BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039646
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 67.0 bits (162), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 32/47 (68%)
Query: 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTL 147
+CAVCL E + + R LP C H FH C+D WL S+STCPLCR T+
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 85 LPMFYYKDIVGLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCR 144
LP + + E C VC+C+F LR+LP C+H FH C+D WL +N TCP+CR
Sbjct: 9 LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
Query: 145 G 145
Sbjct: 68 A 68
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 54.3 bits (129), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCR 144
C +CL E +++R LP C H FH C+D WL++N CP+CR
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 48.1 bits (113), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 82 IDALP-MFYYKDIVGLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTC 140
IDALP + +D + + C +C E+ + D LP C H FH C+ WL + TC
Sbjct: 22 IDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTC 80
Query: 141 PLCR 144
P+CR
Sbjct: 81 PVCR 84
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNSLENP 157
+C VC +++ +++R LP C+H FH +CI WL + +CP+CR +L + N+ NP
Sbjct: 16 LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL-TGQNTATNP 71
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLC 143
CAVCL +F D L + P C HAFH C+ WL CPLC
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCR 144
C C E + D + + C+H+FH C+ W+ N+ CPLC+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNSLEN 156
C +CL + N + C HAF CI W+ N TCPLC+ + S +++E+
Sbjct: 8 CPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIES 59
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNSL 154
L+ C +C F E L +C+H+F CI+ W+ CP+CR + S SL
Sbjct: 50 LENELQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSL 104
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNSL 154
L+ C +C F E L +C+H+F CI+ W+ CP+CR + S SL
Sbjct: 61 LENELQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSL 115
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNSL 154
L+ C +C F E L +C+H+F CI+ W+ CP+CR + S SL
Sbjct: 50 LENELQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSL 104
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 36.2 bits (82), Expect = 0.022, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 121 CSHAFHITCIDTWLLSNSTCPL 142
C+HAFH CI WL + CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 36.2 bits (82), Expect = 0.024, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 121 CSHAFHITCIDTWLLSNSTCPL 142
C+HAFH CI WL + CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 36.2 bits (82), Expect = 0.025, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 121 CSHAFHITCIDTWLLSNSTCPL 142
C+HAFH CI WL + CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 35.8 bits (81), Expect = 0.029, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 121 CSHAFHITCIDTWLLSNSTCPL 142
C+HAFH CI WL + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 121 CSHAFHITCIDTWLLSNSTCPL 142
C+HAFH CI WL + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 35.0 bits (79), Expect = 0.050, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 121 CSHAFHITCIDTWLLSNSTCPL 142
C+HAFH CI WL + CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 121 CSHAFHITCIDTWLLSNSTCPL 142
C+HAFH CI WL + CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 104 VCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNS 153
C+C D L+ C+H+F CID W + CP+CR ++ ++ S
Sbjct: 18 CCICMDGRAD---LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 32.7 bits (73), Expect = 0.28, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 91 KDIVGLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN-STCPLCRGTLSS 149
+ + + E F C +C + + RL P CS +CI WL + CP CR L
Sbjct: 14 QSVESIAEVFRCFICXEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70
Query: 150 SDNSLENPVSSFDVSREIST----GFTTDEEN 177
+ L N + +V++++ T T EEN
Sbjct: 71 RE--LVNCRWAEEVTQQLDTLQLCSLTKHEEN 100
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD----NSLENP 157
C +C F + ++P CSH + CI +L + CP C T++ D L+
Sbjct: 25 CGIC---FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDEL 81
Query: 158 VSSFDVSR 165
V S + +R
Sbjct: 82 VKSLNFAR 89
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 102 CAVCLCEF----SEHDNLRLLPSCSHAFHITCIDTWLLSNST-----CPLCR 144
C VC C + D + C AFHI C+D L S + CP CR
Sbjct: 188 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 239
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 102 CAVCLCEF----SEHDNLRLLPSCSHAFHITCIDTWLLSNST-----CPLCR 144
C VC C + D + C AFHI C+D L S + CP CR
Sbjct: 172 CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223
>pdb|3VI3|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 454
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 129 CIDTWLLSNSTCPLCRGTLSSSDNSLENPVSSFDVSREISTGFTTDEENGFSGRHKPENV 188
C D L CP + +ENP S D+ + + T+ G + + KPE++
Sbjct: 44 CDDLEALKKKGCP---------PDDIENPRGSKDIKKNKNV---TNRSKGTAEKLKPEDI 91
Query: 189 HESAAPKRVFSVRLGK 204
H+ + V +R G+
Sbjct: 92 HQIQPQQLVLRLRSGE 107
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 119 PSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNSLENPVSSFDVSRE 166
P C + H +D W + P +S+ D + NP S V+RE
Sbjct: 246 PDCPTSLHQLMLDCWQKDRNARPRFPQVVSALDKMIRNPASLKIVARE 293
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 119 PSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNSLENPVSSFDVSRE 166
P C + H +D W + P +S+ D + NP S V+RE
Sbjct: 244 PDCPTSLHQLMLDCWQKDRNARPRFPQVVSALDKMIRNPASLKIVARE 291
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 102 CAVCLCEFSE-HDNLRLLPS--CSHAFHITCIDTWLLSNSTCPLCR 144
C +C+ +SE N RL+ S C H F C+ L + +TCP CR
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 121 CSHAFHITCIDTWLLSNSTCPLC 143
C H+F TCI +L ++ CP+C
Sbjct: 30 CLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 28.1 bits (61), Expect = 7.2, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 121 CSHAFHITCIDTWLLSNSTCPLC 143
C H+F TCI +L ++ CP+C
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 100 FDCAVCLCEFSE-HDNLRLLPS--CSHAFHITCIDTWLLSNSTCPLCR 144
C +C+ +SE N RL+ S C H F C+ L + +TCP CR
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 100 FDCAVCLCEFSE-HDNLRLLPS--CSHAFHITCIDTWLLSNSTCPLCR 144
C +C+ +SE N RL+ S C H F C+ L + +TCP CR
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 102 CAVCLCEFSE-HDNLRLLPS--CSHAFHITCIDTWLLSNSTCPLCRGTLS 148
C +C+ +SE N RL+ S C H F C+ L + +TCP CR ++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,258,954
Number of Sequences: 62578
Number of extensions: 310464
Number of successful extensions: 552
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 47
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)