Query 039644
Match_columns 192
No_of_seqs 106 out of 1266
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 20:19:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.2E-28 4.1E-33 204.0 19.5 165 1-175 163-344 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 1.6E-24 5.4E-29 192.9 14.1 176 1-190 158-349 (1249)
3 1vt4_I APAF-1 related killer D 99.9 1E-22 3.6E-27 175.2 12.7 160 1-181 161-349 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 4.3E-22 1.5E-26 166.0 11.0 171 1-189 158-348 (591)
5 2fna_A Conserved hypothetical 99.2 5.5E-10 1.9E-14 86.9 12.9 101 68-172 137-254 (357)
6 1w5s_A Origin recognition comp 99.1 7.8E-10 2.7E-14 87.9 13.1 163 1-168 63-266 (412)
7 2qen_A Walker-type ATPase; unk 99.1 5.2E-10 1.8E-14 86.9 10.5 162 1-171 42-249 (350)
8 1njg_A DNA polymerase III subu 99.0 2E-08 6.9E-13 73.5 13.8 102 67-170 125-230 (250)
9 2qby_B CDC6 homolog 3, cell di 99.0 4.2E-08 1.5E-12 77.2 16.3 177 1-186 56-270 (384)
10 2chg_A Replication factor C sm 98.8 1.5E-07 5.2E-12 68.0 12.9 151 1-168 49-204 (226)
11 2qby_A CDC6 homolog 1, cell di 98.7 6.4E-08 2.2E-12 75.9 9.2 159 1-164 56-241 (386)
12 2v1u_A Cell division control p 98.7 1.8E-07 6.1E-12 73.4 11.2 157 1-162 55-243 (387)
13 1fnn_A CDC6P, cell division co 98.7 6.9E-07 2.4E-11 70.2 13.9 162 1-167 55-246 (389)
14 1sxj_B Activator 1 37 kDa subu 98.5 1.7E-06 5.7E-11 66.3 10.8 151 1-169 53-211 (323)
15 1iqp_A RFCS; clamp loader, ext 98.2 8.2E-06 2.8E-10 62.5 10.0 99 67-167 109-211 (327)
16 2z4s_A Chromosomal replication 98.2 7.4E-06 2.5E-10 65.9 9.7 149 1-165 141-303 (440)
17 1jr3_A DNA polymerase III subu 98.1 5E-05 1.7E-09 59.2 11.7 100 67-168 118-221 (373)
18 2chq_A Replication factor C sm 98.0 0.00014 4.9E-09 55.3 13.6 98 67-166 101-202 (319)
19 1a5t_A Delta prime, HOLB; zinc 98.0 0.00019 6.5E-09 55.5 13.7 94 67-167 107-204 (334)
20 3bos_A Putative DNA replicatio 98.0 2E-05 6.7E-10 57.6 7.2 139 1-167 63-216 (242)
21 1d2n_A N-ethylmaleimide-sensit 97.9 0.00046 1.6E-08 51.6 13.9 118 66-190 122-265 (272)
22 1hqc_A RUVB; extended AAA-ATPa 97.7 0.00031 1.1E-08 53.7 10.3 142 1-170 49-213 (324)
23 1sxj_D Activator 1 41 kDa subu 97.7 0.00077 2.6E-08 52.0 11.8 98 67-166 132-233 (353)
24 1l8q_A Chromosomal replication 97.6 0.0011 3.7E-08 50.9 11.8 141 1-162 48-202 (324)
25 3h4m_A Proteasome-activating n 97.6 0.0015 5E-08 49.0 12.3 118 66-187 108-259 (285)
26 3te6_A Regulatory protein SIR3 97.5 0.0014 4.7E-08 50.4 10.6 131 1-137 56-212 (318)
27 3pvs_A Replication-associated 97.4 0.0014 4.7E-08 52.8 10.6 141 1-165 61-212 (447)
28 1sxj_A Activator 1 95 kDa subu 97.4 0.0018 6E-08 53.1 11.3 154 1-167 88-252 (516)
29 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.015 5.1E-07 42.7 15.4 100 67-167 97-221 (262)
30 3eie_A Vacuolar protein sortin 97.4 0.0016 5.5E-08 50.0 10.2 101 66-168 108-228 (322)
31 1sxj_E Activator 1 40 kDa subu 97.4 0.0021 7.1E-08 49.7 10.9 99 67-167 133-236 (354)
32 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.019 6.4E-07 44.1 16.0 100 67-168 104-223 (322)
33 3u61_B DNA polymerase accessor 97.3 0.0047 1.6E-07 47.2 12.3 142 1-164 59-212 (324)
34 3syl_A Protein CBBX; photosynt 97.3 0.0034 1.2E-07 47.6 11.1 69 69-137 131-218 (309)
35 2zan_A Vacuolar protein sortin 97.3 0.0064 2.2E-07 48.8 13.1 101 66-168 225-345 (444)
36 2qp9_X Vacuolar protein sortin 97.2 0.005 1.7E-07 47.9 11.0 100 67-168 142-261 (355)
37 3d8b_A Fidgetin-like protein 1 97.2 0.016 5.3E-07 45.1 13.7 100 67-168 175-295 (357)
38 3vfd_A Spastin; ATPase, microt 97.1 0.023 7.8E-07 44.7 14.7 52 115-168 274-326 (389)
39 1sxj_C Activator 1 40 kDa subu 97.1 0.011 3.6E-07 45.7 12.2 95 67-163 109-207 (340)
40 1jbk_A CLPB protein; beta barr 97.0 0.00046 1.6E-08 48.1 3.2 65 66-132 113-194 (195)
41 3pfi_A Holliday junction ATP-d 96.9 0.0096 3.3E-07 45.7 10.5 98 68-167 106-226 (338)
42 3uk6_A RUVB-like 2; hexameric 96.9 0.0096 3.3E-07 46.2 10.2 95 69-166 190-301 (368)
43 3b9p_A CG5977-PA, isoform A; A 96.9 0.063 2.2E-06 40.2 14.4 98 67-168 112-233 (297)
44 3ec2_A DNA replication protein 96.7 0.0034 1.2E-07 43.7 5.6 88 1-105 49-142 (180)
45 3cf0_A Transitional endoplasmi 96.6 0.021 7.3E-07 43.2 10.0 140 1-163 60-223 (301)
46 2gno_A DNA polymerase III, gam 96.5 0.016 5.5E-07 44.1 9.0 118 1-136 29-152 (305)
47 1g5t_A COB(I)alamin adenosyltr 96.3 0.016 5.4E-07 41.2 7.1 121 1-123 39-180 (196)
48 4b4t_J 26S protease regulatory 96.2 0.12 4E-06 40.9 12.5 139 1-163 193-356 (405)
49 4fcw_A Chaperone protein CLPB; 96.1 0.038 1.3E-06 41.7 9.0 25 1-25 58-82 (311)
50 2w58_A DNAI, primosome compone 96.0 0.011 3.8E-07 41.8 5.2 25 1-25 65-89 (202)
51 4b4t_L 26S protease subunit RP 95.7 0.072 2.5E-06 42.6 9.4 139 1-163 226-389 (437)
52 4b4t_H 26S protease regulatory 95.6 0.12 4.1E-06 41.6 10.3 138 1-162 254-416 (467)
53 2kjq_A DNAA-related protein; s 95.6 0.016 5.4E-07 39.3 4.5 25 1-25 47-71 (149)
54 3t15_A Ribulose bisphosphate c 95.6 0.066 2.2E-06 40.4 8.4 17 1-17 47-63 (293)
55 3hu3_A Transitional endoplasmi 95.6 0.049 1.7E-06 44.3 8.1 98 66-167 295-414 (489)
56 1lv7_A FTSH; alpha/beta domain 95.2 0.62 2.1E-05 34.0 14.7 91 96-189 150-255 (257)
57 2ce7_A Cell division protein F 95.2 0.51 1.7E-05 38.2 12.6 138 1-161 60-221 (476)
58 3m6a_A ATP-dependent protease 95.1 0.053 1.8E-06 44.7 7.0 21 116-136 246-266 (543)
59 2r62_A Cell division protease 95.1 0.046 1.6E-06 40.3 6.1 70 67-136 102-196 (268)
60 1ofh_A ATP-dependent HSL prote 94.7 0.24 8.3E-06 37.0 9.1 19 116-134 195-213 (310)
61 3pxi_A Negative regulator of g 94.6 0.18 6.1E-06 43.2 9.1 115 1-135 532-674 (758)
62 4b4t_M 26S protease regulatory 94.5 0.12 4.2E-06 41.3 7.4 139 1-163 226-389 (434)
63 4b4t_I 26S protease regulatory 94.5 0.18 6.3E-06 40.2 8.3 163 1-187 227-424 (437)
64 3n70_A Transport activator; si 94.5 0.078 2.7E-06 35.4 5.4 36 70-105 78-115 (145)
65 4b4t_K 26S protease regulatory 94.5 0.14 4.9E-06 40.8 7.6 18 1-18 217-234 (428)
66 3cf2_A TER ATPase, transitiona 94.4 0.22 7.4E-06 43.0 9.0 137 1-163 249-409 (806)
67 2bjv_A PSP operon transcriptio 94.4 0.31 1.1E-05 35.8 8.9 15 1-15 40-54 (265)
68 1qvr_A CLPB protein; coiled co 94.1 0.23 8E-06 43.1 8.8 67 67-135 262-344 (854)
69 2x8a_A Nuclear valosin-contain 93.9 0.9 3.1E-05 33.8 10.8 116 1-136 55-191 (274)
70 2p65_A Hypothetical protein PF 93.5 0.053 1.8E-06 37.2 3.1 16 1-16 54-69 (187)
71 1ojl_A Transcriptional regulat 92.8 1.1 3.6E-05 33.9 9.7 14 1-14 36-49 (304)
72 2dhr_A FTSH; AAA+ protein, hex 92.3 1.1 3.8E-05 36.4 9.6 69 68-136 123-214 (499)
73 1ixz_A ATP-dependent metallopr 92.2 1.2 4.2E-05 32.3 9.1 43 115-161 178-221 (254)
74 1r6b_X CLPA protein; AAA+, N-t 92.0 1.5 5.2E-05 37.4 10.7 69 67-136 277-362 (758)
75 1iy2_A ATP-dependent metallopr 91.8 1.3 4.5E-05 32.7 9.1 44 114-161 201-245 (278)
76 2cvh_A DNA repair and recombin 91.7 0.79 2.7E-05 32.3 7.5 22 1-25 31-52 (220)
77 2qgz_A Helicase loader, putati 91.4 0.12 4.2E-06 39.2 3.0 25 1-25 163-188 (308)
78 3pxg_A Negative regulator of g 91.4 1.1 3.7E-05 36.1 8.6 66 67-136 266-338 (468)
79 1jr3_D DNA polymerase III, del 91.1 4 0.00014 31.0 14.7 98 67-166 75-183 (343)
80 1qvr_A CLPB protein; coiled co 89.7 1.2 4.3E-05 38.6 8.1 16 1-16 599-614 (854)
81 2orw_A Thymidine kinase; TMTK, 89.7 0.088 3E-06 36.9 0.8 43 61-105 69-112 (184)
82 3co5_A Putative two-component 89.7 0.13 4.6E-06 34.1 1.6 36 70-105 77-115 (143)
83 1sky_E F1-ATPase, F1-ATP synth 89.5 0.46 1.6E-05 38.4 4.8 24 1-24 162-186 (473)
84 2vhj_A Ntpase P4, P4; non- hyd 89.1 0.1 3.5E-06 40.1 0.8 22 1-25 134-155 (331)
85 1r6b_X CLPA protein; AAA+, N-t 88.7 0.59 2E-05 39.9 5.3 21 116-136 646-666 (758)
86 3ice_A Transcription terminati 87.7 0.18 6E-06 39.9 1.3 18 1-18 185-202 (422)
87 2ck3_D ATP synthase subunit be 87.2 1.6 5.5E-05 35.3 6.6 43 1-47 164-207 (482)
88 3pxi_A Negative regulator of g 86.9 2.8 9.7E-05 35.8 8.4 67 66-136 265-338 (758)
89 1v5w_A DMC1, meiotic recombina 85.8 2.3 7.8E-05 32.7 6.7 25 1-25 133-163 (343)
90 1fx0_B ATP synthase beta chain 85.6 1.9 6.5E-05 35.0 6.2 42 1-46 176-218 (498)
91 3hjn_A DTMP kinase, thymidylat 84.9 2.3 7.7E-05 29.9 5.8 25 1-25 11-35 (197)
92 1qhx_A CPT, protein (chloramph 84.4 0.44 1.5E-05 32.5 1.9 15 1-15 14-28 (178)
93 3vr4_D V-type sodium ATPase su 84.2 2.3 7.9E-05 34.2 6.1 75 1-79 162-259 (465)
94 1ypw_A Transitional endoplasmi 84.1 6.7 0.00023 33.9 9.4 21 116-136 365-385 (806)
95 3l0o_A Transcription terminati 83.6 0.15 5.1E-06 40.3 -0.9 16 1-16 186-201 (427)
96 4hlc_A DTMP kinase, thymidylat 82.7 2.5 8.4E-05 29.9 5.3 20 1-20 13-32 (205)
97 2c9o_A RUVB-like 1; hexameric 82.6 1.6 5.6E-05 34.9 4.8 17 1-17 74-90 (456)
98 2qe7_A ATP synthase subunit al 82.5 1.4 4.7E-05 35.9 4.2 13 66-78 252-264 (502)
99 3kb2_A SPBC2 prophage-derived 81.7 0.67 2.3E-05 31.2 1.9 15 1-15 12-26 (173)
100 3jvv_A Twitching mobility prot 81.2 0.45 1.5E-05 37.0 1.0 51 57-110 185-235 (356)
101 2ck3_A ATP synthase subunit al 81.2 1.7 5.8E-05 35.4 4.3 14 66-79 260-273 (510)
102 2r9v_A ATP synthase subunit al 81.1 1.3 4.4E-05 36.1 3.6 14 66-79 265-278 (515)
103 1fx0_A ATP synthase alpha chai 80.9 3.3 0.00011 33.7 5.9 15 66-80 253-267 (507)
104 3oaa_A ATP synthase subunit al 80.5 5.4 0.00019 32.5 7.0 14 66-79 252-265 (513)
105 1nks_A Adenylate kinase; therm 80.3 1.5 5.2E-05 30.0 3.4 16 1-16 12-27 (194)
106 2i1q_A DNA repair and recombin 80.1 2.1 7.2E-05 32.4 4.4 14 1-14 109-122 (322)
107 3trf_A Shikimate kinase, SK; a 79.9 0.84 2.9E-05 31.3 1.9 15 1-15 16-30 (185)
108 2plr_A DTMP kinase, probable t 79.7 1.9 6.4E-05 30.0 3.8 18 1-18 15-32 (213)
109 3vaa_A Shikimate kinase, SK; s 79.0 0.96 3.3E-05 31.6 2.0 15 1-15 36-50 (199)
110 2jaq_A Deoxyguanosine kinase; 78.5 0.86 2.9E-05 31.6 1.7 15 1-15 11-25 (205)
111 2j9r_A Thymidine kinase; TK1, 77.5 5.9 0.0002 28.4 5.8 94 1-105 39-137 (214)
112 1via_A Shikimate kinase; struc 77.3 1 3.5E-05 30.6 1.7 15 1-15 15-29 (175)
113 3dm5_A SRP54, signal recogniti 76.9 16 0.00056 29.1 8.7 17 1-17 111-127 (443)
114 3bh0_A DNAB-like replicative h 76.1 5.7 0.00019 30.0 5.7 25 1-25 79-103 (315)
115 4eun_A Thermoresistant glucoki 75.9 1.9 6.6E-05 30.0 2.9 20 1-25 40-59 (200)
116 3uie_A Adenylyl-sulfate kinase 75.8 2 6.9E-05 29.9 3.0 15 1-15 36-50 (200)
117 1nn5_A Similar to deoxythymidy 75.7 1.8 6.3E-05 30.2 2.8 17 1-17 20-36 (215)
118 1kag_A SKI, shikimate kinase I 75.6 1.2 4.2E-05 30.0 1.7 15 1-15 15-29 (173)
119 2yvu_A Probable adenylyl-sulfa 75.3 2.1 7.3E-05 29.3 3.0 16 1-16 24-39 (186)
120 1ly1_A Polynucleotide kinase; 75.2 1.3 4.3E-05 30.0 1.8 12 1-12 13-24 (181)
121 1zuh_A Shikimate kinase; alpha 75.1 1.5 5E-05 29.5 2.0 15 1-15 18-32 (168)
122 3t61_A Gluconokinase; PSI-biol 75.0 1.4 4.9E-05 30.7 2.0 14 1-14 29-42 (202)
123 2ze6_A Isopentenyl transferase 74.9 1.4 4.7E-05 32.3 1.9 15 1-15 12-26 (253)
124 2vli_A Antibiotic resistance p 74.7 1.1 3.8E-05 30.5 1.4 15 1-15 16-30 (183)
125 3gqb_B V-type ATP synthase bet 74.5 9.5 0.00032 30.7 6.7 16 1-16 158-173 (464)
126 1u0j_A DNA replication protein 74.4 14 0.0005 27.3 7.4 41 95-135 189-250 (267)
127 2dr3_A UPF0273 protein PH0284; 74.2 2.2 7.7E-05 30.4 3.0 25 1-25 34-58 (247)
128 1kht_A Adenylate kinase; phosp 74.2 1.5 5.1E-05 30.0 1.9 16 1-16 14-29 (192)
129 2rhm_A Putative kinase; P-loop 74.0 1.6 5.5E-05 29.9 2.0 14 1-14 16-29 (193)
130 1u94_A RECA protein, recombina 73.3 2.3 7.9E-05 32.9 3.0 25 1-25 74-98 (356)
131 2z0h_A DTMP kinase, thymidylat 73.0 4.9 0.00017 27.5 4.4 16 1-16 11-26 (197)
132 2w0m_A SSO2452; RECA, SSPF, un 72.7 2.1 7.3E-05 30.1 2.5 25 1-25 34-58 (235)
133 1kgd_A CASK, peripheral plasma 72.7 1.6 5.5E-05 29.9 1.8 15 1-15 16-30 (180)
134 2pt5_A Shikimate kinase, SK; a 72.6 1.8 6.3E-05 29.0 2.0 15 1-15 11-25 (168)
135 2iyv_A Shikimate kinase, SK; t 72.6 1.8 6.2E-05 29.5 2.0 15 1-15 13-27 (184)
136 1tev_A UMP-CMP kinase; ploop, 72.4 1.8 6E-05 29.7 1.9 14 1-14 14-27 (196)
137 3iij_A Coilin-interacting nucl 72.3 1.6 5.4E-05 29.8 1.7 14 1-14 22-35 (180)
138 2zr9_A Protein RECA, recombina 72.0 2.6 8.9E-05 32.5 3.0 25 1-25 72-96 (349)
139 2wwf_A Thymidilate kinase, put 71.9 1.7 5.9E-05 30.3 1.8 16 1-16 21-36 (212)
140 1e6c_A Shikimate kinase; phosp 71.8 1.7 5.9E-05 29.2 1.8 15 1-15 13-27 (173)
141 2c61_A A-type ATP synthase non 71.7 2.8 9.4E-05 33.8 3.1 74 1-78 163-259 (469)
142 1zp6_A Hypothetical protein AT 71.7 1.5 5.1E-05 30.1 1.4 13 1-13 20-32 (191)
143 4a74_A DNA repair and recombin 71.4 3.6 0.00012 28.9 3.5 25 1-25 36-66 (231)
144 2pbr_A DTMP kinase, thymidylat 71.0 2 6.8E-05 29.4 1.9 15 1-15 11-25 (195)
145 2bwj_A Adenylate kinase 5; pho 70.9 2 6.8E-05 29.6 1.9 15 1-15 23-37 (199)
146 1in4_A RUVB, holliday junction 70.9 2 6.7E-05 32.8 2.0 50 116-167 173-222 (334)
147 3cm0_A Adenylate kinase; ATP-b 70.8 1.9 6.3E-05 29.5 1.7 14 1-14 15-28 (186)
148 2pt7_A CAG-ALFA; ATPase, prote 70.8 2.8 9.7E-05 32.0 2.9 94 1-107 182-276 (330)
149 2c95_A Adenylate kinase 1; tra 70.7 1.8 6.1E-05 29.8 1.7 14 1-14 20-33 (196)
150 2cdn_A Adenylate kinase; phosp 70.2 2.2 7.5E-05 29.7 2.0 15 1-15 31-45 (201)
151 3hr8_A Protein RECA; alpha and 70.1 3.1 0.0001 32.3 3.0 25 1-25 72-96 (356)
152 1xp8_A RECA protein, recombina 69.8 3.1 0.00011 32.4 3.0 25 1-25 85-109 (366)
153 1gtv_A TMK, thymidylate kinase 69.6 1.7 5.7E-05 30.4 1.3 15 1-15 11-25 (214)
154 1ex7_A Guanylate kinase; subst 69.6 2 7E-05 30.0 1.7 18 1-18 12-29 (186)
155 3c8u_A Fructokinase; YP_612366 69.5 2 6.8E-05 30.2 1.7 15 1-15 33-47 (208)
156 1n0w_A DNA repair protein RAD5 69.4 4.2 0.00014 28.9 3.5 25 1-25 35-65 (243)
157 1xjc_A MOBB protein homolog; s 69.3 3.7 0.00013 28.2 3.0 17 1-17 15-31 (169)
158 2vda_B Maltoporin; sugar trans 69.2 3 0.0001 18.6 1.6 17 158-174 9-25 (28)
159 3lw7_A Adenylate kinase relate 69.1 1.9 6.3E-05 28.8 1.4 12 1-13 12-23 (179)
160 3a00_A Guanylate kinase, GMP k 68.6 2.6 8.7E-05 29.0 2.1 19 1-19 12-30 (186)
161 1knq_A Gluconate kinase; ALFA/ 68.5 2.2 7.6E-05 28.8 1.7 14 1-14 19-32 (175)
162 4edh_A DTMP kinase, thymidylat 68.5 8.5 0.00029 27.3 4.9 17 1-17 17-33 (213)
163 4a1f_A DNAB helicase, replicat 68.5 9.1 0.00031 29.4 5.3 25 1-25 57-81 (338)
164 1aky_A Adenylate kinase; ATP:A 68.5 2.1 7.2E-05 30.3 1.7 15 1-15 15-29 (220)
165 2bdt_A BH3686; alpha-beta prot 68.2 2.3 7.8E-05 29.2 1.8 12 1-12 13-24 (189)
166 1ye8_A Protein THEP1, hypothet 67.9 2.3 8E-05 29.3 1.8 63 65-129 96-169 (178)
167 3fb4_A Adenylate kinase; psych 67.7 2.5 8.6E-05 29.6 1.9 14 1-14 11-24 (216)
168 1qf9_A UMP/CMP kinase, protein 67.7 2.6 8.8E-05 28.8 1.9 14 1-14 17-30 (194)
169 3asz_A Uridine kinase; cytidin 67.6 2.4 8.1E-05 29.7 1.8 15 1-15 17-31 (211)
170 1zak_A Adenylate kinase; ATP:A 67.3 2.3 7.9E-05 30.1 1.7 15 1-15 16-30 (222)
171 1cr0_A DNA primase/helicase; R 67.0 4 0.00014 30.3 3.0 25 1-25 46-71 (296)
172 3tau_A Guanylate kinase, GMP k 66.6 2.6 8.8E-05 29.7 1.8 16 1-16 19-34 (208)
173 2if2_A Dephospho-COA kinase; a 66.6 2.5 8.7E-05 29.3 1.8 12 1-12 12-23 (204)
174 3tr0_A Guanylate kinase, GMP k 66.5 2.6 8.7E-05 29.2 1.7 14 1-14 18-31 (205)
175 3io5_A Recombination and repai 66.3 3.5 0.00012 31.7 2.5 25 1-25 39-65 (333)
176 1ak2_A Adenylate kinase isoenz 66.1 2.6 8.9E-05 30.2 1.8 15 1-15 27-41 (233)
177 1cke_A CK, MSSA, protein (cyti 66.0 2.8 9.7E-05 29.6 1.9 14 1-14 16-29 (227)
178 3dl0_A Adenylate kinase; phosp 66.0 2.8 9.4E-05 29.5 1.9 14 1-14 11-24 (216)
179 2z43_A DNA repair and recombin 65.8 5.2 0.00018 30.3 3.5 25 1-25 118-148 (324)
180 1ukz_A Uridylate kinase; trans 65.7 2.8 9.7E-05 29.1 1.9 14 1-14 26-39 (203)
181 1zd8_A GTP:AMP phosphotransfer 65.7 2.5 8.6E-05 30.0 1.6 14 1-14 18-31 (227)
182 2bbw_A Adenylate kinase 4, AK4 65.2 3 0.0001 30.1 1.9 14 1-14 38-51 (246)
183 2v54_A DTMP kinase, thymidylat 65.0 2.7 9.3E-05 29.1 1.6 14 1-14 15-28 (204)
184 3vr4_A V-type sodium ATPase ca 64.6 6.3 0.00022 32.7 3.9 23 1-25 243-265 (600)
185 2j41_A Guanylate kinase; GMP, 64.3 3 0.0001 28.9 1.7 14 1-14 17-30 (207)
186 1y63_A LMAJ004144AAA protein; 64.3 3.2 0.00011 28.4 1.9 13 1-13 21-33 (184)
187 3be4_A Adenylate kinase; malar 64.2 3.3 0.00011 29.3 1.9 14 1-14 16-29 (217)
188 3mfy_A V-type ATP synthase alp 64.1 6.4 0.00022 32.6 3.8 38 1-44 238-275 (588)
189 1e4v_A Adenylate kinase; trans 64.1 3.3 0.00011 29.1 1.9 14 1-14 11-24 (214)
190 1htw_A HI0065; nucleotide-bind 64.0 3.2 0.00011 28.0 1.8 14 1-14 44-57 (158)
191 2qor_A Guanylate kinase; phosp 64.0 3.1 0.00011 29.0 1.8 15 1-15 23-37 (204)
192 1gvn_B Zeta; postsegregational 64.0 3.7 0.00013 30.6 2.3 15 1-15 44-58 (287)
193 2r8r_A Sensor protein; KDPD, P 63.7 5.3 0.00018 28.9 3.0 17 1-17 17-33 (228)
194 2jeo_A Uridine-cytidine kinase 63.7 3.1 0.0001 30.1 1.8 14 1-14 36-49 (245)
195 4tmk_A Protein (thymidylate ki 63.7 10 0.00034 27.0 4.4 24 1-24 14-38 (213)
196 2zts_A Putative uncharacterize 63.4 7.2 0.00025 27.7 3.7 25 1-25 41-66 (251)
197 3cf2_A TER ATPase, transitiona 63.4 1.7 6E-05 37.5 0.4 116 1-136 522-661 (806)
198 1m7g_A Adenylylsulfate kinase; 62.8 3.6 0.00012 28.9 1.9 15 1-15 36-50 (211)
199 2pez_A Bifunctional 3'-phospho 62.8 3.4 0.00012 28.1 1.8 15 1-15 16-30 (179)
200 1um8_A ATP-dependent CLP prote 62.6 3.5 0.00012 31.8 2.0 17 1-17 83-99 (376)
201 1rz3_A Hypothetical protein rb 62.5 5.7 0.0002 27.6 3.0 15 1-15 33-47 (201)
202 2xb4_A Adenylate kinase; ATP-b 62.5 3.6 0.00012 29.2 1.9 14 1-14 11-24 (223)
203 1uf9_A TT1252 protein; P-loop, 62.1 3.5 0.00012 28.4 1.7 13 1-13 19-31 (203)
204 2ehv_A Hypothetical protein PH 61.6 4.9 0.00017 28.7 2.5 25 1-25 41-66 (251)
205 3hws_A ATP-dependent CLP prote 61.6 3.8 0.00013 31.5 2.0 15 1-15 62-76 (363)
206 2ocp_A DGK, deoxyguanosine kin 61.5 3.7 0.00013 29.5 1.8 15 1-15 13-27 (241)
207 3cwq_A Para family chromosome 61.4 7.3 0.00025 27.3 3.4 24 1-25 12-35 (209)
208 3ake_A Cytidylate kinase; CMP 61.1 4.2 0.00014 28.1 2.0 15 1-15 13-27 (208)
209 3bgw_A DNAB-like replicative h 61.0 5 0.00017 32.0 2.7 25 1-25 208-232 (444)
210 3ney_A 55 kDa erythrocyte memb 60.6 3.9 0.00013 28.8 1.8 16 1-16 30-45 (197)
211 4dzz_A Plasmid partitioning pr 60.6 6.5 0.00022 27.1 3.0 25 1-25 13-37 (206)
212 3a4m_A L-seryl-tRNA(SEC) kinas 60.5 3.8 0.00013 30.0 1.8 15 1-15 15-29 (260)
213 1odf_A YGR205W, hypothetical 3 60.5 4.1 0.00014 30.5 2.0 15 1-15 42-56 (290)
214 1uj2_A Uridine-cytidine kinase 60.5 4.1 0.00014 29.5 1.9 15 1-15 33-47 (252)
215 2eyu_A Twitching motility prot 60.3 5.4 0.00018 29.3 2.6 99 1-107 36-134 (261)
216 2qt1_A Nicotinamide riboside k 60.2 3.4 0.00012 28.8 1.4 14 1-14 32-45 (207)
217 2dyk_A GTP-binding protein; GT 60.1 4.1 0.00014 26.6 1.8 13 1-13 12-24 (161)
218 1jjv_A Dephospho-COA kinase; P 59.9 3.5 0.00012 28.7 1.4 12 1-12 13-24 (206)
219 1nlf_A Regulatory protein REPA 59.7 7.9 0.00027 28.4 3.4 15 1-15 41-55 (279)
220 2p5t_B PEZT; postsegregational 59.7 3.7 0.00013 29.9 1.6 15 1-15 43-57 (253)
221 3v9p_A DTMP kinase, thymidylat 59.5 9.6 0.00033 27.4 3.7 17 1-17 36-52 (227)
222 1oix_A RAS-related protein RAB 59.3 4.2 0.00014 27.9 1.8 13 1-13 40-52 (191)
223 2grj_A Dephospho-COA kinase; T 59.3 4.5 0.00015 28.2 1.9 14 1-14 23-36 (192)
224 2c9o_A RUVB-like 1; hexameric 59.2 32 0.0011 27.3 7.1 95 70-167 297-409 (456)
225 1znw_A Guanylate kinase, GMP k 59.2 4.2 0.00014 28.4 1.8 15 1-15 31-45 (207)
226 2wsm_A Hydrogenase expression/ 59.2 6.5 0.00022 27.5 2.8 17 1-17 41-57 (221)
227 3ld9_A DTMP kinase, thymidylat 58.9 11 0.00036 27.1 3.9 16 1-16 32-47 (223)
228 3tlx_A Adenylate kinase 2; str 58.8 4.6 0.00016 29.2 1.9 14 1-14 40-53 (243)
229 1np6_A Molybdopterin-guanine d 58.7 4.4 0.00015 27.9 1.7 16 1-16 17-32 (174)
230 2ce2_X GTPase HRAS; signaling 58.4 4.5 0.00015 26.3 1.8 13 1-13 14-26 (166)
231 3aez_A Pantothenate kinase; tr 58.3 4.3 0.00015 30.8 1.7 15 1-15 101-115 (312)
232 2b8t_A Thymidine kinase; deoxy 58.1 7.5 0.00026 27.9 3.0 24 1-24 23-46 (223)
233 3d3q_A TRNA delta(2)-isopenten 58.0 4.7 0.00016 31.1 1.9 15 1-15 18-32 (340)
234 3lv8_A DTMP kinase, thymidylat 57.7 14 0.00049 26.6 4.4 25 1-25 38-63 (236)
235 2i3b_A HCR-ntpase, human cance 57.5 5.2 0.00018 27.8 2.0 15 1-15 12-26 (189)
236 3gqb_A V-type ATP synthase alp 57.3 17 0.00057 30.1 5.1 23 1-25 232-254 (578)
237 2r6a_A DNAB helicase, replicat 57.2 6 0.00021 31.5 2.5 25 1-25 214-239 (454)
238 3a8t_A Adenylate isopentenyltr 57.0 3.1 0.0001 32.1 0.7 15 1-15 51-65 (339)
239 1g3q_A MIND ATPase, cell divis 56.8 8 0.00027 27.3 3.0 25 1-25 14-38 (237)
240 3nwj_A ATSK2; P loop, shikimat 56.8 4.8 0.00016 29.5 1.7 15 1-15 59-73 (250)
241 3crm_A TRNA delta(2)-isopenten 56.7 4.9 0.00017 30.7 1.8 14 1-14 16-29 (323)
242 2hf9_A Probable hydrogenase ni 56.5 4.9 0.00017 28.2 1.8 14 1-14 49-62 (226)
243 2f9l_A RAB11B, member RAS onco 56.4 5 0.00017 27.6 1.8 13 1-13 16-28 (199)
244 1z2a_A RAS-related protein RAB 56.3 5.1 0.00018 26.3 1.8 13 1-13 16-28 (168)
245 3con_A GTPase NRAS; structural 55.7 5.2 0.00018 27.1 1.8 13 1-13 32-44 (190)
246 1u8z_A RAS-related protein RAL 55.6 5.4 0.00018 26.1 1.8 13 1-13 15-27 (168)
247 1z6g_A Guanylate kinase; struc 55.5 5.2 0.00018 28.3 1.8 14 1-14 34-47 (218)
248 1q57_A DNA primase/helicase; d 55.4 16 0.00054 29.5 4.8 25 1-25 253-278 (503)
249 4e22_A Cytidylate kinase; P-lo 55.4 5.2 0.00018 29.1 1.7 14 1-14 38-51 (252)
250 3e1s_A Exodeoxyribonuclease V, 55.4 42 0.0014 27.7 7.3 30 70-102 281-312 (574)
251 1lvg_A Guanylate kinase, GMP k 55.3 5.3 0.00018 27.8 1.8 15 1-15 15-29 (198)
252 1vht_A Dephospho-COA kinase; s 55.3 5.3 0.00018 28.0 1.7 12 1-12 15-26 (218)
253 1cp2_A CP2, nitrogenase iron p 55.2 10 0.00036 27.4 3.4 25 1-25 12-36 (269)
254 1c1y_A RAS-related protein RAP 55.1 5.5 0.00019 26.1 1.8 13 1-13 14-26 (167)
255 1kao_A RAP2A; GTP-binding prot 54.8 5.6 0.00019 25.9 1.8 12 1-12 14-25 (167)
256 4gp7_A Metallophosphoesterase; 54.8 4.1 0.00014 27.6 1.1 52 60-111 93-164 (171)
257 1yrb_A ATP(GTP)binding protein 54.8 10 0.00036 27.2 3.3 15 1-15 25-39 (262)
258 3ea0_A ATPase, para family; al 54.6 11 0.00038 26.7 3.5 25 1-25 16-41 (245)
259 1z0f_A RAB14, member RAS oncog 54.3 5.8 0.0002 26.3 1.8 13 1-13 26-38 (179)
260 1z08_A RAS-related protein RAB 54.3 5.8 0.0002 26.1 1.7 13 1-13 17-29 (170)
261 1ltq_A Polynucleotide kinase; 54.2 5.5 0.00019 29.5 1.8 13 1-13 13-25 (301)
262 1r2q_A RAS-related protein RAB 54.2 5.8 0.0002 26.0 1.8 12 1-12 17-28 (170)
263 2nzj_A GTP-binding protein REM 54.1 5.4 0.00019 26.4 1.6 12 1-12 15-26 (175)
264 1r8s_A ADP-ribosylation factor 54.1 5.9 0.0002 25.9 1.8 13 1-13 11-23 (164)
265 3r20_A Cytidylate kinase; stru 54.1 5.7 0.00019 28.8 1.8 14 1-14 20-33 (233)
266 2r44_A Uncharacterized protein 54.0 4.2 0.00014 30.7 1.1 21 117-137 179-199 (331)
267 2iwr_A Centaurin gamma 1; ANK 54.0 5.2 0.00018 26.7 1.5 13 1-13 18-30 (178)
268 2fn4_A P23, RAS-related protei 54.0 5.9 0.0002 26.4 1.8 13 1-13 20-32 (181)
269 1ek0_A Protein (GTP-binding pr 53.9 5.9 0.0002 26.0 1.8 13 1-13 14-26 (170)
270 2wjg_A FEOB, ferrous iron tran 53.7 5.1 0.00018 27.0 1.4 13 1-13 18-30 (188)
271 2f1r_A Molybdopterin-guanine d 53.6 3.8 0.00013 28.0 0.7 25 1-25 13-39 (171)
272 1z0j_A RAB-22, RAS-related pro 53.6 6 0.00021 26.0 1.8 13 1-13 17-29 (170)
273 1m7b_A RND3/RHOE small GTP-bin 53.5 6 0.00021 26.7 1.8 13 1-13 18-30 (184)
274 2zej_A Dardarin, leucine-rich 53.4 4.5 0.00015 27.5 1.1 12 1-12 13-24 (184)
275 3foz_A TRNA delta(2)-isopenten 53.2 6.1 0.00021 30.1 1.8 14 1-14 21-34 (316)
276 2erx_A GTP-binding protein DI- 53.1 5.4 0.00018 26.2 1.4 12 1-12 14-25 (172)
277 2qmh_A HPR kinase/phosphorylas 53.1 5.1 0.00017 28.5 1.3 14 1-14 45-58 (205)
278 1g41_A Heat shock protein HSLU 52.9 6.5 0.00022 31.5 2.0 17 117-133 330-346 (444)
279 4eaq_A DTMP kinase, thymidylat 52.8 6.8 0.00023 28.1 2.0 16 1-16 37-52 (229)
280 1p6x_A Thymidine kinase; P-loo 52.6 6.4 0.00022 30.2 1.9 17 1-17 18-34 (334)
281 2wji_A Ferrous iron transport 52.5 6 0.00021 26.2 1.6 12 1-12 14-25 (165)
282 4dkx_A RAS-related protein RAB 52.4 5.4 0.00018 28.3 1.4 12 1-12 24-35 (216)
283 3c5c_A RAS-like protein 12; GD 52.1 6.5 0.00022 26.7 1.8 13 1-13 32-44 (187)
284 1g16_A RAS-related protein SEC 52.0 6.6 0.00023 25.8 1.8 12 1-12 14-25 (170)
285 1ky3_A GTP-binding protein YPT 52.0 6.6 0.00022 26.1 1.8 13 1-13 19-31 (182)
286 3bc1_A RAS-related protein RAB 51.8 6.6 0.00023 26.4 1.8 12 1-12 22-33 (195)
287 1upt_A ARL1, ADP-ribosylation 51.8 6.7 0.00023 25.8 1.8 12 1-12 18-29 (171)
288 1vma_A Cell division protein F 51.8 10 0.00036 28.5 3.0 17 1-17 115-131 (306)
289 1sq5_A Pantothenate kinase; P- 51.8 6.3 0.00022 29.6 1.8 15 1-15 91-105 (308)
290 3exa_A TRNA delta(2)-isopenten 51.6 6.4 0.00022 30.1 1.7 14 1-14 14-27 (322)
291 3tqc_A Pantothenate kinase; bi 51.5 6.4 0.00022 30.0 1.8 15 1-15 103-117 (321)
292 1wms_A RAB-9, RAB9, RAS-relate 51.5 6.8 0.00023 26.0 1.8 12 1-12 18-29 (177)
293 2bme_A RAB4A, RAS-related prot 51.4 6.8 0.00023 26.3 1.8 13 1-13 21-33 (186)
294 3ihw_A Centg3; RAS, centaurin, 51.3 6.8 0.00023 26.6 1.7 13 1-13 31-43 (184)
295 2g6b_A RAS-related protein RAB 51.3 6.9 0.00024 26.1 1.8 13 1-13 21-33 (180)
296 2y8e_A RAB-protein 6, GH09086P 51.3 6.9 0.00024 25.9 1.8 12 1-12 25-36 (179)
297 2q6t_A DNAB replication FORK h 51.2 26 0.00089 27.7 5.4 25 1-25 211-236 (444)
298 2a9k_A RAS-related protein RAL 51.2 6.9 0.00023 26.2 1.8 12 1-12 29-40 (187)
299 3t1o_A Gliding protein MGLA; G 51.2 6.6 0.00023 26.5 1.7 15 1-15 25-39 (198)
300 3q85_A GTP-binding protein REM 51.1 6.5 0.00022 25.9 1.6 12 1-12 13-24 (169)
301 1rj9_A FTSY, signal recognitio 51.1 12 0.00042 28.1 3.2 24 1-25 113-136 (304)
302 3b85_A Phosphate starvation-in 51.0 5.9 0.0002 28.0 1.4 42 63-108 117-160 (208)
303 2hxs_A RAB-26, RAS-related pro 50.9 6.6 0.00022 26.1 1.6 12 1-12 17-28 (178)
304 2oil_A CATX-8, RAS-related pro 50.8 7 0.00024 26.5 1.8 13 1-13 36-48 (193)
305 2efe_B Small GTP-binding prote 50.5 7.2 0.00024 26.0 1.7 13 1-13 23-35 (181)
306 2ph1_A Nucleotide-binding prot 50.4 12 0.0004 27.2 3.0 25 1-25 30-54 (262)
307 1hyq_A MIND, cell division inh 50.4 12 0.00039 27.1 3.0 25 1-25 14-38 (263)
308 2atv_A RERG, RAS-like estrogen 50.3 7.2 0.00025 26.6 1.8 13 1-13 39-51 (196)
309 2ged_A SR-beta, signal recogni 50.2 7.2 0.00025 26.4 1.8 13 1-13 59-71 (193)
310 3kkq_A RAS-related protein M-R 50.2 7.3 0.00025 26.1 1.8 13 1-13 29-41 (183)
311 1mh1_A RAC1; GTP-binding, GTPa 50.0 7.4 0.00025 26.0 1.8 12 1-12 16-27 (186)
