Query 039644
Match_columns 192
No_of_seqs 106 out of 1266
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 11:43:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.8E-33 1.5E-37 237.5 16.6 184 1-189 190-385 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-33 5.4E-38 215.8 10.4 185 1-190 30-226 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.3E-28 2.9E-33 218.7 22.0 190 1-190 218-418 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.0 8.3E-08 1.8E-12 73.3 19.0 180 1-187 54-267 (269)
5 PRK04841 transcriptional regul 99.0 1.8E-08 4E-13 89.0 14.3 160 1-173 43-231 (903)
6 PF05729 NACHT: NACHT domain 99.0 1.4E-08 3E-13 71.6 10.7 132 1-136 11-163 (166)
7 PF01637 Arch_ATPase: Archaeal 98.8 9.8E-08 2.1E-12 70.9 10.3 162 1-166 31-233 (234)
8 PF13173 AAA_14: AAA domain 98.6 2.9E-07 6.3E-12 62.5 8.7 109 1-128 13-127 (128)
9 PRK00411 cdc6 cell division co 98.5 6.6E-06 1.4E-10 66.3 15.4 181 1-186 66-282 (394)
10 PRK06893 DNA replication initi 98.5 2.2E-06 4.8E-11 64.1 11.5 141 1-169 50-205 (229)
11 COG2256 MGS1 ATPase related to 98.4 3E-06 6.5E-11 66.9 10.6 138 1-163 59-208 (436)
12 COG2909 MalT ATP-dependent tra 98.4 1E-05 2.2E-10 69.3 12.6 160 1-173 48-239 (894)
13 COG3903 Predicted ATPase [Gene 98.3 9.4E-07 2E-11 69.8 4.9 167 1-175 25-197 (414)
14 PF14516 AAA_35: AAA-like doma 98.3 5.6E-05 1.2E-09 59.7 14.5 166 1-174 42-246 (331)
15 TIGR00678 holB DNA polymerase 98.2 0.00011 2.3E-09 53.2 13.7 89 67-163 95-187 (188)
16 TIGR02928 orc1/cdc6 family rep 98.2 0.00022 4.7E-09 56.9 16.7 159 1-164 51-243 (365)
17 PRK14087 dnaA chromosomal repl 98.2 4.4E-05 9.5E-10 62.6 12.7 153 1-168 152-320 (450)
18 TIGR03420 DnaA_homol_Hda DnaA 98.1 5.4E-05 1.2E-09 56.2 11.0 140 1-168 49-202 (226)
19 PRK13342 recombination factor 98.1 0.00011 2.4E-09 59.7 13.4 143 1-168 47-197 (413)
20 PRK05564 DNA polymerase III su 98.1 0.00029 6.2E-09 55.2 15.3 141 1-164 37-187 (313)
21 PRK12323 DNA polymerase III su 98.1 0.00011 2.4E-09 62.2 13.3 98 67-166 123-224 (700)
22 PRK07003 DNA polymerase III su 98.1 0.00011 2.4E-09 63.1 13.3 98 67-166 118-220 (830)
23 PRK14961 DNA polymerase III su 98.1 0.00027 5.9E-09 56.5 14.7 95 67-163 118-216 (363)
24 PRK08727 hypothetical protein; 98.0 9.6E-05 2.1E-09 55.4 11.0 136 1-164 52-201 (233)
25 PRK14949 DNA polymerase III su 98.0 0.00017 3.7E-09 63.0 13.3 98 66-165 117-218 (944)
26 PF00308 Bac_DnaA: Bacterial d 98.0 0.00014 3E-09 54.0 10.2 145 1-164 45-205 (219)
27 TIGR00635 ruvB Holliday juncti 98.0 0.00011 2.5E-09 57.1 10.2 54 115-170 151-204 (305)
28 PF13401 AAA_22: AAA domain; P 97.9 3E-05 6.5E-10 52.4 6.1 98 1-105 15-125 (131)
29 PRK14960 DNA polymerase III su 97.9 0.00045 9.7E-09 58.7 13.6 96 67-164 117-216 (702)
30 PRK09087 hypothetical protein; 97.9 0.0009 2E-08 50.0 13.9 112 71-186 90-222 (226)
31 PRK06645 DNA polymerase III su 97.9 0.001 2.2E-08 55.3 15.1 95 67-163 127-225 (507)
32 PRK14963 DNA polymerase III su 97.9 0.00089 1.9E-08 55.8 14.5 96 67-164 115-214 (504)
33 PRK08084 DNA replication initi 97.9 0.00045 9.8E-09 51.9 11.8 140 1-168 56-210 (235)
34 COG1373 Predicted ATPase (AAA+ 97.9 0.00044 9.6E-09 55.9 12.2 62 68-130 94-161 (398)
35 PRK00080 ruvB Holliday junctio 97.9 0.00026 5.7E-09 55.8 10.7 53 115-169 172-224 (328)
36 PRK05642 DNA replication initi 97.8 0.00043 9.2E-09 52.0 11.2 141 1-169 56-210 (234)
37 PRK07994 DNA polymerase III su 97.8 0.00045 9.7E-09 58.9 12.2 97 67-165 118-218 (647)
38 PRK05707 DNA polymerase III su 97.8 0.0015 3.2E-08 51.5 14.3 92 68-165 106-201 (328)
39 PRK04132 replication factor C 97.8 0.0015 3.2E-08 57.4 15.5 147 1-164 577-728 (846)
40 PRK07471 DNA polymerase III su 97.8 0.0015 3.3E-08 52.2 14.5 95 67-167 140-238 (365)
41 TIGR00362 DnaA chromosomal rep 97.8 0.00045 9.9E-09 56.0 11.7 144 1-163 147-306 (405)
42 PRK14957 DNA polymerase III su 97.8 0.0014 3.1E-08 54.9 14.7 94 67-162 118-215 (546)
43 PRK00149 dnaA chromosomal repl 97.8 0.0004 8.7E-09 57.1 11.4 144 1-163 159-318 (450)
44 PRK14964 DNA polymerase III su 97.8 0.0015 3.3E-08 54.0 14.3 95 67-163 115-213 (491)
45 PRK07940 DNA polymerase III su 97.8 0.0018 3.8E-08 52.4 14.3 91 67-164 116-210 (394)
46 PLN03025 replication factor C 97.8 0.00092 2E-08 52.5 12.6 147 1-163 45-196 (319)
47 PRK14951 DNA polymerase III su 97.8 0.0015 3.3E-08 55.5 14.4 95 68-164 124-222 (618)
48 PRK14958 DNA polymerase III su 97.8 0.00093 2E-08 55.7 12.9 96 67-164 118-217 (509)
49 PRK12402 replication factor C 97.8 0.0016 3.5E-08 51.3 13.8 95 68-164 125-223 (337)
50 PRK14088 dnaA chromosomal repl 97.7 0.0013 2.8E-08 54.0 13.3 142 1-160 141-298 (440)
51 PRK09376 rho transcription ter 97.7 6.2E-05 1.4E-09 60.0 5.4 77 1-80 180-268 (416)
52 PRK09112 DNA polymerase III su 97.7 0.0072 1.6E-07 48.1 16.9 98 67-168 140-241 (351)
53 PRK07764 DNA polymerase III su 97.7 0.0017 3.7E-08 57.1 14.3 94 67-162 119-216 (824)
54 PRK08691 DNA polymerase III su 97.6 0.001 2.2E-08 56.9 11.5 98 67-166 118-219 (709)
55 PRK14086 dnaA chromosomal repl 97.6 0.0028 6.1E-08 53.7 13.9 121 1-138 325-461 (617)
56 PRK04195 replication factor C 97.6 0.0019 4.1E-08 53.7 12.9 141 1-164 50-199 (482)
57 PRK00440 rfc replication facto 97.6 0.0037 7.9E-08 48.8 14.0 94 68-163 102-199 (319)
58 PRK14969 DNA polymerase III su 97.6 0.0019 4.1E-08 54.2 12.7 94 67-162 118-215 (527)
59 COG0593 DnaA ATPase involved i 97.6 0.0032 7E-08 50.7 13.2 121 1-137 124-258 (408)
60 TIGR01242 26Sp45 26S proteasom 97.6 0.0014 3E-08 52.5 11.2 138 1-162 167-329 (364)
61 cd01128 rho_factor Transcripti 97.6 0.00018 4E-09 54.4 5.7 77 1-80 27-115 (249)
62 PRK14956 DNA polymerase III su 97.5 0.003 6.4E-08 52.0 12.6 95 67-163 120-218 (484)
63 TIGR02397 dnaX_nterm DNA polym 97.5 0.012 2.6E-07 46.7 16.0 99 67-167 116-218 (355)
64 PRK14959 DNA polymerase III su 97.5 0.004 8.6E-08 52.9 13.5 100 67-168 118-222 (624)
65 PRK14962 DNA polymerase III su 97.5 0.0078 1.7E-07 49.8 14.9 101 67-169 116-221 (472)
66 PRK08116 hypothetical protein; 97.5 0.00054 1.2E-08 52.5 7.7 92 1-106 125-221 (268)
67 PRK12422 chromosomal replicati 97.5 0.0049 1.1E-07 50.6 13.4 120 1-137 152-285 (445)
68 PRK08903 DnaA regulatory inact 97.5 0.0012 2.6E-08 49.1 8.8 100 70-171 92-203 (227)
69 PRK13341 recombination factor 97.4 0.0042 9.1E-08 54.0 13.0 136 1-162 63-212 (725)
70 KOG2028 ATPase related to the 97.4 0.0025 5.4E-08 50.4 10.4 141 1-162 173-331 (554)
71 PRK14950 DNA polymerase III su 97.4 0.013 2.7E-07 50.0 15.1 97 67-165 119-219 (585)
72 PRK09111 DNA polymerase III su 97.4 0.01 2.2E-07 50.5 14.1 98 67-166 131-232 (598)
73 PRK14955 DNA polymerase III su 97.4 0.0059 1.3E-07 49.5 12.3 96 67-164 126-225 (397)
74 TIGR00767 rho transcription te 97.3 0.00071 1.5E-08 54.3 6.6 77 1-80 179-267 (415)
75 PRK14953 DNA polymerase III su 97.3 0.031 6.7E-07 46.5 16.2 96 67-164 118-217 (486)
76 PRK05896 DNA polymerase III su 97.3 0.0084 1.8E-07 50.8 12.8 93 68-162 119-215 (605)
77 PRK14952 DNA polymerase III su 97.3 0.019 4.1E-07 48.8 14.9 94 67-162 117-214 (584)
78 PRK08769 DNA polymerase III su 97.2 0.052 1.1E-06 42.7 15.8 93 67-167 112-208 (319)
79 PRK14970 DNA polymerase III su 97.2 0.025 5.5E-07 45.3 14.3 94 67-162 107-204 (367)
80 cd00009 AAA The AAA+ (ATPases 97.2 0.0043 9.4E-08 42.0 8.3 94 1-107 30-131 (151)
81 PTZ00112 origin recognition co 97.1 0.018 4E-07 50.8 13.2 162 1-170 792-985 (1164)
82 PRK14954 DNA polymerase III su 97.1 0.033 7.2E-07 47.7 14.5 94 67-162 126-223 (620)
83 PRK08451 DNA polymerase III su 97.1 0.035 7.6E-07 46.6 14.3 96 67-164 116-215 (535)
84 PRK06647 DNA polymerase III su 97.0 0.048 1E-06 46.2 14.7 95 67-163 118-216 (563)
85 PRK06620 hypothetical protein; 97.0 0.0083 1.8E-07 44.4 9.0 90 70-163 87-185 (214)
86 PRK06305 DNA polymerase III su 97.0 0.05 1.1E-06 44.9 14.3 94 67-162 120-217 (451)
87 PRK14971 DNA polymerase III su 97.0 0.052 1.1E-06 46.6 14.6 94 68-163 121-218 (614)
88 PRK14965 DNA polymerase III su 97.0 0.032 7E-07 47.5 13.3 93 67-161 118-214 (576)
89 COG1474 CDC6 Cdc6-related prot 96.9 0.12 2.5E-06 41.6 15.6 130 1-138 53-205 (366)
90 PRK14948 DNA polymerase III su 96.9 0.068 1.5E-06 45.9 15.0 97 67-165 120-220 (620)
91 PRK07133 DNA polymerase III su 96.9 0.066 1.4E-06 46.5 14.8 94 67-162 117-214 (725)
92 PF00004 AAA: ATPase family as 96.9 0.012 2.7E-07 39.4 8.8 15 1-15 9-23 (132)
93 KOG0989 Replication factor C, 96.9 0.013 2.8E-07 45.3 9.3 88 71-160 132-223 (346)
94 TIGR02881 spore_V_K stage V sp 96.9 0.014 3E-07 44.6 9.7 69 70-138 107-193 (261)
95 PRK05563 DNA polymerase III su 96.8 0.077 1.7E-06 45.1 14.4 95 67-163 118-216 (559)
96 PHA02544 44 clamp loader, smal 96.8 0.024 5.3E-07 44.3 10.7 66 68-133 100-170 (316)
97 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0067 1.5E-07 46.4 7.2 78 1-81 80-176 (274)
98 TIGR02903 spore_lon_C ATP-depe 96.8 0.034 7.3E-07 47.7 12.0 111 57-169 281-397 (615)
99 PF05496 RuvB_N: Holliday junc 96.7 0.023 4.9E-07 42.2 9.3 69 98-168 152-222 (233)
100 PRK03992 proteasome-activating 96.7 0.044 9.6E-07 44.4 11.9 91 67-161 223-337 (389)
101 PRK08181 transposase; Validate 96.7 0.0069 1.5E-07 46.4 6.6 89 1-106 117-209 (269)
102 PRK06090 DNA polymerase III su 96.7 0.22 4.7E-06 39.2 16.8 91 67-167 107-201 (319)
103 PRK07399 DNA polymerase III su 96.7 0.18 3.8E-06 39.7 14.4 94 67-166 123-220 (314)
104 TIGR02880 cbbX_cfxQ probable R 96.7 0.055 1.2E-06 41.9 11.5 69 69-137 122-209 (284)
105 COG3899 Predicted ATPase [Gene 96.6 0.04 8.7E-07 49.0 11.8 104 67-173 153-266 (849)
106 PRK06871 DNA polymerase III su 96.6 0.25 5.4E-06 39.0 16.6 89 67-162 106-198 (325)
107 PRK07993 DNA polymerase III su 96.6 0.17 3.8E-06 40.1 13.9 90 67-163 107-200 (334)
108 CHL00176 ftsH cell division pr 96.6 0.1 2.2E-06 45.0 13.3 97 61-160 268-387 (638)
109 CHL00181 cbbX CbbX; Provisiona 96.5 0.16 3.4E-06 39.4 13.2 68 70-137 124-210 (287)
110 PRK08058 DNA polymerase III su 96.5 0.15 3.2E-06 40.3 13.3 69 67-135 109-181 (329)
111 TIGR03689 pup_AAA proteasome A 96.5 0.017 3.6E-07 48.2 8.2 70 67-136 288-378 (512)
112 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.008 1.7E-07 42.3 5.2 118 1-121 13-153 (159)
113 PTZ00454 26S protease regulato 96.4 0.059 1.3E-06 43.8 10.8 94 66-163 236-353 (398)
114 PF05621 TniB: Bacterial TniB 96.4 0.16 3.5E-06 39.4 12.5 160 1-165 72-259 (302)
115 PRK12608 transcription termina 96.3 0.019 4.2E-07 45.8 7.2 75 1-79 144-231 (380)
116 TIGR01241 FtsH_fam ATP-depende 96.3 0.099 2.1E-06 43.7 11.6 93 66-161 145-260 (495)
117 PRK12377 putative replication 96.2 0.024 5.2E-07 42.9 7.1 89 1-105 112-205 (248)
118 PRK06964 DNA polymerase III su 96.1 0.26 5.7E-06 39.2 12.7 88 67-164 131-222 (342)
119 TIGR02639 ClpA ATP-dependent C 96.1 0.35 7.5E-06 42.6 14.5 76 1-89 495-576 (731)
120 PF13177 DNA_pol3_delta2: DNA 96.1 0.071 1.5E-06 37.6 8.6 58 67-124 101-162 (162)
121 PTZ00361 26 proteosome regulat 96.1 0.05 1.1E-06 44.7 8.8 117 1-137 228-368 (438)
122 PRK09183 transposase/IS protei 96.1 0.025 5.4E-07 43.1 6.6 24 1-24 113-136 (259)
123 PRK06921 hypothetical protein; 96.0 0.019 4E-07 44.0 5.4 25 1-25 128-153 (266)
124 COG2812 DnaX DNA polymerase II 95.9 0.22 4.8E-06 41.7 11.8 67 70-136 121-191 (515)
125 smart00382 AAA ATPases associa 95.9 0.045 9.7E-07 36.5 6.7 25 1-25 13-37 (148)
126 KOG0735 AAA+-type ATPase [Post 95.8 0.12 2.7E-06 44.5 10.1 62 1-78 442-504 (952)
127 PRK06835 DNA replication prote 95.7 0.029 6.3E-07 44.3 5.6 90 1-105 194-288 (329)
128 PRK06526 transposase; Provisio 95.7 0.026 5.7E-07 42.9 5.2 88 1-106 109-201 (254)
129 PF04665 Pox_A32: Poxvirus A32 95.7 0.043 9.4E-07 41.3 6.2 25 1-25 24-48 (241)
130 PRK08939 primosomal protein Dn 95.5 0.067 1.5E-06 41.8 7.1 88 1-105 167-260 (306)
131 COG3267 ExeA Type II secretory 95.5 0.76 1.6E-05 34.9 13.6 163 1-169 62-247 (269)
132 PRK08699 DNA polymerase III su 95.4 0.42 9.1E-06 37.8 11.3 68 68-135 113-184 (325)
133 TIGR01243 CDC48 AAA family ATP 95.4 0.13 2.9E-06 45.1 9.2 137 1-161 498-657 (733)
134 PRK07952 DNA replication prote 95.4 0.089 1.9E-06 39.8 7.1 90 1-105 110-204 (244)
135 COG1222 RPT1 ATP-dependent 26S 95.3 0.84 1.8E-05 36.4 12.2 147 1-171 196-371 (406)
136 TIGR03345 VI_ClpV1 type VI sec 95.2 0.049 1.1E-06 48.5 6.1 15 1-15 607-621 (852)
137 CHL00095 clpC Clp protease ATP 95.2 0.076 1.6E-06 47.2 7.2 80 1-90 550-635 (821)
138 KOG0741 AAA+-type ATPase [Post 95.2 0.31 6.8E-06 40.8 10.1 149 1-172 549-717 (744)
139 TIGR03346 chaperone_ClpB ATP-d 95.2 0.096 2.1E-06 46.8 7.8 95 1-105 606-717 (852)
140 COG0542 clpA ATP-binding subun 95.1 0.061 1.3E-06 46.9 6.2 80 1-90 532-617 (786)
141 PF01695 IstB_IS21: IstB-like 95.1 0.02 4.4E-07 41.1 2.8 62 1-79 58-119 (178)
142 CHL00195 ycf46 Ycf46; Provisio 94.9 0.13 2.9E-06 42.8 7.4 95 67-162 317-430 (489)
143 TIGR00708 cobA cob(I)alamin ad 94.7 0.21 4.6E-06 35.6 7.0 66 57-122 85-156 (173)
144 PRK10865 protein disaggregatio 94.6 0.12 2.7E-06 46.1 6.9 79 1-89 609-693 (857)
145 COG1484 DnaC DNA replication p 94.5 0.14 3E-06 39.0 6.1 63 1-79 116-178 (254)
146 cd01131 PilT Pilus retraction 94.4 0.14 3E-06 37.4 5.8 100 1-109 12-112 (198)
147 PRK10536 hypothetical protein; 94.4 0.2 4.3E-06 38.1 6.6 33 69-104 177-211 (262)
148 PRK05986 cob(I)alamin adenolsy 94.3 0.19 4.2E-06 36.4 6.2 66 57-122 103-174 (191)
149 TIGR03345 VI_ClpV1 type VI sec 94.2 0.7 1.5E-05 41.4 10.6 67 67-135 279-362 (852)
150 TIGR02640 gas_vesic_GvpN gas v 94.0 0.9 2E-05 34.7 9.7 68 69-136 106-198 (262)
151 COG0470 HolB ATPase involved i 94.0 1.1 2.3E-05 35.0 10.3 61 67-127 108-172 (325)
152 TIGR01243 CDC48 AAA family ATP 93.9 0.42 9.2E-06 42.1 8.6 93 66-161 269-381 (733)
153 PRK07276 DNA polymerase III su 93.8 2.5 5.4E-05 32.9 12.9 66 67-133 103-172 (290)
154 TIGR02639 ClpA ATP-dependent C 93.8 0.42 9.2E-06 42.0 8.4 22 115-136 337-358 (731)
155 PF13191 AAA_16: AAA ATPase do 93.6 0.068 1.5E-06 38.0 2.9 17 1-17 35-51 (185)
156 PRK10733 hflB ATP-dependent me 93.5 0.97 2.1E-05 39.2 10.0 73 66-138 242-337 (644)
157 PRK08118 topology modulation p 93.4 0.28 6.1E-06 34.7 5.6 25 1-25 12-39 (167)
158 cd00544 CobU Adenosylcobinamid 93.3 0.26 5.6E-06 35.1 5.3 114 1-137 10-145 (169)
159 cd01123 Rad51_DMC1_radA Rad51_ 93.2 0.48 1E-05 35.3 7.0 26 1-26 30-61 (235)
160 PF05673 DUF815: Protein of un 93.1 0.86 1.9E-05 34.4 7.9 46 66-111 104-156 (249)
161 PF08423 Rad51: Rad51; InterP 92.7 0.17 3.6E-06 38.6 3.8 72 1-78 49-143 (256)
162 KOG2543 Origin recognition com 92.6 0.34 7.3E-06 38.9 5.5 124 1-135 41-192 (438)
163 PRK11331 5-methylcytosine-spec 92.5 0.26 5.6E-06 40.6 4.8 72 1-81 205-285 (459)
164 KOG0991 Replication factor C, 92.5 2.9 6.2E-05 31.7 9.8 38 151-188 228-266 (333)
165 PRK09361 radB DNA repair and r 92.3 0.53 1.2E-05 34.9 6.1 26 1-26 34-59 (225)
166 KOG0733 Nuclear AAA ATPase (VC 92.3 2.8 6E-05 36.1 10.5 139 1-161 556-718 (802)
167 TIGR02237 recomb_radB DNA repa 92.2 0.64 1.4E-05 34.0 6.3 26 1-26 23-48 (209)
168 COG1066 Sms Predicted ATP-depe 92.1 0.81 1.8E-05 37.2 7.1 69 1-78 104-178 (456)
169 KOG2227 Pre-initiation complex 92.0 5.5 0.00012 33.1 11.6 131 1-138 186-340 (529)
170 cd01393 recA_like RecA is a b 92.0 0.97 2.1E-05 33.4 7.2 26 1-26 30-61 (226)
171 TIGR03346 chaperone_ClpB ATP-d 92.0 3.4 7.4E-05 37.2 11.6 67 67-135 265-348 (852)
172 PRK04296 thymidine kinase; Pro 92.0 0.2 4.4E-06 36.2 3.4 97 1-107 13-117 (190)
173 PF03969 AFG1_ATPase: AFG1-lik 91.9 0.51 1.1E-05 37.9 5.9 94 1-110 73-171 (362)
174 TIGR00763 lon ATP-dependent pr 91.8 0.93 2E-05 40.2 7.8 24 113-136 482-505 (775)
175 COG5635 Predicted NTPase (NACH 91.7 1.8 3.9E-05 38.8 9.6 181 1-186 233-447 (824)
176 PRK12678 transcription termina 91.5 0.4 8.7E-06 40.8 4.9 77 1-80 427-515 (672)
177 PHA00729 NTP-binding motif con 91.4 1.1 2.4E-05 33.5 6.7 15 1-15 28-42 (226)
178 PRK11034 clpA ATP-dependent Cl 91.3 0.61 1.3E-05 41.2 6.1 75 1-88 499-579 (758)
179 TIGR02858 spore_III_AA stage I 91.2 1.6 3.4E-05 33.6 7.7 98 1-108 122-231 (270)
180 PF00006 ATP-synt_ab: ATP synt 91.1 0.9 2E-05 33.7 6.1 73 1-81 26-118 (215)
181 PF02562 PhoH: PhoH-like prote 91.1 0.26 5.7E-06 36.2 3.2 101 1-105 30-155 (205)
182 PRK00409 recombination and DNA 91.1 2.5 5.4E-05 37.6 9.7 115 67-188 406-527 (782)
183 KOG1051 Chaperone HSP104 and r 91.1 1.3 2.9E-05 39.6 7.9 67 1-80 602-672 (898)
184 PRK05541 adenylylsulfate kinas 91.0 0.25 5.4E-06 35.1 3.0 25 1-25 18-42 (176)
185 cd00983 recA RecA is a bacter 91.0 0.16 3.4E-06 40.1 2.1 25 1-25 66-90 (325)
186 PRK05800 cobU adenosylcobinami 91.0 0.14 3E-06 36.5 1.7 113 1-137 12-145 (170)
187 TIGR01420 pilT_fam pilus retra 90.7 0.97 2.1E-05 36.0 6.3 94 1-107 133-231 (343)
188 cd01135 V_A-ATPase_B V/A-type 90.6 0.85 1.8E-05 35.1 5.6 77 1-81 80-179 (276)
189 TIGR01039 atpD ATP synthase, F 90.5 0.85 1.8E-05 37.7 5.9 76 1-80 154-249 (461)
190 PTZ00202 tuzin; Provisional 90.5 3.5 7.5E-05 34.3 9.2 121 1-133 297-431 (550)
191 PRK10787 DNA-binding ATP-depen 90.4 1.7 3.6E-05 38.7 8.0 24 113-136 483-506 (784)
192 PF13207 AAA_17: AAA domain; P 90.4 0.2 4.3E-06 33.0 1.9 14 1-14 10-23 (121)
193 COG1158 Rho Transcription term 90.4 0.67 1.4E-05 36.7 4.9 75 1-78 184-270 (422)
194 PRK12597 F0F1 ATP synthase sub 90.3 0.8 1.7E-05 38.0 5.6 75 1-79 154-248 (461)
195 COG0468 RecA RecA/RadA recombi 90.3 0.65 1.4E-05 35.8 4.8 72 1-78 71-151 (279)
196 TIGR01069 mutS2 MutS2 family p 90.3 0.67 1.4E-05 41.0 5.5 114 67-188 401-522 (771)
197 cd01394 radB RadB. The archaea 90.2 0.96 2.1E-05 33.3 5.6 25 1-25 30-54 (218)
198 PF00154 RecA: recA bacterial 90.1 0.48 1E-05 37.3 4.1 25 1-25 64-88 (322)
199 KOG0733 Nuclear AAA ATPase (VC 90.1 0.6 1.3E-05 39.9 4.7 18 1-18 234-251 (802)
200 PRK10865 protein disaggregatio 90.1 3.9 8.4E-05 36.9 10.1 16 1-16 210-225 (857)
201 TIGR02012 tigrfam_recA protein 90.1 0.18 3.9E-06 39.7 1.7 25 1-25 66-90 (321)
202 PRK09354 recA recombinase A; P 89.8 0.24 5.2E-06 39.4 2.2 25 1-25 71-95 (349)
203 PRK09280 F0F1 ATP synthase sub 89.8 0.91 2E-05 37.6 5.5 76 1-80 155-250 (463)
204 PLN03187 meiotic recombination 89.7 1.3 2.7E-05 35.4 6.2 43 1-49 137-185 (344)
205 cd01121 Sms Sms (bacterial rad 89.7 1.4 3E-05 35.6 6.4 70 1-78 93-168 (372)
206 KOG1514 Origin recognition com 89.6 14 0.00029 32.5 13.2 128 1-136 433-589 (767)
207 PF13671 AAA_33: AAA domain; P 89.4 0.33 7.1E-06 33.0 2.4 15 1-15 10-24 (143)
208 TIGR02238 recomb_DMC1 meiotic 89.4 1.6 3.5E-05 34.4 6.5 72 1-78 107-201 (313)
209 PRK04301 radA DNA repair and r 89.3 1.8 4E-05 34.0 6.9 26 1-26 113-144 (317)
210 PF01583 APS_kinase: Adenylyls 89.3 0.43 9.3E-06 33.5 2.9 25 1-25 13-37 (156)
211 PRK06762 hypothetical protein; 88.9 0.85 1.8E-05 32.0 4.3 14 1-14 13-26 (166)
212 COG0464 SpoVK ATPases of the A 88.5 6.1 0.00013 33.1 9.8 118 1-137 287-424 (494)
213 cd03221 ABCF_EF-3 ABCF_EF-3 E 88.4 2.1 4.5E-05 29.4 5.8 93 1-111 37-132 (144)
214 cd03247 ABCC_cytochrome_bd The 88.3 1.5 3.4E-05 31.1 5.4 58 61-120 109-169 (178)
215 cd01132 F1_ATPase_alpha F1 ATP 88.3 1.1 2.3E-05 34.6 4.7 21 66-86 159-180 (274)
216 PF13238 AAA_18: AAA domain; P 88.1 0.37 8E-06 31.9 1.9 14 1-14 9-22 (129)
217 TIGR00602 rad24 checkpoint pro 88.0 3.6 7.9E-05 35.7 8.2 48 116-163 267-319 (637)
218 smart00534 MUTSac ATPase domai 88.0 0.33 7.2E-06 34.9 1.8 45 67-112 77-128 (185)
219 PRK11034 clpA ATP-dependent Cl 88.0 2.7 5.9E-05 37.2 7.5 21 115-135 341-361 (758)
220 PRK07261 topology modulation p 87.9 1.5 3.3E-05 31.1 5.1 14 1-14 11-24 (171)
221 COG2607 Predicted ATPase (AAA+ 86.9 8.2 0.00018 29.4 8.4 20 1-20 96-115 (287)
222 PLN03186 DNA repair protein RA 86.8 2.4 5.1E-05 33.9 6.0 26 1-26 134-165 (342)
223 TIGR03324 alt_F1F0_F1_al alter 86.7 1.6 3.4E-05 36.6 5.1 73 1-79 173-265 (497)
224 cd03214 ABC_Iron-Siderophores_ 86.6 5.3 0.00011 28.4 7.4 107 1-111 36-163 (180)
225 PRK06217 hypothetical protein; 86.6 4 8.8E-05 29.1 6.7 15 1-15 12-26 (183)
226 PF08433 KTI12: Chromatin asso 86.5 0.18 3.9E-06 38.8 -0.4 16 1-16 12-27 (270)
227 CHL00095 clpC Clp protease ATP 86.4 4 8.6E-05 36.6 7.8 66 67-134 270-352 (821)
228 PF07726 AAA_3: ATPase family 86.3 0.33 7.1E-06 32.9 0.9 20 1-20 10-29 (131)
229 PF02572 CobA_CobO_BtuR: ATP:c 86.3 1 2.3E-05 32.1 3.4 51 57-107 84-140 (172)
230 PRK06002 fliI flagellum-specif 86.2 1.6 3.4E-05 36.1 4.8 72 1-80 176-266 (450)
231 cd03223 ABCD_peroxisomal_ALDP 86.1 2.7 5.9E-05 29.6 5.6 103 1-109 38-151 (166)
232 CHL00060 atpB ATP synthase CF1 85.8 3.2 7E-05 34.7 6.5 76 1-80 172-274 (494)
233 cd01122 GP4d_helicase GP4d_hel 85.7 9.7 0.00021 28.9 8.8 25 1-25 41-66 (271)
234 cd01129 PulE-GspE PulE/GspE Th 85.7 0.84 1.8E-05 35.0 2.9 77 1-87 91-168 (264)
235 KOG0730 AAA+-type ATPase [Post 85.4 4.5 9.7E-05 35.0 7.1 19 1-19 479-497 (693)
236 TIGR02236 recomb_radA DNA repa 85.3 3 6.4E-05 32.6 5.9 26 1-26 106-137 (310)
237 PF03205 MobB: Molybdopterin g 85.2 1.2 2.5E-05 30.6 3.2 25 1-25 11-36 (140)
238 cd03216 ABC_Carb_Monos_I This 85.2 1.5 3.2E-05 30.8 3.8 103 1-110 37-146 (163)
239 PTZ00035 Rad51 protein; Provis 85.1 4 8.8E-05 32.5 6.6 26 1-26 129-160 (337)
240 PRK05922 type III secretion sy 85.0 2.2 4.9E-05 35.1 5.2 15 1-15 168-182 (434)
241 PRK08149 ATP synthase SpaL; Va 85.0 1.8 4E-05 35.5 4.7 74 1-80 162-253 (428)
242 KOG2035 Replication factor C, 85.0 17 0.00036 28.4 10.0 118 68-187 126-259 (351)
243 PRK08972 fliI flagellum-specif 84.9 3.5 7.6E-05 34.0 6.2 74 1-80 173-264 (444)
244 TIGR03496 FliI_clade1 flagella 84.9 1.7 3.7E-05 35.6 4.5 15 66-80 225-239 (411)
245 cd02027 APSK Adenosine 5'-phos 84.8 7.1 0.00015 26.9 7.1 15 1-15 10-24 (149)
246 KOG2383 Predicted ATPase [Gene 84.8 1.3 2.8E-05 35.9 3.6 49 56-107 181-234 (467)
247 COG2884 FtsE Predicted ATPase 84.5 12 0.00026 27.5 8.0 53 59-112 146-203 (223)
248 PRK11823 DNA repair protein Ra 84.4 3.7 8E-05 34.0 6.3 70 1-78 91-166 (446)
249 PF00485 PRK: Phosphoribulokin 84.4 0.8 1.7E-05 33.1 2.2 17 1-17 10-26 (194)
250 KOG0744 AAA+-type ATPase [Post 84.2 4.9 0.00011 32.0 6.4 25 1-25 188-216 (423)
251 cd01136 ATPase_flagellum-secre 84.0 2.4 5.1E-05 33.6 4.8 74 1-80 80-171 (326)
252 COG4608 AppF ABC-type oligopep 83.9 2.9 6.2E-05 32.1 5.0 109 1-112 50-176 (268)
253 TIGR03305 alt_F1F0_F1_bet alte 83.7 5 0.00011 33.2 6.7 76 1-80 149-244 (449)
254 cd03281 ABC_MSH5_euk MutS5 hom 83.6 1.6 3.4E-05 32.3 3.5 47 66-112 106-160 (213)
255 PF13604 AAA_30: AAA domain; P 83.5 5.8 0.00013 28.8 6.4 32 70-103 95-128 (196)
256 TIGR02239 recomb_RAD51 DNA rep 83.5 4.1 8.8E-05 32.1 5.9 26 1-26 107-138 (316)
257 cd01134 V_A-ATPase_A V/A-type 83.4 4.6 0.0001 32.4 6.1 39 1-45 168-206 (369)
258 PF00448 SRP54: SRP54-type pro 83.4 9.8 0.00021 27.7 7.5 25 1-25 12-36 (196)
259 PF06144 DNA_pol3_delta: DNA p 83.3 13 0.00028 25.9 8.1 96 68-165 57-164 (172)
260 PTZ00301 uridine kinase; Provi 83.3 0.82 1.8E-05 33.7 1.9 18 1-18 14-31 (210)
261 TIGR00416 sms DNA repair prote 83.1 3.8 8.3E-05 34.0 5.9 25 1-25 105-129 (454)
262 cd02019 NK Nucleoside/nucleoti 83.1 0.98 2.1E-05 26.8 1.9 14 1-14 10-23 (69)
263 PLN00020 ribulose bisphosphate 83.0 1.7 3.7E-05 35.1 3.6 18 1-18 159-176 (413)
264 COG0125 Tmk Thymidylate kinase 82.9 2.8 6.1E-05 30.9 4.6 25 1-25 14-38 (208)
265 COG0467 RAD55 RecA-superfamily 82.9 3 6.5E-05 31.7 4.9 25 1-25 34-58 (260)
266 KOG0731 AAA+-type ATPase conta 82.8 28 0.00062 31.0 11.0 141 1-163 355-520 (774)
267 COG0572 Udk Uridine kinase [Nu 82.6 1.2 2.6E-05 33.0 2.5 20 1-20 19-38 (218)
268 PRK05917 DNA polymerase III su 82.5 21 0.00046 27.8 12.0 57 67-123 94-154 (290)
269 PF00910 RNA_helicase: RNA hel 82.5 0.8 1.7E-05 29.7 1.4 18 1-18 9-26 (107)
270 PRK09281 F0F1 ATP synthase sub 82.5 2.4 5.3E-05 35.6 4.5 14 67-80 253-266 (502)
271 PRK07413 hypothetical protein; 82.4 10 0.00023 30.7 7.8 51 58-108 114-170 (382)
272 TIGR03498 FliI_clade3 flagella 82.3 1.9 4.2E-05 35.3 3.8 74 1-80 151-242 (418)
273 CHL00059 atpA ATP synthase CF1 82.2 2.9 6.3E-05 34.9 4.8 15 66-80 231-245 (485)
274 cd03287 ABC_MSH3_euk MutS3 hom 82.1 1.4 3.1E-05 32.8 2.8 45 67-112 109-160 (222)
275 cd02028 UMPK_like Uridine mono 81.9 1.7 3.7E-05 31.1 3.0 16 1-16 10-25 (179)
276 PF02463 SMC_N: RecF/RecN/SMC 81.8 1.2 2.7E-05 32.7 2.4 45 68-112 158-205 (220)
277 PF01202 SKI: Shikimate kinase 81.5 1 2.2E-05 31.5 1.8 17 1-17 3-19 (158)
278 PRK08927 fliI flagellum-specif 81.5 6.5 0.00014 32.5 6.5 74 1-80 169-260 (442)
279 PRK09099 type III secretion sy 81.4 2.4 5.2E-05 35.0 4.1 74 1-80 174-265 (441)
280 COG1485 Predicted ATPase [Gene 81.3 4.9 0.00011 32.1 5.5 89 1-105 76-169 (367)
281 PF07931 CPT: Chloramphenicol 81.1 1.1 2.3E-05 32.1 1.8 15 1-15 12-26 (174)
282 PRK08233 hypothetical protein; 80.9 1.1 2.3E-05 31.8 1.7 15 1-15 14-28 (182)
283 PTZ00185 ATPase alpha subunit; 80.8 11 0.00023 32.1 7.5 15 66-80 287-301 (574)
284 cd01120 RecA-like_NTPases RecA 80.8 2.1 4.5E-05 29.3 3.2 25 1-25 10-34 (165)
285 TIGR01425 SRP54_euk signal rec 80.7 25 0.00055 29.1 9.6 17 1-17 111-127 (429)
286 PF07728 AAA_5: AAA domain (dy 80.6 1.2 2.5E-05 30.2 1.8 14 1-14 10-23 (139)
287 cd00227 CPT Chloramphenicol (C 80.6 1.3 2.9E-05 31.4 2.1 15 1-15 13-27 (175)
288 PF02367 UPF0079: Uncharacteri 80.5 1.2 2.6E-05 29.9 1.8 14 1-14 26-39 (123)
289 COG1763 MobB Molybdopterin-gua 80.4 1.2 2.6E-05 31.5 1.8 24 1-24 13-36 (161)
290 PF02223 Thymidylate_kin: Thym 80.3 3.4 7.4E-05 29.5 4.2 20 1-20 7-26 (186)
291 COG3172 NadR Predicted ATPase/ 80.2 1.4 3.1E-05 31.1 2.0 17 1-17 19-35 (187)
292 KOG0743 AAA+-type ATPase [Post 80.2 33 0.00071 28.5 14.8 85 97-186 338-431 (457)
293 PRK07132 DNA polymerase III su 80.1 27 0.00058 27.4 14.0 69 67-135 89-161 (299)
294 PRK10867 signal recognition pa 80.1 26 0.00056 29.1 9.6 17 1-17 111-127 (433)
295 COG1223 Predicted ATPase (AAA+ 80.0 11 0.00024 29.1 6.8 137 1-160 162-318 (368)
296 COG1428 Deoxynucleoside kinase 79.8 1.3 2.8E-05 32.7 1.8 15 1-15 15-29 (216)
297 PF13521 AAA_28: AAA domain; P 79.8 1.1 2.5E-05 31.2 1.6 13 1-13 10-22 (163)
298 PF08303 tRNA_lig_kinase: tRNA 79.7 1.3 2.7E-05 31.4 1.7 41 1-48 10-50 (168)
299 PRK09519 recA DNA recombinatio 79.7 3.3 7.2E-05 36.7 4.5 68 1-78 71-148 (790)
300 PRK06696 uridine kinase; Valid 79.6 1.6 3.5E-05 32.4 2.3 17 1-17 33-49 (223)
301 TIGR03497 FliI_clade2 flagella 79.6 6.6 0.00014 32.2 6.0 15 1-15 148-162 (413)
302 PRK07594 type III secretion sy 79.6 4.3 9.3E-05 33.5 4.9 15 66-80 243-257 (433)
303 COG2874 FlaH Predicted ATPases 79.3 8.7 0.00019 28.6 5.9 25 1-25 39-63 (235)
304 TIGR02902 spore_lonB ATP-depen 79.2 8.4 0.00018 32.8 6.7 23 115-137 255-277 (531)
305 COG0488 Uup ATPase components 79.2 9.6 0.00021 32.4 7.0 59 61-122 450-511 (530)
306 PRK06793 fliI flagellum-specif 79.2 12 0.00026 30.9 7.3 104 1-112 167-292 (432)
307 PRK08472 fliI flagellum-specif 79.2 4.5 9.8E-05 33.4 4.9 15 1-15 168-182 (434)
308 PF03266 NTPase_1: NTPase; In 79.2 1.3 2.9E-05 31.4 1.7 16 1-16 10-25 (168)
309 PRK05399 DNA mismatch repair p 79.2 1.1 2.4E-05 40.3 1.5 45 67-112 685-736 (854)
310 KOG0735 AAA+-type ATPase [Post 79.0 45 0.00097 29.8 10.7 139 1-163 712-872 (952)
311 cd00046 DEXDc DEAD-like helica 78.9 12 0.00027 24.3 6.5 25 1-25 11-37 (144)
312 TIGR00962 atpA proton transloc 78.8 3.7 8.1E-05 34.5 4.4 15 66-80 251-265 (501)
313 PRK03839 putative kinase; Prov 78.7 1.5 3.2E-05 31.2 1.9 15 1-15 11-25 (180)
314 COG0056 AtpA F0F1-type ATP syn 78.6 12 0.00025 31.1 6.9 108 1-112 173-304 (504)
315 TIGR01070 mutS1 DNA mismatch r 78.6 5.7 0.00012 35.7 5.8 45 67-112 670-721 (840)
316 PRK07721 fliI flagellum-specif 78.5 5.4 0.00012 33.0 5.2 23 1-24 169-191 (438)
317 KOG0736 Peroxisome assembly fa 78.3 5.1 0.00011 35.5 5.1 61 1-80 716-776 (953)
318 cd01672 TMPK Thymidine monopho 78.2 5.3 0.00012 28.5 4.7 16 1-16 11-26 (200)
319 PRK00131 aroK shikimate kinase 78.2 1.6 3.6E-05 30.5 2.0 15 1-15 15-29 (175)
320 PRK14493 putative bifunctional 78.1 2.6 5.5E-05 32.6 3.1 24 1-25 12-35 (274)
321 COG0055 AtpD F0F1-type ATP syn 78.1 5.1 0.00011 32.4 4.7 88 1-91 158-268 (468)
322 PRK05480 uridine/cytidine kina 78.0 1.6 3.4E-05 31.9 1.9 14 1-14 17-30 (209)
323 PRK14700 recombination factor 77.7 8.7 0.00019 30.0 5.8 69 93-161 4-81 (300)
324 cd00071 GMPK Guanosine monopho 77.2 1.7 3.7E-05 29.6 1.8 18 1-18 10-27 (137)
325 COG1618 Predicted nucleotide k 77.2 2.8 6.1E-05 29.7 2.8 28 1-28 16-45 (179)
326 PRK13975 thymidylate kinase; P 77.1 1.8 4E-05 31.1 2.0 16 1-16 13-28 (196)
327 TIGR00959 ffh signal recogniti 77.0 35 0.00075 28.3 9.4 15 1-15 110-124 (428)
328 KOG0729 26S proteasome regulat 76.9 5 0.00011 31.0 4.2 88 1-108 222-328 (435)
329 TIGR00150 HI0065_YjeE ATPase, 76.8 1.8 3.9E-05 29.5 1.7 14 1-14 33-46 (133)
330 TIGR01040 V-ATPase_V1_B V-type 76.8 12 0.00027 31.1 6.8 15 1-15 152-166 (466)
331 TIGR00455 apsK adenylylsulfate 76.7 12 0.00025 26.7 6.1 16 1-16 29-44 (184)
332 cd01124 KaiC KaiC is a circadi 76.5 3.2 6.9E-05 29.5 3.1 25 1-25 10-34 (187)
333 PF08477 Miro: Miro-like prote 76.4 1.9 4.1E-05 28.1 1.8 13 1-13 10-22 (119)
334 COG1157 FliI Flagellar biosynt 76.3 7.3 0.00016 31.9 5.2 72 1-78 174-263 (441)
335 TIGR01026 fliI_yscN ATPase Fli 76.3 7.8 0.00017 32.1 5.6 15 1-15 174-188 (440)
336 cd02024 NRK1 Nicotinamide ribo 76.1 1.8 4E-05 31.3 1.7 14 1-14 10-23 (187)
337 PRK13343 F0F1 ATP synthase sub 76.1 4.6 9.9E-05 34.0 4.2 15 66-80 252-266 (502)
338 PRK00889 adenylylsulfate kinas 76.0 3 6.6E-05 29.4 2.8 16 1-16 15-30 (175)
339 COG4088 Predicted nucleotide k 75.6 1.9 4E-05 32.0 1.6 17 1-17 12-28 (261)
340 cd02025 PanK Pantothenate kina 75.5 2.1 4.5E-05 31.8 1.9 15 1-15 10-24 (220)
341 PF14532 Sigma54_activ_2: Sigm 75.5 2.5 5.4E-05 28.7 2.2 39 68-106 69-110 (138)
342 PRK04040 adenylate kinase; Pro 75.4 2.6 5.7E-05 30.5 2.4 15 1-15 13-27 (188)
343 TIGR02546 III_secr_ATP type II 75.3 8.8 0.00019 31.6 5.6 15 1-15 156-170 (422)
344 PRK03846 adenylylsulfate kinas 75.3 3.4 7.4E-05 30.0 3.0 25 1-25 35-59 (198)
345 TIGR01041 ATP_syn_B_arch ATP s 75.3 17 0.00036 30.4 7.2 75 1-79 152-249 (458)
346 PF00625 Guanylate_kin: Guanyl 75.0 3.3 7.2E-05 29.6 2.9 25 1-25 13-37 (183)
347 PRK10646 ADP-binding protein; 75.0 2.1 4.5E-05 30.0 1.7 14 1-14 39-52 (153)
348 PF00488 MutS_V: MutS domain V 75.0 21 0.00046 26.8 7.3 45 67-112 121-172 (235)
349 PRK00625 shikimate kinase; Pro 74.9 2.3 5E-05 30.3 2.0 15 1-15 11-25 (173)
350 PRK13947 shikimate kinase; Pro 74.9 2.3 4.9E-05 29.8 2.0 16 1-16 12-27 (171)
351 PRK05688 fliI flagellum-specif 74.7 4.6 0.0001 33.5 3.9 15 66-80 256-270 (451)
352 COG0529 CysC Adenylylsulfate k 74.7 3.5 7.6E-05 29.7 2.8 24 1-24 34-57 (197)
353 PRK07165 F0F1 ATP synthase sub 74.6 5.8 0.00013 33.4 4.4 72 1-80 154-245 (507)
354 cd02021 GntK Gluconate kinase 74.3 2.2 4.8E-05 29.2 1.8 14 1-14 10-23 (150)
355 PRK07414 cob(I)yrinic acid a,c 74.1 6.4 0.00014 28.3 4.0 52 58-109 104-161 (178)
356 PRK06547 hypothetical protein; 74.1 2.6 5.6E-05 30.0 2.1 14 1-14 26-39 (172)
357 KOG0094 GTPase Rab6/YPT6/Ryh1, 74.0 11 0.00024 27.6 5.2 29 1-29 33-62 (221)
358 PRK07667 uridine kinase; Provi 74.0 4.1 8.9E-05 29.5 3.2 16 1-16 28-43 (193)
359 COG3265 GntK Gluconate kinase 73.9 2.6 5.6E-05 29.4 1.9 18 1-18 6-23 (161)
360 PRK06820 type III secretion sy 73.7 12 0.00025 31.1 5.9 15 66-80 251-265 (440)
361 PRK06936 type III secretion sy 73.6 5.9 0.00013 32.7 4.2 74 1-80 173-264 (439)
362 cd03282 ABC_MSH4_euk MutS4 hom 73.6 4.7 0.0001 29.6 3.4 45 66-112 106-157 (204)
363 PRK12724 flagellar biosynthesi 73.5 51 0.0011 27.3 9.6 14 1-14 234-247 (432)
364 cd02023 UMPK Uridine monophosp 73.5 2.3 5E-05 30.8 1.7 14 1-14 10-23 (198)
365 TIGR01313 therm_gnt_kin carboh 73.4 2.3 5E-05 29.6 1.7 14 1-14 9-22 (163)
366 TIGR00235 udk uridine kinase. 73.3 2.3 5E-05 31.1 1.7 15 1-15 17-31 (207)
367 COG0378 HypB Ni2+-binding GTPa 73.2 3.2 7E-05 30.3 2.3 22 1-22 24-45 (202)
368 PRK05973 replicative DNA helic 73.0 4.3 9.4E-05 30.6 3.1 25 1-25 75-99 (237)
369 KOG3308 Uncharacterized protei 72.8 2.5 5.3E-05 31.1 1.6 12 1-12 15-26 (225)
370 TIGR00176 mobB molybdopterin-g 72.6 2.8 6.1E-05 29.3 1.9 23 1-23 10-33 (155)
371 TIGR03574 selen_PSTK L-seryl-t 72.5 3.9 8.4E-05 30.8 2.8 17 1-17 10-26 (249)
372 PRK04196 V-type ATP synthase s 72.4 7.5 0.00016 32.4 4.6 74 1-79 154-251 (460)
373 TIGR00382 clpX endopeptidase C 72.3 6.3 0.00014 32.4 4.1 18 1-18 127-144 (413)
374 PF00437 T2SE: Type II/IV secr 72.1 4 8.6E-05 31.1 2.8 89 1-103 138-228 (270)
375 KOG0730 AAA+-type ATPase [Post 72.0 27 0.0006 30.4 7.8 60 1-79 229-289 (693)
376 PRK07960 fliI flagellum-specif 72.0 4.2 9E-05 33.7 3.0 15 66-80 263-277 (455)
377 PRK10751 molybdopterin-guanine 71.9 2.8 6.1E-05 30.0 1.8 16 1-16 17-32 (173)
378 PRK13833 conjugal transfer pro 71.9 7.9 0.00017 30.7 4.4 30 57-86 204-233 (323)
379 cd02020 CMPK Cytidine monophos 71.8 3.1 6.7E-05 28.1 2.0 14 1-14 10-23 (147)
380 TIGR02788 VirB11 P-type DNA tr 71.5 7.2 0.00016 30.6 4.2 81 1-86 155-236 (308)
381 PF03796 DnaB_C: DnaB-like hel 71.5 11 0.00025 28.4 5.2 44 1-51 30-74 (259)
382 PRK13949 shikimate kinase; Pro 71.3 3.2 6.8E-05 29.4 2.0 15 1-15 12-26 (169)
383 COG3854 SpoIIIAA ncharacterize 71.2 25 0.00054 26.8 6.6 35 68-105 218-252 (308)
384 COG0541 Ffh Signal recognition 70.8 60 0.0013 27.0 10.3 16 1-16 111-126 (451)
385 cd01983 Fer4_NifH The Fer4_Nif 70.7 5.3 0.00012 24.4 2.8 16 1-16 10-25 (99)
386 TIGR01360 aden_kin_iso1 adenyl 70.7 3.1 6.8E-05 29.5 1.9 14 1-14 14-27 (188)
387 PRK04192 V-type ATP synthase s 70.6 15 0.00033 31.5 6.0 40 1-46 238-277 (586)
388 PRK13973 thymidylate kinase; P 70.3 11 0.00025 27.6 4.8 17 1-17 14-30 (213)
389 TIGR03881 KaiC_arch_4 KaiC dom 70.3 5.4 0.00012 29.5 3.1 25 1-25 31-55 (229)
390 PRK13976 thymidylate kinase; P 70.2 9.6 0.00021 28.1 4.4 17 1-17 11-27 (209)
391 PRK11545 gntK gluconate kinase 70.1 3.2 6.9E-05 29.2 1.8 14 1-14 6-19 (163)
392 COG0249 MutS Mismatch repair A 70.0 3.4 7.3E-05 37.1 2.2 98 67-171 685-792 (843)
393 PRK14490 putative bifunctional 69.9 3.9 8.5E-05 32.9 2.4 19 1-19 16-34 (369)
394 cd00464 SK Shikimate kinase (S 69.9 3.6 7.7E-05 28.1 2.0 14 1-14 10-23 (154)
395 TIGR00041 DTMP_kinase thymidyl 69.6 12 0.00025 26.8 4.7 16 1-16 14-29 (195)
396 PRK13948 shikimate kinase; Pro 69.5 3.5 7.6E-05 29.7 1.9 15 1-15 21-35 (182)
397 PRK02118 V-type ATP synthase s 69.2 26 0.00057 29.0 6.9 74 1-80 151-243 (436)
398 TIGR02782 TrbB_P P-type conjug 69.1 8.3 0.00018 30.1 4.0 30 57-86 193-222 (299)
399 PRK14722 flhF flagellar biosyn 69.0 26 0.00055 28.5 6.8 25 1-25 148-174 (374)
400 KOG2228 Origin recognition com 68.9 60 0.0013 26.2 9.0 135 1-136 60-219 (408)
401 PRK13765 ATP-dependent proteas 68.8 5.5 0.00012 34.6 3.2 42 1-48 61-103 (637)
402 KOG0736 Peroxisome assembly fa 68.7 51 0.0011 29.6 8.7 23 115-137 555-577 (953)
403 PF00693 Herpes_TK: Thymidine 68.5 5.2 0.00011 30.9 2.7 17 1-17 5-21 (281)
404 TIGR01817 nifA Nif-specific re 68.4 45 0.00098 28.3 8.5 14 1-14 230-243 (534)
405 TIGR03877 thermo_KaiC_1 KaiC d 68.4 14 0.0003 27.6 5.0 25 1-25 32-56 (237)
406 COG0305 DnaB Replicative DNA h 68.3 20 0.00043 29.7 6.1 73 1-82 207-291 (435)
407 PF07724 AAA_2: AAA domain (Cd 68.3 8.6 0.00019 27.3 3.7 29 1-30 14-43 (171)
408 cd03116 MobB Molybdenum is an 68.1 6.2 0.00013 27.7 2.9 17 1-17 12-28 (159)
409 PRK05057 aroK shikimate kinase 68.0 3.8 8.3E-05 29.1 1.8 15 1-15 15-29 (172)
410 COG0703 AroK Shikimate kinase 67.9 4.3 9.3E-05 29.0 2.0 18 1-18 13-30 (172)
411 TIGR02322 phosphon_PhnN phosph 67.8 3.7 7.9E-05 29.1 1.7 15 1-15 12-26 (179)
412 COG0802 Predicted ATPase or ki 67.8 3.8 8.3E-05 28.5 1.7 13 1-13 36-48 (149)
413 TIGR00347 bioD dethiobiotin sy 67.7 6.2 0.00013 27.5 2.8 24 1-24 9-32 (166)
414 PRK06761 hypothetical protein; 67.7 6.2 0.00013 30.6 3.0 17 1-17 14-30 (282)
415 PF07693 KAP_NTPase: KAP famil 67.7 11 0.00025 29.3 4.6 67 67-135 171-262 (325)
416 COG0563 Adk Adenylate kinase a 67.7 3.9 8.5E-05 29.3 1.8 81 1-87 11-97 (178)
417 PF01656 CbiA: CobQ/CobB/MinD/ 67.4 6.3 0.00014 28.0 2.9 25 1-25 10-34 (195)
418 PRK06067 flagellar accessory p 67.4 15 0.00033 27.3 5.0 25 1-25 36-60 (234)
419 PRK07933 thymidylate kinase; V 67.0 4.2 9E-05 30.0 1.9 17 1-17 11-27 (213)
420 COG2109 BtuR ATP:corrinoid ade 66.9 9.3 0.0002 27.8 3.5 49 59-107 112-166 (198)
421 PF10662 PduV-EutP: Ethanolami 66.9 3.5 7.6E-05 28.5 1.4 13 1-13 12-24 (143)
422 TIGR01042 V-ATPase_V1_A V-type 66.7 23 0.00051 30.4 6.3 38 1-44 237-274 (591)
423 cd00984 DnaB_C DnaB helicase C 66.7 17 0.00036 27.1 5.2 25 1-25 24-49 (242)
424 TIGR01359 UMP_CMP_kin_fam UMP- 66.6 4.2 9.2E-05 28.8 1.9 14 1-14 10-23 (183)
425 PRK04182 cytidylate kinase; Pr 66.6 4.3 9.4E-05 28.5 1.9 15 1-15 11-25 (180)
426 TIGR00764 lon_rel lon-related 66.5 11 0.00024 32.7 4.6 27 1-27 48-75 (608)
427 cd03109 DTBS Dethiobiotin synt 66.5 7.7 0.00017 26.3 3.0 25 1-25 10-34 (134)
428 cd02030 NDUO42 NADH:Ubiquinone 66.2 4.7 0.0001 29.8 2.1 15 1-15 10-24 (219)
429 TIGR03878 thermo_KaiC_2 KaiC d 66.2 7.5 0.00016 29.6 3.2 26 1-26 47-72 (259)
430 COG2255 RuvB Holliday junction 66.2 63 0.0014 25.4 9.5 156 1-173 63-229 (332)
431 PRK13695 putative NTPase; Prov 66.1 6.7 0.00015 27.7 2.8 15 1-15 11-25 (174)
432 TIGR02524 dot_icm_DotB Dot/Icm 65.6 8.8 0.00019 30.9 3.6 30 57-86 201-230 (358)
433 PRK08533 flagellar accessory p 65.6 7.7 0.00017 29.0 3.1 24 1-25 35-59 (230)
434 PHA02530 pseT polynucleotide k 65.6 4.3 9.2E-05 31.4 1.8 14 1-14 13-26 (300)
435 COG1124 DppF ABC-type dipeptid 65.5 5.3 0.00011 30.2 2.2 51 60-112 151-208 (252)
436 PRK03731 aroL shikimate kinase 65.5 4.8 0.0001 28.2 1.9 15 1-15 13-27 (171)
437 PRK13946 shikimate kinase; Pro 65.5 4.9 0.00011 28.8 2.0 15 1-15 21-35 (184)
438 PRK15429 formate hydrogenlyase 65.4 27 0.00058 30.7 6.8 14 1-14 410-423 (686)
439 PLN02924 thymidylate kinase 65.3 16 0.00034 27.2 4.7 17 1-17 27-43 (220)
440 PRK07196 fliI flagellum-specif 65.3 18 0.00038 30.0 5.3 15 66-80 243-257 (434)
441 CHL00206 ycf2 Ycf2; Provisiona 64.9 64 0.0014 32.4 9.2 17 1-17 1641-1657(2281)
442 cd03284 ABC_MutS1 MutS1 homolo 64.9 7.9 0.00017 28.6 3.0 45 67-112 108-159 (216)
443 PRK00698 tmk thymidylate kinas 64.8 16 0.00035 26.3 4.6 16 1-16 14-29 (205)
444 PRK00771 signal recognition pa 64.7 23 0.0005 29.4 5.9 17 1-17 106-122 (437)
445 PRK09270 nucleoside triphospha 64.5 4.9 0.00011 29.9 1.9 17 1-17 44-60 (229)
446 TIGR01448 recD_rel helicase, p 63.8 70 0.0015 28.5 9.0 31 69-102 417-449 (720)
447 cd02034 CooC The accessory pro 63.7 16 0.00034 24.1 4.0 25 1-25 10-34 (116)
448 TIGR02525 plasmid_TraJ plasmid 63.6 17 0.00037 29.5 4.9 82 1-87 160-244 (372)
449 PRK14530 adenylate kinase; Pro 63.5 5.3 0.00011 29.4 1.9 14 1-14 14-27 (215)
450 cd04138 H_N_K_Ras_like H-Ras/N 63.4 4.9 0.00011 27.4 1.6 12 1-12 12-23 (162)
451 cd02036 MinD Bacterial cell di 63.4 9.1 0.0002 26.8 3.1 25 1-25 11-35 (179)
452 TIGR03263 guanyl_kin guanylate 63.4 4.4 9.4E-05 28.7 1.4 14 1-14 12-25 (180)
453 cd03285 ABC_MSH2_euk MutS2 hom 63.1 8.5 0.00018 28.6 2.9 45 67-112 108-159 (222)
454 cd01673 dNK Deoxyribonucleosid 63.1 5.4 0.00012 28.6 1.8 13 1-13 10-22 (193)
455 COG1102 Cmk Cytidylate kinase 62.9 5.5 0.00012 28.3 1.7 15 1-15 11-25 (179)
456 PRK10463 hydrogenase nickel in 62.8 8 0.00017 30.1 2.8 20 1-20 115-134 (290)
457 smart00763 AAA_PrkA PrkA AAA d 62.6 7.8 0.00017 31.2 2.7 16 1-16 89-104 (361)
458 smart00173 RAS Ras subfamily o 62.5 5.2 0.00011 27.5 1.6 12 1-12 11-22 (164)
459 cd04108 Rab36_Rab34 Rab34/Rab3 62.5 5.5 0.00012 27.9 1.8 18 1-18 11-29 (170)
460 cd04119 RJL RJL (RabJ-Like) su 62.3 5.1 0.00011 27.5 1.6 13 1-13 11-23 (168)
461 PRK14532 adenylate kinase; Pro 62.1 5.7 0.00012 28.4 1.8 14 1-14 11-24 (188)
462 PRK13894 conjugal transfer ATP 61.9 12 0.00025 29.7 3.6 30 57-86 208-237 (319)
463 PRK10078 ribose 1,5-bisphospho 61.6 4.5 9.8E-05 29.0 1.2 15 1-15 13-27 (186)
464 cd04120 Rab12 Rab12 subfamily. 61.5 7.3 0.00016 28.5 2.3 19 1-19 11-30 (202)
465 cd01428 ADK Adenylate kinase ( 61.4 6 0.00013 28.2 1.8 14 1-14 10-23 (194)
466 PF06745 KaiC: KaiC; InterPro 61.3 14 0.00031 27.2 3.9 25 1-25 30-55 (226)
467 cd00880 Era_like Era (E. coli 60.9 5 0.00011 26.9 1.3 13 1-13 7-19 (163)
468 PHA02518 ParA-like protein; Pr 60.5 11 0.00023 27.3 3.1 25 1-25 12-36 (211)
469 cd04136 Rap_like Rap-like subf 60.3 5.9 0.00013 27.1 1.6 12 1-12 12-23 (163)
470 TIGR02173 cyt_kin_arch cytidyl 60.1 6.6 0.00014 27.3 1.8 14 1-14 11-24 (171)
471 KOG1969 DNA replication checkp 60.0 27 0.00058 31.0 5.6 14 1-14 337-350 (877)
472 PF06068 TIP49: TIP49 C-termin 59.7 29 0.00064 28.2 5.5 45 1-47 61-105 (398)
473 cd04124 RabL2 RabL2 subfamily. 59.7 6.2 0.00013 27.3 1.6 12 1-12 11-22 (161)
474 PRK14494 putative molybdopteri 59.7 6.6 0.00014 29.5 1.8 17 1-17 12-28 (229)
475 PRK00300 gmk guanylate kinase; 59.5 6.3 0.00014 28.5 1.7 15 1-15 16-30 (205)
476 PF00406 ADK: Adenylate kinase 59.4 7.4 0.00016 26.7 1.9 14 1-14 7-20 (151)
477 TIGR01128 holA DNA polymerase 59.3 79 0.0017 24.2 8.4 70 67-136 45-124 (302)
478 cd00882 Ras_like_GTPase Ras-li 59.2 6.2 0.00014 25.9 1.5 13 1-13 7-19 (157)
479 COG0488 Uup ATPase components 59.2 45 0.00098 28.5 6.8 53 58-112 161-216 (530)
480 cd03115 SRP The signal recogni 59.1 12 0.00026 26.2 3.1 17 1-17 11-27 (173)
481 COG0714 MoxR-like ATPases [Gen 59.0 7.9 0.00017 30.6 2.3 23 1-23 54-76 (329)
482 PRK14723 flhF flagellar biosyn 58.7 1E+02 0.0022 27.7 9.0 36 67-102 294-331 (767)
483 cd02042 ParA ParA and ParB of 58.7 14 0.0003 23.4 3.0 16 1-16 11-26 (104)
484 PF00071 Ras: Ras family; Int 58.7 7 0.00015 26.8 1.8 13 1-13 10-22 (162)
485 COG1341 Predicted GTPase or GT 58.6 11 0.00024 30.6 3.0 25 1-25 84-108 (398)
486 COG2274 SunT ABC-type bacterio 58.5 24 0.00052 31.3 5.2 20 60-79 619-638 (709)
487 PRK08099 bifunctional DNA-bind 58.4 6.5 0.00014 32.1 1.7 14 1-14 230-243 (399)
488 PRK04328 hypothetical protein; 58.3 12 0.00027 28.3 3.1 25 1-25 34-58 (249)
489 TIGR00554 panK_bact pantothena 58.3 6.7 0.00015 30.5 1.7 15 1-15 73-87 (290)
490 PRK11889 flhF flagellar biosyn 58.1 1.1E+02 0.0023 25.5 10.5 16 1-16 252-267 (436)
491 TIGR00101 ureG urease accessor 58.1 10 0.00022 27.7 2.6 23 1-24 12-34 (199)
492 cd04113 Rab4 Rab4 subfamily. 58.1 6.7 0.00014 26.9 1.6 12 1-12 11-22 (161)
493 cd04128 Spg1 Spg1p. Spg1p (se 58.1 7.2 0.00016 27.8 1.8 23 143-165 151-173 (182)
494 cd01862 Rab7 Rab7 subfamily. 57.9 6.2 0.00013 27.3 1.4 13 1-13 11-23 (172)
495 PF02492 cobW: CobW/HypB/UreG, 57.8 14 0.00031 26.2 3.3 12 1-12 11-22 (178)
496 PF12775 AAA_7: P-loop contain 57.8 9.4 0.0002 29.4 2.4 15 1-15 44-58 (272)
497 TIGR03499 FlhF flagellar biosy 57.7 52 0.0011 25.4 6.5 25 1-25 205-231 (282)
498 TIGR01650 PD_CobS cobaltochela 57.4 7.9 0.00017 30.7 2.0 18 1-18 75-92 (327)
499 PRK14527 adenylate kinase; Pro 57.3 7.9 0.00017 27.8 1.9 14 1-14 17-30 (191)
500 PRK04220 2-phosphoglycerate ki 57.2 7.7 0.00017 30.4 1.9 14 1-14 103-116 (301)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-33 Score=237.45 Aligned_cols=184 Identities=24% Similarity=0.336 Sum_probs=164.8
Q ss_pred CchhHHHHHHHHH---hhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-c-----CchHHHHhhcCCceEE
Q 039644 1 IGKTAIARAIFDK---ISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-M-----PYIDLNFRRLSRMKVL 71 (192)
Q Consensus 1 iGKTtLa~~~~~~---~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-----~~~~~l~~~l~~~~~L 71 (192)
+||||||++++++ ++.+|+.++|+.+..+ ++..+++.+++..++...+. . +....+.+.|+.+|||
T Consensus 190 vGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~-----f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfl 264 (889)
T KOG4658|consen 190 VGKTTLARQIFNKFDEVGNHFDGVIWVVVSKE-----FTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFL 264 (889)
T ss_pred ccHHHHHHHHhcccchhcccCceEEEEEEccc-----ccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceE
Confidence 6999999999993 7899999999995443 89999999999988764443 1 2778899999999999
Q ss_pred EEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHhh-cCCCceEecCCCCHHHHHHHHHHhhcCCC-CCCccHHHH
Q 039644 72 IVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRN-WGVSKIYEMEALEYHHALELFSQHAFKRN-HPDVGYEKL 149 (192)
Q Consensus 72 lVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~-~~~~~~~~~ 149 (192)
|||||+|+..+|+.+...+|...+||+|++|||++.++.. ++....++++.|+.+|||.||.+.++... ...+.+.++
T Consensus 265 lvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~l 344 (889)
T KOG4658|consen 265 LVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEEL 344 (889)
T ss_pred EEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHH
Confidence 9999999999999999999988889999999999999999 78888999999999999999999998764 445668999
Q ss_pred HHHHHHHhCCCchHHHHHHHHhccCC-HHHHHHHHHHHHhc
Q 039644 150 SSNVTKYAQGIPLALKVLSCFLHKRE-KEVWESAIDKLQRI 189 (192)
Q Consensus 150 ~~~i~~~~~g~Plai~~~~~~l~~~~-~~~w~~~l~~l~~~ 189 (192)
+++++++|+|+|||+.++|+.|+.+. +.+|+++...+...
