FFSVSKAHKLKNMVIVDYSR 207 (520)
Q Consensus 177 ~L~L~~c~~--l~-~l~I~~~~~Lk~L~I~~~~~ 207 (520)
.|+|+++.- +. .-.+.++++|+.|+++++..
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 888888742 21 23455678888888887763
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.53 E-value=0.00014 Score=65.82 Aligned_cols=115 Identities=18% Similarity=0.142 Sum_probs=68.2
Q ss_pred cccCcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCc--ceecc
Q 039643 116 YTLPQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGL--KFFSV 191 (520)
Q Consensus 116 ~~LP~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l--~~l~I 191 (520)
..+|..+. ++|++|+|+++.+.. ++ .+..+++|++|+|.++.+.. .....+.+++.|+.|++.++.-- ..-.+
T Consensus 20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQSLPNGVF 96 (177)
T ss_dssp SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEECCCCCccccCHHHh
Confidence 34555443 578888888876643 33 35678888888888877631 11123456778888888776421 11113
Q ss_pred ccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643 192 SKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED 248 (520)
Q Consensus 192 ~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~ 248 (520)
.++++|+.|+++++... . +. ...+..+++|++++++++.+++
T Consensus 97 ~~l~~L~~L~l~~N~l~--~--~~-----------~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 97 DKLTQLKELALDTNQLK--S--VP-----------DGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSSCCS--C--CC-----------TTTTTTCTTCCEEECCSSCBCC
T ss_pred hCCcccCEEECcCCcce--E--eC-----------HHHhcCCcccCEEEecCCCeec
Confidence 34677777777766531 0 00 1124567777778877766654
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=8.7e-05 Score=74.38 Aligned_cols=154 Identities=13% Similarity=0.090 Sum_probs=90.0
Q ss_pred CCCccEEEEeccccC-C-CcccCCCCCCCEEEecceec---ChHHHHHHHhcCCCcceeeeec-----------------
Q 039643 125 AKLLTTLVLNGCRLD-E-PLIAINLNSLKNLSLQRVYA---NEQMVHNLIAECCSLEDLSLRY----------------- 182 (520)
Q Consensus 125 ~~sL~~L~L~~c~l~-~-p~~~~~l~sLk~L~L~~v~~---~~~~l~~Lls~CP~LE~L~L~~----------------- 182 (520)
|++|+.|.|.. .+. + ...+.++++|+.|.|..+.+ .+..| .+|..+..+.+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF----~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEAL----ADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSS----CTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhh----cCCCceEEecCcchhhhhcccccccccccc
Confidence 79999999988 442 2 34578899999999977642 22222 3455555444322
Q ss_pred cCCcc--------------------------eeccc-------------cccccceEEEecccCC-CC-ceeeeCCceeE
Q 039643 183 TLGLK--------------------------FFSVS-------------KAHKLKNMVIVDYSRS-SE-LESIVAPSLQQ 221 (520)
Q Consensus 183 c~~l~--------------------------~l~I~-------------~~~~Lk~L~I~~~~~~-~~-~~~i~aP~L~~ 221 (520)
|..++ .+.+. .+++|+.+++.++... .+ ..--.+++|+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 11111 00000 1678999998876421 11 11224678888
Q ss_pred EEec------cccccCCCCCcc-eEEecccccchhHHHHHHhCCcccceeeccccccccccc-cc---cccccEEE
Q 039643 222 LTLV------RVIVVATCPNLK-KLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQPLERVK-FS---SNLLKRVA 286 (520)
Q Consensus 222 L~l~------~~~~~~~l~~L~-~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~-~~---f~~L~~L~ 286 (520)
+.++ +...|.+|++|+ .+.+.. .++. .....|.+|++|+.|.+..+.. ..++ .. ..+|+.++
T Consensus 255 l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~i-~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGDKI-TTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSSCC-CEECTTTTCTTCCCCEEE
T ss_pred EECCcccceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCCcc-CccchhhhcCCcchhhhc
Confidence 8875 244578899999 999975 2221 1124578999999999866542 2221 12 34666664
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=0.0004 Score=69.53 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=8.0
Q ss_pred CCCccEEEEecccc
Q 039643 125 AKLLTTLVLNGCRL 138 (520)
Q Consensus 125 ~~sL~~L~L~~c~l 138 (520)
+++|++|+|+++.+
T Consensus 48 l~~L~~LdLs~n~i 61 (329)
T 3sb4_A 48 FPSLKVLDISNAEI 61 (329)
T ss_dssp CTTCCEEEEEEEEE
T ss_pred hccCeEEecCccee
Confidence 45566666666544
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.24 E-value=7.7e-05 Score=83.35 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=81.8
Q ss_pred CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccC-CCcccCCCCCCCEEEecceecChHHHHHHHhcCCCcc
Q 039643 98 NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLD-EPLIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLE 176 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~-~p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE 176 (520)
..++.|+|... ....+|..++.+++|++|+|++|.+. .|..+.++++|++|+|+++.+. .++.-+.+++.|+
T Consensus 224 ~~L~~L~Ls~n-----~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 224 QLWHALDLSNL-----QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLK 296 (727)
T ss_dssp CCCCEEECTTS-----CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCS
T ss_pred CCCcEEECCCC-----CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCC
Confidence 56778877553 23478999999999999999999774 4778899999999999999885 3344467899999
Q ss_pred eeeeeccCCcc-eeccccccccceEEEecccC
Q 039643 177 DLSLRYTLGLK-FFSVSKAHKLKNMVIVDYSR 207 (520)
Q Consensus 177 ~L~L~~c~~l~-~l~I~~~~~Lk~L~I~~~~~ 207 (520)
.|+|.+|..-. ...+.++++|+.|+++++..
