Query 039646
Match_columns 325
No_of_seqs 384 out of 1948
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 11:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 2.2E-17 4.8E-22 159.2 9.0 76 75-151 205-281 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 2.6E-14 5.6E-19 98.8 2.4 43 101-144 2-44 (44)
3 PHA02929 N1R/p28-like protein; 99.4 2.2E-12 4.7E-17 119.6 10.1 75 74-148 147-227 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.2 8.5E-12 1.8E-16 95.7 4.0 45 99-144 19-73 (73)
5 COG5243 HRD1 HRD ubiquitin lig 99.2 8.4E-11 1.8E-15 113.4 11.3 67 79-148 269-345 (491)
6 COG5540 RING-finger-containing 99.2 8.4E-12 1.8E-16 117.5 3.5 52 97-149 321-373 (374)
7 KOG0317 Predicted E3 ubiquitin 98.9 1.3E-09 2.7E-14 102.5 5.5 50 98-151 238-287 (293)
8 PF13920 zf-C3HC4_3: Zinc fing 98.9 9.3E-10 2E-14 78.0 3.4 46 99-148 2-48 (50)
9 PLN03208 E3 ubiquitin-protein 98.9 9.2E-10 2E-14 98.8 4.0 52 96-151 15-82 (193)
10 cd00162 RING RING-finger (Real 98.9 1.3E-09 2.8E-14 73.5 3.4 44 101-147 1-45 (45)
11 KOG0823 Predicted E3 ubiquitin 98.9 1.4E-09 2.9E-14 99.5 3.4 52 97-152 45-99 (230)
12 KOG0802 E3 ubiquitin ligase [P 98.8 2.8E-09 6.1E-14 109.9 4.6 54 97-151 289-344 (543)
13 PF12861 zf-Apc11: Anaphase-pr 98.8 3E-09 6.5E-14 83.5 3.6 52 97-148 19-82 (85)
14 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.1E-09 6.7E-14 71.5 3.1 39 102-143 1-39 (39)
15 PHA02926 zinc finger-like prot 98.7 3.3E-09 7.2E-14 96.6 2.1 53 96-148 167-230 (242)
16 smart00504 Ubox Modified RING 98.7 2.2E-08 4.7E-13 73.5 4.2 47 100-150 2-48 (63)
17 KOG0320 Predicted E3 ubiquitin 98.6 1.2E-08 2.6E-13 90.0 2.4 52 98-151 130-181 (187)
18 PF15227 zf-C3HC4_4: zinc fing 98.6 2.2E-08 4.7E-13 68.8 3.2 38 102-143 1-42 (42)
19 PF14634 zf-RING_5: zinc-RING 98.6 2.1E-08 4.6E-13 69.3 3.0 44 101-145 1-44 (44)
20 PF00097 zf-C3HC4: Zinc finger 98.6 2.9E-08 6.3E-13 67.1 2.5 39 102-143 1-41 (41)
21 TIGR00599 rad18 DNA repair pro 98.6 3.9E-08 8.5E-13 97.4 3.9 55 94-152 21-75 (397)
22 smart00184 RING Ring finger. E 98.6 5E-08 1.1E-12 63.3 3.0 38 102-143 1-39 (39)
23 COG5194 APC11 Component of SCF 98.4 1.5E-07 3.2E-12 72.7 2.6 29 120-148 53-81 (88)
24 KOG0828 Predicted E3 ubiquitin 98.4 3.2E-07 6.9E-12 91.6 5.4 51 98-149 570-635 (636)
25 COG5219 Uncharacterized conser 98.3 7.7E-08 1.7E-12 101.7 -1.1 72 77-148 1447-1523(1525)
26 COG5574 PEX10 RING-finger-cont 98.3 2.7E-07 5.8E-12 86.0 2.4 50 98-151 214-265 (271)
27 KOG1493 Anaphase-promoting com 98.3 1.7E-07 3.7E-12 71.8 -0.0 50 99-148 20-81 (84)
28 KOG0287 Postreplication repair 98.2 1.9E-07 4.1E-12 89.6 -0.1 53 96-152 20-72 (442)
29 smart00744 RINGv The RING-vari 98.2 1.4E-06 3.1E-11 61.8 2.8 42 101-144 1-49 (49)
30 PF04564 U-box: U-box domain; 98.1 1.1E-06 2.4E-11 67.3 2.1 50 98-151 3-53 (73)
31 KOG2164 Predicted E3 ubiquitin 98.1 1.2E-06 2.6E-11 88.2 2.8 51 99-153 186-241 (513)
32 KOG1734 Predicted RING-contain 98.1 6.6E-07 1.4E-11 83.6 0.2 54 97-151 222-284 (328)
33 COG5432 RAD18 RING-finger-cont 98.1 1.3E-06 2.8E-11 82.5 1.7 51 95-149 21-71 (391)
34 PF13445 zf-RING_UBOX: RING-ty 98.0 3.1E-06 6.7E-11 58.5 2.7 34 102-137 1-35 (43)
35 PF11793 FANCL_C: FANCL C-term 98.0 1.5E-06 3.2E-11 66.2 -0.2 51 99-149 2-67 (70)
36 KOG0311 Predicted E3 ubiquitin 98.0 7.5E-07 1.6E-11 86.0 -2.2 64 95-161 39-103 (381)
37 TIGR00570 cdk7 CDK-activating 97.9 6.5E-06 1.4E-10 79.1 3.8 52 99-151 3-57 (309)
38 KOG2177 Predicted E3 ubiquitin 97.9 3.4E-06 7.4E-11 76.9 1.6 46 96-145 10-55 (386)
39 KOG4265 Predicted E3 ubiquitin 97.9 6.4E-06 1.4E-10 79.8 3.2 47 99-149 290-337 (349)
40 KOG2930 SCF ubiquitin ligase, 97.8 1.2E-05 2.6E-10 65.2 2.1 28 120-147 80-107 (114)
41 KOG0804 Cytoplasmic Zn-finger 97.8 1E-05 2.3E-10 80.3 2.1 50 96-148 172-222 (493)
42 KOG0827 Predicted E3 ubiquitin 97.7 1.4E-05 3.1E-10 78.0 1.9 46 100-145 5-53 (465)
43 KOG0825 PHD Zn-finger protein 97.5 1.6E-05 3.5E-10 83.3 -0.5 49 100-149 124-172 (1134)
44 KOG4445 Uncharacterized conser 97.5 3.4E-05 7.3E-10 73.3 1.3 56 98-154 114-192 (368)
45 KOG1039 Predicted E3 ubiquitin 97.4 6.5E-05 1.4E-09 73.4 2.1 53 97-149 159-222 (344)
46 PF14835 zf-RING_6: zf-RING of 97.4 4.1E-05 8.9E-10 57.2 0.5 48 100-152 8-55 (65)
47 KOG4159 Predicted E3 ubiquitin 97.4 8.9E-05 1.9E-09 73.9 2.3 51 95-149 80-130 (398)
48 KOG1785 Tyrosine kinase negati 97.3 0.00013 2.7E-09 71.9 2.9 48 101-152 371-420 (563)
49 KOG0824 Predicted E3 ubiquitin 97.3 9.8E-05 2.1E-09 70.3 2.0 48 99-150 7-55 (324)
50 KOG4172 Predicted E3 ubiquitin 97.2 7.6E-05 1.6E-09 53.9 0.2 45 100-148 8-54 (62)
51 KOG1645 RING-finger-containing 97.1 0.0003 6.6E-09 69.4 3.3 48 99-147 4-55 (463)
52 KOG0978 E3 ubiquitin ligase in 97.1 0.00015 3.3E-09 76.2 0.9 52 96-151 640-692 (698)
53 KOG3970 Predicted E3 ubiquitin 96.9 0.00082 1.8E-08 61.8 3.6 55 97-153 48-110 (299)
54 PF11789 zf-Nse: Zinc-finger o 96.9 0.001 2.2E-08 48.7 3.3 42 98-142 10-53 (57)
55 KOG0297 TNF receptor-associate 96.9 0.00054 1.2E-08 68.4 2.3 53 96-151 18-70 (391)
56 KOG0801 Predicted E3 ubiquitin 96.8 0.00047 1E-08 60.4 1.3 38 89-127 167-204 (205)
57 COG5152 Uncharacterized conser 96.6 0.00094 2E-08 60.3 1.3 47 98-148 195-241 (259)
58 KOG1941 Acetylcholine receptor 96.4 0.0015 3.3E-08 64.3 2.1 45 100-145 366-413 (518)
59 PF05883 Baculo_RING: Baculovi 96.2 0.0017 3.8E-08 55.3 0.8 36 99-135 26-67 (134)
60 KOG3039 Uncharacterized conser 96.0 0.0061 1.3E-07 56.8 3.7 53 99-151 221-273 (303)
61 KOG2660 Locus-specific chromos 96.0 0.0019 4.1E-08 62.3 0.4 54 95-151 11-64 (331)
62 KOG1428 Inhibitor of type V ad 95.9 0.0047 1E-07 68.9 2.7 67 82-149 3468-3545(3738)
63 KOG1002 Nucleotide excision re 95.8 0.0031 6.8E-08 64.2 0.9 51 96-150 533-588 (791)
64 KOG1571 Predicted E3 ubiquitin 95.8 0.0055 1.2E-07 59.9 2.4 44 98-148 304-347 (355)
65 PF12906 RINGv: RING-variant d 95.8 0.005 1.1E-07 43.2 1.6 40 102-143 1-47 (47)
66 KOG2879 Predicted E3 ubiquitin 95.8 0.008 1.7E-07 56.8 3.3 49 97-148 237-287 (298)
67 KOG1813 Predicted E3 ubiquitin 95.8 0.0039 8.4E-08 59.5 1.2 47 99-149 241-287 (313)
68 PHA02862 5L protein; Provision 95.6 0.0089 1.9E-07 51.6 2.8 45 100-149 3-54 (156)
69 PF04641 Rtf2: Rtf2 RING-finge 95.6 0.013 2.8E-07 55.3 4.1 62 96-158 110-171 (260)
70 KOG1814 Predicted E3 ubiquitin 95.6 0.0065 1.4E-07 60.3 1.9 47 98-145 183-237 (445)
71 PF14570 zf-RING_4: RING/Ubox 95.5 0.0095 2.1E-07 42.1 2.2 45 102-147 1-47 (48)
72 PF10367 Vps39_2: Vacuolar sor 95.5 0.0061 1.3E-07 48.8 1.4 34 96-131 75-108 (109)
73 PHA02825 LAP/PHD finger-like p 95.1 0.018 3.9E-07 50.5 3.0 49 97-150 6-61 (162)
74 PHA03096 p28-like protein; Pro 95.0 0.011 2.4E-07 56.6 1.6 46 100-145 179-231 (284)
75 KOG1952 Transcription factor N 95.0 0.012 2.6E-07 62.9 1.9 49 97-145 189-244 (950)
76 KOG4275 Predicted E3 ubiquitin 94.9 0.0056 1.2E-07 58.3 -0.6 42 99-148 300-342 (350)
77 KOG4692 Predicted E3 ubiquitin 94.8 0.018 3.9E-07 56.3 2.5 49 97-149 420-468 (489)
78 KOG4739 Uncharacterized protei 94.4 0.015 3.3E-07 54.0 0.9 51 101-155 5-55 (233)
79 KOG0826 Predicted E3 ubiquitin 94.4 0.15 3.3E-06 49.5 7.6 48 97-147 298-345 (357)
80 PF08746 zf-RING-like: RING-li 93.9 0.035 7.5E-07 38.3 1.7 41 102-143 1-43 (43)
81 COG5236 Uncharacterized conser 93.9 0.053 1.1E-06 53.0 3.4 60 84-147 45-107 (493)
82 KOG4185 Predicted E3 ubiquitin 93.7 0.048 1E-06 51.9 2.9 47 100-147 4-54 (296)
83 COG5222 Uncharacterized conser 93.3 0.043 9.3E-07 52.6 1.7 43 100-145 275-318 (427)
84 KOG0827 Predicted E3 ubiquitin 93.1 0.0067 1.4E-07 59.8 -4.1 50 100-150 197-247 (465)
85 KOG2114 Vacuolar assembly/sort 93.0 0.047 1E-06 58.6 1.6 41 100-146 841-881 (933)
86 PF14446 Prok-RING_1: Prokaryo 92.9 0.094 2E-06 38.0 2.5 40 99-142 5-44 (54)
87 KOG3268 Predicted E3 ubiquitin 92.7 0.076 1.7E-06 47.5 2.3 31 120-150 189-230 (234)
88 KOG1001 Helicase-like transcri 92.5 0.05 1.1E-06 58.0 1.1 47 100-151 455-503 (674)
89 PF03854 zf-P11: P-11 zinc fin 92.3 0.072 1.6E-06 37.6 1.3 44 101-150 4-48 (50)
90 PF10272 Tmpp129: Putative tra 92.3 0.093 2E-06 51.9 2.6 29 121-149 311-352 (358)
91 PF07800 DUF1644: Protein of u 91.6 0.18 3.8E-06 44.3 3.2 33 99-134 2-46 (162)
92 PF14447 Prok-RING_4: Prokaryo 91.6 0.12 2.6E-06 37.5 1.9 45 100-150 8-52 (55)
93 KOG2817 Predicted E3 ubiquitin 90.6 0.73 1.6E-05 45.9 6.8 48 96-144 331-381 (394)
94 KOG1940 Zn-finger protein [Gen 90.6 0.12 2.7E-06 49.2 1.4 46 99-145 158-204 (276)
95 KOG0309 Conserved WD40 repeat- 90.2 0.17 3.6E-06 54.0 2.1 23 120-142 1047-1069(1081)
96 COG5175 MOT2 Transcriptional r 90.0 0.19 4.2E-06 49.1 2.2 54 98-152 13-68 (480)
97 KOG2932 E3 ubiquitin ligase in 89.5 0.14 3E-06 49.5 0.8 42 101-147 92-133 (389)
98 KOG1100 Predicted E3 ubiquitin 89.2 0.2 4.4E-06 45.9 1.7 40 102-149 161-201 (207)
99 PF01102 Glycophorin_A: Glycop 89.2 0.53 1.2E-05 39.7 4.0 27 18-44 67-93 (122)
100 KOG2034 Vacuolar sorting prote 87.1 0.26 5.7E-06 53.4 1.1 36 97-134 815-850 (911)
101 KOG0298 DEAD box-containing he 86.7 0.19 4.2E-06 56.3 -0.1 48 97-147 1151-1198(1394)
102 KOG4367 Predicted Zn-finger pr 86.3 1 2.3E-05 45.4 4.7 35 98-136 3-37 (699)
103 KOG3800 Predicted E3 ubiquitin 85.9 0.6 1.3E-05 44.7 2.7 50 101-151 2-54 (300)
104 KOG3161 Predicted E3 ubiquitin 85.3 0.24 5.2E-06 52.0 -0.2 42 100-145 12-54 (861)
105 KOG1829 Uncharacterized conser 84.8 0.97 2.1E-05 47.4 3.9 44 98-145 510-558 (580)
106 KOG3002 Zn finger protein [Gen 84.8 0.71 1.5E-05 44.7 2.7 47 97-149 46-92 (299)
107 COG5220 TFB3 Cdk activating ki 84.5 0.37 8E-06 45.1 0.6 50 98-147 9-63 (314)
108 PF01102 Glycophorin_A: Glycop 84.2 1.3 2.8E-05 37.4 3.7 30 18-47 64-93 (122)
109 KOG3053 Uncharacterized conser 83.8 0.51 1.1E-05 44.5 1.2 52 97-149 18-83 (293)
110 KOG0802 E3 ubiquitin ligase [P 82.6 0.82 1.8E-05 47.6 2.3 47 99-153 479-525 (543)
111 KOG1609 Protein involved in mR 82.2 0.67 1.5E-05 43.9 1.4 51 99-150 78-136 (323)
112 PF05290 Baculo_IE-1: Baculovi 81.2 1.2 2.6E-05 38.2 2.4 53 98-150 79-134 (140)
113 COG5183 SSM4 Protein involved 80.8 1.1 2.3E-05 48.5 2.4 50 98-149 11-67 (1175)
114 KOG3899 Uncharacterized conser 80.8 0.81 1.8E-05 44.0 1.4 32 121-152 325-369 (381)
115 PF02439 Adeno_E3_CR2: Adenovi 79.8 4.2 9.1E-05 27.4 4.1 25 21-45 8-32 (38)
116 KOG1812 Predicted E3 ubiquitin 79.3 0.82 1.8E-05 45.7 0.9 38 98-136 145-183 (384)
117 KOG4362 Transcriptional regula 77.5 0.66 1.4E-05 49.3 -0.3 48 99-150 21-71 (684)
118 KOG0825 PHD Zn-finger protein 77.5 1.3 2.7E-05 47.8 1.7 53 98-150 95-156 (1134)
119 KOG0269 WD40 repeat-containing 75.6 2.5 5.3E-05 45.5 3.2 41 100-142 780-820 (839)
120 KOG3113 Uncharacterized conser 75.1 3.6 7.8E-05 38.9 3.8 60 98-159 110-169 (293)
121 PF06667 PspB: Phage shock pro 74.4 9.4 0.0002 29.5 5.4 27 20-46 5-31 (75)