T Consensus 345 ak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~ 385 (889)
T KOG4658|consen 345 AKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS 385 (889)
T ss_pred HHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence 99999999999999999999999987 88999999988654
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.5e-33 Score=215.83 Aligned_cols=185 Identities=29% Similarity=0.448 Sum_probs=144.2
Q ss_pred CchhHHHHHHHHH--hhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-------cCchHHHHhhcCCceEE
Q 039644 1 IGKTAIARAIFDK--ISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-------MPYIDLNFRRLSRMKVL 71 (192)
Q Consensus 1 iGKTtLa~~~~~~--~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~l~~~l~~~~~L 71 (192)
+||||||.+++++ ++.+|+.++|+...+. .+...++..++.++...... .+....+.+.+.++++|
T Consensus 30 ~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~L 104 (287)
T PF00931_consen 30 IGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCL 104 (287)
T ss_dssp SSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEE
T ss_pred CCcceeeeecccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccchhhhccccce
Confidence 6999999999997 8999999999985444 56688999999999876321 22788899999999999
Q ss_pred EEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHhhcCC-CceEecCCCCHHHHHHHHHHhhcCCC-CCCccHHHH
Q 039644 72 IVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGV-SKIYEMEALEYHHALELFSQHAFKRN-HPDVGYEKL 149 (192)
Q Consensus 72 lVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~-~~~~~l~~l~~~ea~~lf~~~~~~~~-~~~~~~~~~ 149 (192)
|||||+|+...|+.+...++....+++||+|||+..++...+. ...+++++|+.++|++||.+.++... .+.....+.
T Consensus 105 lVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~ 184 (287)
T PF00931_consen 105 LVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDL 184 (287)
T ss_dssp EEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTH
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998888777776789999999999988776643 67899999999999999999987655 334556678
Q ss_pred HHHHHHHhCCCchHHHHHHHHhccCC-HHHHHHHHHHHHhcC
Q 039644 150 SSNVTKYAQGIPLALKVLSCFLHKRE-KEVWESAIDKLQRIL 190 (192)
Q Consensus 150 ~~~i~~~~~g~Plai~~~~~~l~~~~-~~~w~~~l~~l~~~~ 190 (192)
+++|++.|+|+||||.++|++|+.+. ..+|+++++++....
T Consensus 185 ~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~ 226 (287)
T PF00931_consen 185 AKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSL 226 (287)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999997654 889999998887543
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=1.3e-28 Score=218.75 Aligned_cols=190 Identities=36% Similarity=0.586 Sum_probs=155.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeec--ccc---ccC-----CCChHHHHHHHHHHHhcCCCC-cCchHHHHhhcCCce
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENV--REE---SQR-----PGGLACLRQKLLSNILKDKNV-MPYIDLNFRRLSRMK 69 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~--~~~---~~~-----~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~ 69 (192)
+||||||+.+|+++..+|++.+|+... +.. ... ......+...++..+...... ......+++.+.+++
T Consensus 218 iGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~kr 297 (1153)
T PLN03210 218 IGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRK 297 (1153)
T ss_pred CchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCe
Confidence 799999999999999999999888531 110 000 001233455556665544332 334467888899999
Q ss_pred EEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHH
Q 039644 70 VLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKL 149 (192)
Q Consensus 70 ~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~ 149 (192)
+||||||||+..+|+.+.....+.++|++||||||++.++...+..+.++++.++.++|++||.++||....+++.+.++
T Consensus 298 vLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l 377 (1153)
T PLN03210 298 VLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMEL 377 (1153)
T ss_pred EEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 99999999999999999876666788999999999999988777778999999999999999999999876666778899
Q ss_pred HHHHHHHhCCCchHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 039644 150 SSNVTKYAQGIPLALKVLSCFLHKREKEVWESAIDKLQRIL 190 (192)
Q Consensus 150 ~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~ 190 (192)
+.+|++.|+|+|||++++|++|++++..+|+.++++++..+
T Consensus 378 ~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~ 418 (1153)
T PLN03210 378 ASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL 418 (1153)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc
Confidence 99999999999999999999999988999999999998754
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.05 E-value=8.3e-08 Score=73.30 Aligned_cols=180 Identities=14% Similarity=0.158 Sum_probs=106.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcC---chHHHH----hhc-CCceEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMP---YIDLNF----RRL-SRMKVLI 72 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~l~----~~l-~~~~~Ll 72 (192)
+|||||++.++..+...=...+|+. ... .+..+++..+...++....... ....+. ... .+++.++
T Consensus 54 ~GKTtl~~~l~~~l~~~~~~~~~~~-~~~-----~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vl 127 (269)
T TIGR03015 54 AGKTTLIRNLLKRLDQERVVAAKLV-NTR-----VDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALL 127 (269)
T ss_pred CCHHHHHHHHHHhcCCCCeEEeeee-CCC-----CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 6999999999998653211223332 111 4667888888877754332211 222222 222 5678999
Q ss_pred EEeCCCCch--hHHHhhc---cCCCCCCCceEEEEecchhHHhhc----------CCCceEecCCCCHHHHHHHHHHhhc
Q 039644 73 VFDDVTCFS--QLESLMG---SLDWLTPVSRIILTTRNKQVLRNW----------GVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 73 VlDdv~~~~--~~~~l~~---~~~~~~~~~~iivTtR~~~~~~~~----------~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
|+|+++... .++.+.. ..........|++|.... ..... .....+.+++++.+|..+++.....
T Consensus 128 iiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 128 VVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred EEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHH
Confidence 999998754 3444332 111112233455554332 21111 1134678999999999998887654
Q ss_pred CCC--CCCccHHHHHHHHHHHhCCCchHHHHHHHHhc------cCC---HHHHHHHHHHHH
Q 039644 138 KRN--HPDVGYEKLSSNVTKYAQGIPLALKVLSCFLH------KRE---KEVWESAIDKLQ 187 (192)
Q Consensus 138 ~~~--~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~------~~~---~~~w~~~l~~l~ 187 (192)
... ....-..+..+.|.+.++|.|..|..++..+- +.. .+.++.++.++.
T Consensus 207 ~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 207 RAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred HcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 322 11234557888999999999999999887661 221 566666665543
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=1.8e-08 Score=88.96 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=99.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-----c--------C----chHHHHh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-----M--------P----YIDLNFR 63 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~--------~----~~~~l~~ 63 (192)
.||||++.++.... +.++|++ +.+.+ .+...+...++..+....+. . . ....+..
T Consensus 43 ~GKTtl~~~~~~~~----~~~~w~~-l~~~d---~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (903)
T PRK04841 43 YGKTTLISQWAAGK----NNLGWYS-LDESD---NQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFI 114 (903)
T ss_pred CCHHHHHHHHHHhC----CCeEEEe-cCccc---CCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHH
Confidence 49999999988643 3689997 43322 34556666666666421110 0 0 2223333
Q ss_pred hcC--CceEEEEEeCCCCchh--H-HHhhccCCCCCCCceEEEEecchhHHhhc---CCCceEecC----CCCHHHHHHH
Q 039644 64 RLS--RMKVLIVFDDVTCFSQ--L-ESLMGSLDWLTPVSRIILTTRNKQVLRNW---GVSKIYEME----ALEYHHALEL 131 (192)
Q Consensus 64 ~l~--~~~~LlVlDdv~~~~~--~-~~l~~~~~~~~~~~~iivTtR~~~~~~~~---~~~~~~~l~----~l~~~ea~~l 131 (192)
.+. +.+.+|||||+..... . +.+..-++...++.++|||||........ -......+. +|+.+|+.++
T Consensus 115 ~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~l 194 (903)
T PRK04841 115 ELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQF 194 (903)
T ss_pred HHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHH
Confidence 332 6799999999986431 2 22222233334567899999984322111 112344555 8999999999
Q ss_pred HHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhcc
Q 039644 132 FSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCFLHK 173 (192)
Q Consensus 132 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~ 173 (192)
|....+.. -..+.+..+.+.|+|+|+++..++..++.
T Consensus 195 l~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 195 FDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred HHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 97765322 13455678999999999999998876643
No 6
>PF05729 NACHT: NACHT domain
Probab=98.95 E-value=1.4e-08 Score=71.60 Aligned_cols=132 Identities=20% Similarity=0.328 Sum_probs=77.1
Q ss_pred CchhHHHHHHHHHhhCC------CcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhc-CCceEEEE
Q 039644 1 IGKTAIARAIFDKISGD------FECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRL-SRMKVLIV 73 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~------F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlV 73 (192)
+||||++..++.+.... +...+|+. .+..... .....+...+..+....... ....+...+ ...+++||
T Consensus 11 ~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~lli 86 (166)
T PF05729_consen 11 SGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDS-NNSRSLADLLFDQLPESIAP--IEELLQELLEKNKRVLLI 86 (166)
T ss_pred CChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhc-cccchHHHHHHHhhccchhh--hHHHHHHHHHcCCceEEE
Confidence 69999999999965433 23455554 4332222 11123333333333322221 111122222 56899999
Q ss_pred EeCCCCchh---------HHHhh-ccCCC-CCCCceEEEEecchhHH---hhcCCCceEecCCCCHHHHHHHHHHhh
Q 039644 74 FDDVTCFSQ---------LESLM-GSLDW-LTPVSRIILTTRNKQVL---RNWGVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 74 lDdv~~~~~---------~~~l~-~~~~~-~~~~~~iivTtR~~~~~---~~~~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
||++++... +..+. ..++. ..+++++++|||..... ........+.+.+++.++..+++.++.
T Consensus 87 lDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 87 LDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred EechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 999986532 22222 22222 24688999999987662 223444679999999999999987764
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.77 E-value=9.8e-08 Score=70.94 Aligned_cols=162 Identities=17% Similarity=0.228 Sum_probs=79.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHH------HHHHHHHHh----cCC---------CC-cCchHH
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACL------RQKLLSNIL----KDK---------NV-MPYIDL 60 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~------~~~l~~~~~----~~~---------~~-~~~~~~ 60 (192)
+|||+|++++.+..++.-...+|+......... ....+ ...+...+. ... .. ......
T Consensus 31 ~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (234)
T PF01637_consen 31 SGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALER 108 (234)
T ss_dssp SSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHH
T ss_pred CCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHH
Confidence 699999999999875443345555432221100 11111 011111121 100 01 114444
Q ss_pred HHhhcC--CceEEEEEeCCCCch----h-------HHHhhccCCCCCCCceEEEEecchhHHhh--------cCCCceEe
Q 039644 61 NFRRLS--RMKVLIVFDDVTCFS----Q-------LESLMGSLDWLTPVSRIILTTRNKQVLRN--------WGVSKIYE 119 (192)
Q Consensus 61 l~~~l~--~~~~LlVlDdv~~~~----~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~--------~~~~~~~~ 119 (192)
+...+. +++.+||+|+++... . +..+........+. .+|++......... .+....+.
T Consensus 109 ~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~ 187 (234)
T PF01637_consen 109 LLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV-SIVITGSSDSLMEEFLDDKSPLFGRFSHIE 187 (234)
T ss_dssp HHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE-EEEEEESSHHHHHHTT-TTSTTTT---EEE
T ss_pred HHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc-eEEEECCchHHHHHhhcccCccccccceEE
Confidence 444443 345999999997655 1 22333333323333 45555554444433 13344599
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHH
Q 039644 120 MEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKV 166 (192)
Q Consensus 120 l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 166 (192)
+++++.+++.+++.........- +......++|...+||+|..|..
T Consensus 188 l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 188 LKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp E----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred EeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 99999999999999865433111 22456678999999999998764
No 8
>PF13173 AAA_14: AAA domain
Probab=98.64 E-value=2.9e-07 Score=62.54 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=69.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||||+++++++.. .-..+++++.... ........+ ..+.+.+....+..+++||++...
T Consensus 13 vGKTtll~~~~~~~~-~~~~~~yi~~~~~---------~~~~~~~~~---------~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 13 VGKTTLLKQLAKDLL-PPENILYINFDDP---------RDRRLADPD---------LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCHHHHHHHHHHHhc-ccccceeeccCCH---------HHHHHhhhh---------hHHHHHHhhccCCcEEEEehhhhh
Confidence 799999999998765 3345666652211 111000000 112233333346788999999988
Q ss_pred hhHHHhhccCCCCCCCceEEEEecchhHHhhc------CCCceEecCCCCHHHH
Q 039644 81 SQLESLMGSLDWLTPVSRIILTTRNKQVLRNW------GVSKIYEMEALEYHHA 128 (192)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~------~~~~~~~l~~l~~~ea 128 (192)
.+|......+-+...+.+|++|+......... +....++|.||+..|.
T Consensus 74 ~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 74 PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88877766666555678999999876665332 3445688999988763
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.54 E-value=6.6e-06 Score=66.32 Aligned_cols=181 Identities=11% Similarity=0.113 Sum_probs=99.8
Q ss_pred CchhHHHHHHHHHhhCCCc--ceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC---cC---chHHHHhhcC--CceE
Q 039644 1 IGKTAIARAIFDKISGDFE--CSCFLENVREESQRPGGLACLRQKLLSNILKDKNV---MP---YIDLNFRRLS--RMKV 70 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~---~~~~l~~~l~--~~~~ 70 (192)
+|||++++.+++++..... ..+++..... .+...++..++.++...... .. ....+...+. +++.
T Consensus 66 tGKT~l~~~v~~~l~~~~~~~~~v~in~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (394)
T PRK00411 66 TGKTTTVKKVFEELEEIAVKVVYVYINCQID-----RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVL 140 (394)
T ss_pred CCHHHHHHHHHHHHHHhcCCcEEEEEECCcC-----CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 6999999999998765542 2344442211 45678888888888652211 11 4455555554 4578
Q ss_pred EEEEeCCCCch------hHHHhhccCCCCC-CCceEEEEecchhHHhhcC-------CCceEecCCCCHHHHHHHHHHhh
Q 039644 71 LIVFDDVTCFS------QLESLMGSLDWLT-PVSRIILTTRNKQVLRNWG-------VSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 71 LlVlDdv~~~~------~~~~l~~~~~~~~-~~~~iivTtR~~~~~~~~~-------~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
+||||+++... .+..+........ ....+|.++.......... ....+.+++++.++..+++..++
T Consensus 141 viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 141 IVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred EEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 99999998642 2444433222211 1223556655543322211 13467899999999999988776
Q ss_pred cCCCCCCccHHHHHHHHHHH----hCCCchHHHHHHHHh-----ccC---CHHHHHHHHHHH
Q 039644 137 FKRNHPDVGYEKLSSNVTKY----AQGIPLALKVLSCFL-----HKR---EKEVWESAIDKL 186 (192)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~----~~g~Plai~~~~~~l-----~~~---~~~~w~~~l~~l 186 (192)
.....+..-.++..+.+.+. .|..+.|+.++-... ++. +.+..+++++++
T Consensus 221 ~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 221 EEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 32211111122233333333 455677776654322 111 255565665554
No 10
>PRK06893 DNA replication initiation factor; Validated
Probab=98.53 E-value=2.2e-06 Score=64.06 Aligned_cols=141 Identities=11% Similarity=0.183 Sum_probs=82.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+|+..+++....+.....|+.. .. .......+ ...+. ..-+|+|||++..
T Consensus 50 ~GKThL~~ai~~~~~~~~~~~~y~~~-~~-------~~~~~~~~-----------------~~~~~-~~dlLilDDi~~~ 103 (229)
T PRK06893 50 SGKSHLLKAVSNHYLLNQRTAIYIPL-SK-------SQYFSPAV-----------------LENLE-QQDLVCLDDLQAV 103 (229)
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEeeH-HH-------hhhhhHHH-----------------Hhhcc-cCCEEEEeChhhh
Confidence 69999999999987655556677762 11 01111111 11111 2248999999863
Q ss_pred ---hhHH-HhhccCCCC-CCCceEEE-Eecc---------hhHHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCcc
Q 039644 81 ---SQLE-SLMGSLDWL-TPVSRIIL-TTRN---------KQVLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDVG 145 (192)
Q Consensus 81 ---~~~~-~l~~~~~~~-~~~~~iiv-TtR~---------~~~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~ 145 (192)
..|+ .+...+... ..+..+|+ |++. +.+...+.....+.+++++.++.++++.+.+.... -.-
T Consensus 104 ~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~--l~l 181 (229)
T PRK06893 104 IGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG--IEL 181 (229)
T ss_pred cCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC--CCC
Confidence 3344 222222211 23555655 4443 34555555567899999999999999998875432 222
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHH
Q 039644 146 YEKLSSNVTKYAQGIPLALKVLSC 169 (192)
Q Consensus 146 ~~~~~~~i~~~~~g~Plai~~~~~ 169 (192)
.++...-|++.+.|..-++..+-.
T Consensus 182 ~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 182 SDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHH
Confidence 345566677778777665544443
No 11
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.44 E-value=3e-06 Score=66.85 Aligned_cols=138 Identities=20% Similarity=0.264 Sum_probs=85.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC-
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC- 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~- 79 (192)
+||||||+.++......|...-=+. .++.++..-+.+. -.....+++.+|.+|.++.
T Consensus 59 ~GKTTlA~liA~~~~~~f~~~sAv~---------~gvkdlr~i~e~a-------------~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 59 TGKTTLARLIAGTTNAAFEALSAVT---------SGVKDLREIIEEA-------------RKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred CCHHHHHHHHHHhhCCceEEecccc---------ccHHHHHHHHHHH-------------HHHHhcCCceEEEEehhhhc
Confidence 6999999999998887776533332 3444544322111 1222347899999999974
Q ss_pred -chhHHHhhccCCCCCCCceEEE--EecchhHHhhc---CCCceEecCCCCHHHHHHHHHHhhcCCCC-----CCccHHH
Q 039644 80 -FSQLESLMGSLDWLTPVSRIIL--TTRNKQVLRNW---GVSKIYEMEALEYHHALELFSQHAFKRNH-----PDVGYEK 148 (192)
Q Consensus 80 -~~~~~~l~~~~~~~~~~~~iiv--TtR~~~~~~~~---~~~~~~~l~~l~~~ea~~lf~~~~~~~~~-----~~~~~~~ 148 (192)
..+-+.|. |....|.-++| ||.++...-.. +...++.+++|+.++...++.+....... .....++
T Consensus 117 nK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~ 193 (436)
T COG2256 117 NKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEE 193 (436)
T ss_pred Chhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHH
Confidence 34456654 44456776776 66665533222 56789999999999999999884321111 1112334
Q ss_pred HHHHHHHHhCCCchH
Q 039644 149 LSSNVTKYAQGIPLA 163 (192)
Q Consensus 149 ~~~~i~~~~~g~Pla 163 (192)
...-++..++|--.+
T Consensus 194 a~~~l~~~s~GD~R~ 208 (436)
T COG2256 194 ALDYLVRLSNGDARR 208 (436)
T ss_pred HHHHHHHhcCchHHH
Confidence 555666666666443
No 12
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.37 E-value=1e-05 Score=69.29 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=106.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--cC---------------chHHHHh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--MP---------------YIDLNFR 63 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~---------------~~~~l~~ 63 (192)
-|||||+-+.+.... .=..+.|++..... -+...+.+.++..+...-+. .+ +.+.+..
T Consensus 48 fGKttl~aq~~~~~~-~~~~v~Wlslde~d----ndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~ 122 (894)
T COG2909 48 FGKTTLLAQWRELAA-DGAAVAWLSLDESD----NDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLN 122 (894)
T ss_pred CcHHHHHHHHHHhcC-cccceeEeecCCcc----CCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHH
Confidence 399999999998433 34688999843221 47788888888877643332 11 4444555
Q ss_pred hcC--CceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhhcC---CCceEecC----CCCHHHH
Q 039644 64 RLS--RMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRNWG---VSKIYEME----ALEYHHA 128 (192)
Q Consensus 64 ~l~--~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~---~~~~~~l~----~l~~~ea 128 (192)
.+. .++..+||||..-..+ ++.+.... ..+-.+|+|||......... ....++++ .++.+|+
T Consensus 123 Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~ 199 (894)
T COG2909 123 ELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEA 199 (894)
T ss_pred HHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHH
Confidence 443 3689999999975432 45554443 45778999999865433321 11222333 4889999
Q ss_pred HHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhcc
Q 039644 129 LELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCFLHK 173 (192)
Q Consensus 129 ~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~ 173 (192)
.++|....+. +......+.+++..+|.+-|+..++=.++.
T Consensus 200 ~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 200 AAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred HHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 9988776422 223455778999999999999999988883
No 13
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.30 E-value=9.4e-07 Score=69.82 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=111.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
|||||++-.+.. +..-|....|+....++ .+...+.-.+...+.-.... ......+..+..+++.++|+||...
T Consensus 25 vgkttl~~~~a~-~~~~~~~~v~~vdl~pi----tD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~llvldnceh 99 (414)
T COG3903 25 VGKTTLALQAAH-AASEYADGVAFVDLAPI----TDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRALLVLDNCEH 99 (414)
T ss_pred cceehhhhhhHh-Hhhhcccceeeeecccc----CchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhHHHHhcCcHH
Confidence 799999999999 88889877777656664 33444444443333322221 2255567778889999999999975
Q ss_pred chh-HHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecCCCCHH-HHHHHHHHhhcCCCC---CCccHHHHHHHHH
Q 039644 80 FSQ-LESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYH-HALELFSQHAFKRNH---PDVGYEKLSSNVT 154 (192)
Q Consensus 80 ~~~-~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~l~~~-ea~~lf~~~~~~~~~---~~~~~~~~~~~i~ 154 (192)
..+ -..+...+..+++.-.++.|+|..... .+...+.+++++.. ++.++|...+..... -.......+.+|+
T Consensus 100 l~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~ic 176 (414)
T COG3903 100 LLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEIC 176 (414)
T ss_pred HHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHH
Confidence 533 222222333345556688888865432 34556777777765 788998877643221 1234466788999
Q ss_pred HHhCCCchHHHHHHHHhccCC
Q 039644 155 KYAQGIPLALKVLSCFLHKRE 175 (192)
Q Consensus 155 ~~~~g~Plai~~~~~~l~~~~ 175 (192)
+..+|.|++|..+++..+.-.
T Consensus 177 r~ldg~~laielaaarv~sl~ 197 (414)
T COG3903 177 RRLDGIPLAIELAAARVRSLS 197 (414)
T ss_pred HHhhcchHHHHHHHHHHHhcC
Confidence 999999999999999887754
No 14
>PF14516 AAA_35: AAA-like domain
Probab=98.28 E-value=5.6e-05 Score=59.66 Aligned_cols=166 Identities=11% Similarity=0.228 Sum_probs=94.8
Q ss_pred CchhHHHHHHHHHhh-CCCcceEEEeecccccc-CCCChHHHHHHHHHHHhcCCCC---------------cCchHHHHh
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCFLENVREESQ-RPGGLACLRQKLLSNILKDKNV---------------MPYIDLNFR 63 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~wv~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~---------------~~~~~~l~~ 63 (192)
+|||+|...+.+..+ +.|.+ ++++ ...... ...+...+++.++..+...-.. ......+.+
T Consensus 42 ~GKTSll~~l~~~l~~~~~~~-v~id-~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~ 119 (331)
T PF14516_consen 42 MGKTSLLLRLLERLQQQGYRC-VYID-LQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEE 119 (331)
T ss_pred CCHHHHHHHHHHHHHHCCCEE-EEEE-eecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHH
Confidence 699999999999875 44444 5665 322211 2235666666666555432111 113333443
Q ss_pred hc---CCceEEEEEeCCCCchh--------HHHhhccCCCC--C--CC-ceEEEEecchh-HHh-----hcCCCceEecC
Q 039644 64 RL---SRMKVLIVFDDVTCFSQ--------LESLMGSLDWL--T--PV-SRIILTTRNKQ-VLR-----NWGVSKIYEME 121 (192)
Q Consensus 64 ~l---~~~~~LlVlDdv~~~~~--------~~~l~~~~~~~--~--~~-~~iivTtR~~~-~~~-----~~~~~~~~~l~ 121 (192)
.+ .+++.+|+||+++.... +..++...... . .. -++++....+. ... ++.....+.|+
T Consensus 120 ~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~ 199 (331)
T PF14516_consen 120 YLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELP 199 (331)
T ss_pred HHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCC
Confidence 32 26899999999985421 22222111110 0 11 11222211111 111 11235678899
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccC
Q 039644 122 ALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCFLHKR 174 (192)
Q Consensus 122 ~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 174 (192)
+++.+|...|...+... .-....+.+...++|||.-+..++..|...
T Consensus 200 ~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 200 DFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999998876422 112237889999999999999999988664
No 15
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.21 E-value=0.00011 Score=53.24 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=61.6
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+.+-++|+|+++... ..+.+...+.+....+.+|++|++.. +.... +....+.+.+++.++..+.+... + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 456689999998653 36667666665555677777776542 11111 34578999999999998888776 1 1
Q ss_pred CccHHHHHHHHHHHhCCCchH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pla 163 (192)
..+.+..+++.++|.|..
T Consensus 170 ---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred ---CHHHHHHHHHHcCCCccc
Confidence 245677899999998863
No 16
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.21 E-value=0.00022 Score=56.92 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=89.2
Q ss_pred CchhHHHHHHHHHhhCCCc------ceEEEeeccccccCCCChHHHHHHHHHHHhc---CCCC--cC---chHHHHhhcC
Q 039644 1 IGKTAIARAIFDKISGDFE------CSCFLENVREESQRPGGLACLRQKLLSNILK---DKNV--MP---YIDLNFRRLS 66 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~------~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~--~~---~~~~l~~~l~ 66 (192)
+|||++++.+++.+.+... ..+|+..... .+...++..++.++.. ..+. .. ....+...+.
T Consensus 51 tGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 125 (365)
T TIGR02928 51 TGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL-----DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN 125 (365)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC-----CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 6999999999997643322 2345542211 4567888888888842 1111 11 3344555553
Q ss_pred --CceEEEEEeCCCCch-----hHHHhhcc--CCCCC-CCceEEEEecchhHHhhc------C-CCceEecCCCCHHHHH
Q 039644 67 --RMKVLIVFDDVTCFS-----QLESLMGS--LDWLT-PVSRIILTTRNKQVLRNW------G-VSKIYEMEALEYHHAL 129 (192)
Q Consensus 67 --~~~~LlVlDdv~~~~-----~~~~l~~~--~~~~~-~~~~iivTtR~~~~~~~~------~-~~~~~~l~~l~~~ea~ 129 (192)
+++++||||+++... .+..+... ..... ....+|.+++........ . ....+.+++.+.++..
T Consensus 126 ~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~ 205 (365)
T TIGR02928 126 ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELR 205 (365)
T ss_pred hcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHH
Confidence 568899999998651 13333322 11111 233455555544322111 1 1256889999999999
Q ss_pred HHHHHhhcCC---CCCCccHHHHHHHHHHHhCCCchHH
Q 039644 130 ELFSQHAFKR---NHPDVGYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 130 ~lf~~~~~~~---~~~~~~~~~~~~~i~~~~~g~Plai 164 (192)
+++..++... ..-++...++...++....|.|..+
T Consensus 206 ~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 206 DILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred HHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 9998876311 1112333334555666677887543
No 17
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.20 E-value=4.4e-05 Score=62.62 Aligned_cols=153 Identities=13% Similarity=0.199 Sum_probs=91.1
Q ss_pred CchhHHHHHHHHHhhCCCcc--eEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCC
Q 039644 1 IGKTAIARAIFDKISGDFEC--SCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVT 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 78 (192)
+|||+|++.+++.+...... ++++ +..++...+...+..... ....++..+++ .-+|||||+.
T Consensus 152 ~GKTHLl~Ai~~~l~~~~~~~~v~yv-----------~~~~f~~~~~~~l~~~~~---~~~~~~~~~~~-~dvLiIDDiq 216 (450)
T PRK14087 152 MGKTHLLKAAKNYIESNFSDLKVSYM-----------SGDEFARKAVDILQKTHK---EIEQFKNEICQ-NDVLIIDDVQ 216 (450)
T ss_pred CcHHHHHHHHHHHHHHhCCCCeEEEE-----------EHHHHHHHHHHHHHHhhh---HHHHHHHHhcc-CCEEEEeccc
Confidence 69999999999976543322 2333 345666666665543211 23344444443 3378889997
Q ss_pred Cch---h-HHHhhccCCC-CCCCceEEEEecchh---------HHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCc
Q 039644 79 CFS---Q-LESLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDV 144 (192)
Q Consensus 79 ~~~---~-~~~l~~~~~~-~~~~~~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~ 144 (192)
... . .+.+...+.. ...+..||+|+.... +...+..+-...+++++.++-.+++.+.+-.......
T Consensus 217 ~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~ 296 (450)
T PRK14087 217 FLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQE 296 (450)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCC
Confidence 432 1 2233222211 124456888865432 2222344567889999999999999887743221113
Q ss_pred cHHHHHHHHHHHhCCCchHHHHHH
Q 039644 145 GYEKLSSNVTKYAQGIPLALKVLS 168 (192)
Q Consensus 145 ~~~~~~~~i~~~~~g~Plai~~~~ 168 (192)
-.++...-|++.+.|.|..+.-+.
T Consensus 297 l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 297 VTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred CCHHHHHHHHHccCCCHHHHHHHH
Confidence 345667778888888888766555
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.13 E-value=5.4e-05 Score=56.23 Aligned_cols=140 Identities=15% Similarity=0.201 Sum_probs=78.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+||+.++++..+.....++++ ... +......+ ...+.. .-+|||||++..
T Consensus 49 ~GKT~la~~~~~~~~~~~~~~~~i~-~~~-------~~~~~~~~-----------------~~~~~~-~~lLvIDdi~~l 102 (226)
T TIGR03420 49 SGKSHLLQAACAAAEERGKSAIYLP-LAE-------LAQADPEV-----------------LEGLEQ-ADLVCLDDVEAI 102 (226)
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEEe-HHH-------HHHhHHHH-----------------Hhhccc-CCEEEEeChhhh
Confidence 6999999999997655544555665 222 11100111 111222 238999999854
Q ss_pred h---hH-HHhhccCCC-CCCCceEEEEecchh---------HHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccH
Q 039644 81 S---QL-ESLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGY 146 (192)
Q Consensus 81 ~---~~-~~l~~~~~~-~~~~~~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~ 146 (192)
. .| +.+...+.. ...+..+|+||+... ..........+.+++++.++...++...+-... -.-.
T Consensus 103 ~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~ 180 (226)
T TIGR03420 103 AGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLP 180 (226)
T ss_pred cCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCC
Confidence 3 22 223222211 123347888887532 122222245789999999998888876542211 1223
Q ss_pred HHHHHHHHHHhCCCchHHHHHH
Q 039644 147 EKLSSNVTKYAQGIPLALKVLS 168 (192)
Q Consensus 147 ~~~~~~i~~~~~g~Plai~~~~ 168 (192)
.+....+.+.+.|.|..+.-+.
T Consensus 181 ~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 181 DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHHHHhccCCHHHHHHHH
Confidence 4455667777888887766554
No 19
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.12 E-value=0.00011 Score=59.71 Aligned_cols=143 Identities=17% Similarity=0.259 Sum_probs=80.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+||||||+.+++.....|.. +. ... ....++ +.+++.... ....+++.+|+||+++..
T Consensus 47 tGKTtLA~~ia~~~~~~~~~---l~-a~~-----~~~~~i-r~ii~~~~~------------~~~~g~~~vL~IDEi~~l 104 (413)
T PRK13342 47 TGKTTLARIIAGATDAPFEA---LS-AVT-----SGVKDL-REVIEEARQ------------RRSAGRRTILFIDEIHRF 104 (413)
T ss_pred CCHHHHHHHHHHHhCCCEEE---Ee-ccc-----ccHHHH-HHHHHHHHH------------hhhcCCceEEEEechhhh
Confidence 69999999999977654422 11 110 122222 222222211 011356789999999865
Q ss_pred h--hHHHhhccCCCCCCCceEEEE--ecchhHH---hhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCC-ccHHHHHHH
Q 039644 81 S--QLESLMGSLDWLTPVSRIILT--TRNKQVL---RNWGVSKIYEMEALEYHHALELFSQHAFKRNHPD-VGYEKLSSN 152 (192)
Q Consensus 81 ~--~~~~l~~~~~~~~~~~~iivT--tR~~~~~---~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~-~~~~~~~~~ 152 (192)
. +.+.+...+. .+..+++. |.+.... ...+....+.+.+++.++...++.+......... ....+....
T Consensus 105 ~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~ 181 (413)
T PRK13342 105 NKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDA 181 (413)
T ss_pred CHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 3 3455554443 24444443 3333211 1113346899999999999999987653211111 233556778
Q ss_pred HHHHhCCCchHHHHHH
Q 039644 153 VTKYAQGIPLALKVLS 168 (192)
Q Consensus 153 i~~~~~g~Plai~~~~ 168 (192)
+++.++|.+..+..+.
T Consensus 182 l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 182 LARLANGDARRALNLL 197 (413)
T ss_pred HHHhCCCCHHHHHHHH
Confidence 8888999887654443
No 20
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=0.00029 Score=55.19 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=85.6
Q ss_pred CchhHHHHHHHHHhh------CCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEE
Q 039644 1 IGKTAIARAIFDKIS------GDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVF 74 (192)
Q Consensus 1 iGKTtLa~~~~~~~~------~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVl 74 (192)
+|||++|+.+++.+- .|.+...|.. ... .. ..+.++. ++.+.+...+ ..+++-++|+
T Consensus 37 ~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~~--~~-i~v~~ir-~~~~~~~~~p------------~~~~~kv~iI 99 (313)
T PRK05564 37 IGKSLLAKEIALKILGKSQQREYVDIIEFKP-INK--KS-IGVDDIR-NIIEEVNKKP------------YEGDKKVIII 99 (313)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-ccC--CC-CCHHHHH-HHHHHHhcCc------------ccCCceEEEE
Confidence 599999999999642 2333333432 111 11 2333432 3333332211 1245557788
Q ss_pred eCCCCc--hhHHHhhccCCCCCCCceEEEEecchhHHhh--cCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHH
Q 039644 75 DDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQVLRN--WGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLS 150 (192)
Q Consensus 75 Ddv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~--~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~ 150 (192)
|+++.. ..++.+...+.+...++.+|++|.+...... -+....+.+.+++.++....+...... ...+.+
T Consensus 100 ~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ 173 (313)
T PRK05564 100 YNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND------IKEEEK 173 (313)
T ss_pred echhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC------CCHHHH
Confidence 887654 4588888888877788999988876543221 144678999999999988877654311 112335
Q ss_pred HHHHHHhCCCchHH
Q 039644 151 SNVTKYAQGIPLAL 164 (192)
Q Consensus 151 ~~i~~~~~g~Plai 164 (192)
..++..++|.|.-+
T Consensus 174 ~~l~~~~~g~~~~a 187 (313)
T PRK05564 174 KSAIAFSDGIPGKV 187 (313)
T ss_pred HHHHHHcCCCHHHH
Confidence 67788888887544
No 21
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00011 Score=62.19 Aligned_cols=98 Identities=11% Similarity=0.080 Sum_probs=64.8
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|||+++... .++.|...+.....++++|++|.+.. +...+ +....+.++.++.++..+.+.+.+.....
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi- 201 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI- 201 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-
Confidence 455699999999664 47777776666556677777666543 22222 44578999999999999888876532221
Q ss_pred CccHHHHHHHHHHHhCCCchHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKV 166 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~ 166 (192)
....+....|++.++|.|.....
T Consensus 202 -~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 202 -AHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12234456788889988864433
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=0.00011 Score=63.10 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=64.9
Q ss_pred CceEEEEEeCCCCchh--HHHhhccCCCCCCCceEEEEecchhHHhh--cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFSQ--LESLMGSLDWLTPVSRIILTTRNKQVLRN--WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~iivTtR~~~~~~~--~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|||+++.... ++.+...+......+++|++|++...... .+....+.++.++.++..+.+.+......
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-- 195 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-- 195 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--
Confidence 3445899999997654 77777666555567888888877553321 14467899999999999998887653222
Q ss_pred CccHHHHHHHHHHHhCCCch-HHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPL-ALKV 166 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pl-ai~~ 166 (192)
-....+....|++.++|... |+.+
T Consensus 196 I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 196 IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 11234455667777777553 4443
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00027 Score=56.48 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=62.1
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|+|+++... .++.+...+......+++|++|.+.. +.... +....+++.+++.++..+.+...+....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-- 195 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-- 195 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 345699999998765 36667666665556667777765533 22222 4457899999999999888776553221
Q ss_pred CccHHHHHHHHHHHhCCCchH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pla 163 (192)
..-.++....|++.++|.|..
T Consensus 196 ~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 196 IDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred CCCCHHHHHHHHHHcCCCHHH
Confidence 112334566778888887763
No 24
>PRK08727 hypothetical protein; Validated
Probab=98.05 E-value=9.6e-05 Score=55.41 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=78.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+|+..+++...+......|+.. .. ....+...++ .+ ...-+|||||++..
T Consensus 52 ~GKThL~~a~~~~~~~~~~~~~y~~~-~~-------~~~~~~~~~~-----------------~l-~~~dlLiIDDi~~l 105 (233)
T PRK08727 52 TGKTHLALALCAAAEQAGRSSAYLPL-QA-------AAGRLRDALE-----------------AL-EGRSLVALDGLESI 105 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEEeH-HH-------hhhhHHHHHH-----------------HH-hcCCEEEEeCcccc
Confidence 69999999999986655455566652 11 1111111111 11 12248999999743
Q ss_pred h---hHH-HhhccCCC-CCCCceEEEEecchh---------HHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccH
Q 039644 81 S---QLE-SLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGY 146 (192)
Q Consensus 81 ~---~~~-~l~~~~~~-~~~~~~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~ 146 (192)
. .+. .+...+.. ...+..+|+||+... ....+.....+++++++.++-..++.+.+.... -.-.
T Consensus 106 ~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~ 183 (233)
T PRK08727 106 AGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG--LALD 183 (233)
T ss_pred cCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCC
Confidence 2 232 22221111 124566999987532 222223356899999999999999998664322 2233
Q ss_pred HHHHHHHHHHhCCCchHH
Q 039644 147 EKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 147 ~~~~~~i~~~~~g~Plai 164 (192)
++...-|++.+.|..-.+
T Consensus 184 ~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 184 EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 455667777787665554
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00017 Score=63.01 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=64.5
Q ss_pred CCceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCC
Q 039644 66 SRMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNH 141 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~ 141 (192)
.++.-++|||+++... .++.|+..+-......++|++|.+.. +...+ .....+.+++++.++....+.+.+....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg- 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ- 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-
Confidence 3556699999998653 46777666655555666777665433 22221 4457899999999999988877653211
Q ss_pred CCccHHHHHHHHHHHhCCCchHHH
Q 039644 142 PDVGYEKLSSNVTKYAQGIPLALK 165 (192)
Q Consensus 142 ~~~~~~~~~~~i~~~~~g~Plai~ 165 (192)
-....+....|++.++|.|.-+.
T Consensus 196 -I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 196 -LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHH
Confidence 12234556678888888876443
No 26
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.96 E-value=0.00014 Score=54.04 Aligned_cols=145 Identities=14% Similarity=0.196 Sum_probs=79.6
Q ss_pred CchhHHHHHHHHHhhCCCcc--eEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCC
Q 039644 1 IGKTAIARAIFDKISGDFEC--SCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVT 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 78 (192)
+|||.|...+++.+.+..+. ++++ +..++...+...+... ....++..+++-. +|+|||++
T Consensus 45 ~GKTHLL~Ai~~~~~~~~~~~~v~y~-----------~~~~f~~~~~~~~~~~-----~~~~~~~~~~~~D-lL~iDDi~ 107 (219)
T PF00308_consen 45 LGKTHLLQAIANEAQKQHPGKRVVYL-----------SAEEFIREFADALRDG-----EIEEFKDRLRSAD-LLIIDDIQ 107 (219)
T ss_dssp SSHHHHHHHHHHHHHHHCTTS-EEEE-----------EHHHHHHHHHHHHHTT-----SHHHHHHHHCTSS-EEEEETGG
T ss_pred CCHHHHHHHHHHHHHhccccccceee-----------cHHHHHHHHHHHHHcc-----cchhhhhhhhcCC-EEEEecch
Confidence 59999999999987654443 3444 3456666665555442 3344555666433 68899997
Q ss_pred Cch---hHH-HhhccCCC-CCCCceEEEEecchh---------HHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCc
Q 039644 79 CFS---QLE-SLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDV 144 (192)
Q Consensus 79 ~~~---~~~-~l~~~~~~-~~~~~~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~ 144 (192)
... .|. .+...+.. ...|.++|+|++... .......+-.+++++.+.++-..++.+.+....- .