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 99999985211 22366689999999999875
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.23 E-value=0.00028 Score=63.80 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=74.0
Q ss_pred CCceEEEEEecCCCCCcccccCcc-cccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTLPQA-IYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~LP~~-l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.++++|++... ....+|.. +..+++|++|+|+++.+.. ++ .+..+++|+.|+|+++.+.. .....+..++.
T Consensus 28 ~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~ 101 (177)
T 2o6r_A 28 SSATRLELESN-----KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQ 101 (177)
T ss_dssp TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCCcEEEeCCC-----cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCcc
Confidence 57899998764 22345554 4568999999999997744 33 36899999999999998742 11223567899
Q ss_pred cceeeeeccCCc--ceeccccccccceEEEecccC
Q 039643 175 LEDLSLRYTLGL--KFFSVSKAHKLKNMVIVDYSR 207 (520)
Q Consensus 175 LE~L~L~~c~~l--~~l~I~~~~~Lk~L~I~~~~~ 207 (520)
|+.|++.++.-. ..-.+.++++|+.|+++++..
T Consensus 102 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 999999998521 111134478899999888763
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.23 E-value=8.9e-05 Score=68.58 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=66.4
Q ss_pred ccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccCCccee--ccccccccceEEEecccCCCCceeeeCCcee
Q 039643 143 IAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTLGLKFF--SVSKAHKLKNMVIVDYSRSSELESIVAPSLQ 220 (520)
Q Consensus 143 ~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l--~I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~ 220 (520)
.+..+++|++|+|+++.+.+ ++ .+.+++.|+.|++.+|.- ..+ .+..+++|+.|+++++.... +
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l~~----l------ 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIAS----L------ 108 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEECCC----H------
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcCCc----C------
Confidence 56778888888888877732 22 345667788888877741 111 12224677777777765210 0
Q ss_pred EEEeccccccCCCCCcceEEecccccchhHHHHHHhCCcccceeeccccc
Q 039643 221 QLTLVRVIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 221 ~L~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~L~L~~~~ 270 (520)
..+..+++|+.|+++++.++.-.....+..+++|+.|.++++.
T Consensus 109 -------~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 109 -------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -------HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred -------CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 1245677788888877777642222456777888888877765
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.17 E-value=0.00027 Score=63.78 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=22.5
Q ss_pred ccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceec
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYA 160 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~ 160 (520)
.+|..+. ++|++|+|+++.+.. |..+.++++|++|+|+++.+
T Consensus 23 ~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 66 (170)
T 3g39_A 23 SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66 (170)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc
Confidence 3454442 556666666665522 33355566666666665554
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.12 E-value=0.00034 Score=63.46 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=22.4
Q ss_pred ccCcccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceec
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYA 160 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~ 160 (520)
.+|..+. ++|++|+|+++.+.. |..+.++++|++|+|+++.+
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 69 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC
Confidence 4454443 556666666655422 33445566666666665554
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.75 E-value=0.0012 Score=60.37 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=22.8
Q ss_pred CCCCCcceEEe--cccccchhH---HHHHHhCCcccceeeccccc
Q 039643 231 ATCPNLKKLHL--SEIVLEDQE---FHELISKFPLLEDLSVSSSQ 270 (520)
Q Consensus 231 ~~l~~L~~L~L--~~~~~~~~~---~~~ll~~l~~L~~L~L~~~~ 270 (520)
...++|++|+| +.+.+++.. +...+...++|+.|+|+++.
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 34455666666 555555432 33455556667777766654
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.71 E-value=0.00053 Score=62.87 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=45.7
Q ss_pred CCCCCCCEEEecceecChHH---HHHHHhcCCCcceeeeeccCCc----cee--ccccccccceEEE--ecccCCCCcee
Q 039643 145 INLNSLKNLSLQRVYANEQM---VHNLIAECCSLEDLSLRYTLGL----KFF--SVSKAHKLKNMVI--VDYSRSSELES 213 (520)
Q Consensus 145 ~~l~sLk~L~L~~v~~~~~~---l~~Lls~CP~LE~L~L~~c~~l----~~l--~I~~~~~Lk~L~I--~~~~~~~~~~~ 213 (520)
...++|++|+|+++.+++.. +...+..++.|++|+|.+|.-- ..+ .+...++|+.|++ .++........