122 smart00249 PHD PHD zinc finger 72.1 2.3 4.9E-05 28.0 1.4 31 101-132 1-31 (47)
123 KOG2068 MOT2 transcription fac 70.1 5.5 0.00012 39.0 3.9 50 99-149 249-299 (327)
124 KOG4718 Non-SMC (structural ma 69.9 2.1 4.5E-05 39.4 1.0 43 100-145 182-224 (235)
125 smart00132 LIM Zinc-binding do 69.9 4.2 9E-05 25.8 2.2 37 101-147 1-37 (39)
126 TIGR02976 phageshock_pspB phag 68.7 14 0.0003 28.6 5.2 20 28-47 13-32 (75)
127 KOG3005 GIY-YIG type nuclease 66.9 2.7 5.9E-05 39.9 1.1 48 100-147 183-242 (276)
128 PHA02650 hypothetical protein; 66.8 15 0.00032 28.7 4.9 11 30-40 61-71 (81)
129 PF07010 Endomucin: Endomucin; 66.6 12 0.00025 35.0 5.1 33 8-40 184-216 (259)
130 PF13901 DUF4206: Domain of un 65.6 4.4 9.6E-05 36.8 2.2 41 99-145 152-197 (202)
131 PF15102 TMEM154: TMEM154 prot 64.3 3.3 7.1E-05 36.0 1.1 11 126-136 126-136 (146)
132 PF15176 LRR19-TM: Leucine-ric 64.3 13 0.00028 30.4 4.4 31 15-45 14-44 (102)
133 PF07975 C1_4: TFIIH C1-like d 63.9 4.9 0.00011 28.8 1.7 43 102-144 2-50 (51)
134 PF11023 DUF2614: Protein of u 63.4 32 0.00069 28.7 6.6 28 118-151 72-99 (114)
135 KOG2066 Vacuolar assembly/sort 63.3 2.6 5.6E-05 45.5 0.3 43 99-143 784-830 (846)
136 PF02891 zf-MIZ: MIZ/SP-RING z 63.1 6.9 0.00015 27.6 2.4 43 100-146 3-50 (50)
137 TIGR00622 ssl1 transcription f 62.5 8.7 0.00019 32.0 3.2 46 99-144 55-110 (112)
138 PRK09458 pspB phage shock prot 62.5 15 0.00033 28.4 4.3 29 19-47 4-32 (75)
139 COG5109 Uncharacterized conser 61.2 6.3 0.00014 38.5 2.4 46 97-143 334-382 (396)
140 PF01708 Gemini_mov: Geminivir 59.6 8.6 0.00019 30.8 2.5 35 6-40 26-60 (91)
141 PF13719 zinc_ribbon_5: zinc-r 59.4 6.3 0.00014 26.0 1.5 26 101-126 4-36 (37)
142 PF06906 DUF1272: Protein of u 58.4 16 0.00035 26.7 3.6 45 101-150 7-54 (57)
143 KOG1815 Predicted E3 ubiquitin 58.3 5.5 0.00012 40.4 1.7 37 97-136 68-104 (444)
144 KOG3039 Uncharacterized conser 57.8 9.8 0.00021 36.0 3.0 35 97-135 41-75 (303)
145 PF10571 UPF0547: Uncharacteri 57.6 5 0.00011 24.7 0.7 23 101-125 2-24 (26)
146 PF05399 EVI2A: Ectropic viral 57.1 27 0.00059 32.3 5.7 24 15-38 127-150 (227)
147 PHA03054 IMV membrane protein; 56.6 28 0.00062 26.6 4.8 6 18-23 49-54 (72)
148 PHA02975 hypothetical protein; 55.7 28 0.0006 26.5 4.6 11 17-27 44-54 (69)
149 PF12877 DUF3827: Domain of un 55.4 9.2 0.0002 40.6 2.7 29 18-46 269-297 (684)
150 PF13908 Shisa: Wnt and FGF in 54.9 7.4 0.00016 34.4 1.7 8 24-31 88-95 (179)
151 KOG1812 Predicted E3 ubiquitin 53.7 5.8 0.00013 39.7 0.9 44 99-143 306-351 (384)
152 PF00628 PHD: PHD-finger; Int 53.5 7.6 0.00016 26.7 1.2 43 102-145 2-50 (51)
153 PF15330 SIT: SHP2-interacting 53.5 19 0.00041 29.7 3.7 26 20-45 2-27 (107)
154 KOG2807 RNA polymerase II tran 53.1 12 0.00026 36.7 2.9 47 98-145 329-375 (378)
155 PF00412 LIM: LIM domain; Int 52.9 11 0.00024 26.4 2.0 39 102-150 1-39 (58)
156 PHA02819 hypothetical protein; 52.7 31 0.00066 26.4 4.4 6 18-23 47-52 (71)
157 PF05393 Hum_adeno_E3A: Human 51.5 15 0.00032 29.4 2.6 8 38-45 51-58 (94)
158 PF01363 FYVE: FYVE zinc finge 50.7 7.3 0.00016 28.7 0.8 37 98-134 8-44 (69)
159 KOG3842 Adaptor protein Pellin 49.6 17 0.00037 35.6 3.3 50 99-149 341-415 (429)
160 PLN02189 cellulose synthase 48.5 22 0.00048 40.0 4.4 50 100-149 35-88 (1040)
161 PF02038 ATP1G1_PLM_MAT8: ATP1 47.7 12 0.00027 26.7 1.5 25 20-44 16-40 (50)
162 PF15179 Myc_target_1: Myc tar 47.5 37 0.00081 30.7 4.9 34 14-47 18-51 (197)
163 PF06365 CD34_antigen: CD34/Po 46.9 21 0.00046 32.7 3.4 9 18-26 101-109 (202)
164 PRK13415 flagella biosynthesis 46.4 40 0.00086 31.3 5.0 27 20-46 67-93 (219)
165 PF15050 SCIMP: SCIMP protein 44.7 87 0.0019 26.5 6.3 7 39-45 31-37 (133)
166 KOG3457 Sec61 protein transloc 44.1 26 0.00057 27.8 3.0 34 9-44 53-86 (88)
167 PF10577 UPF0560: Uncharacteri 42.6 38 0.00082 37.1 4.9 28 19-46 273-301 (807)
168 cd00065 FYVE FYVE domain; Zinc 42.3 18 0.00039 25.4 1.8 35 100-134 3-37 (57)
169 KOG2041 WD40 repeat protein [G 42.2 14 0.00031 39.9 1.7 27 117-147 1158-1184(1189)
170 PLN02436 cellulose synthase A 42.0 32 0.00069 38.9 4.3 51 99-149 36-90 (1094)
171 PF08374 Protocadherin: Protoc 41.5 24 0.00052 32.7 2.8 8 36-43 57-64 (221)
172 PF08114 PMP1_2: ATPase proteo 39.4 27 0.00059 23.9 2.1 8 37-44 29-36 (43)
173 PRK01844 hypothetical protein; 38.9 65 0.0014 24.8 4.4 28 18-45 5-32 (72)
174 PF06844 DUF1244: Protein of u 38.6 18 0.00039 27.3 1.3 12 124-135 11-22 (68)
175 smart00064 FYVE Protein presen 38.5 26 0.00057 25.6 2.2 37 99-135 10-46 (68)
176 PF07172 GRP: Glycine rich pro 38.3 28 0.00062 28.0 2.5 14 18-31 6-19 (95)
177 PF14316 DUF4381: Domain of un 37.7 71 0.0015 27.2 5.1 8 8-15 11-18 (146)
178 PF11346 DUF3149: Protein of u 37.5 59 0.0013 22.4 3.6 24 22-45 13-36 (42)
179 PF13717 zinc_ribbon_4: zinc-r 36.6 20 0.00043 23.5 1.1 26 101-126 4-36 (36)
180 PF14584 DUF4446: Protein of u 36.5 34 0.00075 29.8 2.9 38 80-118 78-115 (151)
181 PLN02638 cellulose synthase A 34.8 49 0.0011 37.4 4.4 50 100-149 18-71 (1079)
182 PF03229 Alpha_GJ: Alphavirus 33.6 89 0.0019 26.3 4.7 26 20-45 89-114 (126)
183 PF14979 TMEM52: Transmembrane 33.2 1.2E+02 0.0026 26.5 5.6 35 12-46 14-49 (154)
184 COG4741 Predicted secreted end 33.2 47 0.001 29.3 3.2 27 19-45 4-30 (175)
185 PF06305 DUF1049: Protein of u 33.1 77 0.0017 23.0 4.0 30 15-44 18-47 (68)
186 PF05393 Hum_adeno_E3A: Human 32.9 71 0.0015 25.6 3.8 28 19-46 37-64 (94)
187 KOG2979 Protein involved in DN 32.9 24 0.00052 33.5 1.5 42 99-143 176-219 (262)
188 PF10717 ODV-E18: Occlusion-de 32.7 58 0.0013 25.8 3.3 13 12-24 20-32 (85)
189 PRK00523 hypothetical protein; 32.1 95 0.0021 23.9 4.3 27 19-45 7-33 (72)
190 COG3763 Uncharacterized protei 31.8 1E+02 0.0022 23.7 4.4 28 18-45 5-32 (71)
191 PF11174 DUF2970: Protein of u 31.8 60 0.0013 23.6 3.1 28 11-38 25-52 (56)
192 KOG3579 Predicted E3 ubiquitin 31.7 28 0.00062 33.6 1.7 39 97-136 266-305 (352)
193 KOG3637 Vitronectin receptor, 31.7 29 0.00062 39.3 2.1 30 12-41 973-1002(1030)
194 PF07191 zinc-ribbons_6: zinc- 31.5 16 0.00035 27.9 0.1 40 100-148 2-41 (70)
195 PF14569 zf-UDP: Zinc-binding 31.4 53 0.0012 25.7 2.9 51 99-149 9-63 (80)
196 PF14311 DUF4379: Domain of un 31.2 40 0.00086 23.9 2.1 23 120-143 33-55 (55)
197 PF12768 Rax2: Cortical protei 31.1 39 0.00084 32.4 2.6 28 18-45 230-257 (281)
198 PLN02400 cellulose synthase 31.1 56 0.0012 37.1 4.1 50 100-149 37-90 (1085)
199 KOG3842 Adaptor protein Pellin 31.0 28 0.00061 34.1 1.6 42 99-146 290-350 (429)
200 PF07406 NICE-3: NICE-3 protei 30.9 1.4E+02 0.003 27.0 6.0 27 9-35 3-29 (186)
201 PF04710 Pellino: Pellino; In 30.5 17 0.00036 36.6 0.0 50 99-149 328-402 (416)
202 PRK14710 hypothetical protein; 30.2 34 0.00073 26.3 1.6 20 11-30 5-24 (86)
203 PF05961 Chordopox_A13L: Chord 29.9 1.2E+02 0.0026 23.0 4.4 21 26-46 8-28 (68)
204 PHA02819 hypothetical protein; 29.9 1.4E+02 0.003 22.9 4.8 8 19-26 45-52 (71)
205 smart00647 IBR In Between Ring 29.7 17 0.00037 25.8 -0.0 21 113-133 38-58 (64)
206 PF13832 zf-HC5HC2H_2: PHD-zin 29.7 43 0.00092 26.8 2.3 32 98-132 54-87 (110)
207 PF14914 LRRC37AB_C: LRRC37A/B 29.5 88 0.0019 27.4 4.2 24 20-43 121-144 (154)
208 KOG2113 Predicted RNA binding 29.3 45 0.00098 32.7 2.7 46 96-147 340-386 (394)
209 PF12606 RELT: Tumour necrosis 29.2 56 0.0012 23.3 2.5 6 36-41 22-27 (50)
210 PF07649 C1_3: C1-like domain; 29.0 41 0.00088 20.8 1.6 29 101-130 2-30 (30)
211 PF12606 RELT: Tumour necrosis 28.9 59 0.0013 23.2 2.5 23 24-46 5-27 (50)
212 PTZ00370 STEVOR; Provisional 28.9 61 0.0013 31.4 3.4 9 37-45 273-281 (296)
213 PF15106 TMEM156: TMEM156 prot 28.8 77 0.0017 29.3 3.9 20 18-37 177-196 (226)
214 PF04689 S1FA: DNA binding pro 28.8 49 0.0011 24.9 2.2 34 12-45 8-41 (69)
215 PF13314 DUF4083: Domain of un 28.6 1.5E+02 0.0034 21.8 4.7 8 38-45 26-33 (58)
216 PF15330 SIT: SHP2-interacting 28.4 89 0.0019 25.7 3.9 30 17-46 2-31 (107)
217 TIGR01477 RIFIN variant surfac 28.4 70 0.0015 31.8 3.9 8 20-27 312-319 (353)
218 PF04277 OAD_gamma: Oxaloaceta 28.2 1.6E+02 0.0035 22.0 5.2 27 19-45 6-32 (79)
219 PF04423 Rad50_zn_hook: Rad50 28.1 21 0.00045 25.3 0.1 11 139-149 22-32 (54)
220 KOG3799 Rab3 effector RIM1 and 28.1 15 0.00032 31.7 -0.7 44 95-146 61-116 (169)
221 PF04216 FdhE: Protein involve 28.0 8.4 0.00018 36.8 -2.5 46 99-145 172-219 (290)
222 PTZ00046 rifin; Provisional 28.0 72 0.0016 31.8 3.9 7 20-26 317-323 (358)
223 KOG1094 Discoidin domain recep 27.9 59 0.0013 34.8 3.4 9 295-303 713-721 (807)
224 KOG1245 Chromatin remodeling c 27.7 20 0.00042 41.8 -0.1 49 98-147 1107-1159(1404)
225 PF12191 stn_TNFRSF12A: Tumour 27.4 23 0.00051 30.1 0.3 25 14-38 75-99 (129)
226 KOG0956 PHD finger protein AF1 27.3 19 0.00041 38.7 -0.3 48 100-147 118-181 (900)
227 PF14169 YdjO: Cold-inducible 27.2 33 0.00071 25.4 1.0 14 137-150 39-52 (59)
228 PRK11088 rrmA 23S rRNA methylt 26.6 38 0.00081 31.7 1.6 25 100-125 3-27 (272)
229 PF06679 DUF1180: Protein of u 26.5 1.3E+02 0.0028 26.7 4.8 20 24-43 99-118 (163)
230 PHA03240 envelope glycoprotein 26.4 69 0.0015 29.8 3.2 7 19-25 215-221 (258)
231 PRK05978 hypothetical protein; 26.3 40 0.00086 29.4 1.6 24 122-150 42-65 (148)
232 PHA02657 hypothetical protein; 26.2 1E+02 0.0023 24.5 3.7 10 82-91 75-84 (95)
233 KOG0824 Predicted E3 ubiquitin 26.1 27 0.00057 34.0 0.5 48 98-148 104-151 (324)
234 PF05605 zf-Di19: Drought indu 25.9 34 0.00074 24.1 0.9 37 99-146 2-40 (54)
235 PF06024 DUF912: Nucleopolyhed 25.7 34 0.00074 27.7 1.0 26 17-42 60-85 (101)
236 PF03911 Sec61_beta: Sec61beta 25.6 80 0.0017 21.4 2.6 23 9-31 13-35 (41)
237 PF10717 ODV-E18: Occlusion-de 25.4 84 0.0018 24.9 3.0 18 21-38 26-43 (85)
238 PF11395 DUF2873: Protein of u 24.6 1.4E+02 0.0031 20.1 3.6 20 22-41 11-30 (43)
239 PF07204 Orthoreo_P10: Orthore 24.6 73 0.0016 25.8 2.6 28 18-45 41-68 (98)
240 COG3813 Uncharacterized protei 24.5 79 0.0017 24.5 2.7 49 102-153 8-57 (84)
241 PLN02195 cellulose synthase A 24.5 65 0.0014 36.2 3.1 48 100-148 7-59 (977)
242 PF10669 Phage_Gp23: Protein g 24.3 99 0.0022 25.3 3.4 15 21-35 18-32 (121)
243 PF02318 FYVE_2: FYVE-type zin 24.3 48 0.001 27.4 1.7 47 98-145 53-102 (118)
244 PF05399 EVI2A: Ectropic viral 24.2 1.2E+02 0.0026 28.2 4.3 17 17-33 132-148 (227)
245 smart00531 TFIIE Transcription 24.1 73 0.0016 27.3 2.8 15 138-152 124-138 (147)
246 KOG3653 Transforming growth fa 24.1 1.2E+02 0.0027 31.5 4.8 13 126-138 291-303 (534)
247 cd04718 BAH_plant_2 BAH, or Br 24.1 28 0.00061 30.4 0.2 26 125-150 2-31 (148)
248 PF11980 DUF3481: Domain of un 23.7 1.1E+02 0.0024 24.3 3.4 37 10-46 8-44 (87)
249 PF07282 OrfB_Zn_ribbon: Putat 23.5 1.1E+02 0.0023 22.3 3.3 34 98-131 27-62 (69)
250 PRK03427 cell division protein 23.0 92 0.002 30.7 3.6 27 20-46 7-33 (333)
251 COG5627 MMS21 DNA repair prote 23.0 42 0.00092 31.6 1.2 40 99-141 189-230 (275)