T Consensus 108 ~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~--~ 185 (219)
T PF00308_consen 108 FLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI--E 185 (219)
T ss_dssp GGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----
T ss_pred hhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC--C
Confidence 542 122 22211111 135678999995532 2222244567889999999999998887743222 1
Q ss_pred cHHHHHHHHHHHhCCCchHH
Q 039644 145 GYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 145 ~~~~~~~~i~~~~~g~Plai 164 (192)
-.++...-|.+.+.+..-.+
T Consensus 186 l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 186 LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp S-HHHHHHHHHHTTSSHHHH
T ss_pred CcHHHHHHHHHhhcCCHHHH
Confidence 23344455555555444433
No 27
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.95 E-value=0.00011 Score=57.13 Aligned_cols=54 Identities=17% Similarity=0.064 Sum_probs=39.6
Q ss_pred CceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHH
Q 039644 115 SKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCF 170 (192)
Q Consensus 115 ~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 170 (192)
...+.+++++.++..+++.+.+.... ..-.++....|++.|+|.|..+..++..
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34678999999999999998775322 2233556778999999999876555543
No 28
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.95 E-value=3e-05 Score=52.44 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=64.9
Q ss_pred CchhHHHHHHHHHhhCC-----CcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC---chHHHHhhcCCc-eE
Q 039644 1 IGKTAIARAIFDKISGD-----FECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP---YIDLNFRRLSRM-KV 70 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-----F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~l~~~l~~~-~~ 70 (192)
+|||+++..+++..... -..++|+..... .+...+...++..+...... .. ..+.+...+... ..
T Consensus 15 ~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~ 89 (131)
T PF13401_consen 15 SGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS-----RTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVV 89 (131)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH-----SSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEE
T ss_pred CCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC-----CCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCe
Confidence 69999999999976432 245567763333 47889999999999866554 22 556666666544 46
Q ss_pred EEEEeCCCCc-h--hHHHhhccCCCCCCCceEEEEecc
Q 039644 71 LIVFDDVTCF-S--QLESLMGSLDWLTPVSRIILTTRN 105 (192)
Q Consensus 71 LlVlDdv~~~-~--~~~~l~~~~~~~~~~~~iivTtR~ 105 (192)
+||+|+++.. . .++.+.... + ..+.++|+..+.
T Consensus 90 ~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 90 LLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp EEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred EEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 9999999865 3 244443322 2 566677777654
No 29
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00045 Score=58.71 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=62.8
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhHHh-h-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVLR-N-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~~-~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|+|+++... ..+.+...+.....+.++|++|.+..... . .+....+++.+++.++....+...+....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-- 194 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-- 194 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--
Confidence 455689999998653 46667666655556677888776543221 1 14567899999999999888877653322
Q ss_pred CccHHHHHHHHHHHhCCCchHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai 164 (192)
-....+....|++.++|.+..+
T Consensus 195 I~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 195 IAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1223445566777777776443
No 30
>PRK09087 hypothetical protein; Validated
Probab=97.91 E-value=0.0009 Score=49.95 Aligned_cols=112 Identities=10% Similarity=0.102 Sum_probs=68.2
Q ss_pred EEEEeCCCCch----hHHHhhccCCCCCCCceEEEEecc---------hhHHhhcCCCceEecCCCCHHHHHHHHHHhhc
Q 039644 71 LIVFDDVTCFS----QLESLMGSLDWLTPVSRIILTTRN---------KQVLRNWGVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 71 LlVlDdv~~~~----~~~~l~~~~~~~~~~~~iivTtR~---------~~~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
++++||++... .+-.+...+. ..|..+|+|++. +.....+.....+++++++.++-.+++.+.+-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 78889996431 2222222222 346679998863 33444445668899999999999999998774
Q ss_pred CCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHh------ccCC--HHHHHHHHHHH
Q 039644 138 KRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCFL------HKRE--KEVWESAIDKL 186 (192)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~~~--~~~w~~~l~~l 186 (192)
... -.-.++...-|++.+.|..-++..+-..| ..+. ....+++++.+
T Consensus 168 ~~~--~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 168 DRQ--LYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred HcC--CCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 322 12234556667777777766655432222 2222 67777777654
No 31
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.001 Score=55.35 Aligned_cols=95 Identities=13% Similarity=0.203 Sum_probs=62.0
Q ss_pred CceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEe-cchhHHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTT-RNKQVLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTt-R~~~~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++.. ..++.+...+......+.+|+.| +...+.... +....+.+.+++.++....+...+.....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi- 205 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL- 205 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-
Confidence 45668999999864 45777777766555666666554 333333322 44567999999999999988877643221
Q ss_pred CccHHHHHHHHHHHhCCCchH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pla 163 (192)
....+....|++.++|.+.-
T Consensus 206 -~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 206 -KTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred -CCCHHHHHHHHHHcCCCHHH
Confidence 12234456677788877644
No 32
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00089 Score=55.76 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=62.4
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++... .++.+...+......+.+|++|.... +.... +....+.+.+++.++..+.+...+-....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi- 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR- 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 456699999998653 46777766665555566666665432 22222 44568999999999999998876633221
Q ss_pred CccHHHHHHHHHHHhCCCchHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai 164 (192)
....+....|++.++|.+--+
T Consensus 194 -~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 194 -EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred -CCCHHHHHHHHHHcCCCHHHH
Confidence 123445667788888877544
No 33
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.87 E-value=0.00045 Score=51.85 Aligned_cols=140 Identities=14% Similarity=0.180 Sum_probs=78.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+|+..+++.....-..+.++. ... ....... +.+.+.. --++++||+...
T Consensus 56 ~GKThLl~a~~~~~~~~~~~v~y~~-~~~-------~~~~~~~-----------------~~~~~~~-~dlliiDdi~~~ 109 (235)
T PRK08084 56 AGRSHLLHAACAELSQRGRAVGYVP-LDK-------RAWFVPE-----------------VLEGMEQ-LSLVCIDNIECI 109 (235)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEE-HHH-------HhhhhHH-----------------HHHHhhh-CCEEEEeChhhh
Confidence 6999999999997655434455655 211 0000001 1111111 137999999753
Q ss_pred ---hhHHHhh-ccCCC-CCCC-ceEEEEecchh---------HHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCcc
Q 039644 81 ---SQLESLM-GSLDW-LTPV-SRIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDVG 145 (192)
Q Consensus 81 ---~~~~~l~-~~~~~-~~~~-~~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~ 145 (192)
..|+... ..+.. ...| .++|+||+... ....+....++.+++++.++-.+++.+.+.... -.-
T Consensus 110 ~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l 187 (235)
T PRK08084 110 AGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FEL 187 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCC
Confidence 2343221 11111 1123 47999987543 333334567899999999999998887553321 223
Q ss_pred HHHHHHHHHHHhCCCchHHHHHH
Q 039644 146 YEKLSSNVTKYAQGIPLALKVLS 168 (192)
Q Consensus 146 ~~~~~~~i~~~~~g~Plai~~~~ 168 (192)
.++...-|++.+.|..-++..+-
T Consensus 188 ~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 188 PEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred CHHHHHHHHHhhcCCHHHHHHHH
Confidence 34556667777776665544443
No 34
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.86 E-value=0.00044 Score=55.91 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=49.0
Q ss_pred ceEEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHhhc------CCCceEecCCCCHHHHHH
Q 039644 68 MKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNW------GVSKIYEMEALEYHHALE 130 (192)
Q Consensus 68 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~------~~~~~~~l~~l~~~ea~~ 130 (192)
++..|+||.|.....|......+.+.+.. +|++|+.+....... |....+.+-||+..|-..
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 77899999999999999888887776665 889987765543332 556789999999999865
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.85 E-value=0.00026 Score=55.78 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=39.7
Q ss_pred CceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHH
Q 039644 115 SKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSC 169 (192)
Q Consensus 115 ~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 169 (192)
...+.+++++.++..+++.+.+.... ....++....|++.|+|.|..+..+..
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 35689999999999999998875432 223456688999999999975555544
No 36
>PRK05642 DNA replication initiation factor; Validated
Probab=97.84 E-value=0.00043 Score=51.97 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=79.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||.|+..+++.+...-..++|++ . .++.... ..+.+.+.+-. +||+||+...
T Consensus 56 ~GKTHLl~a~~~~~~~~~~~v~y~~-~----------~~~~~~~--------------~~~~~~~~~~d-~LiiDDi~~~ 109 (234)
T PRK05642 56 VGRSHLLQAACLRFEQRGEPAVYLP-L----------AELLDRG--------------PELLDNLEQYE-LVCLDDLDVI 109 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEee-H----------HHHHhhh--------------HHHHHhhhhCC-EEEEechhhh
Confidence 6999999999987654434556665 1 2222110 11222233222 6889999732
Q ss_pred ---hhHHH-hhccCCC-CCCCceEEEEecchhHH---------hhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccH
Q 039644 81 ---SQLES-LMGSLDW-LTPVSRIILTTRNKQVL---------RNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGY 146 (192)
Q Consensus 81 ---~~~~~-l~~~~~~-~~~~~~iivTtR~~~~~---------~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~ 146 (192)
..|+. +...+.. ...|..+|+|++..... ..+.....+.+++++.++-.++++..+.... -.-.
T Consensus 110 ~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~--~~l~ 187 (234)
T PRK05642 110 AGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG--LHLT 187 (234)
T ss_pred cCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCCC
Confidence 23332 3322221 23466788888753322 1223346788999999999999885553321 1222
Q ss_pred HHHHHHHHHHhCCCchHHHHHHH
Q 039644 147 EKLSSNVTKYAQGIPLALKVLSC 169 (192)
Q Consensus 147 ~~~~~~i~~~~~g~Plai~~~~~ 169 (192)
++...-|++.+.|..-.+..+-.
T Consensus 188 ~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 188 DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Confidence 45666677777777655444433
No 37
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00045 Score=58.87 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=62.3
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|||+++... ..+.+...+-.....+++|++|.+.. +...+ +....+.+++++.++....+....-...
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-- 195 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-- 195 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--
Confidence 456699999998654 46777666555455666666655533 22221 4467899999999999988877552211
Q ss_pred CccHHHHHHHHHHHhCCCchHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALK 165 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~ 165 (192)
-.........|++.++|.+..+.
T Consensus 196 i~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 196 IPFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 11223455678888888776433
No 38
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0015 Score=51.54 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=60.6
Q ss_pred ceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhHHh-hc-CCCceEecCCCCHHHHHHHHHHhhcCCCCCC
Q 039644 68 MKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVLR-NW-GVSKIYEMEALEYHHALELFSQHAFKRNHPD 143 (192)
Q Consensus 68 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~~-~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~ 143 (192)
.+-++|+|+++... ..+.+...+-.-..++.+|++|.+..... .+ +....+.+.+++.+++.+.+......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~----- 180 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE----- 180 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-----
Confidence 44456789999664 46666666655556778888887754322 22 45677999999999999888765311
Q ss_pred ccHHHHHHHHHHHhCCCchHHH
Q 039644 144 VGYEKLSSNVTKYAQGIPLALK 165 (192)
Q Consensus 144 ~~~~~~~~~i~~~~~g~Plai~ 165 (192)
...+.+..++..++|.|+...
T Consensus 181 -~~~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 181 -SDERERIELLTLAGGSPLRAL 201 (328)
T ss_pred -CChHHHHHHHHHcCCCHHHHH
Confidence 112334566788889887443
No 39
>PRK04132 replication factor C small subunit; Provisional
Probab=97.82 E-value=0.0015 Score=57.36 Aligned_cols=147 Identities=13% Similarity=0.148 Sum_probs=88.3
Q ss_pred CchhHHHHHHHHHh-hCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKI-SGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+||||+|..+++++ ...+...+.-.+.++. .++. .++.+++......+. -..+.-++|||+++.
T Consensus 577 lGKTT~A~ala~~l~g~~~~~~~lElNASd~----rgid-~IR~iIk~~a~~~~~----------~~~~~KVvIIDEaD~ 641 (846)
T PRK04132 577 LHNTTAALALARELFGENWRHNFLELNASDE----RGIN-VIREKVKEFARTKPI----------GGASFKIIFLDEADA 641 (846)
T ss_pred ccHHHHHHHHHHhhhcccccCeEEEEeCCCc----ccHH-HHHHHHHHHHhcCCc----------CCCCCEEEEEECccc
Confidence 59999999999985 3334332222223331 2333 344444443322210 012346999999997
Q ss_pred ch--hHHHhhccCCCCCCCceEEEEecchhHHh-hc-CCCceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Q 039644 80 FS--QLESLMGSLDWLTPVSRIILTTRNKQVLR-NW-GVSKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTK 155 (192)
Q Consensus 80 ~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~~-~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~ 155 (192)
.. ....+...+-.....+++|++|....-.. .. +....+.+.+++.++....+.+.+-...- ...++....|++
T Consensus 642 Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i~~e~L~~Ia~ 719 (846)
T PRK04132 642 LTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILY 719 (846)
T ss_pred CCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHH
Confidence 64 46666666655556778888776654222 21 45678999999999988887765532111 112446677888
Q ss_pred HhCCCchHH
Q 039644 156 YAQGIPLAL 164 (192)
Q Consensus 156 ~~~g~Plai 164 (192)
.++|.+...
T Consensus 720 ~s~GDlR~A 728 (846)
T PRK04132 720 IAEGDMRRA 728 (846)
T ss_pred HcCCCHHHH
Confidence 888877543
No 40
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0015 Score=52.23 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=63.3
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhHHh-hc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVLR-NW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~~-~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+.+-++|+|+++..+ ....+...+.....++.+|++|.+..... .. +....+.+.+++.++..+++...... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--L- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--C-
Confidence 456799999998654 35566655555445667788777654322 21 45678999999999999998775411 1
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKVL 167 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~~ 167 (192)
.......++..++|.|+....+
T Consensus 217 ---~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 217 ---PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1122256788899999855444
No 41
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.81 E-value=0.00045 Score=56.03 Aligned_cols=144 Identities=12% Similarity=0.172 Sum_probs=80.5
Q ss_pred CchhHHHHHHHHHhhCCCcc--eEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCC
Q 039644 1 IGKTAIARAIFDKISGDFEC--SCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVT 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 78 (192)
+|||+|++.+++.+.+..+. ++++. ..++...+...+... ....+...+++ .-+|+|||++
T Consensus 147 ~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~dlLiiDDi~ 209 (405)
T TIGR00362 147 LGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN-----KMEEFKEKYRS-VDLLLIDDIQ 209 (405)
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC-----CHHHHHHHHHh-CCEEEEehhh
Confidence 69999999999987665432 34443 334444555444322 22334444433 3388999997
Q ss_pred Cch---hH-HHhhccCCC-CCCCceEEEEecchh---------HHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCc
Q 039644 79 CFS---QL-ESLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDV 144 (192)
Q Consensus 79 ~~~---~~-~~l~~~~~~-~~~~~~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~ 144 (192)
... .+ +.+...+.. ...+..+|+|+.... +...+..+..+.+++.+.++-..++.+.+.... -.
T Consensus 210 ~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~--~~ 287 (405)
T TIGR00362 210 FLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG--LE 287 (405)
T ss_pred hhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC--CC
Confidence 432 11 222222211 123456888876422 112223345788999999999999988774322 12
Q ss_pred cHHHHHHHHHHHhCCCchH
Q 039644 145 GYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 145 ~~~~~~~~i~~~~~g~Pla 163 (192)
-.++...-|++.+.|.+-.
T Consensus 288 l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 288 LPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred CCHHHHHHHHHhcCCCHHH
Confidence 2244555666666665543
No 42
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.0014 Score=54.90 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=58.7
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++... .++.+...+.+....+.+|++|.+.. +... .+....+++++++.++....+...+-...
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-- 195 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-- 195 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--
Confidence 456699999998553 46777766665555666666554432 2222 24467899999999998877776442211
Q ss_pred CccHHHHHHHHHHHhCCCch
Q 039644 143 DVGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pl 162 (192)
-.........|++.++|.+.
T Consensus 196 i~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 196 INSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 12234445567777777654
No 43
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.80 E-value=0.0004 Score=57.14 Aligned_cols=144 Identities=10% Similarity=0.137 Sum_probs=81.7
Q ss_pred CchhHHHHHHHHHhhCCCcc--eEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCC
Q 039644 1 IGKTAIARAIFDKISGDFEC--SCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVT 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 78 (192)
+|||+|++.+++.+.++++. ++++. ..++...+...+... ....+...++. .-+|+|||++
T Consensus 159 ~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~dlLiiDDi~ 221 (450)
T PRK00149 159 LGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN-----TMEEFKEKYRS-VDVLLIDDIQ 221 (450)
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC-----cHHHHHHHHhc-CCEEEEehhh
Confidence 69999999999988776543 33443 344444554444321 22334444443 3489999997
Q ss_pred Cch----hHHHhhccCCC-CCCCceEEEEecchh---------HHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCc
Q 039644 79 CFS----QLESLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDV 144 (192)
Q Consensus 79 ~~~----~~~~l~~~~~~-~~~~~~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~ 144 (192)
... ..+.+...+.. ...+..+|+||.... +...+.....+.+++.+.++-..++...+-... -.
T Consensus 222 ~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~--~~ 299 (450)
T PRK00149 222 FLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG--ID 299 (450)
T ss_pred hhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC--CC
Confidence 421 11222221111 123455888876532 122223456789999999999999998774322 12
Q ss_pred cHHHHHHHHHHHhCCCchH
Q 039644 145 GYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 145 ~~~~~~~~i~~~~~g~Pla 163 (192)
-.++...-|++.+.|....
T Consensus 300 l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 300 LPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred CCHHHHHHHHcCcCCCHHH
Confidence 2334455566666665543
No 44
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.0015 Score=54.04 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=61.4
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecch-hHHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|+|+++... .++.+...+.+....+++|++|.+. .+.... +....+.+.+++.++....+...+....
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg-- 192 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN-- 192 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC--
Confidence 345589999998553 4677777666655667777766442 332222 4567899999999998888887664322
Q ss_pred CccHHHHHHHHHHHhCCCchH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pla 163 (192)
-.-.++....|++.++|.+..
T Consensus 193 i~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 193 IEHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred CCCCHHHHHHHHHHcCCCHHH
Confidence 122334455677777777653
No 45
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0018 Score=52.36 Aligned_cols=91 Identities=11% Similarity=0.109 Sum_probs=59.3
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++++|+++... ..+.+...+.....++.+|++|.+.. +...+ +....+.+.+++.++..+.+....+ .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C-
Confidence 445588899998664 34555555555455676777776643 22222 4467899999999999888864321 1
Q ss_pred CccHHHHHHHHHHHhCCCchHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai 164 (192)
..+.+..++..++|.|...
T Consensus 192 ---~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 192 ---DPETARRAARASQGHIGRA 210 (394)
T ss_pred ---CHHHHHHHHHHcCCCHHHH
Confidence 1344567788888988644
No 46
>PLN03025 replication factor C subunit; Provisional
Probab=97.77 E-value=0.00092 Score=52.52 Aligned_cols=147 Identities=11% Similarity=0.122 Sum_probs=78.0
Q ss_pred CchhHHHHHHHHHh-hCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKI-SGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+||||+|..+++.+ ...|...+.-.+.++. ... +..+...+.+...... ...++.-+++||+++.
T Consensus 45 ~GKTtla~~la~~l~~~~~~~~~~eln~sd~----~~~-~~vr~~i~~~~~~~~~---------~~~~~~kviiiDE~d~ 110 (319)
T PLN03025 45 TGKTTSILALAHELLGPNYKEAVLELNASDD----RGI-DVVRNKIKMFAQKKVT---------LPPGRHKIVILDEADS 110 (319)
T ss_pred CCHHHHHHHHHHHHhcccCccceeeeccccc----ccH-HHHHHHHHHHHhcccc---------CCCCCeEEEEEechhh
Confidence 69999999999975 3334322111111110 122 2233333322211100 0023466999999986
Q ss_pred chh--HHHhhccCCCCCCCceEEEEecchhHH-hh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Q 039644 80 FSQ--LESLMGSLDWLTPVSRIILTTRNKQVL-RN-WGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTK 155 (192)
Q Consensus 80 ~~~--~~~l~~~~~~~~~~~~iivTtR~~~~~-~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~ 155 (192)
... ...+...+......+++++++...... .. -+....+++++++.++....+...+-.... .-.++....+++
T Consensus 111 lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi--~i~~~~l~~i~~ 188 (319)
T PLN03025 111 MTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKV--PYVPEGLEAIIF 188 (319)
T ss_pred cCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHH
Confidence 642 344443343334567777777543211 11 133467999999999988888776532221 112344566777
Q ss_pred HhCCCchH
Q 039644 156 YAQGIPLA 163 (192)
Q Consensus 156 ~~~g~Pla 163 (192)
.++|....
T Consensus 189 ~~~gDlR~ 196 (319)
T PLN03025 189 TADGDMRQ 196 (319)
T ss_pred HcCCCHHH
Confidence 77776543
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.0015 Score=55.54 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=60.3
Q ss_pred ceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecch-hHHhh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCCC
Q 039644 68 MKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRN-WGVSKIYEMEALEYHHALELFSQHAFKRNHPD 143 (192)
Q Consensus 68 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~-~~~~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~ 143 (192)
+.-++|||+++... .++.+...+......+++|++|.+. .+... .+....+.+++++.++....+...+.....
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-- 201 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-- 201 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--
Confidence 34489999999654 4777777666555666777666442 22212 245678999999999988888776532221
Q ss_pred ccHHHHHHHHHHHhCCCchHH
Q 039644 144 VGYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 144 ~~~~~~~~~i~~~~~g~Plai 164 (192)
....+....|++.++|.+.-+
T Consensus 202 ~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 202 PAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred CCCHHHHHHHHHHcCCCHHHH
Confidence 122344566777777766443
No 48
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00093 Score=55.74 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=58.5
Q ss_pred CceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|+|+++.. ..++.+...+......+++|++|.+.. +.... +....+++++++.++....+...+-....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi- 196 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV- 196 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 44558999999865 346767666665556677777665432 21111 34567889999998877766555422211
Q ss_pred CccHHHHHHHHHHHhCCCchHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai 164 (192)
.........|++.++|.+..+
T Consensus 197 -~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 197 -EFENAALDLLARAANGSVRDA 217 (509)
T ss_pred -CCCHHHHHHHHHHcCCcHHHH
Confidence 112344556777777776543
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.75 E-value=0.0016 Score=51.26 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=57.1
Q ss_pred ceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhH-Hhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCCC
Q 039644 68 MKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQV-LRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHPD 143 (192)
Q Consensus 68 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~ 143 (192)
.+-++|+||++... ....+...+......+++|+|+..... .... +....+.+.+++.++....+...+.....
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-- 202 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-- 202 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--
Confidence 44589999998653 234444433333455778888754321 1111 34567889999999988888776532221
Q ss_pred ccHHHHHHHHHHHhCCCchHH
Q 039644 144 VGYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 144 ~~~~~~~~~i~~~~~g~Plai 164 (192)
.-..+....+++.++|.+-.+
T Consensus 203 ~~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 203 DYDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred CCCHHHHHHHHHHcCCCHHHH
Confidence 123445666777777765543
No 50
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.0013 Score=53.98 Aligned_cols=142 Identities=10% Similarity=0.119 Sum_probs=79.0
Q ss_pred CchhHHHHHHHHHhhCCCcc--eEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCC
Q 039644 1 IGKTAIARAIFDKISGDFEC--SCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVT 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 78 (192)
+|||+|+..+++.+.+.++. ++|+. ..++...+...+... ....++..++...-+|+|||++
T Consensus 141 ~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~-----~~~~f~~~~~~~~dvLlIDDi~ 204 (440)
T PRK14088 141 LGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG-----KLNEFREKYRKKVDVLLIDDVQ 204 (440)
T ss_pred CcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhcc-----cHHHHHHHHHhcCCEEEEechh
Confidence 69999999999987665432 34443 345555555554322 2233444444455689999997
Q ss_pred Cch---hH-HHhhccCCC-CCCCceEEEEecc-hhH--------HhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCc
Q 039644 79 CFS---QL-ESLMGSLDW-LTPVSRIILTTRN-KQV--------LRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDV 144 (192)
Q Consensus 79 ~~~---~~-~~l~~~~~~-~~~~~~iivTtR~-~~~--------~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~ 144 (192)
... .+ +.+...+.. ...+..+|+||.. +.- ...+..+..+.+++.+.+.-..++.+.+..... .
T Consensus 205 ~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~--~ 282 (440)
T PRK14088 205 FLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG--E 282 (440)
T ss_pred hhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC--C
Confidence 431 11 222222111 1234568888753 221 111233457889999999999998887643221 1
Q ss_pred cHHHHHHHHHHHhCCC
Q 039644 145 GYEKLSSNVTKYAQGI 160 (192)
Q Consensus 145 ~~~~~~~~i~~~~~g~ 160 (192)
-.++...-|++.+.|.
T Consensus 283 l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 283 LPEEVLNFVAENVDDN 298 (440)
T ss_pred CCHHHHHHHHhccccC
Confidence 2234445555555544
No 51
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.73 E-value=6.2e-05 Score=60.02 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=50.4
Q ss_pred CchhHHHHHHHHHhhC-CCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--cC--------chHHHHhh-cCCc
Q 039644 1 IGKTAIARAIFDKISG-DFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--MP--------YIDLNFRR-LSRM 68 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~--------~~~~l~~~-l~~~ 68 (192)
+||||||+++++.+.. +|+..+|+.++++. +..+.+++..+...+.....+ .. ..+..... -.++
T Consensus 180 vGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~ 256 (416)
T PRK09376 180 AGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGK 256 (416)
T ss_pred CChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6999999999997643 79999999876552 136778887776433222222 11 22222222 2578
Q ss_pred eEEEEEeCCCCc
Q 039644 69 KVLIVFDDVTCF 80 (192)
Q Consensus 69 ~~LlVlDdv~~~ 80 (192)
+.||++|++...
T Consensus 257 dVlL~iDsItR~ 268 (416)
T PRK09376 257 DVVILLDSITRL 268 (416)
T ss_pred CEEEEEEChHHH
Confidence 999999999643
No 52
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.0072 Score=48.14 Aligned_cols=98 Identities=9% Similarity=0.123 Sum_probs=63.2
Q ss_pred CceEEEEEeCCCCchh--HHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFSQ--LESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|+|+++.... .+.+...+.....++.+|++|.... +.... +....+.+.+++.++..+.+...... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~- 216 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q- 216 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c-
Confidence 4566999999996643 5555555554445566666665443 22222 34578999999999999998874311 1
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKVLS 168 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~~~ 168 (192)
. ...+....+++.++|.|.....+.
T Consensus 217 ~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 217 G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 223446788999999998654443
No 53
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.0017 Score=57.05 Aligned_cols=94 Identities=9% Similarity=0.065 Sum_probs=59.6
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|||+++... .++.|...+.+....+.+|++|.+.+ +...+ +....+.+..++.++..+.+.+.+-...
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-- 196 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-- 196 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--
Confidence 455589999999664 46777777766666777776664433 33222 4567899999999988887776542211
Q ss_pred CccHHHHHHHHHHHhCCCch
Q 039644 143 DVGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pl 162 (192)
..........|++.++|.+.
T Consensus 197 v~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 197 VPVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 11123344566777777663
No 54
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.001 Score=56.94 Aligned_cols=98 Identities=10% Similarity=0.070 Sum_probs=60.7
Q ss_pred CceEEEEEeCCCCchh--HHHhhccCCCCCCCceEEEEecchh-HHhh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFSQ--LESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~iivTtR~~~-~~~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|||+++.... .+.+...+......+++|++|.+.. +... .+....+.+.+++.++....+...+-...
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-- 195 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-- 195 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--
Confidence 4556899999986543 5556655544445667777775432 1111 13345688889999998888877653222
Q ss_pred CccHHHHHHHHHHHhCCCchHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKV 166 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~ 166 (192)
-.........|++.++|.+.-+..
T Consensus 196 i~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 196 IAYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CCcCHHHHHHHHHHhCCCHHHHHH
Confidence 122344566788888888754433
No 55
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0028 Score=53.66 Aligned_cols=121 Identities=15% Similarity=0.244 Sum_probs=71.1
Q ss_pred CchhHHHHHHHHHhhCCCc--ceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCC
Q 039644 1 IGKTAIARAIFDKISGDFE--CSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVT 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 78 (192)
+|||.|+..+++.+...+. .++++. ..++...+...+... ....+++.+.+- =+|||||+.
T Consensus 325 sGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~-----~~~~f~~~y~~~-DLLlIDDIq 387 (617)
T PRK14086 325 LGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG-----KGDSFRRRYREM-DILLVDDIQ 387 (617)
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc-----cHHHHHHHhhcC-CEEEEehhc
Confidence 6999999999998765443 234443 444554544443321 223344444432 478899997
Q ss_pred Cch---hH-HHhhccCCC-CCCCceEEEEecch---------hHHhhcCCCceEecCCCCHHHHHHHHHHhhcC
Q 039644 79 CFS---QL-ESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYEMEALEYHHALELFSQHAFK 138 (192)
Q Consensus 79 ~~~---~~-~~l~~~~~~-~~~~~~iivTtR~~---------~~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~ 138 (192)
... .| +.|...+.. ...+..||+||... .+...+...-.+.++..+.+.-.+++.+.+-.
T Consensus 388 ~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 388 FLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 431 12 222222211 12356688888753 23333345678899999999999999887643
No 56
>PRK04195 replication factor C large subunit; Provisional
Probab=97.63 E-value=0.0019 Score=53.69 Aligned_cols=141 Identities=14% Similarity=0.186 Sum_probs=76.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+||||+|+.+++++. |+. +-+. .++ ....+.+..++.......+ .+...+-+||||+++..
T Consensus 50 ~GKTtla~ala~el~--~~~-ieln-asd-----~r~~~~i~~~i~~~~~~~s----------l~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 50 VGKTSLAHALANDYG--WEV-IELN-ASD-----QRTADVIERVAGEAATSGS----------LFGARRKLILLDEVDGI 110 (482)
T ss_pred CCHHHHHHHHHHHcC--CCE-EEEc-ccc-----cccHHHHHHHHHHhhccCc----------ccCCCCeEEEEecCccc
Confidence 699999999999873 222 1121 222 1222233333333222111 11135779999999864
Q ss_pred hh------HHHhhccCCCCCCCceEEEEecchhHHh--h-cCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHH
Q 039644 81 SQ------LESLMGSLDWLTPVSRIILTTRNKQVLR--N-WGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSS 151 (192)
Q Consensus 81 ~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~--~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~ 151 (192)
.. +..+...+. ..+..+|+++....-.. . -.....+.+.+++..+....+...+..... ....+...
T Consensus 111 ~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi--~i~~eaL~ 186 (482)
T PRK04195 111 HGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGI--ECDDEALK 186 (482)
T ss_pred ccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHH
Confidence 32 445544433 23345777764432111 1 134567899999999988888776533221 11234566
Q ss_pred HHHHHhCCCchHH
Q 039644 152 NVTKYAQGIPLAL 164 (192)
Q Consensus 152 ~i~~~~~g~Plai 164 (192)
.|++.++|....+
T Consensus 187 ~Ia~~s~GDlR~a 199 (482)
T PRK04195 187 EIAERSGGDLRSA 199 (482)
T ss_pred HHHHHcCCCHHHH
Confidence 6777777665543
No 57
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.63 E-value=0.0037 Score=48.85 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=57.9
Q ss_pred ceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCCC
Q 039644 68 MKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIYEMEALEYHHALELFSQHAFKRNHPD 143 (192)
Q Consensus 68 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~ 143 (192)
.+-++++|+++... ....+...+......+++|+++.... .... ......+.+++++.++....+...+.....
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-- 179 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-- 179 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC--
Confidence 35689999997553 24455544444445567777764322 1111 123457899999999988888876643221
Q ss_pred ccHHHHHHHHHHHhCCCchH
Q 039644 144 VGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 144 ~~~~~~~~~i~~~~~g~Pla 163 (192)
.-..+....+++.++|.+.-
T Consensus 180 ~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 180 EITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred CCCHHHHHHHHHHcCCCHHH
Confidence 12345566778888887665
No 58
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0019 Score=54.18 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=59.3
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++... ..+.+...+......+.+|++|.+.. +... .+....+++++++.++....+...+....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-- 195 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-- 195 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--
Confidence 456699999998654 36667666665555666777664432 1111 12346788999999998877766543211
Q ss_pred CccHHHHHHHHHHHhCCCch
Q 039644 143 DVGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pl 162 (192)
-.........|++.++|.+.
T Consensus 196 i~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 196 IPFDATALQLLARAAAGSMR 215 (527)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 11223445677888888775
No 59
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.0032 Score=50.74 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=76.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||.|+..+++...++.+....+. ....++...++..+..+ ....+++.. .-=++++||++-.
T Consensus 124 lGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~~-----~~~~Fk~~y--~~dlllIDDiq~l 187 (408)
T COG0593 124 LGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRDN-----EMEKFKEKY--SLDLLLIDDIQFL 187 (408)
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHhh-----hHHHHHHhh--ccCeeeechHhHh
Confidence 5999999999998877776444443 24556666666655443 334455555 3338899999742
Q ss_pred h---hH-HHhhccCCC-CCCCceEEEEecch---------hHHhhcCCCceEecCCCCHHHHHHHHHHhhc
Q 039644 81 S---QL-ESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 81 ~---~~-~~l~~~~~~-~~~~~~iivTtR~~---------~~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
. .+ +.+...+.. ...|..||+|++.. ...+.+..+-.+.+.+.+.+....++.+.+-
T Consensus 188 ~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 188 AGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred cCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 1 11 222222211 12344799998542 3334445567899999999999999988654
No 60
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.58 E-value=0.0014 Score=52.45 Aligned_cols=138 Identities=20% Similarity=0.286 Sum_probs=74.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhc-CCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRL-SRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 79 (192)
+|||++|+.+++.....|-.+ . ..++..... +.. ......+.... ...+.+|+||+++.
T Consensus 167 tGKT~lakaia~~l~~~~~~v-----~---------~~~l~~~~~----g~~--~~~i~~~f~~a~~~~p~il~iDEiD~ 226 (364)
T TIGR01242 167 TGKTLLAKAVAHETNATFIRV-----V---------GSELVRKYI----GEG--ARLVREIFELAKEKAPSIIFIDEIDA 226 (364)
T ss_pred CCHHHHHHHHHHhCCCCEEec-----c---------hHHHHHHhh----hHH--HHHHHHHHHHHHhcCCcEEEhhhhhh
Confidence 699999999999876554221 1 111111100 000 00112222222 34678999999974
Q ss_pred ch----------------hHHHhhccCCC--CCCCceEEEEecchhHHhhc-----CCCceEecCCCCHHHHHHHHHHhh
Q 039644 80 FS----------------QLESLMGSLDW--LTPVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 80 ~~----------------~~~~l~~~~~~--~~~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
.. .+..+...+.. ...+..||.||+........ .....+.++..+.++..++|..+.
T Consensus 227 l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~ 306 (364)
T TIGR01242 227 IAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT 306 (364)
T ss_pred hccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH
Confidence 31 12233322222 12456788888754322111 224578899999999999998876
Q ss_pred cCCCCCC-ccHHHHHHHHHHHhCCCch
Q 039644 137 FKRNHPD-VGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 137 ~~~~~~~-~~~~~~~~~i~~~~~g~Pl 162 (192)
....... .. ...+++.+.|..-
T Consensus 307 ~~~~l~~~~~----~~~la~~t~g~sg 329 (364)
T TIGR01242 307 RKMKLAEDVD----LEAIAKMTEGASG 329 (364)
T ss_pred hcCCCCccCC----HHHHHHHcCCCCH
Confidence 4433221 22 3466777777653
No 61
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.57 E-value=0.00018 Score=54.36 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=49.8
Q ss_pred CchhHHHHHHHHHhh-CCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC----c--C----chHHHHhh-cCCc
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV----M--P----YIDLNFRR-LSRM 68 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~--~----~~~~l~~~-l~~~ 68 (192)
+|||||++.+++.+. .+|+..+|+.++.+. +..+.+++..+...+.-...+ . . ........ -.++
T Consensus 27 ~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 103 (249)
T cd01128 27 AGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGK 103 (249)
T ss_pred CCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 699999999999754 479999999855431 257888888883333222111 1 1 22222222 2478
Q ss_pred eEEEEEeCCCCc
Q 039644 69 KVLIVFDDVTCF 80 (192)
Q Consensus 69 ~~LlVlDdv~~~ 80 (192)
+.++++|++...
T Consensus 104 ~vll~iDei~r~ 115 (249)
T cd01128 104 DVVILLDSITRL 115 (249)
T ss_pred CEEEEEECHHHh
Confidence 999999999644
No 62
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.003 Score=52.03 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=59.9
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecc-hhHHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~-~~~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|+|+++... .++.+...+........+|.+|.. ..+...+ +....+.+.+++.++..+.+...+....
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-- 197 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-- 197 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--
Confidence 455699999998654 477777666554445555555544 3222222 4456799999999998888877653222
Q ss_pred CccHHHHHHHHHHHhCCCchH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pla 163 (192)
-.-..+....|++.++|.+.-
T Consensus 198 i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 198 VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred CCCCHHHHHHHHHHcCChHHH
Confidence 122344556677777777644
No 63
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.53 E-value=0.012 Score=46.72 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=62.3
Q ss_pred CceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecchhH-Hhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQV-LRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+.+-++|+|+++.. ...+.+...+......+.+|++|.+... .... +....+++.+++.++..+.+...+-....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~- 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI- 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 34558999999765 3466666666544456667777755442 2222 34567889999999988888776532221
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKVL 167 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~~ 167 (192)
.-.++.+..+++.++|.|..+...
T Consensus 195 -~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 195 -KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred -CCCHHHHHHHHHHcCCChHHHHHH
Confidence 122456667788888887654433
No 64
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.004 Score=52.91 Aligned_cols=100 Identities=9% Similarity=0.064 Sum_probs=62.5
Q ss_pred CceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++.. ...+.|...+........+|++|.+.. +...+ +....+++++++.++....+...+....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-- 195 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-- 195 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC--
Confidence 45669999999865 346677666654445566666665533 22222 3346789999999999888877553221
Q ss_pred CccHHHHHHHHHHHhCCCc-hHHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIP-LALKVLS 168 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~P-lai~~~~ 168 (192)
..-..+.+..|++.++|.+ .|+..+.
T Consensus 196 i~id~eal~lIA~~s~GdlR~Al~lLe 222 (624)
T PRK14959 196 VDYDPAAVRLIARRAAGSVRDSMSLLG 222 (624)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1123445667777788754 4555554
No 65
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.0078 Score=49.83 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=60.7
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++... ..+.+...+......+.+|++|.+.. +.... .....+.+.+++.++....+...+....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-- 193 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-- 193 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--
Confidence 456699999998553 35666666554444455555554422 22222 4557899999999998888887663221
Q ss_pred CccHHHHHHHHHHHhCCC-chHHHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGI-PLALKVLSC 169 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~-Plai~~~~~ 169 (192)
-.-.++....|++.++|. +.|+..+-.
T Consensus 194 i~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 194 IEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 122344556677766544 556555544
No 66
>PRK08116 hypothetical protein; Validated
Probab=97.51 E-value=0.00054 Score=52.46 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=51.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCC--
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVT-- 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-- 78 (192)
+|||.||..+++.+..+...++++. ..+++..+......... .....+...+.+-. ||||||+.
T Consensus 125 tGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~~--~~~~~~~~~l~~~d-lLviDDlg~e 190 (268)
T PRK08116 125 TGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSGK--EDENEIIRSLVNAD-LLILDDLGAE 190 (268)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcccc--ccHHHHHHHhcCCC-EEEEecccCC
Confidence 6999999999998765544445553 34455555444332211 12333445555444 89999994
Q ss_pred CchhHH--HhhccCCC-CCCCceEEEEecch
Q 039644 79 CFSQLE--SLMGSLDW-LTPVSRIILTTRNK 106 (192)
Q Consensus 79 ~~~~~~--~l~~~~~~-~~~~~~iivTtR~~ 106 (192)
...+|. .+...+.. ...+..+|+||...
T Consensus 191 ~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 191 RDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 333332 22222211 23456789998754
No 67
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.49 E-value=0.0049 Score=50.63 Aligned_cols=120 Identities=13% Similarity=0.143 Sum_probs=68.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+|++.+++.+......++++. ..++...+...+... ....++..+++ .-+|++||+...
T Consensus 152 ~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~-----~~~~f~~~~~~-~dvLiIDDiq~l 214 (445)
T PRK12422 152 SGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG-----EMQRFRQFYRN-VDALFIEDIEVF 214 (445)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc-----hHHHHHHHccc-CCEEEEcchhhh
Confidence 6999999999998765433445553 233444444443221 12334444433 347888999743
Q ss_pred hh----HHHhhccCCC-CCCCceEEEEecch---------hHHhhcCCCceEecCCCCHHHHHHHHHHhhc
Q 039644 81 SQ----LESLMGSLDW-LTPVSRIILTTRNK---------QVLRNWGVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 81 ~~----~~~l~~~~~~-~~~~~~iivTtR~~---------~~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
.. .+.+...+.. ...|..||+||... .+...+..+-.+.+++++.++-..++.+.+-
T Consensus 215 ~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 215 SGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred cCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 21 1222221110 12355788888542 1222223456888999999999999888764
No 68
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.46 E-value=0.0012 Score=49.14 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=56.1
Q ss_pred EEEEEeCCCCchh--HHHhhccCCCC-CCCc-eEEEEecchhHHh--------hcCCCceEecCCCCHHHHHHHHHHhhc
Q 039644 70 VLIVFDDVTCFSQ--LESLMGSLDWL-TPVS-RIILTTRNKQVLR--------NWGVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 70 ~LlVlDdv~~~~~--~~~l~~~~~~~-~~~~-~iivTtR~~~~~~--------~~~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
-++|+||++.... -..+...+... ..+. .+|+|++...... .+.....+.+++++.++-..++.+.+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 3799999975422 22232222211 1333 3666665432111 222246789999998877776665432
Q ss_pred CCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 039644 138 KRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCFL 171 (192)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 171 (192)
... -.-.++....+.+.+.|.+..+..+...|
T Consensus 172 ~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 ERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 211 22234566677788899988876666554
No 69
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.45 E-value=0.0042 Score=53.97 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=73.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhc--CCceEEEEEeCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRL--SRMKVLIVFDDVT 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~ 78 (192)
+||||||+.+++.....|.. +. ... ..+.++ ..++.. ....+ .+++.+|+||+++
T Consensus 63 tGKTTLA~aIA~~~~~~f~~---ln---a~~---~~i~di-r~~i~~-------------a~~~l~~~~~~~IL~IDEIh 119 (725)
T PRK13341 63 VGKTTLARIIANHTRAHFSS---LN---AVL---AGVKDL-RAEVDR-------------AKERLERHGKRTILFIDEVH 119 (725)
T ss_pred CCHHHHHHHHHHHhcCccee---eh---hhh---hhhHHH-HHHHHH-------------HHHHhhhcCCceEEEEeChh
Confidence 69999999999987665521 11 100 112221 111111 11111 2356799999998
Q ss_pred Cc--hhHHHhhccCCCCCCCceEEEE--ecchhH--Hh-hcCCCceEecCCCCHHHHHHHHHHhhcC-----CCCCCccH
Q 039644 79 CF--SQLESLMGSLDWLTPVSRIILT--TRNKQV--LR-NWGVSKIYEMEALEYHHALELFSQHAFK-----RNHPDVGY 146 (192)
Q Consensus 79 ~~--~~~~~l~~~~~~~~~~~~iivT--tR~~~~--~~-~~~~~~~~~l~~l~~~ea~~lf~~~~~~-----~~~~~~~~ 146 (192)
.. ...+.+...+. .++.+++. |.+... .. ..+....+.+++++.++...++.+..-. +.....-.
T Consensus 120 ~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~ 196 (725)
T PRK13341 120 RFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE 196 (725)
T ss_pred hCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC
Confidence 54 34556654432 34445553 333221 11 1133567999999999999998876531 01111223
Q ss_pred HHHHHHHHHHhCCCch
Q 039644 147 EKLSSNVTKYAQGIPL 162 (192)
Q Consensus 147 ~~~~~~i~~~~~g~Pl 162 (192)
++....|++.+.|...
T Consensus 197 deaL~~La~~s~GD~R 212 (725)
T PRK13341 197 PEAEKHLVDVANGDAR 212 (725)
T ss_pred HHHHHHHHHhCCCCHH
Confidence 4455667777776533
No 70
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.44 E-value=0.0025 Score=50.42 Aligned_cols=141 Identities=17% Similarity=0.276 Sum_probs=82.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+||||||+.++..-+.+- ..||. .+.+. .+..++. .+.++-.. ...+..++.+|.+|.+..-
T Consensus 173 ~GKTtlArlia~tsk~~S--yrfve-lSAt~---a~t~dvR-~ife~aq~-----------~~~l~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 173 TGKTTLARLIASTSKKHS--YRFVE-LSATN---AKTNDVR-DIFEQAQN-----------EKSLTKRKTILFIDEIHRF 234 (554)
T ss_pred CchHHHHHHHHhhcCCCc--eEEEE-Eeccc---cchHHHH-HHHHHHHH-----------HHhhhcceeEEEeHHhhhh
Confidence 699999999999766542 45555 33322 2233322 22222211 1233567889999999643
Q ss_pred --hhHHHhhccCCCCCCCceEEE--EecchhHHhh---cCCCceEecCCCCHHHHHHHHHHhhc---CCCC-----CC--
Q 039644 81 --SQLESLMGSLDWLTPVSRIIL--TTRNKQVLRN---WGVSKIYEMEALEYHHALELFSQHAF---KRNH-----PD-- 143 (192)
Q Consensus 81 --~~~~~l~~~~~~~~~~~~iiv--TtR~~~~~~~---~~~~~~~~l~~l~~~ea~~lf~~~~~---~~~~-----~~-- 143 (192)
.+-+-| +|...+|+-++| ||.+++.... .+...++-|+.|+.++...++.+..- .+.. +.
T Consensus 235 NksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s 311 (554)
T KOG2028|consen 235 NKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSS 311 (554)
T ss_pred hhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcc
Confidence 333444 455567776666 6777654333 25678999999999999888877332 1111 11
Q ss_pred -ccHHHHHHHHHHHhCCCch
Q 039644 144 -VGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 144 -~~~~~~~~~i~~~~~g~Pl 162 (192)
.-.+.+.+-++..|+|--.
T Consensus 312 ~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 312 MFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hhhhHHHHHHHHHhcCchHH
Confidence 1234455556666777643
No 71
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.013 Score=50.01 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=61.6
Q ss_pred CceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecch-hHHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
..+-++|+|+++.. ...+.|...+.+....+.+|+++.+. .+.... +....+.+..++..+....+.+.+.....
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl- 197 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI- 197 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 45668999999865 34666766655545566676666443 222222 34567889999999988888776543221
Q ss_pred CccHHHHHHHHHHHhCCCchHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALK 165 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~ 165 (192)
....+.+..+++.++|.+..+.
T Consensus 198 -~i~~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 198 -NLEPGALEAIARAATGSMRDAE 219 (585)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHH
Confidence 1223556678888888776443
No 72
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.36 E-value=0.01 Score=50.55 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=62.7
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecc-hhHHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~-~~~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++... ..+.|...+.+....+++|++|.. ..+...+ +....+.+..++.++....+...+-...
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-- 208 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-- 208 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--
Confidence 345589999998654 467777666655566777766633 2222222 4457899999999998888877653221
Q ss_pred CccHHHHHHHHHHHhCCCchHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKV 166 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~ 166 (192)
.....+....|++.++|.+.-+..
T Consensus 209 i~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 209 VEVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 112235566778888887765443
No 73
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0059 Score=49.49 Aligned_cols=96 Identities=10% Similarity=0.106 Sum_probs=61.3
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecc-hhHHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRN-KQVLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~-~~~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+.+-++|+|+++... .++.+...+.+..+.+.+|++|.. ..+.... .....+++.+++.++....+...+-...
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-- 203 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-- 203 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--
Confidence 455689999998654 577777776655566676666533 3333222 3346788999999998887776552211
Q ss_pred CccHHHHHHHHHHHhCCCchHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai 164 (192)
..-.++.+..+++.++|.+--+
T Consensus 204 ~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 204 ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1233556677888888877533
No 74
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.34 E-value=0.00071 Score=54.30 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=51.4
Q ss_pred CchhHHHHHHHHHhhC-CCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC---------chHHHHhh-cCCc
Q 039644 1 IGKTAIARAIFDKISG-DFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP---------YIDLNFRR-LSRM 68 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~---------~~~~l~~~-l~~~ 68 (192)
+|||||++.+++.+.. +|+..+|+.++++ .+..+.+++..++..+.....+ .. ..+..... -.++
T Consensus 179 ~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE---R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~Gk 255 (415)
T TIGR00767 179 AGKTVLLQKIAQAITRNHPEVELIVLLIDE---RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 255 (415)
T ss_pred CChhHHHHHHHHhhcccCCceEEEEEEcCC---CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCC
Confidence 5999999999997654 4999999986533 2357888888885544332222 11 22222222 2578
Q ss_pred eEEEEEeCCCCc
Q 039644 69 KVLIVFDDVTCF 80 (192)
Q Consensus 69 ~~LlVlDdv~~~ 80 (192)
+.+|++|.+...
T Consensus 256 dVVLlIDEitR~ 267 (415)
T TIGR00767 256 DVVILLDSITRL 267 (415)
T ss_pred CeEEEEEChhHH
Confidence 999999999744
No 75
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.031 Score=46.55 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=58.2
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecch-hHHhh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRN-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~-~~~~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++... ..+.+...+......+.+|++|.+. .+... ......+.+.+++.++....+...+-....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi- 196 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI- 196 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 456699999998553 4566666655544455566555432 22222 134567999999999988877775532221
Q ss_pred CccHHHHHHHHHHHhCCCchHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai 164 (192)
....+....+++.++|.+..+
T Consensus 197 -~id~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 197 -EYEEKALDLLAQASEGGMRDA 217 (486)
T ss_pred -CCCHHHHHHHHHHcCCCHHHH
Confidence 122344556777777766543
No 76
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.30 E-value=0.0084 Score=50.78 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=56.9
Q ss_pred ceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecch-hHHhh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCCC
Q 039644 68 MKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRN-WGVSKIYEMEALEYHHALELFSQHAFKRNHPD 143 (192)
Q Consensus 68 ~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~-~~~~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~ 143 (192)
++-++|+|+++.. ..+..+...+......+.+|++|... .+... .+....+++.+++.++....+...+.... .
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg--i 196 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK--I 196 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC--C
Confidence 3447999999865 34666666555444455566555433 22222 24457899999999998888877553221 1
Q ss_pred ccHHHHHHHHHHHhCCCch
Q 039644 144 VGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 144 ~~~~~~~~~i~~~~~g~Pl 162 (192)
.-..+.+..+++.++|.+.
T Consensus 197 ~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 197 KIEDNAIDKIADLADGSLR 215 (605)
T ss_pred CCCHHHHHHHHHHcCCcHH
Confidence 1223446677777887654
No 77
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.019 Score=48.78 Aligned_cols=94 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred CceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|+|+++.. ...+.|...+......+.+|++|.+.. +...+ +....+.+.+++.++..+.+...+.....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi- 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV- 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-
Confidence 34558999999855 346777777666556666666664432 22222 44678999999999988877765532221
Q ss_pred CccHHHHHHHHHHHhCCCch
Q 039644 143 DVGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pl 162 (192)
....+....|++.++|.+.
T Consensus 196 -~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 196 -VVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred -CCCHHHHHHHHHHcCCCHH
Confidence 1123344556667777654
No 78
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.052 Score=42.67 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=62.6
Q ss_pred CceEEEEEeCCCCchh--HHHhhccCCCCCCCceEEEEecchhH-Hhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFSQ--LESLMGSLDWLTPVSRIILTTRNKQV-LRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++.... -..+...+-+-..++.+|++|.+... ...+ +....+.+.+++.+++.+.+.... ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~~- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---VS- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---CC-
Confidence 3456899999997653 56666666655667878888876442 2222 456789999999999888876531 11
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKVL 167 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~~ 167 (192)
...+..++..++|.|+....+
T Consensus 188 ----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 ----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHH
Confidence 222556788999999855443
No 79
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.025 Score=45.28 Aligned_cols=94 Identities=15% Similarity=0.205 Sum_probs=54.3
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecch-hHHhh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRN-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~-~~~~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++++|+++... .++.+...+......+.+|+++... ..... .+....++..+++.++....+...+.....
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~- 185 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI- 185 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-
Confidence 345589999997543 3666655554434455566655332 22211 134467899999999988888775532221
Q ss_pred CccHHHHHHHHHHHhCCCch
Q 039644 143 DVGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pl 162 (192)
.-.++....+++.++|.+-
T Consensus 186 -~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 186 -KFEDDALHIIAQKADGALR 204 (367)
T ss_pred -CCCHHHHHHHHHhCCCCHH
Confidence 1123445556666666544
No 80
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.15 E-value=0.0043 Score=42.00 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=46.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||++++.+++.....-..++++. ..... ...... ...... . ...........++.++++|+++..
T Consensus 30 ~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~----~~~~~~-~~~~~~----~---~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 30 TGKTTLARAIANELFRPGAPFLYLN-ASDLL----EGLVVA-ELFGHF----L---VRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCHHHHHHHHHHHhhcCCCCeEEEe-hhhhh----hhhHHH-HHhhhh----h---HhHHHHhhccCCCeEEEEeChhhh
Confidence 6999999999998754334455554 22211 111111 000000 0 000111222456789999999854
Q ss_pred -----hhHHHhhccCCCC---CCCceEEEEecchh
Q 039644 81 -----SQLESLMGSLDWL---TPVSRIILTTRNKQ 107 (192)
Q Consensus 81 -----~~~~~l~~~~~~~---~~~~~iivTtR~~~ 107 (192)
..+.......... ..+..+|+||....
T Consensus 97 ~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 97 SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 1223322323221 35678888887543
No 81
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.13 E-value=0.018 Score=50.83 Aligned_cols=162 Identities=12% Similarity=0.108 Sum_probs=85.0
Q ss_pred CchhHHHHHHHHHhhCC-----Cc--ceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--cC---chHHHHhhcC--
Q 039644 1 IGKTAIARAIFDKISGD-----FE--CSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--MP---YIDLNFRRLS-- 66 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-----F~--~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~---~~~~l~~~l~-- 66 (192)
+|||++++.|.+++.+. .+ .++++.+..- .....++..|..++....+. .. ....+...+.