312 2lkc_A Translation initiation 50.0 6.5 0.00022 26.1 1.4 12 1-12 19-30 (178)
313 3clv_A RAB5 protein, putative; 50.0 7.3 0.00025 26.4 1.8 13 1-13 18-30 (208)
314 2ew1_A RAS-related protein RAB 49.9 7.3 0.00025 27.0 1.8 13 1-13 37-49 (201)
315 1m2o_B GTP-binding protein SAR 49.9 7.4 0.00025 26.5 1.8 12 1-12 34-45 (190)
316 4dsu_A GTPase KRAS, isoform 2B 49.7 7.5 0.00026 26.1 1.8 13 1-13 15-27 (189)
317 3q9l_A Septum site-determining 49.7 12 0.00041 26.8 3.0 25 1-25 14-38 (260)
318 3bwd_D RAC-like GTP-binding pr 49.6 7.5 0.00026 25.9 1.8 13 1-13 19-31 (182)
319 1p5z_B DCK, deoxycytidine kina 49.5 3 0.0001 30.4 -0.4 15 1-15 35-49 (263)
320 3pqc_A Probable GTP-binding pr 49.4 6.6 0.00023 26.5 1.4 13 1-13 34-46 (195)
321 3dz8_A RAS-related protein RAB 49.4 7.6 0.00026 26.4 1.8 13 1-13 34-46 (191)
322 3kjh_A CO dehydrogenase/acetyl 49.4 9.9 0.00034 27.0 2.4 25 1-25 11-35 (254)
323 1c9k_A COBU, adenosylcobinamid 49.4 7.2 0.00025 27.0 1.6 21 1-25 10-30 (180)
324 1a7j_A Phosphoribulokinase; tr 49.2 4.5 0.00015 30.3 0.6 15 1-15 16-30 (290)
325 3b9q_A Chloroplast SRP recepto 49.2 11 0.00038 28.3 2.8 15 1-15 111-125 (302)
326 3t5g_A GTP-binding protein RHE 48.9 7.9 0.00027 25.9 1.8 12 1-12 17-28 (181)
327 3k9g_A PF-32 protein; ssgcid, 48.8 15 0.0005 26.6 3.3 24 1-25 39-62 (267)
328 2gf9_A RAS-related protein RAB 48.8 7.9 0.00027 26.2 1.8 13 1-13 33-45 (189)
329 1zd9_A ADP-ribosylation factor 48.7 7.9 0.00027 26.2 1.8 12 1-12 33-44 (188)
330 2cjw_A GTP-binding protein GEM 48.7 7.9 0.00027 26.5 1.8 12 1-12 17-28 (192)
331 1g8f_A Sulfate adenylyltransfe 48.6 7.9 0.00027 31.6 1.9 16 1-16 406-421 (511)
332 1gwn_A RHO-related GTP-binding 48.6 7.9 0.00027 26.9 1.8 13 1-13 39-51 (205)
333 2afh_E Nitrogenase iron protei 48.6 13 0.00043 27.4 3.0 25 1-25 13-37 (289)
334 2a5j_A RAS-related protein RAB 48.6 8 0.00027 26.3 1.8 12 1-12 32-43 (191)
335 2gj8_A MNME, tRNA modification 48.6 7 0.00024 26.2 1.4 13 1-13 15-27 (172)
336 1z06_A RAS-related protein RAB 48.5 8 0.00027 26.1 1.8 12 1-12 31-42 (189)
337 2fg5_A RAB-22B, RAS-related pr 48.4 8 0.00027 26.3 1.8 13 1-13 34-46 (192)
338 3q72_A GTP-binding protein RAD 48.3 7.1 0.00024 25.6 1.4 12 1-12 13-24 (166)
339 3lda_A DNA repair protein RAD5 48.3 15 0.00052 28.8 3.5 25 1-25 189-219 (400)
340 1s96_A Guanylate kinase, GMP k 48.2 8 0.00027 27.5 1.7 24 1-24 27-51 (219)
341 2qi9_C Vitamin B12 import ATP- 48.2 6.7 0.00023 28.6 1.4 41 69-111 152-198 (249)
342 2cxx_A Probable GTP-binding pr 48.1 7.6 0.00026 26.1 1.6 13 1-13 12-24 (190)
343 3oes_A GTPase rhebl1; small GT 48.1 8.1 0.00028 26.5 1.8 13 1-13 35-47 (201)
344 2onk_A Molybdate/tungstate ABC 48.0 7.5 0.00026 28.1 1.6 52 60-111 136-192 (240)
345 1svi_A GTP-binding protein YSX 48.0 7.1 0.00024 26.5 1.4 12 1-12 34-45 (195)
346 1byi_A Dethiobiotin synthase; 47.9 12 0.00042 26.1 2.7 17 1-17 13-29 (224)
347 2ga8_A Hypothetical 39.9 kDa p 47.8 5.6 0.00019 30.9 0.9 18 1-18 35-52 (359)
348 2fh5_B SR-beta, signal recogni 47.8 8.2 0.00028 26.7 1.8 13 1-13 18-30 (214)
349 3reg_A RHO-like small GTPase; 47.7 8.4 0.00029 26.2 1.8 13 1-13 34-46 (194)
350 3tkl_A RAS-related protein RAB 47.5 8.4 0.00029 26.1 1.8 13 1-13 27-39 (196)
351 2h17_A ADP-ribosylation factor 47.5 7.4 0.00025 26.2 1.4 13 1-13 32-44 (181)
352 2gf0_A GTP-binding protein DI- 47.4 8.5 0.00029 26.1 1.8 12 1-12 19-30 (199)
353 1bif_A 6-phosphofructo-2-kinas 47.2 13 0.00044 29.8 3.0 18 1-18 50-67 (469)
354 3fdi_A Uncharacterized protein 47.1 9.7 0.00033 26.6 2.0 15 1-15 17-31 (201)
355 1e2k_A Thymidine kinase; trans 47.1 5.7 0.00019 30.5 0.8 17 1-17 15-31 (331)
356 2bov_A RAla, RAS-related prote 47.0 8.7 0.0003 26.2 1.8 12 1-12 25-36 (206)
357 1vg8_A RAS-related protein RAB 46.8 8.7 0.0003 26.3 1.8 13 1-13 19-31 (207)
358 2pcj_A ABC transporter, lipopr 46.8 6.5 0.00022 28.1 1.1 48 60-109 150-203 (224)
359 1nrj_B SR-beta, signal recogni 46.8 8.7 0.0003 26.7 1.8 13 1-13 23-35 (218)
360 3end_A Light-independent proto 46.8 14 0.00047 27.4 3.0 25 1-25 52-76 (307)
361 3lnc_A Guanylate kinase, GMP k 46.6 5 0.00017 28.5 0.4 14 1-14 38-52 (231)
362 1x3s_A RAS-related protein RAB 46.6 8.9 0.0003 25.9 1.8 13 1-13 26-38 (195)
363 1ypw_A Transitional endoplasmi 46.6 9.8 0.00034 32.9 2.3 18 1-18 522-539 (806)
364 2f6r_A COA synthase, bifunctio 46.3 8.2 0.00028 28.6 1.6 12 1-12 86-97 (281)
365 2p5s_A RAS and EF-hand domain 46.3 9 0.00031 26.2 1.8 12 1-12 39-50 (199)
366 2d2e_A SUFC protein; ABC-ATPas 46.3 8.3 0.00028 28.0 1.6 49 61-111 154-208 (250)
367 1g8p_A Magnesium-chelatase 38 46.2 7.1 0.00024 29.4 1.3 15 1-15 56-70 (350)
368 2atx_A Small GTP binding prote 46.2 9.1 0.00031 26.0 1.8 13 1-13 29-41 (194)
369 2zu0_C Probable ATP-dependent 46.1 8.3 0.00028 28.4 1.6 49 61-111 175-229 (267)
370 1of1_A Thymidine kinase; trans 45.9 7.5 0.00025 30.4 1.3 17 1-17 60-76 (376)
371 2fv8_A H6, RHO-related GTP-bin 45.8 9.3 0.00032 26.4 1.8 12 1-12 36-47 (207)
372 1zbd_A Rabphilin-3A; G protein 45.7 8.1 0.00028 26.4 1.4 13 1-13 19-31 (203)
373 3tif_A Uncharacterized ABC tra 45.6 6.9 0.00024 28.2 1.1 50 60-109 155-209 (235)
374 1ls1_A Signal recognition part 45.6 15 0.00051 27.4 3.0 17 1-17 109-125 (295)
375 2hup_A RAS-related protein RAB 45.2 9.6 0.00033 26.2 1.8 12 1-12 40-51 (201)
376 2vp4_A Deoxynucleoside kinase; 45.1 4.8 0.00016 28.7 0.1 13 1-13 31-43 (230)
377 2px0_A Flagellar biosynthesis 45.0 10 0.00035 28.4 2.0 15 1-15 116-130 (296)
378 3tw8_B RAS-related protein RAB 45.0 8.5 0.00029 25.5 1.4 12 1-12 20-31 (181)
379 1zu4_A FTSY; GTPase, signal re 44.9 15 0.00053 27.8 3.0 24 1-24 116-139 (320)
380 1zj6_A ADP-ribosylation factor 44.9 9.2 0.00031 25.8 1.6 12 1-12 27-38 (187)
381 2fz4_A DNA repair protein RAD2 44.8 80 0.0027 22.3 8.5 14 1-14 119-132 (237)
382 1j8m_F SRP54, signal recogniti 44.6 15 0.0005 27.5 2.8 25 1-25 109-133 (297)
383 2og2_A Putative signal recogni 44.6 14 0.00049 28.5 2.8 15 1-15 168-182 (359)
384 1q3t_A Cytidylate kinase; nucl 44.6 11 0.00036 26.9 1.9 14 1-14 27-40 (236)
385 2bcg_Y Protein YP2, GTP-bindin 44.5 10 0.00034 26.1 1.8 12 1-12 19-30 (206)
386 2gco_A H9, RHO-related GTP-bin 44.5 10 0.00034 26.1 1.8 12 1-12 36-47 (201)
387 1lw7_A Transcriptional regulat 44.4 8.3 0.00028 29.7 1.4 15 1-15 181-195 (365)
388 2oze_A ORF delta'; para, walke 44.3 16 0.00055 26.9 3.0 25 1-25 48-72 (298)
389 2o52_A RAS-related protein RAB 44.3 9.5 0.00032 26.2 1.6 12 1-12 36-47 (200)
390 2xj4_A MIPZ; replication, cell 44.1 16 0.00056 26.8 3.0 25 1-25 16-40 (286)
391 1pzn_A RAD51, DNA repair and r 43.9 9.2 0.00032 29.4 1.6 26 1-26 142-173 (349)
392 1tue_A Replication protein E1; 43.9 10 0.00034 27.1 1.6 16 1-16 69-84 (212)
393 2cbz_A Multidrug resistance-as 43.9 7.6 0.00026 28.0 1.1 50 61-110 138-193 (237)
394 2g3y_A GTP-binding protein GEM 43.8 9.7 0.00033 26.8 1.6 12 1-12 48-59 (211)
395 3e70_C DPA, signal recognition 43.8 15 0.00052 28.0 2.8 16 1-16 140-155 (328)
396 3q3j_B RHO-related GTP-binding 43.7 10 0.00035 26.4 1.8 13 1-13 38-50 (214)
397 1b0u_A Histidine permease; ABC 43.7 7.7 0.00026 28.5 1.1 49 61-111 164-218 (262)
398 1sgw_A Putative ABC transporte 43.7 7.8 0.00027 27.5 1.1 46 60-107 143-194 (214)
399 2j0v_A RAC-like GTP-binding pr 43.6 10 0.00036 26.1 1.8 12 1-12 20-31 (212)
400 3eph_A TRNA isopentenyltransfe 43.6 11 0.00037 29.8 1.9 14 1-14 13-26 (409)
401 3kta_A Chromosome segregation 43.5 10 0.00034 25.6 1.6 14 1-14 37-50 (182)
402 3zvl_A Bifunctional polynucleo 43.5 8.3 0.00028 30.4 1.3 14 1-14 269-282 (416)
403 1ksh_A ARF-like protein 2; sma 43.4 7.4 0.00025 26.2 0.9 13 1-13 29-41 (186)
404 3cph_A RAS-related protein SEC 43.3 11 0.00036 26.0 1.8 12 1-12 31-42 (213)
405 1ji0_A ABC transporter; ATP bi 43.3 7.9 0.00027 27.9 1.1 49 60-110 149-203 (240)
406 2axn_A 6-phosphofructo-2-kinas 43.3 16 0.00054 29.8 3.0 18 1-18 46-63 (520)
407 3e2i_A Thymidine kinase; Zn-bi 43.2 19 0.00064 25.8 3.0 20 59-78 92-111 (219)
408 2pjz_A Hypothetical protein ST 43.2 9.9 0.00034 28.0 1.6 48 61-110 139-189 (263)
409 1g6h_A High-affinity branched- 42.8 8.1 0.00028 28.2 1.1 48 61-110 164-217 (257)
410 2h92_A Cytidylate kinase; ross 42.7 11 0.00037 26.3 1.7 14 1-14 14-27 (219)
411 1fzq_A ADP-ribosylation factor 42.5 9.8 0.00034 25.6 1.4 13 1-13 27-39 (181)
412 2olj_A Amino acid ABC transpor 42.3 8.3 0.00028 28.4 1.1 50 60-111 169-224 (263)
413 3gfo_A Cobalt import ATP-bindi 42.3 8.3 0.00028 28.6 1.1 53 59-111 152-209 (275)
414 2pze_A Cystic fibrosis transme 42.3 8.4 0.00029 27.6 1.1 59 60-120 140-202 (229)
415 3sr0_A Adenylate kinase; phosp 42.2 12 0.00042 26.3 1.9 14 1-14 11-24 (206)
416 4g1u_C Hemin import ATP-bindin 42.2 8.4 0.00029 28.4 1.1 43 68-111 165-213 (266)
417 3k1j_A LON protease, ATP-depen 42.1 17 0.00059 30.1 3.1 18 1-18 71-88 (604)
418 3llu_A RAS-related GTP-binding 42.0 9.4 0.00032 26.1 1.3 13 1-13 31-43 (196)
419 3zq6_A Putative arsenical pump 42.0 18 0.00062 27.3 3.0 17 1-17 25-41 (324)
420 2ff7_A Alpha-hemolysin translo 42.0 8.5 0.00029 27.9 1.1 55 60-120 155-216 (247)
421 1wcv_1 SOJ, segregation protei 41.9 12 0.00042 26.9 2.0 25 1-25 18-42 (257)
422 3cbq_A GTP-binding protein REM 41.9 8 0.00027 26.5 0.9 12 1-12 34-45 (195)
423 4gzl_A RAS-related C3 botulinu 41.8 12 0.0004 25.9 1.8 12 1-12 41-52 (204)
424 3sop_A Neuronal-specific septi 41.8 11 0.00039 27.7 1.8 13 1-13 13-25 (270)
425 3tqf_A HPR(Ser) kinase; transf 41.8 12 0.0004 26.0 1.7 13 1-13 27-39 (181)
426 3tmk_A Thymidylate kinase; pho 41.7 13 0.00045 26.4 2.0 16 1-16 16-31 (216)
427 2q3h_A RAS homolog gene family 41.7 11 0.00038 25.7 1.6 12 1-12 31-42 (201)
428 1vpl_A ABC transporter, ATP-bi 41.7 8.7 0.0003 28.1 1.1 49 60-111 156-211 (256)
429 1mv5_A LMRA, multidrug resista 41.6 8.7 0.0003 27.8 1.1 54 61-120 150-210 (243)
430 1f6b_A SAR1; gtpases, N-termin 41.5 10 0.00035 26.0 1.4 12 1-12 36-47 (198)
431 4bas_A ADP-ribosylation factor 41.1 11 0.00036 25.6 1.4 12 1-12 28-39 (199)
432 2ihy_A ABC transporter, ATP-bi 41.0 8.9 0.00031 28.5 1.1 21 60-80 171-191 (279)
433 3cpj_B GTP-binding protein YPT 40.9 12 0.00042 26.1 1.8 12 1-12 24-35 (223)
434 2j1l_A RHO-related GTP-binding 40.8 11 0.00039 26.1 1.6 12 1-12 45-56 (214)
435 2il1_A RAB12; G-protein, GDP, 40.8 11 0.00037 25.7 1.4 12 1-12 37-48 (192)
436 2f7s_A C25KG, RAS-related prot 40.8 11 0.00039 26.0 1.6 12 1-12 36-47 (217)
437 2yz2_A Putative ABC transporte 40.7 9.1 0.00031 28.1 1.1 52 60-111 148-203 (266)
438 2yhs_A FTSY, cell division pro 40.2 18 0.00062 29.4 2.8 24 1-25 304-327 (503)
439 2ghi_A Transport protein; mult 40.0 9.5 0.00033 27.9 1.1 55 61-120 166-226 (260)
440 3gmt_A Adenylate kinase; ssgci 39.5 14 0.00049 26.6 1.9 14 1-14 19-32 (230)
441 3fkq_A NTRC-like two-domain pr 39.4 17 0.00059 28.0 2.5 25 1-25 155-179 (373)
442 3fvq_A Fe(3+) IONS import ATP- 39.4 12 0.00041 29.0 1.6 52 59-112 147-205 (359)
443 2b6h_A ADP-ribosylation factor 39.3 12 0.0004 25.5 1.4 12 1-12 40-51 (192)
444 1moz_A ARL1, ADP-ribosylation 39.1 9.5 0.00032 25.5 0.9 12 1-12 29-40 (183)
445 2qnr_A Septin-2, protein NEDD5 38.8 13 0.00043 27.9 1.6 12 1-12 29-40 (301)
446 3umf_A Adenylate kinase; rossm 38.8 15 0.00052 26.1 2.0 14 1-14 40-53 (217)
447 1xx6_A Thymidine kinase; NESG, 38.7 22 0.00075 24.7 2.8 23 1-23 19-42 (191)
448 2nq2_C Hypothetical ABC transp 38.7 10 0.00035 27.6 1.1 51 60-111 138-194 (253)
449 1z47_A CYSA, putative ABC-tran 38.1 13 0.00044 28.8 1.6 51 60-112 155-212 (355)
450 2qu8_A Putative nucleolar GTP- 38.0 10 0.00034 26.7 0.9 13 1-13 40-52 (228)
451 2ewv_A Twitching motility prot 38.0 17 0.0006 28.1 2.4 48 57-107 198-245 (372)
452 2fu5_C RAS-related protein RAB 38.0 7.3 0.00025 26.1 0.2 12 1-12 19-30 (183)
453 3kl4_A SRP54, signal recogniti 37.9 22 0.00076 28.3 3.0 17 1-17 108-124 (433)
454 4aby_A DNA repair protein RECN 37.5 35 0.0012 26.4 4.1 49 70-120 317-368 (415)
455 3hdt_A Putative kinase; struct 37.2 15 0.00052 26.2 1.7 15 1-15 25-39 (223)
456 1osn_A Thymidine kinase, VZV-T 37.0 13 0.00044 28.6 1.4 17 1-17 23-40 (341)
457 3iqw_A Tail-anchored protein t 36.9 30 0.001 26.3 3.5 17 1-17 27-43 (334)
458 3c5h_A Glucocorticoid receptor 36.5 15 0.00051 26.6 1.7 12 1-12 39-50 (255)
459 1v54_E Cytochrome C oxidase po 36.4 79 0.0027 19.8 6.3 47 141-187 42-90 (109)
460 2obl_A ESCN; ATPase, hydrolase 36.4 15 0.00052 28.2 1.8 16 1-16 82-97 (347)
461 2npi_A Protein CLP1; CLP1-PCF1 36.4 15 0.00051 29.5 1.8 14 1-14 149-162 (460)
462 3k53_A Ferrous iron transport 36.4 14 0.0005 26.9 1.6 13 1-13 14-26 (271)
463 2it1_A 362AA long hypothetical 36.4 14 0.00049 28.6 1.6 52 60-112 143-200 (362)
464 2h57_A ADP-ribosylation factor 36.3 11 0.00038 25.4 0.9 13 1-13 32-44 (190)
465 1g29_1 MALK, maltose transport 36.3 14 0.00049 28.7 1.6 51 60-112 149-206 (372)
466 2v9p_A Replication protein E1; 36.2 16 0.00053 27.6 1.8 14 1-14 137-150 (305)
467 2v3c_C SRP54, signal recogniti 36.1 15 0.0005 29.3 1.6 15 1-15 110-124 (432)
468 1svm_A Large T antigen; AAA+ f 36.0 15 0.00053 28.6 1.8 14 1-14 180-193 (377)
469 2yyz_A Sugar ABC transporter, 36.0 15 0.0005 28.5 1.6 51 60-112 143-200 (359)
470 3ug7_A Arsenical pump-driving 36.0 26 0.0009 26.7 3.0 17 1-17 37-53 (349)
471 3cr8_A Sulfate adenylyltranfer 35.8 11 0.00038 31.0 0.9 16 1-16 380-395 (552)
472 1x6v_B Bifunctional 3'-phospho 35.7 16 0.00056 30.6 1.9 15 1-15 63-77 (630)
473 1v43_A Sugar-binding transport 35.6 15 0.00051 28.6 1.6 54 58-112 149-208 (372)
474 3rlf_A Maltose/maltodextrin im 35.6 15 0.00051 28.7 1.6 52 61-112 144-200 (381)
475 1nij_A Hypothetical protein YJ 35.6 15 0.0005 27.7 1.5 13 1-13 15-27 (318)
476 2x77_A ADP-ribosylation factor 35.3 12 0.0004 25.2 0.9 12 1-12 33-44 (189)
477 3a1s_A Iron(II) transport prot 35.3 15 0.0005 26.8 1.4 12 1-12 16-27 (258)
478 2ffh_A Protein (FFH); SRP54, s 35.1 31 0.0011 27.3 3.4 17 1-17 109-125 (425)
479 4i1u_A Dephospho-COA kinase; s 34.9 17 0.0006 25.7 1.7 12 1-12 20-31 (210)
480 1m8p_A Sulfate adenylyltransfe 34.8 17 0.00059 30.0 1.9 15 1-15 407-421 (573)
481 2woo_A ATPase GET3; tail-ancho 34.5 34 0.0012 25.8 3.5 17 1-17 30-46 (329)
482 3p32_A Probable GTPase RV1496/ 34.5 35 0.0012 26.0 3.6 15 1-15 90-104 (355)
483 3bfv_A CAPA1, CAPB2, membrane 34.2 29 0.001 25.4 3.0 25 1-25 94-118 (271)
484 1tf7_A KAIC; homohexamer, hexa 34.1 32 0.0011 27.9 3.4 25 1-25 292-316 (525)
485 3lxx_A GTPase IMAP family memb 34.0 17 0.00058 25.8 1.6 12 1-12 40-51 (239)
486 1ega_A Protein (GTP-binding pr 34.0 17 0.00057 27.2 1.6 13 1-13 19-31 (301)
487 2bbs_A Cystic fibrosis transme 33.9 13 0.00046 27.7 1.1 51 60-110 169-223 (290)
488 2gza_A Type IV secretion syste 33.6 16 0.00053 28.2 1.4 25 1-26 186-210 (361)
489 3cmw_A Protein RECA, recombina 33.4 24 0.0008 33.4 2.7 25 1-25 394-418 (1706)
490 3la6_A Tyrosine-protein kinase 33.4 37 0.0013 25.1 3.4 25 1-25 104-128 (286)
491 3b1v_A Ferrous iron uptake tra 33.1 18 0.0006 26.7 1.6 12 1-12 14-25 (272)
492 2xxa_A Signal recognition part 33.0 30 0.001 27.5 3.0 17 1-17 111-127 (433)
493 3gd7_A Fusion complex of cysti 33.0 17 0.00059 28.4 1.6 47 60-109 165-217 (390)
494 3cmu_A Protein RECA, recombina 32.9 28 0.00097 33.5 3.2 25 1-25 394-418 (2050)
495 3qxc_A Dethiobiotin synthetase 32.8 30 0.001 25.0 2.8 23 1-23 33-56 (242)
496 2yc2_C IFT27, small RAB-relate 32.8 9.2 0.00032 26.1 0.0 13 1-13 31-43 (208)
497 3tui_C Methionine import ATP-b 32.7 18 0.00061 28.1 1.6 53 58-111 171-229 (366)
498 1pui_A ENGB, probable GTP-bind 32.7 8.8 0.0003 26.4 -0.1 12 1-12 37-48 (210)
499 3cio_A ETK, tyrosine-protein k 32.6 32 0.0011 25.6 3.0 25 1-25 116-140 (299)
500 2gks_A Bifunctional SAT/APS ki 32.3 27 0.00093 28.6 2.7 15 1-15 383-397 (546)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=1.2e-28 Score=203.98 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=135.0
Q ss_pred CchhHHHHHHHH----HhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCC--C---cC------chHHHHhhc
Q 039644 1 IGKTAIARAIFD----KISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKN--V---MP------YIDLNFRRL 65 (192)
Q Consensus 1 iGKTtLa~~~~~----~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~---~~------~~~~l~~~l 65 (192)
+||||||+++|+ +++.+|++++|++ ++..+. ++..+++..++.++..... . .+ ....++..+
T Consensus 163 vGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L 239 (549)
T 2a5y_B 163 SGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL 239 (549)
T ss_dssp SSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC--CCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHH
Confidence 799999999996 6899999999997 544211 3688999999999986532 1 11 368889999
Q ss_pred CCc-eEEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHhhcC-CCceEecCCCCHHHHHHHHHHhhcCCCCCC
Q 039644 66 SRM-KVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWG-VSKIYEMEALEYHHALELFSQHAFKRNHPD 143 (192)
Q Consensus 66 ~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~-~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~ 143 (192)
.++ ||||||||+|+..++ .+.. .+||+||||||++.++..++ ....+++++|+.++|++||.+.++.... .
T Consensus 240 ~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~ 312 (549)
T 2a5y_B 240 IDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-G 312 (549)
T ss_dssp TTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---
T ss_pred cCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-c
Confidence 996 999999999998765 2221 27899999999999988775 4467999999999999999999876543 4
Q ss_pred ccHHHHHHHHHHHhCCCchHHHHHHHHhccCC
Q 039644 144 VGYEKLSSNVTKYAQGIPLALKVLSCFLHKRE 175 (192)
Q Consensus 144 ~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~ 175 (192)
+.+.+.+.+|+++|+|+||||+++|+.|+.+.
T Consensus 313 ~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~ 344 (549)
T 2a5y_B 313 EKEEDVLNKTIELSSGNPATLMMFFKSCEPKT 344 (549)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHhccch
Confidence 67788999999999999999999999998874
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=1.6e-24 Score=192.88 Aligned_cols=176 Identities=21% Similarity=0.304 Sum_probs=132.2
Q ss_pred CchhHHHHHHHHH---hhCCCc-ceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--------cCchHHHHhhcCCc
Q 039644 1 IGKTAIARAIFDK---ISGDFE-CSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--------MPYIDLNFRRLSRM 68 (192)
Q Consensus 1 iGKTtLa~~~~~~---~~~~F~-~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~l~~~l~~~ 68 (192)
+||||||++++++ ...+|. .++|+. ++.... ......+..++..+...... .+....++..+.++
T Consensus 158 ~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 234 (1249)
T 3sfz_A 158 CGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQDK--SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK 234 (1249)
T ss_dssp SSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCCH--HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcCc--hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc
Confidence 7999999999996 456675 555877 433111 23444556666666544321 11666777777766
Q ss_pred --eEEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHhh-cCCCceEecCC-CCHHHHHHHHHHhhcCCCCCCc
Q 039644 69 --KVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRN-WGVSKIYEMEA-LEYHHALELFSQHAFKRNHPDV 144 (192)
Q Consensus 69 --~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~-~~~~~~~~l~~-l~~~ea~~lf~~~~~~~~~~~~ 144 (192)
||||||||+|+..+|..+ ++|++||||||++.++.. .+....+.+++ |+.++|++||...++... +
T Consensus 235 ~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~ 304 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---E 304 (1249)
T ss_dssp SCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---T
T ss_pred CCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---h
Confidence 999999999998776654 578999999999988854 35667899996 999999999998874332 3
Q ss_pred cHHHHHHHHHHHhCCCchHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 039644 145 GYEKLSSNVTKYAQGIPLALKVLSCFLHKREKEVWESAIDKLQRIL 190 (192)
Q Consensus 145 ~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~ 190 (192)
...+.+.+|+++|+|+||||+++|++|+.+. ..|..+++.+.+..
T Consensus 305 ~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 305 DLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp TCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred hCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence 3445688999999999999999999999875 57999998887543
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.89 E-value=1e-22 Score=175.18 Aligned_cols=160 Identities=17% Similarity=0.151 Sum_probs=116.2
Q ss_pred CchhHHHHHHHH--HhhCCCcc-eEEEeeccccccCCCChHHHHHHHHHHHhcCC----CC--c--C-------chHHHH
Q 039644 1 IGKTAIARAIFD--KISGDFEC-SCFLENVREESQRPGGLACLRQKLLSNILKDK----NV--M--P-------YIDLNF 62 (192)
Q Consensus 1 iGKTtLa~~~~~--~~~~~F~~-~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~--~--~-------~~~~l~ 62 (192)
+||||||+++++ +++.+|+. ++|++ ++.. ++...+...++..+.... .. . + ....++
T Consensus 161 IGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~~----~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr 235 (1221)
T 1vt4_I 161 SGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNC----NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235 (1221)
T ss_dssp SSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCCS----SSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCCC----CCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHH
Confidence 799999999997 47889986 88988 4432 566677777666433211 00 0 0 345566
Q ss_pred hhc---CCceEEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecC------CCCHHHHHHHHH
Q 039644 63 RRL---SRMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEME------ALEYHHALELFS 133 (192)
Q Consensus 63 ~~l---~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~------~l~~~ea~~lf~ 133 (192)
..+ .++|+||||||+|+...|+.+. +||+||||||++.++..+.....+.++ +|+.+||++||.
T Consensus 236 ~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~ 308 (1221)
T 1vt4_I 236 RLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308 (1221)
T ss_dssp HHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHH
T ss_pred HHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHH
Confidence 654 6899999999999988888763 689999999999988644333345566 899999999999
Q ss_pred HhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccC--CHHHHHH
Q 039644 134 QHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCFLHKR--EKEVWES 181 (192)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~--~~~~w~~ 181 (192)
..... . . .+...++ |+|+||||.++|+.|+.+ ....|+.
T Consensus 309 ~~~g~-~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 309 KYLDC-R--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHCC-C--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred HHcCC-C--H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 88422 2 1 1223333 999999999999999987 3778864
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=165.97 Aligned_cols=171 Identities=22% Similarity=0.282 Sum_probs=121.3
Q ss_pred CchhHHHHHHHHHh---hCCCc-ceEEEeeccccccCCCChHHHHHHH---HHHHhcCCC---C--c---CchHHHHhhc
Q 039644 1 IGKTAIARAIFDKI---SGDFE-CSCFLENVREESQRPGGLACLRQKL---LSNILKDKN---V--M---PYIDLNFRRL 65 (192)
Q Consensus 1 iGKTtLa~~~~~~~---~~~F~-~~~wv~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~---~--~---~~~~~l~~~l 65 (192)
+||||||.+++++. ..+|+ .++|++. +. .+...+...+ ...+..... . . .....+...+
T Consensus 158 iGKTtLa~~~~~~~~~~~~~f~~~v~wv~~-~~-----~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 231 (591)
T 1z6t_A 158 CGKSVLAAEAVRDHSLLEGCFPGGVHWVSV-GK-----QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILM 231 (591)
T ss_dssp SSHHHHHHHHHCCHHHHHHHCTTCEEEEEE-ES-----CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhchhHHHhhCCCceEEEEC-CC-----CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHH
Confidence 79999999999853 77895 7888873 33 1223333333 334432111 1 1 1455666666
Q ss_pred CC--ceEEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEec---CCCCHHHHHHHHHHhhcCCC
Q 039644 66 SR--MKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM---EALEYHHALELFSQHAFKRN 140 (192)
Q Consensus 66 ~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l---~~l~~~ea~~lf~~~~~~~~ 140 (192)
.+ +++||||||+|+...++.+ +++++||||||...+..... ...+.+ ++|+.+++++||...++..
T Consensus 232 ~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~- 302 (591)
T 1z6t_A 232 LRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK- 302 (591)
T ss_dssp HHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-
T ss_pred ccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-
Confidence 54 7899999999987665543 56889999999998776543 233443 5899999999999988542
Q ss_pred CCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 039644 141 HPDVGYEKLSSNVTKYAQGIPLALKVLSCFLHKREKEVWESAIDKLQRI 189 (192)
Q Consensus 141 ~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~ 189 (192)
.....+.+.+|++.|+|+||||.++|++|+.. ...|..+++.+.+.
T Consensus 303 --~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~-~~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 303 --KADLPEQAHSIIKECKGSPLVVSLIGALLRDF-PNRWEYYLKQLQNK 348 (591)
T ss_dssp --GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS-TTCHHHHHHHHHSC
T ss_pred --cccccHHHHHHHHHhCCCcHHHHHHHHHHhcC-chhHHHHHHHHHHh
Confidence 22234567899999999999999999999886 34688888888754
No 5
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.16 E-value=5.5e-10 Score=86.90 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=64.9
Q ss_pred ceEEEEEeCCCCch-----hHHHhhccCCCCCCCceEEEEecchhHHhh----------c-CC-CceEecCCCCHHHHHH
Q 039644 68 MKVLIVFDDVTCFS-----QLESLMGSLDWLTPVSRIILTTRNKQVLRN----------W-GV-SKIYEMEALEYHHALE 130 (192)
Q Consensus 68 ~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~iivTtR~~~~~~~----------~-~~-~~~~~l~~l~~~ea~~ 130 (192)
++.+|||||++... ++..+...+.....+.++|+|++....... . +. ...+.+.+|+.+++.+
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 49999999997532 222221111111236789999987653221 1 11 3578999999999999
Q ss_pred HHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 039644 131 LFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCFLH 172 (192)
Q Consensus 131 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 172 (192)
++.............. ..+.+.++|+|+++..++..+.