252 PHA02975 hypothetical protein; 22.9 1.4E+02 0.0031 22.7 3.8 17 14-30 44-60 (69)
253 PHA03099 epidermal growth fact 22.8 69 0.0015 27.5 2.3 21 26-46 110-130 (139)
254 COG2268 Uncharacterized protei 22.7 54 0.0012 34.5 2.0 15 13-27 6-20 (548)
255 PF02060 ISK_Channel: Slow vol 22.5 1.8E+02 0.0038 24.9 4.7 29 17-45 44-72 (129)
256 PF09723 Zn-ribbon_8: Zinc rib 22.5 23 0.0005 23.9 -0.5 25 120-145 10-34 (42)
257 PF07438 DUF1514: Protein of u 21.9 86 0.0019 23.6 2.4 9 20-28 4-12 (66)
258 PF04478 Mid2: Mid2 like cell 21.8 13 0.00029 32.5 -2.2 17 30-46 62-78 (154)
259 PF07219 HemY_N: HemY protein 21.8 1.5E+02 0.0032 23.9 4.1 27 19-45 17-43 (108)
260 KOG1356 Putative transcription 21.6 33 0.00072 37.6 0.2 47 99-147 229-281 (889)
261 PF03908 Sec20: Sec20; InterP 21.5 84 0.0018 24.6 2.5 14 25-38 75-88 (92)
262 PF05715 zf-piccolo: Piccolo Z 21.5 67 0.0015 23.8 1.7 13 137-149 2-14 (61)
263 PF11014 DUF2852: Protein of u 21.4 1.6E+02 0.0035 24.7 4.2 30 14-43 7-36 (115)
264 PF10497 zf-4CXXC_R1: Zinc-fin 21.3 1.2E+02 0.0026 24.7 3.4 24 122-145 37-69 (105)
265 KOG1815 Predicted E3 ubiquitin 21.1 31 0.00066 35.1 -0.1 36 100-136 227-267 (444)
266 PHA03030 hypothetical protein; 21.1 55 0.0012 26.9 1.3 14 32-45 14-27 (122)
267 PHA03049 IMV membrane protein; 20.9 2.1E+02 0.0045 21.7 4.2 11 35-45 17-27 (68)
268 PHA03049 IMV membrane protein; 20.7 1.2E+02 0.0026 23.0 2.9 9 36-44 21-29 (68)
269 PF05961 Chordopox_A13L: Chord 20.5 1.2E+02 0.0026 23.0 2.9 23 24-46 9-31 (68)
270 PRK11486 flagellar biosynthesi 20.4 1.4E+02 0.003 25.3 3.7 18 24-41 25-42 (124)
271 PF13807 GNVR: G-rich domain o 20.4 2.1E+02 0.0045 21.7 4.5 27 13-39 53-79 (82)
272 PF12955 DUF3844: Domain of un 20.2 1.4E+02 0.003 24.6 3.5 26 15-40 66-91 (103)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.2e-17 Score=159.23 Aligned_cols=76 Identities=36% Similarity=0.830 Sum_probs=66.5
Q ss_pred CCCCHHHHhhCCceeeecccCCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCC-CCcccccccCCC
Q 039646 75 SGLDQSLIDALPMFYYKDIVGLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNST-CPLCRGTLSSSD 151 (325)
Q Consensus 75 ~g~~~~~i~~Lp~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~t-CPlCR~~l~~~~ 151 (325)
..+.++.++++|..+|....+......|+||||+|+.+|++++|| |+|.||..||++||.++.+ ||+|++++....
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 457789999999999998765555578999999999999999999 9999999999999998755 999999776543
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.46 E-value=2.6e-14 Score=98.82 Aligned_cols=43 Identities=47% Similarity=1.240 Sum_probs=40.4
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCR 144 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR 144 (325)
+|+||+++|..++.+..++ |+|.||..||.+|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999999999999999 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.37 E-value=2.2e-12 Score=119.63 Aligned_cols=75 Identities=24% Similarity=0.628 Sum_probs=58.3
Q ss_pred CCCCCHHHHhhCCceeeecc--cCCCCCCcCceecccccCCC----ceeecCCCCceecHHHHHHHHhcCCCCCcccccc
Q 039646 74 DSGLDQSLIDALPMFYYKDI--VGLKEPFDCAVCLCEFSEHD----NLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 74 ~~g~~~~~i~~Lp~~~~~~~--~~~~~~~~C~ICle~~~~~~----~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
..+....+++.+|.+...-. .+...+.+|+||++.+.... .+.+++.|+|.||..||.+|+..+.+||+||.++
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 45668999999999865432 23345678999999986543 1234445999999999999999999999999977
Q ss_pred c
Q 039646 148 S 148 (325)
Q Consensus 148 ~ 148 (325)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 5
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.22 E-value=8.5e-12 Score=95.72 Aligned_cols=45 Identities=42% Similarity=0.980 Sum_probs=35.6
Q ss_pred CCcCceecccccCC----------CceeecCCCCceecHHHHHHHHhcCCCCCccc
Q 039646 99 PFDCAVCLCEFSEH----------DNLRLLPSCSHAFHITCIDTWLLSNSTCPLCR 144 (325)
Q Consensus 99 ~~~C~ICle~~~~~----------~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR 144 (325)
+..|+||++.|.+. -.+...+ |+|.||..||.+||..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 44699999999322 2344555 999999999999999999999998
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.4e-11 Score=113.38 Aligned_cols=67 Identities=28% Similarity=0.724 Sum_probs=51.2
Q ss_pred HHHHhhCCceeeecccCCCCCCcCceeccc-ccCC---------CceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 79 QSLIDALPMFYYKDIVGLKEPFDCAVCLCE-FSEH---------DNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 79 ~~~i~~Lp~~~~~~~~~~~~~~~C~ICle~-~~~~---------~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
++.-+-+|.++..+. ..++..|.|||++ |..+ ..+..|| |||+||.+|++.|++++++||+||.++.
T Consensus 269 kdl~~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 269 KDLNAMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hHHHhhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 344444555544432 4567889999999 5544 2467888 9999999999999999999999999954
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=8.4e-12 Score=117.49 Aligned_cols=52 Identities=42% Similarity=1.179 Sum_probs=47.2
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHh-cCCCCCcccccccC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-SNSTCPLCRGTLSS 149 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~ 149 (325)
....+|+|||+.|..+|.++.|| |.|.||..|+++|+. -+..||+||.++++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 44578999999999999999999 999999999999999 46679999999875
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.3e-09 Score=102.46 Aligned_cols=50 Identities=34% Similarity=0.787 Sum_probs=43.2
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
....|.+||+..+. +..+| |||+||+.||..|...+..||+||..+.+..
T Consensus 238 a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 238 ATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 45789999998655 66788 9999999999999999999999999876643
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.91 E-value=9.3e-10 Score=78.02 Aligned_cols=46 Identities=30% Similarity=0.822 Sum_probs=39.1
Q ss_pred CCcCceecccccCCCceeecCCCCce-ecHHHHHHHHhcCCCCCccccccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHA-FHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
+..|.||++.... +..+| |||. ||..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4579999998654 77888 9999 999999999999999999999874
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.91 E-value=9.2e-10 Score=98.77 Aligned_cols=52 Identities=29% Similarity=0.788 Sum_probs=42.0
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc----------------CCCCCcccccccCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS----------------NSTCPLCRGTLSSSD 151 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~----------------~~tCPlCR~~l~~~~ 151 (325)
..++.+|+||++.+.+ +++++ |||.||..||..|+.. ...||+||..+....
T Consensus 15 ~~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 15 SGGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CCCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 4567899999998765 56677 9999999999999852 346999999986543
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.89 E-value=1.3e-09 Score=73.48 Aligned_cols=44 Identities=52% Similarity=1.250 Sum_probs=36.6
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhc-CCCCCcccccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTL 147 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l 147 (325)
+|+||++.+ .+.+...+ |+|.||..|+..|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 33455565 9999999999999997 77799999764
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.4e-09 Score=99.51 Aligned_cols=52 Identities=29% Similarity=0.710 Sum_probs=41.9
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcC---CCCCcccccccCCCC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN---STCPLCRGTLSSSDN 152 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~---~tCPlCR~~l~~~~~ 152 (325)
...++|.|||+.-++ ++++. |||.||+.||.+||+.+ +.||+|+..+..+..
T Consensus 45 ~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 456899999998544 55665 99999999999999863 449999998876543
No 12
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.8e-09 Score=109.93 Aligned_cols=54 Identities=35% Similarity=0.769 Sum_probs=46.4
Q ss_pred CCCCcCceecccccCCCc--eeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 97 KEPFDCAVCLCEFSEHDN--LRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~--~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
..+..|+||++++..+.. +..+| |+|+||..|+..|+++.++||+||..+....
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDYV 344 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhccc
Confidence 346789999999987655 67888 9999999999999999999999999665543
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.82 E-value=3e-09 Score=83.54 Aligned_cols=52 Identities=33% Similarity=0.771 Sum_probs=38.9
Q ss_pred CCCCcCceecccccC--------C-CceeecCCCCceecHHHHHHHHhc---CCCCCccccccc
Q 039646 97 KEPFDCAVCLCEFSE--------H-DNLRLLPSCSHAFHITCIDTWLLS---NSTCPLCRGTLS 148 (325)
Q Consensus 97 ~~~~~C~ICle~~~~--------~-~~~~~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~l~ 148 (325)
.++..|.||...|.. + +.+.+.-.|+|.||.+||.+|+.. +..||+||++..
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 346789999988852 1 223333359999999999999985 467999998764
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.81 E-value=3.1e-09 Score=71.55 Aligned_cols=39 Identities=38% Similarity=1.069 Sum_probs=32.6
Q ss_pred CceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcc
Q 039646 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLC 143 (325)
Q Consensus 102 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlC 143 (325)
|+||++.+.+ .+..++ |||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998866 346777 99999999999999998889998
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.75 E-value=3.3e-09 Score=96.61 Aligned_cols=53 Identities=32% Similarity=0.817 Sum_probs=40.0
Q ss_pred CCCCCcCceecccccCC-----CceeecCCCCceecHHHHHHHHhcC------CCCCccccccc
Q 039646 96 LKEPFDCAVCLCEFSEH-----DNLRLLPSCSHAFHITCIDTWLLSN------STCPLCRGTLS 148 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~-----~~~~~lp~C~H~FH~~CI~~Wl~~~------~tCPlCR~~l~ 148 (325)
...+.+|+|||+..-.. ....+|+.|+|.||..||..|...+ .+||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 44567899999986332 2234566699999999999999753 35999999764
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.67 E-value=2.2e-08 Score=73.52 Aligned_cols=47 Identities=28% Similarity=0.581 Sum_probs=41.0
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
..|+||++.+.+ +.+++ |||.|+..||..|+..+.+||+|+..+...