T Consensus 792 TGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L-----stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~ 866 (1164)
T PTZ00112 792 TGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV-----VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKD 866 (1164)
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc-----CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcc
Confidence 59999999999865321 22 2345542221 46777888888888544333 22 3334444432
Q ss_pred -CceEEEEEeCCCCch-----hHHHhhccCCCCCCCceEEE--Eecchh--------HHhhcCCCceEecCCCCHHHHHH
Q 039644 67 -RMKVLIVFDDVTCFS-----QLESLMGSLDWLTPVSRIIL--TTRNKQ--------VLRNWGVSKIYEMEALEYHHALE 130 (192)
Q Consensus 67 -~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~iiv--TtR~~~--------~~~~~~~~~~~~l~~l~~~ea~~ 130 (192)
....+||||+++... .+..|... +. ..+++|++ +|.... +...++ ...+..++.+.++..+
T Consensus 867 ~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~-~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~d 943 (1164)
T PTZ00112 867 NRNVSILIIDEIDYLITKTQKVLFTLFDW-PT-KINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEK 943 (1164)
T ss_pred cccceEEEeehHhhhCccHHHHHHHHHHH-hh-ccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHH
Confidence 224699999998432 12222222 11 23445554 332211 111112 2236679999999999
Q ss_pred HHHHhhcCCC--CCCccHHHHHHHHHHHhCCCchHHHHHHHH
Q 039644 131 LFSQHAFKRN--HPDVGYEKLSSNVTKYAQGIPLALKVLSCF 170 (192)
Q Consensus 131 lf~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 170 (192)
++..++.... ..+..++..+..++...|..-.||.++-..
T Consensus 944 ILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 944 IIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 9998875321 122233333333333334445555554433
No 82
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.033 Score=47.66 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=59.2
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecc-hhHHhh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRN-KQVLRN-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~-~~~~~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+.+-++|+|+++... ..+.|...+.+....+.+|++|.. ..+... ......+++.+++.++....+...+-...
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-- 203 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-- 203 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--
Confidence 345588999998654 467777766665555666655543 333222 24567899999999998877766543211
Q ss_pred CccHHHHHHHHHHHhCCCch
Q 039644 143 DVGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pl 162 (192)
..-..+.+..+++.++|..-
T Consensus 204 i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 204 IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred CCCCHHHHHHHHHHhCCCHH
Confidence 11234556677788888554
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.035 Score=46.61 Aligned_cols=96 Identities=10% Similarity=0.124 Sum_probs=60.2
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhHHh-h-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVLR-N-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~~-~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+.+-++|+|+++... ..+.+...+......+++|++|.+..-.. . .+....+++.+++.++....+...+.....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi- 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV- 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 345589999998654 35666666655556677777776542111 1 134578999999999988887765532221
Q ss_pred CccHHHHHHHHHHHhCCCchHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai 164 (192)
....+....|++.++|.+.-+
T Consensus 195 -~i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 195 -SYEPEALEILARSGNGSLRDT 215 (535)
T ss_pred -CCCHHHHHHHHHHcCCcHHHH
Confidence 112345566777777776443
No 84
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.02 E-value=0.048 Score=46.24 Aligned_cols=95 Identities=9% Similarity=0.136 Sum_probs=59.7
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecch-hHHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++... .++.+...+......+.+|.+|... .+.... +....++..+++.++....+...+....
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-- 195 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-- 195 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC--
Confidence 455689999998654 4677777766555666676666443 222222 4456789999999998888776653222
Q ss_pred CccHHHHHHHHHHHhCCCchH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pla 163 (192)
-....+....|++.++|.+..
T Consensus 196 i~id~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 196 IKYEDEALKWIAYKSTGSVRD 216 (563)
T ss_pred CCCCHHHHHHHHHHcCCCHHH
Confidence 122344555677777776643
No 85
>PRK06620 hypothetical protein; Validated
Probab=97.00 E-value=0.0083 Score=44.41 Aligned_cols=90 Identities=8% Similarity=0.002 Sum_probs=52.4
Q ss_pred EEEEEeCCCCchh--HHHhhccCCCCCCCceEEEEecchhH-------HhhcCCCceEecCCCCHHHHHHHHHHhhcCCC
Q 039644 70 VLIVFDDVTCFSQ--LESLMGSLDWLTPVSRIILTTRNKQV-------LRNWGVSKIYEMEALEYHHALELFSQHAFKRN 140 (192)
Q Consensus 70 ~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~iivTtR~~~~-------~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~ 140 (192)
-++++||++..++ +-.+...+. ..|..+|+|++.... ...+...-++.+++++.++-..++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 3788999985443 222222222 345689998875332 22233455799999999988888877664221
Q ss_pred CCCccHHHHHHHHHHHhCCCchH
Q 039644 141 HPDVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 141 ~~~~~~~~~~~~i~~~~~g~Pla 163 (192)
-.-.++...-|++.+.|.--.
T Consensus 165 --l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 165 --VTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred --CCCCHHHHHHHHHHccCCHHH
Confidence 122344555666666655444
No 86
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.99 E-value=0.05 Score=44.92 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=57.6
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecch-hHHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNK-QVLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~-~~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+.+-++|+|+++... ..+.+...+.+....+.+|++|... .+.... +....+++++++.++....+...+-...
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-- 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-- 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 456689999998553 3566666655545566677666432 222221 3457899999999998887776543211
Q ss_pred CccHHHHHHHHHHHhCCCch
Q 039644 143 DVGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pl 162 (192)
-...++.+..+++.++|.+.
T Consensus 198 ~~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 198 IETSREALLPIARAAQGSLR 217 (451)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 11233455667777777553
No 87
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.052 Score=46.55 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=60.0
Q ss_pred ceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEec-chhHHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCCC
Q 039644 68 MKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTR-NKQVLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHPD 143 (192)
Q Consensus 68 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR-~~~~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~ 143 (192)
.+-++|+|+++... .++.|...+......+.+|++|. ...+.... +....+++++++.++....+...+.....
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-- 198 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-- 198 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--
Confidence 45588999998654 46777776666556666666553 33333322 45678999999999998888765532221
Q ss_pred ccHHHHHHHHHHHhCCCchH
Q 039644 144 VGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 144 ~~~~~~~~~i~~~~~g~Pla 163 (192)
....+.+..|++.++|...-
T Consensus 199 ~i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 199 TAEPEALNVIAQKADGGMRD 218 (614)
T ss_pred CCCHHHHHHHHHHcCCCHHH
Confidence 12234556777777776543
No 88
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.032 Score=47.47 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=56.1
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|+|+++... ..+.|...+.+....+.+|++|.+.. +.... +....+++.+++.++....+...+....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-- 195 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-- 195 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--
Confidence 345589999998654 46677666655555666776654432 33222 4456788999999888877766442211
Q ss_pred CccHHHHHHHHHHHhCCCc
Q 039644 143 DVGYEKLSSNVTKYAQGIP 161 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~P 161 (192)
-.-..+....+++.++|..
T Consensus 196 i~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 196 ISISDAALALVARKGDGSM 214 (576)
T ss_pred CCCCHHHHHHHHHHcCCCH
Confidence 1112344555666666654
No 89
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.12 Score=41.59 Aligned_cols=130 Identities=13% Similarity=0.187 Sum_probs=80.4
Q ss_pred CchhHHHHHHHHHhhCCCcc--eEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-c---CchHHHHhhcC--CceEEE
Q 039644 1 IGKTAIARAIFDKISGDFEC--SCFLENVREESQRPGGLACLRQKLLSNILKDKNV-M---PYIDLNFRRLS--RMKVLI 72 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~l~~~l~--~~~~Ll 72 (192)
+|||+.++.+++++.+.... .+++.+... .....++..++..+..-... . +....+.+.+. ++..++
T Consensus 53 TGKT~~~~~v~~~l~~~~~~~~~~yINc~~~-----~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~Iv 127 (366)
T COG1474 53 TGKTATVKFVMEELEESSANVEVVYINCLEL-----RTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIV 127 (366)
T ss_pred CCHhHHHHHHHHHHHhhhccCceEEEeeeeC-----CCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEE
Confidence 59999999999987655432 466653222 68889999999988633322 2 25566666664 578999
Q ss_pred EEeCCCCchh-----HHHhhccCCCCCCCceEEE--EecchhHHhhc--------CCCceEecCCCCHHHHHHHHHHhhc
Q 039644 73 VFDDVTCFSQ-----LESLMGSLDWLTPVSRIIL--TTRNKQVLRNW--------GVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 73 VlDdv~~~~~-----~~~l~~~~~~~~~~~~iiv--TtR~~~~~~~~--------~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
|||+++.... +..+....... .++|++ .+......... +. ..+..+|-+.+|..+++..++-
T Consensus 128 vLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 128 ILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred EEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHH
Confidence 9999985422 22332221111 343333 34333222222 22 3378899999999999988764
Q ss_pred C
Q 039644 138 K 138 (192)
Q Consensus 138 ~ 138 (192)
.
T Consensus 205 ~ 205 (366)
T COG1474 205 E 205 (366)
T ss_pred h
Confidence 3
No 90
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.068 Score=45.89 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=59.4
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+.+-++|+|+++... .++.|...+......+.+|++|.+.. +...+ +....+.+..++.++....+.+.+.....
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi- 198 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI- 198 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-
Confidence 345589999998654 46677666655445566666655432 22222 44577888999998888777765533211
Q ss_pred CccHHHHHHHHHHHhCCCchHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALK 165 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~ 165 (192)
....+....+++.++|.+..+.
T Consensus 199 -~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 199 -EIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHH
Confidence 1123446677788888765443
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.066 Score=46.51 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=57.6
Q ss_pred CceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecc-hhHHhh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRN-KQVLRN-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~-~~~~~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++.. ..+..+...+-.....+.+|++|.. ..+... .+....+.+.+++.++....+...+-...
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-- 194 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-- 194 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--
Confidence 45568999999855 3467776665554445555555543 333322 24457899999999998887776542211
Q ss_pred CccHHHHHHHHHHHhCCCch
Q 039644 143 DVGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pl 162 (192)
-....+.+..+++.++|.+.
T Consensus 195 I~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 195 ISYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 11123445667777777654
No 92
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.92 E-value=0.012 Score=39.35 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||++|+.+++.+.
T Consensus 9 ~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 9 TGKTTLARALAQYLG 23 (132)
T ss_dssp SSHHHHHHHHHHHTT
T ss_pred CCeeHHHHHHHhhcc
Confidence 699999999999985
No 93
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.91 E-value=0.013 Score=45.33 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=59.2
Q ss_pred EEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhHHhhc--CCCceEecCCCCHHHHHHHHHHhhcCCCCCCccH
Q 039644 71 LIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVLRNW--GVSKIYEMEALEYHHALELFSQHAFKRNHPDVGY 146 (192)
Q Consensus 71 LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~--~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~ 146 (192)
.+|||+++++. .|..+...+.+....+++++.+......... +....+..++|..++...-++..+.... -+-.
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~--v~~d 209 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG--VDID 209 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC--CCCC
Confidence 79999999774 4888877777667777777776553322111 3345688999999998888888764322 2233
Q ss_pred HHHHHHHHHHhCCC
Q 039644 147 EKLSSNVTKYAQGI 160 (192)
Q Consensus 147 ~~~~~~i~~~~~g~ 160 (192)
++..+.|++.++|.
T Consensus 210 ~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 210 DDALKLIAKISDGD 223 (346)
T ss_pred HHHHHHHHHHcCCc
Confidence 45566677777665
No 94
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.90 E-value=0.014 Score=44.57 Aligned_cols=69 Identities=7% Similarity=0.089 Sum_probs=40.5
Q ss_pred EEEEEeCCCCc----------hhHHHhhccCCCCCCCceEEEEecchhHHh--------hcCCCceEecCCCCHHHHHHH
Q 039644 70 VLIVFDDVTCF----------SQLESLMGSLDWLTPVSRIILTTRNKQVLR--------NWGVSKIYEMEALEYHHALEL 131 (192)
Q Consensus 70 ~LlVlDdv~~~----------~~~~~l~~~~~~~~~~~~iivTtR~~~~~~--------~~~~~~~~~l~~l~~~ea~~l 131 (192)
.+|++|+++.. ...+.+...+........+++++....... .......+.+++++.++..++
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~I 186 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEI 186 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHH
Confidence 58999999752 234445444444333444555543322110 011235688999999999999
Q ss_pred HHHhhcC
Q 039644 132 FSQHAFK 138 (192)
Q Consensus 132 f~~~~~~ 138 (192)
+.+.+..
T Consensus 187 l~~~~~~ 193 (261)
T TIGR02881 187 AERMVKE 193 (261)
T ss_pred HHHHHHH
Confidence 9877643
No 95
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.83 E-value=0.077 Score=45.06 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=57.1
Q ss_pred CceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|+|+++.. ..+..+...+......+.+|++|.... +...+ +....+...+++.++....+...+-....
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi- 196 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI- 196 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 45568899999865 346777666655444555665554332 22221 34567889999999988888775532221
Q ss_pred CccHHHHHHHHHHHhCCCchH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pla 163 (192)
....+....|++.++|.+..
T Consensus 197 -~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 197 -EYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred -CCCHHHHHHHHHHcCCCHHH
Confidence 11234455666667666543
No 96
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.81 E-value=0.024 Score=44.31 Aligned_cols=66 Identities=12% Similarity=0.215 Sum_probs=38.6
Q ss_pred ceEEEEEeCCCCc--hh-HHHhhccCCCCCCCceEEEEecchhHHhh-c-CCCceEecCCCCHHHHHHHHH
Q 039644 68 MKVLIVFDDVTCF--SQ-LESLMGSLDWLTPVSRIILTTRNKQVLRN-W-GVSKIYEMEALEYHHALELFS 133 (192)
Q Consensus 68 ~~~LlVlDdv~~~--~~-~~~l~~~~~~~~~~~~iivTtR~~~~~~~-~-~~~~~~~l~~l~~~ea~~lf~ 133 (192)
.+-++|+|+++.. .. ...+...+.....++++|+||........ . +....+.++..+.++..+++.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHH
Confidence 4568999999855 22 23333323334567788888865432111 1 334567777778777766544
No 97
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.80 E-value=0.0067 Score=46.44 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=48.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh--------cCCCC--cC------chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL--------KDKNV--MP------YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~--~~------~~~~l~~~ 64 (192)
+|||+|+.++++.++.+|...+++..+++.. ..+.++...+...-. ...++ .. ..-.+.++
T Consensus 80 ~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~---~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEy 156 (274)
T cd01133 80 VGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEY 156 (274)
T ss_pred CChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5999999999999887887777766554421 345666666544211 01111 00 22223444
Q ss_pred c---CCceEEEEEeCCCCch
Q 039644 65 L---SRMKVLIVFDDVTCFS 81 (192)
Q Consensus 65 l---~~~~~LlVlDdv~~~~ 81 (192)
+ .+++.|+++||+....
T Consensus 157 fr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 157 FRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred HHHhcCCeEEEEEeChhHHH
Confidence 4 3789999999997554
No 98
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.77 E-value=0.034 Score=47.72 Aligned_cols=111 Identities=13% Similarity=0.019 Sum_probs=61.3
Q ss_pred chHHHHhhcCCceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEE--EecchhHHhh-c-CCCceEecCCCCHHHHHH
Q 039644 57 YIDLNFRRLSRMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIIL--TTRNKQVLRN-W-GVSKIYEMEALEYHHALE 130 (192)
Q Consensus 57 ~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iiv--TtR~~~~~~~-~-~~~~~~~l~~l~~~ea~~ 130 (192)
.+..+...+.+++++++-|+.|... .|+.+...+....+...+++ ||++...... . +....+.+.+++.++...
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 4566777777777777766665432 35555544444334444444 4554331111 1 233567899999999999
Q ss_pred HHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHH
Q 039644 131 LFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSC 169 (192)
Q Consensus 131 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 169 (192)
++...+..... .-..+....|.+.+..-+.|+..++.
T Consensus 361 Il~~~a~~~~v--~ls~eal~~L~~ys~~gRraln~L~~ 397 (615)
T TIGR02903 361 IVLNAAEKINV--HLAAGVEELIARYTIEGRKAVNILAD 397 (615)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHCCCcHHHHHHHHHH
Confidence 99987643211 11233344444444444566665543
No 99
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.75 E-value=0.023 Score=42.24 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=41.9
Q ss_pred eEEEEecchhHHhhc--CCCceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 039644 98 RIILTTRNKQVLRNW--GVSKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVLS 168 (192)
Q Consensus 98 ~iivTtR~~~~~~~~--~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 168 (192)
-|=-|||.-.+..+. ...-..+++..+.+|-..+..+.+..-+ -+...+.+.+|++.+.|-|.-..-+-
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 344577765444443 2234567999999999999988764332 34456778899999999996444333
No 100
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.74 E-value=0.044 Score=44.35 Aligned_cols=91 Identities=21% Similarity=0.330 Sum_probs=51.7
Q ss_pred CceEEEEEeCCCCch------------h----HHHhhccCCCC--CCCceEEEEecchhHHhhc-----CCCceEecCCC
Q 039644 67 RMKVLIVFDDVTCFS------------Q----LESLMGSLDWL--TPVSRIILTTRNKQVLRNW-----GVSKIYEMEAL 123 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~------------~----~~~l~~~~~~~--~~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l 123 (192)
..+.+|+||+++... . +..+...+... ..+..||.||......... .....+.++..
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 467899999997531 1 12222222221 2355677777654322211 12457889999
Q ss_pred CHHHHHHHHHHhhcCCCCC-CccHHHHHHHHHHHhCCCc
Q 039644 124 EYHHALELFSQHAFKRNHP-DVGYEKLSSNVTKYAQGIP 161 (192)
Q Consensus 124 ~~~ea~~lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 161 (192)
+.++-.++|..+......+ ... ...+++.+.|+-
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 9999999998876433221 122 345666666654
No 101
>PRK08181 transposase; Validated
Probab=96.69 E-value=0.0069 Score=46.40 Aligned_cols=89 Identities=20% Similarity=0.132 Sum_probs=45.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||.||..+++....+...++|+. ..+++..+...... . ....+...+. +.-||||||+...
T Consensus 117 tGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~~--~---~~~~~l~~l~-~~dLLIIDDlg~~ 179 (269)
T PRK08181 117 GGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARRE--L---QLESAIAKLD-KFDLLILDDLAYV 179 (269)
T ss_pred CcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHhC--C---cHHHHHHHHh-cCCEEEEeccccc
Confidence 6999999999997655544455554 34455444332211 1 1112222222 3349999999633
Q ss_pred --hhH--HHhhccCCCCCCCceEEEEecch
Q 039644 81 --SQL--ESLMGSLDWLTPVSRIILTTRNK 106 (192)
Q Consensus 81 --~~~--~~l~~~~~~~~~~~~iivTtR~~ 106 (192)
..+ ..+...+...-.+..+||||...
T Consensus 180 ~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 180 TKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 111 12222222111123588888764
No 102
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.22 Score=39.24 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=62.7
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+..=++|+|+++... ..+.+...+-+-..++.+|++|.+.. +...+ +....+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~-- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I-- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--
Confidence 345589999999764 46777776666667788888777654 33333 556789999999999988876531 1
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKVL 167 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~~ 167 (192)
+ ....++..++|.|+...-+
T Consensus 182 ~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1245678899999865443
No 103
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.18 Score=39.68 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=60.0
Q ss_pred CceEEEEEeCCCCchh--HHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFSQ--LESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+.+-++|+|+++.... .+.+...+-... .+.+|++|.+.. +...+ +....+++.+++.++..+.+........
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-- 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-- 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--
Confidence 4566999999986643 566665555444 455666665543 22222 5568899999999999999887642111
Q ss_pred CccHHHHHHHHHHHhCCCchHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKV 166 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~ 166 (192)
.......++..++|.|..+..
T Consensus 200 ---~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 200 ---LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ---chhHHHHHHHHcCCCHHHHHH
Confidence 111134678888888865443
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.65 E-value=0.055 Score=41.86 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=41.8
Q ss_pred eEEEEEeCCCCc-----------hhHHHhhccCCCCCCCceEEEEecchhHHhh--c------CCCceEecCCCCHHHHH
Q 039644 69 KVLIVFDDVTCF-----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRN--W------GVSKIYEMEALEYHHAL 129 (192)
Q Consensus 69 ~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~--~------~~~~~~~l~~l~~~ea~ 129 (192)
.-+|+||++... ...+.+...+.....+.+||.++........ . .....+.+++++.+|..
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 368999999732 1234455444444455566666543221111 0 12456899999999999
Q ss_pred HHHHHhhc
Q 039644 130 ELFSQHAF 137 (192)
Q Consensus 130 ~lf~~~~~ 137 (192)
.++....-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99887653
No 105
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.63 E-value=0.04 Score=49.00 Aligned_cols=104 Identities=14% Similarity=0.154 Sum_probs=63.9
Q ss_pred CceEEEEEeCCCC-----chhHHHhhccCCCCC-CCceEEE--Eecch--hHHhhcCCCceEecCCCCHHHHHHHHHHhh
Q 039644 67 RMKVLIVFDDVTC-----FSQLESLMGSLDWLT-PVSRIIL--TTRNK--QVLRNWGVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 67 ~~~~LlVlDdv~~-----~~~~~~l~~~~~~~~-~~~~iiv--TtR~~--~~~~~~~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
.++.++|+||+.- .+-++.+........ ..+.|.. |.+.. .+.......+.+.|.||+..+...+.....
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 4699999999952 122344433332000 0112222 22222 122222345789999999999999998876
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhcc
Q 039644 137 FKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCFLHK 173 (192)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~ 173 (192)
.... ....+....|+++..|+|+=+.-+-..|..
T Consensus 233 ~~~~---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 233 GCTK---LLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred CCcc---cccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 4422 234456778999999999988887776655
No 106
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.25 Score=39.00 Aligned_cols=89 Identities=12% Similarity=0.166 Sum_probs=60.9
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++=++|+|+++... ....+...+-+-..++.+|++|.+.. +...+ +....+.+.+++.+++.+.+...... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~--~- 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA--E- 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc--C-
Confidence 455688999999765 36677776766667778888887654 22222 45678999999999998888765311 1
Q ss_pred CccHHHHHHHHHHHhCCCch
Q 039644 143 DVGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pl 162 (192)
...+...+..++|.|+
T Consensus 183 ----~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 183 ----ISEILTALRINYGRPL 198 (325)
T ss_pred ----hHHHHHHHHHcCCCHH
Confidence 1124456777888886
No 107
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.17 Score=40.07 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=61.6
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+.+=++|+|+++.+. ....+...+-+-..++.+|++|.+.. +...+ +....+.+.+++.+++.+.+....+ .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~--~-- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT--M-- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC--C--
Confidence 456689999999765 36777776766667788888887654 33232 4456789999999998887754321 1
Q ss_pred CccHHHHHHHHHHHhCCCchH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pla 163 (192)
..+.+..++..++|.|..
T Consensus 183 ---~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 183 ---SQDALLAALRLSAGAPGA 200 (334)
T ss_pred ---CHHHHHHHHHHcCCCHHH
Confidence 122355678889999863
No 108
>CHL00176 ftsH cell division protein; Validated
Probab=96.55 E-value=0.1 Score=44.98 Aligned_cols=97 Identities=11% Similarity=0.195 Sum_probs=53.6
Q ss_pred HHhhcCCceEEEEEeCCCCch------------h----HHHhhccCCCC--CCCceEEEEecchhHHhhc-----CCCce
Q 039644 61 NFRRLSRMKVLIVFDDVTCFS------------Q----LESLMGSLDWL--TPVSRIILTTRNKQVLRNW-----GVSKI 117 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~------------~----~~~l~~~~~~~--~~~~~iivTtR~~~~~~~~-----~~~~~ 117 (192)
+.......+++|+||+++... . +..+...+... ..+..||.+|......... .....
T Consensus 268 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~ 347 (638)
T CHL00176 268 FKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQ 347 (638)
T ss_pred HHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceE
Confidence 333445678999999996431 1 23333333222 2344566666554322211 12467
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCC
Q 039644 118 YEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGI 160 (192)
Q Consensus 118 ~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 160 (192)
+.++..+.++-.++++.+..... .........+.+.+.|+
T Consensus 348 I~v~lPd~~~R~~IL~~~l~~~~---~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 348 ITVSLPDREGRLDILKVHARNKK---LSPDVSLELIARRTPGF 387 (638)
T ss_pred EEECCCCHHHHHHHHHHHHhhcc---cchhHHHHHHHhcCCCC
Confidence 78888888888888887764321 11223345666666664
No 109
>CHL00181 cbbX CbbX; Provisional
Probab=96.52 E-value=0.16 Score=39.42 Aligned_cols=68 Identities=7% Similarity=0.088 Sum_probs=42.1
Q ss_pred EEEEEeCCCCc-----------hhHHHhhccCCCCCCCceEEEEecchhHHh--------hcCCCceEecCCCCHHHHHH
Q 039644 70 VLIVFDDVTCF-----------SQLESLMGSLDWLTPVSRIILTTRNKQVLR--------NWGVSKIYEMEALEYHHALE 130 (192)
Q Consensus 70 ~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~iivTtR~~~~~~--------~~~~~~~~~l~~l~~~ea~~ 130 (192)
-+|+||++... ...+.+...+.....+..||.++....+.. .......+..++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999742 123444444444445566666665333211 11234579999999999999
Q ss_pred HHHHhhc
Q 039644 131 LFSQHAF 137 (192)
Q Consensus 131 lf~~~~~ 137 (192)
++...+-
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9887764
No 110
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.15 Score=40.34 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=48.1
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHh
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQH 135 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~ 135 (192)
+.+=++|+|+++... ..+.+...+.+...++.+|++|.+.. +.... +....+++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 345579999998654 36677777766667777888876644 22222 45678999999999987777643
No 111
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.51 E-value=0.017 Score=48.24 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=42.2
Q ss_pred CceEEEEEeCCCCc---------hh-----HHHhhccCCCCC--CCceEEEEecchhHHhhc-----CCCceEecCCCCH
Q 039644 67 RMKVLIVFDDVTCF---------SQ-----LESLMGSLDWLT--PVSRIILTTRNKQVLRNW-----GVSKIYEMEALEY 125 (192)
Q Consensus 67 ~~~~LlVlDdv~~~---------~~-----~~~l~~~~~~~~--~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~ 125 (192)
+.+++|+||+++.. .+ ...+...+.... .+..||.||......... .....+.++..+.
T Consensus 288 g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 288 GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 46899999999742 11 223433333222 334455566554332211 1245689999999
Q ss_pred HHHHHHHHHhh
Q 039644 126 HHALELFSQHA 136 (192)
Q Consensus 126 ~ea~~lf~~~~ 136 (192)
++..++|..+.
T Consensus 368 e~r~~Il~~~l 378 (512)
T TIGR03689 368 EAAADIFSKYL 378 (512)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 112
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.46 E-value=0.008 Score=42.26 Aligned_cols=118 Identities=17% Similarity=0.094 Sum_probs=58.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh----cC------CCCcC-------chHHHHh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL----KD------KNVMP-------YIDLNFR 63 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~----~~------~~~~~-------~~~~l~~ 63 (192)
.||||+|...+-+...+=..+.++..+... .. ..-..+++.+- .+. +. .+..+ ..+..++
T Consensus 13 ~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~-~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~a~~~~~~a~~ 89 (159)
T cd00561 13 KGKTTAALGLALRALGHGYRVGVVQFLKGG-WK-YGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAAAAEGWAFAKE 89 (159)
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-Cc-cCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 499999999999754443344444333321 00 22223332220 000 00 00001 3334444
Q ss_pred hcCCceE-EEEEeCCCCc-----hhHHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecC
Q 039644 64 RLSRMKV-LIVFDDVTCF-----SQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEME 121 (192)
Q Consensus 64 ~l~~~~~-LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~ 121 (192)
.+....| |+|||.+..- -..+.+...+.....+..+|+|.|+..-.-..-...+.+|.
T Consensus 90 ~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~ 153 (159)
T cd00561 90 AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMR 153 (159)
T ss_pred HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecc
Confidence 5555444 9999999532 12344444444444567899999986533332233344443
No 113
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.44 E-value=0.059 Score=43.75 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=52.7
Q ss_pred CCceEEEEEeCCCCch------------h----HHHhhccCCC--CCCCceEEEEecchhHHhhc-----CCCceEecCC
Q 039644 66 SRMKVLIVFDDVTCFS------------Q----LESLMGSLDW--LTPVSRIILTTRNKQVLRNW-----GVSKIYEMEA 122 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~------------~----~~~l~~~~~~--~~~~~~iivTtR~~~~~~~~-----~~~~~~~l~~ 122 (192)
...+++|+||+++... . +..+...+.. ...+..||.||......... .....+.++.
T Consensus 236 ~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~ 315 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 315 (398)
T ss_pred hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCC
Confidence 4578999999986320 1 2233332322 12455678888765433221 2245688888
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHHhCCCchH
Q 039644 123 LEYHHALELFSQHAFKRN-HPDVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 123 l~~~ea~~lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla 163 (192)
.+.++...+|........ .++.. ...+++.+.|+.-|
T Consensus 316 P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~sga 353 (398)
T PTZ00454 316 PDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKISAA 353 (398)
T ss_pred cCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCCHH
Confidence 888888888876653222 11222 34566667666444
No 114
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.43 E-value=0.16 Score=39.41 Aligned_cols=160 Identities=12% Similarity=0.100 Sum_probs=87.6
Q ss_pred CchhHHHHHHHHHhhCCCc------ceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC---chHHHHhhcCC-ce
Q 039644 1 IGKTAIARAIFDKISGDFE------CSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP---YIDLNFRRLSR-MK 69 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~------~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~l~~~l~~-~~ 69 (192)
+|||++++.++......++ .++.+. ..+ .++...++..|+..++..... .. ......+.++. +-
T Consensus 72 nGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-~P~----~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~v 146 (302)
T PF05621_consen 72 NGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-MPP----EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGV 146 (302)
T ss_pred CcHHHHHHHHHHHCCCCCCCCCccccEEEEe-cCC----CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999986544443 233333 222 279999999999999866544 22 23333445543 45
Q ss_pred EEEEEeCCCCch-----hHHHhhc---cCCCCCCCceEEEEecchhHHhhc-----CCCceEecCCCCHHHHH-HHHHHh
Q 039644 70 VLIVFDDVTCFS-----QLESLMG---SLDWLTPVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHAL-ELFSQH 135 (192)
Q Consensus 70 ~LlVlDdv~~~~-----~~~~l~~---~~~~~~~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~~ea~-~lf~~~ 135 (192)
-+||+|.+.+.- +-..+.. .+-+.-.-+-|.+-|+.-.-+... +....+.++....++-. .|+...
T Consensus 147 rmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~ 226 (302)
T PF05621_consen 147 RMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASF 226 (302)
T ss_pred cEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHH
Confidence 689999997531 1112211 122222334455555442222111 12345667766655433 333221
Q ss_pred h---cCCCCCCccHHHHHHHHHHHhCCCchHHH
Q 039644 136 A---FKRNHPDVGYEKLSSNVTKYAQGIPLALK 165 (192)
Q Consensus 136 ~---~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 165 (192)
. .-.....-...+++..|...++|+.=-+.
T Consensus 227 e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 227 ERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 1 11112234456788999999999865443
No 115
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.32 E-value=0.019 Score=45.84 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=47.9
Q ss_pred CchhHHHHHHHHHhhCCC-cce-EEEeeccccccCCCChHHHHHHHHHHHhcCCCC---cC------chHHHHhhc--CC
Q 039644 1 IGKTAIARAIFDKISGDF-ECS-CFLENVREESQRPGGLACLRQKLLSNILKDKNV---MP------YIDLNFRRL--SR 67 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F-~~~-~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~------~~~~l~~~l--~~ 67 (192)
+|||||++.+++.+.... +.. +|+. +.+ .+..+.++...+...+.....+ .. ....+.+++ .+
T Consensus 144 tGKTTLl~~la~~i~~~~~dv~~vv~l-IgE---R~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~G 219 (380)
T PRK12608 144 AGKTVLLQQIAAAVAANHPEVHLMVLL-IDE---RPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQG 219 (380)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEE-ecC---CCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 699999999999876544 333 3433 322 2367889998888776654322 11 222233333 47
Q ss_pred ceEEEEEeCCCC
Q 039644 68 MKVLIVFDDVTC 79 (192)
Q Consensus 68 ~~~LlVlDdv~~ 79 (192)
++.+||+|++..
T Consensus 220 kdVVLvlDsltr 231 (380)
T PRK12608 220 KDVVILLDSLTR 231 (380)
T ss_pred CCEEEEEeCcHH
Confidence 899999999953
No 116
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.28 E-value=0.099 Score=43.73 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=49.8
Q ss_pred CCceEEEEEeCCCCch------------h----HHHhhccCCCC--CCCceEEEEecchhHHhh-----cCCCceEecCC
Q 039644 66 SRMKVLIVFDDVTCFS------------Q----LESLMGSLDWL--TPVSRIILTTRNKQVLRN-----WGVSKIYEMEA 122 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~------------~----~~~l~~~~~~~--~~~~~iivTtR~~~~~~~-----~~~~~~~~l~~ 122 (192)
...+++|+||+++... . ...+...+... ..+..||.||........ ......+.++.
T Consensus 145 ~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 145 KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDL 224 (495)
T ss_pred hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCC
Confidence 4567899999996421 1 12232222221 233445556655431111 12346788888
Q ss_pred CCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCc
Q 039644 123 LEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIP 161 (192)
Q Consensus 123 l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 161 (192)
.+.++-.++|..+....... . ......+++.+.|+-
T Consensus 225 Pd~~~R~~il~~~l~~~~~~-~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 225 PDIKGREEILKVHAKNKKLA-P--DVDLKAVARRTPGFS 260 (495)
T ss_pred CCHHHHHHHHHHHHhcCCCC-c--chhHHHHHHhCCCCC
Confidence 88888888888765332211 1 112346777777654
No 117
>PRK12377 putative replication protein; Provisional
Probab=96.24 E-value=0.024 Score=42.92 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=46.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC-
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC- 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~- 79 (192)
+|||+||..+++.+......++++. ..+++..+-...... . ....+.+.+ .+.-||||||+..
T Consensus 112 tGKThLa~AIa~~l~~~g~~v~~i~-----------~~~l~~~l~~~~~~~-~---~~~~~l~~l-~~~dLLiIDDlg~~ 175 (248)
T PRK12377 112 TGKNHLAAAIGNRLLAKGRSVIVVT-----------VPDVMSRLHESYDNG-Q---SGEKFLQEL-CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEE-----------HHHHHHHHHHHHhcc-c---hHHHHHHHh-cCCCEEEEcCCCCC
Confidence 6999999999998766555556664 334444443333211 1 111223333 3455899999942
Q ss_pred -chhHH--HhhccCCC-CCCCceEEEEecc
Q 039644 80 -FSQLE--SLMGSLDW-LTPVSRIILTTRN 105 (192)
Q Consensus 80 -~~~~~--~l~~~~~~-~~~~~~iivTtR~ 105 (192)
...|. .+...+.. .....-+|+||..
T Consensus 176 ~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 176 RETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 22332 22222221 1223347778764
No 118
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.26 Score=39.16 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=58.8
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++.-++|+|+++... ..+.+...+-+-..++.+|++|.+.. +...+ +....+.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---VA- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---CC-
Confidence 345589999999764 47777777776667777777776644 33232 455789999999999998886641 11
Q ss_pred CccHHHHHHHHHHHhCCCchHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLAL 164 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai 164 (192)
+ ...++..++|.|+..
T Consensus 207 -~-----~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 207 -D-----ADALLAEAGGAPLAA 222 (342)
T ss_pred -h-----HHHHHHHcCCCHHHH
Confidence 1 123466778888643
No 119
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.11 E-value=0.35 Score=42.57 Aligned_cols=76 Identities=11% Similarity=0.168 Sum_probs=38.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-c--CchHHHHhhcCCce-EEEEEeC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-M--PYIDLNFRRLSRMK-VLIVFDD 76 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~--~~~~~l~~~l~~~~-~LlVlDd 76 (192)
+|||+||+.++..+.. ..+.++ +++.... .... .+.+..+. . +....+.+.++.++ .+++||+
T Consensus 495 vGKT~lA~~la~~l~~---~~~~~d-~se~~~~-~~~~--------~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDE 561 (731)
T TIGR02639 495 VGKTELAKQLAEALGV---HLERFD-MSEYMEK-HTVS--------RLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDE 561 (731)
T ss_pred ccHHHHHHHHHHHhcC---CeEEEe-Cchhhhc-ccHH--------HHhcCCCCCcccchhhHHHHHHHhCCCeEEEEec
Confidence 6999999999997732 234444 3332111 1111 12222221 1 12223444444444 5999999
Q ss_pred CCCch--hHHHhhcc
Q 039644 77 VTCFS--QLESLMGS 89 (192)
Q Consensus 77 v~~~~--~~~~l~~~ 89 (192)
++..+ .++.|...
T Consensus 562 ieka~~~~~~~Ll~~ 576 (731)
T TIGR02639 562 IEKAHPDIYNILLQV 576 (731)
T ss_pred hhhcCHHHHHHHHHh
Confidence 98543 34444443
No 120
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.11 E-value=0.071 Score=37.63 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=35.4
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhH-Hhhc-CCCceEecCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQV-LRNW-GVSKIYEMEALE 124 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~-~~~~-~~~~~~~l~~l~ 124 (192)
+..=++|||+++... ....++..+-....++.+|++|++... .... +....+.+.+++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 345689999999764 366776666666678899999887653 2222 555667776653
No 121
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.11 E-value=0.05 Score=44.66 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=62.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHH-HHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDL-NFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~ 79 (192)
+|||++|+.+++.....|- .+. .+. +.. ...+.. ...+.. +.......+++|+||+++.
T Consensus 228 TGKT~LAraIA~el~~~fi---~V~-~se----------L~~----k~~Ge~--~~~vr~lF~~A~~~~P~ILfIDEID~ 287 (438)
T PTZ00361 228 TGKTLLAKAVANETSATFL---RVV-GSE----------LIQ----KYLGDG--PKLVRELFRVAEENAPSIVFIDEIDA 287 (438)
T ss_pred CCHHHHHHHHHHhhCCCEE---EEe-cch----------hhh----hhcchH--HHHHHHHHHHHHhCCCcEEeHHHHHH
Confidence 6999999999998765542 221 111 110 000000 001111 2222245688999999753
Q ss_pred ch------------h----HHHhhccCCC--CCCCceEEEEecchhHHhhc-----CCCceEecCCCCHHHHHHHHHHhh
Q 039644 80 FS------------Q----LESLMGSLDW--LTPVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 80 ~~------------~----~~~l~~~~~~--~~~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
.. . +-.+...+.. ...+..||.+|......... .....+.++..+..+..++|..+.
T Consensus 288 l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 288 IGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred HhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 21 0 1122222221 12356788888765443332 124578899999999999998775
Q ss_pred c
Q 039644 137 F 137 (192)
Q Consensus 137 ~ 137 (192)
.
T Consensus 368 ~ 368 (438)
T PTZ00361 368 S 368 (438)
T ss_pred h
Confidence 3
No 122
>PRK09183 transposase/IS protein; Provisional
Probab=96.09 E-value=0.025 Score=43.14 Aligned_cols=24 Identities=25% Similarity=0.065 Sum_probs=16.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFL 24 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv 24 (192)
+|||+||..++......-..+.++
T Consensus 113 tGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 113 VGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEE
Confidence 699999999988644332233344
No 123
>PRK06921 hypothetical protein; Provisional
Probab=95.97 E-value=0.019 Score=44.03 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=19.2
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEe
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~ 25 (192)
+|||.||..+++.+..+ ...++|+.
T Consensus 128 ~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 128 SGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 69999999999987654 44556665
No 124
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.22 Score=41.67 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=47.3
Q ss_pred EEEEEeCCC--CchhHHHhhccCCCCCCCceEEEEecchhHHhh--cCCCceEecCCCCHHHHHHHHHHhh
Q 039644 70 VLIVFDDVT--CFSQLESLMGSLDWLTPVSRIILTTRNKQVLRN--WGVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 70 ~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~--~~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
=++|+|.|+ +.+.|..+...+-.-....++|..|.+.+-... .+..+.+.++.++.++....+...+
T Consensus 121 KVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 121 KVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred eEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHH
Confidence 389999998 456689988887765666666666665442222 2556789999999988777766654
No 125
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.88 E-value=0.045 Score=36.49 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=18.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+++.++..+.......+++.
T Consensus 13 ~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 13 SGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CcHHHHHHHHHhccCCCCCCEEEEC
Confidence 6999999999998765544455554
No 126
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.12 Score=44.52 Aligned_cols=62 Identities=23% Similarity=0.239 Sum_probs=37.7
Q ss_pred CchhHHHHHHHHHhhC-CCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCC
Q 039644 1 IGKTAIARAIFDKISG-DFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVT 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 78 (192)
+|||+||+++++++.. .+-.+.+++ .+.. ....+..+++.+- ..+..++.-.+.++||||++
T Consensus 442 sGKT~L~kal~~~~~k~~~~hv~~v~-Cs~l--~~~~~e~iQk~l~-------------~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 442 SGKTNLVKALFDYYSKDLIAHVEIVS-CSTL--DGSSLEKIQKFLN-------------NVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred CCHhHHHHHHHHHhccccceEEEEEe-chhc--cchhHHHHHHHHH-------------HHHHHHHhhCCcEEEEcchh
Confidence 6999999999997653 333344444 2221 1123444443332 22455667789999999996
No 127
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.69 E-value=0.029 Score=44.32 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=45.1
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||.||..+++.+...-..++++. ..+++..+......... +... ....+.+ -=||||||+...
T Consensus 194 tGKThLa~aIa~~l~~~g~~V~y~t-----------~~~l~~~l~~~~~~~~~--~~~~-~~~~l~~-~DLLIIDDlG~e 258 (329)
T PRK06835 194 TGKTFLSNCIAKELLDRGKSVIYRT-----------ADELIEILREIRFNNDK--ELEE-VYDLLIN-CDLLIIDDLGTE 258 (329)
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEEE-----------HHHHHHHHHHHHhccch--hHHH-HHHHhcc-CCEEEEeccCCC
Confidence 6999999999998654444556664 33444333322111111 1111 1222222 238999999533
Q ss_pred --hhH--HHhhccCCC-CCCCceEEEEecc
Q 039644 81 --SQL--ESLMGSLDW-LTPVSRIILTTRN 105 (192)
Q Consensus 81 --~~~--~~l~~~~~~-~~~~~~iivTtR~ 105 (192)
..| +.+...+.. ...+..+||||..
T Consensus 259 ~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 259 KITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 222 223222221 1234568888865
No 128
>PRK06526 transposase; Provisional
Probab=95.67 E-value=0.026 Score=42.91 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+||..++......-..+.|+ ...++...+...... +. ....+. .+. +.-||||||+...
T Consensus 109 tGKThLa~al~~~a~~~g~~v~f~-----------t~~~l~~~l~~~~~~-~~---~~~~l~-~l~-~~dlLIIDD~g~~ 171 (254)
T PRK06526 109 TGKTHLAIGLGIRACQAGHRVLFA-----------TAAQWVARLAAAHHA-GR---LQAELV-KLG-RYPLLIVDEVGYI 171 (254)
T ss_pred CchHHHHHHHHHHHHHCCCchhhh-----------hHHHHHHHHHHHHhc-Cc---HHHHHH-Hhc-cCCEEEEcccccC
Confidence 699999999998754332233333 233444444332211 11 112222 222 3458999999743
Q ss_pred h--h-H-HHhhccCCC-CCCCceEEEEecch
Q 039644 81 S--Q-L-ESLMGSLDW-LTPVSRIILTTRNK 106 (192)
Q Consensus 81 ~--~-~-~~l~~~~~~-~~~~~~iivTtR~~ 106 (192)
. . . +.+...+.. ...++ +|+||...
T Consensus 172 ~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 172 PFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 1 1 1 122222211 12233 88888764
No 129
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.66 E-value=0.043 Score=41.26 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=21.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+|+..+.......|+.++++.
T Consensus 24 SGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 24 SGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred CCHHHHHHHHHHhhcccCCEEEEEe
Confidence 6999999999999999997776664
No 130
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.53 E-value=0.067 Score=41.84 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=47.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC-
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC- 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~- 79 (192)
+|||.||..+++.+...-..+.++. ..+++..+-...... ........+. +.=||||||+-.
T Consensus 167 ~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~~-----~~~~~l~~l~-~~dlLiIDDiG~e 229 (306)
T PRK08939 167 VGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISDG-----SVKEKIDAVK-EAPVLMLDDIGAE 229 (306)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhcC-----cHHHHHHHhc-CCCEEEEecCCCc
Confidence 6999999999998654433445554 334444544443221 1122223333 345899999963
Q ss_pred -chhHHH--hhccCCC-C-CCCceEEEEecc
Q 039644 80 -FSQLES--LMGSLDW-L-TPVSRIILTTRN 105 (192)
Q Consensus 80 -~~~~~~--l~~~~~~-~-~~~~~iivTtR~ 105 (192)
...|.. +...+.+ . ..+...|+||..
T Consensus 230 ~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 230 QMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 344542 3333321 1 234457777753
No 131
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.53 E-value=0.76 Score=34.87 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=88.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC-----chHHHHhhc-CCce-EEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP-----YIDLNFRRL-SRMK-VLI 72 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-----~~~~l~~~l-~~~~-~Ll 72 (192)
+|||.+++.+.....+.=.+++.++ .+. .....+...+..++..+..- .. ....+.... ++++ ..+
T Consensus 62 sGKTv~~Ral~~s~~~d~~~~v~i~--~~~----~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l 135 (269)
T COG3267 62 SGKTVLRRALLASLNEDQVAVVVID--KPT----LSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVL 135 (269)
T ss_pred CchhHHHHHHHHhcCCCceEEEEec--Ccc----hhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 5999999955555443322333332 221 45666777777777663322 22 223333333 4555 899
Q ss_pred EEeCCCCch--h---HHHhhccCCCCCCCceEEEEe--------cchhHHhhcCCCce-EecCCCCHHHHHHHHHHhhcC
Q 039644 73 VFDDVTCFS--Q---LESLMGSLDWLTPVSRIILTT--------RNKQVLRNWGVSKI-YEMEALEYHHALELFSQHAFK 138 (192)
Q Consensus 73 VlDdv~~~~--~---~~~l~~~~~~~~~~~~iivTt--------R~~~~~~~~~~~~~-~~l~~l~~~ea~~lf~~~~~~ 138 (192)
+.|+..... . ...|...-..+..--+|+..- |............. |++.|++..+....++.+..+
T Consensus 136 ~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~ 215 (269)
T COG3267 136 MVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEG 215 (269)
T ss_pred eehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhc
Confidence 999997542 2 233333222222112233321 11111111112233 899999999888777766544
Q ss_pred CCCC-CccHHHHHHHHHHHhCCCchHHHHHHH
Q 039644 139 RNHP-DVGYEKLSSNVTKYAQGIPLALKVLSC 169 (192)
Q Consensus 139 ~~~~-~~~~~~~~~~i~~~~~g~Plai~~~~~ 169 (192)
...+ +---++....|.....|.|.+|..++.
T Consensus 216 a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 216 AGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred cCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 3322 222345566788889999999988774
No 132
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.45 E-value=0.42 Score=37.77 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=41.5
Q ss_pred ceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhHHh-hc-CCCceEecCCCCHHHHHHHHHHh
Q 039644 68 MKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVLR-NW-GVSKIYEMEALEYHHALELFSQH 135 (192)
Q Consensus 68 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~~-~~-~~~~~~~l~~l~~~ea~~lf~~~ 135 (192)
.+-++|+|+++..+ ....+...+.....++.+|++|.+..... .. +....+.+.+++.+++.+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 34455678887653 23444333333334566888887755222 22 44577899999999988877553
No 133
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.40 E-value=0.13 Score=45.11 Aligned_cols=137 Identities=17% Similarity=0.252 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhh-cCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRR-LSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~ 79 (192)
+|||+||+.+++.....| +.+. ..++.. ...+.. ...+..+... -...+++|+||+++.
T Consensus 498 tGKT~lakalA~e~~~~f---i~v~-----------~~~l~~----~~vGes--e~~i~~~f~~A~~~~p~iifiDEid~ 557 (733)
T TIGR01243 498 TGKTLLAKAVATESGANF---IAVR-----------GPEILS----KWVGES--EKAIREIFRKARQAAPAIIFFDEIDA 557 (733)
T ss_pred CCHHHHHHHHHHhcCCCE---EEEe-----------hHHHhh----cccCcH--HHHHHHHHHHHHhcCCEEEEEEChhh
Confidence 699999999999876543 1121 111111 110100 0122222222 245689999999963
Q ss_pred ch--------------hHHHhhccCCCC--CCCceEEEEecchhHHhhc-----CCCceEecCCCCHHHHHHHHHHhhcC
Q 039644 80 FS--------------QLESLMGSLDWL--TPVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSQHAFK 138 (192)
Q Consensus 80 ~~--------------~~~~l~~~~~~~--~~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~~ea~~lf~~~~~~ 138 (192)
.. ....+...+... ..+.-||.||......... .....+.++..+.++-.++|+.+...
T Consensus 558 l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~ 637 (733)
T TIGR01243 558 IAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS 637 (733)
T ss_pred hhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC
Confidence 21 123333333321 2333455566554432221 23567888888888888888766532
Q ss_pred CCC-CCccHHHHHHHHHHHhCCCc
Q 039644 139 RNH-PDVGYEKLSSNVTKYAQGIP 161 (192)
Q Consensus 139 ~~~-~~~~~~~~~~~i~~~~~g~P 161 (192)
... ++.. ...+++.+.|+-
T Consensus 638 ~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 638 MPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCCCccCC----HHHHHHHcCCCC
Confidence 221 1222 334556666654
No 134
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.40 E-value=0.089 Score=39.77 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=47.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+||..+++.+...-..+++++ ..+++..+-........ ....+...+.. .=||||||+...
T Consensus 110 tGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~~~~~---~~~~~l~~l~~-~dlLvIDDig~~ 174 (244)
T PRK07952 110 TGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFSNSET---SEEQLLNDLSN-VDLLVIDEIGVQ 174 (244)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHhhccc---cHHHHHHHhcc-CCEEEEeCCCCC
Confidence 6999999999998755544455553 34555444433321111 22234444543 347888999643
Q ss_pred --hhHHH--hhccCCC-CCCCceEEEEecc
Q 039644 81 --SQLES--LMGSLDW-LTPVSRIILTTRN 105 (192)
Q Consensus 81 --~~~~~--l~~~~~~-~~~~~~iivTtR~ 105 (192)
.+|+. +...+.. ......+||||..
T Consensus 175 ~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 175 TESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 33432 2111111 1223457777764
No 135
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.84 Score=36.44 Aligned_cols=147 Identities=18% Similarity=0.291 Sum_probs=82.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCC-ceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSR-MKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~ 79 (192)
.|||-||++|+++....| +.+++. ++.+...+.+.. +++.++...+. .+++|.+|.++.
T Consensus 196 TGKTLLAkAVA~~T~AtF-----IrvvgS-------------ElVqKYiGEGaR--lVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 196 TGKTLLAKAVANQTDATF-----IRVVGS-------------ELVQKYIGEGAR--LVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred CcHHHHHHHHHhccCceE-----EEeccH-------------HHHHHHhccchH--HHHHHHHHHhhcCCeEEEEechhh
Confidence 599999999999887643 443332 333343343332 55556666654 599999999963
Q ss_pred ch------------h----HHHhhccCCCCC--CCceEEEEecchhHHhhc-----CCCceEecCCCCHHHHHHHHHHhh
Q 039644 80 FS------------Q----LESLMGSLDWLT--PVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 80 ~~------------~----~~~l~~~~~~~~--~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
.. + +=++...+..+. .+-|||..|.-.+...+. ...+.++.+.-+.+--.++|.-++
T Consensus 256 Ig~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt 335 (406)
T COG1222 256 IGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT 335 (406)
T ss_pred hhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence 21 1 223444444433 456888887665544433 224567777444444556676665
Q ss_pred cCCC-CCCccHHHHHHHHHHHhCCCch----HHHHHHHHh
Q 039644 137 FKRN-HPDVGYEKLSSNVTKYAQGIPL----ALKVLSCFL 171 (192)
Q Consensus 137 ~~~~-~~~~~~~~~~~~i~~~~~g~Pl----ai~~~~~~l 171 (192)
..=+ .++-.++ .+++.+.|.-= |+-+=||.+
T Consensus 336 rkM~l~~dvd~e----~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 336 RKMNLADDVDLE----LLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred hhccCccCcCHH----HHHHhcCCCchHHHHHHHHHHhHH
Confidence 3222 2233344 56666776643 344445543
No 136
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.24 E-value=0.049 Score=48.50 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||.||+.++..+-
T Consensus 607 vGKT~lA~~La~~l~ 621 (852)
T TIGR03345 607 VGKTETALALAELLY 621 (852)
T ss_pred CCHHHHHHHHHHHHh
Confidence 699999999998763
No 137
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.23 E-value=0.076 Score=47.21 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=40.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC--chHHHHhhcCCce-EEEEEeC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP--YIDLNFRRLSRMK-VLIVFDD 76 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~--~~~~l~~~l~~~~-~LlVlDd 76 (192)
+|||+||+.+++.+-..-...+-++ +++.... ..... +.+..+. .. ....+...++.++ .+++||+
T Consensus 550 vGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~-~~~~~--------l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDe 619 (821)
T CHL00095 550 VGKTELTKALASYFFGSEDAMIRLD-MSEYMEK-HTVSK--------LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDE 619 (821)
T ss_pred CcHHHHHHHHHHHhcCCccceEEEE-chhcccc-ccHHH--------hcCCCCcccCcCccchHHHHHHhCCCeEEEECC
Confidence 6999999999997533222333333 3332111 11222 1122222 21 2234555565565 4899999
Q ss_pred CCCch--hHHHhhccC
Q 039644 77 VTCFS--QLESLMGSL 90 (192)
Q Consensus 77 v~~~~--~~~~l~~~~ 90 (192)
++..+ .++.|...+
T Consensus 620 ieka~~~v~~~Llq~l 635 (821)
T CHL00095 620 IEKAHPDIFNLLLQIL 635 (821)
T ss_pred hhhCCHHHHHHHHHHh
Confidence 98543 345444433
No 138
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.31 Score=40.82 Aligned_cols=149 Identities=17% Similarity=0.144 Sum_probs=78.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+||..++..- .|+.+=-+ |+.......-..-... +...+....+..-..||+||+...
T Consensus 549 sGKTaLAA~iA~~S--~FPFvKii---Spe~miG~sEsaKc~~-------------i~k~F~DAYkS~lsiivvDdiErL 610 (744)
T KOG0741|consen 549 SGKTALAAKIALSS--DFPFVKII---SPEDMIGLSESAKCAH-------------IKKIFEDAYKSPLSIIVVDDIERL 610 (744)
T ss_pred CChHHHHHHHHhhc--CCCeEEEe---ChHHccCccHHHHHHH-------------HHHHHHHhhcCcceEEEEcchhhh
Confidence 69999999998753 56653333 2211110111111111 111122223445568999999766
Q ss_pred hhHHHh---------------hccCCCCCCCceEEEEecchhHHhhcC----CCceEecCCCCH-HHHHHHHHHhhcCCC
Q 039644 81 SQLESL---------------MGSLDWLTPVSRIILTTRNKQVLRNWG----VSKIYEMEALEY-HHALELFSQHAFKRN 140 (192)
Q Consensus 81 ~~~~~l---------------~~~~~~~~~~~~iivTtR~~~~~~~~~----~~~~~~l~~l~~-~ea~~lf~~~~~~~~ 140 (192)
-+|..+ ....|+.+..-=|+-||....+...++ ....+.++.++. ++..+++...- .