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 34556666666666664433 3334555666777766666421 111 1223466777777 44543211000
Q ss_pred eeCCceeEEEeccccccCCCCCcceEEecccccch
Q 039643 214 IVAPSLQQLTLVRVIVVATCPNLKKLHLSEIVLED 248 (520)
Q Consensus 214 i~aP~L~~L~l~~~~~~~~l~~L~~L~L~~~~~~~ 248 (520)
. | ...+...++|++|+++++.++.
T Consensus 142 ~----l-------~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 142 E----I-------ANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp H----H-------HHHHHHCSSCCEEECCCSSHHH
T ss_pred H----H-------HHHHHhCCCcCEEeccCCCCCh
Confidence 0 0 0123445667777777666543
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.65 E-value=0.0076 Score=62.21 Aligned_cols=162 Identities=11% Similarity=0.130 Sum_probs=99.2
Q ss_pred ccccCCCccEEEEeccccCC-CcccCCCCCCCEEEecce-e-cChHHHHHHHhcCCCcceeeeecc-CCcceeccccccc
Q 039643 121 AIYSAKLLTTLVLNGCRLDE-PLIAINLNSLKNLSLQRV-Y-ANEQMVHNLIAECCSLEDLSLRYT-LGLKFFSVSKAHK 196 (520)
Q Consensus 121 ~l~~~~sL~~L~L~~c~l~~-p~~~~~l~sLk~L~L~~v-~-~~~~~l~~Lls~CP~LE~L~L~~c-~~l~~l~I~~~~~ 196 (520)
.+..|.+|+.++|..+.+.. +.......+|+.+.|... . +.+. .+.+|+.|+.+.+... ..+..-...+ .+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPENVSTIGQEAFRE-SG 249 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCTTCCEECTTTTTT-CC
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhh----HhhCCCCCCEEecCCCccCcccccccc-CC
Confidence 44568999999999865532 444444689999999643 2 2333 3578999999999763 1111112332 67
Q ss_pred cceEEEecccCCCC-ceeeeCCceeEEEecc------------ccccCCCCCcceEEecccccchhHHHHHHhCCcccce
Q 039643 197 LKNMVIVDYSRSSE-LESIVAPSLQQLTLVR------------VIVVATCPNLKKLHLSEIVLEDQEFHELISKFPLLED 263 (520)
Q Consensus 197 Lk~L~I~~~~~~~~-~~~i~aP~L~~L~l~~------------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll~~l~~L~~ 263 (520)
|+.+.+...-...+ ..--.+++|+.+.+.. ...|.+|++|+.+.+..+ ++. .-...|.+|++|+.
T Consensus 250 L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~-I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRI-LGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCCSCCE
T ss_pred ccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEE-EhhhhhcCCCCccE
Confidence 88888854321111 1122567888888742 234678999999998642 211 11245788999999
Q ss_pred eecccccc-ccccc-cccccccEEEeecC
Q 039643 264 LSVSSSQP-LERVK-FSSNLLKRVAFLFC 290 (520)
Q Consensus 264 L~L~~~~~-l~~~~-~~f~~L~~L~L~~c 290 (520)
+.|..... +.... ... +|+.+.+.+.
T Consensus 328 l~lp~~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 328 LTIPANVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp EEECTTCCEECTTSSSSS-CCCEEEECCS
T ss_pred EEECccccEEcHHhCCCC-CCCEEEEcCC
Confidence 99965421 11111 123 7888888763
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.40 E-value=0.002 Score=64.60 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=44.7
Q ss_pred ccccCcccccCCCccEEEEec-cccCC-C-cccCCCCCCCEEEecceecChHHHHHHHhcCCCcceeeeeccC
Q 039643 115 AYTLPQAIYSAKLLTTLVLNG-CRLDE-P-LIAINLNSLKNLSLQRVYANEQMVHNLIAECCSLEDLSLRYTL 184 (520)
Q Consensus 115 ~~~LP~~l~~~~sL~~L~L~~-c~l~~-p-~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~LE~L~L~~c~ 184 (520)
...+|. +..+++|++|+|++ +.+.. + ..+.++++|+.|+|+++.+.. ..+..+.+++.|+.|+|+++.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSC
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCc
Confidence 345777 77778888888885 66643 3 456778888888888877632 112234566777777777654
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.05 E-value=0.0038 Score=56.10 Aligned_cols=81 Identities=21% Similarity=0.177 Sum_probs=56.6
Q ss_pred CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCC-Cc-ccCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDE-PL-IAINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~-p~-~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.+++.|++... ....+ |..+..+++|++|+|+++.+.. |+ .+.++++|++|+|+++.+.. .....+..++.
T Consensus 30 ~~l~~L~L~~N-----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDN-----QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKS 103 (170)
T ss_dssp TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCCcEEEcCCC-----cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCC
Confidence 67888888664 23344 5566788999999999997744 44 35789999999999988731 11122455677
Q ss_pred cceeeeeccC
Q 039643 175 LEDLSLRYTL 184 (520)
Q Consensus 175 LE~L~L~~c~ 184 (520)
|+.|+|.++.