T Consensus 217 ~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 217 FLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHc
Confidence 9987542111111111 6899999999999999987654
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.14 E-value=7.8e-10 Score=87.88 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=98.8
Q ss_pred CchhHHHHHHHHHhhCC-----Cc-ceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--c---CchHHHHhhcC--C
Q 039644 1 IGKTAIARAIFDKISGD-----FE-CSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--M---PYIDLNFRRLS--R 67 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-----F~-~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~---~~~~~l~~~l~--~ 67 (192)
+|||+||+.+++..... |. ..+|+..... .+...++..++..+....+. . +....+...+. +
T Consensus 63 ~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 137 (412)
T 1w5s_A 63 IGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA-----PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVEN 137 (412)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC-----CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC-----CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 69999999999976542 22 2456652222 57778888888888654321 1 13445555553 6
Q ss_pred ceEEEEEeCCCCc--------hhHHHhhccC---CCCC--CCceEEEEecchhHHhhc---------CCCceEecCCCCH
Q 039644 68 MKVLIVFDDVTCF--------SQLESLMGSL---DWLT--PVSRIILTTRNKQVLRNW---------GVSKIYEMEALEY 125 (192)
Q Consensus 68 ~~~LlVlDdv~~~--------~~~~~l~~~~---~~~~--~~~~iivTtR~~~~~~~~---------~~~~~~~l~~l~~ 125 (192)
++++|||||++.. ..+..+...+ +..+ ....+|+||+........ .....+.+++++.
T Consensus 138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 7999999999753 2233332222 1112 344578788765432111 1123399999999
Q ss_pred HHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhC------CCchHHHHHH
Q 039644 126 HHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQ------GIPLALKVLS 168 (192)
Q Consensus 126 ~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Plai~~~~ 168 (192)
+++.++|.........+.....+....+.+.++ |.|..+..+.
T Consensus 218 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 218 RELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVAL 266 (412)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 999999976542111111223456778899999 9997555443
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.11 E-value=5.2e-10 Score=86.86 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=95.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccc--cCCCChHHHHHHHHHHHhc----------------CC-----CC-cC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREES--QRPGGLACLRQKLLSNILK----------------DK-----NV-MP 56 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~~~~~~l~~~~~~----------------~~-----~~-~~ 56 (192)
+|||+|+++++++.. .+|++. .... ..+.....+...+...+.. .. .. .+
T Consensus 42 ~GKT~Ll~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (350)
T 2qen_A 42 VGKSSLLRAFLNERP-----GILIDC-RELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLRE 115 (350)
T ss_dssp SSHHHHHHHHHHHSS-----EEEEEH-HHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHH
T ss_pred CCHHHHHHHHHHHcC-----cEEEEe-ecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHH
Confidence 699999999998752 567662 2211 0112445555555544321 00 01 11
Q ss_pred chHHHHhhcCC-ceEEEEEeCCCCchh---------HHHhhccCCCCCCCceEEEEecchhHHhh----------c-C-C
Q 039644 57 YIDLNFRRLSR-MKVLIVFDDVTCFSQ---------LESLMGSLDWLTPVSRIILTTRNKQVLRN----------W-G-V 114 (192)
Q Consensus 57 ~~~~l~~~l~~-~~~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~iivTtR~~~~~~~----------~-~-~ 114 (192)
....+...... ++.+|||||++.... +..+...... ..+.++|+|++....... . + .
T Consensus 116 ~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~ 194 (350)
T 2qen_A 116 VFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRI 194 (350)
T ss_dssp HHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCC
T ss_pred HHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCc
Confidence 33334333332 389999999986432 2222221111 246789999887643211 0 1 1
Q ss_pred CceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 039644 115 SKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCFL 171 (192)
Q Consensus 115 ~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 171 (192)
...+.+.+|+.+|+.+++.......... ...+.+..+.+.++|+|+++..++..+
T Consensus 195 ~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 195 AGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3479999999999999998754222211 123567789999999999999988654
No 8
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.97 E-value=2e-08 Score=73.51 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=70.4
Q ss_pred CceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecchhHHhh--cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQVLRN--WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~--~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++.+||+||++.. ..++.+...+.....+..+|+||+....... ......+.+++++.++..+++...+.....
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~- 203 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 203 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-
Confidence 46799999999753 3455555554444567788888876442211 133468999999999999999877643221
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKVLSCF 170 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~~~~~ 170 (192)
....+....+++.++|.|..+..+...
T Consensus 204 -~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 204 -AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp -CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 122455778999999999998877653
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.96 E-value=4.2e-08 Score=77.16 Aligned_cols=177 Identities=16% Similarity=0.124 Sum_probs=104.6
Q ss_pred CchhHHHHHHHHHhhCC--------CcceEEEeeccccccCCC-ChHHHHHHHHHHHhcCCCC-c-----CchHHHHhhc
Q 039644 1 IGKTAIARAIFDKISGD--------FECSCFLENVREESQRPG-GLACLRQKLLSNILKDKNV-M-----PYIDLNFRRL 65 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~--------F~~~~wv~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~-~-----~~~~~l~~~l 65 (192)
+|||+||+.+++.+... ....+|+..... . +...++..++..+.+.... . +....+...+
T Consensus 56 ~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l 130 (384)
T 2qby_B 56 TGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV-----GGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT 130 (384)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH-----CSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC-----CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh
Confidence 69999999999976433 223455552221 3 6677888888887433222 1 1456667777
Q ss_pred CCceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhh------cCCCceEecCCCCHHHHHHHH
Q 039644 66 SRMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRN------WGVSKIYEMEALEYHHALELF 132 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~------~~~~~~~~l~~l~~~ea~~lf 132 (192)
...+.+||||+++.... +..+.... .+..+|+||+....... ......+.+++++.++..+++
T Consensus 131 ~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il 206 (384)
T 2qby_B 131 RNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFIL 206 (384)
T ss_dssp SSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHH
T ss_pred ccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHH
Confidence 76666999999975432 23333222 66788888886531111 111238999999999999999
Q ss_pred HHhhcCCCCCCccHHHHHHHHHHHhC---CCch-HHHHHHHHh--c-c-C--CHHHHHHHHHHH
Q 039644 133 SQHAFKRNHPDVGYEKLSSNVTKYAQ---GIPL-ALKVLSCFL--H-K-R--EKEVWESAIDKL 186 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~l--~-~-~--~~~~w~~~l~~l 186 (192)
...+........-..+....+++.++ |.|. |+.++-... . + . +.+.+..++++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 207 SKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 98753111111112234556777777 8877 443333222 1 1 1 266666666554
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.79 E-value=1.5e-07 Score=67.96 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=86.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEee-ccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLEN-VREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+|||+||+.+++.+........++.. .+. . .....+. ..+........ ....++.+||+||++.
T Consensus 49 ~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~-~~~~~~~~~~~----------~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 49 TGKTATAIALARDLFGENWRDNFIEMNASD---E-RGIDVVR-HKIKEFARTAP----------IGGAPFKIIFLDEADA 113 (226)
T ss_dssp SSHHHHHHHHHHHHHGGGGGGGEEEEETTC---T-TCHHHHH-HHHHHHHTSCC----------STTCSCEEEEEETGGG
T ss_pred CCHHHHHHHHHHHHhccccccceEEecccc---c-cChHHHH-HHHHHHhcccC----------CCccCceEEEEeChhh
Confidence 69999999999976433322233321 111 0 2222222 22222211100 1135688999999986
Q ss_pred ch--hHHHhhccCCCCCCCceEEEEecchhHHhh--cCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Q 039644 80 FS--QLESLMGSLDWLTPVSRIILTTRNKQVLRN--WGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTK 155 (192)
Q Consensus 80 ~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~~~--~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~ 155 (192)
.. ..+.+...+.....++.+|+||+....... ......+.+.+++.++..+++...+..... ....+....+++
T Consensus 114 l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~ 191 (226)
T 2chg_A 114 LTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIY 191 (226)
T ss_dssp SCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHH
Confidence 42 344444444334556788888876532111 123347999999999999998876632111 122455677889
Q ss_pred HhCCCchHHHHHH
Q 039644 156 YAQGIPLALKVLS 168 (192)
Q Consensus 156 ~~~g~Plai~~~~ 168 (192)
.++|.|..+..+.
T Consensus 192 ~~~g~~r~l~~~l 204 (226)
T 2chg_A 192 ISGGDFRKAINAL 204 (226)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcCCCHHHHHHHH
Confidence 9999999654443
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=6.4e-08 Score=75.90 Aligned_cols=159 Identities=14% Similarity=0.121 Sum_probs=90.8
Q ss_pred CchhHHHHHHHHHhhCCC---cceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--cC---chHHHHhhcC--CceE
Q 039644 1 IGKTAIARAIFDKISGDF---ECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--MP---YIDLNFRRLS--RMKV 70 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F---~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~---~~~~l~~~l~--~~~~ 70 (192)
+||||||+.+++.+...+ ...+|+..... .....+...++..+....+. .. ....+...+. +++.
T Consensus 56 ~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 130 (386)
T 2qby_A 56 TGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI-----DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQV 130 (386)
T ss_dssp SSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH-----CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCE
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEECCCC-----CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeE
Confidence 699999999999876543 23456652221 35566666766665432211 11 3344444443 4589
Q ss_pred EEEEeCCCCc------hhHHHhhccCCC-CCCCceEEEEecchhHHhhc------C-CCceEecCCCCHHHHHHHHHHhh
Q 039644 71 LIVFDDVTCF------SQLESLMGSLDW-LTPVSRIILTTRNKQVLRNW------G-VSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 71 LlVlDdv~~~------~~~~~l~~~~~~-~~~~~~iivTtR~~~~~~~~------~-~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
+||||+++.. ..+..+...+.. ...+..+|++|+........ . ....+.+++++.++..+++...+
T Consensus 131 vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 131 VIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp EEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred EEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 9999999753 223333322211 13455678888765432221 1 12579999999999999998754
Q ss_pred cCCCCCCccHHHHHHHHHHHhC---CCchHH
Q 039644 137 FKRNHPDVGYEKLSSNVTKYAQ---GIPLAL 164 (192)
Q Consensus 137 ~~~~~~~~~~~~~~~~i~~~~~---g~Plai 164 (192)
...........+....+.+.++ |.|..+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 211 QMAFKPGVLPDNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp HHHBCSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HhhccCCCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 2111111222344556666666 998843
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.69 E-value=1.8e-07 Score=73.45 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=90.7
Q ss_pred CchhHHHHHHHHHhhCCC------cceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--cC---chHHHHhhc--CC
Q 039644 1 IGKTAIARAIFDKISGDF------ECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--MP---YIDLNFRRL--SR 67 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~---~~~~l~~~l--~~ 67 (192)
+|||+||+.+++.....+ ...+|+..... .+...++..++..+....+. .. ....+...+ .+
T Consensus 55 ~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 129 (387)
T 2v1u_A 55 TGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR-----ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLR 129 (387)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS-----CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC-----CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 699999999999764321 23455552221 56778888888888553322 11 344555555 34
Q ss_pred ceEEEEEeCCCCchh-------HHHhhccCCCC--CCCceEEEEecchhHHhhc-----C-C-CceEecCCCCHHHHHHH
Q 039644 68 MKVLIVFDDVTCFSQ-------LESLMGSLDWL--TPVSRIILTTRNKQVLRNW-----G-V-SKIYEMEALEYHHALEL 131 (192)
Q Consensus 68 ~~~LlVlDdv~~~~~-------~~~l~~~~~~~--~~~~~iivTtR~~~~~~~~-----~-~-~~~~~l~~l~~~ea~~l 131 (192)
++.+|+||+++.... +..+....... ..+..+|.+|+........ . . ...+.+++++.++..++
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~i 209 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDI 209 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHH
Confidence 689999999985431 22222222211 3456777777765221111 1 1 24789999999999999
Q ss_pred HHHhhcCCCCCCccHHHHHHHHHHHhC---CCch
Q 039644 132 FSQHAFKRNHPDVGYEKLSSNVTKYAQ---GIPL 162 (192)
Q Consensus 132 f~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl 162 (192)
+...+...........+....+.+.++ |.|.
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 210 LETRAEEAFNPGVLDPDVVPLCAALAAREHGDAR 243 (387)
T ss_dssp HHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHH
Confidence 987753200011111233456777777 9994
No 13
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.66 E-value=6.9e-07 Score=70.21 Aligned_cols=162 Identities=10% Similarity=0.120 Sum_probs=98.5
Q ss_pred CchhHHHHHHHHHhhCCC-cceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--cC---chHHHHhhc--CCceEEE
Q 039644 1 IGKTAIARAIFDKISGDF-ECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--MP---YIDLNFRRL--SRMKVLI 72 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~---~~~~l~~~l--~~~~~Ll 72 (192)
+|||||++.++....... ...+++.. ... .+...+...++..+....+. .. ....+...+ .+++.+|
T Consensus 55 ~GKTtl~~~l~~~~~~~~~~~~~~i~~-~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl 129 (389)
T 1fnn_A 55 TGKTVTLRKLWELYKDKTTARFVYING-FIY----RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFL 129 (389)
T ss_dssp SSHHHHHHHHHHHHTTSCCCEEEEEET-TTC----CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHhhhcCeeEEEEeC-ccC----CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 699999999999876542 23455552 221 45677888888777543222 11 333444444 3568999
Q ss_pred EEeCCCCc--hhHHHhhccCCCCC----CCceEEEEecchhHHhhcC-------CCceEecCCCCHHHHHHHHHHhhcCC
Q 039644 73 VFDDVTCF--SQLESLMGSLDWLT----PVSRIILTTRNKQVLRNWG-------VSKIYEMEALEYHHALELFSQHAFKR 139 (192)
Q Consensus 73 VlDdv~~~--~~~~~l~~~~~~~~----~~~~iivTtR~~~~~~~~~-------~~~~~~l~~l~~~ea~~lf~~~~~~~ 139 (192)
+||+++.. .....+...+.... .+..+|++|+......... ....+.+++++.++..+++...+...
T Consensus 130 ilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~ 209 (389)
T 1fnn_A 130 VLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG 209 (389)
T ss_dssp EEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH
T ss_pred EEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh
Confidence 99999864 33455544443211 3667888887654332221 12369999999999999998765321
Q ss_pred CCCCccHHHHHHHHHHHh---------CCCchHHHHH
Q 039644 140 NHPDVGYEKLSSNVTKYA---------QGIPLALKVL 167 (192)
Q Consensus 140 ~~~~~~~~~~~~~i~~~~---------~g~Plai~~~ 167 (192)
.....-..+....+.+.+ .|.|..+..+
T Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 210 LAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp BCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 111122345677788888 7887544433
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=1.7e-06 Score=66.30 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=87.0
Q ss_pred CchhHHHHHHHHHhhCC-Cc-ceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhc-CCceEEEEEeCC
Q 039644 1 IGKTAIARAIFDKISGD-FE-CSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRL-SRMKVLIVFDDV 77 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv 77 (192)
+|||++|+.+++.+... +. ..+++. .+. . .... ....++..+..... .+ .+++.++|+|++
T Consensus 53 ~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~---~-~~~~-~i~~~~~~~~~~~~----------~~~~~~~~viiiDe~ 116 (323)
T 1sxj_B 53 IGKTTSVHCLAHELLGRSYADGVLELN-ASD---D-RGID-VVRNQIKHFAQKKL----------HLPPGKHKIVILDEA 116 (323)
T ss_dssp SSHHHHHHHHHHHHHGGGHHHHEEEEC-TTS---C-CSHH-HHHTHHHHHHHBCC----------CCCTTCCEEEEEESG
T ss_pred CCHHHHHHHHHHHhcCCcccCCEEEec-Ccc---c-cChH-HHHHHHHHHHhccc----------cCCCCCceEEEEECc
Confidence 69999999999986332 22 223333 211 0 1222 22233333321100 12 345889999999
Q ss_pred CCch--hHHHhhccCCCCCCCceEEEEecchhHHh-h-cCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHH
Q 039644 78 TCFS--QLESLMGSLDWLTPVSRIILTTRNKQVLR-N-WGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNV 153 (192)
Q Consensus 78 ~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~~-~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i 153 (192)
+... ..+.+...+.....++.+|++|+...... . .+....+.+.+++.++..+++...+..... ....+....+
T Consensus 117 ~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l 194 (323)
T 1sxj_B 117 DSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV--KYTNDGLEAI 194 (323)
T ss_dssp GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHH
Confidence 8643 34444444333345678888887643211 1 134468999999999999999876532111 1224556788
Q ss_pred HHHhCCCch-HHHHHHH
Q 039644 154 TKYAQGIPL-ALKVLSC 169 (192)
Q Consensus 154 ~~~~~g~Pl-ai~~~~~ 169 (192)
++.++|.|. |+..+..
T Consensus 195 ~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 195 IFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 999999995 4454443
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=8.2e-06 Score=62.51 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=64.4
Q ss_pred CceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecchhHHhh--cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQVLRN--WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~--~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++.++|+|+++.. ...+.+...+.....++++|+||........ ......+.+.+++.++...++...+....
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~-- 186 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-- 186 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTT--
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcC--
Confidence 56789999999864 3345554444434556788888876432111 12234789999999999998887664322
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKVL 167 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~~ 167 (192)
..-..+....+++.++|.|..+..+
T Consensus 187 ~~~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 187 LELTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp CEECHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHH
Confidence 1223456677888899998865443
No 16
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.22 E-value=7.4e-06 Score=65.92 Aligned_cols=149 Identities=9% Similarity=0.079 Sum_probs=84.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+||||||+.+++.+...|+..-++. .+..++...+...+... ....+...+...+.+|+||+++..
T Consensus 141 ~GKTtLa~aia~~l~~~~~~~~v~~---------v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~vL~IDEi~~l 206 (440)
T 2z4s_A 141 LGKTHLLQSIGNYVVQNEPDLRVMY---------ITSEKFLNDLVDSMKEG-----KLNEFREKYRKKVDILLIDDVQFL 206 (440)
T ss_dssp SSHHHHHHHHHHHHHHHCCSSCEEE---------EEHHHHHHHHHHHHHTT-----CHHHHHHHHTTTCSEEEEECGGGG
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEE---------eeHHHHHHHHHHHHHcc-----cHHHHHHHhcCCCCEEEEeCcccc
Confidence 6999999999998766554332222 12233444444444332 223344444546779999999743
Q ss_pred h----hHHHhhccCCC-CCCCceEEEEecchh---------HHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccH
Q 039644 81 S----QLESLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGY 146 (192)
Q Consensus 81 ~----~~~~l~~~~~~-~~~~~~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~ 146 (192)
. ..+.+...+.. ...|..||+||.... +...+.....+.+++++.++..+++...+..... ...
T Consensus 207 ~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~--~i~ 284 (440)
T 2z4s_A 207 IGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG--ELP 284 (440)
T ss_dssp SSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC--CCC
T ss_pred cCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC--CCC
Confidence 2 12223222211 134667888887632 2222333457889999999999998876532111 011
Q ss_pred HHHHHHHHHHhCCCchHHH
Q 039644 147 EKLSSNVTKYAQGIPLALK 165 (192)
Q Consensus 147 ~~~~~~i~~~~~g~Plai~ 165 (192)
.+....|++.+.|.+..+.
T Consensus 285 ~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 285 EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp TTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHH
Confidence 1234566677777776443
No 17
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.08 E-value=5e-05 Score=59.24 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEEecchhHH-h-hcCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNKQVL-R-NWGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivTtR~~~~~-~-~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++.++|+|+++.. ...+.+...+.....+..+|++|...... . .......+.+.+++.++..+++...+.....
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~- 196 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 196 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 45789999999754 33555555444444566777777654321 1 1134578999999999999988876522111
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKVLS 168 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~~~ 168 (192)
....+....+++.++|.|..+..+.
T Consensus 197 -~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 197 -AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp -CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred -CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1123456678889999998776544
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.05 E-value=0.00014 Score=55.28 Aligned_cols=98 Identities=9% Similarity=0.028 Sum_probs=64.7
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhHHh-h-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVLR-N-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~~-~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++.++|+|+++... ..+.+...+.....++.+|++|....... . ......+.+.+++.++..+++...+.....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~- 179 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV- 179 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 567899999998643 35566666655556778888886644111 1 133458999999999999988876643221
Q ss_pred CccHHHHHHHHHHHhCCCchHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKV 166 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~ 166 (192)
.-..+....+++.++|.+..+..
T Consensus 180 -~i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 180 -KITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp -CBCHHHHHHHHHTTTTCHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12344566777888888875443
No 19
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.01 E-value=0.00019 Score=55.53 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+++-++|+|+++... ..+.+...+.....++.+|++|.+.. +.... +....+.+++++.++..+.+.... .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~-- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T-- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C--
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C--
Confidence 457799999998653 35566655555456777888877653 11111 455789999999999999887764 1
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKVL 167 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~~ 167 (192)
...+....+++.++|.|..+..+
T Consensus 182 --~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 182 --MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp --CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12344567888899998765443
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.98 E-value=2e-05 Score=57.57 Aligned_cols=139 Identities=13% Similarity=0.116 Sum_probs=77.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+||+.+++........+.|+. .+..... .. +.. ..+ .++.+||||+++..
T Consensus 63 ~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~---~~-----------------~~~----~~~-~~~~vliiDe~~~~ 116 (242)
T 3bos_A 63 SGRTHLIHAACARANELERRSFYIP-LGIHASI---ST-----------------ALL----EGL-EQFDLICIDDVDAV 116 (242)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS---CG-----------------GGG----TTG-GGSSEEEEETGGGG
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH---HH-----------------HHH----Hhc-cCCCEEEEeccccc
Confidence 6999999999997655444456665 2221100 00 000 011 34569999999754
Q ss_pred hh----HHHhhccCCCC-CCCc-eEEEEecchh---------HHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCcc
Q 039644 81 SQ----LESLMGSLDWL-TPVS-RIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDVG 145 (192)
Q Consensus 81 ~~----~~~l~~~~~~~-~~~~-~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~ 145 (192)
.. .+.+...+... ..+. ++|+||+... +...+.....+.+++++.++..+++...+..... ..
T Consensus 117 ~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~ 194 (242)
T 3bos_A 117 AGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QL 194 (242)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CC
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CC
Confidence 21 22222221110 1122 4788876432 1111112367999999999999998876632211 12
Q ss_pred HHHHHHHHHHHhCCCchHHHHH
Q 039644 146 YEKLSSNVTKYAQGIPLALKVL 167 (192)
Q Consensus 146 ~~~~~~~i~~~~~g~Plai~~~ 167 (192)
..+....+++.++|.+..+..+
T Consensus 195 ~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 195 PEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHH
T ss_pred CHHHHHHHHHHccCCHHHHHHH
Confidence 3455677888899988766544
No 21
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.91 E-value=0.00046 Score=51.59 Aligned_cols=118 Identities=19% Similarity=0.140 Sum_probs=64.6
Q ss_pred CCceEEEEEeCCCCc-----------h-hHHHhhccCCC---CCCCceEEEEecchhHHhh---c-CCCceEecCCCCH-
Q 039644 66 SRMKVLIVFDDVTCF-----------S-QLESLMGSLDW---LTPVSRIILTTRNKQVLRN---W-GVSKIYEMEALEY- 125 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~-----------~-~~~~l~~~~~~---~~~~~~iivTtR~~~~~~~---~-~~~~~~~l~~l~~- 125 (192)
...+.+|+||+++.. . ..+.+...+.. .+....||.||........ . .....+.+++++.
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 456889999998643 1 12333222221 2233446667776644332 1 2246788998887
Q ss_pred HHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCC------chHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 039644 126 HHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGI------PLALKVLSCFLHKREKEVWESAIDKLQRIL 190 (192)
Q Consensus 126 ~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~------Plai~~~~~~l~~~~~~~w~~~l~~l~~~~ 190 (192)
++...++.... . ...+....+++.+.|. .-++.++-..........++.+++.+++..
T Consensus 202 ~~i~~i~~~~~---~----~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 202 EQLLEALELLG---N----FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp HHHHHHHHHHT---C----SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcC---C----CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcC
Confidence 55556555431 1 1234566788888884 333333333322223667778887777553
No 22
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.71 E-value=0.00031 Score=53.67 Aligned_cols=142 Identities=13% Similarity=0.066 Sum_probs=79.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+||+.+++.....| .++. .... ....++.. .+.. . ...+.+|+||+++..
T Consensus 49 tGKT~la~~i~~~~~~~~---~~~~-~~~~----~~~~~l~~----~l~~-------------~-~~~~~~l~lDEi~~l 102 (324)
T 1hqc_A 49 LGKTTLAHVIAHELGVNL---RVTS-GPAI----EKPGDLAA----ILAN-------------S-LEEGDILFIDEIHRL 102 (324)
T ss_dssp CCCHHHHHHHHHHHTCCE---EEEC-TTTC----CSHHHHHH----HHTT-------------T-CCTTCEEEETTTTSC
T ss_pred CCHHHHHHHHHHHhCCCE---EEEe-cccc----CChHHHHH----HHHH-------------h-ccCCCEEEEECCccc
Confidence 699999999999774332 2333 2111 12222221 1111 0 124568999999865
Q ss_pred h--hHHHhhccCCCC------------------CCCceEEEEecchhHHhh-c--CCCceEecCCCCHHHHHHHHHHhhc
Q 039644 81 S--QLESLMGSLDWL------------------TPVSRIILTTRNKQVLRN-W--GVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 81 ~--~~~~l~~~~~~~------------------~~~~~iivTtR~~~~~~~-~--~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
. ....+...+... .++..+|.+|........ . .....+.+.+++.++...++...+.
T Consensus 103 ~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 103 SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH
Confidence 3 222222111100 023557766664332111 1 1235789999999999999887764
Q ss_pred CCCCCCccHHHHHHHHHHHhCCCchHHHHHHHH
Q 039644 138 KRNHPDVGYEKLSSNVTKYAQGIPLALKVLSCF 170 (192)
Q Consensus 138 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 170 (192)
.... .-..+....+++.+.|.|..+..+...
T Consensus 183 ~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 183 LLGV--RITEEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp TTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred hcCC--CCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3221 123456778889999999887766543
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.65 E-value=0.00077 Score=52.03 Aligned_cols=98 Identities=11% Similarity=0.118 Sum_probs=60.5
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhHH-hhc-CCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVL-RNW-GVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~-~~~-~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
..+-++++|+++... ....+...+.......++|++|...... ... .....+.+.+++.++....+...+.....
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~- 210 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENV- 210 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC-
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCC-
Confidence 355799999997542 2344444333334456788877554311 111 22357899999999999988876533221
Q ss_pred CccHHHHHHHHHHHhCCCchHHHH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLALKV 166 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Plai~~ 166 (192)
.-..+....+++.++|.|..+..
T Consensus 211 -~i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 211 -KCDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp -CCCHHHHHHHHHHTSSCHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12245667888899999886443
No 24
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.60 E-value=0.0011 Score=50.87 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=75.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+||+.+++.....-...+++. ..++...+...+... ....+...+. ++.+|+||+++..
T Consensus 48 tGKT~la~~i~~~~~~~~~~~~~i~-----------~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~vL~iDEi~~l 110 (324)
T 1l8q_A 48 TGKTHLLQAAGNEAKKRGYRVIYSS-----------ADDFAQAMVEHLKKG-----TINEFRNMYK-SVDLLLLDDVQFL 110 (324)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE-----------HHHHHHHHHHHHHHT-----CHHHHHHHHH-TCSEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHHCCCEEEEEE-----------HHHHHHHHHHHHHcC-----cHHHHHHHhc-CCCEEEEcCcccc
Confidence 6999999999997643312234443 223333333333221 1222222222 3669999999754
Q ss_pred h---h-HHHhhccCCC-CCCCceEEEEecchh---------HHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccH
Q 039644 81 S---Q-LESLMGSLDW-LTPVSRIILTTRNKQ---------VLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGY 146 (192)
Q Consensus 81 ~---~-~~~l~~~~~~-~~~~~~iivTtR~~~---------~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~ 146 (192)
. . .+.+...+.. ...+..+|+||.... +...+.....+.+++ +.++..+++...+..... .-.
T Consensus 111 ~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~ 187 (324)
T 1l8q_A 111 SGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELR 187 (324)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCC
T ss_pred cCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCC
Confidence 3 1 1222222111 124557888876432 222222335789999 999999998877642221 112
Q ss_pred HHHHHHHHHHhCCCch
Q 039644 147 EKLSSNVTKYAQGIPL 162 (192)
Q Consensus 147 ~~~~~~i~~~~~g~Pl 162 (192)
.+....+.+.+ |.+-
T Consensus 188 ~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 188 KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHHHHHC-SSHH
T ss_pred HHHHHHHHHhC-CCHH
Confidence 34455667777 6654
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.59 E-value=0.0015 Score=49.02 Aligned_cols=118 Identities=22% Similarity=0.322 Sum_probs=63.3
Q ss_pred CCceEEEEEeCCCCc-----------h-----hHHHhhccCC--CCCCCceEEEEecchhHHhh-----cCCCceEecCC
Q 039644 66 SRMKVLIVFDDVTCF-----------S-----QLESLMGSLD--WLTPVSRIILTTRNKQVLRN-----WGVSKIYEMEA 122 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~-----------~-----~~~~l~~~~~--~~~~~~~iivTtR~~~~~~~-----~~~~~~~~l~~ 122 (192)
...+.+|+||+++.. . .+..+...+. ....+..||.||........ ......+.++.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 187 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCC
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECC
Confidence 345689999999643 1 1222222221 12235567777765432211 12234788999
Q ss_pred CCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHhCCC-chHHHHHHH------HhccCC---HHHHHHHHHHHH
Q 039644 123 LEYHHALELFSQHAFKRNH-PDVGYEKLSSNVTKYAQGI-PLALKVLSC------FLHKRE---KEVWESAIDKLQ 187 (192)
Q Consensus 123 l~~~ea~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~-Plai~~~~~------~l~~~~---~~~w~~~l~~l~ 187 (192)
.+.++..+++......... .... ...+.+.+.|. |-.+..+.. ..+... .+...++++++.
T Consensus 188 p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 188 PDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 9999999999887643222 1222 34566667764 434443322 222222 666666666554
No 26
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0014 Score=50.37 Aligned_cols=131 Identities=10% Similarity=0.096 Sum_probs=72.4
Q ss_pred CchhHHHHHHHHHhhCCC-----c--ceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC-cC---chHHHHhhc---C
Q 039644 1 IGKTAIARAIFDKISGDF-----E--CSCFLENVREESQRPGGLACLRQKLLSNILKDKNV-MP---YIDLNFRRL---S 66 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F-----~--~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~~~l~~~l---~ 66 (192)
+|||++++.+++++.... + ..+.+.+... .+...++..|.+++.+.... .. .+..+...+ .
T Consensus 56 TGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~-----~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~ 130 (318)
T 3te6_A 56 STKFQLVNDVMDELITSSARKELPIFDYIHIDALEL-----AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAK 130 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC-----C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc-----CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcc
Confidence 499999999999764321 1 2344442222 46778888999998654322 11 233333333 3
Q ss_pred CceEEEEEeCCCCchh---HHHhhccCCCCCCCceEEEEecchh-----H----HhhcCCCceEecCCCCHHHHHHHHHH
Q 039644 67 RMKVLIVFDDVTCFSQ---LESLMGSLDWLTPVSRIILTTRNKQ-----V----LRNWGVSKIYEMEALEYHHALELFSQ 134 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~iivTtR~~~-----~----~~~~~~~~~~~l~~l~~~ea~~lf~~ 134 (192)
+++++++||.++...+ +..+............+|.++.... + ...++ ...+.+++.+.+|..+++..
T Consensus 131 ~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~ 209 (318)
T 3te6_A 131 KRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIIT 209 (318)
T ss_dssp SCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHH
T ss_pred CCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHH
Confidence 5689999999986532 2222211001111222333343321 1 11221 25799999999999999887
Q ss_pred hhc
Q 039644 135 HAF 137 (192)
Q Consensus 135 ~~~ 137 (192)
+..
T Consensus 210 Rl~ 212 (318)
T 3te6_A 210 RLK 212 (318)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.42 E-value=0.0014 Score=52.81 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=75.1
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+||||||+.+++.....|.. +. ... ....++. .++.... .....+++.+|+||+++..
T Consensus 61 tGKTtlAr~ia~~~~~~f~~---l~-a~~-----~~~~~ir-~~~~~a~------------~~~~~~~~~iLfIDEI~~l 118 (447)
T 3pvs_A 61 TGKTTLAEVIARYANADVER---IS-AVT-----SGVKEIR-EAIERAR------------QNRNAGRRTILFVDEVHRF 118 (447)
T ss_dssp SSHHHHHHHHHHHTTCEEEE---EE-TTT-----CCHHHHH-HHHHHHH------------HHHHTTCCEEEEEETTTCC
T ss_pred CcHHHHHHHHHHHhCCCeEE---EE-ecc-----CCHHHHH-HHHHHHH------------HhhhcCCCcEEEEeChhhh
Confidence 69999999999987554422 11 111 2333322 2221111 1112456789999999865
Q ss_pred h--hHHHhhccCCCCCCCceEEE-EecchhH---HhhcCCCceEecCCCCHHHHHHHHHHhhcCCC-----CCCccHHHH
Q 039644 81 S--QLESLMGSLDWLTPVSRIIL-TTRNKQV---LRNWGVSKIYEMEALEYHHALELFSQHAFKRN-----HPDVGYEKL 149 (192)
Q Consensus 81 ~--~~~~l~~~~~~~~~~~~iiv-TtR~~~~---~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~-----~~~~~~~~~ 149 (192)
. ..+.|...+.. + ...+|. ||.+... .........+.+.+++.++...++........ ....-..+.
T Consensus 119 ~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~a 196 (447)
T 3pvs_A 119 NKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDET 196 (447)
T ss_dssp ------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHH
T ss_pred CHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHH
Confidence 3 23344333332 1 223333 4444321 11113456889999999999999887654311 111223455
Q ss_pred HHHHHHHhCCCchHHH
Q 039644 150 SSNVTKYAQGIPLALK 165 (192)
Q Consensus 150 ~~~i~~~~~g~Plai~ 165 (192)
...+++.++|.+..+.
T Consensus 197 l~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 197 RRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHHHHHHCSCHHHHH
T ss_pred HHHHHHHCCCCHHHHH
Confidence 6667777777766543
No 28
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=0.0018 Score=53.10 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=76.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHh--hcCCceEEEEEeCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFR--RLSRMKVLIVFDDVT 78 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~--~l~~~~~LlVlDdv~ 78 (192)
+|||++|+.+++.+. +. .+.+. .+. .....+....+.................. ....++.+|+||+++
T Consensus 88 tGKTtla~~la~~l~--~~-~i~in-~s~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid 158 (516)
T 1sxj_A 88 IGKTTAAHLVAQELG--YD-ILEQN-ASD-----VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVD 158 (516)
T ss_dssp SSHHHHHHHHHHHTT--CE-EEEEC-TTS-----CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGG
T ss_pred CCHHHHHHHHHHHcC--CC-EEEEe-CCC-----cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCC
Confidence 699999999999873 22 22232 222 12222333332222211110111111100 123568899999997
Q ss_pred Cch-----hHHHhhccCCCCCCCceEEEEecchh---HHhhcCCCceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHH
Q 039644 79 CFS-----QLESLMGSLDWLTPVSRIILTTRNKQ---VLRNWGVSKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLS 150 (192)
Q Consensus 79 ~~~-----~~~~l~~~~~~~~~~~~iivTtR~~~---~~~~~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~ 150 (192)
... .+..+...+.. .+..||+++.... ..........+.+++++.++..+++...+...... -..+..
T Consensus 159 ~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~~~l 234 (516)
T 1sxj_A 159 GMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK--LDPNVI 234 (516)
T ss_dssp GCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--CCTTHH
T ss_pred ccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHH
Confidence 542 12333322221 2334666654432 11112345679999999999998887765321110 112335
Q ss_pred HHHHHHhCCCch-HHHHH
Q 039644 151 SNVTKYAQGIPL-ALKVL 167 (192)
Q Consensus 151 ~~i~~~~~g~Pl-ai~~~ 167 (192)
..|++.++|.+. ++..+
T Consensus 235 ~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 235 DRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp HHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHH
Confidence 578888888544 44444
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.39 E-value=0.015 Score=42.75 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=53.5
Q ss_pred CceEEEEEeCCCCch-----------------hHHHhhccCCC--CCCCceEEEEecchhHHhh--c---CCCceEecCC
Q 039644 67 RMKVLIVFDDVTCFS-----------------QLESLMGSLDW--LTPVSRIILTTRNKQVLRN--W---GVSKIYEMEA 122 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~--~~~~~~iivTtR~~~~~~~--~---~~~~~~~l~~ 122 (192)
..+.+|+||+++... .+..+...+.. ...+..+|.||........ . .....+.++.
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 457899999998541 12233222221 1234456666655432111 1 1235778899
Q ss_pred CCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCch-HHHHH
Q 039644 123 LEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPL-ALKVL 167 (192)
Q Consensus 123 l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 167 (192)
.+.++-.+++......... ..........+.+.+.|++- .|..+
T Consensus 177 p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 9999999988876532221 12222234678888888765 44433
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.38 E-value=0.0016 Score=49.96 Aligned_cols=101 Identities=10% Similarity=0.033 Sum_probs=56.2
Q ss_pred CCceEEEEEeCCCCchh-------------HHHhhcc---CCCCCCCceEEEEecchhHHhh---cCCCceEecCCCCHH
Q 039644 66 SRMKVLIVFDDVTCFSQ-------------LESLMGS---LDWLTPVSRIILTTRNKQVLRN---WGVSKIYEMEALEYH 126 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~~~~iivTtR~~~~~~~---~~~~~~~~l~~l~~~ 126 (192)
...+.+|+||+++.... ...+... +.....+..||.||........ ......+.++..+.+
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~ 187 (322)
T 3eie_A 108 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 187 (322)
T ss_dssp HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHH
T ss_pred hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHH
Confidence 34678999999974311 2222222 2222344555557765332111 023456788888999
Q ss_pred HHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCC-chHHHHHH
Q 039644 127 HALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGI-PLALKVLS 168 (192)
Q Consensus 127 ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 168 (192)
+-.+++......... .........+++.+.|+ +-.|..+.