T Consensus 611 iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n---~ 687 (744)
T KOG0741|consen 611 LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELN---I 687 (744)
T ss_pred hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHcc---C
Confidence 554322 222333333333444777777777773 256788898887 66777765542 1
Q ss_pred CCCccHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 039644 141 HPDVGYEKLSSNVTKYAQGIPLALKVLSCFLH 172 (192)
Q Consensus 141 ~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 172 (192)
..+...+..+.+...+| +-..|+-+..++.
T Consensus 688 fsd~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 688 FSDDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred CCcchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 22334555555665555 4444555555553
No 139
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.20 E-value=0.096 Score=46.77 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=46.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC--chHHHHhhcCCce-EEEEEeC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP--YIDLNFRRLSRMK-VLIVFDD 76 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~--~~~~l~~~l~~~~-~LlVlDd 76 (192)
+|||++|+.++..+...-...+.++ ++..... . ....+.+..+. .. ....+...++.++ .+++||+
T Consensus 606 vGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~-~--------~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDe 675 (852)
T TIGR03346 606 VGKTELAKALAEFLFDDEDAMVRID-MSEYMEK-H--------SVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDE 675 (852)
T ss_pred CCHHHHHHHHHHHhcCCCCcEEEEe-chhhccc-c--------hHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEec
Confidence 6999999999997543323333443 3332111 1 11222222222 21 1123333343333 4999999
Q ss_pred CCCch--hHHHhhccCCCC-----------CCCceEEEEecc
Q 039644 77 VTCFS--QLESLMGSLDWL-----------TPVSRIILTTRN 105 (192)
Q Consensus 77 v~~~~--~~~~l~~~~~~~-----------~~~~~iivTtR~ 105 (192)
+...+ .+..|...+..+ -.++-||+||..
T Consensus 676 ieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 676 VEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred cccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 98543 355554443221 123447777765
No 140
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.061 Score=46.93 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=47.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC--chHHHHhhcCCceE-EEEEeC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP--YIDLNFRRLSRMKV-LIVFDD 76 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~--~~~~l~~~l~~~~~-LlVlDd 76 (192)
+|||.||+.++..+-..=...+-++ +|++... .-+..+.+.++. .. ---.|-+..+.+|| ++.||.
T Consensus 532 VGKTELAkaLA~~Lfg~e~aliR~D-MSEy~Ek---------HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDE 601 (786)
T COG0542 532 VGKTELAKALAEALFGDEQALIRID-MSEYMEK---------HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDE 601 (786)
T ss_pred ccHHHHHHHHHHHhcCCCccceeec-hHHHHHH---------HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEech
Confidence 7999999999997632223444444 4443222 334555566665 44 33445556677887 888899
Q ss_pred CCCch--hHHHhhccC
Q 039644 77 VTCFS--QLESLMGSL 90 (192)
Q Consensus 77 v~~~~--~~~~l~~~~ 90 (192)
+..-+ .++-|.+.+
T Consensus 602 IEKAHpdV~nilLQVl 617 (786)
T COG0542 602 IEKAHPDVFNLLLQVL 617 (786)
T ss_pred hhhcCHHHHHHHHHHh
Confidence 97543 345444433
No 141
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.12 E-value=0.02 Score=41.08 Aligned_cols=62 Identities=24% Similarity=0.268 Sum_probs=33.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+|||.||..+++....+-..+.|+. ..+++..+-... . .. ....+.+.+.+ .=||||||+-.
T Consensus 58 ~GKThLa~ai~~~~~~~g~~v~f~~-----------~~~L~~~l~~~~-~-~~---~~~~~~~~l~~-~dlLilDDlG~ 119 (178)
T PF01695_consen 58 TGKTHLAVAIANEAIRKGYSVLFIT-----------ASDLLDELKQSR-S-DG---SYEELLKRLKR-VDLLILDDLGY 119 (178)
T ss_dssp SSHHHHHHHHHHHHHHTT--EEEEE-----------HHHHHHHHHCCH-C-CT---THCHHHHHHHT-SSCEEEETCTS
T ss_pred HHHHHHHHHHHHHhccCCcceeEee-----------cCceeccccccc-c-cc---chhhhcCcccc-ccEecccccce
Confidence 6999999999997544333456664 344554443221 1 11 11222333332 34788999964
No 142
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.91 E-value=0.13 Score=42.81 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=49.7
Q ss_pred CceEEEEEeCCCCch-------h-------HHHhhccCCCCCCCceEEEEecchhHHhh-----cCCCceEecCCCCHHH
Q 039644 67 RMKVLIVFDDVTCFS-------Q-------LESLMGSLDWLTPVSRIILTTRNKQVLRN-----WGVSKIYEMEALEYHH 127 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~-------~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~e 127 (192)
..+++|.||+++... + ...+...+.....+--||.||........ ......+.++.-+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 468999999997321 0 12222222222233345556665432211 1234677888888888
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCch
Q 039644 128 ALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 128 a~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 162 (192)
-.++|..+...... ..........+++.+.|+-=
T Consensus 397 R~~Il~~~l~~~~~-~~~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 397 REKIFKIHLQKFRP-KSWKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred HHHHHHHHHhhcCC-CcccccCHHHHHhhcCCCCH
Confidence 88888877643221 10001123456666666643
No 143
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.67 E-value=0.21 Score=35.62 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=37.2
Q ss_pred chHHHHhhcCCceE-EEEEeCCCCch-----hHHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecCC
Q 039644 57 YIDLNFRRLSRMKV-LIVFDDVTCFS-----QLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEA 122 (192)
Q Consensus 57 ~~~~l~~~l~~~~~-LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~ 122 (192)
..+..++.+.+.+| |+|||.+..-- ..+.+...+.....+..||+|-|+..-.-..-...+.+|..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence 34445555555555 99999995221 22333333444455678999999865433332334444443
No 144
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.62 E-value=0.12 Score=46.11 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=38.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC--chHHHHhhcCCce-EEEEEeC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP--YIDLNFRRLSRMK-VLIVFDD 76 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~--~~~~l~~~l~~~~-~LlVlDd 76 (192)
+|||+||+.+++.+...-...+.+. ++.... ......+.+..+. .. ....+...++..+ -+|+||+
T Consensus 609 ~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~---------~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDE 678 (857)
T PRK10865 609 VGKTELCKALANFMFDSDDAMVRID-MSEFME---------KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDE 678 (857)
T ss_pred CCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhh---------hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEee
Confidence 6999999999986533323334443 332111 1112223333222 21 1122333343333 5999999
Q ss_pred CCCc--hhHHHhhcc
Q 039644 77 VTCF--SQLESLMGS 89 (192)
Q Consensus 77 v~~~--~~~~~l~~~ 89 (192)
+... ..+..+...
T Consensus 679 ieka~~~v~~~Ll~i 693 (857)
T PRK10865 679 VEKAHPDVFNILLQV 693 (857)
T ss_pred hhhCCHHHHHHHHHH
Confidence 9854 334555443
No 145
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.54 E-value=0.14 Score=39.03 Aligned_cols=63 Identities=24% Similarity=0.247 Sum_probs=37.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+|||.||..+.+++...--.+.++ ...+++..+........ ....+.+.+. +-=||||||+-.
T Consensus 116 ~GKThLa~Ai~~~l~~~g~sv~f~-----------~~~el~~~Lk~~~~~~~----~~~~l~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 116 VGKTHLAIAIGNELLKAGISVLFI-----------TAPDLLSKLKAAFDEGR----LEEKLLRELK-KVDLLIIDDIGY 178 (254)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEE-----------EHHHHHHHHHHHHhcCc----hHHHHHHHhh-cCCEEEEecccC
Confidence 699999999999877433344555 35566666655554411 1122222222 223899999964
No 146
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.42 E-value=0.14 Score=37.38 Aligned_cols=100 Identities=9% Similarity=0.038 Sum_probs=53.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+||||++..+...+.......++... .+.. ..... ...+..+... +.+ ....+.++..++..+=++++|.+.+
T Consensus 12 SGKTTll~~ll~~~~~~~~~~i~t~e-~~~E---~~~~~-~~~~i~q~~v-g~~~~~~~~~i~~aLr~~pd~ii~gEird 85 (198)
T cd01131 12 SGKSTTLAAMIDYINKNKTHHILTIE-DPIE---FVHES-KRSLINQREV-GLDTLSFENALKAALRQDPDVILVGEMRD 85 (198)
T ss_pred CCHHHHHHHHHHHhhhcCCcEEEEEc-CCcc---ccccC-ccceeeeccc-CCCccCHHHHHHHHhcCCcCEEEEcCCCC
Confidence 59999999998877655555555431 1110 00000 0011111000 111 2245566777777788999999987
Q ss_pred chhHHHhhccCCCCCCCceEEEEecchhHH
Q 039644 80 FSQLESLMGSLDWLTPVSRIILTTRNKQVL 109 (192)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~iivTtR~~~~~ 109 (192)
.+.+....... ..|..++.|+...+..
T Consensus 86 ~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 86 LETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred HHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 76655443332 2344577676655443
No 147
>PRK10536 hypothetical protein; Provisional
Probab=94.38 E-value=0.2 Score=38.15 Aligned_cols=33 Identities=12% Similarity=0.331 Sum_probs=23.5
Q ss_pred eEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEec
Q 039644 69 KVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTR 104 (192)
Q Consensus 69 ~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR 104 (192)
.-++|+|.+.+.. +...+.. ..+.+|++|++--
T Consensus 177 ~~~vIvDEaqn~~~~~~k~~lt---R~g~~sk~v~~GD 211 (262)
T PRK10536 177 NAVVILDEAQNVTAAQMKMFLT---RLGENVTVIVNGD 211 (262)
T ss_pred CCEEEEechhcCCHHHHHHHHh---hcCCCCEEEEeCC
Confidence 4599999998664 4455543 3468899998864
No 148
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.33 E-value=0.19 Score=36.40 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=37.6
Q ss_pred chHHHHhhcCCceE-EEEEeCCCCch-----hHHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecCC
Q 039644 57 YIDLNFRRLSRMKV-LIVFDDVTCFS-----QLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEA 122 (192)
Q Consensus 57 ~~~~l~~~l~~~~~-LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~ 122 (192)
..+..+..+.+.+| |+|||.+..-- ..+.+...+.....+..||+|-|+..-.-..-...+.+|..
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 34445555655555 99999995322 23344443444456678999999865433322333444443
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.19 E-value=0.7 Score=41.41 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=37.9
Q ss_pred CceEEEEEeCCCCch-------hHH---HhhccCCCCCCCceEEEEecchhHHhh-------cCCCceEecCCCCHHHHH
Q 039644 67 RMKVLIVFDDVTCFS-------QLE---SLMGSLDWLTPVSRIILTTRNKQVLRN-------WGVSKIYEMEALEYHHAL 129 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~-------~~~---~l~~~~~~~~~~~~iivTtR~~~~~~~-------~~~~~~~~l~~l~~~ea~ 129 (192)
+.+.+|++|.++... ..+ -+.+.+. .+.-++|-+|........ ....+.+.+++++.++..
T Consensus 279 ~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~ 356 (852)
T TIGR03345 279 PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAI 356 (852)
T ss_pred CCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHH
Confidence 467899999996432 111 2333322 122345555543221111 123468999999999999
Q ss_pred HHHHHh
Q 039644 130 ELFSQH 135 (192)
Q Consensus 130 ~lf~~~ 135 (192)
+++...
T Consensus 357 ~iL~~~ 362 (852)
T TIGR03345 357 RMLRGL 362 (852)
T ss_pred HHHHHH
Confidence 997543
No 150
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.02 E-value=0.9 Score=34.67 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=37.4
Q ss_pred eEEEEEeCCCCc--hhHHHhhccC-------CC---------CCCCceEEEEecchhHHh-------hcCCCceEecCCC
Q 039644 69 KVLIVFDDVTCF--SQLESLMGSL-------DW---------LTPVSRIILTTRNKQVLR-------NWGVSKIYEMEAL 123 (192)
Q Consensus 69 ~~LlVlDdv~~~--~~~~~l~~~~-------~~---------~~~~~~iivTtR~~~~~~-------~~~~~~~~~l~~l 123 (192)
...+++|+++.. +....+...+ ++ ..++.+||.|+....... ....-..+.+...
T Consensus 106 g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P 185 (262)
T TIGR02640 106 GFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYP 185 (262)
T ss_pred CCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCC
Confidence 468999999853 2233332221 21 113668888887432110 0011235667777
Q ss_pred CHHHHHHHHHHhh
Q 039644 124 EYHHALELFSQHA 136 (192)
Q Consensus 124 ~~~ea~~lf~~~~ 136 (192)
+.++-.+++..+.
T Consensus 186 ~~~~e~~Il~~~~ 198 (262)
T TIGR02640 186 DIDTETAILRAKT 198 (262)
T ss_pred CHHHHHHHHHHhh
Confidence 7777777777764
No 151
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.96 E-value=1.1 Score=35.02 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=37.6
Q ss_pred CceEEEEEeCCCCchh--HHHhhccCCCCCCCceEEEEecchhH-Hhhc-CCCceEecCCCCHHH
Q 039644 67 RMKVLIVFDDVTCFSQ--LESLMGSLDWLTPVSRIILTTRNKQV-LRNW-GVSKIYEMEALEYHH 127 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~iivTtR~~~~-~~~~-~~~~~~~l~~l~~~e 127 (192)
+..-++++|+++.... -..+...+......+.+|++|....- .... +....+.+.+.+...
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCchHHH
Confidence 4567899999997653 45555555555677888888874332 2212 345567776644333
No 152
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.89 E-value=0.42 Score=42.06 Aligned_cols=93 Identities=12% Similarity=0.188 Sum_probs=45.6
Q ss_pred CCceEEEEEeCCCCch-------------hHHHhhccCCCCC-CCceEEE-EecchhHHhh-c----CCCceEecCCCCH
Q 039644 66 SRMKVLIVFDDVTCFS-------------QLESLMGSLDWLT-PVSRIIL-TTRNKQVLRN-W----GVSKIYEMEALEY 125 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~-~~~~iiv-TtR~~~~~~~-~----~~~~~~~l~~l~~ 125 (192)
...+.+|+||+++... ....+...+.... .+..+++ +|........ . .....+.+...+.
T Consensus 269 ~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~ 348 (733)
T TIGR01243 269 ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDK 348 (733)
T ss_pred hcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCH
Confidence 4567899999986421 1223333222222 2333444 4443321111 1 1234677777788
Q ss_pred HHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCc
Q 039644 126 HHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIP 161 (192)
Q Consensus 126 ~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 161 (192)
++-.+++........... ......+++.+.|..
T Consensus 349 ~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 349 RARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred HHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 888888875542211111 112345666666664
No 153
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.81 E-value=2.5 Score=32.89 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=42.9
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHH
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFS 133 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~ 133 (192)
+.+-++|+|+++... ..+.+...+-+-..++.+|++|.+.. +...+ +....+.+.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 455689999999765 46777777766666777777776644 33333 4456677766 5555555443
No 154
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.79 E-value=0.42 Score=42.04 Aligned_cols=22 Identities=0% Similarity=0.042 Sum_probs=18.2
Q ss_pred CceEecCCCCHHHHHHHHHHhh
Q 039644 115 SKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 115 ~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
-+.+.++.++.++..+++....
T Consensus 337 f~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 337 FQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CceEEeCCCCHHHHHHHHHHHH
Confidence 3578999999999999988644
No 155
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.62 E-value=0.068 Score=37.99 Aligned_cols=17 Identities=35% Similarity=0.692 Sum_probs=14.9
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+|||+|.++++.++..+
T Consensus 35 ~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 35 SGKTSLLRALLDRLAER 51 (185)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 69999999999987665
No 156
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.51 E-value=0.97 Score=39.23 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=40.3
Q ss_pred CCceEEEEEeCCCCch------------h----HHHhhccCCCCC--CCceEEEEecchhHHhhc-----CCCceEecCC
Q 039644 66 SRMKVLIVFDDVTCFS------------Q----LESLMGSLDWLT--PVSRIILTTRNKQVLRNW-----GVSKIYEMEA 122 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~------------~----~~~l~~~~~~~~--~~~~iivTtR~~~~~~~~-----~~~~~~~l~~ 122 (192)
...+++|+||+++... . ...+...+.... .+.-+|.||......... ...+.+.++.
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~ 321 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 321 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCC
Confidence 3468999999996531 1 223322222222 233344466655432221 1245677887
Q ss_pred CCHHHHHHHHHHhhcC
Q 039644 123 LEYHHALELFSQHAFK 138 (192)
Q Consensus 123 l~~~ea~~lf~~~~~~ 138 (192)
.+.++-.+++..+...
T Consensus 322 Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 322 PDVRGREQILKVHMRR 337 (644)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 7877778887776543
No 157
>PRK08118 topology modulation protein; Reviewed
Probab=93.38 E-value=0.28 Score=34.74 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=19.1
Q ss_pred CchhHHHHHHHHHhh---CCCcceEEEe
Q 039644 1 IGKTAIARAIFDKIS---GDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~---~~F~~~~wv~ 25 (192)
+||||||+.+++.+. -+|+..+|-.
T Consensus 12 sGKSTlak~L~~~l~~~~~~lD~l~~~~ 39 (167)
T PRK08118 12 SGKSTLARQLGEKLNIPVHHLDALFWKP 39 (167)
T ss_pred CCHHHHHHHHHHHhCCCceecchhhccc
Confidence 699999999999743 4467777643
No 158
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.28 E-value=0.26 Score=35.07 Aligned_cols=114 Identities=9% Similarity=0.092 Sum_probs=58.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC---cCchHHHHhhcCC--ceEEEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV---MPYIDLNFRRLSR--MKVLIVFD 75 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~l~~--~~~LlVlD 75 (192)
+|||++|.+++.. .....+++..... .+ .++...+.+.....+.. .+....+.+.+.+ ..-.+++|
T Consensus 10 sGKS~~a~~~~~~---~~~~~~y~at~~~-----~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLID 80 (169)
T cd00544 10 SGKSRFAERLAAE---LGGPVTYIATAEA-----FD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLID 80 (169)
T ss_pred CCHHHHHHHHHHh---cCCCeEEEEccCc-----CC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEE
Confidence 6999999999876 2235566653322 22 23444443322222222 3344445554422 23379999
Q ss_pred CCCCc-----------------hhHHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecCCCCHHHHHHHHHHhhc
Q 039644 76 DVTCF-----------------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 76 dv~~~-----------------~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
.+... ..+..+...+. ..+..+|++|.+ +-++..+.+.....|....+
T Consensus 81 clt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsnE------------vG~g~vp~~~~~r~f~d~lG 145 (169)
T cd00544 81 CLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSNE------------VGLGVVPENALGRRFRDELG 145 (169)
T ss_pred cHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEECC------------cCCCCCCCCHHHHHHHHHHH
Confidence 98311 11222333332 234456766642 44566666667777776653
No 159
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.24 E-value=0.48 Score=35.26 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=18.9
Q ss_pred CchhHHHHHHHHHhhCC------CcceEEEee
Q 039644 1 IGKTAIARAIFDKISGD------FECSCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~------F~~~~wv~~ 26 (192)
+|||+||.+++...... -..++|++.
T Consensus 30 sGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 30 SGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 69999999998653222 257889873
No 160
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.07 E-value=0.86 Score=34.43 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=24.9
Q ss_pred CCceEEEEEeCCC---CchhHHHhhccCC----CCCCCceEEEEecchhHHhh
Q 039644 66 SRMKVLIVFDDVT---CFSQLESLMGSLD----WLTPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 66 ~~~~~LlVlDdv~---~~~~~~~l~~~~~----~~~~~~~iivTtR~~~~~~~ 111 (192)
+..+|+|.+||+. .......+...+. ....+..|..||..++....
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 3469999999995 2233444433322 22234455556655554444
No 161
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.65 E-value=0.17 Score=38.58 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=38.7
Q ss_pred CchhHHHHHHHHHh--hCCC----cceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC---------------ch
Q 039644 1 IGKTAIARAIFDKI--SGDF----ECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP---------------YI 58 (192)
Q Consensus 1 iGKTtLa~~~~~~~--~~~F----~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~---------------~~ 58 (192)
+|||.|+.+++-.+ .... ..++|++.-+. +....+. ++++....+.+. .+ .+
T Consensus 49 sGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~-----f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L 122 (256)
T PF08423_consen 49 SGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGT-----FSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEELLELL 122 (256)
T ss_dssp SSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSS-----S-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHH
T ss_pred cccchHHHHHHHHhhcccccccCCCceEEEeCCCC-----CCHHHHH-HHhhccccccchhhhceeeeecCCHHHHHHHH
Confidence 69999999998743 2222 24788874333 5555554 455543221111 11 23
Q ss_pred HHHHhhc-CCceEEEEEeCCC
Q 039644 59 DLNFRRL-SRMKVLIVFDDVT 78 (192)
Q Consensus 59 ~~l~~~l-~~~~~LlVlDdv~ 78 (192)
..+...+ .++--|||+|.+.
T Consensus 123 ~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 123 EQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHhhccccceEEEEecchH
Confidence 3333333 2345599999995
No 162
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.65 E-value=0.34 Score=38.88 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=70.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh-cCCCC--cC--------chHHHHh--hc--
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL-KDKNV--MP--------YIDLNFR--RL-- 65 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~--~~--------~~~~l~~--~l-- 65 (192)
.|||.+.+++.+.... ..+|+..+.. ++...+...|+.+.. ...+. .+ .+..+.+ ..
T Consensus 41 TGKT~~~r~~l~~~n~---~~vw~n~~ec-----ft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~ 112 (438)
T KOG2543|consen 41 TGKTYLVRQLLRKLNL---ENVWLNCVEC-----FTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATN 112 (438)
T ss_pred CchhHHHHHHHhhcCC---cceeeehHHh-----ccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhc
Confidence 5999999999997732 3489886555 788899999999984 22222 22 1222222 11
Q ss_pred CCceEEEEEeCCCCchhHHHh-----h---ccCCCCCCCceEEEEecchhH-Hhh--cCCC--ceEecCCCCHHHHHHHH
Q 039644 66 SRMKVLIVFDDVTCFSQLESL-----M---GSLDWLTPVSRIILTTRNKQV-LRN--WGVS--KIYEMEALEYHHALELF 132 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~~~~~l-----~---~~~~~~~~~~~iivTtR~~~~-~~~--~~~~--~~~~l~~l~~~ea~~lf 132 (192)
+++..+|||||++...+.+.. . ..++ .+ .-+|+++-.... ... .|+. -++..+.-+.+|...++
T Consensus 113 ~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~-~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il 189 (438)
T KOG2543|consen 113 RDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EP-TIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVIL 189 (438)
T ss_pred cCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CC-ceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHH
Confidence 145899999999876553321 1 1121 12 223444322111 111 1222 24556677777777777
Q ss_pred HHh
Q 039644 133 SQH 135 (192)
Q Consensus 133 ~~~ 135 (192)
.+.
T Consensus 190 ~~~ 192 (438)
T KOG2543|consen 190 SRD 192 (438)
T ss_pred hcC
Confidence 654
No 163
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.46 E-value=0.26 Score=40.57 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=39.1
Q ss_pred CchhHHHHHHHHHhh--CCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC---cC--chHHHHhhc--CCceEE
Q 039644 1 IGKTAIARAIFDKIS--GDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV---MP--YIDLNFRRL--SRMKVL 71 (192)
Q Consensus 1 iGKTtLa~~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~--~~~~l~~~l--~~~~~L 71 (192)
+|||++|+.++..+. ..|..+.|+. .++. ....+++. ...+.... .. ..+.+.... .+++++
T Consensus 205 tGKT~lA~~la~~l~~~~~~~~v~~Vt-FHps----ySYeDFI~----G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~v 275 (459)
T PRK11331 205 VGKTFVARRLAYLLTGEKAPQRVNMVQ-FHQS----YSYEDFIQ----GYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYV 275 (459)
T ss_pred CCHHHHHHHHHHHhcCCcccceeeEEe-eccc----ccHHHHhc----ccCCCCCCeEecCchHHHHHHHHHhcccCCcE
Confidence 699999999999764 3456666776 2221 33333332 11111111 11 122222222 246899
Q ss_pred EEEeCCCCch
Q 039644 72 IVFDDVTCFS 81 (192)
Q Consensus 72 lVlDdv~~~~ 81 (192)
+|+|.++...
T Consensus 276 liIDEINRan 285 (459)
T PRK11331 276 FIIDEINRAN 285 (459)
T ss_pred EEEehhhccC
Confidence 9999998543
No 164
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.46 E-value=2.9 Score=31.66 Aligned_cols=38 Identities=24% Similarity=0.171 Sum_probs=25.5
Q ss_pred HHHHHHhC-CCchHHHHHHHHhccCCHHHHHHHHHHHHh
Q 039644 151 SNVTKYAQ-GIPLALKVLSCFLHKREKEVWESAIDKLQR 188 (192)
Q Consensus 151 ~~i~~~~~-g~Plai~~~~~~l~~~~~~~w~~~l~~l~~ 188 (192)
+.+++.|+ .||+.++-+-........++-.++++++.+
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~ 266 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWK 266 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566665 788888877776655556666667766654
No 165
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=92.27 E-value=0.53 Score=34.87 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEee
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~ 26 (192)
+|||++|.+++......-..++|++.
T Consensus 34 sGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 34 SGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 59999999999976555567889873
No 166
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=2.8 Score=36.09 Aligned_cols=139 Identities=17% Similarity=0.313 Sum_probs=75.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhc-CCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRL-SRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 79 (192)
+|||-||+.|+++-..+| +++=++ +++...-+.++ ..++.+.... ..-+|+|.||.++.
T Consensus 556 CGKTLlAKAVANEag~NF-----isVKGP-------------ELlNkYVGESE--rAVR~vFqRAR~saPCVIFFDEiDa 615 (802)
T KOG0733|consen 556 CGKTLLAKAVANEAGANF-----ISVKGP-------------ELLNKYVGESE--RAVRQVFQRARASAPCVIFFDEIDA 615 (802)
T ss_pred ccHHHHHHHHhhhccCce-----EeecCH-------------HHHHHHhhhHH--HHHHHHHHHhhcCCCeEEEecchhh
Confidence 799999999999887665 331111 22222222211 0333333333 46799999999974
Q ss_pred ch-------------hHHHhhccCCCCC--CCceEEEEecchhHHhhc-----CCCceEecCCCCHHHHHHHHHHhhcCC
Q 039644 80 FS-------------QLESLMGSLDWLT--PVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSQHAFKR 139 (192)
Q Consensus 80 ~~-------------~~~~l~~~~~~~~--~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~~ea~~lf~~~~~~~ 139 (192)
.. ...++..-+.... .|.-||-.|..+++.... .-.+.+-++.-+.+|-.++++...-..
T Consensus 616 L~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~ 695 (802)
T KOG0733|consen 616 LVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNT 695 (802)
T ss_pred cCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccC
Confidence 21 1345544444332 344455555555443332 224567777778888888887766321
Q ss_pred C---CCCccHHHHHHHHHHHhCCCc
Q 039644 140 N---HPDVGYEKLSSNVTKYAQGIP 161 (192)
Q Consensus 140 ~---~~~~~~~~~~~~i~~~~~g~P 161 (192)
. .++-.+++++.. .+|.|+-
T Consensus 696 k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 696 KPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CCCCCcccCHHHHhhc--ccccCCc
Confidence 1 123345544442 3455553
No 167
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.20 E-value=0.64 Score=33.97 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=21.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEee
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~ 26 (192)
+|||+++.+++......-..++|++.
T Consensus 23 sGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 23 SGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 69999999999876555677899983
No 168
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.13 E-value=0.81 Score=37.17 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=43.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC----cC-chHHHHhhcC-CceEEEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV----MP-YIDLNFRRLS-RMKVLIVF 74 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~-~~~~l~~~l~-~~~~LlVl 74 (192)
||||||..+++.++..+. .+.+|+. + .....+- --.+.+.-..+. .+ -.+.+...+. .++-++|+
T Consensus 104 IGKSTLLLQva~~lA~~~-~vLYVsG--E-----ES~~Qik-lRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 104 IGKSTLLLQVAARLAKRG-KVLYVSG--E-----ESLQQIK-LRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred CCHHHHHHHHHHHHHhcC-cEEEEeC--C-----cCHHHHH-HHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 799999999999988776 7888862 1 1222221 223334322222 11 4555666664 56889999
Q ss_pred eCCC
Q 039644 75 DDVT 78 (192)
Q Consensus 75 Ddv~ 78 (192)
|.+.
T Consensus 175 DSIQ 178 (456)
T COG1066 175 DSIQ 178 (456)
T ss_pred eccc
Confidence 9995
No 169
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.03 E-value=5.5 Score=33.14 Aligned_cols=131 Identities=20% Similarity=0.262 Sum_probs=74.9
Q ss_pred CchhHHHHHHHHHhhCCCcc--eEEEeeccccccCCCChHHHHHHHHHHHh----cCCCCcCchHHHHhhcCC--ceEEE
Q 039644 1 IGKTAIARAIFDKISGDFEC--SCFLENVREESQRPGGLACLRQKLLSNIL----KDKNVMPYIDLNFRRLSR--MKVLI 72 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~l~~~l~~--~~~Ll 72 (192)
.|||.+...++.+....... ++++...+- ....+++..+...+. +.+.+.+....+..++.+ ..+|+
T Consensus 186 tgkt~~l~rvl~~~~~~~~~~~~v~inc~sl-----~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~ll 260 (529)
T KOG2227|consen 186 TGKTALLSRVLDSLSKSSKSPVTVYINCTSL-----TEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLL 260 (529)
T ss_pred cchHHHHHHHHHhhhhhcccceeEEEeeccc-----cchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEE
Confidence 49999999999876554433 355553321 356677777776662 222213356666666654 36899
Q ss_pred EEeCCCCchh-----HHHhhccCCCCCCCceEEEEe---------cchhHHhh-c-CCCceEecCCCCHHHHHHHHHHhh
Q 039644 73 VFDDVTCFSQ-----LESLMGSLDWLTPVSRIILTT---------RNKQVLRN-W-GVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 73 VlDdv~~~~~-----~~~l~~~~~~~~~~~~iivTt---------R~~~~~~~-~-~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
|+|..+.... +..++ .++. -+++++|+.- |.-.-... . -....+..++-+.++..++|..+.
T Consensus 261 VlDEmD~L~tr~~~vLy~lF-ewp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 261 VLDEMDHLITRSQTVLYTLF-EWPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred EechhhHHhhcccceeeeeh-hccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 9999974321 11111 1222 2345554432 21111111 0 135678889999999999998876
Q ss_pred cC
Q 039644 137 FK 138 (192)
Q Consensus 137 ~~ 138 (192)
..
T Consensus 339 ~~ 340 (529)
T KOG2227|consen 339 SE 340 (529)
T ss_pred hc
Confidence 43
No 170
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.00 E-value=0.97 Score=33.37 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHhhCCC------cceEEEee
Q 039644 1 IGKTAIARAIFDKISGDF------ECSCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F------~~~~wv~~ 26 (192)
+|||+||.+++....... ..++|++.
T Consensus 30 sGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 30 SGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred CChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 699999999988754444 56788873
No 171
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.99 E-value=3.4 Score=37.21 Aligned_cols=67 Identities=7% Similarity=-0.014 Sum_probs=36.2
Q ss_pred CceEEEEEeCCCCch---------h-HHHhhccCCCCCCCceEEEEecchhHHh-------hcCCCceEecCCCCHHHHH
Q 039644 67 RMKVLIVFDDVTCFS---------Q-LESLMGSLDWLTPVSRIILTTRNKQVLR-------NWGVSKIYEMEALEYHHAL 129 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~~~~iivTtR~~~~~~-------~~~~~~~~~l~~l~~~ea~ 129 (192)
+.+.+|++|+++... + .+.+.+.+ .. ..-++|-+|....... ....-..+.++..+.++..
T Consensus 265 ~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~-g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~ 342 (852)
T TIGR03346 265 EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-AR-GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTI 342 (852)
T ss_pred CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hc-CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHH
Confidence 468999999997432 1 12222222 11 2234444443332211 1123356788888999988
Q ss_pred HHHHHh
Q 039644 130 ELFSQH 135 (192)
Q Consensus 130 ~lf~~~ 135 (192)
.++...
T Consensus 343 ~iL~~~ 348 (852)
T TIGR03346 343 SILRGL 348 (852)
T ss_pred HHHHHH
Confidence 887654
No 172
>PRK04296 thymidine kinase; Provisional
Probab=91.98 E-value=0.2 Score=36.24 Aligned_cols=97 Identities=12% Similarity=-0.025 Sum_probs=46.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCC-----C-cCchHHHHhhcCCceEEEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKN-----V-MPYIDLNFRRLSRMKVLIVF 74 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~-~~~~~~l~~~l~~~~~LlVl 74 (192)
.||||+|..++.+...+...++.+. .. ++.......+...++..-. . .+....+.. ..++.-++|+
T Consensus 13 sGKTT~~l~~~~~~~~~g~~v~i~k-~~------~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dvviI 84 (190)
T PRK04296 13 SGKSTELLQRAYNYEERGMKVLVFK-PA------IDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDCVLI 84 (190)
T ss_pred CHHHHHHHHHHHHHHHcCCeEEEEe-cc------ccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCEEEE
Confidence 5999999999998755544444342 10 0000001112222221100 0 112222322 2224458999
Q ss_pred eCCCCc--hhHHHhhccCCCCCCCceEEEEecchh
Q 039644 75 DDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQ 107 (192)
Q Consensus 75 Ddv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~~ 107 (192)
|.+.-. ++...+...+. ..|..|++|.+...
T Consensus 85 DEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 85 DEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred EccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 999643 22333333221 35678999988743
No 173
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.91 E-value=0.51 Score=37.87 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=53.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCC--
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVT-- 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-- 78 (192)
.|||.|+-.+|+.+...=... .....++..+-+.+.......+.+..+...+.++..||+||.+.
T Consensus 73 ~GKT~Lmd~f~~~lp~~~k~R-------------~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~ 139 (362)
T PF03969_consen 73 RGKTMLMDLFYDSLPIKRKRR-------------VHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVT 139 (362)
T ss_pred CchhHHHHHHHHhCCcccccc-------------ccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeecc
Confidence 599999999999653311111 23334455554444433322335666777778888899999986
Q ss_pred Cchh---HHHhhccCCCCCCCceEEEEecchhHHh
Q 039644 79 CFSQ---LESLMGSLDWLTPVSRIILTTRNKQVLR 110 (192)
Q Consensus 79 ~~~~---~~~l~~~~~~~~~~~~iivTtR~~~~~~ 110 (192)
+..+ +..+...+- ..|. +||+|.|.....
T Consensus 140 DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~P~~ 171 (362)
T PF03969_consen 140 DIADAMILKRLFEALF--KRGV-VLVATSNRPPED 171 (362)
T ss_pred chhHHHHHHHHHHHHH--HCCC-EEEecCCCChHH
Confidence 2222 444544432 3455 666665544433
No 174
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.75 E-value=0.93 Score=40.23 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=18.2
Q ss_pred CCCceEecCCCCHHHHHHHHHHhh
Q 039644 113 GVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 113 ~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
.....+++.+++.++-.+++..+.
T Consensus 482 ~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 482 DRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCeeEEecCCCCHHHHHHHHHHHH
Confidence 344688999999988888876543
No 175
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=91.75 E-value=1.8 Score=38.79 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=88.3
Q ss_pred CchhHHHHHHHHHhhCCC----cceEEEeecc-ccccCCCChH-HHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEE
Q 039644 1 IGKTAIARAIFDKISGDF----ECSCFLENVR-EESQRPGGLA-CLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVF 74 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F----~~~~wv~~~~-~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVl 74 (192)
.||||+...++-...++. +..+++..-. ..... +... .+...+...+.....-..........++..++|+.+
T Consensus 233 sGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~l~~g~~llLl 311 (824)
T COG5635 233 SGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARK-FEKQLSLIDYLAEELFSQGIAKQLIEAHQELLKTGKLLLLL 311 (824)
T ss_pred CCceehHHHHHHHhccCcCCcccCceeeechhHHHhhh-hHhhccHHHHHHHHHhccCCcchhhHHHHHHHhccchhhHh
Confidence 599999999988543222 2334443110 00000 1111 222222222222221122334345788999999999
Q ss_pred eCCCCchh---------HHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecCCCCHHHHHHHHH--------Hhhc
Q 039644 75 DDVTCFSQ---------LESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFS--------QHAF 137 (192)
Q Consensus 75 Ddv~~~~~---------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~l~~~ea~~lf~--------~~~~ 137 (192)
|.++.... +..+.+.+ +.+++|+|+|..........-..+++..+.+........ ...+
T Consensus 312 DGlDe~~~~~~~~~~~~i~~f~~~~----~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~~~~~~~~ 387 (824)
T COG5635 312 DGLDELEPKNQRALIREINKFLQEY----PDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLDAFIEDWF 387 (824)
T ss_pred hccchhhhhhHHHHHHHHHHHhhhc----cCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 99986532 33333333 467899999875544443223334444444443332221 1111
Q ss_pred CCCCCC-----ccHHHHHHHHHHHhCCCchHHHHHHHHhcc------CCHHHHHHHHHHH
Q 039644 138 KRNHPD-----VGYEKLSSNVTKYAQGIPLALKVLSCFLHK------REKEVWESAIDKL 186 (192)
Q Consensus 138 ~~~~~~-----~~~~~~~~~i~~~~~g~Plai~~~~~~l~~------~~~~~w~~~l~~l 186 (192)
...... ..+......-++.....|+.+.+.+..-.. ...+-++.+++.+
T Consensus 388 ~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~ 447 (824)
T COG5635 388 GDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDAL 447 (824)
T ss_pred cccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHH
Confidence 111101 111122334455567889999998854442 1155566655544
No 176
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.50 E-value=0.4 Score=40.79 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=42.8
Q ss_pred CchhHHHHHHHHHhhCCC-cceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--cC-------chHHHHhhc--CCc
Q 039644 1 IGKTAIARAIFDKISGDF-ECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--MP-------YIDLNFRRL--SRM 68 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~-------~~~~l~~~l--~~~ 68 (192)
+|||+|+..+++.+.... ++.+++..+.+- +..+.++...+--.+.....+ .. ..-.+.+++ .++
T Consensus 427 aGKTtLL~~IAn~i~~n~~~~~~ivvLIgER---peEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~ 503 (672)
T PRK12678 427 AGKTTILQNIANAITTNNPECHLMVVLVDER---PEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGK 503 (672)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEEEEeCc---hhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 599999999999775443 444455545442 234555544431111111111 11 222344444 578
Q ss_pred eEEEEEeCCCCc
Q 039644 69 KVLIVFDDVTCF 80 (192)
Q Consensus 69 ~~LlVlDdv~~~ 80 (192)
.+||++|++...
T Consensus 504 dVlillDSlTR~ 515 (672)
T PRK12678 504 DVVVLLDSITRL 515 (672)
T ss_pred CEEEEEeCchHH
Confidence 999999999644
No 177
>PHA00729 NTP-binding motif containing protein
Probab=91.37 E-value=1.1 Score=33.46 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||||..+++++-
T Consensus 28 vGKT~LA~aLa~~l~ 42 (226)
T PHA00729 28 SGKTTYALKVARDVF 42 (226)
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999999753
No 178
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.34 E-value=0.61 Score=41.17 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=38.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC--chHHHHhhcCCc-eEEEEEeC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP--YIDLNFRRLSRM-KVLIVFDD 76 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~--~~~~l~~~l~~~-~~LlVlDd 76 (192)
+|||++|+.++..+... .+.++ ++..... ... ..+.+..+. .. ....+...++.+ ..+++||+
T Consensus 499 vGKT~lAk~LA~~l~~~---~i~id-~se~~~~-~~~--------~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDE 565 (758)
T PRK11034 499 VGKTEVTVQLSKALGIE---LLRFD-MSEYMER-HTV--------SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDE 565 (758)
T ss_pred CCHHHHHHHHHHHhCCC---cEEee-chhhccc-ccH--------HHHcCCCCCcccccccchHHHHHHhCCCcEEEecc
Confidence 69999999999977432 23333 3332211 111 222222222 11 112233344433 46999999
Q ss_pred CCCch--hHHHhhc
Q 039644 77 VTCFS--QLESLMG 88 (192)
Q Consensus 77 v~~~~--~~~~l~~ 88 (192)
++..+ .++.+..
T Consensus 566 ieka~~~v~~~LLq 579 (758)
T PRK11034 566 IEKAHPDVFNLLLQ 579 (758)
T ss_pred HhhhhHHHHHHHHH
Confidence 98654 2444443
No 179
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.24 E-value=1.6 Score=33.63 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=54.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh--cCCC-----C-cC---chHHHHhhcC-Cc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL--KDKN-----V-MP---YIDLNFRRLS-RM 68 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~-----~-~~---~~~~l~~~l~-~~ 68 (192)
+|||||.+.++..+... .+.+++. ..... ..+-..++..... .+.. + .+ -..-+...+. ..
T Consensus 122 ~GKttl~~~l~~~~~~~-~G~i~~~-g~~v~-----~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~~~ 194 (270)
T TIGR02858 122 CGKTTLLRDLARILSTG-ISQLGLR-GKKVG-----IVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRSMS 194 (270)
T ss_pred CCHHHHHHHHhCccCCC-CceEEEC-CEEee-----cchhHHHHHHHhcccccccccccccccccchHHHHHHHHHHhCC
Confidence 59999999999876533 4556664 22211 1111122222211 1111 1 11 1222333333 47
Q ss_pred eEEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhH
Q 039644 69 KVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQV 108 (192)
Q Consensus 69 ~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~ 108 (192)
+-++++|.+.....+..+...+. .|..+|+||....+
T Consensus 195 P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 195 PDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 88999999987776766655542 46779999986554
No 180
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=91.12 E-value=0.9 Score=33.68 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=41.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh-------cC-CCC--cC----------chHH
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL-------KD-KNV--MP----------YIDL 60 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~-------~~-~~~--~~----------~~~~ 60 (192)
+|||+|+.++++..... .++++. +++ .+..+.++...+...-. .. .++ .. ..++
T Consensus 26 ~GKt~Ll~~i~~~~~~d--~~V~~~-iGe---r~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEy 99 (215)
T PF00006_consen 26 VGKTVLLQEIANNQDAD--VVVYAL-IGE---RGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEY 99 (215)
T ss_dssp SSHHHHHHHHHHHCTTT--EEEEEE-ESE---CHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhccccc--ceeeee-ccc---cchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhHH
Confidence 59999999999987533 335554 222 11345566655543311 01 111 11 2333
Q ss_pred HHhhcCCceEEEEEeCCCCch
Q 039644 61 NFRRLSRMKVLIVFDDVTCFS 81 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~ 81 (192)
++. .+++.|+++||+....
T Consensus 100 frd--~G~dVlli~Dsltr~a 118 (215)
T PF00006_consen 100 FRD--QGKDVLLIIDSLTRWA 118 (215)
T ss_dssp HHH--TTSEEEEEEETHHHHH
T ss_pred Hhh--cCCceeehhhhhHHHH
Confidence 333 7899999999996543
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=91.10 E-value=0.26 Score=36.18 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=46.6
Q ss_pred CchhHHHHHHHHH--hhCCCcceEEEeecccc--ccC--CCC----hHHHHHHHHHHHhcCCCCcCchHHH---------
Q 039644 1 IGKTAIARAIFDK--ISGDFECSCFLENVREE--SQR--PGG----LACLRQKLLSNILKDKNVMPYIDLN--------- 61 (192)
Q Consensus 1 iGKTtLa~~~~~~--~~~~F~~~~wv~~~~~~--~~~--~~~----~~~~~~~l~~~~~~~~~~~~~~~~l--------- 61 (192)
.|||.||...+-+ ....|+.++++.-.-+. ... |-+ ....+..+.+-+..--.. +..+.+
T Consensus 30 TGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~-~~~~~~~~~~~Ie~~ 108 (205)
T PF02562_consen 30 TGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGK-EKLEELIQNGKIEIE 108 (205)
T ss_dssp SSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-T-TCHHHHHHTTSEEEE
T ss_pred CcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhCh-HhHHHHhhcCeEEEE
Confidence 5999999999874 35778888777522211 000 111 111122222222211000 011111
Q ss_pred -HhhcCC---ceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecc
Q 039644 62 -FRRLSR---MKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRN 105 (192)
Q Consensus 62 -~~~l~~---~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~ 105 (192)
..++++ .+..+|+|.+.+. +++..+... .+.+||+|++--.
T Consensus 109 ~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 109 PLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp EGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred ehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 123333 3679999999865 457776544 4779999998743
No 182
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.09 E-value=2.5 Score=37.65 Aligned_cols=115 Identities=19% Similarity=0.167 Sum_probs=58.9
Q ss_pred CceEEEEEeCCCCchh---H----HHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecCCCCHHHHHHHHHHhhcCC
Q 039644 67 RMKVLIVFDDVTCFSQ---L----ESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSQHAFKR 139 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~---~----~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~ 139 (192)
+.+.|++||......+ - ..+...+. ..++.+|+||..............+.-..+..++. .+...+.+..
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~-~l~~~Ykl~~ 482 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEE-TLRPTYRLLI 482 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecC-cCcEEEEEee
Confidence 5778999999975433 1 22222222 24678999999877665542211111111111110 1111111111
Q ss_pred CCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCHHHHHHHHHHHHh
Q 039644 140 NHPDVGYEKLSSNVTKYAQGIPLALKVLSCFLHKREKEVWESAIDKLQR 188 (192)
Q Consensus 140 ~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~ 188 (192)
..+ -..++-.|++.+ |+|-.+.--|..+-.......++++++++.
T Consensus 483 G~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 483 GIP---GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred CCC---CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 111 134566677665 888888888876655455566666666543
No 183
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=1.3 Score=39.60 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC---cCchHHHHhhcCCceE-EEEEeC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV---MPYIDLNFRRLSRMKV-LIVFDD 76 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~l~~~~~-LlVlDd 76 (192)
+|||.||+.++..+-...+..+-++ +.++.. ...+.+.++. .+....|-+.++.++| ++.||+
T Consensus 602 vGKt~lAkaLA~~~Fgse~~~IriD-----------mse~~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfde 668 (898)
T KOG1051|consen 602 VGKTELAKALAEYVFGSEENFIRLD-----------MSEFQE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEE 668 (898)
T ss_pred hhHHHHHHHHHHHHcCCccceEEec-----------hhhhhh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEec
Confidence 6999999999998855555555554 333333 3334344333 3366788888888876 788899
Q ss_pred CCCc
Q 039644 77 VTCF 80 (192)
Q Consensus 77 v~~~ 80 (192)
++.-
T Consensus 669 IEkA 672 (898)
T KOG1051|consen 669 IEKA 672 (898)
T ss_pred hhhc
Confidence 9854
No 184
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.05 E-value=0.25 Score=35.12 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|+.++..+...+...++++
T Consensus 18 sGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 18 SGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 6999999999999887777777764
No 185
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.04 E-value=0.16 Score=40.09 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=20.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||.+++......-...+|++
T Consensus 66 sGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 66 SGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 6999999999987655556778887
No 186
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.03 E-value=0.14 Score=36.49 Aligned_cols=113 Identities=13% Similarity=0.112 Sum_probs=55.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC---cC----chHHHHhhcCCceEEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV---MP----YIDLNFRRLSRMKVLIV 73 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~----~~~~l~~~l~~~~~LlV 73 (192)
+|||++|..++.+... ..+++.... ..-.+....+.......+.. .+ +...+..... ..-+++
T Consensus 12 sGKS~~a~~l~~~~~~---~~~~iat~~------~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~-~~~~Vl 81 (170)
T PRK05800 12 SGKSRFAERLAAQSGL---QVLYIATAQ------PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA-PGRCVL 81 (170)
T ss_pred ccHHHHHHHHHHHcCC---CcEeCcCCC------CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC-CCCEEE
Confidence 6999999999887532 234443211 22334445554443332222 22 2222322233 233788
Q ss_pred EeCCCCc----------hhH----HHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecCCCCHHHHHHHHHHhhc
Q 039644 74 FDDVTCF----------SQL----ESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 74 lDdv~~~----------~~~----~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
+|.+... ..| ..+...+. ..+..+|+++.. ...+..+.+.....|....+
T Consensus 82 ID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~E------------vg~g~vp~~~~~r~~~d~lG 145 (170)
T PRK05800 82 VDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNE------------VGMGIVPEYRLGRHFRDIAG 145 (170)
T ss_pred ehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcC------------CcccccCCCHHHHHHHHHHH
Confidence 8887422 111 22333332 234456777643 33455555666666766553
No 187
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.70 E-value=0.97 Score=36.00 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=52.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHH----HHHHHHhcCCCC-cCchHHHHhhcCCceEEEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQ----KLLSNILKDKNV-MPYIDLNFRRLSRMKVLIVFD 75 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~-~~~~~~l~~~l~~~~~LlVlD 75 (192)
+||||+...+...+.......++.. - +..++.. .+..+.. -+.. ......++..++..+=.|++|
T Consensus 133 SGKTT~l~al~~~i~~~~~~~i~ti-E--------dp~E~~~~~~~~~i~q~e-vg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 133 SGKSTTLASMIDYINKNAAGHIITI-E--------DPIEYVHRNKRSLINQRE-VGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred CCHHHHHHHHHHhhCcCCCCEEEEE-c--------CChhhhccCccceEEccc-cCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 5999999999988766655666653 1 1111110 0000000 0111 225566777888899999999
Q ss_pred CCCCchhHHHhhccCCCCCCCceEEEEecchh
Q 039644 76 DVTCFSQLESLMGSLDWLTPVSRIILTTRNKQ 107 (192)
Q Consensus 76 dv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~ 107 (192)
.+.+...+...... ...|..++.|....+
T Consensus 203 Eird~~~~~~~l~a---a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 203 EMRDLETVELALTA---AETGHLVFGTLHTNS 231 (343)
T ss_pred CCCCHHHHHHHHHH---HHcCCcEEEEEcCCC
Confidence 99987765543332 123444555554433
No 188
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=90.60 E-value=0.85 Score=35.13 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHhh----CCCcceEEEeeccccccCCCChHHHHHHHHHHHhcC--------CCC---cC-----chHH
Q 039644 1 IGKTAIARAIFDKIS----GDFECSCFLENVREESQRPGGLACLRQKLLSNILKD--------KNV---MP-----YIDL 60 (192)
Q Consensus 1 iGKTtLa~~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~---~~-----~~~~ 60 (192)
+|||+|+..++++.. .+-+.++++- +++.. ....++...+...-.-. .++ .. ..-.
T Consensus 80 vGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR~---rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~a 155 (276)
T cd01135 80 LPHNELAAQIARQAGVVGEEENFAVVFAA-MGITM---EDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALT 155 (276)
T ss_pred CChhHHHHHHHHhhhccccCCCCEEEEEE-ecccc---HHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHH
Confidence 699999999988643 2224556654 43321 35666666665431100 010 00 2222
Q ss_pred HHhhc---CCceEEEEEeCCCCch
Q 039644 61 NFRRL---SRMKVLIVFDDVTCFS 81 (192)
Q Consensus 61 l~~~l---~~~~~LlVlDdv~~~~ 81 (192)
+.+++ .+++.|+++||+....
T Consensus 156 iAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 156 TAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHHHhccCCeEEEEEcChhHHH
Confidence 44444 3689999999996543
No 189
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=90.51 E-value=0.85 Score=37.73 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=42.2
Q ss_pred CchhHHHHHHHHHhhCCCc-ceEEEeeccccccCCCChHHHHHHHHHHHhc--------CCCC--cC------chHHHHh
Q 039644 1 IGKTAIARAIFDKISGDFE-CSCFLENVREESQRPGGLACLRQKLLSNILK--------DKNV--MP------YIDLNFR 63 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~--~~------~~~~l~~ 63 (192)
+|||+|+.+++........ .+++. .+++-. ..+.+++..+...-.- ..++ .. ..-.+.+
T Consensus 154 ~GKt~L~~~~~~~~~~~~~~v~V~a-lIGER~---rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAE 229 (461)
T TIGR01039 154 VGKTVLIQELINNIAKEHGGYSVFA-GVGERT---REGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAE 229 (461)
T ss_pred CChHHHHHHHHHHHHhcCCCeEEEE-EecCCc---hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999987654433 34443 343321 3466666666432110 0011 00 2223444
Q ss_pred hc---CCceEEEEEeCCCCc
Q 039644 64 RL---SRMKVLIVFDDVTCF 80 (192)
Q Consensus 64 ~l---~~~~~LlVlDdv~~~ 80 (192)
++ ++++.|+++||+...
T Consensus 230 yfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 230 YFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHhcCCeeEEEecchhHH
Confidence 44 457999999999643
No 190
>PTZ00202 tuzin; Provisional
Probab=90.49 E-value=3.5 Score=34.35 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=68.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--cCchHHHHhhc-----C-CceEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--MPYIDLNFRRL-----S-RMKVLI 72 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~~l-----~-~~~~Ll 72 (192)
+|||||++.+..... ...++.+. .+..+++..++..++..... .++...+.+.+ . +++.+|
T Consensus 297 ~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVL 365 (550)
T PTZ00202 297 CGKSSLCRSAVRKEG----MPAVFVDV-------RGTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLL 365 (550)
T ss_pred CCHHHHHHHHHhcCC----ceEEEECC-------CCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 699999999997664 22444333 35689999999999864332 12333333333 2 455555
Q ss_pred EEeCCCCchhHHHh---hccCCCCCCCceEEEEecchhHHhhc---CCCceEecCCCCHHHHHHHHH
Q 039644 73 VFDDVTCFSQLESL---MGSLDWLTPVSRIILTTRNKQVLRNW---GVSKIYEMEALEYHHALELFS 133 (192)
Q Consensus 73 VlDdv~~~~~~~~l---~~~~~~~~~~~~iivTtR~~~~~~~~---~~~~~~~l~~l~~~ea~~lf~ 133 (192)
|+-= .+.+.+... .-.+-....-|+|++---.+...... +.-..|-+++++..+|.....
T Consensus 366 II~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~ 431 (550)
T PTZ00202 366 VLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQ 431 (550)
T ss_pred EEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHh
Confidence 5543 322222111 11122234568899877665543332 223467788999988776543
No 191
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=90.45 E-value=1.7 Score=38.73 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=18.8
Q ss_pred CCCceEecCCCCHHHHHHHHHHhh
Q 039644 113 GVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 113 ~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
+....+.+.+++.++-.++..++.