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~ 48 (63)
T smart00504 2 FLCPISLEVMKD---PVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHE 48 (63)
T ss_pred cCCcCCCCcCCC---CEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence 579999999876 46777 999999999999999988999999887543
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.2e-08 Score=89.98 Aligned_cols=52 Identities=29% Similarity=0.682 Sum_probs=42.6
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
+...|+|||+.+..... .-+ +|||+||..||..-+.....||+||+.|..+.
T Consensus 130 ~~~~CPiCl~~~sek~~-vsT-kCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP-VST-KCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccCCCceecchhhccc-ccc-ccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 44779999999866432 224 49999999999999999999999999887654
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.64 E-value=2.2e-08 Score=68.84 Aligned_cols=38 Identities=34% Similarity=0.897 Sum_probs=29.6
Q ss_pred CceecccccCCCceeecCCCCceecHHHHHHHHhcC----CCCCcc
Q 039646 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN----STCPLC 143 (325)
Q Consensus 102 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCPlC 143 (325)
|+||++.|.+ ++.|+ |||.|+..||..|+... ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999977 77888 99999999999999753 359988
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.64 E-value=2.1e-08 Score=69.31 Aligned_cols=44 Identities=32% Similarity=0.819 Sum_probs=38.2
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRG 145 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 145 (325)
.|.||++.|......++++ |||.||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666788888 9999999999999866778999985
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.58 E-value=2.9e-08 Score=67.08 Aligned_cols=39 Identities=44% Similarity=1.174 Sum_probs=32.8
Q ss_pred CceecccccCCCceeecCCCCceecHHHHHHHHh--cCCCCCcc
Q 039646 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL--SNSTCPLC 143 (325)
Q Consensus 102 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~--~~~tCPlC 143 (325)
|+||++.+... ..+++ |+|.||..||.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998663 34777 999999999999999 45569998
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=3.9e-08 Score=97.45 Aligned_cols=55 Identities=33% Similarity=0.612 Sum_probs=45.8
Q ss_pred cCCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCCC
Q 039646 94 VGLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDN 152 (325)
Q Consensus 94 ~~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 152 (325)
..+.....|+||++.|.. +++++ |+|.||..||..|+.....||+||..+.....
T Consensus 21 ~~Le~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL 75 (397)
T ss_pred cccccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence 345667899999999865 45677 99999999999999988889999998875433
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.56 E-value=5e-08 Score=63.30 Aligned_cols=38 Identities=47% Similarity=1.231 Sum_probs=32.5
Q ss_pred CceecccccCCCceeecCCCCceecHHHHHHHHh-cCCCCCcc
Q 039646 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-SNSTCPLC 143 (325)
Q Consensus 102 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlC 143 (325)
|+||++.. ..+..++ |+|.||..|+..|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999883 4577888 999999999999998 56679987
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.41 E-value=1.5e-07 Score=72.73 Aligned_cols=29 Identities=48% Similarity=0.948 Sum_probs=27.0
Q ss_pred CCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 120 SCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 120 ~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
.|.|.||.+||.+||..+..||+||++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 49999999999999999999999998764
No 24
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.2e-07 Score=91.63 Aligned_cols=51 Identities=33% Similarity=0.842 Sum_probs=39.3
Q ss_pred CCCcCceecccccCCC--------------ceeecCCCCceecHHHHHHHHh-cCCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSEHD--------------NLRLLPSCSHAFHITCIDTWLL-SNSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~--------------~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~ 149 (325)
...+|+|||.++..-. ....+| |.|+||..|+.+|+. .+-.||+||.++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4568999998863211 123557 999999999999999 45589999998864
No 25
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.32 E-value=7.7e-08 Score=101.74 Aligned_cols=72 Identities=26% Similarity=0.607 Sum_probs=51.1
Q ss_pred CCHHHHhhCCceeeecccCCCCCCcCceecccccCCC---ceeecCCCCceecHHHHHHHHhc--CCCCCccccccc
Q 039646 77 LDQSLIDALPMFYYKDIVGLKEPFDCAVCLCEFSEHD---NLRLLPSCSHAFHITCIDTWLLS--NSTCPLCRGTLS 148 (325)
Q Consensus 77 ~~~~~i~~Lp~~~~~~~~~~~~~~~C~ICle~~~~~~---~~~~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~l~ 148 (325)
...++++.|-.++..-..+..+-.+||||+..+..-+ .-..+++|.|.||..|+.+|++. +.+||+||.+++
T Consensus 1447 ~ngs~~D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1447 KNGSFMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred ccchHHHHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3445566665555555456667789999998775221 11234569999999999999986 567999998764
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.7e-07 Score=86.04 Aligned_cols=50 Identities=30% Similarity=0.771 Sum_probs=41.4
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHH-HHhcCCC-CCcccccccCCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDT-WLLSNST-CPLCRGTLSSSD 151 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~-Wl~~~~t-CPlCR~~l~~~~ 151 (325)
.+..|+||++.... +..++ |||+||..||.. |-.++.. ||+||+.+.++.
T Consensus 214 ~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 46789999998655 66777 999999999999 8777666 999999876654
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.7e-07 Score=71.77 Aligned_cols=50 Identities=36% Similarity=0.798 Sum_probs=36.6
Q ss_pred CCcCceecccccC---------CCceeecCCCCceecHHHHHHHHhc---CCCCCccccccc
Q 039646 99 PFDCAVCLCEFSE---------HDNLRLLPSCSHAFHITCIDTWLLS---NSTCPLCRGTLS 148 (325)
Q Consensus 99 ~~~C~ICle~~~~---------~~~~~~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~l~ 148 (325)
+..|-||.-.|.. ++-+.++-.|.|.||..||.+|+.. +..||+||++..
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3479999888742 2223333359999999999999975 445999998753
No 28
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.25 E-value=1.9e-07 Score=89.63 Aligned_cols=53 Identities=34% Similarity=0.733 Sum_probs=45.5
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDN 152 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 152 (325)
+..-..|-||.+.|.. +.++| |+|.||.-||..+|..+..||+|+.++.....
T Consensus 20 lD~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred hHHHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 3445689999999977 66788 99999999999999999999999998866543
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.15 E-value=1.4e-06 Score=61.77 Aligned_cols=42 Identities=26% Similarity=0.797 Sum_probs=33.2
Q ss_pred cCceecccccCCCceeecCCCC-----ceecHHHHHHHHhc--CCCCCccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCS-----HAFHITCIDTWLLS--NSTCPLCR 144 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~--~~tCPlCR 144 (325)
.|.||++ ...++.+.++| |. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 44455566788 85 89999999999975 44799995
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.14 E-value=1.1e-06 Score=67.26 Aligned_cols=50 Identities=30% Similarity=0.562 Sum_probs=39.0
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-CCCCCcccccccCCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSSSD 151 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~ 151 (325)
+.+.|+||.+.|.+ ++++| |||.|...||..|+.. +.+||+|+..+....
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESD 53 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred cccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence 35789999999877 77888 9999999999999998 888999998887643
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.2e-06 Score=88.17 Aligned_cols=51 Identities=29% Similarity=0.579 Sum_probs=40.2
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-----CCCCCcccccccCCCCC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-----NSTCPLCRGTLSSSDNS 153 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~~l~~~~~~ 153 (325)
+..|+|||++... ...+. |||+||..||..+|.. ...||+||..+..++..
T Consensus 186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 6789999998655 34444 9999999999998864 34599999998875543
No 32
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=6.6e-07 Score=83.60 Aligned_cols=54 Identities=31% Similarity=0.663 Sum_probs=43.6
Q ss_pred CCCCcCceecccccCCC-------ceeecCCCCceecHHHHHHHHh--cCCCCCcccccccCCC
Q 039646 97 KEPFDCAVCLCEFSEHD-------NLRLLPSCSHAFHITCIDTWLL--SNSTCPLCRGTLSSSD 151 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~-------~~~~lp~C~H~FH~~CI~~Wl~--~~~tCPlCR~~l~~~~ 151 (325)
.++..|+||-..+.... +.-.|. |+|+||..||.-|-. ++++||.|++.+..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 45678999998875444 566787 999999999999975 6889999999886543
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.08 E-value=1.3e-06 Score=82.45 Aligned_cols=51 Identities=31% Similarity=0.690 Sum_probs=42.9
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
++..-..|-||-+-|.. +..++ |||.||.-||...|..+..||+||.+...
T Consensus 21 ~LDs~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 21 GLDSMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred cchhHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence 34455679999998876 45666 99999999999999999999999987644
No 34
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.05 E-value=3.1e-06 Score=58.51 Aligned_cols=34 Identities=29% Similarity=0.730 Sum_probs=21.7
Q ss_pred CceecccccC-CCceeecCCCCceecHHHHHHHHhcC
Q 039646 102 CAVCLCEFSE-HDNLRLLPSCSHAFHITCIDTWLLSN 137 (325)
Q Consensus 102 C~ICle~~~~-~~~~~~lp~C~H~FH~~CI~~Wl~~~ 137 (325)
|+||.+ |.. ...+++|+ |||.|+.+||.+++...
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 754 44568899 99999999999999853
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.96 E-value=1.5e-06 Score=66.22 Aligned_cols=51 Identities=29% Similarity=0.823 Sum_probs=24.2
Q ss_pred CCcCceecccccCCC-ce-eecC--CCCceecHHHHHHHHhc----C-------CCCCcccccccC
Q 039646 99 PFDCAVCLCEFSEHD-NL-RLLP--SCSHAFHITCIDTWLLS----N-------STCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~~~~-~~-~~lp--~C~H~FH~~CI~~Wl~~----~-------~tCPlCR~~l~~ 149 (325)
+.+|.||+..+...+ .+ ...+ +|++.||..||.+||+. + .+||.|+++|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 357999999876332 22 2332 69999999999999973 1 139999998753
No 36
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=7.5e-07 Score=85.98 Aligned_cols=64 Identities=28% Similarity=0.466 Sum_probs=51.3
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-CCCCCcccccccCCCCCCCCCCCCc
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSSSDNSLENPVSSF 161 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~~~~~~p~~~~ 161 (325)
.+..+..|+|||+-++. .+.++.|.|.||..||..-++. +++||.||+.+...-....+|.++.
T Consensus 39 ~~~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fda 103 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDA 103 (381)
T ss_pred HhhhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHH
Confidence 34567889999998876 4455569999999999998875 7789999999988776666776654
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=6.5e-06 Score=79.08 Aligned_cols=52 Identities=21% Similarity=0.615 Sum_probs=38.2
Q ss_pred CCcCceeccc-ccCCC-ceeecCCCCceecHHHHHHHHhc-CCCCCcccccccCCC
Q 039646 99 PFDCAVCLCE-FSEHD-NLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSSSD 151 (325)
Q Consensus 99 ~~~C~ICle~-~~~~~-~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~ 151 (325)
+..|++|... |...+ .+.+.+ |||.||..|++..+.. ...||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4579999985 33332 333445 9999999999996654 557999999887654
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.4e-06 Score=76.91 Aligned_cols=46 Identities=39% Similarity=0.879 Sum_probs=39.4
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccc
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRG 145 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 145 (325)
..+...|+||++.|... .++| |+|.||..||..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 34667899999999885 7888 9999999999999885556999993
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=6.4e-06 Score=79.82 Aligned_cols=47 Identities=28% Similarity=0.764 Sum_probs=40.6
Q ss_pred CCcCceecccccCCCceeecCCCCce-ecHHHHHHHHhcCCCCCcccccccC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHA-FHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
..+|.|||.+-.+ ..+|| |.|. .|..|.+....+++.||+||+++..
T Consensus 290 gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 5689999998655 88999 9995 9999999977788999999998754
No 40
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.2e-05 Score=65.16 Aligned_cols=28 Identities=43% Similarity=1.028 Sum_probs=25.7
Q ss_pred CCCceecHHHHHHHHhcCCCCCcccccc
Q 039646 120 SCSHAFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 120 ~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
.|.|.||..||.+||+.++.||+|.++-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 4999999999999999999999997753
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.78 E-value=1e-05 Score=80.29 Aligned_cols=50 Identities=36% Similarity=0.859 Sum_probs=39.3
Q ss_pred CCCCCcCceecccccCCC-ceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 96 LKEPFDCAVCLCEFSEHD-NLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
..+-.+|+|||+-+.... .++... |.|.||..|+..|. ..+||+||.-..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 446678999999985543 345555 99999999999994 478999998655
No 42
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.4e-05 Score=78.05 Aligned_cols=46 Identities=30% Similarity=0.874 Sum_probs=33.7
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhc---CCCCCcccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS---NSTCPLCRG 145 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~ 145 (325)
..|.||.+-+-....+.-+-.|||+||..|+..|+.. +.+||+|+-
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 3699995444333344434359999999999999985 457999993
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.54 E-value=1.6e-05 Score=83.34 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=40.5
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
..|++|+..+.++......+ |+|.||..||..|-+..++||+||..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 45888888876655555555 99999999999999999999999987643
No 44
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.51 E-value=3.4e-05 Score=73.31 Aligned_cols=56 Identities=29% Similarity=0.778 Sum_probs=45.8
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-----------------------CCCCCcccccccCCCCCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-----------------------NSTCPLCRGTLSSSDNSL 154 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----------------------~~tCPlCR~~l~~~~~~~ 154 (325)
...+|.|||.-|..++...+++ |-|.||..|+.++|.. ...||+||..|....+.+
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~sl 192 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENSL 192 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccce
Confidence 3467999999999999898998 9999999999877631 234999999997765554
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=6.5e-05 Score=73.44 Aligned_cols=53 Identities=30% Similarity=0.856 Sum_probs=39.6
Q ss_pred CCCCcCceecccccCCC----ceeecCCCCceecHHHHHHHHh--c-----CCCCCcccccccC
Q 039646 97 KEPFDCAVCLCEFSEHD----NLRLLPSCSHAFHITCIDTWLL--S-----NSTCPLCRGTLSS 149 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~----~~~~lp~C~H~FH~~CI~~Wl~--~-----~~tCPlCR~~l~~ 149 (325)
..+..|.|||+...... ...++|+|.|.||..||..|-. + ...||.||....-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34678999999864432 1235677999999999999984 3 4679999986543
No 46
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.42 E-value=4.1e-05 Score=57.16 Aligned_cols=48 Identities=29% Similarity=0.643 Sum_probs=23.4
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCCC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDN 152 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 152 (325)
..|++|.+.+.. ++.+..|.|+||..||..-+. ..||+|+.+.-..+.