T Consensus 188 ~r~~il~~~~~~~~~--~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 188 ARTTMFEINVGDTPC--VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHHHHHTTCCC--CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999887643221 11234456788888874 43444443
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.38 E-value=0.0021 Score=49.72 Aligned_cols=99 Identities=6% Similarity=0.058 Sum_probs=60.5
Q ss_pred CceEEEEEeCCCCchh--HHHhhccCCCCCCCceEEEEecchhHH-hh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFSQ--LESLMGSLDWLTPVSRIILTTRNKQVL-RN-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~iivTtR~~~~~-~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
.++-++|||+++.... .+.+...+.....++.+|++|...... .. .+....+.+++++.++..+.+...+.....
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~- 211 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI- 211 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 3677999999987532 334443333333467788888664311 11 134478999999999999988876532111
Q ss_pred CccH-HHHHHHHHHHhCCCchHHHHH
Q 039644 143 DVGY-EKLSSNVTKYAQGIPLALKVL 167 (192)
Q Consensus 143 ~~~~-~~~~~~i~~~~~g~Plai~~~ 167 (192)
.-. ++....|++.++|.+..+..+
T Consensus 212 -~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 212 -QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp -EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred -CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 111 345567788888887655443
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.37 E-value=0.019 Score=44.07 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=55.4
Q ss_pred CceEEEEEeCCCCch-------------hHHHhhccCC---CCCCCceEEEEecchhHHhh---cCCCceEecCCCCHHH
Q 039644 67 RMKVLIVFDDVTCFS-------------QLESLMGSLD---WLTPVSRIILTTRNKQVLRN---WGVSKIYEMEALEYHH 127 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~-------------~~~~l~~~~~---~~~~~~~iivTtR~~~~~~~---~~~~~~~~l~~l~~~e 127 (192)
..+.+|+||+++... ....+...+. ....+..||.||........ ......+.++..+.++
T Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 183 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHA 183 (322)
T ss_dssp TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHH
T ss_pred cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHH
Confidence 567899999997541 0122222221 11234445556654321111 1334678888889998
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCch-HHHHHH
Q 039644 128 ALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPL-ALKVLS 168 (192)
Q Consensus 128 a~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 168 (192)
-.+++......... .........+++.+.|+.- .|..+.
T Consensus 184 r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 184 RAAMFKLHLGTTQN--SLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHHHHHHHTTCCB--CCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 88888876632221 1123456678888888743 354444
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.33 E-value=0.0047 Score=47.18 Aligned_cols=142 Identities=13% Similarity=0.144 Sum_probs=74.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||++|+.+++.+.. ..+.+. .+. ..... ....+.......+ +.+.+.++++|+++..
T Consensus 59 ~GKT~la~~la~~l~~---~~~~i~-~~~-----~~~~~-i~~~~~~~~~~~~-----------~~~~~~vliiDEi~~l 117 (324)
T 3u61_B 59 TGKTTVAKALCHDVNA---DMMFVN-GSD-----CKIDF-VRGPLTNFASAAS-----------FDGRQKVIVIDEFDRS 117 (324)
T ss_dssp SSHHHHHHHHHHHTTE---EEEEEE-TTT-----CCHHH-HHTHHHHHHHBCC-----------CSSCEEEEEEESCCCG
T ss_pred CCHHHHHHHHHHHhCC---CEEEEc-ccc-----cCHHH-HHHHHHHHHhhcc-----------cCCCCeEEEEECCccc
Confidence 6999999999998742 223333 222 23222 2222222211111 1246789999999976
Q ss_pred h---hHHHhhccCCCCCCCceEEEEecchhHHhh--cCCCceEecCCCCHHHHHHHH-------HHhhcCCCCCCccHHH
Q 039644 81 S---QLESLMGSLDWLTPVSRIILTTRNKQVLRN--WGVSKIYEMEALEYHHALELF-------SQHAFKRNHPDVGYEK 148 (192)
Q Consensus 81 ~---~~~~l~~~~~~~~~~~~iivTtR~~~~~~~--~~~~~~~~l~~l~~~ea~~lf-------~~~~~~~~~~~~~~~~ 148 (192)
. ..+.+...+.....++++|+||........ ......+.+++++.++-.+++ ...+..... .-...+
T Consensus 118 ~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~~~ 196 (324)
T 3u61_B 118 GLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIADMK 196 (324)
T ss_dssp GGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSCHH
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHH
Confidence 4 344444333322345678888876441110 012357999999988743332 222211111 110125
Q ss_pred HHHHHHHHhCCCchHH
Q 039644 149 LSSNVTKYAQGIPLAL 164 (192)
Q Consensus 149 ~~~~i~~~~~g~Plai 164 (192)
....+++.++|.+..+
T Consensus 197 ~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 197 VVAALVKKNFPDFRKT 212 (324)
T ss_dssp HHHHHHHHTCSCTTHH
T ss_pred HHHHHHHhCCCCHHHH
Confidence 5667888888876643
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.29 E-value=0.0034 Score=47.56 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=43.3
Q ss_pred eEEEEEeCCCCc-----------hhHHHhhccCCCCCCCceEEEEecchhHHhh---c-----CCCceEecCCCCHHHHH
Q 039644 69 KVLIVFDDVTCF-----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRN---W-----GVSKIYEMEALEYHHAL 129 (192)
Q Consensus 69 ~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~---~-----~~~~~~~l~~l~~~ea~ 129 (192)
+.+|+||+++.. .....+...+.....+..+|.||........ . .....+.+++++.++..
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~ 210 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELF 210 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHH
Confidence 459999999833 2344444444434456677777754321110 0 12367899999999999
Q ss_pred HHHHHhhc
Q 039644 130 ELFSQHAF 137 (192)
Q Consensus 130 ~lf~~~~~ 137 (192)
.++.....
T Consensus 211 ~il~~~l~ 218 (309)
T 3syl_A 211 EIAGHMLD 218 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99877653
No 35
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.28 E-value=0.0064 Score=48.84 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=57.3
Q ss_pred CCceEEEEEeCCCCch-------------hHHHhhccCCC---CCCCceEEEEecchhHHhh---cCCCceEecCCCCHH
Q 039644 66 SRMKVLIVFDDVTCFS-------------QLESLMGSLDW---LTPVSRIILTTRNKQVLRN---WGVSKIYEMEALEYH 126 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~---~~~~~~iivTtR~~~~~~~---~~~~~~~~l~~l~~~ 126 (192)
...+.+|+||+++... ....+...+.. ...+..||.||........ ......+.++..+.+
T Consensus 225 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 304 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 304 (444)
T ss_dssp HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHH
T ss_pred HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHH
Confidence 3567899999998541 12344443332 1344556667755432111 123457788888888
Q ss_pred HHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCch-HHHHHH
Q 039644 127 HALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPL-ALKVLS 168 (192)
Q Consensus 127 ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 168 (192)
+...+|......... .........|++.+.|+.- .|..+.
T Consensus 305 ~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 305 ARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888888876632221 1123456678888888543 444433
No 36
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.17 E-value=0.005 Score=47.94 Aligned_cols=100 Identities=10% Similarity=0.028 Sum_probs=55.1
Q ss_pred CceEEEEEeCCCCchh-------------HHHhhcc---CCCCCCCceEEEEecchhHH---hhcCCCceEecCCCCHHH
Q 039644 67 RMKVLIVFDDVTCFSQ-------------LESLMGS---LDWLTPVSRIILTTRNKQVL---RNWGVSKIYEMEALEYHH 127 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~~~~iivTtR~~~~~---~~~~~~~~~~l~~l~~~e 127 (192)
..+.+|+||+++.... ...+... +.....+..||.||...... ........+.++..+.++
T Consensus 142 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAA 221 (355)
T ss_dssp TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHH
T ss_pred cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHH
Confidence 4678999999985320 2222222 21223345555566544211 111345678888889999
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCC-chHHHHHH
Q 039644 128 ALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGI-PLALKVLS 168 (192)
Q Consensus 128 a~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 168 (192)
-.+++......... .........|++.+.|. +-.|..+.
T Consensus 222 r~~il~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 222 RTTMFEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 88988877633221 11234466788888885 33344443
No 37
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.15 E-value=0.016 Score=45.14 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=54.0
Q ss_pred CceEEEEEeCCCCc-------------hhHHHhhccCCC----CCCCceEEEEecchhHHh---hcCCCceEecCCCCHH
Q 039644 67 RMKVLIVFDDVTCF-------------SQLESLMGSLDW----LTPVSRIILTTRNKQVLR---NWGVSKIYEMEALEYH 126 (192)
Q Consensus 67 ~~~~LlVlDdv~~~-------------~~~~~l~~~~~~----~~~~~~iivTtR~~~~~~---~~~~~~~~~l~~l~~~ 126 (192)
..+.+|+||+++.. .....+...+.. ...+..||.||....... .......+.+...+.+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~ 254 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEAS 254 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHH
Confidence 45789999999532 012222222211 123444555665432111 1123456788888988
Q ss_pred HHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCC-chHHHHHH
Q 039644 127 HALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGI-PLALKVLS 168 (192)
Q Consensus 127 ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 168 (192)
+..+++...+..... .........+++.+.|+ +-.+..+.
T Consensus 255 ~r~~il~~~~~~~~~--~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 255 ARKQIVINLMSKEQC--CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHHHHHTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC--CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888888776532221 11234566788888884 44555554
No 38
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.15 E-value=0.023 Score=44.67 Aligned_cols=52 Identities=15% Similarity=0.074 Sum_probs=34.2
Q ss_pred CceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCch-HHHHHH
Q 039644 115 SKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPL-ALKVLS 168 (192)
Q Consensus 115 ~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 168 (192)
...+.+...+.++..+++...+..... .........+++.+.|..- ++..+.
T Consensus 274 ~~~i~i~~p~~~~r~~il~~~~~~~~~--~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 274 IKRVYVSLPNEETRLLLLKNLLCKQGS--PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCC--CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ceEEEcCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456888999999999998876633221 1223456678888888655 555544
No 39
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=0.011 Score=45.66 Aligned_cols=95 Identities=9% Similarity=0.087 Sum_probs=54.8
Q ss_pred CceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhHH-hh-cCCCceEecCCCCHHHHHHHHHHhhcCCCCC
Q 039644 67 RMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQVL-RN-WGVSKIYEMEALEYHHALELFSQHAFKRNHP 142 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~~-~~-~~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~ 142 (192)
+.+-++|+|+++... ..+.+...+......+++|++|...... .. .+....+.+.+++.++..+.+...+-....
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~- 187 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKL- 187 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC-
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCC-
Confidence 346789999997542 3344443333334556777777553311 11 133457889999999988877765522111
Q ss_pred CccHHHHHHHHHHHhCCCchH
Q 039644 143 DVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 143 ~~~~~~~~~~i~~~~~g~Pla 163 (192)
.-.......+++.++|.+--
T Consensus 188 -~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 188 -KLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp -CBCHHHHHHHHHHHTTCHHH
T ss_pred -CCCHHHHHHHHHHcCCCHHH
Confidence 11234455677777777653
No 40
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.99 E-value=0.00046 Score=48.12 Aligned_cols=65 Identities=8% Similarity=-0.005 Sum_probs=35.8
Q ss_pred CCceEEEEEeCCCCch---------h-HHHhhccCCCCCCCceEEEEecchhHHhh-------cCCCceEecCCCCHHHH
Q 039644 66 SRMKVLIVFDDVTCFS---------Q-LESLMGSLDWLTPVSRIILTTRNKQVLRN-------WGVSKIYEMEALEYHHA 128 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~~~~iivTtR~~~~~~~-------~~~~~~~~l~~l~~~ea 128 (192)
.+++.+|+||+++... . ...+...+ . ..+..+|.+|........ ...-..+.+.+++.++.
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~-~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~ 190 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-A-RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 190 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHH-H-TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-c-cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHH
Confidence 3567899999997542 1 22222211 1 234457777765542211 12223578888888877
Q ss_pred HHHH
Q 039644 129 LELF 132 (192)
Q Consensus 129 ~~lf 132 (192)
.+++
T Consensus 191 ~~il 194 (195)
T 1jbk_A 191 IAIL 194 (195)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 6553
No 41
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.93 E-value=0.0096 Score=45.69 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=56.4
Q ss_pred ceEEEEEeCCCCch--hHHHhhccCCCC------------------CCCceEEEEecchhHHhh--c-CCCceEecCCCC
Q 039644 68 MKVLIVFDDVTCFS--QLESLMGSLDWL------------------TPVSRIILTTRNKQVLRN--W-GVSKIYEMEALE 124 (192)
Q Consensus 68 ~~~LlVlDdv~~~~--~~~~l~~~~~~~------------------~~~~~iivTtR~~~~~~~--~-~~~~~~~l~~l~ 124 (192)
...+|+||+++... ....+...+... .+...+|.+|........ . .....+.+.+++
T Consensus 106 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~ 185 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYK 185 (338)
T ss_dssp TTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcC
Confidence 45689999998542 222222211110 112456666655332111 1 223679999999
Q ss_pred HHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 039644 125 YHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVL 167 (192)
Q Consensus 125 ~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 167 (192)
.++...++...+.... .....+....+.+.+.|.|-.+..+
T Consensus 186 ~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 186 DSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp HHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999887663222 1223455667888889998554433
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.86 E-value=0.0096 Score=46.18 Aligned_cols=95 Identities=9% Similarity=0.025 Sum_probs=54.4
Q ss_pred eEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecc------------hh-H-HhhcCCCceEecCCCCHHHHHHHH
Q 039644 69 KVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRN------------KQ-V-LRNWGVSKIYEMEALEYHHALELF 132 (192)
Q Consensus 69 ~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~------------~~-~-~~~~~~~~~~~l~~l~~~ea~~lf 132 (192)
+.+|+||+++... ....+...+...... .++++|.. .. + .........+.+++++.++..+++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence 4699999998653 344444444332222 34444431 10 0 111123345899999999999999
Q ss_pred HHhhcCCCCCCccHHHHHHHHHHHhC-CCchHHHH
Q 039644 133 SQHAFKRNHPDVGYEKLSSNVTKYAQ-GIPLALKV 166 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plai~~ 166 (192)
...+.... ..-..+....+++.+. |.|..+..
T Consensus 269 ~~~~~~~~--~~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 269 RIRCEEED--VEMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHTT--CCBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHcC--CCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 87664322 1223455667788887 77765443
No 43
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.86 E-value=0.063 Score=40.24 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=52.6
Q ss_pred CceEEEEEeCCCCch-------------hHHHhh---ccCCCC--CCCceEEEEecchh-----HHhhcCCCceEecCCC
Q 039644 67 RMKVLIVFDDVTCFS-------------QLESLM---GSLDWL--TPVSRIILTTRNKQ-----VLRNWGVSKIYEMEAL 123 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~-------------~~~~l~---~~~~~~--~~~~~iivTtR~~~-----~~~~~~~~~~~~l~~l 123 (192)
..+.+|+||+++... ....+. ..++.. +.+..||.||.... +.. .....+.++..
T Consensus 112 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p 189 (297)
T 3b9p_A 112 MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLP 189 (297)
T ss_dssp TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCC
T ss_pred cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCc
Confidence 457899999996431 011121 112221 13345666676532 122 22356778878
Q ss_pred CHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCch-HHHHHH
Q 039644 124 EYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPL-ALKVLS 168 (192)
Q Consensus 124 ~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 168 (192)
+.++...++......... .........+.+.+.|.+- ++..+.
T Consensus 190 ~~~~r~~il~~~~~~~~~--~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 190 DEQTRELLLNRLLQKQGS--PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp CHHHHHHHHHHHHGGGSC--CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888888887765532111 1123456678888888876 454443
No 44
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.66 E-value=0.0034 Score=43.74 Aligned_cols=88 Identities=19% Similarity=0.224 Sum_probs=44.7
Q ss_pred CchhHHHHHHHHHhh-CCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+||||||+.++..+. ..-..++++. ..++...+.......... .+...+. ++-+||||+++.
T Consensus 49 ~GKTtL~~~i~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~llilDE~~~ 111 (180)
T 3ec2_A 49 VGKTHLAVATLKAIYEKKGIRGYFFD-----------TKDLIFRLKHLMDEGKDT-----KFLKTVL-NSPVLVLDDLGS 111 (180)
T ss_dssp SSHHHHHHHHHHHHHHHSCCCCCEEE-----------HHHHHHHHHHHHHHTCCS-----HHHHHHH-TCSEEEEETCSS
T ss_pred CCHHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHhcCchHH-----HHHHHhc-CCCEEEEeCCCC
Confidence 699999999999764 2212233443 334444444333322211 1222222 456899999973
Q ss_pred --chhHH--HhhccCCC-CCCCceEEEEecc
Q 039644 80 --FSQLE--SLMGSLDW-LTPVSRIILTTRN 105 (192)
Q Consensus 80 --~~~~~--~l~~~~~~-~~~~~~iivTtR~ 105 (192)
.+.|. .+...+.. ...+..+|+||..
T Consensus 112 ~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 112 ERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 23322 22111111 1245678888864
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.58 E-value=0.021 Score=43.23 Aligned_cols=140 Identities=14% Similarity=0.186 Sum_probs=71.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+||+.++......| +.+ +..++.. ...+.... .....+.......+.+|+||+++..
T Consensus 60 tGKT~la~ala~~~~~~~---i~v-----------~~~~l~~----~~~g~~~~-~~~~~f~~a~~~~p~il~iDEid~l 120 (301)
T 3cf0_A 60 CGKTLLAKAIANECQANF---ISI-----------KGPELLT----MWFGESEA-NVREIFDKARQAAPCVLFFDELDSI 120 (301)
T ss_dssp SSHHHHHHHHHHHTTCEE---EEE-----------CHHHHHH----HHHTTCTT-HHHHHHHHHHHTCSEEEEECSTTHH
T ss_pred cCHHHHHHHHHHHhCCCE---EEE-----------EhHHHHh----hhcCchHH-HHHHHHHHHHhcCCeEEEEEChHHH
Confidence 699999999999875322 222 1222222 12221111 0112222222356899999999742
Q ss_pred h----------------hHHHhhccCCC--CCCCceEEEEecchhHHhh--c---CCCceEecCCCCHHHHHHHHHHhhc
Q 039644 81 S----------------QLESLMGSLDW--LTPVSRIILTTRNKQVLRN--W---GVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 81 ~----------------~~~~l~~~~~~--~~~~~~iivTtR~~~~~~~--~---~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
. ....+...+.. ...+..||.||........ . .....+.++..+.++-.+++.....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 121 AKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp HHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 1 01223222211 1234566667765432211 1 2345788999999988888876653
Q ss_pred CCCC-CCccHHHHHHHHHHHhCCCchH
Q 039644 138 KRNH-PDVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 138 ~~~~-~~~~~~~~~~~i~~~~~g~Pla 163 (192)
.... .+..+ ..+.+.+.|+|-+
T Consensus 201 ~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 201 KSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred cCCCCccchH----HHHHHHcCCCCHH
Confidence 2221 12222 2445556666543
No 46
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.016 Score=44.15 Aligned_cols=118 Identities=8% Similarity=0.083 Sum_probs=70.7
Q ss_pred CchhHHHHHHHHHh---hCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCC
Q 039644 1 IGKTAIARAIFDKI---SGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDV 77 (192)
Q Consensus 1 iGKTtLa~~~~~~~---~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 77 (192)
+|||++|+.+++.. .........+. ... .. ..+.++ +.+.+.....+. .+++-++|+|++
T Consensus 29 ~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~~--~~-~~id~i-r~li~~~~~~p~------------~~~~kvviIdea 91 (305)
T 2gno_A 29 SYPREVSLELPEYVEKFPPKASDVLEID-PEG--EN-IGIDDI-RTIKDFLNYSPE------------LYTRKYVIVHDC 91 (305)
T ss_dssp SHHHHHHHHHHHHHHTSCCCTTTEEEEC-CSS--SC-BCHHHH-HHHHHHHTSCCS------------SSSSEEEEETTG
T ss_pred CCHHHHHHHHHHhCchhhccCCCEEEEc-CCc--CC-CCHHHH-HHHHHHHhhccc------------cCCceEEEeccH
Confidence 59999999998853 22233445554 211 01 233333 334444432111 245678999999
Q ss_pred CCch--hHHHhhccCCCCCCCceEEEEecchh-HHhhcCCCceEecCCCCHHHHHHHHHHhh
Q 039644 78 TCFS--QLESLMGSLDWLTPVSRIILTTRNKQ-VLRNWGVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 78 ~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~-~~~~~~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
+... ..+.+...+....+.+.+|++|.+.. +....... .+++++++.++..+.+....
T Consensus 92 d~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 92 ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 8653 45666666555556778888876543 22222222 89999999999998887764
No 47
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.27 E-value=0.016 Score=41.22 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=61.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHH-------hcCCCC--------cCchHHHHhhc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNI-------LKDKNV--------MPYIDLNFRRL 65 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~--------~~~~~~l~~~l 65 (192)
.||||+|.-++.+...+=..+.++..+... .. ..-.+++..+.-.+ ....+. .......++.+
T Consensus 39 kGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~-~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~~a~~~l 116 (196)
T 1g5t_A 39 KGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WP-NGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGKRML 116 (196)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SC-CHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CC-ccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 499999999999855443344444323220 11 23333333331000 000000 00455566666
Q ss_pred CCceE-EEEEeCCCCc-----hhHHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEecCCC
Q 039644 66 SRMKV-LIVFDDVTCF-----SQLESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEMEAL 123 (192)
Q Consensus 66 ~~~~~-LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~l 123 (192)
.+.+| |||||.+... -..+.+...+........||+|+|.....-..-...+-+|...
T Consensus 117 ~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 117 ADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp TCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred hcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 66655 9999999432 1123333333333456789999998654333333445555544
No 48
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.12 Score=40.94 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=73.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCC-ChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPG-GLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+|||.||+.++......| +.++ .+....... .....++.+ +...-...+++|.||+++.
T Consensus 193 TGKTllAkAiA~e~~~~f---~~v~-~s~l~sk~vGese~~vr~l----------------F~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 193 TGKTLLARAVAHHTDCKF---IRVS-GAELVQKYIGEGSRMVREL----------------FVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp SSHHHHHHHHHHHHTCEE---EEEE-GGGGSCSSTTHHHHHHHHH----------------HHHHHHTCSEEEEEESSSC
T ss_pred CCHHHHHHHHHHhhCCCc---eEEE-hHHhhccccchHHHHHHHH----------------HHHHHHhCCceEeeecchh
Confidence 699999999999876654 2232 222111100 011111111 1222235689999999974
Q ss_pred ch------------h----HHHhhccCCCC--CCCceEEEEecchhHHhh-----cCCCceEecCCCCHHHHHHHHHHhh
Q 039644 80 FS------------Q----LESLMGSLDWL--TPVSRIILTTRNKQVLRN-----WGVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 80 ~~------------~----~~~l~~~~~~~--~~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
.. . ...+...+... ..+..||.||........ ......+.++..+.++-.++|+.+.
T Consensus 253 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS 332 (405)
T ss_dssp CTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred hccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence 21 0 22333333222 234455667765442211 1235678888888888888888765
Q ss_pred cCCCC-CCccHHHHHHHHHHHhCCCchH
Q 039644 137 FKRNH-PDVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 137 ~~~~~-~~~~~~~~~~~i~~~~~g~Pla 163 (192)
..-.. .+..+ ..+++.+.|+--|
T Consensus 333 ~~~~l~~dvdl----~~lA~~t~G~SGA 356 (405)
T 4b4t_J 333 RKMNLTRGINL----RKVAEKMNGCSGA 356 (405)
T ss_dssp TTSBCCSSCCH----HHHHHHCCSCCHH
T ss_pred cCCCCCccCCH----HHHHHHCCCCCHH
Confidence 33221 12223 4577778877544
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.09 E-value=0.038 Score=41.68 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=17.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||++|+.++......-...+.+.
T Consensus 58 tGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 58 VGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp SSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred cCHHHHHHHHHHHHcCCCcceEEee
Confidence 6999999999997644323334444
No 50
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.97 E-value=0.011 Score=41.79 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=19.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+||+.++.........++++.
T Consensus 65 tGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 65 VGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 6999999999998765544556664
No 51
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.072 Score=42.64 Aligned_cols=139 Identities=21% Similarity=0.263 Sum_probs=73.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCC-hHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGG-LACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+|||.||+.++......|- .++ .+........ .....+. .+...-...+++|.+|+++.
T Consensus 226 tGKTllAkAiA~e~~~~~~---~v~-~s~l~sk~~Gese~~ir~----------------~F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 226 TGKTLLAKAVAATIGANFI---FSP-ASGIVDKYIGESARIIRE----------------MFAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp SSHHHHHHHHHHHHTCEEE---EEE-GGGTCCSSSSHHHHHHHH----------------HHHHHHHSCSEEEEEECCCS
T ss_pred CcHHHHHHHHHHHhCCCEE---EEe-hhhhccccchHHHHHHHH----------------HHHHHHhcCCceeeeecccc
Confidence 6999999999998765432 222 2221111011 1111111 12222235689999999973
Q ss_pred ch------------h----HHHhhccCCC--CCCCceEEEEecchhHHhhc--C---CCceEecCCCCHHHHHHHHHHhh
Q 039644 80 FS------------Q----LESLMGSLDW--LTPVSRIILTTRNKQVLRNW--G---VSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 80 ~~------------~----~~~l~~~~~~--~~~~~~iivTtR~~~~~~~~--~---~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
.. . +..+...+.. ...+..||.||......... . ....+.++..+.++-.++|..+.
T Consensus 286 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (437)
T 4b4t_L 286 IGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT 365 (437)
T ss_dssp SSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH
T ss_pred cccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh
Confidence 21 0 2233333322 22345677777665433221 1 24567888888888888887765
Q ss_pred cCCC-CCCccHHHHHHHHHHHhCCCchH
Q 039644 137 FKRN-HPDVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 137 ~~~~-~~~~~~~~~~~~i~~~~~g~Pla 163 (192)
..-. ..+..+ ..+++.+.|+--|
T Consensus 366 ~~~~~~~d~dl----~~lA~~t~G~sGA 389 (437)
T 4b4t_L 366 AKVKKTGEFDF----EAAVKMSDGFNGA 389 (437)
T ss_dssp HTSCBCSCCCH----HHHHHTCCSCCHH
T ss_pred cCCCCCcccCH----HHHHHhCCCCCHH
Confidence 4322 122223 4567777776543
No 52
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.12 Score=41.62 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=71.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCC-hHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGG-LACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+|||.||+.++.+....|- .++ .+........ ....++.+ +...-...+++|.+|+++.
T Consensus 254 TGKTlLAkAiA~e~~~~fi---~vs-~s~L~sk~vGesek~ir~l----------------F~~Ar~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 254 TGKTLCARAVANRTDATFI---RVI-GSELVQKYVGEGARMVREL----------------FEMARTKKACIIFFDEIDA 313 (467)
T ss_dssp SSHHHHHHHHHHHHTCEEE---EEE-GGGGCCCSSSHHHHHHHHH----------------HHHHHHTCSEEEEEECCTT
T ss_pred CcHHHHHHHHHhccCCCeE---EEE-hHHhhcccCCHHHHHHHHH----------------HHHHHhcCCceEeeccccc
Confidence 6999999999998765542 222 2211111011 11111111 2222245689999999974
Q ss_pred ch----------------hHHHhhccCCCC--CCCceEEEEecchhHHhh-----cCCCceEecCCCCHHHHHHHHHHhh
Q 039644 80 FS----------------QLESLMGSLDWL--TPVSRIILTTRNKQVLRN-----WGVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 80 ~~----------------~~~~l~~~~~~~--~~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
.. ....+...+... ..+..||.||........ ......+.++..+.++-.++|+.+.
T Consensus 314 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 314 VGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393 (467)
T ss_dssp TSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH
T ss_pred ccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHh
Confidence 21 012222222222 233345556655432211 1235678888888888888887765
Q ss_pred cCCC-CCCccHHHHHHHHHHHhCCCch
Q 039644 137 FKRN-HPDVGYEKLSSNVTKYAQGIPL 162 (192)
Q Consensus 137 ~~~~-~~~~~~~~~~~~i~~~~~g~Pl 162 (192)
..-. ..+..+ ..+++.+.|+--
T Consensus 394 ~~~~l~~dvdl----~~LA~~T~GfSG 416 (467)
T 4b4t_H 394 KSMSVERGIRW----ELISRLCPNSTG 416 (467)
T ss_dssp TTSCBCSSCCH----HHHHHHCCSCCH
T ss_pred cCCCCCCCCCH----HHHHHHCCCCCH
Confidence 3322 112223 456777887643
No 53
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.61 E-value=0.016 Score=39.28 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=17.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||||++.++......-...+++.
T Consensus 47 ~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 47 AGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp TTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 5999999999997654311256665
No 54
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.59 E-value=0.066 Score=40.39 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.4
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+|||+||+.+++.....
T Consensus 47 tGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 47 QGKSFQCELVFRKMGIN 63 (293)
T ss_dssp SCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHhCCC
Confidence 69999999999988543
No 55
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.59 E-value=0.049 Score=44.30 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=51.5
Q ss_pred CCceEEEEEeCCCCc--------h-----hHHHhhccCCC--CCCCceEEEEecchhH-----HhhcCCCceEecCCCCH
Q 039644 66 SRMKVLIVFDDVTCF--------S-----QLESLMGSLDW--LTPVSRIILTTRNKQV-----LRNWGVSKIYEMEALEY 125 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~--------~-----~~~~l~~~~~~--~~~~~~iivTtR~~~~-----~~~~~~~~~~~l~~l~~ 125 (192)
.+.+.+|+||+++.. . ....+...+.. ...+..||.||..... .........+.+...+.
T Consensus 295 ~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~ 374 (489)
T 3hu3_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (489)
T ss_dssp HTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCH
T ss_pred hcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCH
Confidence 456789999999421 1 11222222211 1234455556665422 11112345688999999
Q ss_pred HHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHhCCC-chHHHHH
Q 039644 126 HHALELFSQHAFKRNH-PDVGYEKLSSNVTKYAQGI-PLALKVL 167 (192)
Q Consensus 126 ~ea~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~-Plai~~~ 167 (192)
++-.+++......... .+..+ ..+.+.+.|+ +-.+..+
T Consensus 375 ~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 375 TGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 9999999877632221 12222 3455666665 4334433
No 56
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.17 E-value=0.62 Score=33.97 Aligned_cols=91 Identities=13% Similarity=0.024 Sum_probs=45.4
Q ss_pred CceEEEEecchhHHhh-c----CCCceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCC-CchHHHHHH-
Q 039644 96 VSRIILTTRNKQVLRN-W----GVSKIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQG-IPLALKVLS- 168 (192)
Q Consensus 96 ~~~iivTtR~~~~~~~-~----~~~~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~- 168 (192)
+..||.||........ . .....+.++..+.++-.+++............. ....+...+.| .+--+..+.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHHHHHHHH
Confidence 4456666655431111 1 124567788878888777776654222111111 12345666777 554443321
Q ss_pred -----HHhccC---CHHHHHHHHHHHHhc
Q 039644 169 -----CFLHKR---EKEVWESAIDKLQRI 189 (192)
Q Consensus 169 -----~~l~~~---~~~~w~~~l~~l~~~ 189 (192)
+..++. +.+.++.++++...+
T Consensus 227 ~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 227 EAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 111222 267777777766543
No 57
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.16 E-value=0.51 Score=38.22 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=69.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||+||+.++.+....| +.++ .+........... ......+.......+++|+||+++..
T Consensus 60 tGKT~Laraia~~~~~~f---~~is-~~~~~~~~~g~~~---------------~~~r~lf~~A~~~~p~ILfIDEid~l 120 (476)
T 2ce7_A 60 TGKTLLARAVAGEANVPF---FHIS-GSDFVELFVGVGA---------------ARVRDLFAQAKAHAPCIVFIDEIDAV 120 (476)
T ss_dssp SSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCCTTHHH---------------HHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred CCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHHhcccH---------------HHHHHHHHHHHhcCCCEEEEechhhh
Confidence 699999999999765433 2222 2221111000000 00111223333456899999999642
Q ss_pred ----------------hhHHHhhccCCC--CCCCceEEEEecchhHHhh--c---CCCceEecCCCCHHHHHHHHHHhhc
Q 039644 81 ----------------SQLESLMGSLDW--LTPVSRIILTTRNKQVLRN--W---GVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 81 ----------------~~~~~l~~~~~~--~~~~~~iivTtR~~~~~~~--~---~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
.....+...+.. ...+..||.+|........ . .....+.++..+.++-.+++..+..
T Consensus 121 ~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~ 200 (476)
T 2ce7_A 121 GRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR 200 (476)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHH
Confidence 012233222211 1234556667766543221 1 1234778888888777777776553
Q ss_pred CCCC-CCccHHHHHHHHHHHhCCCc
Q 039644 138 KRNH-PDVGYEKLSSNVTKYAQGIP 161 (192)
Q Consensus 138 ~~~~-~~~~~~~~~~~i~~~~~g~P 161 (192)
.... ++.. ...+.+.+.|+.
T Consensus 201 ~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 201 NKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp TSCBCTTCC----HHHHHHTCTTCC
T ss_pred hCCCcchhh----HHHHHHhcCCCc
Confidence 2221 1111 234667777776
No 58
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.13 E-value=0.053 Score=44.67 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.2
Q ss_pred ceEecCCCCHHHHHHHHHHhh
Q 039644 116 KIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 116 ~~~~l~~l~~~ea~~lf~~~~ 136 (192)
..+.+.+++.++-..++..+.
T Consensus 246 ~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 246 EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEECCCCCHHHHHHHHHHTH
T ss_pred ceeeeCCCCHHHHHHHHHHHH
Confidence 578999999999888887654
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.11 E-value=0.046 Score=40.34 Aligned_cols=70 Identities=13% Similarity=0.301 Sum_probs=38.4
Q ss_pred CceEEEEEeCCCCch-----------------hHHHhhccCCCCC---CCceEEEEecchhHHh--hc---CCCceEecC
Q 039644 67 RMKVLIVFDDVTCFS-----------------QLESLMGSLDWLT---PVSRIILTTRNKQVLR--NW---GVSKIYEME 121 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~---~~~~iivTtR~~~~~~--~~---~~~~~~~l~ 121 (192)
..+.+|+||+++... ....+...+.... ....||.||....... .. .....+.++
T Consensus 102 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~ 181 (268)
T 2r62_A 102 QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181 (268)
T ss_dssp SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCC
T ss_pred cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEec
Confidence 456899999996431 1223333332211 2244666665543211 11 123457788
Q ss_pred CCCHHHHHHHHHHhh
Q 039644 122 ALEYHHALELFSQHA 136 (192)
Q Consensus 122 ~l~~~ea~~lf~~~~ 136 (192)
..+.++-.+++....
T Consensus 182 ~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 182 KPDFNGRVEILKVHI 196 (268)
T ss_dssp CCCTTTHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHH
Confidence 888888888887655
No 60
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.66 E-value=0.24 Score=37.02 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=16.3
Q ss_pred ceEecCCCCHHHHHHHHHH
Q 039644 116 KIYEMEALEYHHALELFSQ 134 (192)
Q Consensus 116 ~~~~l~~l~~~ea~~lf~~ 134 (192)
..+.+++++.++..+++..
T Consensus 195 ~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 195 IRVELTALSAADFERILTE 213 (310)
T ss_dssp EEEECCCCCHHHHHHHHHS
T ss_pred ceEEcCCcCHHHHHHHHHh
Confidence 5699999999998888874
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.61 E-value=0.18 Score=43.22 Aligned_cols=115 Identities=21% Similarity=0.250 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||++|+.+++.....-...+.+. ++......... .. .....++. ....+|+||+++..
T Consensus 532 tGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~--------------~~--~l~~~~~~---~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 532 VGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS--------------GG--QLTEKVRR---KPYSVVLLDAIEKA 591 (758)
T ss_dssp SSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC-------------------CHHHHHH---CSSSEEEEECGGGS
T ss_pred CCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--------------cc--hhhHHHHh---CCCeEEEEeCcccc
Confidence 6999999999997643323344454 33322220111 00 01111111 12348999999754
Q ss_pred h--hHHHhhccC-----CC------CCCCceEEEEecchh---------HHhhc------CCCceEecCCCCHHHHHHHH
Q 039644 81 S--QLESLMGSL-----DW------LTPVSRIILTTRNKQ---------VLRNW------GVSKIYEMEALEYHHALELF 132 (192)
Q Consensus 81 ~--~~~~l~~~~-----~~------~~~~~~iivTtR~~~---------~~~~~------~~~~~~~l~~l~~~ea~~lf 132 (192)
. ....+...+ .. ...++.||.||.... +...+ .....+.+.+++.++...++
T Consensus 592 ~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~ 671 (758)
T 3pxi_A 592 HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIV 671 (758)
T ss_dssp CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHH
T ss_pred CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHH
Confidence 3 233332211 11 123567888887311 01111 22358899999999888877
Q ss_pred HHh
Q 039644 133 SQH 135 (192)
Q Consensus 133 ~~~ 135 (192)
...
T Consensus 672 ~~~ 674 (758)
T 3pxi_A 672 SLM 674 (758)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 62
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.12 Score=41.30 Aligned_cols=139 Identities=18% Similarity=0.199 Sum_probs=70.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCC-hHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGG-LACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+|||.||+.++......|- .++ .+........ .....+.+ +...-...+++|.+|+++.
