BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039645
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 59 LQTVEIKIKMDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPDKVLERVRHRT 118
L T+E ++M C+ C V+KS++G+ GV VEV + ++ ++ P + ++ + T
Sbjct: 18 LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVH-LEDQMVLVHTTLPSQEVQALLEGT 76
Query: 119 GKKA 122
G++A
Sbjct: 77 GRQA 80
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 59 LQTVEIKIK-MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPDKVLE 112
L+T ++++ MDC C+ +++ S+E +KGV + V +LTV DP +V E
Sbjct: 7 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT--YDPKQVSE 59
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 59 LQTVEIKIK-MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPDKVLE 112
L+T ++++ MDC C+ +++ S+E +KGV + V +LTV DP +V E
Sbjct: 2 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT--YDPKQVSE 54
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Zn(Ii)-Form
Length = 73
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 68 MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPDKVLERVRHRTG 119
MDC C R+V+ +V + GV QV+V KL V D +E + G
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAG 63
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 66 IKMDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPDKVLERVRHRTGKKA 122
I M CE C +K ++ + G+ + D +Q ++V V P ++ +R+ GK A
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRN-CGKDA 68
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 59 LQTVEIKIK-MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPDKVLE 112
L+T ++++ M C C +++++E +KGV + V +LTV DP +V E
Sbjct: 2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVT--YDPKQVSE 54
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 68 MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPDKVLERVRHRTGKKAEFW 125
M C C V K+++ + GV +VEV ++ + V G DP +++ V G KAE
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEE-GYKAEVL 65
>pdb|4DOK|A Chain A, Crystal Structure Of Arabidopsis Thaliana
Chalcone-Isomerase Like Protein At5g05270 (Atchil)
pdb|4DOK|B Chain B, Crystal Structure Of Arabidopsis Thaliana
Chalcone-Isomerase Like Protein At5g05270 (Atchil)
Length = 208
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 85 KGVTQVEVDPKQSKLTVIG-YVDPDKV---LERVRHRTGKK 121
+G+T +E+ Q K T IG Y+DP V L+ + +TGK+
Sbjct: 27 QGITDIEIHFLQVKFTAIGVYLDPSDVKTHLDNWKGKTGKE 67
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 68 MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPDKV 110
+ C C + +++V+ ++GVT+ V+ SK+TV G +V
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQV 54
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 60 QTVEIKIK-MDCEGCERRVKKSVEGMKGVTQVEV 92
QTV + + M C C VKK++ ++GV++V+V
Sbjct: 3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDV 36
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 68 MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDP---------DKVLERVRHRT 118
M C C R++K ++ M GVT V+ + VI DP +K+ + H
Sbjct: 15 MTCAACAARIEKGLKRMPGVTDANVNLATETVNVI--YDPAETGTAAIQEKIEKLGYHVV 72
Query: 119 GKKAEF 124
+KAEF
Sbjct: 73 TEKAEF 78
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 61 TVEIKI-KMDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPDKV 110
T+++ + MDC C V K+V+ V+VD K+T+ + +++
Sbjct: 1 TIQLTVPTMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQL 51
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 68 MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVI 102
M C C R++K ++ M GVT V+ + VI
Sbjct: 15 MTCAACAARIEKGLKRMPGVTDANVNLATETVNVI 49
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 68 MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDP---------DKVLERVRHRT 118
M C C R++K ++ M GVT V+ VI DP +K+ + H
Sbjct: 15 MTCAACAARIEKGLKRMPGVTDANVNLATETSNVI--YDPAETGTAAIQEKIEKLGYHVV 72
Query: 119 GKKAEF 124
+KAEF
Sbjct: 73 TEKAEF 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,871,358
Number of Sequences: 62578
Number of extensions: 159930
Number of successful extensions: 422
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 25
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)