T Consensus 8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDI 55 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS-
T ss_pred cCCcHHHHHhcC---CceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHH
Confidence 469999998766 444445999999999988554 349999987654443
No 47
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=8.9e-05 Score=73.85 Aligned_cols=51 Identities=33% Similarity=0.836 Sum_probs=43.6
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
....++.|.||+..+.. ++.+| |||.||..||++-+.....||+||..+..
T Consensus 80 ~~~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 34677899999988766 56778 99999999999988878889999999876
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.34 E-value=0.00013 Score=71.87 Aligned_cols=48 Identities=27% Similarity=0.848 Sum_probs=39.9
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhc--CCCCCcccccccCCCC
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS--NSTCPLCRGTLSSSDN 152 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~l~~~~~ 152 (325)
-|-||-+. +..+++-| |||..|..|+..|... .++||.||.+|.-.+.
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 49999876 55588888 9999999999999854 6789999999876543
No 49
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=9.8e-05 Score=70.28 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=38.4
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-CCCCCcccccccCC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSSS 150 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~ 150 (325)
..+|+||+... ..+..|+ |+|.||..||+--... ..+|++||.++.+.
T Consensus 7 ~~eC~IC~nt~---n~Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTG---NCPVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccC---CcCcccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 35799999874 4456777 9999999999976654 66799999998764
No 50
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=7.6e-05 Score=53.92 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=33.8
Q ss_pred CcCceecccccCCCceeecCCCCce-ecHHHHHHHHh-cCCCCCccccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHA-FHITCIDTWLL-SNSTCPLCRGTLS 148 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~-~~~tCPlCR~~l~ 148 (325)
.+|.||++.-.+ -++- .|||. .|.+|-.+.++ .+..||+||+++.
T Consensus 8 dECTICye~pvd---sVlY-tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVD---SVLY-TCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcch---HHHH-HcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 579999987433 2233 39996 78889777665 6889999999874
No 51
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0003 Score=69.38 Aligned_cols=48 Identities=33% Similarity=0.865 Sum_probs=36.1
Q ss_pred CCcCceecccccCCC--ceeecCCCCceecHHHHHHHHhc--CCCCCcccccc
Q 039646 99 PFDCAVCLCEFSEHD--NLRLLPSCSHAFHITCIDTWLLS--NSTCPLCRGTL 147 (325)
Q Consensus 99 ~~~C~ICle~~~~~~--~~~~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~l 147 (325)
...|+||++.+...- .+..+ .|+|.|-..||+.||-+ ...||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl-~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSL-QCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeee-cccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 357999999886443 33344 59999999999999963 23499997643
No 52
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00015 Score=76.20 Aligned_cols=52 Identities=27% Similarity=0.706 Sum_probs=40.3
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHh-cCCCCCcccccccCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-SNSTCPLCRGTLSSSD 151 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~~~ 151 (325)
.++-..|++|-.-+.+ .+++ +|+|+||..|+.+-+. ++..||.|.+.+-..+
T Consensus 640 yK~~LkCs~Cn~R~Kd---~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKD---AVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred HHhceeCCCccCchhh---HHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 3455789999976655 4444 4999999999999887 5778999988776543
No 53
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00082 Score=61.79 Aligned_cols=55 Identities=25% Similarity=0.581 Sum_probs=45.5
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc--------CCCCCcccccccCCCCC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS--------NSTCPLCRGTLSSSDNS 153 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCPlCR~~l~~~~~~ 153 (325)
+....|..|-..+..+|.+++. |-|.||..|+.+|-.. ...||.|..+|+++.+.
T Consensus 48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 3345799999999999998876 9999999999999764 33599999999986543
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.88 E-value=0.001 Score=48.67 Aligned_cols=42 Identities=21% Similarity=0.604 Sum_probs=26.7
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc--CCCCCc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS--NSTCPL 142 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCPl 142 (325)
-...|+|.+..|++ .++-. .|+|.|-...|..|+.. ...||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45679999999876 24444 49999999999999954 334998
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.86 E-value=0.00054 Score=68.36 Aligned_cols=53 Identities=26% Similarity=0.686 Sum_probs=43.1
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
..+...|++|+..+.+.-. .+. |||.||..|+..|+..+..||.|+..+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~--~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQ--TTT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCC--CCC-CCCcccccccchhhccCcCCcccccccchhh
Confidence 3566789999999877422 234 9999999999999999999999998876544
No 56
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00047 Score=60.42 Aligned_cols=38 Identities=29% Similarity=0.600 Sum_probs=30.5
Q ss_pred eeecccCCCCCCcCceecccccCCCceeecCCCCceecH
Q 039646 89 YYKDIVGLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHI 127 (325)
Q Consensus 89 ~~~~~~~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~ 127 (325)
.|.+..-.++..+|.||||+++.++.+..|| |-.+||+
T Consensus 167 sYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 167 SYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred ccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 3333333345678999999999999999999 9999996
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.55 E-value=0.00094 Score=60.35 Aligned_cols=47 Identities=21% Similarity=0.540 Sum_probs=40.1
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
-++.|.||-++|+. ++++. |||.||..|..+-++....|-+|.+...
T Consensus 195 IPF~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 195 IPFLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred Cceeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchhhc
Confidence 35789999999977 55665 9999999999999999999999987543
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.45 E-value=0.0015 Score=64.30 Aligned_cols=45 Identities=38% Similarity=0.900 Sum_probs=36.4
Q ss_pred CcCceecccccCC-CceeecCCCCceecHHHHHHHHhcC--CCCCcccc
Q 039646 100 FDCAVCLCEFSEH-DNLRLLPSCSHAFHITCIDTWLLSN--STCPLCRG 145 (325)
Q Consensus 100 ~~C~ICle~~~~~-~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~ 145 (325)
.-|-.|-+.+-.. +.+--|| |.|+||..|+.+.|.++ .+||.||+
T Consensus 366 L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 5699998887543 4566788 99999999999999865 46999994
No 59
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.18 E-value=0.0017 Score=55.30 Aligned_cols=36 Identities=17% Similarity=0.540 Sum_probs=30.4
Q ss_pred CCcCceecccccCCCceeecCCCC------ceecHHHHHHHHh
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCS------HAFHITCIDTWLL 135 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~------H~FH~~CI~~Wl~ 135 (325)
..+|+||++.+...+.++.++ |+ |.||.+|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHh
Confidence 468999999998866777777 76 8899999999943
No 60
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.0061 Score=56.83 Aligned_cols=53 Identities=15% Similarity=0.328 Sum_probs=47.1
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
.+.|+||.+.+.+...+..|.+|||+|+.+|+.+.+.....||+|-.++.+.+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 46799999999998888888779999999999999999999999988887654
No 61
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.03 E-value=0.0019 Score=62.32 Aligned_cols=54 Identities=22% Similarity=0.554 Sum_probs=43.2
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
+......|.+|-..|.+...+ .. |-|.||..||.+.|....+||.|...+-...
T Consensus 11 ~~n~~itC~LC~GYliDATTI--~e-CLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTI--TE-CLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred hcccceehhhccceeecchhH--HH-HHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 345566899999888775433 33 9999999999999999999999988776543
No 62
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.90 E-value=0.0047 Score=68.90 Aligned_cols=67 Identities=24% Similarity=0.500 Sum_probs=47.7
Q ss_pred HhhCCceeeeccc-CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc----------CCCCCcccccccC
Q 039646 82 IDALPMFYYKDIV-GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS----------NSTCPLCRGTLSS 149 (325)
Q Consensus 82 i~~Lp~~~~~~~~-~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~----------~~tCPlCR~~l~~ 149 (325)
-.-||-+..+... ....+..|.||..+-........|- |+|+||..|...-|.+ --+||+|+.++..
T Consensus 3468 E~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3468 EHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3445655544322 3345678999998876667777887 9999999999876653 1259999988754
No 63
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.82 E-value=0.0031 Score=64.25 Aligned_cols=51 Identities=31% Similarity=0.607 Sum_probs=39.4
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-----CCCCCcccccccCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-----NSTCPLCRGTLSSS 150 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~~l~~~ 150 (325)
.++...|-+|.++-++ ..... |.|.||..||.++... +-+||.|...+.-.
T Consensus 533 nk~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3456789999988544 45555 9999999999998753 56799998877543
No 64
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0055 Score=59.86 Aligned_cols=44 Identities=32% Similarity=0.674 Sum_probs=32.7
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
-+..|.||+++..+ ...+| |||.-| |..-- +....||+||..+.
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 45679999999766 67888 999866 65543 23445999998764
No 65
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.78 E-value=0.005 Score=43.21 Aligned_cols=40 Identities=30% Similarity=0.901 Sum_probs=26.9
Q ss_pred CceecccccCCCceeecCCCC-----ceecHHHHHHHHhc--CCCCCcc
Q 039646 102 CAVCLCEFSEHDNLRLLPSCS-----HAFHITCIDTWLLS--NSTCPLC 143 (325)
Q Consensus 102 C~ICle~~~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~--~~tCPlC 143 (325)
|-||++.-...+ ..+.| |. ...|..|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678998866555 44566 65 36899999999984 5569987
No 66
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.008 Score=56.83 Aligned_cols=49 Identities=29% Similarity=0.503 Sum_probs=36.4
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc--CCCCCccccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS--NSTCPLCRGTLS 148 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~l~ 148 (325)
..+.+|++|-+.-..+ ....+ |+|+||..||..-+.. ..+||.|-.+..
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4567899999875442 23444 9999999999986653 468999977654
No 67
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.0039 Score=59.45 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=39.9
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
++.|-||...|.. ++++. |+|.||..|...-++....|++|-+.+..
T Consensus 241 Pf~c~icr~~f~~---pVvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---PVVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred Ccccccccccccc---chhhc-CCceeehhhhccccccCCcceeccccccc
Confidence 4679999999977 45565 99999999999999999999999876643
No 68
>PHA02862 5L protein; Provisional
Probab=95.63 E-value=0.0089 Score=51.58 Aligned_cols=45 Identities=24% Similarity=0.564 Sum_probs=33.8
Q ss_pred CcCceecccccCCCceeecCCCC-----ceecHHHHHHHHhc--CCCCCcccccccC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCS-----HAFHITCIDTWLLS--NSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~--~~tCPlCR~~l~~ 149 (325)
..|=||+++-.+ . .-| |. ...|..|+.+|+.. +..||+|+.++.-
T Consensus 3 diCWIC~~~~~e--~--~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDE--R--NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCC--C--ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 469999998433 2 245 65 46999999999974 4569999998754
No 69
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.60 E-value=0.013 Score=55.30 Aligned_cols=62 Identities=23% Similarity=0.431 Sum_probs=47.5
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCCCCCCCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNSLENPV 158 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~~~~p~ 158 (325)
....+.|||+..+|......+.+.+|||+|...+|..-- ....||+|-.++...+.-.-+|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp~ 171 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNPP 171 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecCC
Confidence 345678999999997666666665599999999999962 35679999999887655444443
No 70
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.0065 Score=60.31 Aligned_cols=47 Identities=30% Similarity=0.735 Sum_probs=38.4
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc--------CCCCCcccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS--------NSTCPLCRG 145 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCPlCR~ 145 (325)
.-++|.||+++.........+| |+|+||..|+..++.. .-.||-|.-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3478999999988778889999 9999999999999863 224877654
No 71
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.54 E-value=0.0095 Score=42.14 Aligned_cols=45 Identities=27% Similarity=0.583 Sum_probs=21.8
Q ss_pred CceecccccCCC-ceeecCCCCceecHHHHHHHHh-cCCCCCcccccc
Q 039646 102 CAVCLCEFSEHD-NLRLLPSCSHAFHITCIDTWLL-SNSTCPLCRGTL 147 (325)
Q Consensus 102 C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l 147 (325)
|++|.+++...+ ...-.+ |++.++..|...-+. ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999983322 333444 889999999888775 467799999864
No 72
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.52 E-value=0.0061 Score=48.84 Aligned_cols=34 Identities=29% Similarity=0.773 Sum_probs=27.3
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHH
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCID 131 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~ 131 (325)
..+...|++|-..+.. ....+.| |||+||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 3456679999999876 4566778 99999999975
No 73
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.08 E-value=0.018 Score=50.45 Aligned_cols=49 Identities=22% Similarity=0.602 Sum_probs=35.4
Q ss_pred CCCCcCceecccccCCCceeecCCCC--c---eecHHHHHHHHhc--CCCCCcccccccCC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCS--H---AFHITCIDTWLLS--NSTCPLCRGTLSSS 150 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~--H---~FH~~CI~~Wl~~--~~tCPlCR~~l~~~ 150 (325)
..+..|-||.++-. +. ..| |. . ..|.+|+.+|+.. ...|++|++++.-.
T Consensus 6 ~~~~~CRIC~~~~~--~~--~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV--TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCC--Cc--cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 34568999998843 22 235 54 3 5799999999985 44599999987543
No 74
>PHA03096 p28-like protein; Provisional
Probab=95.00 E-value=0.011 Score=56.61 Aligned_cols=46 Identities=28% Similarity=0.595 Sum_probs=32.7
Q ss_pred CcCceecccccCC----CceeecCCCCceecHHHHHHHHhc---CCCCCcccc
Q 039646 100 FDCAVCLCEFSEH----DNLRLLPSCSHAFHITCIDTWLLS---NSTCPLCRG 145 (325)
Q Consensus 100 ~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~ 145 (325)
-.|.|||+..... ..-.+|+.|.|.||..||..|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 4699999976532 233467789999999999999864 233555543
No 75
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.97 E-value=0.012 Score=62.90 Aligned_cols=49 Identities=29% Similarity=0.802 Sum_probs=38.2
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcC-------CCCCcccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN-------STCPLCRG 145 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-------~tCPlCR~ 145 (325)
....+|.||++.+...+.+--...|-|+||..||..|-++. -.||.|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 45678999999987766554444589999999999998741 13999984
No 76
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.0056 Score=58.34 Aligned_cols=42 Identities=26% Similarity=0.615 Sum_probs=32.2
Q ss_pred CCcCceecccccCCCceeecCCCCce-ecHHHHHHHHhcCCCCCccccccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHA-FHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
..-|+|||+.-. ....|+ |||. -|..|-... +.||+||+.+.
T Consensus 300 ~~LC~ICmDaP~---DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence 456999998844 478898 9994 678886553 48999998664
No 77
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.018 Score=56.26 Aligned_cols=49 Identities=29% Similarity=0.583 Sum_probs=41.2
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
.++..|+||... +-..+..| |+|.=|..||.+.+...+.|=.|+.++.+
T Consensus 420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 466789999865 33356778 99999999999999999999999998875
No 78
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.43 E-value=0.015 Score=54.02 Aligned_cols=51 Identities=25% Similarity=0.578 Sum_probs=35.7
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCCCCCC
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNSLE 155 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~~~ 155 (325)
.|-.|..-- .++...++. |.|+||..|...- ....||+|++.+..-....+
T Consensus 5 hCn~C~~~~-~~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 5 HCNKCFRFP-SQDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EeccccccC-CCCceeeee-chhhhhhhhcccC--Cccccccccceeeeeecccc
Confidence 477776443 367777776 9999999997653 22389999999765544443
No 79
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.15 Score=49.46 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=36.8
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
.+...|+||+..-.++. .+..-|-+||..||-.++..+..||+-..+.