T Consensus 104 L~~L~L~~N~ 113 (170)
T 3g39_A 104 LTHIWLLNNP 113 (170)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 7777777653
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.97 E-value=0.0049 Score=55.67 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=57.2
Q ss_pred CCceEEEEEecCCCCCccccc-CcccccCCCccEEEEeccccCC-Ccc-cCCCCCCCEEEecceecChHHHHHHHhcCCC
Q 039643 98 NGVKELHIVVESSPHESAYTL-PQAIYSAKLLTTLVLNGCRLDE-PLI-AINLNSLKNLSLQRVYANEQMVHNLIAECCS 174 (520)
Q Consensus 98 ~~VkeL~L~~~~~~~~~~~~L-P~~l~~~~sL~~L~L~~c~l~~-p~~-~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP~ 174 (520)
.++++|++... ....+ |..+..+++|++|+|+++.+.. |+. +.++++|++|+|+++.+.. .....+..++.
T Consensus 33 ~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~ 106 (174)
T 2r9u_A 33 TDKQRLWLNNN-----QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKS 106 (174)
T ss_dssp TTCSEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCCcEEEeCCC-----CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccC
Confidence 67899988764 23344 5566788999999999998744 444 5789999999999987731 11122455677
Q ss_pred cceeeeeccC
Q 039643 175 LEDLSLRYTL 184 (520)
Q Consensus 175 LE~L~L~~c~ 184 (520)
|+.|+|.++.
T Consensus 107 L~~L~L~~N~ 116 (174)
T 2r9u_A 107 LTHIYLYNNP 116 (174)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 7777777664
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.23 E-value=0.054 Score=52.60 Aligned_cols=86 Identities=26% Similarity=0.214 Sum_probs=53.9
Q ss_pred HHHHHhcCCCcceeeeeccCC--cceec--cccccccceEEEecccCCCCceeeeCCceeEEEeccccccCCCCCcceEE
Q 039643 165 VHNLIAECCSLEDLSLRYTLG--LKFFS--VSKAHKLKNMVIVDYSRSSELESIVAPSLQQLTLVRVIVVATCPNLKKLH 240 (520)
Q Consensus 165 l~~Lls~CP~LE~L~L~~c~~--l~~l~--I~~~~~Lk~L~I~~~~~~~~~~~i~aP~L~~L~l~~~~~~~~l~~L~~L~ 240 (520)
++....++|.|+.|+|+++.- +..+. +..+++|+.|+++++.... . ..+ ..+..+ +|++|.
T Consensus 162 l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~----~~l--------~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E----REL--------DKIKGL-KLEELW 226 (267)
T ss_dssp HHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G----GGG--------GGGTTS-CCSEEE
T ss_pred HHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC--c----hhh--------hhcccC-CcceEE
Confidence 333446789999999998852 22221 2247888888888876311 0 001 012233 888899
Q ss_pred ecccccch------hHHHHHHhCCcccceee
Q 039643 241 LSEIVLED------QEFHELISKFPLLEDLS 265 (520)
Q Consensus 241 L~~~~~~~------~~~~~ll~~l~~L~~L~ 265 (520)
+++|.+.+ .....++..+|+|+.|+
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 98877653 23346788889988886
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.76 E-value=0.043 Score=53.29 Aligned_cols=58 Identities=26% Similarity=0.199 Sum_probs=32.7
Q ss_pred CCCccEEEEeccccCC----CcccCCCCCCCEEEecceec-ChHHHHHHHhcCCCcceeeeeccC
Q 039643 125 AKLLTTLVLNGCRLDE----PLIAINLNSLKNLSLQRVYA-NEQMVHNLIAECCSLEDLSLRYTL 184 (520)
Q Consensus 125 ~~sL~~L~L~~c~l~~----p~~~~~l~sLk~L~L~~v~~-~~~~l~~Lls~CP~LE~L~L~~c~ 184 (520)
+++|+.|+|+++.+.. |..+..+++|+.|+|+++.+ +-..+..+ .+. .|++|.|.++.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTST
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCc
Confidence 4567777777765532 22234667777777777766 32233332 223 67777776664
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=93.19 E-value=0.035 Score=55.34 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=55.5
Q ss_pred CCceEEEEEe-cCCCCCcccccC-cccccCCCccEEEEeccccCC--CcccCCCCCCCEEEecceecChHHHHHHHhcCC
Q 039643 98 NGVKELHIVV-ESSPHESAYTLP-QAIYSAKLLTTLVLNGCRLDE--PLIAINLNSLKNLSLQRVYANEQMVHNLIAECC 173 (520)
Q Consensus 98 ~~VkeL~L~~-~~~~~~~~~~LP-~~l~~~~sL~~L~L~~c~l~~--p~~~~~l~sLk~L~L~~v~~~~~~l~~Lls~CP 173 (520)
.++++|+|.. . ....+| ..+..+++|+.|+|+++.+.. |..+.++++|+.|+|+++.+.. .....+...+
T Consensus 31 ~~L~~L~l~~~n-----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~ 104 (347)
T 2ifg_A 31 ENLTELYIENQQ-----HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLS 104 (347)
T ss_dssp SCCSEEECCSCS-----SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCC
T ss_pred CCeeEEEccCCC-----CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcccCC
Confidence 4699999964 3 234555 456788999999999997743 4467899999999999998732 0011222233
Q ss_pred CcceeeeeccC
Q 039643 174 SLEDLSLRYTL 184 (520)
Q Consensus 174 ~LE~L~L~~c~ 184 (520)
|+.|+|.++.