T Consensus 226 TGKTllAkAiA~e~~~~f~---~v~-~s~l~~~~vGese~~ir~l----------------F~~A~~~aP~IifiDEiDa 285 (434)
T 4b4t_M 226 TGKTLLARACAAQTNATFL---KLA-APQLVQMYIGEGAKLVRDA----------------FALAKEKAPTIIFIDELDA 285 (434)
T ss_dssp SSHHHHHHHHHHHHTCEEE---EEE-GGGGCSSCSSHHHHHHHHH----------------HHHHHHHCSEEEEEECTHH
T ss_pred CCHHHHHHHHHHHhCCCEE---EEe-hhhhhhcccchHHHHHHHH----------------HHHHHhcCCeEEeecchhh
Confidence 6999999999998765432 222 2221111011 11111111 1111134589999999962
Q ss_pred c-------h-----h----HHHhhccCCCCC--CCceEEEEecchhHHhhc-----CCCceEecCCCCHHHHHHHHHHhh
Q 039644 80 F-------S-----Q----LESLMGSLDWLT--PVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 80 ~-------~-----~----~~~l~~~~~~~~--~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
. . . ...+...+.... .+--||.||......... .....+.++..+.++-.++|..+.
T Consensus 286 l~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 286 IGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp HHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 1 0 1 223333333322 333455577655432221 124567888888888888887655
Q ss_pred cCCC-CCCccHHHHHHHHHHHhCCCchH
Q 039644 137 FKRN-HPDVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 137 ~~~~-~~~~~~~~~~~~i~~~~~g~Pla 163 (192)
..-. .++..+ ..+++.+.|+--|
T Consensus 366 ~~~~~~~dvdl----~~lA~~t~G~sGA 389 (434)
T 4b4t_M 366 RKMTTDDDINW----QELARSTDEFNGA 389 (434)
T ss_dssp HHSCBCSCCCH----HHHHHHCSSCCHH
T ss_pred cCCCCCCcCCH----HHHHHhCCCCCHH
Confidence 3222 122223 4567777776433
No 63
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.18 Score=40.20 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=81.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCC-ChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPG-GLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+|||.||+.++......|- .++ .+....... ......+.+ +...-...+++|.||+++.
T Consensus 227 TGKTlLAkAiA~e~~~~fi---~v~-~s~l~sk~vGesek~ir~l----------------F~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 227 TGKTLLAKAVANQTSATFL---RIV-GSELIQKYLGDGPRLCRQI----------------FKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp TTHHHHHHHHHHHHTCEEE---EEE-SGGGCCSSSSHHHHHHHHH----------------HHHHHHTCSEEEEEEEESS
T ss_pred chHHHHHHHHHHHhCCCEE---EEE-HHHhhhccCchHHHHHHHH----------------HHHHHhcCCcEEEEehhhh
Confidence 6999999999998765542 222 222111101 111111111 1112235689999999973
Q ss_pred ch------------h----HHHhhccCCC--CCCCceEEEEecchhHHhhc--C---CCceEecCCCCHHHHHHHHHHhh
Q 039644 80 FS------------Q----LESLMGSLDW--LTPVSRIILTTRNKQVLRNW--G---VSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 80 ~~------------~----~~~l~~~~~~--~~~~~~iivTtR~~~~~~~~--~---~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
.. . +..+...+.. ...+.-||.||......... . ....+.++.-+.++-.++|..+.
T Consensus 287 i~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 287 IGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp SSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred hcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 21 0 2223222221 22344566677665433222 1 23457788778888888887765
Q ss_pred cCCC-CCCccHHHHHHHHHHHhCCCchH-HHHHH-----HHhccC-C---HHHHHHHHHHHH
Q 039644 137 FKRN-HPDVGYEKLSSNVTKYAQGIPLA-LKVLS-----CFLHKR-E---KEVWESAIDKLQ 187 (192)
Q Consensus 137 ~~~~-~~~~~~~~~~~~i~~~~~g~Pla-i~~~~-----~~l~~~-~---~~~w~~~l~~l~ 187 (192)
..-. ..+..+ ..+++.+.|+--| |..+. ..++.. . .+..+.+++++.
T Consensus 367 ~~~~l~~dvdl----~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~ 424 (437)
T 4b4t_I 367 SKMNLSEDVNL----ETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVM 424 (437)
T ss_dssp TTSCBCSCCCH----HHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred cCCCCCCcCCH----HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHh
Confidence 3322 122233 4566777776433 22221 122322 1 566666666554
No 64
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.48 E-value=0.078 Score=35.39 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=21.6
Q ss_pred EEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecc
Q 039644 70 VLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRN 105 (192)
Q Consensus 70 ~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~ 105 (192)
..|+||+++... ....+...+.......++|.||..
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 468999998553 233444333333445678888764
No 65
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.14 Score=40.83 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.2
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+|||.||+.+++.....|
T Consensus 217 tGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 217 TGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp TTHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHHhCCCe
Confidence 699999999999876544
No 66
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.37 E-value=0.22 Score=43.02 Aligned_cols=137 Identities=16% Similarity=0.162 Sum_probs=70.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--cC-chHHHHhhcCCceEEEEEeCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--MP-YIDLNFRRLSRMKVLIVFDDV 77 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~-~~~~l~~~l~~~~~LlVlDdv 77 (192)
+|||+||+.++.+...+| +.++ .+ ++. ..... .. +...+.......+++|+||++
T Consensus 249 TGKT~LAraiA~elg~~~---~~v~-~~----------~l~--------sk~~gese~~lr~lF~~A~~~~PsIIfIDEi 306 (806)
T 3cf2_A 249 TGKTLIARAVANETGAFF---FLIN-GP----------EIM--------SKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp SCHHHHHHHHHTTTTCEE---EEEE-HH----------HHH--------SSCTTHHHHHHHHHHHHHTTSCSEEEEEESG
T ss_pred CCHHHHHHHHHHHhCCeE---EEEE-hH----------Hhh--------cccchHHHHHHHHHHHHHHHcCCeEEEEehh
Confidence 699999999999876543 2332 11 111 11111 01 222233333567899999999
Q ss_pred CCch--------h-----HHHhhccCCCC--CCCceEEEEecchhHHhhc-----CCCceEecCCCCHHHHHHHHHHhhc
Q 039644 78 TCFS--------Q-----LESLMGSLDWL--TPVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 78 ~~~~--------~-----~~~l~~~~~~~--~~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~~ea~~lf~~~~~ 137 (192)
+... . ...+...+... ..+.-||-+|......... .....+.++..+..+-.++|..+..
T Consensus 307 Dal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~ 386 (806)
T 3cf2_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp GGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCS
T ss_pred cccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhc
Confidence 7421 1 12222222111 1233344455544322111 1245788888888888888877653
Q ss_pred CCC-CCCccHHHHHHHHHHHhCCCchH
Q 039644 138 KRN-HPDVGYEKLSSNVTKYAQGIPLA 163 (192)
Q Consensus 138 ~~~-~~~~~~~~~~~~i~~~~~g~Pla 163 (192)
... ..+.. ...+++.+.|+--|
T Consensus 387 ~~~~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 387 NMKLADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp SSEECTTCC----HHHHHHHCCSCCHH
T ss_pred CCCCCcccC----HHHHHHhcCCCCHH
Confidence 221 11222 34567777777543
No 67
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.35 E-value=0.31 Score=35.79 Aligned_cols=15 Identities=33% Similarity=0.262 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||++|+.+++...
T Consensus 40 tGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 40 TGKELIASRLHYLSS 54 (265)
T ss_dssp SCHHHHHHHHHHTST
T ss_pred CcHHHHHHHHHHhcC
Confidence 699999999998654
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.10 E-value=0.23 Score=43.13 Aligned_cols=67 Identities=10% Similarity=0.061 Sum_probs=34.4
Q ss_pred CceEEEEEeCCCCch---------h-HHHhhccCCCCCCCceEEEEecchhHHhh-----c-CCCceEecCCCCHHHHHH
Q 039644 67 RMKVLIVFDDVTCFS---------Q-LESLMGSLDWLTPVSRIILTTRNKQVLRN-----W-GVSKIYEMEALEYHHALE 130 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~~~~iivTtR~~~~~~~-----~-~~~~~~~l~~l~~~ea~~ 130 (192)
+.+.+|+||+++... + ...+...+. ..+..+|.+|........ . .....+.+++.+.++..+
T Consensus 262 ~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~ 339 (854)
T 1qvr_A 262 QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETIS 339 (854)
T ss_dssp CSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHH
T ss_pred CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHH
Confidence 367899999997542 1 112222221 123345555544332111 1 223458899999999998
Q ss_pred HHHHh
Q 039644 131 LFSQH 135 (192)
Q Consensus 131 lf~~~ 135 (192)
++...
T Consensus 340 iL~~~ 344 (854)
T 1qvr_A 340 ILRGL 344 (854)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88643
No 69
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.93 E-value=0.9 Score=33.76 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=59.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhc-CCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRL-SRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 79 (192)
+||||||+.++..... ..+.+. ..+.... ...+..+ .+..+.... ...++++++|+++.
T Consensus 55 tGKTtLakala~~~~~---~~i~i~-g~~l~~~--~~~~~~~--------------~i~~vf~~a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 55 CGKTLLAKAVANESGL---NFISVK-GPELLNM--YVGESER--------------AVRQVFQRAKNSAPCVIFFDEVDA 114 (274)
T ss_dssp SCHHHHHHHHHHHTTC---EEEEEE-TTTTCSS--TTHHHHH--------------HHHHHHHHHHHTCSEEEEEETCTT
T ss_pred CcHHHHHHHHHHHcCC---CEEEEE-cHHHHhh--hhhHHHH--------------HHHHHHHHHHhcCCCeEeeehhhh
Confidence 6999999999997643 234444 2221111 1111111 111112221 23578999999974
Q ss_pred ch-------------hHHHhhccCCCCC--CCceEEEEecchhHHhhc-----CCCceEecCCCCHHHHHHHHHHhh
Q 039644 80 FS-------------QLESLMGSLDWLT--PVSRIILTTRNKQVLRNW-----GVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 80 ~~-------------~~~~l~~~~~~~~--~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
.. ....+...+.... ...-++.+|......... .....+.++..+.++-.+++....
T Consensus 115 ~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 115 LCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred hhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 21 1122222222211 223344466655433221 235667888888888888887765
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.47 E-value=0.053 Score=37.21 Aligned_cols=16 Identities=44% Similarity=0.515 Sum_probs=13.6
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||+||+.+++....
T Consensus 54 ~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 54 VGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp GCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5999999999997643
No 71
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.79 E-value=1.1 Score=33.92 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||++|+.+++..
T Consensus 36 tGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 36 TGKELVARALHACS 49 (304)
T ss_dssp SCHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhC
Confidence 69999999999864
No 72
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.25 E-value=1.1 Score=36.44 Aligned_cols=69 Identities=13% Similarity=0.270 Sum_probs=38.0
Q ss_pred ceEEEEEeCCCCc------------hh----HHHhhccCCCCC--CCceEEEEecchhHHhhc-----CCCceEecCCCC
Q 039644 68 MKVLIVFDDVTCF------------SQ----LESLMGSLDWLT--PVSRIILTTRNKQVLRNW-----GVSKIYEMEALE 124 (192)
Q Consensus 68 ~~~LlVlDdv~~~------------~~----~~~l~~~~~~~~--~~~~iivTtR~~~~~~~~-----~~~~~~~l~~l~ 124 (192)
.++++++|+++.. .. ...+...+.... .+..++.+|......... .....+.++..+
T Consensus 123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd 202 (499)
T 2dhr_A 123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202 (499)
T ss_dssp SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCC
T ss_pred CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCC
Confidence 4689999999532 11 233333332222 233344455555432211 124578888888
Q ss_pred HHHHHHHHHHhh
Q 039644 125 YHHALELFSQHA 136 (192)
Q Consensus 125 ~~ea~~lf~~~~ 136 (192)
.++-.+++..+.
T Consensus 203 ~~~R~~IL~~~~ 214 (499)
T 2dhr_A 203 VKGREQILRIHA 214 (499)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 888888887665
No 73
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.16 E-value=1.2 Score=32.26 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=25.4
Q ss_pred CceEecCCCCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHhCCCc
Q 039644 115 SKIYEMEALEYHHALELFSQHAFKRNH-PDVGYEKLSSNVTKYAQGIP 161 (192)
Q Consensus 115 ~~~~~l~~l~~~ea~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 161 (192)
...+.++..+.++-.+++......... .+.. ...+.+.+.|.-
T Consensus 178 ~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 178 DRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp CEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 456888888888888888765522211 1111 234666676654
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.02 E-value=1.5 Score=37.42 Aligned_cols=69 Identities=9% Similarity=0.139 Sum_probs=39.0
Q ss_pred CceEEEEEeCCCCc----------hhHHHhhccCCCCCCCceEEEEecchhHHhhc-------CCCceEecCCCCHHHHH
Q 039644 67 RMKVLIVFDDVTCF----------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNW-------GVSKIYEMEALEYHHAL 129 (192)
Q Consensus 67 ~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~-------~~~~~~~l~~l~~~ea~ 129 (192)
..+.+|++|+++.. .+...+...+.. ..+..+|.+|......... ..-..+.+...+.++..
T Consensus 277 ~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~ 355 (758)
T 1r6b_X 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETV 355 (758)
T ss_dssp SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHH
T ss_pred cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHH
Confidence 35789999999854 112222222222 2345566666543321111 11236889999999988
Q ss_pred HHHHHhh
Q 039644 130 ELFSQHA 136 (192)
Q Consensus 130 ~lf~~~~ 136 (192)
+++....
T Consensus 356 ~il~~l~ 362 (758)
T 1r6b_X 356 QIINGLK 362 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877543
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.83 E-value=1.3 Score=32.67 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=26.2
Q ss_pred CCceEecCCCCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHhCCCc
Q 039644 114 VSKIYEMEALEYHHALELFSQHAFKRNH-PDVGYEKLSSNVTKYAQGIP 161 (192)
Q Consensus 114 ~~~~~~l~~l~~~ea~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 161 (192)
....+.++..+.++-.+++....-.... ++.. ...+...+.|..
T Consensus 201 f~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 201 FDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp SCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 3457888888888888888765522211 1111 234666677765
No 76
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.73 E-value=0.79 Score=32.25 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||||+..++. . .-..++|++
T Consensus 31 sGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 31 SGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp SSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred CCHHHHHHHHHH--H-cCCcEEEEE
Confidence 699999999998 2 224567776
No 77
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.43 E-value=0.12 Score=39.22 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=17.8
Q ss_pred CchhHHHHHHHHHhh-CCCcceEEEe
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~wv~ 25 (192)
+|||+||..+++... ..-..+.++.
T Consensus 163 tGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 163 IGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp SSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 699999999999765 4433444553
No 78
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.36 E-value=1.1 Score=36.12 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=34.5
Q ss_pred CceEEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHh---h----cCCCceEecCCCCHHHHHHHHHHhh
Q 039644 67 RMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR---N----WGVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 67 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~---~----~~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
..+.+|++| -.......+...+. .+..++|.+|....... . ...-..+.+++.+.++..+++....
T Consensus 266 ~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 266 AGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 567889999 22222233433332 12345555554433111 0 0123468999999999999998654
No 79
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=91.14 E-value=4 Score=31.03 Aligned_cols=98 Identities=12% Similarity=-0.049 Sum_probs=62.8
Q ss_pred CceEEEEEeCCCC-c--hhHHHhhccCCCCCCCceEEEEecc-------hhHHhhc-CCCceEecCCCCHHHHHHHHHHh
Q 039644 67 RMKVLIVFDDVTC-F--SQLESLMGSLDWLTPVSRIILTTRN-------KQVLRNW-GVSKIYEMEALEYHHALELFSQH 135 (192)
Q Consensus 67 ~~~~LlVlDdv~~-~--~~~~~l~~~~~~~~~~~~iivTtR~-------~~~~~~~-~~~~~~~l~~l~~~ea~~lf~~~ 135 (192)
+.+-++|+|+++. . ..++.+...+.+..+++.+|+++.. ..+.... +....++..+++..+....+...
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4566889999875 3 4567776666655567777777643 1233332 45678999999999888777665
Q ss_pred hcCCCCCCccHHHHHHHHHHHhCCCchHHHH
Q 039644 136 AFKRNHPDVGYEKLSSNVTKYAQGIPLALKV 166 (192)
Q Consensus 136 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 166 (192)
+-... -.-..+.+..+++.++|.+.++..
T Consensus 155 ~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLN--LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTT--CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcC--CCCCHHHHHHHHHHhchHHHHHHH
Confidence 53221 122345566777778887776554
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.70 E-value=1.2 Score=38.61 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||++|+.+++....
T Consensus 599 tGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 599 VGKTELAKTLAATLFD 614 (854)
T ss_dssp SSHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcC
Confidence 6999999999997643
No 81
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.70 E-value=0.088 Score=36.86 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=24.2
Q ss_pred HHhhcCCceEEEEEeCCCCc-hhHHHhhccCCCCCCCceEEEEecc
Q 039644 61 NFRRLSRMKVLIVFDDVTCF-SQLESLMGSLDWLTPVSRIILTTRN 105 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~-~~~~~l~~~~~~~~~~~~iivTtR~ 105 (192)
+...+.+..-+|++|.+... .+|......+.+ .+..|++|.+.
T Consensus 69 ~~~~~~~~~dvviIDE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~ 112 (184)
T 2orw_A 69 MRKYIEEDTRGVFIDEVQFFNPSLFEVVKDLLD--RGIDVFCAGLD 112 (184)
T ss_dssp GGGGCCTTEEEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEEES
T ss_pred HHHHhcCCCCEEEEECcccCCHHHHHHHHHHHH--CCCCEEEEeec
Confidence 33444445669999998754 233333222221 26778888774
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.67 E-value=0.13 Score=34.13 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=19.9
Q ss_pred EEEEEeCCCCch--hHHHhhccCCCC-CCCceEEEEecc
Q 039644 70 VLIVFDDVTCFS--QLESLMGSLDWL-TPVSRIILTTRN 105 (192)
Q Consensus 70 ~LlVlDdv~~~~--~~~~l~~~~~~~-~~~~~iivTtR~ 105 (192)
-.++||+++... ....+...+... ..+.++|.||..
T Consensus 77 ~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 77 GVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 478999998653 223333222211 345678887753
No 83
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.50 E-value=0.46 Score=38.39 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=16.8
Q ss_pred CchhHHHHHHHHHhhCCCc-ceEEE
Q 039644 1 IGKTAIARAIFDKISGDFE-CSCFL 24 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~-~~~wv 24 (192)
+|||||+..+.......+. ..++.
T Consensus 162 vGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 162 VGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CCccHHHHHHHhhhhhccCcEEEEe
Confidence 6999999999987654443 33443
No 84
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.06 E-value=0.1 Score=40.09 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=16.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+||.+++.. .-..+.|++
T Consensus 134 sGKTtLAlqlA~~---~G~~VlyIs 155 (331)
T 2vhj_A 134 SGKTPLVHALGEA---LGGKDKYAT 155 (331)
T ss_dssp SSHHHHHHHHHHH---HHTTSCCEE
T ss_pred CCHHHHHHHHHHh---CCCCEEEEE
Confidence 6999999999886 112346666
No 85
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.65 E-value=0.59 Score=39.95 Aligned_cols=21 Identities=10% Similarity=0.098 Sum_probs=15.8
Q ss_pred ceEecCCCCHHHHHHHHHHhh
Q 039644 116 KIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 116 ~~~~l~~l~~~ea~~lf~~~~ 136 (192)
..+.+.+++.++...++....
T Consensus 646 ~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 646 NIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred cceeeCCCCHHHHHHHHHHHH
Confidence 568889999888777776543
No 86
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=87.66 E-value=0.18 Score=39.92 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+|||||+..+++.+.+..
T Consensus 185 ~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 185 AGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp SSHHHHHHHHHHHHHHHC
T ss_pred CChhHHHHHHHHHHhhcC
Confidence 599999999998765433
No 87
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=87.16 E-value=1.6 Score=35.28 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=26.5
Q ss_pred CchhHHHHHHHHHhh-CCCcceEEEeeccccccCCCChHHHHHHHHHH
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCFLENVREESQRPGGLACLRQKLLSN 47 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~ 47 (192)
+|||+|+.+++..+. .+-+.++++- +++. +....+++..+...
T Consensus 164 ~GKT~L~~~i~~~~~~~~~~v~V~~~-iGER---~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 164 VGKTVLIMELINNVAKAHGGYSVFAG-VGER---TREGNDLYHEMIES 207 (482)
T ss_dssp SSHHHHHHHHHHHTTTTCSSEEEEEE-ESCC---HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhhHhhCCCEEEEEE-CCCc---chHHHHHHHHhhhc
Confidence 699999999999763 3334455543 3331 13466666666543
No 88
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.87 E-value=2.8 Score=35.81 Aligned_cols=67 Identities=9% Similarity=0.067 Sum_probs=35.6
Q ss_pred CCceEEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHhhc-------CCCceEecCCCCHHHHHHHHHHhh
Q 039644 66 SRMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNW-------GVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~~~-------~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
...+.+|++| ........+...+. ....++|.+|......... ..-..+.++..+.++..+++....
T Consensus 265 ~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 265 QAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4567899999 22222233333332 2334566655443311100 122568999999999999998654
No 89
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.77 E-value=2.3 Score=32.68 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHHhhC------CCcceEEEe
Q 039644 1 IGKTAIARAIFDKISG------DFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~------~F~~~~wv~ 25 (192)
+|||+||.+++..... .-..++|++
T Consensus 133 sGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 133 TGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 6999999999986432 224677887
No 90
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=85.60 E-value=1.9 Score=35.04 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=27.4
Q ss_pred CchhHHHHHHHHHhh-CCCcceEEEeeccccccCCCChHHHHHHHHH
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCFLENVREESQRPGGLACLRQKLLS 46 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~ 46 (192)
+|||+|+.++++.+. .+-+.++++- +++- .....+++.++..
T Consensus 176 vGKT~L~~~l~~~~a~~~~~v~V~~~-iGER---~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 176 VGKTVLIMELINNIAKAHGGVSVFGG-VGER---TREGNDLYMEMKE 218 (498)
T ss_dssp SSHHHHHHHHHHHTTTTCSSCEEEEE-ESCC---SHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhhCCCEEEEEE-cccC---cHHHHHHHHhhhc
Confidence 699999999999764 4445566664 4331 1356677766654
No 91
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.89 E-value=2.3 Score=29.89 Aligned_cols=25 Identities=8% Similarity=0.003 Sum_probs=18.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||.++.+++.++.+...++...
T Consensus 11 sGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 11 SGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6999999999998876544444443
No 92
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.39 E-value=0.44 Score=32.47 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+..++.
T Consensus 14 sGKST~a~~La~~l~ 28 (178)
T 1qhx_A 14 AGKSGIVRCLQSVLP 28 (178)
T ss_dssp SSHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHhcC
Confidence 699999999999864
No 93
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=84.18 E-value=2.3 Score=34.20 Aligned_cols=75 Identities=13% Similarity=0.048 Sum_probs=41.4
Q ss_pred CchhHHHHHHHHHhhCCCc----ceEEEeeccccccCCCChHHHHHHHHHHH--h------cCCCC--cC------chHH
Q 039644 1 IGKTAIARAIFDKISGDFE----CSCFLENVREESQRPGGLACLRQKLLSNI--L------KDKNV--MP------YIDL 60 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~----~~~wv~~~~~~~~~~~~~~~~~~~l~~~~--~------~~~~~--~~------~~~~ 60 (192)
+|||+|+.++++....+.+ .++++- +++.. ....++...+...= . ...++ .. ..-.
T Consensus 162 ~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-iGeR~---~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~t 237 (465)
T 3vr4_D 162 LPHKELAAQIARQATVLDSSDDFAVVFAA-IGITF---EEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALT 237 (465)
T ss_dssp SCHHHHHHHHHHHCBCSSCSSCEEEEEEE-EEECH---HHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHhccCCCceEEEEEE-ecCCc---HHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHH
Confidence 6999999999987655333 344443 33311 34666666654421 0 11111 11 2223
Q ss_pred HHhhc---CCceEEEEEeCCCC
Q 039644 61 NFRRL---SRMKVLIVFDDVTC 79 (192)
Q Consensus 61 l~~~l---~~~~~LlVlDdv~~ 79 (192)
+.+++ .+++.|+++||+..
T Consensus 238 iAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 238 AAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHhcCCeEEEEEcChHH
Confidence 44444 36899999999953
No 94
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.14 E-value=6.7 Score=33.89 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=16.2
Q ss_pred ceEecCCCCHHHHHHHHHHhh
Q 039644 116 KIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 116 ~~~~l~~l~~~ea~~lf~~~~ 136 (192)
..+.+...+.++-.+++...+
T Consensus 365 ~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 365 REVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECCCCCCHHHHHHHHHHTT
T ss_pred cccccCCCCHHHHHHHHHHHH
Confidence 457788888888888887665
No 95
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=83.61 E-value=0.15 Score=40.31 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.6
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||+|+.++++.+..
T Consensus 186 ~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 186 AGKTTILKEIANGIAE 201 (427)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhh
Confidence 6999999999997654
No 96
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=82.74 E-value=2.5 Score=29.94 Aligned_cols=20 Identities=20% Similarity=0.637 Sum_probs=16.4
Q ss_pred CchhHHHHHHHHHhhCCCcc
Q 039644 1 IGKTAIARAIFDKISGDFEC 20 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~ 20 (192)
+||||+++.+++.+...++.
T Consensus 13 sGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 13 SGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp SCHHHHHHHHHHHHTTTSCE
T ss_pred CcHHHHHHHHHHHHHCCCCE
Confidence 69999999999988665544
No 97
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.59 E-value=1.6 Score=34.87 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=14.4
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+|||+||+.+++.+...
T Consensus 74 tGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 74 TGKTALALAIAQELGSK 90 (456)
T ss_dssp SSHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHhCCC
Confidence 69999999999987543
No 98
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=82.47 E-value=1.4 Score=35.87 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=11.4
Q ss_pred CCceEEEEEeCCC
Q 039644 66 SRMKVLIVFDDVT 78 (192)
Q Consensus 66 ~~~~~LlVlDdv~ 78 (192)
.+++.|+++||+.
T Consensus 252 ~G~dVLl~~Dslt 264 (502)
T 2qe7_A 252 KGKHALVVYDDLS 264 (502)
T ss_dssp TTCEEEEEEECHH
T ss_pred cCCcEEEEEecHH
Confidence 4789999999994
No 99
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.72 E-value=0.67 Score=31.20 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=13.2
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+..++.
T Consensus 12 sGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 12 CFKSTVAAKLSKELK 26 (173)
T ss_dssp SSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998764
No 100
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=81.20 E-value=0.45 Score=36.96 Aligned_cols=51 Identities=6% Similarity=0.049 Sum_probs=35.8
Q ss_pred chHHHHhhcCCceEEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecchhHHh
Q 039644 57 YIDLNFRRLSRMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR 110 (192)
Q Consensus 57 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~~~~ 110 (192)
....+...|...+=+|++|...+.+.++.+.... ..|.-|++|+.......
T Consensus 185 ~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 185 FSEALRSALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred HHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 4557888888899999999999766655544331 23555888887766553
No 101
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=81.18 E-value=1.7 Score=35.42 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=11.9
Q ss_pred CCceEEEEEeCCCC
Q 039644 66 SRMKVLIVFDDVTC 79 (192)
Q Consensus 66 ~~~~~LlVlDdv~~ 79 (192)
.+++.|+++||+..
T Consensus 260 ~G~dVLli~Dsltr 273 (510)
T 2ck3_A 260 NGKHALIIYDDLSK 273 (510)
T ss_dssp TTCEEEEEEETHHH
T ss_pred cCCcEEEEEcCHHH
Confidence 47899999999953
No 102
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=81.14 E-value=1.3 Score=36.14 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=11.8
Q ss_pred CCceEEEEEeCCCC
Q 039644 66 SRMKVLIVFDDVTC 79 (192)
Q Consensus 66 ~~~~~LlVlDdv~~ 79 (192)
.+++.|+++||+..
T Consensus 265 ~G~dVLli~DslTr 278 (515)
T 2r9v_A 265 SGRDALVVYDDLSK 278 (515)
T ss_dssp TTCEEEEEEETHHH
T ss_pred cCCcEEEEeccHHH
Confidence 47899999999953
No 103
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=80.88 E-value=3.3 Score=33.70 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.4
Q ss_pred CCceEEEEEeCCCCc
Q 039644 66 SRMKVLIVFDDVTCF 80 (192)
Q Consensus 66 ~~~~~LlVlDdv~~~ 80 (192)
.+++.|+++||+...
T Consensus 253 ~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 253 RERHTLIIYDDLSKQ 267 (507)
T ss_dssp TTCEEEEEEECHHHH
T ss_pred cCCcEEEEEecHHHH
Confidence 589999999998543
No 104
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=80.46 E-value=5.4 Score=32.49 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=12.0
Q ss_pred CCceEEEEEeCCCC
Q 039644 66 SRMKVLIVFDDVTC 79 (192)
Q Consensus 66 ~~~~~LlVlDdv~~ 79 (192)
.+++.||++||+..
T Consensus 252 ~G~dVLli~Dsltr 265 (513)
T 3oaa_A 252 RGEDALIIYDDLSK 265 (513)
T ss_dssp TTCEEEEEEETHHH
T ss_pred cCCCEEEEecChHH
Confidence 57899999999953
No 105
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.27 E-value=1.5 Score=29.97 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+|+.+++++..
T Consensus 12 sGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 12 VGKSTVLAKVKEILDN 27 (194)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6999999999998764
No 106
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.13 E-value=2.1 Score=32.37 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||+||.+++...
T Consensus 109 sGKT~la~~la~~~ 122 (322)
T 2i1q_A 109 SGKTQIMHQSCVNL 122 (322)
T ss_dssp SSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999853
No 107
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=79.90 E-value=0.84 Score=31.29 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.++.++.
T Consensus 16 sGKst~a~~La~~l~ 30 (185)
T 3trf_A 16 AGKTSVGSQLAKLTK 30 (185)
T ss_dssp SSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998763
No 108
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=79.71 E-value=1.9 Score=30.04 Aligned_cols=18 Identities=28% Similarity=0.141 Sum_probs=14.8
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+||||+|+.+...+...+
T Consensus 15 sGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 15 SGKSSQATLLKDWIELKR 32 (213)
T ss_dssp SSHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHhhcC
Confidence 699999999999875443
No 109
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=78.96 E-value=0.96 Score=31.59 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=13.2
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.++..+.
T Consensus 36 sGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 36 AGKTTLGKAFARKLN 50 (199)
T ss_dssp SCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999998763
No 110
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=78.49 E-value=0.86 Score=31.63 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.+++.+.
T Consensus 11 sGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 11 AGKSTISAEISKKLG 25 (205)
T ss_dssp SCHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHhcC
Confidence 699999999999764
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=77.51 E-value=5.9 Score=28.35 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=42.0
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCC--cCchHHHHhhcCCceEEEEEeCC
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLENVREESQRPGGLACLRQKLLSNILKDKNV--MPYIDLNFRRLSRMKVLIVFDDV 77 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~~l~~~~~LlVlDdv 77 (192)
.||||.+...+.+...+ +...++-..... . .... .+...++..... ......+...+.+.--+|++|.+
T Consensus 39 sGKTT~lL~~a~r~~~~g~kVli~k~~~d~---R-~ge~----~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViIDEa 110 (214)
T 2j9r_A 39 SGKSEELIRRVRRTQFAKQHAIVFKPCIDN---R-YSEE----DVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAIDEV 110 (214)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEECC-------------------------CCEEECSSGGGGGGGCCSSCCEEEECCG
T ss_pred CcHHHHHHHHHHHHHHCCCEEEEEEeccCC---c-chHH----HHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEEECc
Confidence 59999999999876443 344443321111 0 1111 222222111111 11122333333333338999988
Q ss_pred CC--chhHHHhhccCCCCCCCceEEEEecc
Q 039644 78 TC--FSQLESLMGSLDWLTPVSRIILTTRN 105 (192)
Q Consensus 78 ~~--~~~~~~l~~~~~~~~~~~~iivTtR~ 105 (192)
.- .++++.+.. +.+ .+..||+|.+.
T Consensus 111 QF~~~~~V~~l~~-l~~--~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 111 QFFDGDIVEVVQV-LAN--RGYRVIVAGLD 137 (214)
T ss_dssp GGSCTTHHHHHHH-HHH--TTCEEEEEECS
T ss_pred ccCCHHHHHHHHH-Hhh--CCCEEEEEecc
Confidence 63 344544332 111 26689999884
No 112
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=77.28 E-value=1 Score=30.61 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.++.++.
T Consensus 15 sGKsTla~~La~~l~ 29 (175)
T 1via_A 15 SGKSTLARALAKDLD 29 (175)
T ss_dssp SCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999998764
No 113
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=76.88 E-value=16 Score=29.14 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||++..++..+..+
T Consensus 111 ~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 111 SGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 69999999999866544
No 114
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=76.10 E-value=5.7 Score=30.01 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=18.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||.+++......-..++|++
T Consensus 79 ~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 79 MGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 6999999999986543335677776
No 115
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=75.91 E-value=1.9 Score=30.03 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=15.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||||++.++..+ +.++++
T Consensus 40 sGKSTl~~~L~~~~-----g~~~i~ 59 (200)
T 4eun_A 40 SGKTTIAHGVADET-----GLEFAE 59 (200)
T ss_dssp SCHHHHHHHHHHHH-----CCEEEE
T ss_pred CCHHHHHHHHHHhh-----CCeEEc
Confidence 69999999999876 345554
No 116
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=75.80 E-value=2 Score=29.93 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++..+.
T Consensus 36 sGKSTl~~~La~~l~ 50 (200)
T 3uie_A 36 SGKSTLACALNQMLY 50 (200)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999999775
No 117
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=75.71 E-value=1.8 Score=30.21 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+|+.+++.+...
T Consensus 20 sGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 20 AGKSTQSRKLVEALCAA 36 (215)
T ss_dssp SSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 69999999999986543
No 118
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=75.56 E-value=1.2 Score=30.01 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++..+.
T Consensus 15 sGKSTl~~~La~~l~ 29 (173)
T 1kag_A 15 AGKSTIGRQLAQQLN 29 (173)
T ss_dssp SCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998754
No 119
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.32 E-value=2.1 Score=29.30 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+++.++..+..
T Consensus 24 sGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 24 SGKTTIATRLADLLQK 39 (186)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6999999999997653
No 120
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=75.24 E-value=1.3 Score=30.04 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=11.2
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+||||+|+.+..
T Consensus 13 sGKST~a~~L~~ 24 (181)
T 1ly1_A 13 SGKSTWAREFIA 24 (181)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 699999999988
No 121
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=75.08 E-value=1.5 Score=29.55 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.++.++.
T Consensus 18 sGKSTva~~La~~lg 32 (168)
T 1zuh_A 18 SGKSSLAQELGLALK 32 (168)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998764
No 122
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=75.04 E-value=1.4 Score=30.65 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++..+
T Consensus 29 sGKSTla~~L~~~l 42 (202)
T 3t61_A 29 SGKSSVGEAIAEAC 42 (202)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999876
No 123
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=74.92 E-value=1.4 Score=32.29 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||||+.++.+..
T Consensus 12 SGKSTla~~La~~~~ 26 (253)
T 2ze6_A 12 SGKTDMAIQIAQETG 26 (253)
T ss_dssp SSHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHhcCC
Confidence 699999999998753
No 124
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=74.75 E-value=1.1 Score=30.49 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=10.4
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+..++.
T Consensus 16 sGKST~a~~La~~l~ 30 (183)
T 2vli_A 16 VGKTHTAHTLHERLP 30 (183)
T ss_dssp ---CHHHHHHHHHST
T ss_pred CCHHHHHHHHHHhcC
Confidence 699999999988754
No 125
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=74.49 E-value=9.5 Score=30.69 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||+|+.++++....
T Consensus 158 ~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 158 LPANEIAAQIARQATV 173 (464)
T ss_dssp SCHHHHHHHHHHHCBC
T ss_pred CCchHHHHHHHHHHHh
Confidence 6999999999987543
No 126
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=74.37 E-value=14 Score=27.27 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=24.7
Q ss_pred CCceEEEEecchhH-------------HhhcCCCceEecC--------CCCHHHHHHHHHHh
Q 039644 95 PVSRIILTTRNKQV-------------LRNWGVSKIYEME--------ALEYHHALELFSQH 135 (192)
Q Consensus 95 ~~~~iivTtR~~~~-------------~~~~~~~~~~~l~--------~l~~~ea~~lf~~~ 135 (192)
....+|+||..... ...-+....+... +++.++..+.|...
T Consensus 189 ~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 189 DPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp CCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH
T ss_pred cCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH
Confidence 45678888887211 1111233445555 78888888888754
No 127
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=74.25 E-value=2.2 Score=30.40 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=18.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||.+++......-..++|++
T Consensus 34 sGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 34 TGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 6999999999886543334567775
No 128
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=74.22 E-value=1.5 Score=29.98 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+++.+..++..
T Consensus 14 sGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 14 VGSTTSSQLAMDNLRK 29 (192)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6999999999997653
No 129
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=74.02 E-value=1.6 Score=29.95 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+..++
T Consensus 16 sGKST~~~~L~~~l 29 (193)
T 2rhm_A 16 TGKTTLSQALATGL 29 (193)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999999876
No 130
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=73.33 E-value=2.3 Score=32.93 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=19.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||.+++......-..++|++
T Consensus 74 sGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 74 SGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6999999999987544434678887
No 131
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=72.98 E-value=4.9 Score=27.48 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+++.+.+.+..
T Consensus 11 sGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 11 SGKSTQIQLLAQYLEK 26 (197)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999997643
No 132
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=72.75 E-value=2.1 Score=30.13 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=16.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||||++.++......-..+.|+.
T Consensus 34 sGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 34 TGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6999999999976433223455554
No 133
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=72.69 E-value=1.6 Score=29.94 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.+.....
T Consensus 16 sGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 16 VGRRHIKNTLITKHP 30 (180)
T ss_dssp SSHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHhhCC
Confidence 699999999998654
No 134
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=72.64 E-value=1.8 Score=28.95 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+.+.+.
T Consensus 11 sGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 11 SGKSTVGSLLSRSLN 25 (168)
T ss_dssp SCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998764
No 135
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=72.58 E-value=1.8 Score=29.53 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+..++.