T Consensus 298 ~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 34567999998876632 2222699999999999999999999865543
No 80
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.92 E-value=0.035 Score=38.28 Aligned_cols=41 Identities=22% Similarity=0.594 Sum_probs=22.8
Q ss_pred CceecccccCCCceeecCCCCceecHHHHHHHHhcCC--CCCcc
Q 039646 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS--TCPLC 143 (325)
Q Consensus 102 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCPlC 143 (325)
|.+|.+....+...... .|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777766555433322 3888999999999998655 69988
No 81
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.88 E-value=0.053 Score=53.00 Aligned_cols=60 Identities=25% Similarity=0.504 Sum_probs=41.8
Q ss_pred hCCceeeecccCC-CCCCcCceecccccCCCceeecCCCCceecHHHHHHH--HhcCCCCCcccccc
Q 039646 84 ALPMFYYKDIVGL-KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTW--LLSNSTCPLCRGTL 147 (325)
Q Consensus 84 ~Lp~~~~~~~~~~-~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W--l~~~~tCPlCR~~l 147 (325)
.-|..+..+..+. .+...|.||-+.+.- ..++| |+|..|..|..+. |.....||+||..-
T Consensus 45 aEPnlttsSaddtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 45 AEPNLTTSSADDTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cCCccccccccccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3444444443333 345569999987544 56888 9999999998653 45688899999854
No 82
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.048 Score=51.92 Aligned_cols=47 Identities=32% Similarity=0.723 Sum_probs=38.1
Q ss_pred CcCceecccccCCC---ceeecCCCCceecHHHHHHHHhc-CCCCCcccccc
Q 039646 100 FDCAVCLCEFSEHD---NLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTL 147 (325)
Q Consensus 100 ~~C~ICle~~~~~~---~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l 147 (325)
..|-||-++|...+ .++.|. |||.|+..|+.+.+.. ...||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 46999999998764 356666 9999999999987765 34599999986
No 83
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.32 E-value=0.043 Score=52.64 Aligned_cols=43 Identities=37% Similarity=0.839 Sum_probs=34.5
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHh-cCCCCCcccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-SNSTCPLCRG 145 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~ 145 (325)
..|+.|...+.. ...+|.|+|.||.+||..-|. ....||.|..
T Consensus 275 LkCplc~~Llrn---p~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN---PMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC---cccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 679999988766 334566999999999997766 5667999965
No 84
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.0067 Score=59.82 Aligned_cols=50 Identities=22% Similarity=0.606 Sum_probs=42.7
Q ss_pred CcCceecccccCC-CceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 100 FDCAVCLCEFSEH-DNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 100 ~~C~ICle~~~~~-~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
..|+||.+.+... +.+..+- |||++|..||.+||.....||.|+.++...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 4699999988765 5666666 999999999999999988899999988654
No 85
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.96 E-value=0.047 Score=58.59 Aligned_cols=41 Identities=22% Similarity=0.655 Sum_probs=31.1
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGT 146 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~ 146 (325)
..|..|--.+..+ .+.-. |+|.||.+|+. .....||-|+.+
T Consensus 841 skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccchh
Confidence 4699998777553 33333 99999999988 455679999873
No 86
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.86 E-value=0.094 Score=38.01 Aligned_cols=40 Identities=25% Similarity=0.671 Sum_probs=32.8
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPL 142 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPl 142 (325)
...|.+|-+.|.+++.+++.|.|+-.+|+.|..+ ...|-+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 3569999999998899999999999999999544 444544
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.076 Score=47.48 Aligned_cols=31 Identities=29% Similarity=0.938 Sum_probs=24.9
Q ss_pred CCCceecHHHHHHHHhc----C-------CCCCcccccccCC
Q 039646 120 SCSHAFHITCIDTWLLS----N-------STCPLCRGTLSSS 150 (325)
Q Consensus 120 ~C~H~FH~~CI~~Wl~~----~-------~tCPlCR~~l~~~ 150 (325)
.||.-||.-|+..||+. . ..||.|-.++..+
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 39999999999999974 1 2499998887654
No 88
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.48 E-value=0.05 Score=57.98 Aligned_cols=47 Identities=30% Similarity=0.761 Sum_probs=37.4
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhc--CCCCCcccccccCCC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS--NSTCPLCRGTLSSSD 151 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~l~~~~ 151 (325)
..|.||++ .+.+...+ |+|.||..|+..-+.. ...||+||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999998 44566777 9999999999988764 235999998876543
No 89
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.30 E-value=0.072 Score=37.56 Aligned_cols=44 Identities=27% Similarity=0.707 Sum_probs=24.9
Q ss_pred cCceecccccCCCceeecCCCC-ceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCS-HAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
.|--|+-.... ++ . |. |..|..|+...|.....||+|..+++..
T Consensus 4 nCKsCWf~~k~---Li--~-C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFANKG---LI--K-CSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S--SS---EE--E--SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcCCC---ee--e-ecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 46667644322 32 2 75 9999999999999999999999988653
No 90
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.30 E-value=0.093 Score=51.86 Aligned_cols=29 Identities=28% Similarity=0.940 Sum_probs=22.4
Q ss_pred CCceecHHHHHHHHhc-------------CCCCCcccccccC
Q 039646 121 CSHAFHITCIDTWLLS-------------NSTCPLCRGTLSS 149 (325)
Q Consensus 121 C~H~FH~~CI~~Wl~~-------------~~tCPlCR~~l~~ 149 (325)
|.-.+|.+|+-+|+.. +-+||+||+.+.-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4567899999999853 3359999998764
No 91
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.63 E-value=0.18 Score=44.35 Aligned_cols=33 Identities=24% Similarity=0.565 Sum_probs=21.6
Q ss_pred CCcCceecccccCCCceeecC-----------CCCc-eecHHHHHHHH
Q 039646 99 PFDCAVCLCEFSEHDNLRLLP-----------SCSH-AFHITCIDTWL 134 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp-----------~C~H-~FH~~CI~~Wl 134 (325)
+..|+|||+--.+. ++|- .|+- .-|..|++++-
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHH
Confidence 56799999875442 2332 1442 36899999875
No 92
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.58 E-value=0.12 Score=37.52 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=31.4
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
..|..|... +..-.++| |+|+.+..|..-+ +-+-||.|.+++...
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 346666544 33456788 9999999996553 456699999887653
No 93
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.73 Score=45.89 Aligned_cols=48 Identities=23% Similarity=0.483 Sum_probs=39.9
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC---CCCccc
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS---TCPLCR 144 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---tCPlCR 144 (325)
....+.|||=.+.=.+...+..|. |||+...+-|.+..+... .||.|=
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred ccceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 456789999888877888888998 999999999999776543 499993
No 94
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.57 E-value=0.12 Score=49.22 Aligned_cols=46 Identities=26% Similarity=0.683 Sum_probs=37.4
Q ss_pred CCcCceecccccCCC-ceeecCCCCceecHHHHHHHHhcCCCCCcccc
Q 039646 99 PFDCAVCLCEFSEHD-NLRLLPSCSHAFHITCIDTWLLSNSTCPLCRG 145 (325)
Q Consensus 99 ~~~C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 145 (325)
...|+||.+.+.... .+..++ |+|.-|..|+......+-+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 345999999765544 345666 9999999999998888888999988
No 95
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.19 E-value=0.17 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.949 Sum_probs=21.2
Q ss_pred CCCceecHHHHHHHHhcCCCCCc
Q 039646 120 SCSHAFHITCIDTWLLSNSTCPL 142 (325)
Q Consensus 120 ~C~H~FH~~CI~~Wl~~~~tCPl 142 (325)
.|+|+.|..|...|+.....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 39999999999999999999984
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.03 E-value=0.19 Score=49.05 Aligned_cols=54 Identities=22% Similarity=0.474 Sum_probs=38.1
Q ss_pred CCCcCceecccccCCCc-eeecCCCCceecHHHHHHHHh-cCCCCCcccccccCCCC
Q 039646 98 EPFDCAVCLCEFSEHDN-LRLLPSCSHAFHITCIDTWLL-SNSTCPLCRGTLSSSDN 152 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~~~~ 152 (325)
++..|+.|++++...|+ ..-.| ||...|..|...--+ .+..||-||....+...
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 34459999999876654 34456 998888888655333 25669999998776543
No 97
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=0.14 Score=49.50 Aligned_cols=42 Identities=31% Similarity=0.764 Sum_probs=29.2
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
.|--|--.+.. .-|+.| |.|+||.+|... ...+.||+|-..+
T Consensus 92 fCd~Cd~PI~I--YGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAI--YGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCccee--eecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 36667544432 346788 999999999654 3356799997665
No 98
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=0.2 Score=45.88 Aligned_cols=40 Identities=33% Similarity=0.760 Sum_probs=30.2
Q ss_pred CceecccccCCCceeecCCCCc-eecHHHHHHHHhcCCCCCcccccccC
Q 039646 102 CAVCLCEFSEHDNLRLLPSCSH-AFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 102 C~ICle~~~~~~~~~~lp~C~H-~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
|-.|-+. ...+.++| |.| .+|..|-.. -.+||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 8888765 55688999 998 589999554 3559999876543
No 99
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=89.16 E-value=0.53 Score=39.72 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039646 18 LLLILVIVAVVFFIFGLVHLLIRYLKK 44 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~ll~r~l~r 44 (325)
++||+.+++.++++++++.+++|.++|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555554444444444433333
No 100
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.15 E-value=0.26 Score=53.35 Aligned_cols=36 Identities=22% Similarity=0.546 Sum_probs=27.6
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHH
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWL 134 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl 134 (325)
..+..|.+|...+... .-.+-| |||.||..||.+-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 4456799999887664 344566 99999999998654
No 101
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.74 E-value=0.19 Score=56.28 Aligned_cols=48 Identities=27% Similarity=0.746 Sum_probs=38.6
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
.+...|.||++.+.....+ .. |+|.+|..|+..|+..+..||.|....
T Consensus 1151 ~~~~~c~ic~dil~~~~~I--~~-cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGI--AG-CGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcCCe--ee-echhHhhhHHHHHHHHhccCcchhhhh
Confidence 3456899999998753333 22 999999999999999999999998543
No 102
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=86.34 E-value=1 Score=45.44 Aligned_cols=35 Identities=34% Similarity=0.726 Sum_probs=28.7
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS 136 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~ 136 (325)
++..|+||..-|++ +++|| |+|..|..|...-+.+
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhhccc
Confidence 45679999988876 67888 9999999998865543
No 103
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.85 E-value=0.6 Score=44.75 Aligned_cols=50 Identities=22% Similarity=0.556 Sum_probs=35.9
Q ss_pred cCceeccc-ccCCCce-eecCCCCceecHHHHHHHHhcCC-CCCcccccccCCC
Q 039646 101 DCAVCLCE-FSEHDNL-RLLPSCSHAFHITCIDTWLLSNS-TCPLCRGTLSSSD 151 (325)
Q Consensus 101 ~C~ICle~-~~~~~~~-~~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l~~~~ 151 (325)
.|++|-.+ |..++.. .+-+ |+|..|..|++..+..+. .||.|-..+....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 48999864 4444433 3335 999999999999887654 5999987665443
No 104
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.32 E-value=0.24 Score=51.96 Aligned_cols=42 Identities=26% Similarity=0.590 Sum_probs=31.3
Q ss_pred CcCceecccccCCCc-eeecCCCCceecHHHHHHHHhcCCCCCcccc
Q 039646 100 FDCAVCLCEFSEHDN-LRLLPSCSHAFHITCIDTWLLSNSTCPLCRG 145 (325)
Q Consensus 100 ~~C~ICle~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 145 (325)
..|.||+..|..... ++-+- |||..|..|+..- .+.+|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~-cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQ-CGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCccccc-ccchHHHHHHHhH--hhccCC-CCc
Confidence 469999988866543 44454 9999999999874 467788 554
No 105
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=84.79 E-value=0.97 Score=47.38 Aligned_cols=44 Identities=27% Similarity=0.747 Sum_probs=27.8
Q ss_pred CCCcCceeccc-----ccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccc
Q 039646 98 EPFDCAVCLCE-----FSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRG 145 (325)
Q Consensus 98 ~~~~C~ICle~-----~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 145 (325)
..+.|.+|... |+.....+.. .|+++||..|+.. ....||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~-~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCS-TCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHH-HHHHHHHHHHHhc---cCCCCCchHH
Confidence 34678888432 3322233344 4999999999544 4555999943
No 106
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=84.78 E-value=0.71 Score=44.71 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=34.1
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
.+-.+|+||.+.+... +...+ =||+.|..|-. ...+.||.||.++..
T Consensus 46 ~~lleCPvC~~~l~~P--i~QC~-nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP--IFQCD-NGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc--ceecC-CCcEehhhhhh---hhcccCCcccccccc
Confidence 3456899999998774 22222 26999999965 346779999998863
No 107
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=84.49 E-value=0.37 Score=45.11 Aligned_cols=50 Identities=28% Similarity=0.685 Sum_probs=36.5
Q ss_pred CCCcCceeccc-ccCCC-ceeecCCCCceecHHHHHHHHhcCC-CCC--cccccc
Q 039646 98 EPFDCAVCLCE-FSEHD-NLRLLPSCSHAFHITCIDTWLLSNS-TCP--LCRGTL 147 (325)
Q Consensus 98 ~~~~C~ICle~-~~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP--lCR~~l 147 (325)
.+..|+||..+ |..++ .+.+-|.|-|..|..|+++-+...+ .|| -|-+-|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 45679999976 33333 3445566999999999999998755 599 786544
No 108
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=84.19 E-value=1.3 Score=37.44 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 039646 18 LLLILVIVAVVFFIFGLVHLLIRYLKKRPS 47 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~ll~r~l~rr~~ 47 (325)
-.++.+|+++++.|+++++|+..+++|++.
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378888888888888777666655555543
No 109
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.78 E-value=0.51 Score=44.54 Aligned_cols=52 Identities=19% Similarity=0.553 Sum_probs=35.3
Q ss_pred CCCCcCceecccccCCCce-eecCCCC-----ceecHHHHHHHHhcC--------CCCCcccccccC
Q 039646 97 KEPFDCAVCLCEFSEHDNL-RLLPSCS-----HAFHITCIDTWLLSN--------STCPLCRGTLSS 149 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~-~~lp~C~-----H~FH~~CI~~Wl~~~--------~tCPlCR~~l~~ 149 (325)
..+..|=||+..=+++... -+-| |. |-.|..|+..|+..+ -+||.|+.+..-
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 3456799999764443221 1334 53 789999999999642 249999998654
No 110
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.58 E-value=0.82 Score=47.60 Aligned_cols=47 Identities=36% Similarity=0.862 Sum_probs=38.5
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCCCC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNS 153 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~ 153 (325)
...|.||+.+. ..+..+ |. |..|+..|+..+..||+|+..+......