T Consensus 105 -L~~l~l~~N~ 114 (347)
T 2ifg_A 105 -LQELVLSGNP 114 (347)
T ss_dssp -CCEEECCSSC
T ss_pred -ceEEEeeCCC
Confidence 7777777654
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.20 E-value=0.46 Score=48.22 Aligned_cols=177 Identities=11% Similarity=0.109 Sum_probs=88.0
Q ss_pred cccCCCccEEEEecc--ccCCCcccCCCCCCCEEEecceec--ChHHHHHHHhcCCCcceeeeeccC-Ccceeccccccc
Q 039643 122 IYSAKLLTTLVLNGC--RLDEPLIAINLNSLKNLSLQRVYA--NEQMVHNLIAECCSLEDLSLRYTL-GLKFFSVSKAHK 196 (520)
Q Consensus 122 l~~~~sL~~L~L~~c--~l~~p~~~~~l~sLk~L~L~~v~~--~~~~l~~Lls~CP~LE~L~L~~c~-~l~~l~I~~~~~ 196 (520)
+..|.+|+.+.+... .+. ...+.+++.|+.+.+..... .+ ....|..|+.+.+.... .+..-...++..
T Consensus 181 F~~c~~L~~i~l~~~~~~I~-~~~F~~~~~L~~i~~~~~~~~i~~-----~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~ 254 (394)
T 4fs7_A 181 FSGCGKLKSIKLPRNLKIIR-DYCFAECILLENMEFPNSLYYLGD-----FALSKTGVKNIIIPDSFTELGKSVFYGCTD 254 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEEC-TTTTTTCTTCCBCCCCTTCCEECT-----TTTTTCCCCEEEECTTCCEECSSTTTTCSS
T ss_pred ccCCCCceEEEcCCCceEeC-chhhccccccceeecCCCceEeeh-----hhcccCCCceEEECCCceeccccccccccc
Confidence 345788888888664 121 23466777888777754432 22 12346677777765431 111112223566
Q ss_pred cceEEEecccCCCC-ceeeeCCceeEEEec----cccccCCCCCcceEEeccc--ccchhHHHHHHhCCcccceeecccc
Q 039643 197 LKNMVIVDYSRSSE-LESIVAPSLQQLTLV----RVIVVATCPNLKKLHLSEI--VLEDQEFHELISKFPLLEDLSVSSS 269 (520)
Q Consensus 197 Lk~L~I~~~~~~~~-~~~i~aP~L~~L~l~----~~~~~~~l~~L~~L~L~~~--~~~~~~~~~ll~~l~~L~~L~L~~~ 269 (520)
|+.+.+........ ..-..+++++.+.+. ....+..+.+|+++.+..+ .+.+ ..+.+|++|+.+.|...
T Consensus 255 l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 255 LESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFIGE----EAFESCTSLVSIDLPYL 330 (394)
T ss_dssp CCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCCEECT----TTTTTCTTCCEECCCTT
T ss_pred ceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccccceech----hhhcCCCCCCEEEeCCc
Confidence 66666654321000 011123445544443 1223456667777766431 1211 23566777777776432
Q ss_pred ccccccc-cc---cccccEEEeecC-Cchh-HHhcCCCCccEeEecc
Q 039643 270 QPLERVK-FS---SNLLKRVAFLFC-RSLR-AVDLDTPNLLSFTFES 310 (520)
Q Consensus 270 ~~l~~~~-~~---f~~L~~L~L~~c-~~l~-~lL~~~P~L~~L~l~~ 310 (520)
+..++ .. ..+|+.+.+... .... ..+.+|++|+++++..
T Consensus 331 --v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 331 --VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp --CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred --ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence 22221 11 245666666431 1111 4456777777777743
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.56 E-value=0.27 Score=49.99 Aligned_cols=140 Identities=12% Similarity=0.158 Sum_probs=76.5
Q ss_pred cccccCCCccEEEEecc--ccCCCcccCCCCCCCEEEeccee--cChHHHHHHHhcCCCcceeeeeccCCcceecccccc
Q 039643 120 QAIYSAKLLTTLVLNGC--RLDEPLIAINLNSLKNLSLQRVY--ANEQMVHNLIAECCSLEDLSLRYTLGLKFFSVSKAH 195 (520)
Q Consensus 120 ~~l~~~~sL~~L~L~~c--~l~~p~~~~~l~sLk~L~L~~v~--~~~~~l~~Lls~CP~LE~L~L~~c~~l~~l~I~~~~ 195 (520)
...+.+..|+.+.+... .+. ...+.++..|+.+.+.... +... .+..|+.|+.+...... .......++.