T Consensus 13 sGKsT~a~~La~~lg 27 (184)
T 2iyv_A 13 SGKSTIGRRLAKALG 27 (184)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999998753
No 136
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=72.43 E-value=1.8 Score=29.69 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++..+
T Consensus 14 sGKsT~a~~L~~~~ 27 (196)
T 1tev_A 14 AGKGTQCARIVEKY 27 (196)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999998865
No 137
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=72.33 E-value=1.6 Score=29.77 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+++.++.++
T Consensus 22 sGKst~~~~l~~~~ 35 (180)
T 3iij_A 22 VGKTTLGKELASKS 35 (180)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999875
No 138
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=72.02 E-value=2.6 Score=32.52 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||.+++......=..++|++
T Consensus 72 sGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 72 SGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 6999999999986544334567876
No 139
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=71.92 E-value=1.7 Score=30.31 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=13.6
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+|+.+.+.+..
T Consensus 21 sGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 21 SGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999997643
No 140
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=71.83 E-value=1.7 Score=29.21 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+..++.
T Consensus 13 sGKsT~a~~La~~lg 27 (173)
T 1e6c_A 13 CGMTTVGRELARALG 27 (173)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998753
No 141
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=71.71 E-value=2.8 Score=33.84 Aligned_cols=74 Identities=15% Similarity=0.068 Sum_probs=40.0
Q ss_pred CchhHHHHHHHHHhhCCC----cceEEEeeccccccCCCChHHHHHHHHHHHh--------cCCCC--cC------chHH
Q 039644 1 IGKTAIARAIFDKISGDF----ECSCFLENVREESQRPGGLACLRQKLLSNIL--------KDKNV--MP------YIDL 60 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~--~~------~~~~ 60 (192)
+|||+|+.+++.....+. +.++++- +++.. ....++...+...-. ...++ .. ..-.
T Consensus 163 ~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~-iGER~---~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~t 238 (469)
T 2c61_A 163 LPHNEIALQIARQASVPGSESAFAVVFAA-MGITN---EEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALT 238 (469)
T ss_dssp SCHHHHHHHHHHHCBCTTCSSCEEEEEEE-EEECH---HHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCCCcEEEEEE-ccCCc---HHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHH
Confidence 699999999999754322 2334433 33311 346666666654310 11111 00 2222
Q ss_pred HHhhcC---CceEEEEEeCCC
Q 039644 61 NFRRLS---RMKVLIVFDDVT 78 (192)
Q Consensus 61 l~~~l~---~~~~LlVlDdv~ 78 (192)
+.++++ +++.|+++||+.
T Consensus 239 iAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 239 AAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHhcCCeEEEEEeCHH
Confidence 344443 589999999973
No 142
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=71.70 E-value=1.5 Score=30.12 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=11.7
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||++.++..
T Consensus 20 sGKSTl~~~La~~ 32 (191)
T 1zp6_A 20 SGKSTIAEALANL 32 (191)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhc
Confidence 6999999999886
No 143
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=71.40 E-value=3.6 Score=28.93 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=17.6
Q ss_pred CchhHHHHHHHHHhhC------CCcceEEEe
Q 039644 1 IGKTAIARAIFDKISG------DFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~------~F~~~~wv~ 25 (192)
+|||||++.++..... .-...+|+.
T Consensus 36 sGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 36 SGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp SSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 6999999999985332 123477776
No 144
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=71.00 E-value=2 Score=29.43 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+.+++.
T Consensus 11 sGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 11 SGKTTQAKKLYEYLK 25 (195)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999999764
No 145
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=70.93 E-value=2 Score=29.61 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+++++.
T Consensus 23 sGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 23 SGKGTQCEKLVEKYG 37 (199)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998763
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=70.86 E-value=2 Score=32.80 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=35.2
Q ss_pred ceEecCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 039644 116 KIYEMEALEYHHALELFSQHAFKRNHPDVGYEKLSSNVTKYAQGIPLALKVL 167 (192)
Q Consensus 116 ~~~~l~~l~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 167 (192)
-...+++.+.++..+++.+.+.... .....+.+..|++.+.|.|..+..+
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 4578999999999999987653211 1233456778889999998754433
No 147
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=70.82 E-value=1.9 Score=29.48 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+++++
T Consensus 15 sGKST~~~~La~~l 28 (186)
T 3cm0_A 15 AGKGTQASRLAQEL 28 (186)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999865
No 148
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=70.78 E-value=2.8 Score=32.02 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=50.1
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccC-CCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQR-PGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 79 (192)
+|||||++.++..+... .+.+.+.+....... ..+...+ +.+ ........+...+...+=+|++|.+.+
T Consensus 182 sGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~~~~~~i~~-------~~g--gg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 182 SGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFKHHKNYTQL-------FFG--GNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp SCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCSSCSSEEEE-------ECB--TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CCHHHHHHHHhCCCcCC-CcEEEECCeeccccccchhEEEE-------EeC--CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 59999999999866442 566666533221100 0000000 000 112244556677788888999999988
Q ss_pred chhHHHhhccCCCCCCCceEEEEecchh
Q 039644 80 FSQLESLMGSLDWLTPVSRIILTTRNKQ 107 (192)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~iivTtR~~~ 107 (192)
...++.+. .+.. .+.-+|+|+....
T Consensus 252 ~e~~~~l~-~~~~--g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 252 SEAYDFYN-VLCS--GHKGTLTTLHAGS 276 (330)
T ss_dssp THHHHHHH-HHHT--TCCCEEEEEECSS
T ss_pred HHHHHHHH-HHhc--CCCEEEEEEcccH
Confidence 55454433 2221 1222666765443
No 149
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=70.67 E-value=1.8 Score=29.76 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++..+
T Consensus 20 sGKsT~~~~La~~l 33 (196)
T 2c95_A 20 SGKGTQCEKIVQKY 33 (196)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999875
No 150
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=70.20 E-value=2.2 Score=29.65 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+...+.
T Consensus 31 sGKST~a~~La~~l~ 45 (201)
T 2cdn_A 31 AGKGTQAVKLAEKLG 45 (201)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998763
No 151
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=70.11 E-value=3.1 Score=32.30 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=18.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||.+++......-..++|++
T Consensus 72 sGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 72 SGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 6999999999987654333467776
No 152
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=69.76 E-value=3.1 Score=32.35 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=19.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+||.+++......-..++|++
T Consensus 85 sGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 85 GGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CChHHHHHHHHHHHHHCCCeEEEEE
Confidence 6999999999987544334678887
No 153
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=69.65 E-value=1.7 Score=30.43 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+...+.
T Consensus 11 sGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 11 AGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 599999999998764
No 154
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=69.63 E-value=2 Score=29.96 Aligned_cols=18 Identities=22% Similarity=0.615 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+|||||++.+..+....|
T Consensus 12 ~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 12 TGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp SSHHHHHHHHHHHCTTTE
T ss_pred CCHHHHHHHHHHhCCCCe
Confidence 699999999988765544
No 155
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=69.49 E-value=2 Score=30.20 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++..+.
T Consensus 33 sGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 33 SGKSTLSNPLAAALS 47 (208)
T ss_dssp SCTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 599999999998654
No 156
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=69.42 E-value=4.2 Score=28.87 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=18.2
Q ss_pred CchhHHHHHHHHHhhC------CCcceEEEe
Q 039644 1 IGKTAIARAIFDKISG------DFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~------~F~~~~wv~ 25 (192)
+|||||+..++..... .-..++|++
T Consensus 35 sGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 35 TGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp SSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 6999999999985322 124678886
No 157
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=69.30 E-value=3.7 Score=28.17 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+|||||+..+...++.+
T Consensus 15 sGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 15 SGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp SSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhhHhc
Confidence 59999999999987544
No 158
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=69.17 E-value=3 Score=18.57 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=13.8
Q ss_pred CCCchHHHHHHHHhccC
Q 039644 158 QGIPLALKVLSCFLHKR 174 (192)
Q Consensus 158 ~g~Plai~~~~~~l~~~ 174 (192)
.-+|||+.++++.+..+
T Consensus 9 rklplavav~agv~~aq 25 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCTHHHHHHHHTTCCC
T ss_pred ccCchHHHHHHHHhHhh
Confidence 46899999999987653
No 159
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=69.09 E-value=1.9 Score=28.85 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=10.3
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+||||+|+.+ .+
T Consensus 12 sGKsT~a~~L-~~ 23 (179)
T 3lw7_A 12 SGKSEFAKLL-KE 23 (179)
T ss_dssp SCHHHHHHHH-HH
T ss_pred CCHHHHHHHH-HH
Confidence 6999999999 44
No 160
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=68.61 E-value=2.6 Score=29.02 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=14.9
Q ss_pred CchhHHHHHHHHHhhCCCc
Q 039644 1 IGKTAIARAIFDKISGDFE 19 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~ 19 (192)
+|||||++.+...+...|.
T Consensus 12 aGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 12 TGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp SSHHHHHHHHHHHCGGGEE
T ss_pred CCHHHHHHHHHhhCCccce
Confidence 6999999999987654443
No 161
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=68.54 E-value=2.2 Score=28.80 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+++.++...
T Consensus 19 sGKSTl~~~l~~~~ 32 (175)
T 1knq_A 19 SGKSAVASEVAHQL 32 (175)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhh
Confidence 69999999998865
No 162
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=68.54 E-value=8.5 Score=27.27 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=14.5
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+++.+.+.+...
T Consensus 17 sGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 17 AGKSTNRDYLAERLRER 33 (213)
T ss_dssp SSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 69999999999987654
No 163
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=68.53 E-value=9.1 Score=29.38 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||..++..+...=..++|++
T Consensus 57 ~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 57 MGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6999999999987543324566775
No 164
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=68.49 E-value=2.1 Score=30.26 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.++..+.
T Consensus 15 sGKsT~a~~La~~l~ 29 (220)
T 1aky_A 15 AGKGTQAPNLQERFH 29 (220)
T ss_dssp SSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999998763
No 165
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=68.23 E-value=2.3 Score=29.21 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||++.++.
T Consensus 13 aGKSTl~~~L~~ 24 (189)
T 2bdt_A 13 VGKSTTCKRLAA 24 (189)
T ss_dssp SSHHHHHHHHHH
T ss_pred CcHHHHHHHHhc
Confidence 699999999986
No 166
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=67.95 E-value=2.3 Score=29.26 Aligned_cols=63 Identities=10% Similarity=0.148 Sum_probs=32.6
Q ss_pred cCCceEEEEEeCCCCch-----hHHHhhccCCCCCCCceEEEEec---chhHHhhc-CC--CceEecCCCCHHHHH
Q 039644 65 LSRMKVLIVFDDVTCFS-----QLESLMGSLDWLTPVSRIILTTR---NKQVLRNW-GV--SKIYEMEALEYHHAL 129 (192)
Q Consensus 65 l~~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~iivTtR---~~~~~~~~-~~--~~~~~l~~l~~~ea~ 129 (192)
+..++-+++||.+.... ..+.+...+.. .+..+|++|. ........ .. ...+.+...+.++..
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~ 169 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVIL 169 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHH
Confidence 55667799999953221 12333333332 3444677763 33333332 22 467777766654443
No 167
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=67.74 E-value=2.5 Score=29.65 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++.+.
T Consensus 11 sGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 11 AGKGTQAEQIIEKY 24 (216)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999998865
No 168
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=67.65 E-value=2.6 Score=28.76 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++..+
T Consensus 17 sGKsT~~~~L~~~l 30 (194)
T 1qf9_A 17 SGKGTQCANIVRDF 30 (194)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999875
No 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=67.56 E-value=2.4 Score=29.67 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++..+.
T Consensus 17 sGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 17 SGKTTLAQALARTLG 31 (211)
T ss_dssp SSHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998654
No 170
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=67.29 E-value=2.3 Score=30.10 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=13.2
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.++.++.
T Consensus 16 sGKsT~~~~La~~l~ 30 (222)
T 1zak_A 16 SGKGTQCELIKTKYQ 30 (222)
T ss_dssp SSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998764
No 171
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=67.04 E-value=4 Score=30.31 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHhhCCCc-ceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFE-CSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~-~~~wv~ 25 (192)
+|||||++.++..+...-. .+.|+.
T Consensus 46 ~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 46 MGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6999999999997543322 355654
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=66.59 E-value=2.6 Score=29.66 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||||++.++.....
T Consensus 19 sGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 19 VGKGTVREAVFKDPET 34 (208)
T ss_dssp SCHHHHHHHHHHSTTC
T ss_pred CCHHHHHHHHHhhCCC
Confidence 6999999999987653
No 173
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=66.58 E-value=2.5 Score=29.32 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=11.1
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+||||+++.++.
T Consensus 12 sGKSTl~~~L~~ 23 (204)
T 2if2_A 12 CGKSTVAQMFRE 23 (204)
T ss_dssp SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 699999999987
No 174
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=66.49 E-value=2.6 Score=29.23 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||++.++...
T Consensus 18 sGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 18 AGKTSLVRALVKAL 31 (205)
T ss_dssp SCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhhC
Confidence 69999999998864
No 175
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=66.32 E-value=3.5 Score=31.66 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=19.2
Q ss_pred CchhHHHHHHHHHhhCCC--cceEEEe
Q 039644 1 IGKTAIARAIFDKISGDF--ECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F--~~~~wv~ 25 (192)
+|||||+.+++......+ ..++|++
T Consensus 39 sGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 39 SFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp SSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 699999999998765442 4578887
No 176
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=66.13 E-value=2.6 Score=30.17 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=13.2
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+++++.
T Consensus 27 sGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 27 AGKGTQAPKLAKNFC 41 (233)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999998764
No 177
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=66.01 E-value=2.8 Score=29.55 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+...+
T Consensus 16 sGKSTl~~~L~~~~ 29 (227)
T 1cke_A 16 AGKGTLCKAMAEAL 29 (227)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999998864
No 178
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=65.99 E-value=2.8 Score=29.47 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++.++
T Consensus 11 sGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 11 AGKGTQGERIVEKY 24 (216)
T ss_dssp SSHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999998765
No 179
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=65.82 E-value=5.2 Score=30.30 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHhhCC------CcceEEEe
Q 039644 1 IGKTAIARAIFDKISGD------FECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~------F~~~~wv~ 25 (192)
+|||+||.+++...... -..++|++
T Consensus 118 sGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 118 SGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp SSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 69999999999865322 24578887
No 180
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=65.74 E-value=2.8 Score=29.06 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++++.
T Consensus 26 sGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 26 AGKGTQCEKLVKDY 39 (203)
T ss_dssp SSHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999999865
No 181
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=65.71 E-value=2.5 Score=30.04 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++.++
T Consensus 18 sGKsT~a~~La~~l 31 (227)
T 1zd8_A 18 SGKGTVSSRITTHF 31 (227)
T ss_dssp SSHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999999875
No 182
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=65.17 E-value=3 Score=30.08 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||++.+++++
T Consensus 38 sGKSTl~k~La~~l 51 (246)
T 2bbw_A 38 SGKGTVCQRIAQNF 51 (246)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999765
No 183
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=64.97 E-value=2.7 Score=29.07 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+++.+.+++
T Consensus 15 sGKsT~~~~L~~~l 28 (204)
T 2v54_A 15 SGKTTQCMNIMESI 28 (204)
T ss_dssp SSHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999876
No 184
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=64.59 E-value=6.3 Score=32.71 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=16.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+|+.++++.... +.++++-
T Consensus 243 ~GKT~L~~~ia~~~~~--~v~V~~~ 265 (600)
T 3vr4_A 243 AGKTVVQHQIAKWSDV--DLVVYVG 265 (600)
T ss_dssp SCHHHHHHHHHHHSSC--SEEEEEE
T ss_pred ccHHHHHHHHHhccCC--CEEEEEE
Confidence 6999999999886433 3455554
No 185
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=64.30 E-value=3 Score=28.89 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+++.+....
T Consensus 17 sGKSTl~~~L~~~~ 30 (207)
T 2j41_A 17 VGKGTVRKRIFEDP 30 (207)
T ss_dssp SCHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHhh
Confidence 69999999998865
No 186
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=64.26 E-value=3.2 Score=28.43 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=11.9
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+||||+++.+...
T Consensus 21 sGKSTv~~~La~~ 33 (184)
T 1y63_A 21 TGKTSMAEMIAAE 33 (184)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 6999999999987
No 187
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=64.19 E-value=3.3 Score=29.27 Aligned_cols=14 Identities=21% Similarity=0.142 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++.++
T Consensus 16 sGKsT~a~~La~~l 29 (217)
T 3be4_A 16 SGKGTQCEFIKKEY 29 (217)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999876
No 188
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=64.13 E-value=6.4 Score=32.57 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=23.1
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHH
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKL 44 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l 44 (192)
+|||+|+.++++.... +..+++- +++. .....+++..+
T Consensus 238 ~GKT~L~~~ia~~~~~--~~~V~~~-iGER---~~Ev~e~~~~~ 275 (588)
T 3mfy_A 238 SGKTVTQHQLAKWSDA--QVVIYIG-CGER---GNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHHHHHHHHSSC--SEEEEEE-CCSS---SSHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCC--CEEEEEE-eccc---HHHHHHHHHHH
Confidence 4999999998876432 3455554 3331 14566666665
No 189
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=64.10 E-value=3.3 Score=29.12 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++.++
T Consensus 11 sGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 11 AGKGTQAQFIMEKY 24 (214)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999876
No 190
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=64.01 E-value=3.2 Score=28.04 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||++.++.-+
T Consensus 44 aGKTTLlr~l~g~l 57 (158)
T 1htw_A 44 AGKTTLTRGMLQGI 57 (158)
T ss_dssp SSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhC
Confidence 59999999999965
No 191
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=63.99 E-value=3.1 Score=29.00 Aligned_cols=15 Identities=13% Similarity=0.554 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.+.....
T Consensus 23 sGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 23 VGKGTLIKKVLSEFP 37 (204)
T ss_dssp SCHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHhCc
Confidence 699999999998764
No 192
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=63.98 E-value=3.7 Score=30.62 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+..+..
T Consensus 44 sGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 44 SGKTSLRSAIFEETQ 58 (287)
T ss_dssp SCTHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999988653
No 193
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=63.74 E-value=5.3 Score=28.89 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=13.9
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+|..++......
T Consensus 17 vGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 17 VGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp SSHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHC
Confidence 69999999999975443
No 194
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=63.71 E-value=3.1 Score=30.07 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||++.++..+
T Consensus 36 sGKSTl~k~L~~~l 49 (245)
T 2jeo_A 36 SGKSTVCEKIMELL 49 (245)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999998854
No 195
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=63.69 E-value=10 Score=26.96 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=16.9
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEE
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFL 24 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv 24 (192)
+||||+++.+++.+... +..+.+.
T Consensus 14 sGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 14 AGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcceee
Confidence 69999999999976543 4333443
No 196
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=63.40 E-value=7.2 Score=27.70 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=16.8
Q ss_pred CchhHHHHHHHHH-hhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDK-ISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~-~~~~F~~~~wv~ 25 (192)
+|||+||.+++.. ....-..+++++
T Consensus 41 ~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 41 TGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCceeec
Confidence 6999999998765 333334455665
No 197
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=63.38 E-value=1.7 Score=37.51 Aligned_cols=116 Identities=14% Similarity=0.277 Sum_probs=53.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhc-CCceEEEEEeCCCC
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRL-SRMKVLIVFDDVTC 79 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 79 (192)
+|||.||+.++......| +. + ...+++ ....+.. ...+..+.... ...+++|.||+++.
T Consensus 522 tGKT~lAkaiA~e~~~~f-----~~-v--------~~~~l~----s~~vGes--e~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 522 CGKTLLAKAIANECQANF-----IS-I--------KGPELL----TMWFGES--EANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp SSHHHHHHHHHHTTTCEE-----EE-C--------CHHHHH----TTTCSSC--HHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred CCchHHHHHHHHHhCCce-----EE-e--------ccchhh----ccccchH--HHHHHHHHHHHHHcCCceeechhhhH
Confidence 599999999999875432 22 1 112211 1111110 11233333333 45789999999974
Q ss_pred ch----------------hHHHhhccCCCCCCCc-eEEE-EecchhH-----HhhcCCCceEecCCCCHHHHHHHHHHhh
Q 039644 80 FS----------------QLESLMGSLDWLTPVS-RIIL-TTRNKQV-----LRNWGVSKIYEMEALEYHHALELFSQHA 136 (192)
Q Consensus 80 ~~----------------~~~~l~~~~~~~~~~~-~iiv-TtR~~~~-----~~~~~~~~~~~l~~l~~~ea~~lf~~~~ 136 (192)
.- ....|...+....... .+|| +|..... .+...-...+.++.-+.++-.++|+.+.
T Consensus 582 l~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 582 IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred HhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 21 0233333333222222 2333 5544332 1111234567777666666667776554
No 198
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=62.81 E-value=3.6 Score=28.87 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.+...+.
T Consensus 36 sGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 36 SGKSTLAVELEHQLV 50 (211)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 699999999998764
No 199
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=62.78 E-value=3.4 Score=28.06 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.+...+.
T Consensus 16 sGKST~~~~L~~~l~ 30 (179)
T 2pez_A 16 AGKTTVSMALEEYLV 30 (179)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 699999999998764
No 200
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=62.62 E-value=3.5 Score=31.80 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+|||++|+.+++.+...
T Consensus 83 tGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 83 SGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp SSHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHhCCC
Confidence 69999999999987433
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=62.49 E-value=5.7 Score=27.59 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.+...+.
T Consensus 33 sGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 33 SGKTTLANQLSQTLR 47 (201)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 699999999998654
No 202
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=62.47 E-value=3.6 Score=29.21 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++.++
T Consensus 11 sGKsT~a~~La~~l 24 (223)
T 2xb4_A 11 SGKGTQGNLVKDKY 24 (223)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999876
No 203
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=62.10 E-value=3.5 Score=28.44 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=11.7
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+||||+|+.+...
T Consensus 19 sGKST~~~~La~~ 31 (203)
T 1uf9_A 19 SGKSTVAALLRSW 31 (203)
T ss_dssp SCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHC
Confidence 6999999999885
No 204
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=61.64 E-value=4.9 Score=28.66 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=15.8
Q ss_pred CchhHHHHHHHHHhh-CCCcceEEEe
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~wv~ 25 (192)
+|||||++.++.... ..-...+++.
T Consensus 41 sGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 41 TGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 699999999985321 2223455554
No 205
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=61.56 E-value=3.8 Score=31.47 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||++|+.+++...
T Consensus 62 tGKT~la~~ia~~~~ 76 (363)
T 3hws_A 62 SGKTLLAETLARLLD 76 (363)
T ss_dssp SSHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999999874
No 206
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=61.49 E-value=3.7 Score=29.51 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.+++.+.
T Consensus 13 ~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 13 VGKSTFVKLLTKTYP 27 (241)
T ss_dssp SSHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999999764
No 207
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=61.43 E-value=7.3 Score=27.33 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+...- .+.-++
T Consensus 12 vGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 12 VGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp SSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred CcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 699999999999876654 555554
No 208
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=61.14 E-value=4.2 Score=28.13 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.++..+.
T Consensus 13 sGKst~~~~la~~lg 27 (208)
T 3ake_A 13 SGKSSVARRVAAALG 27 (208)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcC
Confidence 699999999988653
No 209
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=61.03 E-value=5 Score=32.02 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+||.+++......=..++|++
T Consensus 208 ~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 208 MGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CChHHHHHHHHHHHHHcCCEEEEEE
Confidence 6999999999997543323566765
No 210
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=60.61 E-value=3.9 Score=28.83 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||||++.+......
T Consensus 30 aGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 30 VGRSHIKNALLSQNPE 45 (197)
T ss_dssp SSHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHhhCCc
Confidence 6999999999986543
No 211
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=60.58 E-value=6.5 Score=27.07 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+...-..+.-++
T Consensus 13 ~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 13 SGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6999999999997665433455555
No 212
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=60.55 E-value=3.8 Score=29.97 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.++..+.
T Consensus 15 SGKSTla~~La~~L~ 29 (260)
T 3a4m_A 15 VGKSTFSKNLAKILS 29 (260)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998754
No 213
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=60.55 E-value=4.1 Score=30.52 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||||+.+...+.
T Consensus 42 sGKSTla~~L~~~l~ 56 (290)
T 1odf_A 42 SGKSFTSIQIYNHLM 56 (290)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhh
Confidence 699999999988654
No 214
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=60.47 E-value=4.1 Score=29.53 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+...+.
T Consensus 33 SGKST~a~~L~~~lg 47 (252)
T 1uj2_A 33 SGKSSVCAKIVQLLG 47 (252)
T ss_dssp SSHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhh
Confidence 699999999988654
No 215
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=60.31 E-value=5.4 Score=29.31 Aligned_cols=99 Identities=9% Similarity=0.028 Sum_probs=47.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEeeccccccCCCChHHHHHHHHHHHhcCCCCcCchHHHHhhcCCceEEEEEeCCCCc
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLENVREESQRPGGLACLRQKLLSNILKDKNVMPYIDLNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 80 (192)
+|||||.+.+...+...+.+.+.+... +....+..... +..+..-..........+...+...+=+|++|...+.
T Consensus 36 sGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~~~~~~----~v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp~D~ 110 (261)
T 2eyu_A 36 SGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKKS----IVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDL 110 (261)
T ss_dssp CSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSSS----EEEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCCCSH
T ss_pred ccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeecCCcce----eeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCCCCH
Confidence 699999999998665433455555321 10000000000 0000000000011233455555556778999999755
Q ss_pred hhHHHhhccCCCCCCCceEEEEecchh
Q 039644 81 SQLESLMGSLDWLTPVSRIILTTRNKQ 107 (192)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~iivTtR~~~ 107 (192)
.....+.... ..|.-|++||....
T Consensus 111 ~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 111 ETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred HHHHHHHHHH---ccCCEEEEEeCcch
Confidence 4433332221 23555777776644
No 216
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=60.23 E-value=3.4 Score=28.79 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=11.8
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+...+
T Consensus 32 sGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 32 SGKTTLAKNLQKHL 45 (207)
T ss_dssp SSHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHhc
Confidence 59999999998753
No 217
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=60.06 E-value=4.1 Score=26.60 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 12 ~GKSsli~~l~~~ 24 (161)
T 2dyk_A 12 VGKSSLFNRLLKK 24 (161)
T ss_dssp SSHHHHHHHHHHC
T ss_pred CCHHHHHHHHhCC
Confidence 6999999999873
No 218
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=59.90 E-value=3.5 Score=28.69 Aligned_cols=12 Identities=50% Similarity=0.559 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+||||+++.+..
T Consensus 13 sGKST~~~~La~ 24 (206)
T 1jjv_A 13 SGKTTIANLFTD 24 (206)
T ss_dssp SCHHHHHHHHHT
T ss_pred CCHHHHHHHHHH
Confidence 699999999976
No 219
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=59.73 E-value=7.9 Score=28.42 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||+..++..+.
T Consensus 41 sGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 41 AGKSMLALQLAAQIA 55 (279)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 699999999998554
No 220
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=59.73 E-value=3.7 Score=29.85 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+...+.
T Consensus 43 sGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 43 AGKTTIHRIKQKEFQ 57 (253)
T ss_dssp GTTHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcC
Confidence 599999999998764
No 221
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=59.48 E-value=9.6 Score=27.39 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+++.+++.+...
T Consensus 36 sGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 36 AGKTTHLQWFCDRLQER 52 (227)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 59999999999987543
No 222
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=59.33 E-value=4.2 Score=27.91 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||.+.++..
T Consensus 40 ~GKSTLl~~l~~~ 52 (191)
T 1oix_A 40 VGKSNLLSRFTRN 52 (191)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999884
No 223
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=59.28 E-value=4.5 Score=28.25 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+...+
T Consensus 23 SGKSTva~~L~~~l 36 (192)
T 2grj_A 23 TGKSTVCEILKNKY 36 (192)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc
Confidence 69999999998863
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=59.21 E-value=32 Score=27.32 Aligned_cols=95 Identities=11% Similarity=0.000 Sum_probs=54.9
Q ss_pred EEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEe---------cc----h--hHHhhcCCCceEecCCCCHHHHHHHH
Q 039644 70 VLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTT---------RN----K--QVLRNWGVSKIYEMEALEYHHALELF 132 (192)
Q Consensus 70 ~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTt---------R~----~--~~~~~~~~~~~~~l~~l~~~ea~~lf 132 (192)
-++++|+++... ..+.+...+...... .+|+.| .+ . -.....+....+.+++++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 499999998653 466666555543333 344344 11 1 00111123355799999999999999
Q ss_pred HHhhcCCCCCCccHHHHHHHHHHHh-CCCchHHHHH
Q 039644 133 SQHAFKRNHPDVGYEKLSSNVTKYA-QGIPLALKVL 167 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plai~~~ 167 (192)
...+-... ..-..+....+.+.+ .|.|.....+
T Consensus 376 ~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEG--INISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 87652111 112334556677777 7887754433
No 225
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=59.20 E-value=4.2 Score=28.45 Aligned_cols=15 Identities=27% Similarity=0.729 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++.-+.
T Consensus 31 sGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 31 VGKSTVVRCLRERIP 45 (207)
T ss_dssp SSHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHhhCC
Confidence 699999999998653
No 226
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=59.17 E-value=6.5 Score=27.47 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+|||||+..++......
T Consensus 41 ~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 41 SGKTLLIERTIERIGNE 57 (221)
T ss_dssp SCHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHhccC
Confidence 69999999999875443
No 227
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=58.88 E-value=11 Score=27.09 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.9
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+++.+.+.+..
T Consensus 32 ~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 32 SGKTTQSHLLAEYLSE 47 (223)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 6999999999998754
No 228
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=58.83 E-value=4.6 Score=29.19 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+.+++
T Consensus 40 sGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 40 SGKGTQSLNLKKSH 53 (243)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999865
No 229
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=58.71 E-value=4.4 Score=27.86 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||||+..+...+..
T Consensus 17 sGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 17 TGKTTLLKKLIPALCA 32 (174)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 6999999999987543
No 230
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=58.41 E-value=4.5 Score=26.35 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||+..+...
T Consensus 14 ~GKssl~~~l~~~ 26 (166)
T 2ce2_X 14 VGKSALTIQLIQN 26 (166)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999873
No 231
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=58.30 E-value=4.3 Score=30.77 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++.-+.
T Consensus 101 sGKSTL~~~L~gll~ 115 (312)
T 3aez_A 101 VGKSTTARVLQALLA 115 (312)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhcc
Confidence 699999999988654
No 232
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=58.12 E-value=7.5 Score=27.89 Aligned_cols=24 Identities=17% Similarity=-0.027 Sum_probs=16.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFL 24 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv 24 (192)
+||||++..++.+...+-..++.+
T Consensus 23 sGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 23 AGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEE
Confidence 599999999999875543333333
No 233
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=58.02 E-value=4.7 Score=31.06 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||||..++..+.
T Consensus 18 SGKTtla~~La~~l~ 32 (340)
T 3d3q_A 18 SGKTELSIEVAKKFN 32 (340)
T ss_dssp SSHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHcC
Confidence 699999999999753
No 234
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=57.71 E-value=14 Score=26.63 Aligned_cols=25 Identities=8% Similarity=0.205 Sum_probs=17.6
Q ss_pred CchhHHHHHHHHHhhC-CCcceEEEe
Q 039644 1 IGKTAIARAIFDKISG-DFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~-~F~~~~wv~ 25 (192)
+||||+++.+++.+.. .++.+....
T Consensus 38 sGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 38 AGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 6999999999997653 345344443
No 235
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=57.51 E-value=5.2 Score=27.83 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++..++
T Consensus 12 ~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 12 VGKTTLIHKASEVLK 26 (189)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhcc
Confidence 699999999998654
No 236
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=57.27 E-value=17 Score=30.11 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=16.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||+|+.++++.... +.++++-
T Consensus 232 ~GKT~l~~~ia~~~~~--~v~V~~~ 254 (578)
T 3gqb_A 232 SGKSVTQQSLAKWSNA--DVVVYVG 254 (578)
T ss_dssp SCHHHHHHHHHHHSSC--SEEEEEE
T ss_pred ccHHHHHHHHHhccCC--CEEEEEE
Confidence 6999999999887433 3445544
No 237
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=57.17 E-value=6 Score=31.53 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEe
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~ 25 (192)
+||||||..++..+... -..++|++
T Consensus 214 ~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 214 VGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 69999999999975432 23567775
No 238
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=56.99 E-value=3.1 Score=32.09 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||||..+++++.
T Consensus 51 sGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 51 TGKSRLSIDLAAHFP 65 (339)
T ss_dssp SSHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHCC
Confidence 699999999999653
No 239
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=56.81 E-value=8 Score=27.34 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=18.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+.+.-..+..++
T Consensus 14 vGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 14 TGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 6999999999997765433455555
No 240
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=56.79 E-value=4.8 Score=29.46 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.++..+.
T Consensus 59 sGKSTl~~~La~~lg 73 (250)
T 3nwj_A 59 SGKTTVGKIMARSLG 73 (250)
T ss_dssp SCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcC
Confidence 699999999998764
No 241
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=56.69 E-value=4.9 Score=30.70 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||||..++.++
T Consensus 16 sGKTtla~~La~~l 29 (323)
T 3crm_A 16 AGKTDLAMALADAL 29 (323)
T ss_dssp SCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999999875
No 242
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=56.49 E-value=4.9 Score=28.22 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||+..++...
T Consensus 49 vGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 49 SGKTLLIEKLIDNL 62 (226)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999864
No 243
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=56.36 E-value=5 Score=27.60 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||.+.++..
T Consensus 16 ~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 16 VGKSNLLSRFTRN 28 (199)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999884
No 244
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=56.32 E-value=5.1 Score=26.27 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 16 ~GKssl~~~l~~~ 28 (168)
T 1z2a_A 16 VGKSSMIQRYCKG 28 (168)
T ss_dssp SSHHHHHHHHHHC
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 245
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=55.72 E-value=5.2 Score=27.07 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||+..+...
T Consensus 32 ~GKSsli~~l~~~ 44 (190)
T 3con_A 32 VGKSALTIQLIQN 44 (190)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 246
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=55.55 E-value=5.4 Score=26.07 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 15 ~GKssl~~~l~~~ 27 (168)
T 1u8z_A 15 VGKSALTLQFMYD 27 (168)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999873
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=55.46 E-value=5.2 Score=28.32 Aligned_cols=14 Identities=14% Similarity=0.617 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||++.++...
T Consensus 34 sGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 34 VGKGTLIKKLLNEF 47 (218)
T ss_dssp SSHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhhC
Confidence 59999999999865
No 248
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=55.41 E-value=16 Score=29.46 Aligned_cols=25 Identities=4% Similarity=-0.197 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEe
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~ 25 (192)
+|||+||.+++...... =..++|++
T Consensus 253 ~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 253 MVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 59999999999976543 24567776
No 249
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=55.40 E-value=5.2 Score=29.07 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+++.++.++
T Consensus 38 sGKSTl~k~La~~L 51 (252)
T 4e22_A 38 AGKGTLCKALAESL 51 (252)
T ss_dssp SSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhc
Confidence 69999999999765
No 250
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=55.37 E-value=42 Score=27.71 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=19.5
Q ss_pred EEEEEeCCCCc--hhHHHhhccCCCCCCCceEEEE
Q 039644 70 VLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILT 102 (192)
Q Consensus 70 ~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~iivT 102 (192)
-++|+|.+... ..+..+...++ .+.++|+.
T Consensus 281 dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilv 312 (574)
T 3e1s_A 281 DLLIVDEVSMMGDALMLSLLAAVP---PGARVLLV 312 (574)
T ss_dssp SEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEE
T ss_pred CEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEE
Confidence 38999998744 34667766654 45566665
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=55.33 E-value=5.3 Score=27.77 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.+.....
T Consensus 15 aGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 15 AGKSTLLKKLFQEHS 29 (198)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCc
Confidence 599999999988653
No 252
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=55.32 E-value=5.3 Score=28.05 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=10.8
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+||||+++.+..
T Consensus 15 SGKST~~~~L~~ 26 (218)
T 1vht_A 15 SGKSTVANAFAD 26 (218)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 699999999976
No 253
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=55.24 E-value=10 Score=27.40 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=18.1
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+...-..+.-++
T Consensus 12 vGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 12 IGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 6999999999997765433445554
No 254
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=55.09 E-value=5.5 Score=26.07 Aligned_cols=13 Identities=23% Similarity=0.486 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 14 ~GKssli~~l~~~ 26 (167)
T 1c1y_A 14 VGKSALTVQFVQG 26 (167)
T ss_dssp SSHHHHHHHHHHC
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 255
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=54.83 E-value=5.6 Score=25.94 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 14 ~GKSsli~~l~~ 25 (167)
T 1kao_A 14 VGKSALTVQFVT 25 (167)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 699999999987
No 256
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.83 E-value=4.1 Score=27.58 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=30.5
Q ss_pred HHHhhcCCceEEEEEeCCCCchh-------------------HHHhhccCCCC-CCCceEEEEecchhHHhh
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ-------------------LESLMGSLDWL-TPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~-------------------~~~l~~~~~~~-~~~~~iivTtR~~~~~~~ 111 (192)
.+.+.+..++-+++||.-.+.-+ ...+...+... ..|..+|++|.+...+..
T Consensus 93 ~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 93 EMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 45666778899999998753221 13333333321 235668888877655443
No 257
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=54.78 E-value=10 Score=27.21 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||++..++....