T Consensus 479 ~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFL 525 (543)
T ss_pred cCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccccc
Confidence 46799999987 455666 88 9999999999999999999887765443
No 111
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.19 E-value=0.67 Score=43.91 Aligned_cols=51 Identities=29% Similarity=0.687 Sum_probs=37.0
Q ss_pred CCcCceecccccCCCc-eeecCCCC-----ceecHHHHHHHHh--cCCCCCcccccccCC
Q 039646 99 PFDCAVCLCEFSEHDN-LRLLPSCS-----HAFHITCIDTWLL--SNSTCPLCRGTLSSS 150 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~-~~~lp~C~-----H~FH~~CI~~Wl~--~~~tCPlCR~~l~~~ 150 (325)
...|-||+++...... ....| |. +..|..|+..|+. ....|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4679999997654322 34556 65 5689999999998 455699998866554
No 112
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=81.24 E-value=1.2 Score=38.15 Aligned_cols=53 Identities=21% Similarity=0.516 Sum_probs=37.0
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHh---cCCCCCcccccccCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL---SNSTCPLCRGTLSSS 150 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~~l~~~ 150 (325)
.-.+|-||.|.-.+..-+.--.-||-..|..|-...++ .++.||.|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 34679999988654332221124899999998877555 477899999988654
No 113
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.84 E-value=1.1 Score=48.50 Aligned_cols=50 Identities=24% Similarity=0.626 Sum_probs=36.8
Q ss_pred CCCcCceecccccCCCceeecCCCCc-----eecHHHHHHHHhcC--CCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSH-----AFHITCIDTWLLSN--STCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H-----~FH~~CI~~Wl~~~--~tCPlCR~~l~~ 149 (325)
+...|-||..+=..++.+ .-| |.. ..|.+|+.+|+.-. ..|-+|+.++.=
T Consensus 11 d~~~CRICr~e~~~d~pL-fhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred cchhceeecCCCCCCCcC-ccc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 346799999886665554 445 653 58999999999853 349999987743
No 114
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.80 E-value=0.81 Score=43.99 Aligned_cols=32 Identities=22% Similarity=0.686 Sum_probs=24.6
Q ss_pred CCceecHHHHHHHHh-------------cCCCCCcccccccCCCC
Q 039646 121 CSHAFHITCIDTWLL-------------SNSTCPLCRGTLSSSDN 152 (325)
Q Consensus 121 C~H~FH~~CI~~Wl~-------------~~~tCPlCR~~l~~~~~ 152 (325)
|.-.+|.+|+.+|+. .+-+||+||+.+.-.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 567789999999874 24579999998876543
No 115
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=79.77 E-value=4.2 Score=27.39 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 21 ILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 21 Ii~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
|++.+++.+.++.+..++.-++.|+
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333333344444444444444444
No 116
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.27 E-value=0.82 Score=45.71 Aligned_cols=38 Identities=24% Similarity=0.618 Sum_probs=27.6
Q ss_pred CCCcCceecccc-cCCCceeecCCCCceecHHHHHHHHhc
Q 039646 98 EPFDCAVCLCEF-SEHDNLRLLPSCSHAFHITCIDTWLLS 136 (325)
Q Consensus 98 ~~~~C~ICle~~-~~~~~~~~lp~C~H~FH~~CI~~Wl~~ 136 (325)
....|.||+.++ ...+....+ .|+|.||.+|+.+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 356799999444 333444444 49999999999998874
No 117
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=77.55 E-value=0.66 Score=49.31 Aligned_cols=48 Identities=29% Similarity=0.759 Sum_probs=36.6
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC---CCCcccccccCC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS---TCPLCRGTLSSS 150 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---tCPlCR~~l~~~ 150 (325)
..+|+||+..+... ..+. |.|.|+..|+..-|...+ .||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p---~~~k-c~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLK-CDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc---chhh-hhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 46799999988764 3454 999999999987665443 599999766543
No 118
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=77.45 E-value=1.3 Score=47.82 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=37.5
Q ss_pred CCCcCceecccccCCC---ceeecCCCCceecHHHHHHHHhc------CCCCCcccccccCC
Q 039646 98 EPFDCAVCLCEFSEHD---NLRLLPSCSHAFHITCIDTWLLS------NSTCPLCRGTLSSS 150 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~---~~~~lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~l~~~ 150 (325)
+...|.||.-++..++ .+..+.+|+|.||..||..|+.+ +-.|+.|.+.|...
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 3456888887777632 22223359999999999999864 34589998877654
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.58 E-value=2.5 Score=45.45 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=31.8
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPL 142 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPl 142 (325)
..|.+|-..+.. .....+.|+|.=|..|+..|+..+..||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 468888766543 23345569999999999999999888877
No 120
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.10 E-value=3.6 Score=38.92 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=43.4
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCCCCCCCCCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNSLENPVS 159 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~~~~p~~ 159 (325)
..+.|+|=--+|...-....+..|||+|-..-+.+. ...+|++|.+.+...+.-.-||+.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlNg~~ 169 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLNGTE 169 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeCCCH
Confidence 357799987777655444455559999998887764 367799999998877765555543
No 121
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=74.41 E-value=9.4 Score=29.54 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039646 20 LILVIVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 20 iIi~IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
++++.++++++++..+.++..|..|++
T Consensus 5 fl~~plivf~ifVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPIWLILHYRSKWK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444444445556666667776664
No 122
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=70.08 E-value=5.5 Score=38.97 Aligned_cols=50 Identities=24% Similarity=0.591 Sum_probs=37.0
Q ss_pred CCcCceecccccCCCc-eeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 99 PFDCAVCLCEFSEHDN-LRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
...|+||.+.....+. ..-.| |+|..|..|+..-...+..||.||++...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCcccc
Confidence 3679999998743332 23344 88988999988888888999999965443
No 124
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=69.88 E-value=2.1 Score=39.45 Aligned_cols=43 Identities=30% Similarity=0.787 Sum_probs=34.0
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRG 145 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 145 (325)
..|.+|.+-.-.+ ++.-. |+-.+|..|+.+++++...||.|..
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~-c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGS-CNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhhee--eccCc-ccchhhhHHHHHHhcccCcCCchhc
Confidence 4699999875443 33333 8888999999999999999999943
No 125
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=69.86 E-value=4.2 Score=25.76 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=25.0
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
.|+.|.+.+...+..... =+..||..| ..|..|...|
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcC
Confidence 378888887665333332 367899887 5688887765
No 126
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=68.67 E-value=14 Score=28.56 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhCCC
Q 039646 28 VFFIFGLVHLLIRYLKKRPS 47 (325)
Q Consensus 28 v~~ii~ll~ll~r~l~rr~~ 47 (325)
+++++..+.++..|..+++.
T Consensus 13 f~ifVap~wl~lHY~~k~~~ 32 (75)
T TIGR02976 13 FVIFVAPLWLILHYRSKRKT 32 (75)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 34444566677777766654
No 127
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=66.86 E-value=2.7 Score=39.94 Aligned_cols=48 Identities=35% Similarity=0.722 Sum_probs=34.2
Q ss_pred CcCceecccccCCCceeec---CCCCceecHHHHHHHHhc---------CCCCCcccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLL---PSCSHAFHITCIDTWLLS---------NSTCPLCRGTL 147 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~l---p~C~H~FH~~CI~~Wl~~---------~~tCPlCR~~l 147 (325)
.+|-+|.+++...+..+.+ |.|+-.+|..|+..-+.. ...||.|++-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 4799999999544444332 358889999999984432 34599999844
No 128
>PHA02650 hypothetical protein; Provisional
Probab=66.81 E-value=15 Score=28.75 Aligned_cols=11 Identities=0% Similarity=0.177 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 039646 30 FIFGLVHLLIR 40 (325)
Q Consensus 30 ~ii~ll~ll~r 40 (325)
++++++.++.+
T Consensus 61 i~~l~~flYLK 71 (81)
T PHA02650 61 IVALFSFFVFK 71 (81)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 129
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=66.58 E-value=12 Score=35.03 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=17.3
Q ss_pred CCCCCCchhHhhHHHHHHHHHHHHHHHHHHHHH
Q 039646 8 SSATSRISPVLLLILVIVAVVFFIFGLVHLLIR 40 (325)
Q Consensus 8 ~ss~~~isp~iliIi~IL~vv~~ii~ll~ll~r 40 (325)
+|.+..|.|++|.+|+|.+.+|.+++|..++++
T Consensus 184 pS~S~vilpvvIaliVitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 184 PSYSSVILPVVIALIVITLSVFTLVGLYRMCWK 216 (259)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555555555555555555555544
No 130
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=65.64 E-value=4.4 Score=36.84 Aligned_cols=41 Identities=32% Similarity=0.839 Sum_probs=29.6
Q ss_pred CCcCceeccc-----ccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccc
Q 039646 99 PFDCAVCLCE-----FSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRG 145 (325)
Q Consensus 99 ~~~C~ICle~-----~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 145 (325)
.+.|.+|-++ |+. +.+...+.|+-+||..|.. ...||-|-.
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4789999853 333 3455666799999999955 267999953
No 131
>PF15102 TMEM154: TMEM154 protein family
Probab=64.34 E-value=3.3 Score=36.02 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=6.4
Q ss_pred cHHHHHHHHhc
Q 039646 126 HITCIDTWLLS 136 (325)
Q Consensus 126 H~~CI~~Wl~~ 136 (325)
-.+=+++|+..
T Consensus 126 Emeeldkwm~s 136 (146)
T PF15102_consen 126 EMEELDKWMNS 136 (146)
T ss_pred hHHHHHhHHHh
Confidence 34456777653
No 132
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=64.31 E-value=13 Score=30.36 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=23.3
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 15 SPVLLLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 15 sp~iliIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
...|-+++.++++++++++||.|.++|-..+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~ 44 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWY 44 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6777788888888888888888777765444
No 133
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=63.93 E-value=4.9 Score=28.83 Aligned_cols=43 Identities=26% Similarity=0.502 Sum_probs=20.5
Q ss_pred CceecccccCCC------ceeecCCCCceecHHHHHHHHhcCCCCCccc
Q 039646 102 CAVCLCEFSEHD------NLRLLPSCSHAFHITCIDTWLLSNSTCPLCR 144 (325)
Q Consensus 102 C~ICle~~~~~~------~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR 144 (325)
|.-|+..|.... .....|.|++.|+.+|=.--=..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 455666665532 3445677999999999332112334699883
No 134
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=63.37 E-value=32 Score=28.71 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=18.3
Q ss_pred cCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 118 LPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 118 lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
.|.|+|. .+-+-+...|+.|++++.-++
T Consensus 72 CP~C~K~------TKmLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 72 CPNCGKQ------TKMLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred CCCCCCh------HhhhchhhccCcCCCcCccCc
Confidence 3456663 233555677999999987643
No 135
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.31 E-value=2.6 Score=45.51 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=31.5
Q ss_pred CCcCceecccccCC----CceeecCCCCceecHHHHHHHHhcCCCCCcc
Q 039646 99 PFDCAVCLCEFSEH----DNLRLLPSCSHAFHITCIDTWLLSNSTCPLC 143 (325)
Q Consensus 99 ~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlC 143 (325)
+..|.-|.+..... +.+.++. |+|+||..|+.--..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 44799999876522 3566776 999999999987766555 5555
No 136
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=63.14 E-value=6.9 Score=27.63 Aligned_cols=43 Identities=21% Similarity=0.541 Sum_probs=18.6
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhc---CC--CCCccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS---NS--TCPLCRGT 146 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~---~~--tCPlCR~~ 146 (325)
..|+|....+.. .+|-.. |.|.-|- =+..||.. .. .||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCF-DLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--E-EHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceE-CHHHHHHHhhccCCeECcCCcCc
Confidence 358888877655 355554 9997331 23445543 22 49999763
No 137
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.53 E-value=8.7 Score=32.01 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=33.4
Q ss_pred CCcCceecccccCCC----------ceeecCCCCceecHHHHHHHHhcCCCCCccc
Q 039646 99 PFDCAVCLCEFSEHD----------NLRLLPSCSHAFHITCIDTWLLSNSTCPLCR 144 (325)
Q Consensus 99 ~~~C~ICle~~~~~~----------~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR 144 (325)
...|--|+..|.... .....++|++.||.+|=.-+-..-.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 346999999886421 1223557999999999777766667799995
No 138
>PRK09458 pspB phage shock protein B; Provisional
Probab=62.53 E-value=15 Score=28.40 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 039646 19 LLILVIVAVVFFIFGLVHLLIRYLKKRPS 47 (325)
Q Consensus 19 liIi~IL~vv~~ii~ll~ll~r~l~rr~~ 47 (325)
+++++.+.++++++..+.+++.|..|++.
T Consensus 4 ~fl~~PliiF~ifVaPiWL~LHY~sk~~~ 32 (75)
T PRK09458 4 LFLAIPLTIFVLFVAPIWLWLHYRSKRQG 32 (75)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhhcccccC
Confidence 34444444444555667777777776653
No 139
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.16 E-value=6.3 Score=38.47 Aligned_cols=46 Identities=20% Similarity=0.434 Sum_probs=35.9
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcC---CCCCcc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN---STCPLC 143 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~---~tCPlC 143 (325)
..-+.|+|--+.-.+...+..|. |||+.-.+-++..-+.. ..||.|
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred cceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 45578999877777777788887 99999999988865542 239999
No 140
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=59.60 E-value=8.6 Score=30.75 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=22.4
Q ss_pred CCCCCCCCchhHhhHHHHHHHHHHHHHHHHHHHHH
Q 039646 6 TPSSATSRISPVLLLILVIVAVVFFIFGLVHLLIR 40 (325)
Q Consensus 6 ~~~ss~~~isp~iliIi~IL~vv~~ii~ll~ll~r 40 (325)
.+++|...++....++|++|+.+..+.++..+++|
T Consensus 26 ~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 26 APSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred CCCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 45566777887777776666666666555554443
No 141
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=59.41 E-value=6.3 Score=26.04 Aligned_cols=26 Identities=31% Similarity=0.713 Sum_probs=16.7
Q ss_pred cCceecccccCCCc-------eeecCCCCceec
Q 039646 101 DCAVCLCEFSEHDN-------LRLLPSCSHAFH 126 (325)
Q Consensus 101 ~C~ICle~~~~~~~-------~~~lp~C~H~FH 126 (325)
.|+-|...|..++. ....+.|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888887765543 234445888775
No 142
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=58.39 E-value=16 Score=26.71 Aligned_cols=45 Identities=31% Similarity=0.750 Sum_probs=33.2
Q ss_pred cCceecccccCCC-ceeecCCCC--ceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 101 DCAVCLCEFSEHD-NLRLLPSCS--HAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 101 ~C~ICle~~~~~~-~~~~lp~C~--H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
.|-.|-.++..+. ..++ |. ..||..|.+.-| +..||.|-..+...