T Consensus 224 ~~~~~~~~l~~i~ip~~~~~i~-~~~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~~~-i~~~~F~~~~ 297 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDSFTELG-KSVFYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGSVI-VPEKTFYGCS 297 (394)
T ss_dssp TTTTTTCCCCEEEECTTCCEEC-SSTTTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECSSE-ECTTTTTTCT
T ss_pred hhhcccCCCceEEECCCceecc-cccccccccceeEEcCCCcceeecc----ccccccccceeccCcee-eccccccccc
Confidence 34455677888877653 222 1345677778877775432 1222 23567777766554321 1111122356
Q ss_pred ccceEEEecccCCCCcee-eeCCceeEEEec------cccccCCCCCcceEEeccc--ccchhHHHHHHhCCcccceeec
Q 039643 196 KLKNMVIVDYSRSSELES-IVAPSLQQLTLV------RVIVVATCPNLKKLHLSEI--VLEDQEFHELISKFPLLEDLSV 266 (520)
Q Consensus 196 ~Lk~L~I~~~~~~~~~~~-i~aP~L~~L~l~------~~~~~~~l~~L~~L~L~~~--~~~~~~~~~ll~~l~~L~~L~L 266 (520)
+|+.+.+...-...+... -.+.+|+.+.++ +...|.+|.+|+.+.+..+ .+.. ..|.+|++|+.+.+
T Consensus 298 ~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~----~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 298 SLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGA----NAFQGCINLKKVEL 373 (394)
T ss_dssp TCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTTCCEECT----TTBTTCTTCCEEEE
T ss_pred cccccccccccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECccccEehH----HHhhCCCCCCEEEE
Confidence 677666644321011111 134666666664 2345678888888888542 2222 35778888998888
Q ss_pred ccc
Q 039643 267 SSS 269 (520)
Q Consensus 267 ~~~ 269 (520)
...
T Consensus 374 p~~ 376 (394)
T 4fs7_A 374 PKR 376 (394)
T ss_dssp EGG
T ss_pred CCC
Confidence 654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=87.16 E-value=0.83 Score=46.24 Aligned_cols=116 Identities=11% Similarity=0.142 Sum_probs=58.2
Q ss_pred HhcCCCcceeeeeccC-CcceeccccccccceEEEecccCCCCce-eeeCCceeEEEec------cccccCCCCCcceEE
Q 039643 169 IAECCSLEDLSLRYTL-GLKFFSVSKAHKLKNMVIVDYSRSSELE-SIVAPSLQQLTLV------RVIVVATCPNLKKLH 240 (520)
Q Consensus 169 ls~CP~LE~L~L~~c~-~l~~l~I~~~~~Lk~L~I~~~~~~~~~~-~i~aP~L~~L~l~------~~~~~~~l~~L~~L~ 240 (520)
+.+|..|+.+.+.+.. .+..-...++++|+.+.+...-...+.. --.+++|+.+.++ +...|.+|.+|+++.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEE
Confidence 4567777777765431 1111122336667766664322101111 1235677777765 234567888888888
Q ss_pred ecc--cccchhHHHHHHhCCcccceeeccccccccccccccccccEEEee
Q 039643 241 LSE--IVLEDQEFHELISKFPLLEDLSVSSSQPLERVKFSSNLLKRVAFL 288 (520)
Q Consensus 241 L~~--~~~~~~~~~~ll~~l~~L~~L~L~~~~~l~~~~~~f~~L~~L~L~ 288 (520)
|.. ..+.. ..|.+|++|+.+++.+.......-....+|+.+.+.
T Consensus 341 ip~sv~~I~~----~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 341 IPSSVTKIPE----SAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp ECTTCCBCCG----GGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred ECcccCEEhH----hHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence 853 22322 357788888888887654211111123456666553
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.64 E-value=0.67 Score=46.94 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=67.2
Q ss_pred ccccccceEEEecccCCCC-ceeeeCCceeEEEec------cccccCCCCCcceEEecc--cccchhHHHHHHhCCcccc
Q 039643 192 SKAHKLKNMVIVDYSRSSE-LESIVAPSLQQLTLV------RVIVVATCPNLKKLHLSE--IVLEDQEFHELISKFPLLE 262 (520)
Q Consensus 192 ~~~~~Lk~L~I~~~~~~~~-~~~i~aP~L~~L~l~------~~~~~~~l~~L~~L~L~~--~~~~~~~~~~ll~~l~~L~ 262 (520)
.++.+|+.+.+.......+ ....++++|+.+.++ +...|.+|.+|+++.|.. ..+.+ ..|.+|.+|+
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~ 337 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQLE 337 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCC
T ss_pred eecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCCC
Confidence 3578888888754431111 112246788888875 234578899999999964 23322 3578999999
Q ss_pred eeeccccccccccc----cccccccEEEeecCCchhHHhcCCCCccEeEecc
Q 039643 263 DLSVSSSQPLERVK----FSSNLLKRVAFLFCRSLRAVDLDTPNLLSFTFES 310 (520)
Q Consensus 263 ~L~L~~~~~l~~~~----~~f~~L~~L~L~~c~~l~~lL~~~P~L~~L~l~~ 310 (520)
.+.|... +..++ ..+.+|+.+.+.+..........+.+|+.+.+..