T Consensus 483 ~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 483 DRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cceeeeecCCCCHHHHHHHHHHhh
Confidence 345788999999999888876655
No 192
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.43 E-value=0.2 Score=33.05 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+++++
T Consensus 10 sGKST~a~~La~~~ 23 (121)
T PF13207_consen 10 SGKSTLAKELAERL 23 (121)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999976
No 193
>COG1158 Rho Transcription termination factor [Transcription]
Probab=90.42 E-value=0.67 Score=36.65 Aligned_cols=75 Identities=21% Similarity=0.382 Sum_probs=48.3
Q ss_pred CchhHHHHHHHHHhhCCC-cceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC------cC----chHHHHhhcC-Cc
Q 039644 1 IGKTAIARAIFDKISGDF-ECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV------MP----YIDLNFRRLS-RM 68 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~----~~~~l~~~l~-~~ 68 (192)
.|||+|.+.+++.+..+. ++..||-.+.+ .|.-+.++++..--++....-+ .. .++.-++... ++
T Consensus 184 aGKT~lLq~IA~aIt~N~Pe~~LiVLLIDE---RPEEVTdmqrsV~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~k 260 (422)
T COG1158 184 AGKTTLLQNIANAITTNHPECELIVLLIDE---RPEEVTDMQRSVKGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGK 260 (422)
T ss_pred CCchHHHHHHHHHHhcCCCceEEEEEEecC---CchHHHHHHHhhcceEEeecCCCcchhhHHHHHHHHHHHHHHHHcCC
Confidence 499999999999887666 57788776533 3456777766665333222111 11 4455555554 56
Q ss_pred eEEEEEeCCC
Q 039644 69 KVLIVFDDVT 78 (192)
Q Consensus 69 ~~LlVlDdv~ 78 (192)
...|.||.+.
T Consensus 261 DVVILLDSIT 270 (422)
T COG1158 261 DVVILLDSIT 270 (422)
T ss_pred cEEEEehhHH
Confidence 8889999884
No 194
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=90.30 E-value=0.8 Score=37.97 Aligned_cols=75 Identities=20% Similarity=0.119 Sum_probs=42.7
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEeeccccccCCCChHHHHHHHHHHHhc--------CCCC--cC------chHHHHh
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLENVREESQRPGGLACLRQKLLSNILK--------DKNV--MP------YIDLNFR 63 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~--~~------~~~~l~~ 63 (192)
+|||+|+.+++.....+ -+.+++.. +++- ...+.++...+...-.- ..++ .. ..-.+.+
T Consensus 154 ~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGER---~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAE 229 (461)
T PRK12597 154 VGKTVLMMELIFNISKQHSGSSVFAG-VGER---SREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAE 229 (461)
T ss_pred CChhHHHHHHHHHHHhhCCCEEEEEc-CCcc---hHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999976533 34555553 4331 13456666655443110 0011 00 2333445
Q ss_pred hc---CCceEEEEEeCCCC
Q 039644 64 RL---SRMKVLIVFDDVTC 79 (192)
Q Consensus 64 ~l---~~~~~LlVlDdv~~ 79 (192)
++ .+++.|+++||+..
T Consensus 230 yfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 230 YLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHhcCCceEEEeccchH
Confidence 55 37899999999943
No 195
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=90.29 E-value=0.65 Score=35.85 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=43.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHH-H---hcCCCC-cC----chHHHHhhcCCceEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSN-I---LKDKNV-MP----YIDLNFRRLSRMKVL 71 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~-~---~~~~~~-~~----~~~~l~~~l~~~~~L 71 (192)
+||||+|.+++-.....-...+|++.-+. +....+. .+... + .-..+. .+ ++..+.......--|
T Consensus 71 sGKT~lal~~~~~aq~~g~~a~fIDtE~~-----l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~L 144 (279)
T COG0468 71 SGKTTLALQLVANAQKPGGKAAFIDTEHA-----LDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDL 144 (279)
T ss_pred cchhhHHHHHHHHhhcCCCeEEEEeCCCC-----CCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCE
Confidence 59999999998877666668899984333 3444433 33333 2 111121 11 444444444444569
Q ss_pred EEEeCCC
Q 039644 72 IVFDDVT 78 (192)
Q Consensus 72 lVlDdv~ 78 (192)
+|+|.+.
T Consensus 145 vVVDSva 151 (279)
T COG0468 145 LVVDSVA 151 (279)
T ss_pred EEEecCc
Confidence 9999995
No 196
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=90.27 E-value=0.67 Score=41.05 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=59.1
Q ss_pred CceEEEEEeCCCCchh---HH----HhhccCCCCCCCceEEEEecchhHHhhcC-CCceEecCCCCHHHHHHHHHHhhcC
Q 039644 67 RMKVLIVFDDVTCFSQ---LE----SLMGSLDWLTPVSRIILTTRNKQVLRNWG-VSKIYEMEALEYHHALELFSQHAFK 138 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~---~~----~l~~~~~~~~~~~~iivTtR~~~~~~~~~-~~~~~~l~~l~~~ea~~lf~~~~~~ 138 (192)
+.+-|++||.+-...+ -. .+...+. ..|+.+|+||.......... ...+.. ..+..++. .+-..+-+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~-~~~~~d~~-~l~p~Ykl~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVEN-ASVLFDEE-TLSPTYKLL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEE-eEEEEcCC-CCceEEEEC
Confidence 5789999999975432 22 2222222 24678999999877654431 111111 11111110 110011111
Q ss_pred CCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCHHHHHHHHHHHHh
Q 039644 139 RNHPDVGYEKLSSNVTKYAQGIPLALKVLSCFLHKREKEVWESAIDKLQR 188 (192)
Q Consensus 139 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~ 188 (192)
...+ -..++-.|++.+ |+|-.|.--|..+........++++++++.
T Consensus 477 ~G~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 477 KGIP---GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCCC---CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 134566677665 888888888876665455566666666653
No 197
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.19 E-value=0.96 Score=33.29 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=19.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+||.+++......-..++|++
T Consensus 30 sGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 30 TGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 6999999999997654445667886
No 198
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=90.13 E-value=0.48 Score=37.32 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||.+++......-...+|++
T Consensus 64 sGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 64 SGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp SSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CchhhhHHHHHHhhhcccceeEEec
Confidence 6999999999998765556788987
No 199
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=0.6 Score=39.87 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=15.4
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+|||.||+.++.+..-.|
T Consensus 234 CGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 234 CGKTSLANAIAGELGVPF 251 (802)
T ss_pred ccHHHHHHHHhhhcCCce
Confidence 699999999999876554
No 200
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.08 E-value=3.9 Score=36.88 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||++|+.++.++..
T Consensus 210 vGKT~l~~~la~~i~~ 225 (857)
T PRK10865 210 VGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 6999999999998643
No 201
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.06 E-value=0.18 Score=39.68 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=19.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||.+++......-..++|++
T Consensus 66 sGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 66 SGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 6999999999887655545677886
No 202
>PRK09354 recA recombinase A; Provisional
Probab=89.82 E-value=0.24 Score=39.42 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=20.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||.+++......-...+|++
T Consensus 71 sGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 71 SGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 6999999999987655556778887
No 203
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=89.78 E-value=0.91 Score=37.61 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=42.5
Q ss_pred CchhHHHHHHHHHhhCCCc-ceEEEeeccccccCCCChHHHHHHHHHHHhcC--------CCC--cC------chHHHHh
Q 039644 1 IGKTAIARAIFDKISGDFE-CSCFLENVREESQRPGGLACLRQKLLSNILKD--------KNV--MP------YIDLNFR 63 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~--~~------~~~~l~~ 63 (192)
+|||+|+.+++.......+ .+++. .+++- ...+.+++..++..-.-. .+. .. ..-.+.+
T Consensus 155 vGKt~Ll~~i~~~~~~~~~~v~V~~-liGER---~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAE 230 (463)
T PRK09280 155 VGKTVLIQELINNIAKEHGGYSVFA-GVGER---TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAE 230 (463)
T ss_pred CChhHHHHHHHHHHHhcCCCEEEEE-EeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999887654433 33433 24331 145666666665431100 011 00 2223444
Q ss_pred hc---CCceEEEEEeCCCCc
Q 039644 64 RL---SRMKVLIVFDDVTCF 80 (192)
Q Consensus 64 ~l---~~~~~LlVlDdv~~~ 80 (192)
++ .+++.|+++||+...
T Consensus 231 yfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 231 YFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHhcCCceEEEecchHHH
Confidence 44 568999999999543
No 204
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=89.75 E-value=1.3 Score=35.41 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=24.9
Q ss_pred CchhHHHHHHHHHh--hCC----CcceEEEeeccccccCCCChHHHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI--SGD----FECSCFLENVREESQRPGGLACLRQKLLSNIL 49 (192)
Q Consensus 1 iGKTtLa~~~~~~~--~~~----F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~ 49 (192)
+|||+|+.+++-.. ... -..++|++.-.. +....+.+ +.+.+.
T Consensus 137 sGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t-----F~peRl~~-ia~~~g 185 (344)
T PLN03187 137 SGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT-----FRPDRIVP-IAERFG 185 (344)
T ss_pred CChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC-----CCHHHHHH-HHHHcC
Confidence 69999999987532 211 136788873222 45555543 444443
No 205
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.65 E-value=1.4 Score=35.59 Aligned_cols=70 Identities=7% Similarity=0.149 Sum_probs=39.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCc-----CchHHHHhhcC-CceEEEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVM-----PYIDLNFRRLS-RMKVLIVF 74 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~l~~~l~-~~~~LlVl 74 (192)
+|||||+.+++..+...-..++|++. . .....+... .+.+....+.. .....+...+. .++-++|+
T Consensus 93 ~GKStLllq~a~~~a~~g~~VlYvs~-E------Es~~qi~~R-a~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVI 164 (372)
T cd01121 93 IGKSTLLLQVAARLAKRGGKVLYVSG-E------ESPEQIKLR-ADRLGISTENLYLLAETNLEDILASIEELKPDLVII 164 (372)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEC-C------cCHHHHHHH-HHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEE
Confidence 69999999999976655456777762 1 122222211 22332211111 13344444443 36779999
Q ss_pred eCCC
Q 039644 75 DDVT 78 (192)
Q Consensus 75 Ddv~ 78 (192)
|.+.
T Consensus 165 DSIq 168 (372)
T cd01121 165 DSIQ 168 (372)
T ss_pred cchH
Confidence 9985
No 206
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=89.61 E-value=14 Score=32.47 Aligned_cols=128 Identities=12% Similarity=0.155 Sum_probs=75.8
Q ss_pred CchhHHHHHHHHHhh-----CCCcce--EEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cCchHHHHhhcC-----C
Q 039644 1 IGKTAIARAIFDKIS-----GDFECS--CFLENVREESQRPGGLACLRQKLLSNILKDKNV-MPYIDLNFRRLS-----R 67 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-----~~F~~~--~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~l~-----~ 67 (192)
+|||..+..|.+.++ ..-+.. +.+..+.- ....+++..|...+.+.... ....+.+..++. .
T Consensus 433 tGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l-----~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~ 507 (767)
T KOG1514|consen 433 TGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL-----ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKR 507 (767)
T ss_pred CCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee-----cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCC
Confidence 599999999999532 112222 33433322 46889999999988877655 335566666664 3
Q ss_pred ceEEEEEeCCCCc-----hhHHHhhccCCCCCCCceEEEEecc--h-----h----HHhhcCCCceEecCCCCHHHHHHH
Q 039644 68 MKVLIVFDDVTCF-----SQLESLMGSLDWLTPVSRIILTTRN--K-----Q----VLRNWGVSKIYEMEALEYHHALEL 131 (192)
Q Consensus 68 ~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~iivTtR~--~-----~----~~~~~~~~~~~~l~~l~~~ea~~l 131 (192)
..+++++|+++.. +.+..|... | ...++|++|.+=. - . +....+ -..+..++.++.+..++
T Consensus 508 ~~~VvLiDElD~Lvtr~QdVlYn~fdW-p-t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~I 584 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRSQDVLYNIFDW-P-TLKNSKLVVIAIANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEI 584 (767)
T ss_pred CCEEEEeccHHHHhcccHHHHHHHhcC-C-cCCCCceEEEEecccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHH
Confidence 5789999999743 224555432 2 3466777665411 0 0 111111 23466777777777776
Q ss_pred HHHhh
Q 039644 132 FSQHA 136 (192)
Q Consensus 132 f~~~~ 136 (192)
...+.
T Consensus 585 i~~RL 589 (767)
T KOG1514|consen 585 ISARL 589 (767)
T ss_pred HHHhh
Confidence 65554
No 207
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=89.42 E-value=0.33 Score=32.98 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+.....
T Consensus 10 sGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 10 SGKSTLAKRLAKRLG 24 (143)
T ss_dssp SSHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHCC
Confidence 699999999987654
No 208
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=89.37 E-value=1.6 Score=34.36 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=37.8
Q ss_pred CchhHHHHHHHHHh--hC----CCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC---------------ch
Q 039644 1 IGKTAIARAIFDKI--SG----DFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP---------------YI 58 (192)
Q Consensus 1 iGKTtLa~~~~~~~--~~----~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~---------------~~ 58 (192)
+|||+|+.+++-.. .. .=..++|++.-.. +....+. .+.+.+..+.+. .+ .+
T Consensus 107 sGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~-----f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l 180 (313)
T TIGR02238 107 CGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT-----FRPDRIR-AIAERFGVDPDAVLDNILYARAYTSEHQMELL 180 (313)
T ss_pred CCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC-----CCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHHHHHHHH
Confidence 69999999987532 21 1136788873222 4444444 344444332211 11 22
Q ss_pred HHHHhhcC-CceEEEEEeCCC
Q 039644 59 DLNFRRLS-RMKVLIVFDDVT 78 (192)
Q Consensus 59 ~~l~~~l~-~~~~LlVlDdv~ 78 (192)
..+...+. .+.-|+|+|.+.
T Consensus 181 ~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 181 DYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHhhccCCCEEEEEcch
Confidence 33333333 345589999985
No 209
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=89.34 E-value=1.8 Score=33.96 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=18.7
Q ss_pred CchhHHHHHHHHHhhCCC------cceEEEee
Q 039644 1 IGKTAIARAIFDKISGDF------ECSCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F------~~~~wv~~ 26 (192)
+|||+|+.+++....... ..++|++.
T Consensus 113 sGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 113 SGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred CCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 699999999988643221 36788873
No 210
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=89.29 E-value=0.43 Score=33.48 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=20.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||+.+.+++.+.-..+.+++
T Consensus 13 sGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 13 SGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp SSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEec
Confidence 5999999999999887766667765
No 211
>PRK06762 hypothetical protein; Provisional
Probab=88.90 E-value=0.85 Score=31.95 Aligned_cols=14 Identities=36% Similarity=0.677 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+++.+
T Consensus 13 sGKST~A~~L~~~l 26 (166)
T PRK06762 13 SGKTTIAKQLQERL 26 (166)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999887
No 212
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=88.48 E-value=6.1 Score=33.10 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=65.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||.||+.++......|-.+..-+.++..- . ..... +...+.......++.|.+|.+++.
T Consensus 287 tGKT~lAkava~~~~~~fi~v~~~~l~sk~v-G--esek~----------------ir~~F~~A~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 287 TGKTLLAKAVALESRSRFISVKGSELLSKWV-G--ESEKN----------------IRELFEKARKLAPSIIFIDEIDSL 347 (494)
T ss_pred CCHHHHHHHHHhhCCCeEEEeeCHHHhcccc-c--hHHHH----------------HHHHHHHHHcCCCcEEEEEchhhh
Confidence 5999999999997766654433322111100 0 00111 222233333577899999999642
Q ss_pred h-------------hHHHhhccCCCCC--CCceEEEEecchhHHhhc-----CCCceEecCCCCHHHHHHHHHHhhc
Q 039644 81 S-------------QLESLMGSLDWLT--PVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 81 ~-------------~~~~l~~~~~~~~--~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
. ....+...+.... .+..||-+|......... .-...+.+..-+..+..++|..+..
T Consensus 348 ~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 348 ASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred hccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 1 1233333333222 333344455544433321 2245788888899999999998874
No 213
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=88.35 E-value=2.1 Score=29.43 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=46.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
.|||||++.++..... ..+.+++.......-. +. +. ......-.+.+.+-.++-++++|+..+.
T Consensus 37 sGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~-~~-----------lS---~G~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 37 AGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYF-EQ-----------LS---GGEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred CCHHHHHHHHcCCCCC-CceEEEECCeEEEEEE-cc-----------CC---HHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 5999999999885432 3555665421111000 00 00 0000122244455566779999999743
Q ss_pred hh---HHHhhccCCCCCCCceEEEEecchhHHhh
Q 039644 81 SQ---LESLMGSLDWLTPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 81 ~~---~~~l~~~~~~~~~~~~iivTtR~~~~~~~ 111 (192)
-+ ...+...+... +..|+++|........
T Consensus 101 LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 101 LDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 22 22332222221 2458888877665543
No 214
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=88.32 E-value=1.5 Score=31.12 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=32.4
Q ss_pred HHhhcCCceEEEEEeCCCCchh---HHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEec
Q 039644 61 NFRRLSRMKVLIVFDDVTCFSQ---LESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM 120 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l 120 (192)
+.+.+-.++-+++||...+.-+ .+.+...+.....+..||++|.+...... ..+.+.+
T Consensus 109 laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 5555567888999999975422 22222222111235668888887765542 3444444
No 215
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=88.31 E-value=1.1 Score=34.59 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=15.4
Q ss_pred CCceEEEEEeCCCCchh-HHHh
Q 039644 66 SRMKVLIVFDDVTCFSQ-LESL 86 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~~-~~~l 86 (192)
.+++.|+++||+....+ +.++
T Consensus 159 ~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 159 NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred CCCCEEEEEcChHHHHHHHHHH
Confidence 47899999999976533 4444
No 216
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=88.09 E-value=0.37 Score=31.87 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+++.+++
T Consensus 9 sGKtTia~~L~~~~ 22 (129)
T PF13238_consen 9 SGKTTIAKELAERL 22 (129)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999984
No 217
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.04 E-value=3.6 Score=35.67 Aligned_cols=48 Identities=4% Similarity=-0.069 Sum_probs=26.6
Q ss_pred ceEecCCCCHHHHHHHHHHhhcCCCC---CC--ccHHHHHHHHHHHhCCCchH
Q 039644 116 KIYEMEALEYHHALELFSQHAFKRNH---PD--VGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 116 ~~~~l~~l~~~ea~~lf~~~~~~~~~---~~--~~~~~~~~~i~~~~~g~Pla 163 (192)
..+..++++..+....+.+.+-.... .. ....+....|+..++|--..
T Consensus 267 ~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRs 319 (637)
T TIGR00602 267 SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRS 319 (637)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHH
Confidence 45889999999866666554422110 01 01234555666666666443
No 218
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=88.02 E-value=0.33 Score=34.91 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=27.7
Q ss_pred CceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 67 RMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
+++-|+++|......+ ...+...+.. ..++.+|++|....+....
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 3789999999964322 1222222221 1356799999988766654
No 219
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.97 E-value=2.7 Score=37.25 Aligned_cols=21 Identities=0% Similarity=0.080 Sum_probs=17.7
Q ss_pred CceEecCCCCHHHHHHHHHHh
Q 039644 115 SKIYEMEALEYHHALELFSQH 135 (192)
Q Consensus 115 ~~~~~l~~l~~~ea~~lf~~~ 135 (192)
-+.+.+++.+.++..+++...
T Consensus 341 Fq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 341 FQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred CcEEEeCCCCHHHHHHHHHHH
Confidence 357999999999999998854
No 220
>PRK07261 topology modulation protein; Provisional
Probab=87.90 E-value=1.5 Score=31.10 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||||+.+....
T Consensus 11 sGKSTla~~l~~~~ 24 (171)
T PRK07261 11 SGKSTLARKLSQHY 24 (171)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999998864
No 221
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=86.86 E-value=8.2 Score=29.38 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=14.1
Q ss_pred CchhHHHHHHHHHhhCCCcc
Q 039644 1 IGKTAIARAIFDKISGDFEC 20 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~ 20 (192)
+||++|++.+...+...+-.
T Consensus 96 tGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 96 TGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CChHHHHHHHHHHHHhcCCe
Confidence 47888888888776665544
No 222
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=86.83 E-value=2.4 Score=33.86 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=17.6
Q ss_pred CchhHHHHHHHHHhh--CC----CcceEEEee
Q 039644 1 IGKTAIARAIFDKIS--GD----FECSCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~--~~----F~~~~wv~~ 26 (192)
+|||+|+..++-... .. -..++|++.
T Consensus 134 ~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdt 165 (342)
T PLN03186 134 TGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDT 165 (342)
T ss_pred CCccHHHHHHHHHhhcchhhCCCCceEEEEEC
Confidence 699999998886422 11 125889884
No 223
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=86.69 E-value=1.6 Score=36.56 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=38.1
Q ss_pred CchhHHHH-HHHHHhhCCCcc-eEEEeeccccccCCCChHHHHHHHHHHHhc--------CCCC---cC-----chHHHH
Q 039644 1 IGKTAIAR-AIFDKISGDFEC-SCFLENVREESQRPGGLACLRQKLLSNILK--------DKNV---MP-----YIDLNF 62 (192)
Q Consensus 1 iGKTtLa~-~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~---~~-----~~~~l~ 62 (192)
+|||+||. .++++... +. .+++. +++.. ..+.++...+...-.- ..++ .. ..-.+.
T Consensus 173 ~GKT~Lal~~I~~q~~~--dv~~V~~~-IGeR~---rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiA 246 (497)
T TIGR03324 173 TGKTAIAIDTILNQKGR--NVLCIYCA-IGQRA---SAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIG 246 (497)
T ss_pred CCHHHHHHHHHHHhcCC--CcEEEEEE-eccCc---HHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 69999974 66665433 33 34544 33211 3455666555543110 0011 00 122234
Q ss_pred hhc--CCceEEEEEeCCCC
Q 039644 63 RRL--SRMKVLIVFDDVTC 79 (192)
Q Consensus 63 ~~l--~~~~~LlVlDdv~~ 79 (192)
+++ ++++.|+|+||+..
T Consensus 247 Eyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 247 EHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHhCCCCEEEEEcChhH
Confidence 444 57899999999954
No 224
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=86.64 E-value=5.3 Score=28.42 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=53.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHH------HHHHHHhcC-----CCC-cC----chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQ------KLLSNILKD-----KNV-MP----YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~------~l~~~~~~~-----~~~-~~----~~~~l~~~ 64 (192)
+|||||.+.++..... ..+.+++.. .+... .+...+.. ++++.+.-. ... .. ..-.+.+.
T Consensus 36 sGKStLl~~i~G~~~~-~~G~v~~~g-~~~~~--~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~lara 111 (180)
T cd03214 36 AGKSTLLKTLAGLLKP-SSGEILLDG-KDLAS--LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARA 111 (180)
T ss_pred CCHHHHHHHHhCCCCC-CCcEEEECC-EECCc--CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHH
Confidence 5999999999886533 456666642 11110 11111111 123332211 111 11 22335556
Q ss_pred cCCceEEEEEeCCCCchh---HHHhhccCCCC-CC-CceEEEEecchhHHhh
Q 039644 65 LSRMKVLIVFDDVTCFSQ---LESLMGSLDWL-TP-VSRIILTTRNKQVLRN 111 (192)
Q Consensus 65 l~~~~~LlVlDdv~~~~~---~~~l~~~~~~~-~~-~~~iivTtR~~~~~~~ 111 (192)
+-..+-++++|.....-+ .+.+...+... .. +..+|++|........
T Consensus 112 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 112 LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 667889999999974322 22222222211 12 5678888887665433
No 225
>PRK06217 hypothetical protein; Validated
Probab=86.56 E-value=4 Score=29.14 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+++...+.
T Consensus 12 sGKSTla~~L~~~l~ 26 (183)
T PRK06217 12 SGTTTLGAALAERLD 26 (183)
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999999753
No 226
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=86.53 E-value=0.18 Score=38.76 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+|+++...+.+
T Consensus 12 SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 12 SGKTTRAKELKKYLEE 27 (270)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh
Confidence 6999999999997665
No 227
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.41 E-value=4 Score=36.63 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=35.4
Q ss_pred CceEEEEEeCCCCch---------hH-HHhhccCCCCCCCceEEEEecchhHHhhc-------CCCceEecCCCCHHHHH
Q 039644 67 RMKVLIVFDDVTCFS---------QL-ESLMGSLDWLTPVSRIILTTRNKQVLRNW-------GVSKIYEMEALEYHHAL 129 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~---------~~-~~l~~~~~~~~~~~~iivTtR~~~~~~~~-------~~~~~~~l~~l~~~ea~ 129 (192)
.++.+|++|+++... +. +-+.+.+. .+.-++|-+|......... ...+.+.+...+.++..
T Consensus 270 ~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~ 347 (821)
T CHL00095 270 NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETI 347 (821)
T ss_pred cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHH
Confidence 467899999996221 11 22222221 1223455555443322111 23356788888888888
Q ss_pred HHHHH
Q 039644 130 ELFSQ 134 (192)
Q Consensus 130 ~lf~~ 134 (192)
.++..
T Consensus 348 aILr~ 352 (821)
T CHL00095 348 EILFG 352 (821)
T ss_pred HHHHH
Confidence 87764
No 228
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=86.30 E-value=0.33 Score=32.88 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=15.9
Q ss_pred CchhHHHHHHHHHhhCCCcc
Q 039644 1 IGKTAIARAIFDKISGDFEC 20 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~ 20 (192)
+|||++|+.++..+...|..
T Consensus 10 ~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 10 VGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp HHHHHHHHHHHHHTT--EEE
T ss_pred cHHHHHHHHHHHHcCCceeE
Confidence 59999999999998888865
No 229
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=86.28 E-value=1 Score=32.10 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=26.7
Q ss_pred chHHHHhhcCCceE-EEEEeCCCCch-----hHHHhhccCCCCCCCceEEEEecchh
Q 039644 57 YIDLNFRRLSRMKV-LIVFDDVTCFS-----QLESLMGSLDWLTPVSRIILTTRNKQ 107 (192)
Q Consensus 57 ~~~~l~~~l~~~~~-LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~iivTtR~~~ 107 (192)
..+..++.+.+..| |+|||.+..-- ..+.+...+........+|+|-|+..
T Consensus 84 ~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 84 GLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred HHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 44555666666655 99999984221 12333333333456788999999865
No 230
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=86.16 E-value=1.6 Score=36.15 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=38.1
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh-------cCCCC--cC----------chHHH
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL-------KDKNV--MP----------YIDLN 61 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~--~~----------~~~~l 61 (192)
+|||||+..++..... ..+++++..-+. ..+.++....+.... .+.++ .. ..+++
T Consensus 176 sGKTTLL~~Ia~l~~p-d~gvv~liGerg-----rev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyf 249 (450)
T PRK06002 176 VGKSTLLAMLARADAF-DTVVIALVGERG-----REVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYF 249 (450)
T ss_pred CCHHHHHHHHhCCCCC-CeeeeeecccCC-----ccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999888764432 234555532122 345544443333321 11111 11 33333
Q ss_pred HhhcCCceEEEEEeCCCCc
Q 039644 62 FRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 62 ~~~l~~~~~LlVlDdv~~~ 80 (192)
+. .+++.|+++||+...
T Consensus 250 rd--~G~~Vll~~DslTr~ 266 (450)
T PRK06002 250 RD--RGENVLLIVDSVTRF 266 (450)
T ss_pred HH--cCCCEEEeccchHHH
Confidence 32 478999999999543
No 231
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=86.14 E-value=2.7 Score=29.56 Aligned_cols=103 Identities=17% Similarity=0.077 Sum_probs=49.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEee---ccccccCCCChHHHHHHHHHHHhc-CCCCcC----chHHHHhhcCCceEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLEN---VREESQRPGGLACLRQKLLSNILK-DKNVMP----YIDLNFRRLSRMKVLI 72 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~----~~~~l~~~l~~~~~Ll 72 (192)
+|||||++.++..... ..+.+++.. ++...+.+. .. ...+.+.+.. ...... ..-.+.+.+-.++-++
T Consensus 38 sGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~-~~--~~tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 38 TGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPY-LP--LGTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred CCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCc-cc--cccHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 5999999999885432 234333321 111122211 10 0122222211 111111 3333555666788899
Q ss_pred EEeCCCCchh---HHHhhccCCCCCCCceEEEEecchhHH
Q 039644 73 VFDDVTCFSQ---LESLMGSLDWLTPVSRIILTTRNKQVL 109 (192)
Q Consensus 73 VlDdv~~~~~---~~~l~~~~~~~~~~~~iivTtR~~~~~ 109 (192)
+||...+.-+ ...+...+... +..+|++|.+....
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 9999864322 22222222222 35588888776544
No 232
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=85.84 E-value=3.2 Score=34.73 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=42.7
Q ss_pred CchhHHHHHHHHHhhCCC-cceEEEeeccccccCCCChHHHHHHHHHHHhcCC--------------CC-c---C-----
Q 039644 1 IGKTAIARAIFDKISGDF-ECSCFLENVREESQRPGGLACLRQKLLSNILKDK--------------NV-M---P----- 56 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~-~---~----- 56 (192)
+|||+|+.+++..+.... +.+++.- +++-. ....+++..++..-.... .+ . .
T Consensus 172 vGKs~L~~~~~~~~~~~~~dv~V~~l-IGERg---rEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~ 247 (494)
T CHL00060 172 VGKTVLIMELINNIAKAHGGVSVFGG-VGERT---REGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGL 247 (494)
T ss_pred CChhHHHHHHHHHHHHhcCCeEEEEE-eccCc---hHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHH
Confidence 699999999988743222 4555554 44321 346667766655211110 00 0 0
Q ss_pred chHHHHhhcC--C-ceEEEEEeCCCCc
Q 039644 57 YIDLNFRRLS--R-MKVLIVFDDVTCF 80 (192)
Q Consensus 57 ~~~~l~~~l~--~-~~~LlVlDdv~~~ 80 (192)
..-.+.++++ + ++.||++||+...
T Consensus 248 ~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 248 TALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 2333556663 3 4999999999543
No 233
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=85.67 E-value=9.7 Score=28.93 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEe
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~ 25 (192)
+|||+++.+++...... -..++|++
T Consensus 41 ~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 41 VGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 69999999998875333 45677886
No 234
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=85.65 E-value=0.84 Score=34.95 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=43.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+||||++..+...+...-..++-+.+..+.. +.. ..++.-.... ......++..++..+=.|+++.+.+
T Consensus 91 SGKTT~l~all~~i~~~~~~iitiEdp~E~~-----~~~-----~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 91 SGKTTTLYSALSELNTPEKNIITVEDPVEYQ-----IPG-----INQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CcHHHHHHHHHhhhCCCCCeEEEECCCceec-----CCC-----ceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 5999999999887644222334443222211 000 0111111111 2255667777888888999999998
Q ss_pred chhHHHhh
Q 039644 80 FSQLESLM 87 (192)
Q Consensus 80 ~~~~~~l~ 87 (192)
.+....+.
T Consensus 161 ~e~a~~~~ 168 (264)
T cd01129 161 AETAEIAV 168 (264)
T ss_pred HHHHHHHH
Confidence 87655443
No 235
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.40 E-value=4.5 Score=34.95 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHhhCCCc
Q 039644 1 IGKTAIARAIFDKISGDFE 19 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~ 19 (192)
+|||++|+.+++.....|-
T Consensus 479 C~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 479 CGKTLLAKALANEAGMNFL 497 (693)
T ss_pred cchHHHHHHHhhhhcCCee
Confidence 6999999999998877764
No 236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=85.34 E-value=3 Score=32.64 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=18.7
Q ss_pred CchhHHHHHHHHHhhCC------CcceEEEee
Q 039644 1 IGKTAIARAIFDKISGD------FECSCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~------F~~~~wv~~ 26 (192)
+|||+|+.+++...... =..++|++.
T Consensus 106 ~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~t 137 (310)
T TIGR02236 106 SGKTQICHQLAVNVQLPEEKGGLGGKAVYIDT 137 (310)
T ss_pred CCHHHHHHHHHHHhcCCcccCCCcceEEEEEC
Confidence 69999999998864321 126888873
No 237
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=85.22 E-value=1.2 Score=30.64 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=17.9
Q ss_pred CchhHHHHHHHHHhh-CCCcceEEEe
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~wv~ 25 (192)
+|||||++.+++.+. ..+...+...
T Consensus 11 sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 11 SGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp SSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 699999999999865 5555555554
No 238
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=85.15 E-value=1.5 Score=30.79 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=51.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhc--CCCC-cCchHHHHhhcCCceEEEEEeCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILK--DKNV-MPYIDLNFRRLSRMKVLIVFDDV 77 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~-~~~~~~l~~~l~~~~~LlVlDdv 77 (192)
+|||||.+.++.... ...+.+++... +... ....+... ..+.- +-+. ....-.+.+.+-..+-++++|+.
T Consensus 37 sGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~~--~~~~~~~~---~~i~~~~qLS~G~~qrl~laral~~~p~illlDEP 109 (163)
T cd03216 37 AGKSTLMKILSGLYK-PDSGEILVDGK-EVSF--ASPRDARR---AGIAMVYQLSVGERQMVEIARALARNARLLILDEP 109 (163)
T ss_pred CCHHHHHHHHhCCCC-CCCeEEEECCE-ECCc--CCHHHHHh---cCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 599999999988543 24566666521 1110 11111110 01100 0010 11223355556677889999999
Q ss_pred CCchh---HHHhhccCCCC-CCCceEEEEecchhHHh
Q 039644 78 TCFSQ---LESLMGSLDWL-TPVSRIILTTRNKQVLR 110 (192)
Q Consensus 78 ~~~~~---~~~l~~~~~~~-~~~~~iivTtR~~~~~~ 110 (192)
.+.-+ .+.+...+... ..+..||++|.+.....
T Consensus 110 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 110 TAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 75322 22222222211 23556888888766443
No 239
>PTZ00035 Rad51 protein; Provisional
Probab=85.05 E-value=4 Score=32.47 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=17.0
Q ss_pred CchhHHHHHHHHHhhC------CCcceEEEee
Q 039644 1 IGKTAIARAIFDKISG------DFECSCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~------~F~~~~wv~~ 26 (192)
+|||+|+..++-...- .=..++|++.
T Consensus 129 sGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdt 160 (337)
T PTZ00035 129 TGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDT 160 (337)
T ss_pred CchhHHHHHHHHHhccccccCCCCceEEEEEc
Confidence 6999999998864331 1124568873
No 240
>PRK05922 type III secretion system ATPase; Validated
Probab=84.99 E-value=2.2 Score=35.10 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||.+.++....
T Consensus 168 ~GKSTLL~~Ia~~~~ 182 (434)
T PRK05922 168 SGKSSLLSTIAKGSK 182 (434)
T ss_pred CChHHHHHHHhccCC
Confidence 699999999987653
No 241
>PRK08149 ATP synthase SpaL; Validated
Probab=84.96 E-value=1.8 Score=35.53 Aligned_cols=74 Identities=11% Similarity=0.163 Sum_probs=38.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhc--------CCCC---cC-----chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILK--------DKNV---MP-----YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~---~~-----~~~~l~~~ 64 (192)
+|||||...++..... +.++... +. .....+.++....+..... ..+. .. ..-.+.++
T Consensus 162 ~GKTTLl~~i~~~~~~--dv~v~g~-Ig---~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~ 235 (428)
T PRK08149 162 CGKTSLMNMLIEHSEA--DVFVIGL-IG---ERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEY 235 (428)
T ss_pred CChhHHHHHHhcCCCC--CeEEEEE-Ee---eCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHH
Confidence 6999999988874332 1222211 11 1114566666666553211 1111 00 12223333
Q ss_pred c--CCceEEEEEeCCCCc
Q 039644 65 L--SRMKVLIVFDDVTCF 80 (192)
Q Consensus 65 l--~~~~~LlVlDdv~~~ 80 (192)
+ .+++.|+++||+...
T Consensus 236 fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 236 FRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHcCCCEEEEccchHHH
Confidence 3 478999999999543
No 242
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.96 E-value=17 Score=28.45 Aligned_cols=118 Identities=11% Similarity=0.085 Sum_probs=70.4
Q ss_pred ceE-EEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhH--HhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 68 MKV-LIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQV--LRNWGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 68 ~~~-LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~--~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
++| ++|+-.+++.. .-..++.....+.+.+|+|+.....+. ...-+..-.+++...+.+|....+.+..-.....
T Consensus 126 r~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~ 205 (351)
T KOG2035|consen 126 RPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ 205 (351)
T ss_pred cceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc
Confidence 455 55666665432 233444444445677888886544321 1111233467888999999999988876433322
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHHHHHhcc-------C--C--HHHHHHHHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKVLSCFLHK-------R--E--KEVWESAIDKLQ 187 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~-------~--~--~~~w~~~l~~l~ 187 (192)
- ..+.+.+|+++++|.-.-...+....+- + . ..+|+-++.++-
T Consensus 206 l--p~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 206 L--PKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred C--cHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHH
Confidence 2 3678899999999875544444333321 1 1 578998887654
No 243
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=84.94 E-value=3.5 Score=34.04 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=38.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhc--------CCCC--cC------chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILK--------DKNV--MP------YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~--~~------~~~~l~~~ 64 (192)
+|||||++.++..... +.++.. .+++-. ..+.++...++..-.- ..++ .. ..-.+.++
T Consensus 173 ~GKSTLL~~I~~~~~~--dv~Vi~-lIGER~---rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEy 246 (444)
T PRK08972 173 VGKSVLLGMMTRGTTA--DVIVVG-LVGERG---REVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEY 246 (444)
T ss_pred CChhHHHHHhccCCCC--CEEEEE-EEcCCh---HHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5999999999875433 334443 233311 3455555554333110 0011 00 12223333
Q ss_pred c--CCceEEEEEeCCCCc
Q 039644 65 L--SRMKVLIVFDDVTCF 80 (192)
Q Consensus 65 l--~~~~~LlVlDdv~~~ 80 (192)
+ .+++.|+++||+...
T Consensus 247 frd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 247 FRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHcCCCEEEEEcChHHH
Confidence 3 578999999999543
No 244
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=84.94 E-value=1.7 Score=35.56 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=12.4
Q ss_pred CCceEEEEEeCCCCc
Q 039644 66 SRMKVLIVFDDVTCF 80 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~ 80 (192)
.+++.|+++||+...
T Consensus 225 ~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 225 QGKDVLLLMDSLTRF 239 (411)
T ss_pred CCCCEEEEEeChHHH
Confidence 478999999999543
No 245
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=84.82 E-value=7.1 Score=26.92 Aligned_cols=15 Identities=47% Similarity=0.632 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||||+.+...+.
T Consensus 10 sGKSTla~~L~~~l~ 24 (149)
T cd02027 10 SGKSTIARALEEKLF 24 (149)
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999999764
No 246
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=84.79 E-value=1.3 Score=35.94 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=31.2
Q ss_pred CchHHHHhhcCCceEEEEEeCCCCchh-----HHHhhccCCCCCCCceEEEEecchh
Q 039644 56 PYIDLNFRRLSRMKVLIVFDDVTCFSQ-----LESLMGSLDWLTPVSRIILTTRNKQ 107 (192)
Q Consensus 56 ~~~~~l~~~l~~~~~LlVlDdv~~~~~-----~~~l~~~~~~~~~~~~iivTtR~~~ 107 (192)
+.+..+.......-+||+||.+.-.+. +..+...+. .+|. |+|.|.++.
T Consensus 181 Dpl~~vA~eIa~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf--~~Gv-VlvATSNR~ 234 (467)
T KOG2383|consen 181 DPLPVVADEIAEEAILLCFDEFQVTDVADAMILKRLFEHLF--KNGV-VLVATSNRA 234 (467)
T ss_pred CccHHHHHHHhhhceeeeechhhhhhHHHHHHHHHHHHHHH--hCCe-EEEEeCCCC
Confidence 366677777778899999999974432 455555543 3355 555555543
No 247
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=84.53 E-value=12 Score=27.49 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=34.8
Q ss_pred HHHHhhcCCceEEEEEeCCC----CchhHHHhhccCCC-CCCCceEEEEecchhHHhhc
Q 039644 59 DLNFRRLSRMKVLIVFDDVT----CFSQLESLMGSLDW-LTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 59 ~~l~~~l~~~~~LlVlDdv~----~~~~~~~l~~~~~~-~~~~~~iivTtR~~~~~~~~ 112 (192)
-.+.+.+-+++-+|+-|.-. ....|+-+. .+.. +..|+.|++.|.+..+...+
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhc
Confidence 34666667889999998653 333343221 1111 34788999999999888776
No 248
>PRK11823 DNA repair protein RadA; Provisional
Probab=84.40 E-value=3.7 Score=34.05 Aligned_cols=70 Identities=9% Similarity=0.193 Sum_probs=38.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCc-----CchHHHHhhcC-CceEEEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVM-----PYIDLNFRRLS-RMKVLIVF 74 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~l~~~l~-~~~~LlVl 74 (192)
+|||||+.+++.....+-..++|++. . .....+... .+.+..+.+.. .....+...+. .++-++|+
T Consensus 91 ~GKTtL~lq~a~~~a~~g~~vlYvs~-E------es~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVI 162 (446)
T PRK11823 91 IGKSTLLLQVAARLAAAGGKVLYVSG-E------ESASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVI 162 (446)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEc-c------ccHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEE
Confidence 69999999999976543345678762 1 123333222 22332211110 13344444443 35668999
Q ss_pred eCCC
Q 039644 75 DDVT 78 (192)
Q Consensus 75 Ddv~ 78 (192)
|.+.
T Consensus 163 DSIq 166 (446)
T PRK11823 163 DSIQ 166 (446)
T ss_pred echh
Confidence 9985
No 249
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=84.35 E-value=0.8 Score=33.15 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.4
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+|+.+...+...
T Consensus 10 SGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 10 SGKTTLAKRLAQILNKR 26 (194)
T ss_dssp SSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhCcc
Confidence 69999999999987643
No 250
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.18 E-value=4.9 Score=31.95 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=18.1
Q ss_pred CchhHHHHHHHHH----hhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDK----ISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~----~~~~F~~~~wv~ 25 (192)
.|||+|.+.++++ ...+|....-+.
T Consensus 188 TGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 188 TGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred CChhHHHHHHHHhheeeecCccccceEEE
Confidence 4999999999995 345565555554
No 251
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=83.95 E-value=2.4 Score=33.60 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=37.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh-------cCCCC---cC------chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL-------KDKNV---MP------YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~---~~------~~~~l~~~ 64 (192)
+|||||.+.++...... ..+... ++. ....+.++....+..-. ....+ .. ..-.+.++
T Consensus 80 ~GKTtLl~~Ia~~~~~~--~~vi~~-iGe---r~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEy 153 (326)
T cd01136 80 VGKSTLLGMIARGTTAD--VNVIAL-IGE---RGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEY 153 (326)
T ss_pred CChHHHHHHHhCCCCCC--EEEEEE-Eec---CCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999988865432 222222 211 11455565555544311 01111 11 12223333
Q ss_pred c--CCceEEEEEeCCCCc
Q 039644 65 L--SRMKVLIVFDDVTCF 80 (192)
Q Consensus 65 l--~~~~~LlVlDdv~~~ 80 (192)
+ .+++.|+++||+...
T Consensus 154 fr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 154 FRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHcCCCeEEEeccchHH
Confidence 3 478999999998543
No 252
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=83.93 E-value=2.9 Score=32.07 Aligned_cols=109 Identities=16% Similarity=0.102 Sum_probs=59.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccC-CCChHHHHHHHHHHHhcCCCC-------cC----chHHHHhhcCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQR-PGGLACLRQKLLSNILKDKNV-------MP----YIDLNFRRLSRM 68 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-------~~----~~~~l~~~l~~~ 68 (192)
+||||+++.+..-.+.- .+.+++.+ .+...- .....+...+++..++...+. .+ -.-.+.+.+.-+
T Consensus 50 ~GKSTlgr~i~~L~~pt-~G~i~f~g-~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 50 CGKSTLGRLILGLEEPT-SGEILFEG-KDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred CCHHHHHHHHHcCcCCC-CceEEEcC-cchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 69999999999855433 34555542 111000 023445556666666533211 11 222356667788
Q ss_pred eEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 69 KVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 69 ~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
+-++|.|...+.-+ .-.+...+.. ..|-..+..|.+-.+...+
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 99999999875432 1122222221 2344577777777766665
No 253
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=83.69 E-value=5 Score=33.25 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHhh-CCCcceEEEeeccccccCCCChHHHHHHHHHHHhc--------CCCC--cC------chHHHHh
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCFLENVREESQRPGGLACLRQKLLSNILK--------DKNV--MP------YIDLNFR 63 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~--~~------~~~~l~~ 63 (192)
+|||+|+.+++.... .+-+.+++.- +++- .....++...+...-.- ..++ .. ..-.+.+
T Consensus 149 ~GKt~l~~~~~~~~~~~~~~v~V~~~-iGeR---~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAE 224 (449)
T TIGR03305 149 VGKTVLLTEMIHNMVGQHQGVSIFCG-IGER---CREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAE 224 (449)
T ss_pred CChhHHHHHHHHHHHhcCCCEEEEEE-eccC---cHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 699999999988654 3235566654 4331 13455666665443110 0011 00 2333445
Q ss_pred hc---CCceEEEEEeCCCCc
Q 039644 64 RL---SRMKVLIVFDDVTCF 80 (192)
Q Consensus 64 ~l---~~~~~LlVlDdv~~~ 80 (192)
++ .+++.|+++||+...
T Consensus 225 yfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 225 YFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHhcCCceEEEecChHHH
Confidence 54 358999999999643
No 254
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=83.63 E-value=1.6 Score=32.28 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=28.5
Q ss_pred CCceEEEEEeCCCCchh-------HHHhhccCCCC-CCCceEEEEecchhHHhhc
Q 039644 66 SRMKVLIVFDDVTCFSQ-------LESLMGSLDWL-TPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~-~~~~~iivTtR~~~~~~~~ 112 (192)
...+.|++||......+ ...+...+... ..+..+|++|.........
T Consensus 106 ~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 36789999999975432 11222233222 2234799999987776654
No 255
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=83.49 E-value=5.8 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEe
Q 039644 70 VLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTT 103 (192)
Q Consensus 70 ~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTt 103 (192)
-++|+|.+.-. ..+..+....+. .++++|+.-
T Consensus 95 ~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 95 DVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp SEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred cEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 49999999744 457777666554 466777654
No 256
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=83.46 E-value=4.1 Score=32.14 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=17.2
Q ss_pred CchhHHHHHHHHHhh--CCC----cceEEEee
Q 039644 1 IGKTAIARAIFDKIS--GDF----ECSCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~--~~F----~~~~wv~~ 26 (192)
+|||+|+..++..+. ... ..++|++.
T Consensus 107 ~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdt 138 (316)
T TIGR02239 107 TGKTQLCHTLAVTCQLPIDQGGGEGKALYIDT 138 (316)
T ss_pred CCcCHHHHHHHHHHhhhhhcCCCCceEEEEEC
Confidence 699999999986321 111 24588873
No 257
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=83.41 E-value=4.6 Score=32.38 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=23.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHH
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLL 45 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~ 45 (192)
+|||+|+.++++.... +.++++- +++- ...+.+++.++-
T Consensus 168 ~GKT~L~~~Iak~~~~--dvvVyv~-iGER---g~Ev~e~l~ef~ 206 (369)
T cd01134 168 CGKTVIQQSLSKYSNS--DIVIYVG-CGER---GNEMTEVLEEFP 206 (369)
T ss_pred CChHHHHHHHHhCCCC--CEEEEEE-eCCC---hHHHHHHHHHHH
Confidence 6999999999986433 3556554 3221 134555555543
No 258
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=83.38 E-value=9.8 Score=27.71 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=16.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||.+-+++.+.+.+-..+..++
T Consensus 12 vGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 12 VGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CchHhHHHHHHHHHhhccccceeec
Confidence 6999999999987654433444444
No 259
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=83.29 E-value=13 Score=25.93 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=49.7
Q ss_pred ceEEEEEeCC------CCchhHHHhhccCCCCCCCceEEEEec-chh----HHhhc-CCCceEecCCCCHHHHHHHHHHh
Q 039644 68 MKVLIVFDDV------TCFSQLESLMGSLDWLTPVSRIILTTR-NKQ----VLRNW-GVSKIYEMEALEYHHALELFSQH 135 (192)
Q Consensus 68 ~~~LlVlDdv------~~~~~~~~l~~~~~~~~~~~~iivTtR-~~~----~~~~~-~~~~~~~l~~l~~~ea~~lf~~~ 135 (192)
.+-++|+.+. .....++.+...+.+..+++.+|+.+. ... ..... .....+...++...+....+...
T Consensus 57 ~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~ 136 (172)
T PF06144_consen 57 DKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKER 136 (172)
T ss_dssp SEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHH
T ss_pred CCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHH
Confidence 4567777776 234568888888877677888888877 222 11112 23445667777777776666655
Q ss_pred hcCCCCCCccHHHHHHHHHHHhCCCchHHH
Q 039644 136 AFKRNHPDVGYEKLSSNVTKYAQGIPLALK 165 (192)
Q Consensus 136 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 165 (192)
+-... -.-..+....+++.+++.+.++.
T Consensus 137 ~~~~g--~~i~~~a~~~L~~~~~~d~~~l~ 164 (172)
T PF06144_consen 137 AKKNG--LKIDPDAAQYLIERVGNDLSLLQ 164 (172)
T ss_dssp HHHTT---EE-HHHHHHHHHHHTT-HHHHH
T ss_pred HHHcC--CCCCHHHHHHHHHHhChHHHHHH
Confidence 53222 12344556667777777665543
No 260
>PTZ00301 uridine kinase; Provisional
Probab=83.28 E-value=0.82 Score=33.75 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+||||||..+.+++...+
T Consensus 14 SGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 14 SGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CCHHHHHHHHHHHHHhhc
Confidence 699999999988764433
No 261
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=83.14 E-value=3.8 Score=34.03 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=19.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||||+.+++.....+-..++|++
T Consensus 105 sGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 105 IGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 6999999999887654434577886
No 262
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=83.09 E-value=0.98 Score=26.76 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+++.+.+.+
T Consensus 10 sGKst~~~~l~~~l 23 (69)
T cd02019 10 SGKSTVAKKLAEQL 23 (69)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999985
No 263
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=82.97 E-value=1.7 Score=35.08 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.3
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+|||.+|+.++.+....|
T Consensus 159 cGKTllAraiA~elg~~~ 176 (413)
T PLN00020 159 QGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCHHHHHHHHHHHcCCCe
Confidence 699999999999876553
No 264
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=82.88 E-value=2.8 Score=30.90 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=20.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||.++.++..++++.-.++|..
T Consensus 14 aGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 14 AGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6999999999999887766666665
No 265
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=82.87 E-value=3 Score=31.66 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+++.++..+...+...++|++
T Consensus 34 sGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 34 TGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 6999999999998777788899997
No 266
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=82.78 E-value=28 Score=30.98 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=76.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhc-CCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRL-SRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 79 (192)
+|||-||+.++.+-.- -|+++... +.++.+.+... ..++.+.... ...++.+-+|.++.
T Consensus 355 TGKTLLAKAiAGEAgV-----PF~svSGS-------------EFvE~~~g~~a--srvr~lf~~ar~~aP~iifideida 414 (774)
T KOG0731|consen 355 TGKTLLAKAIAGEAGV-----PFFSVSGS-------------EFVEMFVGVGA--SRVRDLFPLARKNAPSIIFIDEIDA 414 (774)
T ss_pred CcHHHHHHHHhcccCC-----ceeeechH-------------HHHHHhcccch--HHHHHHHHHhhccCCeEEEeccccc
Confidence 5999999999987532 34442111 22222222111 0222233333 45689999998863
Q ss_pred ch-----------------hHHHhhccCCCCCCCceEEE--EecchhHHhhc-----CCCceEecCCCCHHHHHHHHHHh
Q 039644 80 FS-----------------QLESLMGSLDWLTPVSRIIL--TTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSQH 135 (192)
Q Consensus 80 ~~-----------------~~~~l~~~~~~~~~~~~iiv--TtR~~~~~~~~-----~~~~~~~l~~l~~~ea~~lf~~~ 135 (192)
.. -+.++......+...+.||+ +|+..++.... .-...+.++.-+...-.++|..+
T Consensus 415 ~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731|consen 415 VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred ccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHH
Confidence 21 14455544444444443443 45444433322 22455777777888888999888
Q ss_pred hcCCCCCCccHHHHHHHHHHHhCCCchH
Q 039644 136 AFKRNHPDVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 136 ~~~~~~~~~~~~~~~~~i~~~~~g~Pla 163 (192)
+...+.. .+..++.+ +....-|++=|
T Consensus 495 ~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 495 LRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred hhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 7544432 34455555 77777777755
No 267
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=82.61 E-value=1.2 Score=33.04 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=16.1
Q ss_pred CchhHHHHHHHHHhhCCCcc
Q 039644 1 IGKTAIARAIFDKISGDFEC 20 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~ 20 (192)
+||||+|+.++..+......
T Consensus 19 SGKTTva~~l~~~~~~~~~~ 38 (218)
T COG0572 19 SGKTTVAKELSEQLGVEKVV 38 (218)
T ss_pred CCHHHHHHHHHHHhCcCcce
Confidence 69999999999988755333
No 268
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=82.55 E-value=21 Score=27.84 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=36.5
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhHH-hhc-CCCceEecCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVL-RNW-GVSKIYEMEAL 123 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~-~~~-~~~~~~~l~~l 123 (192)
+..=++|+|+++... ....+...+-+-..++.+|++|.+.... ... +....+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 445588999999764 4777777666666677777777764432 222 34455666644
No 269
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=82.51 E-value=0.8 Score=29.74 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=14.8
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+|||+||..++..+.+++
T Consensus 9 ~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 9 IGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 699999999999765544
No 270
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=82.49 E-value=2.4 Score=35.59 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=11.9
Q ss_pred CceEEEEEeCCCCc
Q 039644 67 RMKVLIVFDDVTCF 80 (192)
Q Consensus 67 ~~~~LlVlDdv~~~ 80 (192)
+++.|+|+||+...
T Consensus 253 G~~VLli~DdlTr~ 266 (502)
T PRK09281 253 GKDALIVYDDLSKQ 266 (502)
T ss_pred CCCEEEEecCchHH
Confidence 78999999999543
No 271
>PRK07413 hypothetical protein; Validated
Probab=82.38 E-value=10 Score=30.69 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=31.9
Q ss_pred hHHHHhhcCCceE-EEEEeCCCCch-----hHHHhhccCCCCCCCceEEEEecchhH
Q 039644 58 IDLNFRRLSRMKV-LIVFDDVTCFS-----QLESLMGSLDWLTPVSRIILTTRNKQV 108 (192)
Q Consensus 58 ~~~l~~~l~~~~~-LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~iivTtR~~~~ 108 (192)
.+..+..+.+..| |+|||.+..-- ..+.+...+.....+..||+|-|+...