T Consensus 25 vGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 25 SGKTTLTGEFGRYLE 39 (262)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998655
No 258
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=54.65 E-value=11 Score=26.67 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEe
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~ 25 (192)
+||||+|..++..+... =..+.-++
T Consensus 16 vGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 16 DGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp SSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred cchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 69999999999987665 33445554
No 259
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=54.29 E-value=5.8 Score=26.34 Aligned_cols=13 Identities=23% Similarity=0.554 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 26 ~GKSsli~~l~~~ 38 (179)
T 1z0f_A 26 VGKSCLLHQFTEK 38 (179)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 260
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=54.27 E-value=5.8 Score=26.11 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 17 ~GKssli~~l~~~ 29 (170)
T 1z08_A 17 VGKTSLVLRYCEN 29 (170)
T ss_dssp SCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 261
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=54.17 E-value=5.5 Score=29.52 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+||||+|+.+..+
T Consensus 13 sGKST~a~~L~~~ 25 (301)
T 1ltq_A 13 SGKSTWAREFIAK 25 (301)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 6999999999884
No 262
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=54.17 E-value=5.8 Score=25.99 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 17 ~GKssli~~l~~ 28 (170)
T 1r2q_A 17 VGKSSLVLRFVK 28 (170)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 699999999987
No 263
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=54.13 E-value=5.4 Score=26.39 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 15 vGKSsl~~~l~~ 26 (175)
T 2nzj_A 15 VGKTSLASLFAG 26 (175)
T ss_dssp SSHHHHHHHHHC
T ss_pred ccHHHHHHHHhc
Confidence 699999999987
No 264
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=54.12 E-value=5.9 Score=25.93 Aligned_cols=13 Identities=31% Similarity=0.184 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 11 ~GKssl~~~l~~~ 23 (164)
T 1r8s_A 11 AGKTTILYKLKLG 23 (164)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 265
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=54.10 E-value=5.7 Score=28.77 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++..+
T Consensus 20 sGKsTla~~la~~l 33 (233)
T 3r20_A 20 TGKSSVSRGLARAL 33 (233)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999876
No 266
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=54.01 E-value=4.2 Score=30.66 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=17.4
Q ss_pred eEecCCCCHHHHHHHHHHhhc
Q 039644 117 IYEMEALEYHHALELFSQHAF 137 (192)
Q Consensus 117 ~~~l~~l~~~ea~~lf~~~~~ 137 (192)
.+.++..+.++-.+++.....
T Consensus 179 ~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 179 KIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp EEECCCCCHHHHHHHHHHHHC
T ss_pred EEEcCCCCHHHHHHHHHhccc
Confidence 588999999999998887654
No 267
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=53.98 E-value=5.2 Score=26.73 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||+|...+...
T Consensus 18 vGKTsli~~l~~~ 30 (178)
T 2iwr_A 18 SGKSSLIHRFLTG 30 (178)
T ss_dssp GCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999873
No 268
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=53.95 E-value=5.9 Score=26.35 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 20 ~GKssli~~l~~~ 32 (181)
T 2fn4_A 20 VGKSALTIQFIQS 32 (181)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999874
No 269
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=53.85 E-value=5.9 Score=25.95 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 14 ~GKssli~~l~~~ 26 (170)
T 1ek0_A 14 VGKSSIVLRFVSN 26 (170)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999873
No 270
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=53.72 E-value=5.1 Score=27.02 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||.+.++..
T Consensus 18 vGKStL~~~l~~~ 30 (188)
T 2wjg_A 18 VGKSTIFNALTGE 30 (188)
T ss_dssp SSHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCC
Confidence 6999999999873
No 271
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=53.63 E-value=3.8 Score=28.04 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHhhCC-C-cceEEEe
Q 039644 1 IGKTAIARAIFDKISGD-F-ECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F-~~~~wv~ 25 (192)
+|||||++.+...+... + .+.+.+.
T Consensus 13 sGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 13 SGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred CCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 49999999999865432 2 2445543
No 272
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=53.56 E-value=6 Score=25.96 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 17 ~GKSsli~~l~~~ 29 (170)
T 1z0j_A 17 VGKSSIMWRFVED 29 (170)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999874
No 273
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=53.51 E-value=6 Score=26.71 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 18 vGKSsli~~l~~~ 30 (184)
T 1m7b_A 18 CGKTALLHVFAKD 30 (184)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999873
No 274
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=53.43 E-value=4.5 Score=27.45 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||.+.++.
T Consensus 13 vGKStLl~~l~~ 24 (184)
T 2zej_A 13 SGKTTLLQQLMK 24 (184)
T ss_dssp SSHHHHHHHHTC
T ss_pred CCHHHHHHHHhc
Confidence 699999999987
No 275
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=53.15 E-value=6.1 Score=30.07 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||||..+++++
T Consensus 21 sGKt~la~~La~~~ 34 (316)
T 3foz_A 21 SGKTALAIELRKIL 34 (316)
T ss_dssp SCHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHhC
Confidence 69999999999864
No 276
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=53.12 E-value=5.4 Score=26.24 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 14 ~GKssli~~l~~ 25 (172)
T 2erx_A 14 VGKSSLVLRFVK 25 (172)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHHc
Confidence 699999999987
No 277
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=53.06 E-value=5.1 Score=28.48 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||||.+++.+.
T Consensus 45 sGKStLA~~La~~g 58 (205)
T 2qmh_A 45 VGKSETALELVQRG 58 (205)
T ss_dssp TTTHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhC
Confidence 69999999999864
No 278
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=52.85 E-value=6.5 Score=31.47 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.6
Q ss_pred eEecCCCCHHHHHHHHH
Q 039644 117 IYEMEALEYHHALELFS 133 (192)
Q Consensus 117 ~~~l~~l~~~ea~~lf~ 133 (192)
.+.+++++.++-..++.
T Consensus 330 ~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 330 RVELTALSAADFERILT 346 (444)
T ss_dssp EEECCCCCHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHH
Confidence 47899999999888884
No 279
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=52.76 E-value=6.8 Score=28.06 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=14.1
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+++.++..+..
T Consensus 37 sGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 37 SGKTTVINEVYHRLVK 52 (229)
T ss_dssp SCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 6999999999998765
No 280
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=52.56 E-value=6.4 Score=30.23 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=14.5
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+++.+++.+...
T Consensus 18 aGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 18 IGKSTTGRVMASAASGG 34 (334)
T ss_dssp SSHHHHHHHHHSGGGCS
T ss_pred CCHHHHHHHHHHHhccC
Confidence 69999999999987654
No 281
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=52.50 E-value=6 Score=26.23 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||.+.+..
T Consensus 14 vGKStL~~~l~~ 25 (165)
T 2wji_A 14 VGKSTIFNALTG 25 (165)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHhC
Confidence 699999999987
No 282
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=52.36 E-value=5.4 Score=28.33 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||+|...+..
T Consensus 24 VGKTsLi~r~~~ 35 (216)
T 4dkx_A 24 VGKTSLITRFMY 35 (216)
T ss_dssp SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHh
Confidence 799999999886
No 283
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=52.10 E-value=6.5 Score=26.72 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 32 vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 32 AGKSALTVKFLTK 44 (187)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CcHHHHHHHHHhC
Confidence 6999999999873
No 284
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=52.01 E-value=6.6 Score=25.76 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 14 ~GKssli~~l~~ 25 (170)
T 1g16_A 14 VGKSCLLVRFVE 25 (170)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 699999999986
No 285
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=52.00 E-value=6.6 Score=26.12 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 19 ~GKSsli~~l~~~ 31 (182)
T 1ky3_A 19 VGKTSLMHRYVND 31 (182)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999873
No 286
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=51.84 E-value=6.6 Score=26.42 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=11.1
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 22 ~GKSsli~~l~~ 33 (195)
T 3bc1_A 22 VGKTSVLYQYTD 33 (195)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 699999999987
No 287
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=51.82 E-value=6.7 Score=25.81 Aligned_cols=12 Identities=33% Similarity=0.274 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 18 ~GKssl~~~l~~ 29 (171)
T 1upt_A 18 AGKTTILYRLQV 29 (171)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 699999999987
No 288
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=51.80 E-value=10 Score=28.55 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||++..++..+...
T Consensus 115 sGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 115 TGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SSHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHhc
Confidence 69999999999976544
No 289
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=51.75 E-value=6.3 Score=29.61 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.+...+.
T Consensus 91 sGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 91 VGKSTTARVLQALLS 105 (308)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh
Confidence 699999999998664
No 290
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=51.61 E-value=6.4 Score=30.07 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||||..++.++
T Consensus 14 sGKt~la~~La~~~ 27 (322)
T 3exa_A 14 VGKTKTSVMLAKRL 27 (322)
T ss_dssp SCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhC
Confidence 69999999999864
No 291
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=51.48 E-value=6.4 Score=29.99 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.+...+.
T Consensus 103 SGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 103 VGKSTTSRVLKALLS 117 (321)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 699999999988654
No 292
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=51.48 E-value=6.8 Score=25.99 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 18 ~GKSsli~~l~~ 29 (177)
T 1wms_A 18 VGKSSLMNRYVT 29 (177)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 699999999987
No 293
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=51.44 E-value=6.8 Score=26.29 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 21 ~GKSsli~~l~~~ 33 (186)
T 2bme_A 21 TGKSCLLHQFIEK 33 (186)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 294
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=51.34 E-value=6.8 Score=26.61 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=11.2
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 31 vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 31 SGKSALVHRYLTG 43 (184)
T ss_dssp SCHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999988873
No 295
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=51.25 E-value=6.9 Score=26.05 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 21 ~GKssli~~l~~~ 33 (180)
T 2g6b_A 21 VGKTCLLVRFKDG 33 (180)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999873
No 296
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=51.25 E-value=6.9 Score=25.93 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 25 ~GKssli~~l~~ 36 (179)
T 2y8e_A 25 VGKTSLITRFMY 36 (179)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 699999999986
No 297
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=51.23 E-value=26 Score=27.72 Aligned_cols=25 Identities=24% Similarity=0.108 Sum_probs=18.4
Q ss_pred CchhHHHHHHHHHhhCC-CcceEEEe
Q 039644 1 IGKTAIARAIFDKISGD-FECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~wv~ 25 (192)
+|||+||..++..+... =..++|++
T Consensus 211 ~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 211 MGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 69999999999975432 23567776
No 298
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=51.23 E-value=6.9 Score=26.16 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 29 ~GKSsli~~l~~ 40 (187)
T 2a9k_A 29 VGKSALTLQFMY 40 (187)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhh
Confidence 699999999987
No 299
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=51.19 E-value=6.6 Score=26.54 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||.+.+.....
T Consensus 25 ~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 25 SGKTTNLKWIYSKVP 39 (198)
T ss_dssp SSHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHhhcc
Confidence 699999977766443
No 300
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=51.14 E-value=6.5 Score=25.85 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=10.5
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 13 ~GKSsli~~l~~ 24 (169)
T 3q85_A 13 VGKSTLAGTFGG 24 (169)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHHh
Confidence 699999999864
No 301
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=51.05 E-value=12 Score=28.13 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=16.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+++.++..++.. .+.+.+.
T Consensus 113 sGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 113 VGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 69999999999865543 3444443
No 302
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=51.01 E-value=5.9 Score=27.99 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=23.4
Q ss_pred hhcCCceEEEEEeCCCCch--hHHHhhccCCCCCCCceEEEEecchhH
Q 039644 63 RRLSRMKVLIVFDDVTCFS--QLESLMGSLDWLTPVSRIILTTRNKQV 108 (192)
Q Consensus 63 ~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~iivTtR~~~~ 108 (192)
+.+-.++-+|+||...+.. .+..+...+ ..|..|| +|.+...
T Consensus 117 raL~~~p~lllLDEPts~~~~~l~~~l~~l---~~g~tii-vtHd~~~ 160 (208)
T 3b85_A 117 RGRTLNDAFVILDEAQNTTPAQMKMFLTRL---GFGSKMV-VTGDITQ 160 (208)
T ss_dssp TTCCBCSEEEEECSGGGCCHHHHHHHHTTB---CTTCEEE-EEEC---
T ss_pred HHHhcCCCEEEEeCCccccHHHHHHHHHHh---cCCCEEE-EECCHHH
Confidence 4445578899999987652 222333333 3356677 7766543
No 303
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=50.93 E-value=6.6 Score=26.10 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 17 ~GKssl~~~l~~ 28 (178)
T 2hxs_A 17 SGKTSLTTCFAQ 28 (178)
T ss_dssp SSHHHHHHHHHG
T ss_pred CCHHHHHHHHHh
Confidence 699999999986
No 304
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=50.83 E-value=7 Score=26.53 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 36 ~GKSsLi~~l~~~ 48 (193)
T 2oil_A 36 VGKTNLLSRFTRN 48 (193)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999873
No 305
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=50.49 E-value=7.2 Score=25.99 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 23 ~GKSsli~~l~~~ 35 (181)
T 2efe_B 23 AGKSSLVLRFVKD 35 (181)
T ss_dssp SCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 306
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=50.44 E-value=12 Score=27.21 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=17.1
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+...-..+.-++
T Consensus 30 vGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 30 VGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6999999999987654422344444
No 307
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=50.36 E-value=12 Score=27.05 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=17.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+...-..+.-++
T Consensus 14 vGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 14 TGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 6999999999997655433445554
No 308
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=50.26 E-value=7.2 Score=26.61 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 39 vGKSsli~~l~~~ 51 (196)
T 2atv_A 39 VGKSALVVRFLTK 51 (196)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999873
No 309
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=50.23 E-value=7.2 Score=26.41 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 59 ~GKSsll~~l~~~ 71 (193)
T 2ged_A 59 SGKTSLLTLLTTD 71 (193)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999874
No 310
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=50.17 E-value=7.3 Score=26.08 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 29 ~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 29 VGKSALTIQFFQK 41 (183)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999874
No 311
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=49.99 E-value=7.4 Score=26.02 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 16 ~GKssl~~~l~~ 27 (186)
T 1mh1_A 16 VGKTCLLISYTT 27 (186)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 699999999987
No 312
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=49.98 E-value=6.5 Score=26.13 Aligned_cols=12 Identities=42% Similarity=0.434 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 19 ~GKssl~~~l~~ 30 (178)
T 2lkc_A 19 HGKTTLLDAIRH 30 (178)
T ss_dssp TTHHHHHHHHHT
T ss_pred CCHHHHHHHHhC
Confidence 699999999987
No 313
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=49.96 E-value=7.3 Score=26.37 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 18 ~GKSsli~~l~~~ 30 (208)
T 3clv_A 18 VGKSSIVLRLTKD 30 (208)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999884
No 314
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=49.95 E-value=7.3 Score=27.01 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 37 vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 37 VGKTCLVRRFTQG 49 (201)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999873
No 315
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=49.86 E-value=7.4 Score=26.54 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 34 vGKSsli~~l~~ 45 (190)
T 1m2o_B 34 AGKTTLLHMLKN 45 (190)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 699999999987
No 316
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=49.71 E-value=7.5 Score=26.06 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 15 ~GKSsli~~l~~~ 27 (189)
T 4dsu_A 15 VGKSALTIQLIQN 27 (189)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhC
Confidence 6999999999873
No 317
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=49.68 E-value=12 Score=26.79 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+..+=..+.-++
T Consensus 14 vGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 14 VGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 6999999999997654422344444
No 318
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=49.64 E-value=7.5 Score=25.90 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=11.2
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 19 ~GKssl~~~~~~~ 31 (182)
T 3bwd_D 19 VGKTCLLISYTSN 31 (182)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999998873
No 319
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=49.52 E-value=3 Score=30.44 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+++.+.
T Consensus 35 sGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 35 AGKSTFVNILKQLCE 49 (263)
T ss_dssp SSHHHHHTTTGGGCT
T ss_pred CCHHHHHHHHHHhcC
Confidence 699999999888763
No 320
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=49.44 E-value=6.6 Score=26.51 Aligned_cols=13 Identities=31% Similarity=0.884 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 34 ~GKSsli~~l~~~ 46 (195)
T 3pqc_A 34 VGKSSLLNALFNR 46 (195)
T ss_dssp SSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999874
No 321
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=49.41 E-value=7.6 Score=26.37 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 34 ~GKSsli~~l~~~ 46 (191)
T 3dz8_A 34 VGKTSFLFRYADD 46 (191)
T ss_dssp SSHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcC
Confidence 6999999999874
No 322
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=49.40 E-value=9.9 Score=26.96 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=18.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+.+.-..+.-++
T Consensus 11 vGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 11 VGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp HHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5999999999997765533444454
No 323
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=49.36 E-value=7.2 Score=27.02 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=15.4
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||++|.+++.. . ..++++.
T Consensus 10 SGKS~~A~~la~~-~---~~~~yia 30 (180)
T 1c9k_A 10 SGKSRHAEALIGD-A---PQVLYIA 30 (180)
T ss_dssp SSHHHHHHHHHCS-C---SSEEEEE
T ss_pred CcHHHHHHHHHhc-C---CCeEEEe
Confidence 6999999999866 1 2356665
No 324
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=49.24 E-value=4.5 Score=30.25 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=11.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+...+.
T Consensus 16 SGKSTva~~L~~~lg 30 (290)
T 1a7j_A 16 AGTSTVKHTFDQIFR 30 (290)
T ss_dssp --CCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 599999999988643
No 325
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=49.23 E-value=11 Score=28.29 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.++..++
T Consensus 111 sGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 111 GGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998654
No 326
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=48.89 E-value=7.9 Score=25.86 Aligned_cols=12 Identities=17% Similarity=0.559 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 17 ~GKSsli~~l~~ 28 (181)
T 3t5g_A 17 VGKSSLTIQFVE 28 (181)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 699999999986
No 327
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=48.76 E-value=15 Score=26.60 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=17.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+. .-..+.-++
T Consensus 39 vGKTT~a~~LA~~la-~g~~VlliD 62 (267)
T 3k9g_A 39 VGKSTSAIILATLLS-KNNKVLLID 62 (267)
T ss_dssp SCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred chHHHHHHHHHHHHH-CCCCEEEEE
Confidence 699999999999776 433445554
No 328
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=48.76 E-value=7.9 Score=26.19 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 33 ~GKSsli~~l~~~ 45 (189)
T 2gf9_A 33 VGKTSFLFRYADD 45 (189)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 329
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=48.74 E-value=7.9 Score=26.23 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 33 ~GKSsli~~l~~ 44 (188)
T 1zd9_A 33 SGKTTFVNVIAS 44 (188)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 699999999987
No 330
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=48.70 E-value=7.9 Score=26.51 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=10.8
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...++.
T Consensus 17 vGKSsL~~~~~~ 28 (192)
T 2cjw_A 17 VGKSTLANIFAG 28 (192)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 699999999985
No 331
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=48.64 E-value=7.9 Score=31.60 Aligned_cols=16 Identities=6% Similarity=0.274 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+|+.++.++..
T Consensus 406 sGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 406 VSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999998764
No 332
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=48.61 E-value=7.9 Score=26.90 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 39 vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 39 CGKTALLHVFAKD 51 (205)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999883
No 333
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=48.60 E-value=13 Score=27.40 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=17.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+...=..+.-++
T Consensus 13 vGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 13 IGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6999999999997654422344444
No 334
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=48.60 E-value=8 Score=26.26 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 32 ~GKSsli~~l~~ 43 (191)
T 2a5j_A 32 VGKSCLLLQFTD 43 (191)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 699999999987
No 335
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=48.56 E-value=7 Score=26.21 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||.+.++..
T Consensus 15 ~GKStLl~~l~~~ 27 (172)
T 2gj8_A 15 AGKSSLLNALAGR 27 (172)
T ss_dssp SSHHHHHHHHHTS
T ss_pred CCHHHHHHHHhCC
Confidence 6999999999873
No 336
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=48.47 E-value=8 Score=26.15 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 31 ~GKSsli~~l~~ 42 (189)
T 1z06_A 31 VGKTCLTYRFCA 42 (189)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 699999999987
No 337
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=48.44 E-value=8 Score=26.30 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 34 ~GKSsli~~l~~~ 46 (192)
T 2fg5_A 34 VGKSSIVCRFVQD 46 (192)
T ss_dssp SSHHHHHHHHHHC
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999873
No 338
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=48.32 E-value=7.1 Score=25.57 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=10.4
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||.+.+..
T Consensus 13 ~GKSsli~~l~~ 24 (166)
T 3q72_A 13 VGKSALARIFGG 24 (166)
T ss_dssp SSHHHHHHHHCC
T ss_pred CCHHHHHHHHcC
Confidence 699999999865
No 339
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=48.29 E-value=15 Score=28.84 Aligned_cols=25 Identities=8% Similarity=0.123 Sum_probs=16.9
Q ss_pred CchhHHHHHHHHHhhC------CCcceEEEe
Q 039644 1 IGKTAIARAIFDKISG------DFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~------~F~~~~wv~ 25 (192)
+|||||+..++-.... .-..++|++
T Consensus 189 sGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 189 TGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp SSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 6999999988753221 224578886
No 340
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=48.24 E-value=8 Score=27.54 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHhhC-CCcceEEE
Q 039644 1 IGKTAIARAIFDKISG-DFECSCFL 24 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~-~F~~~~wv 24 (192)
+|||||.+.++..... .+.+.+.+
T Consensus 27 sGKSTLlk~L~g~~~p~~~~g~v~~ 51 (219)
T 1s96_A 27 AGKSSLIQALLKTQPLYDTQVSVSH 51 (219)
T ss_dssp SCHHHHHHHHHHHSCTTTEEECCCE
T ss_pred CCHHHHHHHHhccCCCCceEEEEEe
Confidence 6999999999987642 34443443
No 341
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=48.21 E-value=6.7 Score=28.60 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=23.2
Q ss_pred eEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhh
Q 039644 69 KVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 69 ~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~ 111 (192)
+.+++||...+.-+ +..+...+. ..|..||++|.+......
T Consensus 152 ~~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tviivtHd~~~~~~ 198 (249)
T 2qi9_C 152 GQLLLLDEPMNSLDVAQQSALDKILSALS--QQGLAIVMSSHDLNHTLR 198 (249)
T ss_dssp CCEEEESSTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHHH
T ss_pred CeEEEEECCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHH
Confidence 44999999875322 222222221 125568888888665543
No 342
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=48.13 E-value=7.6 Score=26.08 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 12 ~GKSsli~~l~~~ 24 (190)
T 2cxx_A 12 VGKSTLIYRLTGK 24 (190)
T ss_dssp SSHHHHHHHHHSC
T ss_pred CCHHHHHHHHhCc
Confidence 6999999999873
No 343
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=48.12 E-value=8.1 Score=26.50 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 35 ~GKSsli~~l~~~ 47 (201)
T 3oes_A 35 VGKTSLAHQFVEG 47 (201)
T ss_dssp SSHHHHHHHHHHS
T ss_pred cCHHHHHHHHHhC
Confidence 6999999999883
No 344
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=48.03 E-value=7.5 Score=28.14 Aligned_cols=52 Identities=17% Similarity=0.077 Sum_probs=29.3
Q ss_pred HHHhhcCCceEEEEEeCCCCchh---HHHhhccCCCC--CCCceEEEEecchhHHhh
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ---LESLMGSLDWL--TPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~~~~~--~~~~~iivTtR~~~~~~~ 111 (192)
.+.+.+-.++-+++||...+.-+ -..+...+... ..|..||++|.+...+..
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~ 192 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 46666677888999999874322 11121111111 124558888887654433
No 345
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=48.03 E-value=7.1 Score=26.46 Aligned_cols=12 Identities=17% Similarity=0.642 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 34 ~GKSsli~~l~~ 45 (195)
T 1svi_A 34 VGKSSFINSLIN 45 (195)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHhC
Confidence 699999999986
No 346
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=47.91 E-value=12 Score=26.11 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+|..++..+.+.
T Consensus 13 vGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 13 VGKTVASCALLQAAKAA 29 (224)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 69999999999876544
No 347
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=47.84 E-value=5.6 Score=30.87 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=14.4
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+||||+++.++..+...|
T Consensus 35 ~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 35 SGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCe
Confidence 599999999999765444
No 348
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=47.81 E-value=8.2 Score=26.71 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...++..
T Consensus 18 ~GKTsli~~l~~~ 30 (214)
T 2fh5_B 18 SGKTLLFVRLLTG 30 (214)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhCC
Confidence 6999999999873
No 349
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=47.69 E-value=8.4 Score=26.18 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 34 ~GKSsl~~~l~~~ 46 (194)
T 3reg_A 34 VGKTCLLLAFSKG 46 (194)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999883
No 350
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=47.53 E-value=8.4 Score=26.05 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 27 ~GKSsli~~l~~~ 39 (196)
T 3tkl_A 27 VGKSCLLLRFADD 39 (196)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 351
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=47.51 E-value=7.4 Score=26.16 Aligned_cols=13 Identities=31% Similarity=0.230 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 32 ~GKSsli~~l~~~ 44 (181)
T 2h17_A 32 AGKTTILYQFSMN 44 (181)
T ss_dssp SSHHHHHHHHHTT
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999863
No 352
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=47.38 E-value=8.5 Score=26.11 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 19 ~GKSsli~~l~~ 30 (199)
T 2gf0_A 19 VGKSSLVLRFVK 30 (199)
T ss_dssp SSHHHHHHHHHH
T ss_pred CcHHHHHHHHHc
Confidence 699999999987
No 353
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=47.21 E-value=13 Score=29.77 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+||||+++.++......|
T Consensus 50 sGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 50 RGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp SSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhccC
Confidence 699999999998764333
No 354
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=47.14 E-value=9.7 Score=26.61 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.+++++.
T Consensus 17 sGk~ti~~~la~~lg 31 (201)
T 3fdi_A 17 SGGHLVAKKLAEHYN 31 (201)
T ss_dssp SSHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhC
Confidence 699999999999864
No 355
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=47.08 E-value=5.7 Score=30.48 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+++.+.+.+...
T Consensus 15 sGKTT~~~~La~~L~~~ 31 (331)
T 1e2k_A 15 MGKTTTTQLLVALGSRD 31 (331)
T ss_dssp SSHHHHHHHHTC----C
T ss_pred CCHHHHHHHHHHHhhhC
Confidence 69999999998876543
No 356
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=47.00 E-value=8.7 Score=26.24 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 25 ~GKSsli~~l~~ 36 (206)
T 2bov_A 25 VGKSALTLQFMY 36 (206)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 699999999987
No 357
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=46.83 E-value=8.7 Score=26.29 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 19 ~GKSsli~~l~~~ 31 (207)
T 1vg8_A 19 VGKTSLMNQYVNK 31 (207)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 358
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=46.79 E-value=6.5 Score=28.07 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=28.6
Q ss_pred HHHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHH
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVL 109 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~ 109 (192)
.+.+.+-.++-+++||...+.-+ +..+...+.. .|..||++|.+...+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~--~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE--GGTSIVMVTHERELA 203 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHH
Confidence 45566677888999999864322 1122222211 255688888876654
No 359
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=46.76 E-value=8.7 Score=26.66 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 23 ~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 23 SGKTSLLTLLTTD 35 (218)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999884
No 360
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=46.76 E-value=14 Score=27.45 Aligned_cols=25 Identities=16% Similarity=0.011 Sum_probs=17.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+.+.=..++-++
T Consensus 52 vGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 52 IGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6999999999997655433445554
No 361
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=46.64 E-value=5 Score=28.54 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=6.8
Q ss_pred CchhHHHHHHH-HHh
Q 039644 1 IGKTAIARAIF-DKI 14 (192)
Q Consensus 1 iGKTtLa~~~~-~~~ 14 (192)
+|||||++.++ ...
T Consensus 38 sGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 38 CGKTTVANKLLEKQK 52 (231)
T ss_dssp ----CHHHHHHC---
T ss_pred CCHHHHHHHHHhcCC
Confidence 59999999999 654
No 362
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=46.64 E-value=8.9 Score=25.87 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 26 ~GKssli~~l~~~ 38 (195)
T 1x3s_A 26 VGKSSLLLRFTDD 38 (195)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6999999999873
No 363
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=46.63 E-value=9.8 Score=32.87 Aligned_cols=18 Identities=39% Similarity=0.634 Sum_probs=15.0
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+|||+||+.++......|
T Consensus 522 tGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 522 CGKTLLAKAIANECQANF 539 (806)
T ss_dssp SSHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHhCCCE
Confidence 699999999999875443
No 364
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=46.32 E-value=8.2 Score=28.58 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=10.7
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+||||+|+.+..
T Consensus 86 SGKSTva~~La~ 97 (281)
T 2f6r_A 86 SGKSSVAQRLKN 97 (281)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 699999999984
No 365
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=46.31 E-value=9 Score=26.21 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 39 ~GKSsli~~l~~ 50 (199)
T 2p5s_A 39 VGKSSFLMRLCK 50 (199)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 699999999986
No 366
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=46.28 E-value=8.3 Score=28.03 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=27.5
Q ss_pred HHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhh
Q 039644 61 NFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~ 111 (192)
+.+.+-.++-+|+||...+.-+ +..+...+. ..|..||++|.+......
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~ 208 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR--GPNFGALVITHYQRILNY 208 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC--STTCEEEEECSSSGGGGT
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hcCCEEEEEecCHHHHHH
Confidence 4444445678999998864321 222222232 235668888887655443
No 367
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=46.22 E-value=7.1 Score=29.44 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||+||+.+++...
T Consensus 56 tGKT~la~~la~~~~ 70 (350)
T 1g8p_A 56 TGKSTAVRALAALLP 70 (350)
T ss_dssp GCTTHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHhCc
Confidence 599999999999654
No 368
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=46.22 E-value=9.1 Score=25.95 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||+|...+...
T Consensus 29 ~GKssli~~l~~~ 41 (194)
T 2atx_A 29 VGKTCLLMSYAND 41 (194)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999874
No 369
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=46.10 E-value=8.3 Score=28.37 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=29.0
Q ss_pred HHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhh
Q 039644 61 NFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~ 111 (192)
+.+.+-.++-+|+||...+.-+ +..+...+. ..|..||++|.+......
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~--~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR--DGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC--CSSCEEEEECSSGGGGGT
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeeCHHHHHh
Confidence 4444456788999999875322 222223332 236678888887665443
No 370
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=45.89 E-value=7.5 Score=30.40 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+++.+.+.+...
T Consensus 60 sGKTT~~~~Lae~L~~~ 76 (376)
T 1of1_A 60 MGKTTTTQLLVALGSRD 76 (376)
T ss_dssp SSHHHHHHHHHC----C
T ss_pred CCHHHHHHHHHHHhhhC
Confidence 69999999998876543
No 371
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=45.79 E-value=9.3 Score=26.38 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 36 ~GKSsli~~l~~ 47 (207)
T 2fv8_A 36 CGKTCLLIVFSK 47 (207)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 699999999987
No 372
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=45.73 E-value=8.1 Score=26.44 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 19 ~GKSsli~~l~~~ 31 (203)
T 1zbd_A 19 VGKTSFLFRYADD 31 (203)
T ss_dssp SSHHHHHHHHHTC
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999873
No 373
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=45.64 E-value=6.9 Score=28.17 Aligned_cols=50 Identities=22% Similarity=0.168 Sum_probs=28.6
Q ss_pred HHHhhcCCceEEEEEeCCCCchh---HHHhhccCCCC--CCCceEEEEecchhHH
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ---LESLMGSLDWL--TPVSRIILTTRNKQVL 109 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~~~~~--~~~~~iivTtR~~~~~ 109 (192)
.+.+.+-.++=+|+||...+.-+ -..+...+... ..|..||++|.+...+
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 209 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA 209 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH
Confidence 35556667888999999875322 12222111111 1255688888887654
No 374
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=45.61 E-value=15 Score=27.41 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.1
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||++..++..+...
T Consensus 109 ~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 109 SGKTTTAAKLALYYKGK 125 (295)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 69999999999976543
No 375
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=45.16 E-value=9.6 Score=26.22 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 40 vGKSsli~~l~~ 51 (201)
T 2hup_A 40 VGKTCVVQRFKT 51 (201)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhh
Confidence 699999999986
No 376
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=45.13 E-value=4.8 Score=28.72 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+||||+++.++..
T Consensus 31 sGKSTl~~~L~~~ 43 (230)
T 2vp4_A 31 SGKTTYLNHFEKY 43 (230)
T ss_dssp SCHHHHHHTTGGG
T ss_pred CCHHHHHHHHHhc
Confidence 6999999998875
No 377
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=45.04 E-value=10 Score=28.38 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=13.2
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||++..++..+.
T Consensus 116 sGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 116 AGKTTTLAKLAAISM 130 (296)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998765
No 378
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=44.98 E-value=8.5 Score=25.51 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=10.8
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 20 ~GKssl~~~l~~ 31 (181)
T 3tw8_B 20 VGKSSLLLRFAD 31 (181)
T ss_dssp SCHHHHHHHHCS
T ss_pred CCHHHHHHHHhc
Confidence 699999999876
No 379
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=44.89 E-value=15 Score=27.77 Aligned_cols=24 Identities=13% Similarity=-0.125 Sum_probs=16.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEE
Q 039644 1 IGKTAIARAIFDKISGDFECSCFL 24 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv 24 (192)
+||||++..++..+...-..+.++
T Consensus 116 ~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 116 TGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEE
Confidence 699999999998765442233444
No 380
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=44.88 E-value=9.2 Score=25.78 Aligned_cols=12 Identities=33% Similarity=0.227 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 27 ~GKssl~~~l~~ 38 (187)
T 1zj6_A 27 AGKTTILYQFSM 38 (187)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHhc
Confidence 699999999985
No 381
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=44.85 E-value=80 Score=22.34 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=11.9
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
.|||.+|..++...
T Consensus 119 ~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 119 SGKTHVAMAAINEL 132 (237)
T ss_dssp TTHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHc
Confidence 59999999888765
No 382
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=44.60 E-value=15 Score=27.54 Aligned_cols=25 Identities=16% Similarity=-0.077 Sum_probs=17.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||++..++..+...-..+.++.
T Consensus 109 ~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 109 TGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6999999999987654423344443
No 383
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=44.57 E-value=14 Score=28.54 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+++.++..++
T Consensus 168 sGKTTll~~Lag~l~ 182 (359)
T 2og2_A 168 GGKTTSLGKLAHRLK 182 (359)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhcc
Confidence 699999999998654
No 384
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=44.57 E-value=11 Score=26.92 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+++.++..+
T Consensus 27 sGKst~~~~l~~~l 40 (236)
T 1q3t_A 27 SGKSTVAKIIAKDF 40 (236)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc
Confidence 69999999998865
No 385
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=44.53 E-value=10 Score=26.08 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 19 ~GKSsli~~l~~ 30 (206)
T 2bcg_Y 19 VGKSCLLLRFSD 30 (206)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 699999999987
No 386
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=44.45 E-value=10 Score=26.05 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 36 ~GKSsli~~l~~ 47 (201)
T 2gco_A 36 CGKTCLLIVFSK 47 (201)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 699999999987
No 387
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=44.40 E-value=8.3 Score=29.66 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||++.++..+.
T Consensus 181 sGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 181 SGKSVLVNKLAAVFN 195 (365)
T ss_dssp SHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhC
Confidence 599999999998654
No 388
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=44.31 E-value=16 Score=26.90 Aligned_cols=25 Identities=8% Similarity=0.023 Sum_probs=17.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+...-..+.-++
T Consensus 48 vGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 48 VGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEe
Confidence 6999999999986654322344443
No 389
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=44.27 E-value=9.5 Score=26.20 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=10.8
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 36 ~GKSsLi~~l~~ 47 (200)
T 2o52_A 36 TGKSCLLHQFIE 47 (200)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHHh
Confidence 699999999976
No 390
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=44.11 E-value=16 Score=26.83 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=17.6
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+...-..+.-++
T Consensus 16 vGKTT~a~nLA~~La~~G~~VlliD 40 (286)
T 2xj4_A 16 AGKSTIAVHLVTALLYGGAKVAVID 40 (286)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6999999999997654423344444
No 391
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=43.93 E-value=9.2 Score=29.36 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=18.0
Q ss_pred CchhHHHHHHHHHhhCC--C---cc-eEEEee
Q 039644 1 IGKTAIARAIFDKISGD--F---EC-SCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~--F---~~-~~wv~~ 26 (192)
+|||||+..++..+... . .+ ++|++.
T Consensus 142 sGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 142 SGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 69999999999875321 1 23 488873
No 392
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=43.91 E-value=10 Score=27.11 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||++|..+++.+..
T Consensus 69 tGKTt~a~ala~~l~g 84 (212)
T 1tue_A 69 TGKSYFGMSFIHFIQG 84 (212)
T ss_dssp GCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHhCC
Confidence 5999999999997643
No 393
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=43.90 E-value=7.6 Score=27.98 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=28.8
Q ss_pred HHhhcCCceEEEEEeCCCCchh---HHHhhccCC---CCCCCceEEEEecchhHHh
Q 039644 61 NFRRLSRMKVLIVFDDVTCFSQ---LESLMGSLD---WLTPVSRIILTTRNKQVLR 110 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~~~---~~~~~~~iivTtR~~~~~~ 110 (192)
+.+.+-.++-+++||...+.-+ -..+...+. ....|..||++|.+.....
T Consensus 138 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 4445556788999999975422 223333231 2223666888887765543
No 394
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=43.79 E-value=9.7 Score=26.81 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=10.6
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...++.
T Consensus 48 vGKSSLl~r~~~ 59 (211)
T 2g3y_A 48 VGKSTLANIFAG 59 (211)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHHh
Confidence 699999999874
No 395
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=43.77 E-value=15 Score=27.96 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+++.++..++.
T Consensus 140 aGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 140 SGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6999999999986543
No 396
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=43.73 E-value=10 Score=26.41 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 38 vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 38 CGKTAMLQVLAKD 50 (214)
T ss_dssp SSHHHHHHHHHHS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999873
No 397
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=43.72 E-value=7.7 Score=28.47 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=28.4
Q ss_pred HHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhh
Q 039644 61 NFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~ 111 (192)
+.+.+-.++-+|+||...+.-+ +..+...+.. .|..||++|.+...+..
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~--~g~tvi~vtHd~~~~~~ 218 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARH 218 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--TTCCEEEECSCHHHHHH
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHH
Confidence 4455556788999999875322 2222222211 25568888888665544
No 398
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=43.72 E-value=7.8 Score=27.54 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=25.4
Q ss_pred HHHhhcCCceEEEEEeCCCCch------hHHHhhccCCCCCCCceEEEEecchh
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFS------QLESLMGSLDWLTPVSRIILTTRNKQ 107 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~~~~iivTtR~~~ 107 (192)
.+.+.+-.++-+++||...+.- .+..+...+. ..|..||++|.+..