T Consensus 338 ~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 338 RIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp EEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-------
T ss_pred EEEECcc--cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCC
Confidence 9999653 22222 1246799999876333334446677888887753
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.76 E-value=0.33 Score=44.70 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=50.9
Q ss_pred CCccHHHHHHHHHh--CCceEEEEEec-CCCCCcccccCcccccCCCccEEEEeccccCC------CcccCCCCCCCEEE
Q 039643 84 SSSLVDKWIGLAVG--NGVKELHIVVE-SSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE------PLIAINLNSLKNLS 154 (520)
Q Consensus 84 ~~~~v~~Wl~~a~~--~~VkeL~L~~~-~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~ 154 (520)
...+++..+..+.. ..+++|+|... .........|-..+-.-.+|+.|+|++|.+.. ......=..|++|+
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence 45678888888765 45777777531 11111122333444445677777777765532 01112335677777
Q ss_pred ecceecChHHHHHHHh---cCCCcceeeeec
Q 039643 155 LQRVYANEQMVHNLIA---ECCSLEDLSLRY 182 (520)
Q Consensus 155 L~~v~~~~~~l~~Lls---~CP~LE~L~L~~ 182 (520)
|.++.+++.....+.. .-..|++|+|.+
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 7776665555444432 223355555543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=71.02 E-value=8.4 Score=38.24 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=72.7
Q ss_pred cccCCCccEEEEecc-ccCCCcccCCCCCCCEEEecce-e-cChHHHHHHHhcCCCcceeeeecc-CCcceecccccccc
Q 039643 122 IYSAKLLTTLVLNGC-RLDEPLIAINLNSLKNLSLQRV-Y-ANEQMVHNLIAECCSLEDLSLRYT-LGLKFFSVSKAHKL 197 (520)
Q Consensus 122 l~~~~sL~~L~L~~c-~l~~p~~~~~l~sLk~L~L~~v-~-~~~~~l~~Lls~CP~LE~L~L~~c-~~l~~l~I~~~~~L 197 (520)
...+.++....+... .......+....+|+.+.+... . +.+. .+.+|..|+.+.+... ..+..-...++.+|
T Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPKNVTSIGSFLLQNCTAL 265 (379)
T ss_dssp CCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECTTCCEECTTTTTTCTTC
T ss_pred ccccccccccccccceeEEeecccccccccceeeeccceeEEccc----cccCCccceEEEcCCCccEeCccccceeehh
Confidence 334555555555442 1111234456667777776432 1 1222 2456777777777543 11111223345667
Q ss_pred ceEEEecccCCCC-ceeeeCCceeEEEecc-------ccccCCCCCcceEEecc--cccchhHHHHHHhCCcccceeecc
Q 039643 198 KNMVIVDYSRSSE-LESIVAPSLQQLTLVR-------VIVVATCPNLKKLHLSE--IVLEDQEFHELISKFPLLEDLSVS 267 (520)
Q Consensus 198 k~L~I~~~~~~~~-~~~i~aP~L~~L~l~~-------~~~~~~l~~L~~L~L~~--~~~~~~~~~~ll~~l~~L~~L~L~ 267 (520)
+.+.+...-...+ ..--.+++|+.+.++. ...|.+|.+|+.+.|.. ..+.. ..|.+|++|+.+.+.
T Consensus 266 ~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~----~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 266 KTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQV----YAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCCCCCC
T ss_pred ccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHH----HHhhCCCCCCEEEEC
Confidence 7776643321000 1112356677776641 33567888999988853 22322 346788899988875
Q ss_pred c
Q 039643 268 S 268 (520)
Q Consensus 268 ~ 268 (520)
.
T Consensus 342 ~ 342 (379)
T 4h09_A 342 K 342 (379)
T ss_dssp T
T ss_pred C
Confidence 4
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=70.89 E-value=9.6 Score=37.78 Aligned_cols=162 Identities=11% Similarity=0.119 Sum_probs=90.9
Q ss_pred cccccCCCccEEEEeccccC--------------CCcccCCCCCCCEEEecce-ec-ChHHHHHHHhcCCCcceeeeecc
Q 039643 120 QAIYSAKLLTTLVLNGCRLD--------------EPLIAINLNSLKNLSLQRV-YA-NEQMVHNLIAECCSLEDLSLRYT 183 (520)
Q Consensus 120 ~~l~~~~sL~~L~L~~c~l~--------------~p~~~~~l~sLk~L~L~~v-~~-~~~~l~~Lls~CP~LE~L~L~~c 183 (520)
..++.|..|+...+...... ....+.....++...+... .. .. .....|..|+.+.+...