T Consensus 114 ~~~a~~~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~ 170 (382)
T PRK07413 114 WDIAKGAIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQ 170 (382)
T ss_pred HHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCH
Confidence 3445555666666 99999996322 233444434444567799999998553
No 272
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=82.25 E-value=1.9 Score=35.34 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=38.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh--------cCCCC---cC-----chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL--------KDKNV---MP-----YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~---~~-----~~~~l~~~ 64 (192)
+|||||+..++...+.. .+++.....+. ..+.++....+..-. ...++ .. ..-.+.++
T Consensus 151 ~GKTtLl~~I~~~~~~~-~gvi~~iGer~-----~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEy 224 (418)
T TIGR03498 151 VGKSTLLSMLARNTDAD-VVVIALVGERG-----REVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEY 224 (418)
T ss_pred CChHHHHHHHhCCCCCC-EEEEEEEeeec-----hHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999998888765432 23333332222 345555544333211 00111 00 12223344
Q ss_pred c--CCceEEEEEeCCCCc
Q 039644 65 L--SRMKVLIVFDDVTCF 80 (192)
Q Consensus 65 l--~~~~~LlVlDdv~~~ 80 (192)
+ .+++.|+++||+...
T Consensus 225 frd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 225 FRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHcCCCEEEeccchhHH
Confidence 4 478999999999644
No 273
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=82.17 E-value=2.9 Score=34.89 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.3
Q ss_pred CCceEEEEEeCCCCc
Q 039644 66 SRMKVLIVFDDVTCF 80 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~ 80 (192)
++++.|+|+||+...
T Consensus 231 ~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 231 RGRHTLIIYDDLSKQ 245 (485)
T ss_pred cCCCEEEEEcChhHH
Confidence 478999999999543
No 274
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=82.10 E-value=1.4 Score=32.76 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=28.0
Q ss_pred CceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 67 RMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
+.+-|++||.+..... ...+...+... .++.+|++|....+....
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 4689999999843221 12233333322 467899999988876544
No 275
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=81.87 E-value=1.7 Score=31.11 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||||..+...+..
T Consensus 10 sGKttla~~l~~~l~~ 25 (179)
T cd02028 10 SGKTTFAKKLSNQLRV 25 (179)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999997653
No 276
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=81.82 E-value=1.2 Score=32.69 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=27.2
Q ss_pred ceEEEEEeCCCCch---hHHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 68 MKVLIVFDDVTCFS---QLESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 68 ~~~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
..-++||||++..- ....+...+......+.+||||..+.+....
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34589999998542 2444444444445568899999988877665
No 277
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=81.53 E-value=1 Score=31.45 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=14.7
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+++.++..+.-.
T Consensus 3 sGKStvg~~lA~~L~~~ 19 (158)
T PF01202_consen 3 SGKSTVGKLLAKRLGRP 19 (158)
T ss_dssp SSHHHHHHHHHHHHTSE
T ss_pred CcHHHHHHHHHHHhCCC
Confidence 69999999999988644
No 278
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=81.49 E-value=6.5 Score=32.53 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=38.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh--------cCCCC--cC------chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL--------KDKNV--MP------YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~--~~------~~~~l~~~ 64 (192)
+|||||+.+++..... +.+++.. +++-. ..+.++....+..-. ...++ .. ..-.+.++
T Consensus 169 ~GKTtLL~~I~~~~~~--d~~v~~~-iGER~---rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEy 242 (442)
T PRK08927 169 VGKSVLLSMLARNADA--DVSVIGL-IGERG---REVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEY 242 (442)
T ss_pred CCHHHHHHHHHhccCC--CEEEEEE-EecCc---HHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999876543 2333332 33211 345555544433211 01111 00 12223333
Q ss_pred c--CCceEEEEEeCCCCc
Q 039644 65 L--SRMKVLIVFDDVTCF 80 (192)
Q Consensus 65 l--~~~~~LlVlDdv~~~ 80 (192)
+ .+++.|+++||+...
T Consensus 243 frd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 243 FRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHCCCcEEEEEeCcHHH
Confidence 3 478999999999543
No 279
>PRK09099 type III secretion system ATPase; Provisional
Probab=81.38 E-value=2.4 Score=35.01 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=38.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh--------cCCCC--cC------chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL--------KDKNV--MP------YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~--~~------~~~~l~~~ 64 (192)
+|||||++.++...... .+++....-+. ..+.++...+...-. ...++ .. ..-.+.++
T Consensus 174 ~GKTtLl~~ia~~~~~d-~~vi~~iGer~-----~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEy 247 (441)
T PRK09099 174 VGKSTLMGMFARGTQCD-VNVIALIGERG-----REVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEY 247 (441)
T ss_pred CCHHHHHHHHhCCCCCC-eEEEEEEccCh-----HHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999998754432 23444332222 345555444433211 00010 00 11223333
Q ss_pred c--CCceEEEEEeCCCCc
Q 039644 65 L--SRMKVLIVFDDVTCF 80 (192)
Q Consensus 65 l--~~~~~LlVlDdv~~~ 80 (192)
+ .+++.|+++||+...
T Consensus 248 frd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 248 FRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHcCCCEEEeccchhHH
Confidence 3 478999999999644
No 280
>COG1485 Predicted ATPase [General function prediction only]
Probab=81.27 E-value=4.9 Score=32.09 Aligned_cols=89 Identities=13% Similarity=0.188 Sum_probs=50.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCC--
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVT-- 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-- 78 (192)
.|||.|.-.+|+.+...=... ....+++..+-+.+.....+.+.+..+...+..+-.+|+||.+.
T Consensus 76 rGKT~LMD~Fy~~lp~~~k~R-------------~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~Vt 142 (367)
T COG1485 76 RGKTMLMDLFYESLPGERKRR-------------LHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVT 142 (367)
T ss_pred ccHHHHHHHHHhhCCcccccc-------------ccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeec
Confidence 499999999999653211000 23345555555554433322346666677777777799999985
Q ss_pred Cchh---HHHhhccCCCCCCCceEEEEecc
Q 039644 79 CFSQ---LESLMGSLDWLTPVSRIILTTRN 105 (192)
Q Consensus 79 ~~~~---~~~l~~~~~~~~~~~~iivTtR~ 105 (192)
+..+ +..+...+- ..|. +||+|.|
T Consensus 143 DI~DAMiL~rL~~~Lf--~~GV-~lvaTSN 169 (367)
T COG1485 143 DIADAMILGRLLEALF--ARGV-VLVATSN 169 (367)
T ss_pred ChHHHHHHHHHHHHHH--HCCc-EEEEeCC
Confidence 3222 445444442 3455 4444444
No 281
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=81.14 E-value=1.1 Score=32.10 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+.....
T Consensus 12 SGKSsia~~Lq~~~~ 26 (174)
T PF07931_consen 12 SGKSSIARALQERLP 26 (174)
T ss_dssp SSHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHhCc
Confidence 699999999998754
No 282
>PRK08233 hypothetical protein; Provisional
Probab=80.95 E-value=1.1 Score=31.79 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||||..++..+.
T Consensus 14 sGKtTla~~L~~~l~ 28 (182)
T PRK08233 14 GGKTTLTERLTHKLK 28 (182)
T ss_pred CCHHHHHHHHHhhCC
Confidence 699999999998764
No 283
>PTZ00185 ATPase alpha subunit; Provisional
Probab=80.85 E-value=11 Score=32.11 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=12.4
Q ss_pred CCceEEEEEeCCCCc
Q 039644 66 SRMKVLIVFDDVTCF 80 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~ 80 (192)
++++.|+|+||+...
T Consensus 287 ~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 287 RGRHCLCVYDDLSKQ 301 (574)
T ss_pred cCCCEEEEEcCchHH
Confidence 478999999999643
No 284
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=80.84 E-value=2.1 Score=29.30 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=19.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+++..++......-..++|++
T Consensus 10 ~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 10 SGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 5999999999997655445566775
No 285
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=80.66 E-value=25 Score=29.09 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=13.6
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||++..++..++.+
T Consensus 111 vGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 111 SGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 69999999998865443
No 286
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=80.62 E-value=1.2 Score=30.21 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=13.2
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||+||+.+++.+
T Consensus 10 ~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 10 TGKTTLARELAALL 23 (139)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999988
No 287
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=80.61 E-value=1.3 Score=31.37 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+.....
T Consensus 13 sGKst~a~~l~~~~~ 27 (175)
T cd00227 13 AGKSSIARALQSVLA 27 (175)
T ss_pred CCHHHHHHHHHHhhC
Confidence 699999999998754
No 288
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=80.55 E-value=1.2 Score=29.91 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
.||||+++.++..+
T Consensus 26 aGKTtf~r~l~~~l 39 (123)
T PF02367_consen 26 AGKTTFVRGLARAL 39 (123)
T ss_dssp SSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHc
Confidence 59999999999953
No 289
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=80.45 E-value=1.2 Score=31.47 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=18.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFL 24 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv 24 (192)
+|||||..++..+++++--.+.-+
T Consensus 13 SGKTTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 13 SGKTTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred CChhhHHHHHHHHHHhCCcEEEEE
Confidence 699999999999987765444444
No 290
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=80.31 E-value=3.4 Score=29.47 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=16.4
Q ss_pred CchhHHHHHHHHHhhCCCcc
Q 039644 1 IGKTAIARAIFDKISGDFEC 20 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~ 20 (192)
+||||+++.+++.+......
T Consensus 7 sGKtT~~~~L~~~l~~~~~~ 26 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYK 26 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEE
T ss_pred CCHHHHHHHHHHHHHHcCCc
Confidence 69999999999987766433
No 291
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=80.22 E-value=1.4 Score=31.12 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||||++++..+...
T Consensus 19 sGKStLv~kLA~~fnt~ 35 (187)
T COG3172 19 SGKSTLVNKLANIFNTT 35 (187)
T ss_pred cChHHHHHHHHHHhCCC
Confidence 59999999999976543
No 292
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=80.16 E-value=33 Score=28.50 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=45.4
Q ss_pred ceEEE-EecchhHHhhc----CC-CceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHH-
Q 039644 97 SRIIL-TTRNKQVLRNW----GV-SKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSC- 169 (192)
Q Consensus 97 ~~iiv-TtR~~~~~~~~----~~-~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~- 169 (192)
=|||| ||....-..+. |. ..-+.|+.-+...-..|+.++..... +++ +..+|.+...+.-+.=+.+++
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h~----L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DHR----LFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-Ccc----hhHHHHHHhhcCccCHHHHHHH
Confidence 35555 66654433222 22 23467888888888888888764422 233 344455555566555455555
Q ss_pred HhccC-C-HHHHHHHHHHH
Q 039644 170 FLHKR-E-KEVWESAIDKL 186 (192)
Q Consensus 170 ~l~~~-~-~~~w~~~l~~l 186 (192)
+|..+ + ....+.+.+.+
T Consensus 413 lm~~~~dad~~lk~Lv~~l 431 (457)
T KOG0743|consen 413 LMKNKNDADVALKGLVEAL 431 (457)
T ss_pred HhhccccHHHHHHHHHHHH
Confidence 55555 3 33334444433
No 293
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=80.12 E-value=27 Score=27.40 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=48.3
Q ss_pred CceEEEEEeCCCCchh--HHHhhccCCCCCCCceEEEEecchh-HHhh-cCCCceEecCCCCHHHHHHHHHHh
Q 039644 67 RMKVLIVFDDVTCFSQ--LESLMGSLDWLTPVSRIILTTRNKQ-VLRN-WGVSKIYEMEALEYHHALELFSQH 135 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~iivTtR~~~-~~~~-~~~~~~~~l~~l~~~ea~~lf~~~ 135 (192)
+.+=++|+|+++.... ...+...+.+...++.+|++|.+.. +... .+....+++.+++.++..+.+...
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 4667899999986643 6677777766667777777665433 3322 255788999999999988776553
No 294
>PRK10867 signal recognition particle protein; Provisional
Probab=80.12 E-value=26 Score=29.05 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||++..++..+...
T Consensus 111 sGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 111 AGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 69999999988865544
No 295
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=80.04 E-value=11 Score=29.14 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=69.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhc-CCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRL-SRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 79 (192)
.|||-+|+.+++..+.-| +. + ...+++ .+.++.... .+.++.... +.-+|++.||.++.
T Consensus 162 TGKTm~Akalane~kvp~-----l~-v--------kat~li---GehVGdgar---~Ihely~rA~~~aPcivFiDE~DA 221 (368)
T COG1223 162 TGKTMMAKALANEAKVPL-----LL-V--------KATELI---GEHVGDGAR---RIHELYERARKAAPCIVFIDELDA 221 (368)
T ss_pred ccHHHHHHHHhcccCCce-----EE-e--------chHHHH---HHHhhhHHH---HHHHHHHHHHhcCCeEEEehhhhh
Confidence 499999999999765432 22 1 222222 222221111 233333333 34699999999863
Q ss_pred ch--------------hHHHhhccCCCC--CCCceEEEEecchhHHhhc---CCCceEecCCCCHHHHHHHHHHhhcCCC
Q 039644 80 FS--------------QLESLMGSLDWL--TPVSRIILTTRNKQVLRNW---GVSKIYEMEALEYHHALELFSQHAFKRN 140 (192)
Q Consensus 80 ~~--------------~~~~l~~~~~~~--~~~~~iivTtR~~~~~~~~---~~~~~~~l~~l~~~ea~~lf~~~~~~~~ 140 (192)
.. ..+.+...+... +.|..-|-.|.+....... ...+.++...-+.+|-.+++..++-.-.
T Consensus 222 iaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P 301 (368)
T COG1223 222 IALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP 301 (368)
T ss_pred hhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC
Confidence 21 134444444332 2444455556555544332 2345566666688888888888763222
Q ss_pred CCCccHHHHHHHHHHHhCCC
Q 039644 141 HPDVGYEKLSSNVTKYAQGI 160 (192)
Q Consensus 141 ~~~~~~~~~~~~i~~~~~g~ 160 (192)
-+. +...+.++++.+|+
T Consensus 302 lpv---~~~~~~~~~~t~g~ 318 (368)
T COG1223 302 LPV---DADLRYLAAKTKGM 318 (368)
T ss_pred Ccc---ccCHHHHHHHhCCC
Confidence 111 11234455555555
No 296
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=79.85 E-value=1.3 Score=32.67 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||||+.+++++.
T Consensus 15 ~GKSTLa~~La~~l~ 29 (216)
T COG1428 15 AGKSTLAQALAEHLG 29 (216)
T ss_pred cCHHHHHHHHHHHhC
Confidence 599999999999876
No 297
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=79.82 E-value=1.1 Score=31.24 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=11.9
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||++.+...
T Consensus 10 tGKTTL~~~L~~~ 22 (163)
T PF13521_consen 10 TGKTTLIEALAAR 22 (163)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 6999999999987
No 298
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=79.74 E-value=1.3 Score=31.40 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHH
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNI 48 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~ 48 (192)
+||||+|..+.+-+.+ |-..=++.... .....+.+..++.+
T Consensus 10 CGKTTva~aL~~LFg~------wgHvQnDnI~~-k~~~~f~~~~l~~L 50 (168)
T PF08303_consen 10 CGKTTVALALSNLFGE------WGHVQNDNITG-KRKPKFIKAVLELL 50 (168)
T ss_pred cCHHHHHHHHHHHcCC------CCccccCCCCC-CCHHHHHHHHHHHH
Confidence 7999999999886543 32211111222 24556666666555
No 299
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=79.68 E-value=3.3 Score=36.74 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=37.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC---------cCchHHHHhhcC-CceE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV---------MPYIDLNFRRLS-RMKV 70 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~l~~~l~-~~~~ 70 (192)
+|||+||.+++......-..++|++.-.. +.. ..++.++-+.+. ......+...++ +..-
T Consensus 71 sGKTtLal~~~~~a~~~G~~v~yId~E~t-----~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~ 140 (790)
T PRK09519 71 SGKTTVALHAVANAQAAGGVAAFIDAEHA-----LDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALD 140 (790)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEECCccc-----hhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCe
Confidence 69999999987765444466788873211 221 233333322111 113333444443 3567
Q ss_pred EEEEeCCC
Q 039644 71 LIVFDDVT 78 (192)
Q Consensus 71 LlVlDdv~ 78 (192)
|+|+|.+.
T Consensus 141 LVVIDSI~ 148 (790)
T PRK09519 141 IVVIDSVA 148 (790)
T ss_pred EEEEcchh
Confidence 99999986
No 300
>PRK06696 uridine kinase; Validated
Probab=79.60 E-value=1.6 Score=32.38 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||||+.++..+...
T Consensus 33 sGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 33 SGKTTFADELAEEIKKR 49 (223)
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 69999999999977543
No 301
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=79.59 E-value=6.6 Score=32.23 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||...++....
T Consensus 148 ~GKTtLl~~i~~~~~ 162 (413)
T TIGR03497 148 VGKSTLLGMIARNAK 162 (413)
T ss_pred CCHHHHHHHHhCCCC
Confidence 599999998887554
No 302
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=79.56 E-value=4.3 Score=33.50 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=12.3
Q ss_pred CCceEEEEEeCCCCc
Q 039644 66 SRMKVLIVFDDVTCF 80 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~ 80 (192)
++++.|+++||+...
T Consensus 243 ~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 243 NGKRVVLLADSLTRY 257 (433)
T ss_pred CCCcEEEEEeCHHHH
Confidence 478999999999643
No 303
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.33 E-value=8.7 Score=28.62 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=16.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
.|||.|.++++.-.-..=..+.+++
T Consensus 39 tGKSvLsqr~~YG~L~~g~~v~yvs 63 (235)
T COG2874 39 TGKSVLSQRFAYGFLMNGYRVTYVS 63 (235)
T ss_pred ccHHHHHHHHHHHHHhCCceEEEEE
Confidence 4999999999885333323445553
No 304
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=79.22 E-value=8.4 Score=32.76 Aligned_cols=23 Identities=13% Similarity=-0.109 Sum_probs=18.5
Q ss_pred CceEecCCCCHHHHHHHHHHhhc
Q 039644 115 SKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 115 ~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
...+.+.+++.+|..+++...+-
T Consensus 255 ~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 255 CVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred hheeeCCCCCHHHHHHHHHHHHH
Confidence 35688999999998888887663
No 305
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=79.19 E-value=9.6 Score=32.40 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=36.3
Q ss_pred HHhhcCCceEEEEEeCCCCchh---HHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecCC
Q 039644 61 NFRRLSRMKVLIVFDDVTCFSQ---LESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEA 122 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~ 122 (192)
+...+-..+-+||||.-.+.-+ .+.+-.++..+ .|+ ||+.|.++....... .+.+.+.+
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhc-ceEEEEcC
Confidence 4455567889999998875432 33333333332 243 888898887776653 44555553
No 306
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=79.19 E-value=12 Score=30.95 Aligned_cols=104 Identities=18% Similarity=0.146 Sum_probs=51.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcC-------CCCc-C--------chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKD-------KNVM-P--------YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~-~--------~~~~l~~~ 64 (192)
+|||||+..++...+.. ..++... .. ......+++...+..-.-. ..+. . ....+.++
T Consensus 167 ~GKTtLl~~Ia~~~~~~-~gvI~~i--Ge---rg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 167 VGKSTLLGMIAKNAKAD-INVISLV--GE---RGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred CChHHHHHHHhccCCCC-eEEEEeC--CC---CcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999998865432 2333332 11 1145556655444432110 0110 0 22223333
Q ss_pred c--CCceEEEEEeCCCCchh-HHHh---hccCCCCCCCceEEEEecchhHHhhc
Q 039644 65 L--SRMKVLIVFDDVTCFSQ-LESL---MGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 65 l--~~~~~LlVlDdv~~~~~-~~~l---~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
+ .+++.|+++||+....+ ...+ ....|. .|.-..+.|....+....
T Consensus 241 fr~~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHh
Confidence 4 46899999999976543 2332 222332 255555555544444443
No 307
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=79.17 E-value=4.5 Score=33.39 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++....
T Consensus 168 ~GKStLl~~i~~~~~ 182 (434)
T PRK08472 168 VGKSTLMGMIVKGCL 182 (434)
T ss_pred CCHHHHHHHHhhccC
Confidence 699999999987554
No 308
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=79.16 E-value=1.3 Score=31.39 Aligned_cols=16 Identities=19% Similarity=0.619 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||||++.+++.++.
T Consensus 10 ~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 10 VGKTTLLKKVIEELKK 25 (168)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhc
Confidence 6999999999997643
No 309
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=79.15 E-value=1.1 Score=40.26 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=27.2
Q ss_pred CceEEEEEeCCCC---chh----HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 67 RMKVLIVFDDVTC---FSQ----LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 67 ~~~~LlVlDdv~~---~~~----~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
+.+-|+++|.+-. ..+ ...+...+.. ..++.+|++|....+....
T Consensus 685 t~~sLvllDE~GrGTs~~dg~aia~aile~l~~-~~~~~~l~aTH~~el~~l~ 736 (854)
T PRK05399 685 TERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHD-KIGAKTLFATHYHELTELE 736 (854)
T ss_pred CCCcEEEEecCCCCCCcchhHHHHHHHHHHHHh-cCCceEEEEechHHHHHHh
Confidence 4789999999932 222 1122222222 2357899999987766554
No 310
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.98 E-value=45 Score=29.76 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=72.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHh-hcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFR-RLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~ 79 (192)
+|||-||..++....- -++++=++ +++....+.+++ .++.+.. .-..++|+|.||.+++
T Consensus 712 cGKT~la~a~a~~~~~-----~fisvKGP-------------ElL~KyIGaSEq--~vR~lF~rA~~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 712 CGKTLLASAIASNSNL-----RFISVKGP-------------ELLSKYIGASEQ--NVRDLFERAQSAKPCILFFDEFDS 771 (952)
T ss_pred CcHHHHHHHHHhhCCe-----eEEEecCH-------------HHHHHHhcccHH--HHHHHHHHhhccCCeEEEeccccc
Confidence 6999999999886533 34543222 334444343332 2333333 3356899999999975
Q ss_pred ch-------------hHHHhhccCCCC--CCCceEEEEecchhHHhhc-----CCCceEecCCCCHHHHHHHHHHhhcCC
Q 039644 80 FS-------------QLESLMGSLDWL--TPVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSQHAFKR 139 (192)
Q Consensus 80 ~~-------------~~~~l~~~~~~~--~~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~~ea~~lf~~~~~~~ 139 (192)
.. ...++...+... -.|.-|+-.|..++..... .-.+.+..+.-+..+-.++|......-
T Consensus 772 iAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~ 851 (952)
T KOG0735|consen 772 IAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL 851 (952)
T ss_pred cCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc
Confidence 32 145666555432 2454444433333322221 123445555556677777776655321
Q ss_pred C-CCCccHHHHHHHHHHHhCCCchH
Q 039644 140 N-HPDVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 140 ~-~~~~~~~~~~~~i~~~~~g~Pla 163 (192)
. ..+.. .+.+..+.+|+.-|
T Consensus 852 ~~~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 852 LKDTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred CCccccc----hHHHhhhcCCCchh
Confidence 1 11222 33455566666544
No 311
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=78.94 E-value=12 Score=24.25 Aligned_cols=25 Identities=20% Similarity=-0.029 Sum_probs=17.9
Q ss_pred CchhHHHHHHHHHhhC--CCcceEEEe
Q 039644 1 IGKTAIARAIFDKISG--DFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~--~F~~~~wv~ 25 (192)
+|||+.+..+..+... ....++++.
T Consensus 11 ~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 11 SGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 5999999998886432 445666664
No 312
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=78.77 E-value=3.7 Score=34.53 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=12.3
Q ss_pred CCceEEEEEeCCCCc
Q 039644 66 SRMKVLIVFDDVTCF 80 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~ 80 (192)
++++.||++||+...
T Consensus 251 ~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 251 NGKHALIIYDDLSKH 265 (501)
T ss_pred cCCCEEEEecchHHH
Confidence 478999999999643
No 313
>PRK03839 putative kinase; Provisional
Probab=78.67 E-value=1.5 Score=31.22 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.+++++.
T Consensus 11 sGKsT~~~~La~~~~ 25 (180)
T PRK03839 11 VGKTTVSKLLAEKLG 25 (180)
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999999864
No 314
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=78.61 E-value=12 Score=31.09 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=53.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcC---------CCC--cC-----chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKD---------KNV--MP-----YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~--~~-----~~~~l~~~ 64 (192)
.|||++|.--.-.-+..=-..++|. ++.. ..++..+.+.+-+.-.-. ++. .. .-..+.++
T Consensus 173 TGKTaIAidtIiNQk~~~v~CIYVA-IGQK---~stva~vv~tL~e~gAmdyTiVV~AsASd~a~lqYLaPy~g~a~aE~ 248 (504)
T COG0056 173 TGKTAIAIDTIINQKGSGVKCIYVA-IGQK---RSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEY 248 (504)
T ss_pred CCcchhhHHHHHhcccCCcEEEEEE-cccc---hHHHHHHHHHHHHcCCccceEEEEecCCcchhhhhhhhhhhhHHHHH
Confidence 4999998765442222223446665 3221 134555554443331100 010 11 22233444
Q ss_pred c--CCceEEEEEeCCCCchh----HHHhhccCCCCC--CCceEEEEecchhHHhhc
Q 039644 65 L--SRMKVLIVFDDVTCFSQ----LESLMGSLDWLT--PVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 65 l--~~~~~LlVlDdv~~~~~----~~~l~~~~~~~~--~~~~iivTtR~~~~~~~~ 112 (192)
+ .++..|+|+||+..... ...+....|... +|..+.+.||.-.-+..+
T Consensus 249 f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl 304 (504)
T COG0056 249 FRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKL 304 (504)
T ss_pred HHhcCCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhh
Confidence 4 46899999999976543 333333333222 566666677765544443
No 315
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=78.61 E-value=5.7 Score=35.75 Aligned_cols=45 Identities=11% Similarity=0.072 Sum_probs=28.4
Q ss_pred CceEEEEEeCCCCch---h----HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 67 RMKVLIVFDDVTCFS---Q----LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~---~----~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
+.+.|+++|.+-... + ...+...+.. ..+++++++|.........
T Consensus 670 t~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~-~~~~~~~~~TH~~eL~~l~ 721 (840)
T TIGR01070 670 TENSLVLFDEIGRGTSTYDGLALAWAIAEYLHE-HIRAKTLFATHYFELTALE 721 (840)
T ss_pred CCCEEEEEccCCCCCChhHHHHHHHHHHHHHHh-cCCCEEEEEcCchHHHHHh
Confidence 578999999995432 1 1222223322 2567899999987766554
No 316
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=78.47 E-value=5.4 Score=33.00 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=15.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFL 24 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv 24 (192)
+|||||+..++...... .+.+++
T Consensus 169 ~GKStLl~~I~~~~~~~-~gvI~~ 191 (438)
T PRK07721 169 VGKSTLMGMIARNTSAD-LNVIAL 191 (438)
T ss_pred CCHHHHHHHHhcccCCC-eEEEEE
Confidence 59999999888754432 344444
No 317
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.29 E-value=5.1 Score=35.48 Aligned_cols=61 Identities=25% Similarity=0.301 Sum_probs=37.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
.|||-||++|+.+.+-. |+++=++ +++...-++++ .+..+.+.+.-...+|.|.||.+++.
T Consensus 716 TGKTLlAKAVATEcsL~-----FlSVKGP-------------ELLNMYVGqSE-~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 716 TGKTLLAKAVATECSLN-----FLSVKGP-------------ELLNMYVGQSE-ENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred CchHHHHHHHHhhceee-----EEeecCH-------------HHHHHHhcchH-HHHHHHHHHhhccCCeEEEecccccc
Confidence 59999999999987543 4542222 33444333332 11333344444568999999999753
No 318
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=78.19 E-value=5.3 Score=28.46 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+++.+++.+..
T Consensus 11 sGKtT~~~~L~~~l~~ 26 (200)
T cd01672 11 AGKTTLIELLAERLEA 26 (200)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999998754
No 319
>PRK00131 aroK shikimate kinase; Reviewed
Probab=78.17 E-value=1.6 Score=30.49 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+++++.
T Consensus 15 sGKstla~~La~~l~ 29 (175)
T PRK00131 15 AGKSTIGRLLAKRLG 29 (175)
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999999873
No 320
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=78.15 E-value=2.6 Score=32.56 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||||+..+...++++. .+.-+.
T Consensus 12 SGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 12 TGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred CCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 699999999999988776 444444
No 321
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=78.09 E-value=5.1 Score=32.42 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=50.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCC-----------CCcC-----chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDK-----------NVMP-----YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~-----~~~~l~~~ 64 (192)
+|||.|..++.+.+.....+..-+..+++-.. -=-+++.++.+.-.... +... .--.+.++
T Consensus 158 VGKTVl~~ELI~Nia~~h~g~SVFaGvGERtR---EGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEy 234 (468)
T COG0055 158 VGKTVLIQELINNIAKEHGGYSVFAGVGERTR---EGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEY 234 (468)
T ss_pred ccceeeHHHHHHHHHHHcCCeEEEEecccccc---chHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehhhhhhHHHH
Confidence 69999999999987766666555555555332 34566666655522110 1100 11112333
Q ss_pred c---CCceEEEEEeCCCCc----hhHHHhhccCC
Q 039644 65 L---SRMKVLIVFDDVTCF----SQLESLMGSLD 91 (192)
Q Consensus 65 l---~~~~~LlVlDdv~~~----~~~~~l~~~~~ 91 (192)
+ .++..|+.+||+..- .+...+....|
T Consensus 235 fRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~P 268 (468)
T COG0055 235 FRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 268 (468)
T ss_pred hhcccCCeEEEEehhhhHHhhcchHHHHHhccCc
Confidence 3 367999999999632 33444444443
No 322
>PRK05480 uridine/cytidine kinase; Provisional
Probab=78.03 E-value=1.6 Score=31.95 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||||+.++..+
T Consensus 17 sGKTTl~~~l~~~l 30 (209)
T PRK05480 17 SGKTTVASTIYEEL 30 (209)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999876
No 323
>PRK14700 recombination factor protein RarA; Provisional
Probab=77.71 E-value=8.7 Score=30.01 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=43.3
Q ss_pred CCCCceEEE--EecchhHHhhc---CCCceEecCCCCHHHHHHHHHHhhcC----CCCCCccHHHHHHHHHHHhCCCc
Q 039644 93 LTPVSRIIL--TTRNKQVLRNW---GVSKIYEMEALEYHHALELFSQHAFK----RNHPDVGYEKLSSNVTKYAQGIP 161 (192)
Q Consensus 93 ~~~~~~iiv--TtR~~~~~~~~---~~~~~~~l~~l~~~ea~~lf~~~~~~----~~~~~~~~~~~~~~i~~~~~g~P 161 (192)
...|.-++| ||.++...-.. +..+++.+++|+.++...++.+.... +...-...++....|++.|+|--
T Consensus 4 vE~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDa 81 (300)
T PRK14700 4 VESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDC 81 (300)
T ss_pred ccCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHH
Confidence 345665555 66665533222 45689999999999999999886532 11112234555666777777653
No 324
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=77.23 E-value=1.7 Score=29.61 Aligned_cols=18 Identities=17% Similarity=0.676 Sum_probs=14.5
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+|||||++.++......|
T Consensus 10 sGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 10 VGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CCHHHHHHHHHhcCCccc
Confidence 699999999998765443
No 325
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=77.19 E-value=2.8 Score=29.72 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=20.5
Q ss_pred CchhHHHHHHHHHhhCC-Cc-ceEEEeecc
Q 039644 1 IGKTAIARAIFDKISGD-FE-CSCFLENVR 28 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~-~~~wv~~~~ 28 (192)
+||||++..+++.+++. |. +.+|..-++
T Consensus 16 vGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 16 VGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred ccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 69999999999987766 64 455544343
No 326
>PRK13975 thymidylate kinase; Provisional
Probab=77.12 E-value=1.8 Score=31.10 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+|+.+++++..
T Consensus 13 sGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 13 SGKTTQAKLLAEKLNA 28 (196)
T ss_pred CCHHHHHHHHHHHhCC
Confidence 6999999999998764
No 327
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=76.95 E-value=35 Score=28.28 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|..++..+.
T Consensus 110 sGKTTtaakLA~~l~ 124 (428)
T TIGR00959 110 SGKTTTCGKLAYYLK 124 (428)
T ss_pred CcHHHHHHHHHHHHH
Confidence 699999999988753
No 328
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.85 E-value=5 Score=30.99 Aligned_cols=88 Identities=19% Similarity=0.405 Sum_probs=48.1
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCC-ceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSR-MKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~ 79 (192)
.|||-+|+.|+++... +|+.+++. ++.....+.+. ..+.++.+-.++ +.|+|.||.++.
T Consensus 222 tgktl~aravanrtda-----cfirvigs-------------elvqkyvgega--rmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 222 TGKTLCARAVANRTDA-----CFIRVIGS-------------ELVQKYVGEGA--RMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred CchhHHHHHHhcccCc-----eEEeehhH-------------HHHHHHhhhhH--HHHHHHHHHhcccceEEEEeecccc
Confidence 4999999999998765 44544332 22222222111 134444444444 678999998852
Q ss_pred c------------hh----HHHhhccCCCCC--CCceEEEEecchhH
Q 039644 80 F------------SQ----LESLMGSLDWLT--PVSRIILTTRNKQV 108 (192)
Q Consensus 80 ~------------~~----~~~l~~~~~~~~--~~~~iivTtR~~~~ 108 (192)
. .+ .-.+..++..+. .+-+|+..|..+..
T Consensus 282 iggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 282 IGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred ccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 1 11 223344454444 34478887765543
No 329
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=76.85 E-value=1.8 Score=29.53 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||++.+++.+
T Consensus 33 aGKTtl~~~l~~~l 46 (133)
T TIGR00150 33 AGKTTLVQGLLQGL 46 (133)
T ss_pred CCHHHHHHHHHHHc
Confidence 59999999999964
No 330
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=76.82 E-value=12 Score=31.11 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||+|+.++++...
T Consensus 152 vGKs~L~~~i~~~~~ 166 (466)
T TIGR01040 152 LPHNEIAAQICRQAG 166 (466)
T ss_pred CCHHHHHHHHHHhhc
Confidence 699999999988653
No 331
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=76.75 E-value=12 Score=26.69 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+|+.+...+..
T Consensus 29 sGKstla~~l~~~l~~ 44 (184)
T TIGR00455 29 SGKSTIANALEKKLES 44 (184)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5999999999997643
No 332
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=76.47 E-value=3.2 Score=29.45 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+||.+++......=..++|++
T Consensus 10 ~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 10 TGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6999999999886544445677886
No 333
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=76.37 E-value=1.9 Score=28.05 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||.+.++..
T Consensus 10 ~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 10 VGKTSLIRRLCGG 22 (119)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999984
No 334
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.35 E-value=7.3 Score=31.91 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=42.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCC-------C-cC--------chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKN-------V-MP--------YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~-~~--------~~~~l~~~ 64 (192)
+|||||.-++++.-+..-..+.-+ ++-- .-+.+++...+..-+.... + .. ....+.++
T Consensus 174 VGKStLLgMiar~t~aDv~ViaLI---GERG---REVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEy 247 (441)
T COG1157 174 VGKSTLLGMIARNTEADVNVIALI---GERG---REVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEY 247 (441)
T ss_pred CcHHHHHHHHhccccCCEEEEEEe---eccc---hhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999654332222222 2211 3566666655554432211 1 00 44456777
Q ss_pred cC--CceEEEEEeCCC
Q 039644 65 LS--RMKVLIVFDDVT 78 (192)
Q Consensus 65 l~--~~~~LlVlDdv~ 78 (192)
++ +++.||++|.+.
T Consensus 248 FRDqG~~VLL~mDSlT 263 (441)
T COG1157 248 FRDQGKRVLLIMDSLT 263 (441)
T ss_pred HHhCCCeEEEEeecHH
Confidence 74 589999999994
No 335
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=76.26 E-value=7.8 Score=32.10 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||...++....
T Consensus 174 ~GKStLl~~I~~~~~ 188 (440)
T TIGR01026 174 VGKSTLLGMIARNTE 188 (440)
T ss_pred CCHHHHHHHHhCCCC
Confidence 599999998887653
No 336
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=76.10 E-value=1.8 Score=31.31 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||||+.++..+
T Consensus 10 sGKTtla~~l~~~~ 23 (187)
T cd02024 10 SGKTTLAKLLQRIL 23 (187)
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999999975
No 337
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=76.10 E-value=4.6 Score=33.98 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=12.5
Q ss_pred CCceEEEEEeCCCCc
Q 039644 66 SRMKVLIVFDDVTCF 80 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~ 80 (192)
++++.|+|+||+...
T Consensus 252 ~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 252 QGQDALIVYDDLSKH 266 (502)
T ss_pred CCCCEEEEecchHHH
Confidence 478999999999644
No 338
>PRK00889 adenylylsulfate kinase; Provisional
Probab=75.98 E-value=3 Score=29.45 Aligned_cols=16 Identities=50% Similarity=0.704 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+|+.++.....
T Consensus 15 sGKST~a~~la~~l~~ 30 (175)
T PRK00889 15 AGKTTIARALAEKLRE 30 (175)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999998753
No 339
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=75.57 E-value=1.9 Score=31.98 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+|+++++.+++.
T Consensus 12 sGKTtfakeLak~L~~~ 28 (261)
T COG4088 12 SGKTTFAKELAKELRQE 28 (261)
T ss_pred CCchHHHHHHHHHHHHh
Confidence 69999999999976554
No 340
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=75.49 E-value=2.1 Score=31.84 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||||+.+...+.
T Consensus 10 SGKTTla~~L~~~l~ 24 (220)
T cd02025 10 VGKSTTARVLQALLS 24 (220)
T ss_pred CCHHHHHHHHHHHHh
Confidence 699999999999765
No 341
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=75.46 E-value=2.5 Score=28.67 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=23.1
Q ss_pred ceEEEEEeCCCCchh--HHHhhccCCCC-CCCceEEEEecch
Q 039644 68 MKVLIVFDDVTCFSQ--LESLMGSLDWL-TPVSRIILTTRNK 106 (192)
Q Consensus 68 ~~~LlVlDdv~~~~~--~~~l~~~~~~~-~~~~~iivTtR~~ 106 (192)
+.--|+|+|++.... ...+...+... ..+.|+|.||+..
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 445688999986542 33443333322 4677999998753
No 342
>PRK04040 adenylate kinase; Provisional
Probab=75.37 E-value=2.6 Score=30.47 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.++.++.
T Consensus 13 ~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 13 VGKTTVLNKALEKLK 27 (188)
T ss_pred CCHHHHHHHHHHHhc
Confidence 699999999999875
No 343
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=75.34 E-value=8.8 Score=31.64 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||...++....
T Consensus 156 ~GKStLl~~I~~~~~ 170 (422)
T TIGR02546 156 VGKSTLLGMIARGAS 170 (422)
T ss_pred CChHHHHHHHhCCCC
Confidence 599999999988654
No 344
>PRK03846 adenylylsulfate kinase; Provisional
Probab=75.32 E-value=3.4 Score=29.96 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=17.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||+.+...+...-...+++.
T Consensus 35 sGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 35 SGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 6999999999997644333345554
No 345
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=75.27 E-value=17 Score=30.40 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=39.9
Q ss_pred CchhHHHHHHHHHhh--CCCc--ceEEEeeccccccCCCChHHHHHHHHHHHhc----------CCCC-cC-----chHH
Q 039644 1 IGKTAIARAIFDKIS--GDFE--CSCFLENVREESQRPGGLACLRQKLLSNILK----------DKNV-MP-----YIDL 60 (192)
Q Consensus 1 iGKTtLa~~~~~~~~--~~F~--~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~-~~-----~~~~ 60 (192)
+|||+|+.++++... +.+. .++++. +++- ...+.+++..++..-.- +.+. .. ..-.
T Consensus 152 ~GKs~L~~~ia~~~~ad~~~~~~v~V~~~-iGER---grEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~t 227 (458)
T TIGR01041 152 LPHNELAAQIARQATVRGEESEFAVVFAA-MGIT---YEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALT 227 (458)
T ss_pred CCHHHHHHHHHHhhcccCCCCceEEEEEE-cccc---chHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 699999999998643 2222 233333 3321 13556666655432110 0111 00 2223
Q ss_pred HHhhcC---CceEEEEEeCCCC
Q 039644 61 NFRRLS---RMKVLIVFDDVTC 79 (192)
Q Consensus 61 l~~~l~---~~~~LlVlDdv~~ 79 (192)
+.++++ +++.||++||+..
T Consensus 228 iAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 228 AAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHccCCcEEEEEcChhH
Confidence 445554 6799999999954
No 346
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=75.03 E-value=3.3 Score=29.56 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||||+..++.....+|...+...
T Consensus 13 ~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 13 SGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCHHHHHHHHHHhcccccccceeec
Confidence 6999999999999988887655554
No 347
>PRK10646 ADP-binding protein; Provisional
Probab=75.03 E-value=2.1 Score=29.95 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
.||||+++.+++.+
T Consensus 39 aGKTtf~rgl~~~L 52 (153)
T PRK10646 39 AGKTTFSRGFLQAL 52 (153)
T ss_pred CCHHHHHHHHHHHc
Confidence 59999999999953
No 348
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=74.99 E-value=21 Score=26.77 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=26.5
Q ss_pred CceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 67 RMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
+++.|+++|.+-.... ...+...+.. ..++.+++||....+....
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~-~~~~~~i~~TH~~~l~~~~ 172 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLE-KSGCFVIIATHFHELAELL 172 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHH-TTT-EEEEEES-GGGGGHH
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHH-hccccEEEEeccchhHHHh
Confidence 4688999999975432 1122222221 1467899999998876654
No 349
>PRK00625 shikimate kinase; Provisional
Probab=74.94 E-value=2.3 Score=30.32 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.+++++.
T Consensus 11 sGKTT~~k~La~~l~ 25 (173)
T PRK00625 11 VGKTSFGKALAKFLS 25 (173)
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999999864
No 350
>PRK13947 shikimate kinase; Provisional
Probab=74.89 E-value=2.3 Score=29.85 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+|+.+++++.-
T Consensus 12 sGKst~a~~La~~lg~ 27 (171)
T PRK13947 12 TGKTTVGKRVATTLSF 27 (171)
T ss_pred CCHHHHHHHHHHHhCC
Confidence 6999999999998743
No 351
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=74.74 E-value=4.6 Score=33.47 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.4
Q ss_pred CCceEEEEEeCCCCc
Q 039644 66 SRMKVLIVFDDVTCF 80 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~ 80 (192)
++++.|+++||+...
T Consensus 256 ~G~~VLl~~DslTR~ 270 (451)
T PRK05688 256 KGKNVLLLMDSLTRF 270 (451)
T ss_pred CCCCEEEEecchhHH
Confidence 478999999999643
No 352
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=74.66 E-value=3.5 Score=29.69 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=18.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFL 24 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv 24 (192)
+||||+|..+.+++.+......-.
T Consensus 34 sGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 34 SGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEe
Confidence 599999999999987765444444
No 353
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=74.62 E-value=5.8 Score=33.37 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=36.9
Q ss_pred CchhHHHH-HHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh--------cCCCC--cC---------chHH
Q 039644 1 IGKTAIAR-AIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL--------KDKNV--MP---------YIDL 60 (192)
Q Consensus 1 iGKTtLa~-~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~--~~---------~~~~ 60 (192)
+|||++|. .++++-...+.+ +++. ++.. ...+.++...+...-. ...+. .. ..++
T Consensus 154 tGKT~lal~~I~~q~~~dv~~-V~~~-IGer---~~ev~~~~~~l~~~gal~~tvvV~atsd~~~~r~~ap~~a~tiAEy 228 (507)
T PRK07165 154 TGKTHIALNTIINQKNTNVKC-IYVA-IGQK---RENLSRIYETLKEHDALKNTIIIDAPSTSPYEQYLAPYVAMAHAEN 228 (507)
T ss_pred CCccHHHHHHHHHhcCCCeEE-EEEE-ccCC---hHHHHHHHHHhhhcCceeeeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 69999964 455554433322 4443 3321 1355666666554311 01111 11 2333
Q ss_pred HHhhcCCceEEEEEeCCCCc
Q 039644 61 NFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~ 80 (192)
++.. ++.|+|+||+...
T Consensus 229 frd~---~dVLlv~DdLTr~ 245 (507)
T PRK07165 229 ISYN---DDVLIVFDDLTKH 245 (507)
T ss_pred HHhc---CceEEEEcChHHH
Confidence 3333 8999999999543
No 354
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=74.34 E-value=2.2 Score=29.21 Aligned_cols=14 Identities=21% Similarity=0.655 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+....
T Consensus 10 sGKST~a~~l~~~~ 23 (150)
T cd02021 10 SGKSTVGKALAERL 23 (150)
T ss_pred CCHHHHHHHHHhhc
Confidence 69999999998874
No 355
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=74.14 E-value=6.4 Score=28.28 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=31.0
Q ss_pred hHHHHhhcCCceE-EEEEeCCCCch-----hHHHhhccCCCCCCCceEEEEecchhHH
Q 039644 58 IDLNFRRLSRMKV-LIVFDDVTCFS-----QLESLMGSLDWLTPVSRIILTTRNKQVL 109 (192)
Q Consensus 58 ~~~l~~~l~~~~~-LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~iivTtR~~~~~ 109 (192)
.+..++.+.+..| |+|||.+..-- ..+.+...+.....+..||+|-|+....
T Consensus 104 ~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~ 161 (178)
T PRK07414 104 WQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPES 161 (178)
T ss_pred HHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHH
Confidence 3444555555554 99999995321 2233333344444577899999985533
No 356
>PRK06547 hypothetical protein; Provisional
Probab=74.13 E-value=2.6 Score=30.04 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+++..
T Consensus 26 sGKTt~a~~l~~~~ 39 (172)
T PRK06547 26 SGKTTLAGALAART 39 (172)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999864
No 357
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.03 E-value=11 Score=27.61 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=21.7
Q ss_pred CchhHHHHHHHH-HhhCCCcceEEEeeccc
Q 039644 1 IGKTAIARAIFD-KISGDFECSCFLENVRE 29 (192)
Q Consensus 1 iGKTtLa~~~~~-~~~~~F~~~~wv~~~~~ 29 (192)
+|||+|...++. .+...|...|=++.++.
T Consensus 33 VGKTslItRf~yd~fd~~YqATIGiDFlsk 62 (221)
T KOG0094|consen 33 VGKTSLITRFMYDKFDNTYQATIGIDFLSK 62 (221)
T ss_pred cchHHHHHHHHHhhhcccccceeeeEEEEE
Confidence 699999999988 47777877666654433
No 358
>PRK07667 uridine kinase; Provisional
Probab=74.00 E-value=4.1 Score=29.46 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+|..+...+..
T Consensus 28 sGKStla~~L~~~l~~ 43 (193)
T PRK07667 28 SGKTTFVANLKENMKQ 43 (193)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6999999999997654
No 359
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=73.88 E-value=2.6 Score=29.39 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=15.2
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+||||++..++.++...|
T Consensus 6 ~GKStvg~~lA~~lg~~f 23 (161)
T COG3265 6 SGKSTVGSALAERLGAKF 23 (161)
T ss_pred cCHHHHHHHHHHHcCCce
Confidence 699999999999986443
No 360
>PRK06820 type III secretion system ATPase; Validated
Probab=73.66 E-value=12 Score=31.09 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=12.3
Q ss_pred CCceEEEEEeCCCCc
Q 039644 66 SRMKVLIVFDDVTCF 80 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~ 80 (192)
.+++.|+++||+...
T Consensus 251 ~G~~VLl~~Dsltr~ 265 (440)
T PRK06820 251 RGKKVLLMADSLTRY 265 (440)
T ss_pred cCCCEEEEccchhHH
Confidence 478999999999543
No 361
>PRK06936 type III secretion system ATPase; Provisional
Probab=73.60 E-value=5.9 Score=32.74 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=38.1
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHh--------cCCCC--cC------chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNIL--------KDKNV--MP------YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~--~~------~~~~l~~~ 64 (192)
+|||||...++..... +.+++.. +++-. ..+.++....+..-. ...++ .. ..-.+.++
T Consensus 173 ~GKStLl~~Ia~~~~~--dv~V~~l-iGERg---rEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEy 246 (439)
T PRK06936 173 GGKSTLLASLIRSAEV--DVTVLAL-IGERG---REVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEY 246 (439)
T ss_pred CChHHHHHHHhcCCCC--CEEEEEE-EccCc---HHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999986543 3344443 33311 234454433222110 00010 00 11223333
Q ss_pred c--CCceEEEEEeCCCCc
Q 039644 65 L--SRMKVLIVFDDVTCF 80 (192)
Q Consensus 65 l--~~~~~LlVlDdv~~~ 80 (192)
+ .+++.|+++||+...
T Consensus 247 frd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 247 FRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHcCCCEEEeccchhHH
Confidence 3 478999999999643
No 362
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=73.59 E-value=4.7 Score=29.56 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=28.5
Q ss_pred CCceEEEEEeCCCCch---h----HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 66 SRMKVLIVFDDVTCFS---Q----LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~---~----~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
..++-|+++|...... + ...+...+.. .++.+|++|.....+...
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAIL 157 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHh
Confidence 3568899999985432 2 1222222322 367899999988877665
No 363
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.54 E-value=51 Score=27.32 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||++..++...
T Consensus 234 vGKTTtaaKLA~~~ 247 (432)
T PRK12724 234 SGKTTSIAKLAAKY 247 (432)
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999754
No 364
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=73.53 E-value=2.3 Score=30.76 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||||+.+...+
T Consensus 10 sGKSTl~~~l~~~l 23 (198)
T cd02023 10 SGKTTVAEEIIEQL 23 (198)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999998865
No 365
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=73.44 E-value=2.3 Score=29.64 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+....
T Consensus 9 sGKSTla~~l~~~l 22 (163)
T TIGR01313 9 SGKSTIASALAHRL 22 (163)
T ss_pred CCHHHHHHHHHHhc
Confidence 69999999999886
No 366
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=73.26 E-value=2.3 Score=31.06 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++..+.
T Consensus 17 sGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 17 SGKTTVARKIYEQLG 31 (207)
T ss_pred CCHHHHHHHHHHHhc
Confidence 699999999998654
No 367
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=73.25 E-value=3.2 Score=30.25 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=18.8
Q ss_pred CchhHHHHHHHHHhhCCCcceE
Q 039644 1 IGKTAIARAIFDKISGDFECSC 22 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~ 22 (192)
+|||+|..+.+..+++.|...+
T Consensus 24 SGKTaLie~~~~~L~~~~~~aV 45 (202)
T COG0378 24 SGKTALIEKTLRALKDEYKIAV 45 (202)
T ss_pred cCHHHHHHHHHHHHHhhCCeEE
Confidence 6999999999999988887543
No 368
>PRK05973 replicative DNA helicase; Provisional
Probab=73.01 E-value=4.3 Score=30.60 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=18.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+||.+++.....+-..+++++
T Consensus 75 ~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 75 HGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 6999999999886544444566665
No 369
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=72.78 E-value=2.5 Score=31.08 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=10.6
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
.||||||+.+..
T Consensus 15 sGKTTLak~l~~ 26 (225)
T KOG3308|consen 15 SGKTTLAKSLHR 26 (225)
T ss_pred CCHhHHHHHHHH
Confidence 599999999876
No 370
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=72.59 E-value=2.8 Score=29.29 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=17.1
Q ss_pred CchhHHHHHHHHHhhCC-CcceEE
Q 039644 1 IGKTAIARAIFDKISGD-FECSCF 23 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~w 23 (192)
+|||||+..+...++.+ |...+.
T Consensus 10 sGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 10 SGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEE
Confidence 69999999999987654 444333
No 371
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=72.54 E-value=3.9 Score=30.84 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+|++++..+...
T Consensus 10 SGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 10 VGKSTFSKELAKKLSEK 26 (249)
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 69999999999987543
No 372
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=72.43 E-value=7.5 Score=32.39 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=40.8
Q ss_pred CchhHHHHHHHHHhhC-----CCcceEEEeeccccccCCCChHHHHHHHHHHHhcC--------CCC--cC------chH
Q 039644 1 IGKTAIARAIFDKISG-----DFECSCFLENVREESQRPGGLACLRQKLLSNILKD--------KNV--MP------YID 59 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~-----~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~--~~------~~~ 59 (192)
+|||+|+..+++.... .+ .++++. +++- ...+.+++..+...-.-. .++ .. ..-
T Consensus 154 ~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~-iGeR---grEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~ 228 (460)
T PRK04196 154 LPHNELAAQIARQAKVLGEEENF-AVVFAA-MGIT---FEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMAL 228 (460)
T ss_pred CCccHHHHHHHHhhhhccCCCce-EEEEEE-eccc---cHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHH
Confidence 6999999999886432 11 233433 3321 135666666665431100 000 00 333
Q ss_pred HHHhhcC---CceEEEEEeCCCC
Q 039644 60 LNFRRLS---RMKVLIVFDDVTC 79 (192)
Q Consensus 60 ~l~~~l~---~~~~LlVlDdv~~ 79 (192)
.+.++++ +++.||++||+..
T Consensus 229 tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 229 TAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHhcCCcEEEEEcChHH
Confidence 4556655 4899999999954
No 373
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=72.34 E-value=6.3 Score=32.36 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=14.5
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+|||++|+.++..+...|
T Consensus 127 sGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 127 SGKTLLAQTLARILNVPF 144 (413)
T ss_pred cCHHHHHHHHHHhcCCCe
Confidence 699999999998765444
No 374
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=72.09 E-value=4 Score=31.14 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=44.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEE-EeeccccccCCCChHHHHHHHHHHHhcCCCC-cCchHHHHhhcCCceEEEEEeCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCF-LENVREESQRPGGLACLRQKLLSNILKDKNV-MPYIDLNFRRLSRMKVLIVFDDVT 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~w-v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv~ 78 (192)
+||||++..+...+... ...+. +....+......+... +... .. .+..+.+...|+..+=.++++.+.
T Consensus 138 SGKTT~l~all~~i~~~-~~~iv~iEd~~E~~l~~~~~~~--------~~~~-~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 138 SGKTTLLNALLEEIPPE-DERIVTIEDPPELRLPGPNQIQ--------IQTR-RDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp SSHHHHHHHHHHHCHTT-TSEEEEEESSS-S--SCSSEEE--------EEEE-TTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred cccchHHHHHhhhcccc-ccceEEeccccceeecccceEE--------EEee-cCcccHHHHHHHHhcCCCCcccccccC
Confidence 69999999999977655 22222 2222111000000000 0000 11 335666777788888899999999
Q ss_pred CchhHHHhhccCCCCCCCceEEEEe
Q 039644 79 CFSQLESLMGSLDWLTPVSRIILTT 103 (192)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~iivTt 103 (192)
+...+..+ ... ..|..+-+||
T Consensus 208 ~~e~~~~~-~a~---~tGh~~~~tT 228 (270)
T PF00437_consen 208 DPEAAEAI-QAA---NTGHLGSLTT 228 (270)
T ss_dssp SCHHHHHH-HHH---HTT-EEEEEE
T ss_pred CHhHHHHH-Hhh---ccCCceeeee
Confidence 88776663 222 3455563444
No 375
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=72.04 E-value=27 Score=30.41 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=33.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCc-eEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRM-KVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~ 79 (192)
+|||-++++|+++...+ ++.. +-.+++. .+.+... ..+...+......+ +.+|-+|+++.