T Consensus 143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~--~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL--KEKGIVIISSREEL 194 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--HHHSEEEEEESSCC
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHH
Confidence 3555666778899999886431 1222222221 12445777777644
No 399
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=43.60 E-value=10 Score=26.10 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 20 ~GKTsli~~l~~ 31 (212)
T 2j0v_A 20 VGKTCMLICYTS 31 (212)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 699999999987
No 400
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=43.59 E-value=11 Score=29.85 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||||..++.++
T Consensus 13 sGKttla~~La~~~ 26 (409)
T 3eph_A 13 VGKSQLSIQLAQKF 26 (409)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHC
Confidence 69999999999864
No 401
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=43.50 E-value=10 Score=25.61 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=11.7
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||+..++.-+
T Consensus 37 sGKStll~ai~~~l 50 (182)
T 3kta_A 37 SGKSNIGDAILFVL 50 (182)
T ss_dssp SSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH
Confidence 59999999988743
No 402
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=43.49 E-value=8.3 Score=30.39 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.++.+.
T Consensus 269 SGKSTla~~L~~~~ 282 (416)
T 3zvl_A 269 AGKSTFIQEHLVSA 282 (416)
T ss_dssp SSHHHHHHHHTGGG
T ss_pred CCHHHHHHHHHHhc
Confidence 69999999998865
No 403
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=43.41 E-value=7.4 Score=26.17 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 29 ~GKssl~~~l~~~ 41 (186)
T 1ksh_A 29 AGKTTILKKFNGE 41 (186)
T ss_dssp SSHHHHHHHHTTC
T ss_pred CCHHHHHHHHhcC
Confidence 6999999999863
No 404
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=43.31 E-value=11 Score=25.97 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...++.
T Consensus 31 ~GKSsli~~l~~ 42 (213)
T 3cph_A 31 VGKSCLLVRFVE 42 (213)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 699999999987
No 405
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.31 E-value=7.9 Score=27.95 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=28.7
Q ss_pred HHHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHh
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLR 110 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~ 110 (192)
.+.+.+-.++-+++||...+.-+ +..+...+.. .|..||++|.+.....
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~--~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGAL 203 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHH
Confidence 45666677888999999875322 1122222211 3555888888765443
No 406
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=43.30 E-value=16 Score=29.81 Aligned_cols=18 Identities=22% Similarity=0.076 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+||||+|+.++..+.-.|
T Consensus 46 SGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 46 RGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp SSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhhcC
Confidence 599999999998764333
No 407
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=43.17 E-value=19 Score=25.83 Aligned_cols=20 Identities=15% Similarity=-0.029 Sum_probs=12.6
Q ss_pred HHHHhhcCCceEEEEEeCCC
Q 039644 59 DLNFRRLSRMKVLIVFDDVT 78 (192)
Q Consensus 59 ~~l~~~l~~~~~LlVlDdv~ 78 (192)
..+...+.++...+.+|.+.
T Consensus 92 ~di~~~i~~~~dvV~IDEaQ 111 (219)
T 3e2i_A 92 SEIMTHDLTNVDVIGIDEVQ 111 (219)
T ss_dssp GGGGGSCCTTCSEEEECCGG
T ss_pred HHHHHHHhcCCCEEEEechh
Confidence 33444455566688888885
No 408
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=43.16 E-value=9.9 Score=27.96 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=26.8
Q ss_pred HHhhcCCceEEEEEeCCCCchh---HHHhhccCCCCCCCceEEEEecchhHHh
Q 039644 61 NFRRLSRMKVLIVFDDVTCFSQ---LESLMGSLDWLTPVSRIILTTRNKQVLR 110 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~iivTtR~~~~~~ 110 (192)
+.+.+-.++-+++||...+.-+ -..+...+..... .||++|.+.....
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~ 189 (263)
T 2pjz_A 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLN 189 (263)
T ss_dssp HHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGG
T ss_pred HHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHH
Confidence 4555566788999999875422 1222222211112 5888888765543
No 409
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=42.77 E-value=8.1 Score=28.21 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=27.3
Q ss_pred HHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHh
Q 039644 61 NFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLR 110 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~ 110 (192)
+.+.+-.++-+|+||...+.-+ +..+...+. ..|..||++|.+...+.
T Consensus 164 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 164 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK--AKGITFLIIEHRLDIVL 217 (257)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCCSTTG
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHH
Confidence 4455556788999999875322 222222221 12556888887755443
No 410
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=42.70 E-value=11 Score=26.30 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+++.+...+
T Consensus 14 sGkst~~~~l~~~~ 27 (219)
T 2h92_A 14 AGKSTIAKRVASEL 27 (219)
T ss_dssp SSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhc
Confidence 69999999998865
No 411
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=42.48 E-value=9.8 Score=25.62 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=11.1
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 27 vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 27 AGKTTLLKQLASE 39 (181)
T ss_dssp SSHHHHHHHHCCS
T ss_pred CCHHHHHHHHhcC
Confidence 6999999998763
No 412
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=42.33 E-value=8.3 Score=28.37 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=30.2
Q ss_pred HHHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhh
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~ 111 (192)
.+.+.+-.++-+|+||...+.-+ +..+...+. ..|..||++|.+...+..
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~~~ 224 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA--NEGMTMVVVTHEMGFARE 224 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHHH
Confidence 35666677888999999875422 222222221 125668888888665544
No 413
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=42.33 E-value=8.3 Score=28.60 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=29.7
Q ss_pred HHHHhhcCCceEEEEEeCCCCchh---HHHhhccCCCC--CCCceEEEEecchhHHhh
Q 039644 59 DLNFRRLSRMKVLIVFDDVTCFSQ---LESLMGSLDWL--TPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 59 ~~l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~~~~~--~~~~~iivTtR~~~~~~~ 111 (192)
-.+.+.+-.++-+|+||...+.-+ -..+...+... ..|..||++|.+...+..
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~ 209 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPL 209 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGG
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHH
Confidence 345666677899999999875322 11221111111 125568888877555443
No 414
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=42.29 E-value=8.4 Score=27.58 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=33.6
Q ss_pred HHHhhcCCceEEEEEeCCCCchh---HHHhhcc-CCCCCCCceEEEEecchhHHhhcCCCceEec
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ---LESLMGS-LDWLTPVSRIILTTRNKQVLRNWGVSKIYEM 120 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~-~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l 120 (192)
.+.+.+-.++-+++||...+.-+ -..+... +.....+..||++|.+...... ..+++.+
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l 202 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK--ADKILIL 202 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH--CSEEEEE
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh--CCEEEEE
Confidence 34555566788999999975422 2333332 2222235678888887665543 3344444
No 415
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=42.20 E-value=12 Score=26.28 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||+|.|+.+++++
T Consensus 11 sGKgTqa~~La~~~ 24 (206)
T 3sr0_A 11 AGKGTQAKRLAKEK 24 (206)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999875
No 416
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=42.18 E-value=8.4 Score=28.38 Aligned_cols=43 Identities=9% Similarity=0.021 Sum_probs=24.5
Q ss_pred ceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhh
Q 039644 68 MKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 68 ~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~ 111 (192)
++-+|+||...+.-+ +..+...+.. ..+..||++|.+...+..
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~-~~~~tvi~vtHdl~~~~~ 213 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAAL 213 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHH-HSSEEEEEECSCHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEEcCHHHHHH
Confidence 788999999864321 2222211211 234468888887665544
No 417
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=42.14 E-value=17 Score=30.09 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=14.6
Q ss_pred CchhHHHHHHHHHhhCCC
Q 039644 1 IGKTAIARAIFDKISGDF 18 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F 18 (192)
+||||||+.++.......
T Consensus 71 tGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 71 TGKSMLGQAMAELLPTET 88 (604)
T ss_dssp SSHHHHHHHHHHTSCCSS
T ss_pred CCHHHHHHHHhccCCccc
Confidence 699999999999765443
No 418
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=42.03 E-value=9.4 Score=26.07 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=10.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||+|.+.+.++
T Consensus 31 vGKTsLi~~l~~~ 43 (196)
T 3llu_A 31 SGKSSIQKVVFHK 43 (196)
T ss_dssp SSHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhc
Confidence 6999999876663
No 419
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=42.02 E-value=18 Score=27.28 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+|..++..+.+.
T Consensus 25 vGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 25 VGKTTISAATALWMARS 41 (324)
T ss_dssp SSHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHC
Confidence 69999999998865544
No 420
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=41.98 E-value=8.5 Score=27.95 Aligned_cols=55 Identities=16% Similarity=0.281 Sum_probs=31.4
Q ss_pred HHHhhcCCceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEec
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM 120 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l 120 (192)
.+.+.+-.++-+|+||...+.-+ ++.+. .+. .|..||++|.+...... ..+++.|
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~-~~~---~g~tviivtH~~~~~~~--~d~v~~l 216 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMH-KIC---KGRTVIIIAHRLSTVKN--ADRIIVM 216 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHH-HHH---TTSEEEEECSSGGGGTT--SSEEEEE
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHc---CCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 35555566788999999975322 22222 221 25568888877665432 3444444
No 421
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=41.94 E-value=12 Score=26.95 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=17.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+...-..++-++
T Consensus 18 vGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 18 VGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCCEEEEE
Confidence 5999999999997654433444454
No 422
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=41.91 E-value=8 Score=26.55 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=10.3
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 34 vGKSsLi~~l~~ 45 (195)
T 3cbq_A 34 VGKSTLAGTFGG 45 (195)
T ss_dssp SSHHHHHHHTCC
T ss_pred CCHHHHHHHHHh
Confidence 699999999864
No 423
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=41.82 E-value=12 Score=25.85 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 41 ~GKSsLi~~l~~ 52 (204)
T 4gzl_A 41 VGKTCLLISYTT 52 (204)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 699999999987
No 424
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=41.81 E-value=11 Score=27.70 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||.+.++..
T Consensus 13 aGKSTLln~L~g~ 25 (270)
T 3sop_A 13 LGKSTLVNTLFKS 25 (270)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCC
Confidence 6999999999984
No 425
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=41.80 E-value=12 Score=26.03 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=11.7
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+||||||.++..+
T Consensus 27 aGKStlal~L~~r 39 (181)
T 3tqf_A 27 IGKSELSLALIDR 39 (181)
T ss_dssp SSHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHc
Confidence 5999999999985
No 426
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=41.73 E-value=13 Score=26.42 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+||||+++.+++.+..
T Consensus 16 ~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 16 TGKTTQCNILYKKLQP 31 (216)
T ss_dssp SSHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHhcc
Confidence 6999999999998765
No 427
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=41.68 E-value=11 Score=25.69 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=10.8
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 31 ~GKssl~~~l~~ 42 (201)
T 2q3h_A 31 VGKTSLVVSYTT 42 (201)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHHh
Confidence 699999999986
No 428
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=41.67 E-value=8.7 Score=28.13 Aligned_cols=49 Identities=18% Similarity=0.086 Sum_probs=29.9
Q ss_pred HHHhhcCCceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhh
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~ 111 (192)
.+.+.+-.++-+++||...+.-+ ++.+. .+. ..|..||++|.+......
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~-~l~--~~g~tiiivtHd~~~~~~ 211 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILK-QAS--QEGLTILVSSHNMLEVEF 211 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHH-HHH--HTTCEEEEEECCHHHHTT
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHH-HHH--hCCCEEEEEcCCHHHHHH
Confidence 45566677888999999875322 22222 221 135668888887665544
No 429
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=41.58 E-value=8.7 Score=27.75 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHhhcCCceEEEEEeCCCCch------h-HHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEec
Q 039644 61 NFRRLSRMKVLIVFDDVTCFS------Q-LESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM 120 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~------~-~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l 120 (192)
+.+.+-.++-+++||...+.- . ++.+.. +. .|..||++|.+...... ..+++.|
T Consensus 150 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~-~~---~~~tvi~vtH~~~~~~~--~d~v~~l 210 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDS-LM---KGRTTLVIAHRLSTIVD--ADKIYFI 210 (243)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH-HH---TTSEEEEECCSHHHHHH--CSEEEEE
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH-hc---CCCEEEEEeCChHHHHh--CCEEEEE
Confidence 444445577799999886431 2 333332 22 25568888887665543 3344444
No 430
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=41.47 E-value=10 Score=26.02 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=10.7
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 36 vGKSsLi~~l~~ 47 (198)
T 1f6b_A 36 AGKTTLLHMLKD 47 (198)
T ss_dssp SSHHHHHHHHSC
T ss_pred CCHHHHHHHHhc
Confidence 699999999875
No 431
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=41.07 E-value=11 Score=25.62 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 28 ~GKSsl~~~l~~ 39 (199)
T 4bas_A 28 SGKTTIINQVKP 39 (199)
T ss_dssp SCHHHHHHHHSC
T ss_pred CCHHHHHHHHhc
Confidence 699999999887
No 432
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=40.99 E-value=8.9 Score=28.45 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=15.1
Q ss_pred HHHhhcCCceEEEEEeCCCCc
Q 039644 60 LNFRRLSRMKVLIVFDDVTCF 80 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~ 80 (192)
.+.+.+-.++-+|+||...+.
T Consensus 171 ~lAraL~~~p~lLlLDEPts~ 191 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPAAG 191 (279)
T ss_dssp HHHHHHHTCCSEEEEESTTTT
T ss_pred HHHHHHhCCCCEEEEeCCccc
Confidence 345555667889999998753
No 433
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=40.88 E-value=12 Score=26.14 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 24 vGKSsli~~l~~ 35 (223)
T 3cpj_B 24 VGKSNLLSRFTK 35 (223)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 699999999987
No 434
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=40.78 E-value=11 Score=26.11 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=10.9
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 45 vGKSsli~~l~~ 56 (214)
T 2j1l_A 45 CGKTSLLMVFAD 56 (214)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHHc
Confidence 699999999986
No 435
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=40.77 E-value=11 Score=25.67 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=10.8
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 37 ~GKSsLi~~l~~ 48 (192)
T 2il1_A 37 VGKTSLMERFTD 48 (192)
T ss_dssp SSHHHHHHHHCC
T ss_pred CCHHHHHHHHhc
Confidence 699999999876
No 436
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=40.76 E-value=11 Score=26.00 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=10.8
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 36 ~GKSsLi~~l~~ 47 (217)
T 2f7s_A 36 VGKTTFLYRYTD 47 (217)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHhc
Confidence 699999999886
No 437
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=40.74 E-value=9.1 Score=28.12 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=29.2
Q ss_pred HHHhhcCCceEEEEEeCCCCchh---HHHhhccCCCC-CCCceEEEEecchhHHhh
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ---LESLMGSLDWL-TPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~~~~~-~~~~~iivTtR~~~~~~~ 111 (192)
.+.+.+-.++-+++||...+.-+ -..+...+... ..|..||++|.+......
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~ 203 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVIN 203 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGG
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 35566667888999999975422 11221111111 125568888887655443
No 438
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=40.16 E-value=18 Score=29.45 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=17.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||||++.++..++.. .+.+++.
T Consensus 304 SGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 304 VGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp SSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred ccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 69999999999876533 3455554
No 439
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=39.96 E-value=9.5 Score=27.92 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=29.9
Q ss_pred HHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEec
Q 039644 61 NFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM 120 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l 120 (192)
+.+.+-.++-+++||...+.-+ +..+...+. .+..||++|.+...... ..+++.|
T Consensus 166 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~---~~~tviivtH~~~~~~~--~d~i~~l 226 (260)
T 2ghi_A 166 IARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR---KNRTLIIIAHRLSTISS--AESIILL 226 (260)
T ss_dssp HHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT---TTSEEEEECSSGGGSTT--CSEEEEE
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc---CCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 4444455778999999875322 222222222 24568888877655432 3444444
No 440
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=39.47 E-value=14 Score=26.60 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||||+|+.+++++
T Consensus 19 sGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 19 AGKGTQANFIKEKF 32 (230)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 69999999999876
No 441
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=39.44 E-value=17 Score=28.01 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=18.2
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+...-..++-++
T Consensus 155 vGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 155 VGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp SSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6999999999997655433455555
No 442
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=39.39 E-value=12 Score=29.00 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=31.2
Q ss_pred HHHHhhcCCceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 59 DLNFRRLSRMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 59 ~~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
-.+.+.|-.++-+|+||.--+.-+ ++.+..... ..|..+|++|.+...+...
T Consensus 147 ValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~--~~g~tvi~vTHd~~ea~~~ 205 (359)
T 3fvq_A 147 AALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR--ANGKSAVFVSHDREEALQY 205 (359)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHH
Confidence 346666778899999999875322 122222111 2356688888876655543
No 443
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=39.26 E-value=12 Score=25.54 Aligned_cols=12 Identities=33% Similarity=0.229 Sum_probs=10.6
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 40 vGKSsLi~~l~~ 51 (192)
T 2b6h_A 40 AGKTTILYKLKL 51 (192)
T ss_dssp SSHHHHHHHHCS
T ss_pred CCHHHHHHHHHh
Confidence 699999999865
No 444
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=39.13 E-value=9.5 Score=25.45 Aligned_cols=12 Identities=33% Similarity=0.249 Sum_probs=10.4
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 29 ~GKssli~~l~~ 40 (183)
T 1moz_A 29 AGKTTILYRLQI 40 (183)
T ss_dssp SSHHHHHHHTCC
T ss_pred CCHHHHHHHHhc
Confidence 699999988874
No 445
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=38.79 E-value=13 Score=27.91 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=10.5
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||.+.++.
T Consensus 29 ~GKSTLl~~L~g 40 (301)
T 2qnr_A 29 LGKSTLINSLFL 40 (301)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHhC
Confidence 699999999765
No 446
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=38.78 E-value=15 Score=26.11 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+||+|.|+.+++++
T Consensus 40 sGKgTqa~~L~~~~ 53 (217)
T 3umf_A 40 SGKGTQCEKLVQKF 53 (217)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999875
No 447
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=38.75 E-value=22 Score=24.67 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=15.9
Q ss_pred CchhHHHHHHHHHhh-CCCcceEE
Q 039644 1 IGKTAIARAIFDKIS-GDFECSCF 23 (192)
Q Consensus 1 iGKTtLa~~~~~~~~-~~F~~~~w 23 (192)
.||||.+..++.+.. ..+...++
T Consensus 19 sGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 19 SGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcHHHHHHHHHHHHHHCCCEEEEE
Confidence 599999999998764 33444443
No 448
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=38.67 E-value=10 Score=27.63 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=29.4
Q ss_pred HHHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhh
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~ 111 (192)
.+.+.+-.++-+++||...+.-+ +..+...+.. ..|..||++|.+......
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~~ 194 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ-SQNMTVVFTTHQPNQVVA 194 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH-TSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHH
Confidence 34555566788999999875322 2222222211 225668888888665543
No 449
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=38.13 E-value=13 Score=28.76 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=30.4
Q ss_pred HHHhhcCCceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
.+.+.+-.++-+|+||.-.+.-+ ++.+.. +.. ..|..+|++|.+...+...
T Consensus 155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~-l~~-~~g~tvi~vTHd~~~a~~~ 212 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VHD-EMGVTSVFVTHDQEEALEV 212 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHH-HHH-HHTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH-HHH-hcCCEEEEECCCHHHHHHh
Confidence 46667778899999999865322 222221 111 1245688888886655443
No 450
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=38.03 E-value=10 Score=26.74 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...++..
T Consensus 40 vGKSsLin~l~~~ 52 (228)
T 2qu8_A 40 VGKSSFMNIVSRA 52 (228)
T ss_dssp SSHHHHHHHHTTT
T ss_pred CCHHHHHHHHhCC
Confidence 6999999999873
No 451
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=37.97 E-value=17 Score=28.08 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=29.1
Q ss_pred chHHHHhhcCCceEEEEEeCCCCchhHHHhhccCCCCCCCceEEEEecchh
Q 039644 57 YIDLNFRRLSRMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQ 107 (192)
Q Consensus 57 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~iivTtR~~~ 107 (192)
....++..+...+-+|++|.+.+...+....... ..|.-|+.|+....
T Consensus 198 ~~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 198 FADALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp SHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HHHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 4455666777777799999998665544433322 23445666665443
No 452
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=37.96 E-value=7.3 Score=26.10 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=0.7
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 19 ~GKssl~~~l~~ 30 (183)
T 2fu5_C 19 VGKTCVLFRFSE 30 (183)
T ss_dssp C-----------
T ss_pred CCHHHHHHHHHh
Confidence 699999999876
No 453
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=37.95 E-value=22 Score=28.28 Aligned_cols=17 Identities=24% Similarity=0.079 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||++..++..++..
T Consensus 108 sGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 108 SGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 69999999999865443
No 454
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=37.54 E-value=35 Score=26.40 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=27.8
Q ss_pred EEEEEeCCCCchh---HHHhhccCCCCCCCceEEEEecchhHHhhcCCCceEec
Q 039644 70 VLIVFDDVTCFSQ---LESLMGSLDWLTPVSRIILTTRNKQVLRNWGVSKIYEM 120 (192)
Q Consensus 70 ~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l 120 (192)
-+|+||+..+.-+ ...+...+.....|..||++|.+..++.. ..+.+.|
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 7999999985422 22222222221236678888888776643 3444444
No 455
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=37.17 E-value=15 Score=26.22 Aligned_cols=15 Identities=7% Similarity=0.361 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+++++.
T Consensus 25 sGk~~i~~~la~~lg 39 (223)
T 3hdt_A 25 SGGRIVGKKLAEELG 39 (223)
T ss_dssp SCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcC
Confidence 699999999999763
No 456
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=36.97 E-value=13 Score=28.64 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=13.8
Q ss_pred CchhHHH-HHHHHHhhCC
Q 039644 1 IGKTAIA-RAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa-~~~~~~~~~~ 17 (192)
+||||++ +.+.+.+...
T Consensus 23 aGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 23 IGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp SCTTHHHHHHHHTTTTSG
T ss_pred CCHHHHHHHHHHHHHhhC
Confidence 6999999 9998876544
No 457
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=36.95 E-value=30 Score=26.34 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+|..++..+.+.
T Consensus 27 vGKTt~a~~lA~~la~~ 43 (334)
T 3iqw_A 27 VGKTTTSCSLAIQLAKV 43 (334)
T ss_dssp SSHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 69999999999865544
No 458
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=36.53 E-value=15 Score=26.58 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||+|...+..
T Consensus 39 vGKSsLi~~l~~ 50 (255)
T 3c5h_A 39 IGKSCLCNRFVR 50 (255)
T ss_dssp CSHHHHHHHHHC
T ss_pred cCHHHHHHHHHh
Confidence 699999999986
No 459
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=36.42 E-value=79 Score=19.80 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=35.5
Q ss_pred CCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCC--HHHHHHHHHHHH
Q 039644 141 HPDVGYEKLSSNVTKYAQGIPLALKVLSCFLHKRE--KEVWESAIDKLQ 187 (192)
Q Consensus 141 ~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~--~~~w~~~l~~l~ 187 (192)
-|.+..-..+-+-|++...+|+|+.++=+.=.... .+.|..++++++
T Consensus 42 VP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 42 VPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 90 (109)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Confidence 46777777788889999999999999987643322 445888888775
No 460
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=36.42 E-value=15 Score=28.19 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.6
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||||.+.++.....
T Consensus 82 aGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 82 VGKSTLLGMICNGASA 97 (347)
T ss_dssp SSHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHhcCCCC
Confidence 6999999999997653
No 461
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=36.41 E-value=15 Score=29.49 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||++.++.-.
T Consensus 149 sGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 149 TGKTSLSRTLCSYA 162 (460)
T ss_dssp SSHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCcc
Confidence 69999999999843
No 462
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=36.39 E-value=14 Score=26.85 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 14 ~GKTTL~n~l~g~ 26 (271)
T 3k53_A 14 VGKTTIFNALTGL 26 (271)
T ss_dssp SSHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCC
Confidence 6999999999873
No 463
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=36.37 E-value=14 Score=28.59 Aligned_cols=52 Identities=10% Similarity=0.039 Sum_probs=29.9
Q ss_pred HHHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
.+.+.+-.++-+|+||.-.+.-+ +..+...+.. ..|..+|++|.+...+...
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~~ 200 (362)
T 2it1_A 143 AIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK-ELGITTVYVTHDQAEALAM 200 (362)
T ss_dssp HHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHh
Confidence 46667778899999999864321 1111111111 1245688888876655443
No 464
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=36.32 E-value=11 Score=25.43 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=11.2
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 32 ~GKSsli~~l~~~ 44 (190)
T 2h57_A 32 SGKTTIINKLKPS 44 (190)
T ss_dssp SSHHHHHHHTSCG
T ss_pred CCHHHHHHHHhcC
Confidence 6999999998774
No 465
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=36.31 E-value=14 Score=28.68 Aligned_cols=51 Identities=14% Similarity=0.033 Sum_probs=29.3
Q ss_pred HHHhhcCCceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
.+.+.|-.++-+|+||.-.+.-+ ++.+. .+.. ..|..+|++|.+...+...
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~-~l~~-~~g~tvi~vTHd~~~a~~~ 206 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELK-KLQR-QLGVTTIYVTHDQVEAMTM 206 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHH-HHHH-HHTCEEEEEESCHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHH-HHHH-hcCCEEEEECCCHHHHHHh
Confidence 35566667888999999864321 22222 1111 1245688888876655443
No 466
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=36.17 E-value=16 Score=27.63 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=11.9
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||++.+..-+
T Consensus 137 sGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 137 TGKSMLCNSLIHFL 150 (305)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhhc
Confidence 59999999998754
No 467
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=36.06 E-value=15 Score=29.28 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=12.9
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||++..++....
T Consensus 110 vGKTTla~~La~~l~ 124 (432)
T 2v3c_C 110 SGKTTTAAKLARYIQ 124 (432)
T ss_dssp SSTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998654
No 468
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=36.00 E-value=15 Score=28.55 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHh
Q 039644 1 IGKTAIARAIFDKI 14 (192)
Q Consensus 1 iGKTtLa~~~~~~~ 14 (192)
+|||||++.++...
T Consensus 180 sGKSTl~~~l~~~~ 193 (377)
T 1svm_A 180 SGKTTLAAALLELC 193 (377)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhc
Confidence 59999999999854
No 469
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=35.96 E-value=15 Score=28.49 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=30.2
Q ss_pred HHHhhcCCceEEEEEeCCCCchh-------HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
.+.+.+-.++-+|+||.-.+.-+ ++.+. .+.. ..|..+|++|.+...+...
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~-~l~~-~~g~tvi~vTHd~~~~~~~ 200 (359)
T 2yyz_A 143 ALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIK-HLQQ-ELGITSVYVTHDQAEAMTM 200 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH-HHHH-HHCCEEEEEESCHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH-HHHH-hcCCEEEEEcCCHHHHHHh
Confidence 46667778889999999865322 22222 1111 1245688888886655443
No 470
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=35.96 E-value=26 Score=26.75 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+|..++..+...
T Consensus 37 vGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 37 VGKTTMSAATGVYLAEK 53 (349)
T ss_dssp TTHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHC
Confidence 69999999998865433
No 471
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=35.81 E-value=11 Score=31.04 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.9
Q ss_pred CchhHHHHHHHHHhhC
Q 039644 1 IGKTAIARAIFDKISG 16 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~ 16 (192)
+|||||++.++..+..
T Consensus 380 SGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 380 AGKSTLARALAARLME 395 (552)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHhhcc
Confidence 4999999999998764
No 472
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=35.66 E-value=16 Score=30.59 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.2
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+.+++.
T Consensus 63 SGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 63 AGKTTVSMALEEYLV 77 (630)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999999863
No 473
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=35.60 E-value=15 Score=28.60 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=31.1
Q ss_pred hHHHHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhhc
Q 039644 58 IDLNFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 58 ~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~~ 112 (192)
.-.+.+.+-.++-+|+||.-.+.-+ +..+...+.. ..|..+|++|.+...+...
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~~ 208 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ-KLKVTTIYVTHDQVEAMTM 208 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh
Confidence 3346677778899999999865322 1111111111 1245688888886655443
No 474
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=35.60 E-value=15 Score=28.73 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=28.1
Q ss_pred HHhhcCCceEEEEEeCCCCchh---HHHhhccCCCC--CCCceEEEEecchhHHhhc
Q 039644 61 NFRRLSRMKVLIVFDDVTCFSQ---LESLMGSLDWL--TPVSRIILTTRNKQVLRNW 112 (192)
Q Consensus 61 l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~~~~~--~~~~~iivTtR~~~~~~~~ 112 (192)
+.+.|-.++-+|+||.--+.-+ -..+...+... ..|..+|++|.+...+..+
T Consensus 144 iArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~ 200 (381)
T 3rlf_A 144 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL 200 (381)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHH
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh
Confidence 4555556788999999865322 11111111111 1255688888776655443
No 475
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=35.58 E-value=15 Score=27.73 Aligned_cols=13 Identities=38% Similarity=0.692 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||.+.+...
T Consensus 15 aGKTTll~~l~~~ 27 (318)
T 1nij_A 15 AGKTTLLRHILNE 27 (318)
T ss_dssp SSCHHHHHHHHHS
T ss_pred CCHHHHHHHHHhh
Confidence 5999999999874
No 476
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=35.33 E-value=12 Score=25.23 Aligned_cols=12 Identities=33% Similarity=0.326 Sum_probs=10.3
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 33 ~GKssli~~l~~ 44 (189)
T 2x77_A 33 AGKTSILYRLHL 44 (189)
T ss_dssp SSHHHHHHHTCC
T ss_pred CCHHHHHHHHHc
Confidence 699999998864
No 477
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=35.30 E-value=15 Score=26.80 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 16 vGKTsL~n~l~g 27 (258)
T 3a1s_A 16 VGKTSLFNALTG 27 (258)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHHC
Confidence 699999999987
No 478
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=35.14 E-value=31 Score=27.32 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||++..++..+...
T Consensus 109 sGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 109 SGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 69999999999876544
No 479
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=34.87 E-value=17 Score=25.72 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=10.4
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+||||+++.+..
T Consensus 20 sGKStv~~~l~~ 31 (210)
T 4i1u_A 20 SGKTTVADLFAA 31 (210)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 699999998866
No 480
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=34.79 E-value=17 Score=30.02 Aligned_cols=15 Identities=47% Similarity=0.556 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+..++.
T Consensus 407 SGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 407 SGKDAIARALQVTLN 421 (573)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 699999999999865
No 481
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=34.54 E-value=34 Score=25.80 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.0
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||+|..++..+.+.
T Consensus 30 vGKTTva~~LA~~lA~~ 46 (329)
T 2woo_A 30 VGKTTTSCSLAIQMSKV 46 (329)
T ss_dssp SSHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHHC
Confidence 69999999999876544
No 482
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=34.48 E-value=35 Score=26.03 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=12.7
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+|||||+..++..+.
T Consensus 90 ~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 90 VGKSTAIEALGMHLI 104 (355)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999988653
No 483
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=34.20 E-value=29 Score=25.39 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+.+.-..++-++
T Consensus 94 ~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 94 AGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 5999999999997665434455555
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=34.09 E-value=32 Score=27.89 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=16.8
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+|||||++.++......=..++++.
T Consensus 292 sGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 292 TGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6999999999986543322235554
No 485
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=34.02 E-value=17 Score=25.80 Aligned_cols=12 Identities=33% Similarity=0.565 Sum_probs=11.0
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 40 ~GKStlin~l~g 51 (239)
T 3lxx_A 40 AGKSATGNSILG 51 (239)
T ss_dssp SSHHHHHHHHHT
T ss_pred CCHHHHHHHHcC
Confidence 699999999987
No 486
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=33.97 E-value=17 Score=27.18 Aligned_cols=13 Identities=15% Similarity=0.588 Sum_probs=11.5
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 19 vGKSTLln~L~g~ 31 (301)
T 1ega_A 19 VGKSTLLNKLLGQ 31 (301)
T ss_dssp SSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHCC
Confidence 6999999999873
No 487
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=33.95 E-value=13 Score=27.68 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=30.1
Q ss_pred HHHhhcCCceEEEEEeCCCCchh---HHHhhcc-CCCCCCCceEEEEecchhHHh
Q 039644 60 LNFRRLSRMKVLIVFDDVTCFSQ---LESLMGS-LDWLTPVSRIILTTRNKQVLR 110 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~~~---~~~l~~~-~~~~~~~~~iivTtR~~~~~~ 110 (192)
.+.+.+-.++-+++||...+.-+ -..+... +.....+..||++|.+.....
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~ 223 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 34555556788999999975422 2333322 122223567888888766554
No 488
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=33.63 E-value=16 Score=28.20 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=17.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEee
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLEN 26 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~~ 26 (192)
+|||||++.++..+... .+.+.+.+
T Consensus 186 sGKSTll~~l~~~~~~~-~g~I~ie~ 210 (361)
T 2gza_A 186 SGKTTLMKALMQEIPFD-QRLITIED 210 (361)
T ss_dssp SCHHHHHHHHHTTSCTT-SCEEEEES
T ss_pred CCHHHHHHHHHhcCCCC-ceEEEECC
Confidence 59999999999865432 45566653
No 489
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=33.44 E-value=24 Score=33.39 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=19.7
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||.+++......=..++|++
T Consensus 394 sGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 394 SGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6999999999987654445678886
No 490
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=33.39 E-value=37 Score=25.13 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+.+.-..++-++
T Consensus 104 ~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 104 IGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 5999999999998766544555665
No 491
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=33.11 E-value=18 Score=26.66 Aligned_cols=12 Identities=33% Similarity=0.365 Sum_probs=11.1
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||...+..
T Consensus 14 vGKSTL~n~L~g 25 (272)
T 3b1v_A 14 SGKTSLFNLITG 25 (272)
T ss_dssp SSHHHHHHHHHC
T ss_pred CCHHHHHHHHHC
Confidence 699999999987
No 492
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=33.00 E-value=30 Score=27.48 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.1
Q ss_pred CchhHHHHHHHHHhhCC
Q 039644 1 IGKTAIARAIFDKISGD 17 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~ 17 (192)
+||||++..++..+...
T Consensus 111 vGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 111 AGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 69999999999876543
No 493
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=32.97 E-value=17 Score=28.42 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=25.1
Q ss_pred HHHhhcCCceEEEEEeCCCCc------hhHHHhhccCCCCCCCceEEEEecchhHH
Q 039644 60 LNFRRLSRMKVLIVFDDVTCF------SQLESLMGSLDWLTPVSRIILTTRNKQVL 109 (192)
Q Consensus 60 ~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~~~~iivTtR~~~~~ 109 (192)
.+.+.+-.++-+|+||.-.+. ..+......+ ..+..+|++|.+....
T Consensus 165 alARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~---~~~~tvi~vtHd~e~~ 217 (390)
T 3gd7_A 165 CLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA---FADCTVILCEARIEAM 217 (390)
T ss_dssp HHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT---TTTSCEEEECSSSGGG
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH---hCCCEEEEEEcCHHHH
Confidence 345555567888999977422 1122222222 2345577777665443
No 494
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=32.87 E-value=28 Score=33.49 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=19.9
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||||.+++......-..++|++
T Consensus 394 sGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 394 SGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 6999999999997665444678886
No 495
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=32.80 E-value=30 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=17.0
Q ss_pred CchhHHHHHHHHHhhCC-CcceEE
Q 039644 1 IGKTAIARAIFDKISGD-FECSCF 23 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~-F~~~~w 23 (192)
+|||+++..++..++++ +....|
T Consensus 33 vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 33 AGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcHHHHHHHHHHHHHhCCCceEEE
Confidence 69999999999976554 344444
No 496
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=32.80 E-value=9.2 Score=26.10 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHH
Q 039644 1 IGKTAIARAIFDK 13 (192)
Q Consensus 1 iGKTtLa~~~~~~ 13 (192)
+|||||...+...
T Consensus 31 ~GKssli~~l~~~ 43 (208)
T 2yc2_C 31 VGKSALISMFTSK 43 (208)
T ss_dssp -------------
T ss_pred CCHHHHHHHHHhC
Confidence 6999999988764
No 497
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=32.68 E-value=18 Score=28.13 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=32.2
Q ss_pred hHHHHhhcCCceEEEEEeCCCCchh------HHHhhccCCCCCCCceEEEEecchhHHhh
Q 039644 58 IDLNFRRLSRMKVLIVFDDVTCFSQ------LESLMGSLDWLTPVSRIILTTRNKQVLRN 111 (192)
Q Consensus 58 ~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~iivTtR~~~~~~~ 111 (192)
.-.+.+.|-.++-+|++|...+.-+ +-.+...+.. ..|..||++|.+...+..
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~-~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR-RLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HSCCEEEEEESCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHH
Confidence 3346677778899999999875321 1122211211 235678888888776654
No 498
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=32.67 E-value=8.8 Score=26.42 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=10.4
Q ss_pred CchhHHHHHHHH
Q 039644 1 IGKTAIARAIFD 12 (192)
Q Consensus 1 iGKTtLa~~~~~ 12 (192)
+|||||.+.++.
T Consensus 37 ~GKSTLl~~l~g 48 (210)
T 1pui_A 37 AGKSSALNTLTN 48 (210)
T ss_dssp SSHHHHHTTTCC
T ss_pred CCHHHHHHHHhC
Confidence 699999998865
No 499
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=32.56 E-value=32 Score=25.62 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=18.0
Q ss_pred CchhHHHHHHHHHhhCCCcceEEEe
Q 039644 1 IGKTAIARAIFDKISGDFECSCFLE 25 (192)
Q Consensus 1 iGKTtLa~~~~~~~~~~F~~~~wv~ 25 (192)
+||||+|..++..+.+.-..++-|+
T Consensus 116 ~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 116 SGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CChHHHHHHHHHHHHhCCCcEEEEE
Confidence 5999999999997655433455554
No 500
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=32.34 E-value=27 Score=28.65 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHhh
Q 039644 1 IGKTAIARAIFDKIS 15 (192)
Q Consensus 1 iGKTtLa~~~~~~~~ 15 (192)
+||||+|+.+..++.
T Consensus 383 sGKSTia~~La~~L~ 397 (546)
T 2gks_A 383 AGKSTIAEILATMLQ 397 (546)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhh
Confidence 699999999998764
Done!