T Consensus 152 ~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~f~~~~~l~~i~~~~~ 227 (379)
T 4h09_A 152 GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTA----YGFSYGKNLKKITITSG 227 (379)
T ss_dssp CTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECT----TTTTTCSSCSEEECCTT
T ss_pred chhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEee----cccccccccceeeeccc
Confidence 35667888888887653110 0112334455666655432 11 21 12457889998887543
Q ss_pred C-CcceeccccccccceEEEecccCCCC-ceeeeCCceeEEEecc------ccccCCCCCcceEEecccccchhHHHHHH
Q 039643 184 L-GLKFFSVSKAHKLKNMVIVDYSRSSE-LESIVAPSLQQLTLVR------VIVVATCPNLKKLHLSEIVLEDQEFHELI 255 (520)
Q Consensus 184 ~-~l~~l~I~~~~~Lk~L~I~~~~~~~~-~~~i~aP~L~~L~l~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~ll 255 (520)
- ....-...++.+|+.+.+...-...+ ...-.+.+|+.+.++. ...+.+|.+|+++.+..+.++. .-...|
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~aF 306 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRVF 306 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCE-ECTTTT
T ss_pred eeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccccceeccccccccccccccccccccccce-ehhhhh
Confidence 1 11111233478888888765421111 1112456788887752 3457889999999997544321 112457
Q ss_pred hCCcccceeecccccccccccc-cc---ccccEEEee
Q 039643 256 SKFPLLEDLSVSSSQPLERVKF-SS---NLLKRVAFL 288 (520)
Q Consensus 256 ~~l~~L~~L~L~~~~~l~~~~~-~f---~~L~~L~L~ 288 (520)
.+|++|+.+.|... +..++. .| .+|+.+.+.
T Consensus 307 ~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 307 MDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred cCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 89999999999643 222221 23 457776663
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=54.38 E-value=7.1 Score=32.87 Aligned_cols=42 Identities=31% Similarity=0.271 Sum_probs=29.7
Q ss_pred ccCcccccCCCccEEEEeccccCC-C-cccCCCCCCCEEEecceec
Q 039643 117 TLPQAIYSAKLLTTLVLNGCRLDE-P-LIAINLNSLKNLSLQRVYA 160 (520)
Q Consensus 117 ~LP~~l~~~~sL~~L~L~~c~l~~-p-~~~~~l~sLk~L~L~~v~~ 160 (520)
.+|..+. .+|++|+|+++.+.. | ..+..+++|++|+|.++.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5565432 468889999887743 3 3456788889998888876
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=54.32 E-value=5.2 Score=36.61 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=62.6
Q ss_pred HHHHHHh--CCceEEEEEecCCCCCcccccCcccccCCCccEEEEeccccCC------CcccCCCCCCCEEEecce---e
Q 039643 91 WIGLAVG--NGVKELHIVVESSPHESAYTLPQAIYSAKLLTTLVLNGCRLDE------PLIAINLNSLKNLSLQRV---Y 159 (520)
Q Consensus 91 Wl~~a~~--~~VkeL~L~~~~~~~~~~~~LP~~l~~~~sL~~L~L~~c~l~~------p~~~~~l~sLk~L~L~~v---~ 159 (520)
.+..|.. ..+++|+|......+.....|-..+..-++|++|+|+++.+.. ......-..|+.|+|+++ .
T Consensus 61 ~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ 140 (197)
T 1pgv_A 61 SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV 140 (197)
T ss_dssp HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred HHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcC
Confidence 4555554 5799999976532222344556666677899999999987642 122345567999999854 4
Q ss_pred cChH---HHHHHHhcCCCcceeeeeccC
Q 039643 160 ANEQ---MVHNLIAECCSLEDLSLRYTL 184 (520)
Q Consensus 160 ~~~~---~l~~Lls~CP~LE~L~L~~c~ 184 (520)
+++. .+...+..-+.|..|++..+.
T Consensus 141 ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 141 LGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 5443 455667777889988887653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=33.17 E-value=13 Score=31.22 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=6.5
Q ss_pred HhCCcccceeecccc
Q 039643 255 ISKFPLLEDLSVSSS 269 (520)
Q Consensus 255 l~~l~~L~~L~L~~~ 269 (520)
+..+++|+.|.|.++
T Consensus 51 f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 51 LDALPALRTAHLGAN 65 (130)
T ss_dssp GGGCTTCCEEECCSS
T ss_pred hhhccccCEEEecCC
Confidence 334444444444443
No 165
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=28.91 E-value=12 Score=25.85 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=16.1
Q ss_pred cccceeeecccCchhHHHhH
Q 039643 6 ELQIMDRISELPTFWKEKDE 25 (520)
Q Consensus 6 ~~~~AvrTsvLSkRWr~lW~ 25 (520)
+.++.++.+.+||+|+.+-.
T Consensus 25 ~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 25 CLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp CGGGHHHHHTTCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 35778899999999998654
Done!