T Consensus 229 ~Gkt~l~~aVa~e~~a~----~~~i----------~~peli~----k~~gEte-~~LR~~f~~a~k~~~psii~IdEld~ 289 (693)
T KOG0730|consen 229 TGKTFLVRAVANEYGAF----LFLI----------NGPELIS----KFPGETE-SNLRKAFAEALKFQVPSIIFIDELDA 289 (693)
T ss_pred CChHHHHHHHHHHhCce----eEec----------ccHHHHH----hcccchH-HHHHHHHHHHhccCCCeeEeHHhHhh
Confidence 59999999999987633 2221 1112221 1111111 11444455555666 88888898864
No 376
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=72.01 E-value=4.2 Score=33.73 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=12.3
Q ss_pred CCceEEEEEeCCCCc
Q 039644 66 SRMKVLIVFDDVTCF 80 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~ 80 (192)
.+++.|+++||+...
T Consensus 263 ~G~~Vll~~DslTr~ 277 (455)
T PRK07960 263 RGQHVLLIMDSLTRY 277 (455)
T ss_pred cCCCeEEEecchhHH
Confidence 478999999999643
No 377
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=71.93 E-value=2.8 Score=29.95 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=13.9
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||||++.+...+..
T Consensus 17 sGKTTLi~~li~~l~~ 32 (173)
T PRK10751 17 TGKTTLLKKLIPALCA 32 (173)
T ss_pred ChHHHHHHHHHHHHhh
Confidence 6999999999997654
No 378
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=71.87 E-value=7.9 Score=30.68 Aligned_cols=30 Identities=17% Similarity=0.008 Sum_probs=22.7
Q ss_pred chHHHHhhcCCceEEEEEeCCCCchhHHHh
Q 039644 57 YIDLNFRRLSRMKVLIVFDDVTCFSQLESL 86 (192)
Q Consensus 57 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l 86 (192)
....+...|+..+=.+|+..+.+.+.+..+
T Consensus 204 ~~~lv~~aLR~~PD~IivGEiRg~ea~~~l 233 (323)
T PRK13833 204 MARLLKSTMRLRPDRIIVGEVRDGAALTLL 233 (323)
T ss_pred HHHHHHHHhCCCCCEEEEeecCCHHHHHHH
Confidence 555667778888888999999887766544
No 379
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=71.80 E-value=3.1 Score=28.12 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+..+.
T Consensus 10 sGKst~a~~la~~~ 23 (147)
T cd02020 10 SGKSTVAKLLAKKL 23 (147)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999876
No 380
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=71.55 E-value=7.2 Score=30.57 Aligned_cols=81 Identities=17% Similarity=0.099 Sum_probs=41.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+|||||++.++..+.... .++.+....+......+...+ ..+-...... ....+.+...++..+=.+++|.+.+
T Consensus 155 sGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l----~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~gE~r~ 229 (308)
T TIGR02788 155 SGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL----FYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRG 229 (308)
T ss_pred CCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE----EecCCCCCcCccCHHHHHHHHhcCCCCeEEEeccCC
Confidence 599999999988664432 233333222211110000000 0000000111 2355566777788888899999998
Q ss_pred chhHHHh
Q 039644 80 FSQLESL 86 (192)
Q Consensus 80 ~~~~~~l 86 (192)
.+.++.+
T Consensus 230 ~e~~~~l 236 (308)
T TIGR02788 230 DEAFDFI 236 (308)
T ss_pred HHHHHHH
Confidence 7665543
No 381
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=71.48 E-value=11 Score=28.45 Aligned_cols=44 Identities=20% Similarity=0.058 Sum_probs=30.2
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEeeccccccCCCChHHHHHHHHHHHhcC
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLENVREESQRPGGLACLRQKLLSNILKD 51 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~ 51 (192)
+|||++|.+++..+..+ -..+.|++.- ....++...++....+-
T Consensus 30 ~GKT~~~l~ia~~~a~~~~~~vly~SlE-------m~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 30 VGKTAFALQIALNAALNGGYPVLYFSLE-------MSEEELAARLLARLSGV 74 (259)
T ss_dssp SSHHHHHHHHHHHHHHTTSSEEEEEESS-------S-HHHHHHHHHHHHHTS
T ss_pred CCchHHHHHHHHHHHHhcCCeEEEEcCC-------CCHHHHHHHHHHHhhcc
Confidence 69999999999976443 3667777621 35667777777776543
No 382
>PRK13949 shikimate kinase; Provisional
Probab=71.27 E-value=3.2 Score=29.43 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.++..+.
T Consensus 12 sGKstl~~~La~~l~ 26 (169)
T PRK13949 12 AGKTTLGKALARELG 26 (169)
T ss_pred CCHHHHHHHHHHHcC
Confidence 599999999999874
No 383
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=71.21 E-value=25 Score=26.79 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=24.9
Q ss_pred ceEEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecc
Q 039644 68 MKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRN 105 (192)
Q Consensus 68 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~ 105 (192)
.+=.+|.|.+-...+-..+..++ ..|.+++.|..-
T Consensus 218 ~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 218 SPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred CCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 46789999998887766665553 467777766643
No 384
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.75 E-value=60 Score=26.95 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
.||||.|-.++..++.
T Consensus 111 sGKTTt~~KLA~~lkk 126 (451)
T COG0541 111 SGKTTTAGKLAKYLKK 126 (451)
T ss_pred CChHhHHHHHHHHHHH
Confidence 5999999999997765
No 385
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=70.71 E-value=5.3 Score=24.43 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||++..++..+++
T Consensus 10 ~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 10 VGKTTLAANLAAALAK 25 (99)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999998764
No 386
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=70.67 E-value=3.1 Score=29.52 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++..+
T Consensus 14 sGKsTl~~~l~~~~ 27 (188)
T TIGR01360 14 SGKGTQCEKIVEKY 27 (188)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999864
No 387
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=70.57 E-value=15 Score=31.54 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=24.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHH
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLS 46 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~ 46 (192)
+|||+|+.++++.... +.++++- +++-. ....+++.++-+
T Consensus 238 ~GKTvl~~~iak~a~a--divVyvg-~GERg---~E~~e~l~ef~~ 277 (586)
T PRK04192 238 SGKTVTQHQLAKWADA--DIVIYVG-CGERG---NEMTEVLEEFPE 277 (586)
T ss_pred CCHHHHHHHHHhcCCC--CEEEEEE-cCcCh---HHHHHHHHHHHh
Confidence 6999999999886532 5667765 33311 345555555543
No 388
>PRK13973 thymidylate kinase; Provisional
Probab=70.31 E-value=11 Score=27.60 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=14.5
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+++.+++.+...
T Consensus 14 sGKtTq~~~l~~~l~~~ 30 (213)
T PRK13973 14 AGKSTQIRLLAERLRAA 30 (213)
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 69999999999987543
No 389
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=70.25 E-value=5.4 Score=29.51 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=18.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+||.+++......-..++|++
T Consensus 31 ~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 31 TGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CChHHHHHHHHHHHHhcCCeEEEEE
Confidence 5999999998875433445678887
No 390
>PRK13976 thymidylate kinase; Provisional
Probab=70.18 E-value=9.6 Score=28.07 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=15.1
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+++.+++.++..
T Consensus 11 sGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 11 SGKTTQSRLLAEYLSDI 27 (209)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 69999999999988765
No 391
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=70.10 E-value=3.2 Score=29.20 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+++.++...
T Consensus 6 sGKSTla~~la~~l 19 (163)
T PRK11545 6 SGKSAVASEVAHQL 19 (163)
T ss_pred CcHHHHHHHHHHHh
Confidence 69999999999987
No 392
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=69.95 E-value=3.4 Score=37.08 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=50.1
Q ss_pred CceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhhcCC---CceEecCCCCHHHHHHHHHHhh
Q 039644 67 RMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRNWGV---SKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~---~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
+++-|++||.+-.... -..+..++.. ..+++.+..|........... ..-+++......+-. .|....
T Consensus 685 T~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~-~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i-~Fl~kv 762 (843)
T COG0249 685 TERSLVILDEIGRGTSTYDGLAIAWAVLEYLHE-KIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEGGDI-TFLYKV 762 (843)
T ss_pred CCCcEEEEecccCCCCcchhHHHHHHHHHHHHh-ccCceEEEeccHHHHHHhhhcccccceeEEEEEEcCCce-EEEEEe
Confidence 4566999999964431 1122222322 258899999988776666522 122333321111111 122211
Q ss_pred cCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 039644 137 FKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCFL 171 (192)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 171 (192)
.+....+.++-.+++. .|+|-.+.-.|..+
T Consensus 763 ----~~G~a~~SyGi~VAkl-aGlP~~Vi~rA~~i 792 (843)
T COG0249 763 ----KPGIADKSYGIHVAKL-AGLPEEVIERAREI 792 (843)
T ss_pred ----ccCCCCccHHHHHHHH-hCCCHHHHHHHHHH
Confidence 1122334455555554 58888877777543
No 393
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=69.95 E-value=3.9 Score=32.93 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=15.9
Q ss_pred CchhHHHHHHHHHhhCCCc
Q 039644 1 IGKTAIARAIFDKISGDFE 19 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~ 19 (192)
+|||||+..+...++.+|.
T Consensus 16 sGKTTl~~~l~~~l~~~~~ 34 (369)
T PRK14490 16 SGKTTLITALVRRLSERFS 34 (369)
T ss_pred CCHHHHHHHHHHHHhhCce
Confidence 6999999999998876643
No 394
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=69.88 E-value=3.6 Score=28.14 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++..+
T Consensus 10 sGKstla~~la~~l 23 (154)
T cd00464 10 AGKTTVGRLLAKAL 23 (154)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999876
No 395
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=69.61 E-value=12 Score=26.83 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+++.+.+.+..
T Consensus 14 sGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 14 AGKTTQANLLKKLLQE 29 (195)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999997654
No 396
>PRK13948 shikimate kinase; Provisional
Probab=69.48 E-value=3.5 Score=29.68 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.+++.+.
T Consensus 21 sGKSTvg~~La~~lg 35 (182)
T PRK13948 21 TGKSRIGWELSRALM 35 (182)
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999999874
No 397
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=69.15 E-value=26 Score=29.04 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=39.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhc--------CCCC--cC------chHHHHhh
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILK--------DKNV--MP------YIDLNFRR 64 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~--~~------~~~~l~~~ 64 (192)
+|||+|+.+++++... +.+++.- +++.. ....++...+...-.- ..++ .. ..-.+.++
T Consensus 151 vgk~~L~~~ia~~~~~--~v~Vfa~-iGeR~---rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAEy 224 (436)
T PRK02118 151 EPYNALLARIALQAEA--DIIILGG-MGLTF---DDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEK 224 (436)
T ss_pred CCHHHHHHHHHHhhCC--CeEEEEE-eccch---hHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5999999999887654 3345554 43321 3445555544333110 0011 00 22223344
Q ss_pred c---CCceEEEEEeCCCCc
Q 039644 65 L---SRMKVLIVFDDVTCF 80 (192)
Q Consensus 65 l---~~~~~LlVlDdv~~~ 80 (192)
+ .+++.|+++||+..-
T Consensus 225 frd~g~~~VLli~DdlTr~ 243 (436)
T PRK02118 225 FALEGKKKVLVLLTDMTNF 243 (436)
T ss_pred HHhcCCCCEEEeccCchHH
Confidence 4 348999999999643
No 398
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=69.11 E-value=8.3 Score=30.14 Aligned_cols=30 Identities=20% Similarity=0.053 Sum_probs=21.8
Q ss_pred chHHHHhhcCCceEEEEEeCCCCchhHHHh
Q 039644 57 YIDLNFRRLSRMKVLIVFDDVTCFSQLESL 86 (192)
Q Consensus 57 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l 86 (192)
..+.++..|+..+=.||+..+.+.+.+..+
T Consensus 193 ~~~~l~~aLR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 193 MTRLLKATLRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred HHHHHHHHhcCCCCEEEEeccCCHHHHHHH
Confidence 455667777777778889999887666543
No 399
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.96 E-value=26 Score=28.48 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHhhCCC--cceEEEe
Q 039644 1 IGKTAIARAIFDKISGDF--ECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F--~~~~wv~ 25 (192)
+||||++..++.+....+ ..+..+.
T Consensus 148 vGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 148 VGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 699999999999754443 2344443
No 400
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=68.88 E-value=60 Score=26.20 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=67.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeecccccc-CCCChHHHHHHHHHHHhcCCCC----cCchHHHHhhcC------Cce
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQ-RPGGLACLRQKLLSNILKDKNV----MPYIDLNFRRLS------RMK 69 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~l~------~~~ 69 (192)
.|||.|......+ .+.|.-...+.-....-+ +...+..+..++..++...... .+....+...|. ..+
T Consensus 60 sgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ 138 (408)
T KOG2228|consen 60 SGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGK 138 (408)
T ss_pred CCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCce
Confidence 5999988777666 333332222221222100 0013333333333333222111 113444554553 236
Q ss_pred EEEEEeCCCCch------hHHHhhccCC-CCCCCceEEEEecchhHHh-------hcCCCceEecCCCCHHHHHHHHHHh
Q 039644 70 VLIVFDDVTCFS------QLESLMGSLD-WLTPVSRIILTTRNKQVLR-------NWGVSKIYEMEALEYHHALELFSQH 135 (192)
Q Consensus 70 ~LlVlDdv~~~~------~~~~l~~~~~-~~~~~~~iivTtR~~~~~~-------~~~~~~~~~l~~l~~~ea~~lf~~~ 135 (192)
..+|+|.++--. .+..+.+.-. ...+-|-|-+|||...... .++-..++-++.++-++...++++.
T Consensus 139 ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 139 VIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred EEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 899998886321 1233332222 2346677888999744322 2222335557778888888888876
Q ss_pred h
Q 039644 136 A 136 (192)
Q Consensus 136 ~ 136 (192)
.
T Consensus 219 l 219 (408)
T KOG2228|consen 219 L 219 (408)
T ss_pred h
Confidence 5
No 401
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=68.79 E-value=5.5 Score=34.62 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=28.6
Q ss_pred CchhHHHHHHHHHhh-CCCcceEEEeeccccccCCCChHHHHHHHHHHH
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCFLENVREESQRPGGLACLRQKLLSNI 48 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~ 48 (192)
+||||+|+.+++.+. ..++..+|+.+.. ....++++.+....
T Consensus 61 ~GKttla~~l~~~l~~~~~~~~~~~~np~------~~~~~~~~~v~~~~ 103 (637)
T PRK13765 61 TGKSMLAKAMAELLPKEELQDILVYPNPE------DPNNPKIRTVPAGK 103 (637)
T ss_pred CcHHHHHHHHHHHcChHhHHHheEeeCCC------cchHHHHHHHHHhc
Confidence 699999999999753 3457888987532 34555555555433
No 402
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.70 E-value=51 Score=29.64 Aligned_cols=23 Identities=22% Similarity=0.119 Sum_probs=19.4
Q ss_pred CceEecCCCCHHHHHHHHHHhhc
Q 039644 115 SKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 115 ~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
-+.+.++.++.++-.++|+.+..
T Consensus 555 ~~ei~~~~lse~qRl~iLq~y~~ 577 (953)
T KOG0736|consen 555 LHEIEVPALSEEQRLEILQWYLN 577 (953)
T ss_pred hhhccCCCCCHHHHHHHHHHHHh
Confidence 35688999999999999998874
No 403
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=68.46 E-value=5.2 Score=30.91 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
|||||+++.+.......
T Consensus 5 vGKTT~~~~l~~~~~~~ 21 (281)
T PF00693_consen 5 VGKTTTLKALAEALPAG 21 (281)
T ss_dssp SSHHHHHHHHHHCCTSS
T ss_pred cCHHHHHHHHHHccCCC
Confidence 79999999999966433
No 404
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=68.37 E-value=45 Score=28.34 Aligned_cols=14 Identities=43% Similarity=0.396 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||++|+.+....
T Consensus 230 tGK~~lA~~ih~~s 243 (534)
T TIGR01817 230 TGKELIAKAIHYLS 243 (534)
T ss_pred ccHHHHHHHHHHhC
Confidence 59999999998854
No 405
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=68.36 E-value=14 Score=27.64 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+||.++....-..-..++|++
T Consensus 32 sGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 32 TGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 5999999998876434456778887
No 406
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=68.30 E-value=20 Score=29.71 Aligned_cols=73 Identities=22% Similarity=0.132 Sum_probs=44.8
Q ss_pred CchhHHHHHHHHHhhCCCcc-eEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC----------chHHHHhhcCCc
Q 039644 1 IGKTAIARAIFDKISGDFEC-SCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP----------YIDLNFRRLSRM 68 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~----------~~~~l~~~l~~~ 68 (192)
+|||++|..++..+..+++. +.+++. . .....+...++.....-... .. .+......+.+.
T Consensus 207 mGKTafalnia~n~a~~~~~~v~iFSL------E-M~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~ 279 (435)
T COG0305 207 MGKTALALNIALNAAADGRKPVAIFSL------E-MSEEQLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEA 279 (435)
T ss_pred CChHHHHHHHHHHHHHhcCCCeEEEEc------c-CCHHHHHHHhhccccccchhccccccccHHHHHHHHHHHHHHhhC
Confidence 69999999999987666654 566642 1 46667777777666543322 11 333344445556
Q ss_pred eEEEEEeCCCCchh
Q 039644 69 KVLIVFDDVTCFSQ 82 (192)
Q Consensus 69 ~~LlVlDdv~~~~~ 82 (192)
+ |-+||......
T Consensus 280 ~--i~IdD~~~~si 291 (435)
T COG0305 280 P--IFIDDTPGLTI 291 (435)
T ss_pred C--eeecCCCcCCH
Confidence 6 77788775543
No 407
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=68.26 E-value=8.6 Score=27.33 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=22.0
Q ss_pred CchhHHHHHHHHHhh-CCCcceEEEeecccc
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCFLENVREE 30 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~wv~~~~~~ 30 (192)
+|||.||+.+++.+. ......+-++ ++..
T Consensus 14 vGKT~la~~la~~l~~~~~~~~~~~d-~s~~ 43 (171)
T PF07724_consen 14 VGKTELAKALAELLFVGSERPLIRID-MSEY 43 (171)
T ss_dssp SSHHHHHHHHHHHHT-SSCCEEEEEE-GGGH
T ss_pred CCHHHHHHHHHHHhccCCccchHHHh-hhcc
Confidence 699999999999887 5666666665 5553
No 408
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=68.09 E-value=6.2 Score=27.73 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.7
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+|||||+..+...+...
T Consensus 12 sGKTTli~~L~~~l~~~ 28 (159)
T cd03116 12 SGKTTLLEKLIPALSAR 28 (159)
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 69999999999987654
No 409
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=68.00 E-value=3.8 Score=29.06 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.++....
T Consensus 15 aGKStl~~~La~~l~ 29 (172)
T PRK05057 15 AGKSTIGRQLAQQLN 29 (172)
T ss_pred cCHHHHHHHHHHHcC
Confidence 599999999998753
No 410
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=67.94 E-value=4.3 Score=28.99 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.4
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+||||+.+.+++.+.-+|
T Consensus 13 aGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 13 AGKSTIGRALAKALNLPF 30 (172)
T ss_pred CCHhHHHHHHHHHcCCCc
Confidence 599999999999876665
No 411
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=67.81 E-value=3.7 Score=29.09 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++..+.
T Consensus 12 sGKttl~~~l~~~~~ 26 (179)
T TIGR02322 12 AGKDTLLDYARARLA 26 (179)
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999988754
No 412
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=67.81 E-value=3.8 Score=28.47 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=11.7
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
.|||||++.+++-
T Consensus 36 AGKTtf~rgi~~~ 48 (149)
T COG0802 36 AGKTTLVRGIAKG 48 (149)
T ss_pred CChHHHHHHHHHH
Confidence 5999999999984
No 413
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=67.71 E-value=6.2 Score=27.55 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=18.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFL 24 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv 24 (192)
+|||+++..++..++++...+..+
T Consensus 9 ~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 9 VGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred ccHHHHHHHHHHHHHHCCCcEEEE
Confidence 699999999999887765544443
No 414
>PRK06761 hypothetical protein; Provisional
Probab=67.70 E-value=6.2 Score=30.62 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.5
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+++.+++.+...
T Consensus 14 sGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 14 FGKSTTAKMLNDILSQN 30 (282)
T ss_pred CCHHHHHHHHHHhcCcC
Confidence 69999999999987544
No 415
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=67.69 E-value=11 Score=29.32 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=38.4
Q ss_pred CceEEEEEeCCCCc--hh----HHHhhccCCCCCCCceEEEEecchhHHhhcC-------------------CCceEecC
Q 039644 67 RMKVLIVFDDVTCF--SQ----LESLMGSLDWLTPVSRIILTTRNKQVLRNWG-------------------VSKIYEME 121 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~----~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~-------------------~~~~~~l~ 121 (192)
++|.++++||++.. +. ++.+...+ + .++..+|+..-.+.+..... .+-++.++
T Consensus 171 ~~~iViiIDdLDR~~~~~i~~~l~~ik~~~-~-~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP 248 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEEIVELLEAIKLLL-D-FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLP 248 (325)
T ss_pred CceEEEEEcchhcCCcHHHHHHHHHHHHhc-C-CCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeC
Confidence 36899999999853 22 33333222 1 25666666654444433221 13457788
Q ss_pred CCCHHHHHHHHHHh
Q 039644 122 ALEYHHALELFSQH 135 (192)
Q Consensus 122 ~l~~~ea~~lf~~~ 135 (192)
+.+..+-..+|...
T Consensus 249 ~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 249 PPSPSDLERYLNEL 262 (325)
T ss_pred CCCHHHHHHHHHHH
Confidence 88877766665554
No 416
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=67.68 E-value=3.9 Score=29.32 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=38.7
Q ss_pred CchhHHHHHHHHHh-hCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcC--chHHHHhhcC--CceEEEEEe
Q 039644 1 IGKTAIARAIFDKI-SGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMP--YIDLNFRRLS--RMKVLIVFD 75 (192)
Q Consensus 1 iGKTtLa~~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~l~--~~~~LlVlD 75 (192)
+||||+|+.+++++ -.|.+...|+...- ....++...+-..+....--.+ ....+...+. +.+-.+|+|
T Consensus 11 aGK~T~A~~La~~~~i~hlstgd~~r~~~------~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~I~d 84 (178)
T COG0563 11 AGKSTLAKKLAKKLGLPHLDTGDILRAAI------AERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGFILD 84 (178)
T ss_pred CCHHHHHHHHHHHhCCcEEcHhHHhHhhh------ccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeEEEe
Confidence 59999999999984 23444333332111 1113333333333333321122 2233333332 222288999
Q ss_pred CCCCc-hhHHHhh
Q 039644 76 DVTCF-SQLESLM 87 (192)
Q Consensus 76 dv~~~-~~~~~l~ 87 (192)
+.-.. .+++.+.
T Consensus 85 g~PR~~~qa~~l~ 97 (178)
T COG0563 85 GFPRTLCQARALK 97 (178)
T ss_pred CCCCcHHHHHHHH
Confidence 98644 4444443
No 417
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=67.43 E-value=6.3 Score=28.00 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+..+-..++-++
T Consensus 10 ~GKTt~a~~la~~la~~g~~VlliD 34 (195)
T PF01656_consen 10 VGKTTIAANLAQALARKGKKVLLID 34 (195)
T ss_dssp SSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred ccHHHHHHHHHhccccccccccccc
Confidence 6999999999998766544555555
No 418
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=67.42 E-value=15 Score=27.27 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+||.+++.....+=..++|++
T Consensus 36 sGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 36 TGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CChHHHHHHHHHHHHhCCCEEEEEE
Confidence 6999999999775333345678886
No 419
>PRK07933 thymidylate kinase; Validated
Probab=67.01 E-value=4.2 Score=30.03 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=14.7
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+++.+++.+...
T Consensus 11 sGKST~~~~L~~~L~~~ 27 (213)
T PRK07933 11 AGKRTLTEALRAALEAR 27 (213)
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 69999999999987654
No 420
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=66.95 E-value=9.3 Score=27.78 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=30.1
Q ss_pred HHHHhhcCCceE-EEEEeCCCCc-----hhHHHhhccCCCCCCCceEEEEecchh
Q 039644 59 DLNFRRLSRMKV-LIVFDDVTCF-----SQLESLMGSLDWLTPVSRIILTTRNKQ 107 (192)
Q Consensus 59 ~~l~~~l~~~~~-LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~iivTtR~~~ 107 (192)
+.....+.+.+| |+|||.+.-. -.++.+...+......++||+|-|.-.
T Consensus 112 ~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap 166 (198)
T COG2109 112 EHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAP 166 (198)
T ss_pred HHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCC
Confidence 334445555555 9999999522 224444444444456789999998743
No 421
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=66.85 E-value=3.5 Score=28.47 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||++.+-..
T Consensus 12 ~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 12 SGKTTLAQALNGE 24 (143)
T ss_pred CCHHHHHHHHcCC
Confidence 6999999999873
No 422
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=66.75 E-value=23 Score=30.43 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=23.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHH
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKL 44 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l 44 (192)
+|||+|..++++... -+.++++- +++-. .-+.+++.++
T Consensus 237 ~GKT~l~~~lak~s~--aDviVyvg-~GERG---~Em~evle~f 274 (591)
T TIGR01042 237 CGKTVISQSLSKYSN--SDAIVYVG-CGERG---NEMAEVLMDF 274 (591)
T ss_pred cCHHHHHHHHHhccC--cCEEEEEE-Eeech---HHHHHHHHHh
Confidence 699999999877433 35667765 32211 3455555554
No 423
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=66.71 E-value=17 Score=27.06 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=17.9
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEe
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~ 25 (192)
+|||+++.+++...... =..++|++
T Consensus 24 ~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 24 MGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 59999999998864332 34567775
No 424
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=66.63 E-value=4.2 Score=28.82 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++++.
T Consensus 10 sGKst~a~~la~~~ 23 (183)
T TIGR01359 10 SGKGTQCAKIVENF 23 (183)
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999999876
No 425
>PRK04182 cytidylate kinase; Provisional
Probab=66.57 E-value=4.3 Score=28.52 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.++.++.
T Consensus 11 sGKstia~~la~~lg 25 (180)
T PRK04182 11 SGKTTVARLLAEKLG 25 (180)
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999998763
No 426
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=66.55 E-value=11 Score=32.66 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=19.4
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEeec
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLENV 27 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~~~ 27 (192)
+|||++|+.+++.+... |...+++.+.
T Consensus 48 ~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 48 VGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred CCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 69999999999987543 4445555533
No 427
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=66.46 E-value=7.7 Score=26.25 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=20.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+++..+.+.++++...+.++.
T Consensus 10 ~Gkt~~~~~l~~~l~~~~~~v~~~k 34 (134)
T cd03109 10 IGKTVATAILARALKEKGYRVAPLK 34 (134)
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6999999999999887776666665
No 428
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=66.24 E-value=4.7 Score=29.82 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.+..++.
T Consensus 10 sGKSTl~~~L~~~l~ 24 (219)
T cd02030 10 SGKGKLAKELAEKLG 24 (219)
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998764
No 429
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=66.20 E-value=7.5 Score=29.63 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=18.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEee
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~ 26 (192)
+|||+||.+++......=..+++++.
T Consensus 47 tGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 47 TGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 69999999998764333456777873
No 430
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=66.16 E-value=63 Score=25.43 Aligned_cols=156 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC--------chHHHHhhcCCceEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP--------YIDLNFRRLSRMKVL 71 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~--------~~~~l~~~l~~~~~L 71 (192)
.||||||.-+++++..+ ++.++.....-.--+..++..+...+-. ++ .-+.+--.+.+-+.=
T Consensus 63 lGKTTLA~IIA~Emgvn---------~k~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lD 133 (332)
T COG2255 63 LGKTTLAHIIANELGVN---------LKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLD 133 (332)
T ss_pred CcHHHHHHHHHHHhcCC---------eEecccccccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEE
Q ss_pred EEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHhhc--CCCceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHH
Q 039644 72 IVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNW--GVSKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKL 149 (192)
Q Consensus 72 lVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~--~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~ 149 (192)
+++.-=.+-.-..-=.+.+.- |=-|||.=.+..+. ...-+.+++--+.+|..++..+.+..-. -+..++.
T Consensus 134 I~IG~gp~Arsv~ldLppFTL------IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~ 205 (332)
T COG2255 134 IIIGKGPAARSIRLDLPPFTL------IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEA 205 (332)
T ss_pred EEEccCCccceEeccCCCeeE------eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHH
Q ss_pred HHHHHHHhCCCchHHHHHHHHhcc
Q 039644 150 SSNVTKYAQGIPLALKVLSCFLHK 173 (192)
Q Consensus 150 ~~~i~~~~~g~Plai~~~~~~l~~ 173 (192)
+.+|.++..|-|.-..-+....+.
T Consensus 206 a~eIA~rSRGTPRIAnRLLrRVRD 229 (332)
T COG2255 206 ALEIARRSRGTPRIANRLLRRVRD 229 (332)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHH
No 431
>PRK13695 putative NTPase; Provisional
Probab=66.13 E-value=6.7 Score=27.69 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||+..++..+.
T Consensus 11 ~GKTTll~~i~~~l~ 25 (174)
T PRK13695 11 VGKTTLVLKIAELLK 25 (174)
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999988754
No 432
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=65.61 E-value=8.8 Score=30.88 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=22.2
Q ss_pred chHHHHhhcCCceEEEEEeCCCCchhHHHh
Q 039644 57 YIDLNFRRLSRMKVLIVFDDVTCFSQLESL 86 (192)
Q Consensus 57 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l 86 (192)
....++..++..+-.+++..+.+.+.....
T Consensus 201 ~~~~l~~aLR~~Pd~i~vGEiRd~et~~~a 230 (358)
T TIGR02524 201 FAAGVRNALRRKPHAILVGEARDAETISAA 230 (358)
T ss_pred HHHHHHHHhccCCCEEeeeeeCCHHHHHHH
Confidence 455567778888889999988877665433
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=65.58 E-value=7.7 Score=29.00 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=16.6
Q ss_pred CchhHHHHHHHHHh-hCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKI-SGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~-~~~F~~~~wv~ 25 (192)
+||||||.+++... +.. ...++++
T Consensus 35 ~GKTtl~~~~~~~~~~~g-~~~~yi~ 59 (230)
T PRK08533 35 TGKSILSQRLAYGFLQNG-YSVSYVS 59 (230)
T ss_pred CCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 59999998887754 333 4456665
No 434
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=65.58 E-value=4.3 Score=31.43 Aligned_cols=14 Identities=36% Similarity=0.340 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+++..+.
T Consensus 13 SGKSTla~~L~~~~ 26 (300)
T PHA02530 13 SGKSTWAREFAAKN 26 (300)
T ss_pred CCHHHHHHHHHHHC
Confidence 69999999998875
No 435
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=65.51 E-value=5.3 Score=30.23 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=32.0
Q ss_pred HHHhhcCCceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
.+.+.+.-++=+||+|..-+.-+ |+-+...-. ..+--+|+.|.+..+...+
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~--~~~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK--ERGLTYLFISHDLALVEHM 208 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH--hcCceEEEEeCcHHHHHHH
Confidence 36667777899999999865322 444332211 2344588888887766655
No 436
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=65.48 E-value=4.8 Score=28.23 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.2
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+++++.
T Consensus 13 sGKst~~~~la~~lg 27 (171)
T PRK03731 13 CGKTTVGMALAQALG 27 (171)
T ss_pred CCHHHHHHHHHHHhC
Confidence 599999999999863
No 437
>PRK13946 shikimate kinase; Provisional
Probab=65.47 E-value=4.9 Score=28.78 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.+++++.
T Consensus 21 sGKsti~~~LA~~Lg 35 (184)
T PRK13946 21 AGKSTVGRRLATMLG 35 (184)
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999999873
No 438
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=65.37 E-value=27 Score=30.74 Aligned_cols=14 Identities=50% Similarity=0.563 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||.+|+.+...-
T Consensus 410 TGK~~lA~~ih~~s 423 (686)
T PRK15429 410 TGKELIARAIHNLS 423 (686)
T ss_pred cCHHHHHHHHHHhc
Confidence 69999999998854
No 439
>PLN02924 thymidylate kinase
Probab=65.32 E-value=16 Score=27.20 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=14.6
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+++.+++.+...
T Consensus 27 sGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 27 SGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 69999999999987654
No 440
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=65.31 E-value=18 Score=30.02 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=12.2
Q ss_pred CCceEEEEEeCCCCc
Q 039644 66 SRMKVLIVFDDVTCF 80 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~ 80 (192)
.+++.|+++||+...
T Consensus 243 ~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 243 KGHDVLLLVDSLTRY 257 (434)
T ss_pred ccCCEEEeecchhHH
Confidence 468999999999543
No 441
>CHL00206 ycf2 Ycf2; Provisional
Probab=64.90 E-value=64 Score=32.37 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+|||.||++++......
T Consensus 1641 TGKTlLAKALA~es~VP 1657 (2281)
T CHL00206 1641 TGRSYLVKYLATNSYVP 1657 (2281)
T ss_pred CCHHHHHHHHHHhcCCc
Confidence 69999999999975433
No 442
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=64.87 E-value=7.9 Score=28.61 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=26.5
Q ss_pred CceEEEEEeCC---CCchh----HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 67 RMKVLIVFDDV---TCFSQ----LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 67 ~~~~LlVlDdv---~~~~~----~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
.++-|++||.. .+..+ ...+...+.. ..++.+|++|.........
T Consensus 108 ~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~-~~~~~vi~~TH~~~l~~l~ 159 (216)
T cd03284 108 TERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHE-KIGAKTLFATHYHELTELE 159 (216)
T ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-ccCCcEEEEeCcHHHHHHh
Confidence 57889999998 33222 1223333322 1356789999887655443
No 443
>PRK00698 tmk thymidylate kinase; Validated
Probab=64.77 E-value=16 Score=26.26 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=13.6
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+++.+.+.+..
T Consensus 14 sGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 14 AGKSTQIELLKELLEQ 29 (205)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999997643
No 444
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=64.68 E-value=23 Score=29.37 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+|..++..++..
T Consensus 106 sGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 106 SGKTTTAAKLARYFKKK 122 (437)
T ss_pred CcHHHHHHHHHHHHHHc
Confidence 69999999999876544
No 445
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=64.51 E-value=4.9 Score=29.90 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=13.9
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+|||||++.++..++..
T Consensus 44 sGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 44 AGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCHHHHHHHHHHHhhhc
Confidence 59999999999876543
No 446
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=63.76 E-value=70 Score=28.51 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEE
Q 039644 69 KVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILT 102 (192)
Q Consensus 69 ~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivT 102 (192)
.-+||+|.+.-.+ .+..+...++ .++++|+.
T Consensus 417 ~~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilv 449 (720)
T TIGR01448 417 CDLLIVDESSMMDTWLALSLLAALP---DHARLLLV 449 (720)
T ss_pred CCEEEEeccccCCHHHHHHHHHhCC---CCCEEEEE
Confidence 3489999997543 3556655544 45666664
No 447
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=63.73 E-value=16 Score=24.14 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=17.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+++..++..+.+.-..+.-++
T Consensus 10 ~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 10 VGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6999999999998765433344443
No 448
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=63.56 E-value=17 Score=29.45 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=43.7
Q ss_pred CchhHHHHHHHHHhhCCCc-ceEE-EeeccccccCCCChHHHHHHHHHHHhcCCCC-cCchHHHHhhcCCceEEEEEeCC
Q 039644 1 IGKTAIARAIFDKISGDFE-CSCF-LENVREESQRPGGLACLRQKLLSNILKDKNV-MPYIDLNFRRLSRMKVLIVFDDV 77 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~-~~~w-v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~LlVlDdv 77 (192)
+||||++..+...+.+..+ ..+. +....+.... ....+......++. .+ ......++..++..+=.|+++.+
T Consensus 160 SGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~--~~~~~~~~~q~evg---~~~~~~~~~l~~aLR~~PD~I~vGEi 234 (372)
T TIGR02525 160 SGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG--SPDDLLPPAQSQIG---RDVDSFANGIRLALRRAPKIIGVGEI 234 (372)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC--CCceeecccccccC---CCccCHHHHHHHhhccCCCEEeeCCC
Confidence 6999999999887654432 2233 3211111000 00000000000111 11 12456677888888999999999
Q ss_pred CCchhHHHhh
Q 039644 78 TCFSQLESLM 87 (192)
Q Consensus 78 ~~~~~~~~l~ 87 (192)
.+.+.++...
T Consensus 235 Rd~et~~~al 244 (372)
T TIGR02525 235 RDLETFQAAV 244 (372)
T ss_pred CCHHHHHHHH
Confidence 9887766543
No 449
>PRK14530 adenylate kinase; Provisional
Probab=63.48 E-value=5.3 Score=29.37 Aligned_cols=14 Identities=14% Similarity=0.302 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++..+
T Consensus 14 sGKsT~~~~La~~~ 27 (215)
T PRK14530 14 AGKGTQSSNLAEEF 27 (215)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999876
No 450
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=63.43 E-value=4.9 Score=27.38 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||+..+..
T Consensus 12 vGKTsl~~~~~~ 23 (162)
T cd04138 12 VGKSALTIQLIQ 23 (162)
T ss_pred CCHHHHHHHHHh
Confidence 699999999987
No 451
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=63.41 E-value=9.1 Score=26.76 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+..+-..++-++
T Consensus 11 ~GKtt~a~~la~~l~~~g~~vllvD 35 (179)
T cd02036 11 VGKTTTTANLGTALAQLGYKVVLID 35 (179)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 6999999999998765544445554
No 452
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=63.40 E-value=4.4 Score=28.67 Aligned_cols=14 Identities=21% Similarity=0.665 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||++.++...
T Consensus 12 sGKsTl~~~L~~~~ 25 (180)
T TIGR03263 12 VGKSTLVKALLEED 25 (180)
T ss_pred CCHHHHHHHHHccC
Confidence 69999999999854
No 453
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=63.13 E-value=8.5 Score=28.60 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=26.1
Q ss_pred CceEEEEEeCC---CCchhH----HHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 67 RMKVLIVFDDV---TCFSQL----ESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 67 ~~~~LlVlDdv---~~~~~~----~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
..+-|++||.. .+..+- ..+...+.. ..++.+|++|....+...+
T Consensus 108 ~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~ 159 (222)
T cd03285 108 TENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALA 159 (222)
T ss_pred CCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHh
Confidence 56889999999 333221 111122222 2367799999876665544
No 454
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=63.12 E-value=5.4 Score=28.62 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=11.8
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+||||+++.+.++
T Consensus 10 sGKSTl~~~L~~~ 22 (193)
T cd01673 10 AGKSTLAKELAEH 22 (193)
T ss_pred CCHHHHHHHHHHH
Confidence 6999999999986
No 455
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=62.94 E-value=5.5 Score=28.28 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+++.+.
T Consensus 11 sG~TTva~~lAe~~g 25 (179)
T COG1102 11 SGKTTVARELAEHLG 25 (179)
T ss_pred CChhHHHHHHHHHhC
Confidence 699999999999763
No 456
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=62.82 E-value=8 Score=30.12 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=16.4
Q ss_pred CchhHHHHHHHHHhhCCCcc
Q 039644 1 IGKTAIARAIFDKISGDFEC 20 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~ 20 (192)
+|||||...+...+...+..
T Consensus 115 sGKTTLl~~l~~~l~~~~~~ 134 (290)
T PRK10463 115 SGKTTLLTETLMRLKDSVPC 134 (290)
T ss_pred CCHHHHHHHHHHHhccCCCE
Confidence 59999999999988766543
No 457
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=62.59 E-value=7.8 Score=31.18 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||||..+++.+..
T Consensus 89 sGKStla~~La~~l~~ 104 (361)
T smart00763 89 GGKSSLVECLKRGLEE 104 (361)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 6999999999996544
No 458
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=62.54 E-value=5.2 Score=27.50 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||+..+..
T Consensus 11 ~GKTsli~~~~~ 22 (164)
T smart00173 11 VGKSALTIQFVQ 22 (164)
T ss_pred CCHHHHHHHHHh
Confidence 699999999987
No 459
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=62.51 E-value=5.5 Score=27.94 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHH-hhCCC
Q 039644 1 IGKTAIARAIFDK-ISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~-~~~~F 18 (192)
+|||+|++.+... +...|
T Consensus 11 vGKTsli~~~~~~~f~~~~ 29 (170)
T cd04108 11 VGKTCLINRFCKDVFDKNY 29 (170)
T ss_pred CCHHHHHHHHhcCCCCCCC
Confidence 6999999999884 44444
No 460
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=62.34 E-value=5.1 Score=27.46 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||+..++.+
T Consensus 11 vGKTsli~~l~~~ 23 (168)
T cd04119 11 VGKSCIIKRYCEG 23 (168)
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999873
No 461
>PRK14532 adenylate kinase; Provisional
Probab=62.09 E-value=5.7 Score=28.39 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++++.
T Consensus 11 sGKsT~a~~la~~~ 24 (188)
T PRK14532 11 AGKGTQAKRLVEER 24 (188)
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999998765
No 462
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=61.93 E-value=12 Score=29.65 Aligned_cols=30 Identities=20% Similarity=0.065 Sum_probs=22.1
Q ss_pred chHHHHhhcCCceEEEEEeCCCCchhHHHh
Q 039644 57 YIDLNFRRLSRMKVLIVFDDVTCFSQLESL 86 (192)
Q Consensus 57 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l 86 (192)
....+...|+..+=.||+..+.+.+.+..+
T Consensus 208 ~~~ll~~aLR~~PD~IivGEiR~~Ea~~~l 237 (319)
T PRK13894 208 MTALLKTTLRMRPDRILVGEVRGPEALDLL 237 (319)
T ss_pred HHHHHHHHhcCCCCEEEEeccCCHHHHHHH
Confidence 555667777777778999999988766543
No 463
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=61.63 E-value=4.5 Score=28.96 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++....
T Consensus 13 sGKsTl~~~l~~~~~ 27 (186)
T PRK10078 13 SGKDSLLAALRQREQ 27 (186)
T ss_pred CCHHHHHHHHhccCC
Confidence 699999999987643
No 464
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=61.52 E-value=7.3 Score=28.47 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=14.1
Q ss_pred CchhHHHHHHHH-HhhCCCc
Q 039644 1 IGKTAIARAIFD-KISGDFE 19 (192)
Q Consensus 1 iGKTtLa~~~~~-~~~~~F~ 19 (192)
+|||+|+..+.. .+...+.
T Consensus 11 VGKTSli~r~~~~~f~~~~~ 30 (202)
T cd04120 11 VGKTSLMRRFTDDTFCEACK 30 (202)
T ss_pred CCHHHHHHHHHhCCCCCcCC
Confidence 699999999987 3444443
No 465
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=61.38 E-value=6 Score=28.24 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++.+.
T Consensus 10 sGKst~a~~La~~~ 23 (194)
T cd01428 10 SGKGTQAERLAKKY 23 (194)
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999999874
No 466
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=61.30 E-value=14 Score=27.22 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEe
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~ 25 (192)
+|||+|+.+++..-..+ =..++|++
T Consensus 30 sGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 30 SGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp SSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 59999999988754333 35678887
No 467
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=60.92 E-value=5 Score=26.86 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||++.++..
T Consensus 7 sGKstl~~~l~~~ 19 (163)
T cd00880 7 AGKSSLLNALLGQ 19 (163)
T ss_pred CCHHHHHHHHhCc
Confidence 6999999999874
No 468
>PHA02518 ParA-like protein; Provisional
Probab=60.54 E-value=11 Score=27.27 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=17.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+...=..++-++
T Consensus 12 vGKTT~a~~la~~la~~g~~vlliD 36 (211)
T PHA02518 12 AGKTTVATNLASWLHADGHKVLLVD 36 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 6999999999987654433444454
No 469
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=60.27 E-value=5.9 Score=27.10 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=10.7
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||+..+..
T Consensus 12 vGKTsl~~~~~~ 23 (163)
T cd04136 12 VGKSALTVQFVQ 23 (163)
T ss_pred CCHHHHHHHHHh
Confidence 699999999886
No 470
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=60.07 E-value=6.6 Score=27.33 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+.+++
T Consensus 11 SGKstia~~la~~l 24 (171)
T TIGR02173 11 SGKTTVAKILAEKL 24 (171)
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999998875
No 471
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.97 E-value=27 Score=31.03 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||||.-++++.
T Consensus 337 lGKTTLAHViAkqa 350 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQA 350 (877)
T ss_pred CChhHHHHHHHHhc
Confidence 59999999999863
No 472
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=59.74 E-value=29 Score=28.19 Aligned_cols=45 Identities=20% Similarity=0.094 Sum_probs=26.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHH
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSN 47 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~ 47 (192)
.|||+||..+++.+....+.+.-. .++.+.....-.+.+.+.++.
T Consensus 61 tGKTAlA~~ia~eLG~~~PF~~is--gSEiyS~e~kKTE~L~qa~Rr 105 (398)
T PF06068_consen 61 TGKTALAMAIAKELGEDVPFVSIS--GSEIYSSEVKKTEALTQAFRR 105 (398)
T ss_dssp SSHHHHHHHHHHHCTTTS-EEEEE--GGGG-BTTC-HHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhCCCCCeeEcc--cceeeecccCchHHHHHHHHH
Confidence 599999999999987665553333 444433324555555454444
No 473
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=59.74 E-value=6.2 Score=27.27 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=10.7
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||+..+..
T Consensus 11 vGKTsli~~~~~ 22 (161)
T cd04124 11 VGKSKLVERFLM 22 (161)
T ss_pred CCHHHHHHHHHh
Confidence 699999998876
No 474
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=59.69 E-value=6.6 Score=29.46 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=14.8
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+|||||+..++..++.+
T Consensus 12 sGKTtl~~~l~~~L~~~ 28 (229)
T PRK14494 12 SGKTTLIEKILKNLKER 28 (229)
T ss_pred ChHHHHHHHHHHHHHhC
Confidence 69999999999988665
No 475
>PRK00300 gmk guanylate kinase; Provisional
Probab=59.46 E-value=6.3 Score=28.54 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++....
T Consensus 16 sGKstl~~~l~~~~~ 30 (205)
T PRK00300 16 AGKSTLVKALLERDP 30 (205)
T ss_pred CCHHHHHHHHHhhCc
Confidence 699999999998653
No 476
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=59.35 E-value=7.4 Score=26.71 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++.+.
T Consensus 7 sGK~t~~~~la~~~ 20 (151)
T PF00406_consen 7 SGKGTQAKRLAKRY 20 (151)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhc
Confidence 69999999999975
No 477
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=59.31 E-value=79 Score=24.25 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=42.6
Q ss_pred CceEEEEEeCCCCc---hhHHHhhccCCCCCCCceEEEEecchhH-------HhhcCCCceEecCCCCHHHHHHHHHHhh
Q 039644 67 RMKVLIVFDDVTCF---SQLESLMGSLDWLTPVSRIILTTRNKQV-------LRNWGVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 67 ~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~iivTtR~~~~-------~~~~~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
+.+-++|+++.... ..++.+...+....++..+|+++..... ....+....+...+++..+....+...+
T Consensus 45 ~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 124 (302)
T TIGR01128 45 SERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARL 124 (302)
T ss_pred cCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHH
Confidence 34567889999753 3466666666655556666666542111 1111245677788888888777766654
No 478
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=59.24 E-value=6.2 Score=25.94 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||+..+...
T Consensus 7 ~GKStl~~~l~~~ 19 (157)
T cd00882 7 VGKTSLLNRLLGG 19 (157)
T ss_pred CcHHHHHHHHHhC
Confidence 6999999999874
No 479
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=59.22 E-value=45 Score=28.49 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=34.3
Q ss_pred hHHHHhhcCCceEEEEEeCCCCchh---HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 58 IDLNFRRLSRMKVLIVFDDVTCFSQ---LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 58 ~~~l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
.-.|.+.|-.++=+|+||.-.+.-+ ..++-..+... .| .+||.|.++.....+
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V 216 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNV 216 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHH
Confidence 3446666667888999999876433 33333333332 33 599999998877665
No 480
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=59.12 E-value=12 Score=26.23 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.5
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||++..++..+.+.
T Consensus 11 ~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 11 VGKTTTAAKLALYLKKK 27 (173)
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 69999999999977655
No 481
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=59.05 E-value=7.9 Score=30.57 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=17.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCF 23 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~w 23 (192)
+|||+||+.++..+...|..+..
T Consensus 54 ~gKT~la~~lA~~l~~~~~~i~~ 76 (329)
T COG0714 54 VGKTLLARALARALGLPFVRIQC 76 (329)
T ss_pred ccHHHHHHHHHHHhCCCeEEEec
Confidence 69999999999988755544333
No 482
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=58.72 E-value=1e+02 Score=27.73 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCchhHHHhhccCCCCC--CCceEEEE
Q 039644 67 RMKVLIVFDDVTCFSQLESLMGSLDWLT--PVSRIILT 102 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~--~~~~iivT 102 (192)
....+||||-....+++..+...+.... +-+.+|+|
T Consensus 294 p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlT 331 (767)
T PRK14723 294 PVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIIT 331 (767)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEe
Confidence 4567889988766666665554443221 23457776
No 483
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=58.71 E-value=14 Score=23.38 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+|..++..+.+
T Consensus 11 ~Gkst~~~~la~~~~~ 26 (104)
T cd02042 11 VGKTTTAVNLAAALAR 26 (104)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 6999999999997654
No 484
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=58.71 E-value=7 Score=26.78 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||+|+..+.+.
T Consensus 10 vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 10 VGKTSLINRLING 22 (162)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhh
Confidence 6999999999883
No 485
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=58.59 E-value=11 Score=30.60 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=18.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||||+..++++.-++...+..++
T Consensus 84 SGKSTLt~~LaN~~l~rG~~v~iiD 108 (398)
T COG1341 84 SGKSTLTTYLANKLLARGRKVAIID 108 (398)
T ss_pred cCHHHHHHHHHHHHhhcCceEEEEe
Confidence 6999999999998665443344443
No 486
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=58.48 E-value=24 Score=31.27 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=15.9
Q ss_pred HHHhhcCCceEEEEEeCCCC
Q 039644 60 LNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~ 79 (192)
.+.+.+-.+|-+|+||...+
T Consensus 619 alARaLl~~P~ILlLDEaTS 638 (709)
T COG2274 619 ALARALLSKPKILLLDEATS 638 (709)
T ss_pred HHHHHhccCCCEEEEeCccc
Confidence 35666778999999999864
No 487
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=58.36 E-value=6.5 Score=32.10 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||++.++...
T Consensus 230 sGKTTL~~~La~~~ 243 (399)
T PRK08099 230 SGKSTLVNKLANIF 243 (399)
T ss_pred CCHHHHHHHHHHHh
Confidence 59999999999864
No 488
>PRK04328 hypothetical protein; Provisional
Probab=58.34 E-value=12 Score=28.26 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=18.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+||.+++......-...+|++
T Consensus 34 sGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 34 TGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 5999999998876433346678886
No 489
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=58.28 E-value=6.7 Score=30.54 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+...+.
T Consensus 73 SGKSTlar~L~~ll~ 87 (290)
T TIGR00554 73 VGKSTTARILQALLS 87 (290)
T ss_pred CCHHHHHHHHHHHHh
Confidence 699999998876554
No 490
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=58.15 E-value=1.1e+02 Score=25.46 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||++..++..+..
T Consensus 252 vGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 252 VGKTTTLAKMAWQFHG 267 (436)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6999999999987543
No 491
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=58.13 E-value=10 Score=27.66 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=16.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFL 24 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv 24 (192)
+|||||.+.+...+...+. +.++
T Consensus 12 sGKTTll~~l~~~l~~~~~-~~~~ 34 (199)
T TIGR00101 12 SGKTALIEALTRALRQKYQ-LAVI 34 (199)
T ss_pred CCHHHHHHHHHHhhCcCCc-EEEE
Confidence 5999999999988765433 4444
No 492
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=58.09 E-value=6.7 Score=26.88 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||+..+..
T Consensus 11 vGKTsli~~l~~ 22 (161)
T cd04113 11 TGKSCLLHRFVE 22 (161)
T ss_pred CCHHHHHHHHHh
Confidence 699999999986
No 493
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=58.09 E-value=7.2 Score=27.80 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=14.9
Q ss_pred CccHHHHHHHHHHHhCCCchHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALK 165 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~ 165 (192)
.....++...+++.+-++|...-
T Consensus 151 g~~v~~lf~~l~~~l~~~~~~~~ 173 (182)
T cd04128 151 SINVQKIFKIVLAKAFDLPLTIP 173 (182)
T ss_pred CCCHHHHHHHHHHHHHhcCCChh
Confidence 34566677777777777776543
No 494
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=57.89 E-value=6.2 Score=27.30 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||++.+.+.
T Consensus 11 ~GKSsl~~~l~~~ 23 (172)
T cd01862 11 VGKTSLMNQYVNK 23 (172)
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999773
No 495
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=57.82 E-value=14 Score=26.21 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=11.1
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||.+++..
T Consensus 11 sGKTTli~~ll~ 22 (178)
T PF02492_consen 11 SGKTTLINHLLK 22 (178)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 599999999996
No 496
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=57.77 E-value=9.4 Score=29.39 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||++++.+.....
T Consensus 44 tGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 44 TGKTSLIQNFLSSLD 58 (272)
T ss_dssp SSHHHHHHHHHHCST
T ss_pred CchhHHHHhhhccCC
Confidence 699999999887543
No 497
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=57.72 E-value=52 Score=25.41 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=17.1
Q ss_pred CchhHHHHHHHHHhhCC-C-cceEEEe
Q 039644 1 IGKTAIARAIFDKISGD-F-ECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F-~~~~wv~ 25 (192)
+||||++..++..+..+ - ..+..+.
T Consensus 205 vGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 205 VGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 69999999999876433 1 2344454
No 498
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=57.42 E-value=7.9 Score=30.70 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.2
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+|||++|+.++..+.-.|
T Consensus 75 tGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 75 TGKSTHIEQIAARLNWPC 92 (327)
T ss_pred ChHHHHHHHHHHHHCCCe
Confidence 699999999999876444
No 499
>PRK14527 adenylate kinase; Provisional
Probab=57.26 E-value=7.9 Score=27.81 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++.+.
T Consensus 17 sGKsT~a~~La~~~ 30 (191)
T PRK14527 17 AGKGTQAERLAQEL 30 (191)
T ss_pred CCHHHHHHHHHHHh
Confidence 59999999999865
No 500
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=57.25 E-value=7.7 Score=30.37 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|..++.++
T Consensus 103 sGKStlA~~La~~l 116 (301)
T PRK04220 103 VGTSTIAFELASRL 116 (301)
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999876
Done!