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 4777877776655 3333 54 479999999876 68899998877654
No 143
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.30 E-value=5.5 Score=40.44 Aligned_cols=37 Identities=24% Similarity=0.609 Sum_probs=30.0
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS 136 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~ 136 (325)
.....|-||.+.+.. .+..+. |+|.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 455789999998865 455666 9999999999998864
No 144
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.80 E-value=9.8 Score=35.99 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=28.2
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHh
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL 135 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~ 135 (325)
+.-..|..||..+.+ ++++| =||+|+.+||.+++.
T Consensus 41 K~FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRD---PVITP-DGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeecccccC---CccCC-CCeeeeHHHHHHHHH
Confidence 444579999999876 56777 899999999998864
No 145
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=57.57 E-value=5 Score=24.68 Aligned_cols=23 Identities=30% Similarity=0.752 Sum_probs=12.1
Q ss_pred cCceecccccCCCceeecCCCCcee
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAF 125 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~F 125 (325)
.|+-|...+.. ..+..|.|||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 36666665532 233445566665
No 146
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=57.11 E-value=27 Score=32.27 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=13.8
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHH
Q 039646 15 SPVLLLILVIVAVVFFIFGLVHLL 38 (325)
Q Consensus 15 sp~iliIi~IL~vv~~ii~ll~ll 38 (325)
.-.++|.++|++++|+|..+++|-
T Consensus 127 K~amLIClIIIAVLfLICT~LfLS 150 (227)
T PF05399_consen 127 KMAMLICLIIIAVLFLICTLLFLS 150 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666665555544
No 147
>PHA03054 IMV membrane protein; Provisional
Probab=56.63 E-value=28 Score=26.59 Aligned_cols=6 Identities=33% Similarity=0.733 Sum_probs=2.2
Q ss_pred hhHHHH
Q 039646 18 LLLILV 23 (325)
Q Consensus 18 iliIi~ 23 (325)
.++|++
T Consensus 49 ~~~ii~ 54 (72)
T PHA03054 49 YWLIII 54 (72)
T ss_pred HHHHHH
Confidence 333333
No 148
>PHA02975 hypothetical protein; Provisional
Probab=55.73 E-value=28 Score=26.49 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=4.1
Q ss_pred HhhHHHHHHHH
Q 039646 17 VLLLILVIVAV 27 (325)
Q Consensus 17 ~iliIi~IL~v 27 (325)
.+++|++++++
T Consensus 44 ~~~~ii~i~~v 54 (69)
T PHA02975 44 SIILIIFIIFI 54 (69)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 149
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=55.44 E-value=9.2 Score=40.64 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039646 18 LLLILVIVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
+|||+.+++-+++|+++++++...|+|+.
T Consensus 269 lWII~gVlvPv~vV~~Iiiil~~~LCRk~ 297 (684)
T PF12877_consen 269 LWIIAGVLVPVLVVLLIIIILYWKLCRKN 297 (684)
T ss_pred eEEEehHhHHHHHHHHHHHHHHHHHhccc
Confidence 34444445555555555555555555553
No 150
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=54.92 E-value=7.4 Score=34.38 Aligned_cols=8 Identities=38% Similarity=0.883 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 039646 24 IVAVVFFI 31 (325)
Q Consensus 24 IL~vv~~i 31 (325)
|++||++|
T Consensus 88 Vi~Iv~~I 95 (179)
T PF13908_consen 88 VIAIVVLI 95 (179)
T ss_pred HHHHHHhH
Confidence 33334333
No 151
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.75 E-value=5.8 Score=39.69 Aligned_cols=44 Identities=25% Similarity=0.514 Sum_probs=31.8
Q ss_pred CCcCceecccccCCC--ceeecCCCCceecHHHHHHHHhcCCCCCcc
Q 039646 99 PFDCAVCLCEFSEHD--NLRLLPSCSHAFHITCIDTWLLSNSTCPLC 143 (325)
Q Consensus 99 ~~~C~ICle~~~~~~--~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlC 143 (325)
-.+|+.|.-.++... ...+.. |+|.||..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 356888876554333 344555 99999999999998887777555
No 152
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=53.49 E-value=7.6 Score=26.74 Aligned_cols=43 Identities=26% Similarity=0.536 Sum_probs=28.4
Q ss_pred CceecccccCCCceeecCCCCceecHHHHHHHHh------cCCCCCcccc
Q 039646 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL------SNSTCPLCRG 145 (325)
Q Consensus 102 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~------~~~tCPlCR~ 145 (325)
|.||...-. ...++.-..|+..||..|+..=.. ..-.||.|+.
T Consensus 2 C~vC~~~~~-~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDD-DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCT-TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCC-CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 888988433 344444445999999999876433 1345888853
No 153
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=53.48 E-value=19 Score=29.69 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 20 LILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 20 iIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
++++|++++|++.++..++.....++
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~r 27 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQR 27 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555554555444333333
No 154
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=53.06 E-value=12 Score=36.71 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=32.7
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRG 145 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 145 (325)
....|-.|.++.......+.- .|.|.||.+|=.--=..-..||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCE-SCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEEch-hccceeeccchHHHHhhhhcCCCcCC
Confidence 455699998777666555544 49999999994432233456999963
No 155
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=52.91 E-value=11 Score=26.36 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=26.0
Q ss_pred CceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 102 CAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 102 C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
|+.|-..+...+.+... -+..||..| ..|-.|+..|...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCC
Confidence 66777777654443222 578888877 5688888777554
No 156
>PHA02819 hypothetical protein; Provisional
Probab=52.75 E-value=31 Score=26.39 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.2
Q ss_pred hhHHHH
Q 039646 18 LLLILV 23 (325)
Q Consensus 18 iliIi~ 23 (325)
.++|++
T Consensus 47 ~~~ii~ 52 (71)
T PHA02819 47 YYLIIG 52 (71)
T ss_pred HHHHHH
Confidence 333333
No 157
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=51.47 E-value=15 Score=29.38 Aligned_cols=8 Identities=38% Similarity=0.310 Sum_probs=3.1
Q ss_pred HHHHHHhC
Q 039646 38 LIRYLKKR 45 (325)
Q Consensus 38 l~r~l~rr 45 (325)
+++++++|
T Consensus 51 wfvCC~kR 58 (94)
T PF05393_consen 51 WFVCCKKR 58 (94)
T ss_pred HHHHHHHh
Confidence 33344433
No 158
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=50.68 E-value=7.3 Score=28.70 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=19.1
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHH
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWL 134 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl 134 (325)
+...|.+|...|..-..-.....||++|+..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3457999999997644444455699999999876543
No 159
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=49.61 E-value=17 Score=35.58 Aligned_cols=50 Identities=20% Similarity=0.506 Sum_probs=32.8
Q ss_pred CCcCceeccccc-----CCC-----------ceeecCCCCceecHHHHHHHHhc---------CCCCCcccccccC
Q 039646 99 PFDCAVCLCEFS-----EHD-----------NLRLLPSCSHAFHITCIDTWLLS---------NSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~-----~~~-----------~~~~lp~C~H~FH~~CI~~Wl~~---------~~tCPlCR~~l~~ 149 (325)
..+|++|+..=. .+. .....| |||+--..-..-|-+. +..||.|-+.|..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 568999996511 111 112456 9999777777778764 4459999776654
No 160
>PLN02189 cellulose synthase
Probab=48.53 E-value=22 Score=39.95 Aligned_cols=50 Identities=18% Similarity=0.408 Sum_probs=34.2
Q ss_pred CcCceeccccc---CCCceeecCCCCceecHHHHHHHHh-cCCCCCcccccccC
Q 039646 100 FDCAVCLCEFS---EHDNLRLLPSCSHAFHITCIDTWLL-SNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~---~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~ 149 (325)
..|.||-+++. +++.-+-...|+--.|..|.+-=-+ .++.||.|++....
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 47999999874 3333333344777899999843222 36779999998864
No 161
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=47.66 E-value=12 Score=26.66 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 039646 20 LILVIVAVVFFIFGLVHLLIRYLKK 44 (325)
Q Consensus 20 iIi~IL~vv~~ii~ll~ll~r~l~r 44 (325)
+.-+|+++++|++++++++-..+++
T Consensus 16 igGLi~A~vlfi~Gi~iils~kckC 40 (50)
T PF02038_consen 16 IGGLIFAGVLFILGILIILSGKCKC 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcCcccc
Confidence 3445667777777777776554443
No 162
>PF15179 Myc_target_1: Myc target protein 1
Probab=47.50 E-value=37 Score=30.71 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=27.4
Q ss_pred chhHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 039646 14 ISPVLLLILVIVAVVFFIFGLVHLLIRYLKKRPS 47 (325)
Q Consensus 14 isp~iliIi~IL~vv~~ii~ll~ll~r~l~rr~~ 47 (325)
+.++|+-+.+-+++.++|-.++++++.++.||+.
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~~LltwlSRRRA 51 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIWALLTWLSRRRA 51 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5667777777788888888889999999988863
No 163
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=46.91 E-value=21 Score=32.68 Aligned_cols=9 Identities=33% Similarity=0.409 Sum_probs=3.6
Q ss_pred hhHHHHHHH
Q 039646 18 LLLILVIVA 26 (325)
Q Consensus 18 iliIi~IL~ 26 (325)
++|.|++++
T Consensus 101 ~lI~lv~~g 109 (202)
T PF06365_consen 101 TLIALVTSG 109 (202)
T ss_pred EEEehHHhh
Confidence 333333333
No 164
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=46.36 E-value=40 Score=31.33 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039646 20 LILVIVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 20 iIi~IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
-++-+++++++|+++++++.+++.||.
T Consensus 67 ~l~qmi~aL~~VI~Liy~l~rwL~rR~ 93 (219)
T PRK13415 67 DFVKLIGATLFVIFLIYALVKWLNKRN 93 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555666777777778888874
No 165
>PF15050 SCIMP: SCIMP protein
Probab=44.69 E-value=87 Score=26.53 Aligned_cols=7 Identities=14% Similarity=0.392 Sum_probs=3.2
Q ss_pred HHHHHhC
Q 039646 39 IRYLKKR 45 (325)
Q Consensus 39 ~r~l~rr 45 (325)
.|.+.|+
T Consensus 31 cR~~lRq 37 (133)
T PF15050_consen 31 CRWQLRQ 37 (133)
T ss_pred HHHHHHc
Confidence 4444444
No 166
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.05 E-value=26 Score=27.75 Aligned_cols=34 Identities=12% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCCCCchhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039646 9 SATSRISPVLLLILVIVAVVFFIFGLVHLLIRYLKK 44 (325)
Q Consensus 9 ss~~~isp~iliIi~IL~vv~~ii~ll~ll~r~l~r 44 (325)
+++-++.|.+++++.+.++.++ +.+|++-++...
T Consensus 53 a~GlKV~PvvVLvmSvgFIasV--~~LHi~gK~~~~ 86 (88)
T KOG3457|consen 53 APGLKVDPVVVLVMSVGFIASV--FALHIWGKLTRS 86 (88)
T ss_pred CCCceeCCeeehhhhHHHHHHH--HHHHHHHHHhhc
Confidence 4577888988888777766544 467887777654
No 167
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=42.55 E-value=38 Score=37.06 Aligned_cols=28 Identities=18% Similarity=0.511 Sum_probs=15.1
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHhCC
Q 039646 19 LLILVIVA-VVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 19 liIi~IL~-vv~~ii~ll~ll~r~l~rr~ 46 (325)
+|+++||. ++|++++++.+|+.||+|+.
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrrkc 301 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRRKC 301 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 45555555 44555555555555555543
No 168
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=42.32 E-value=18 Score=25.39 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=24.3
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHH
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWL 134 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl 134 (325)
..|.+|-..|..-..-.....||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46899988886544333344599999999976543
No 169
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=42.23 E-value=14 Score=39.94 Aligned_cols=27 Identities=37% Similarity=0.755 Sum_probs=19.5
Q ss_pred ecCCCCceecHHHHHHHHhcCCCCCcccccc
Q 039646 117 LLPSCSHAFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 117 ~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
+.|.|.|.-|..=|.+ .+.||+|...+
T Consensus 1158 lC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1158 LCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred Eccccccccccccccc----cccCccccChh
Confidence 4566999888766544 57899997644
No 170
>PLN02436 cellulose synthase A
Probab=41.97 E-value=32 Score=38.89 Aligned_cols=51 Identities=18% Similarity=0.433 Sum_probs=34.1
Q ss_pred CCcCceeccccc---CCCceeecCCCCceecHHHHHHHHh-cCCCCCcccccccC
Q 039646 99 PFDCAVCLCEFS---EHDNLRLLPSCSHAFHITCIDTWLL-SNSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~---~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~ 149 (325)
...|.||-+++. +++.-+-...|+--.|..|.+-=-+ .++.||.|++....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 347999999863 3333333334777799999843222 36779999998763
No 171
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=41.54 E-value=24 Score=32.69 Aligned_cols=8 Identities=38% Similarity=0.858 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 039646 36 HLLIRYLK 43 (325)
Q Consensus 36 ~ll~r~l~ 43 (325)
..++||++
T Consensus 57 ~v~vR~CR 64 (221)
T PF08374_consen 57 VVLVRYCR 64 (221)
T ss_pred HHHHHHHh
Confidence 33445544
No 172
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=39.42 E-value=27 Score=23.94 Aligned_cols=8 Identities=0% Similarity=0.330 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 039646 37 LLIRYLKK 44 (325)
Q Consensus 37 ll~r~l~r 44 (325)
++.++..|
T Consensus 29 iYRKw~aR 36 (43)
T PF08114_consen 29 IYRKWQAR 36 (43)
T ss_pred HHHHHHHH
Confidence 33333333
No 173
>PRK01844 hypothetical protein; Provisional
Probab=38.85 E-value=65 Score=24.76 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 18 LLLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
++|+++|++++..+++-+++..+++.+.
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ark~~~k~ 32 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544455545555444
No 174
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.56 E-value=18 Score=27.33 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=8.9
Q ss_pred eecHHHHHHHHh
Q 039646 124 AFHITCIDTWLL 135 (325)
Q Consensus 124 ~FH~~CI~~Wl~ 135 (325)
-||..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 175
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=38.33 E-value=28 Score=27.99 Aligned_cols=14 Identities=29% Similarity=0.645 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHHH
Q 039646 18 LLLILVIVAVVFFI 31 (325)
Q Consensus 18 iliIi~IL~vv~~i 31 (325)
+|+|.++|+++|+|
T Consensus 6 ~llL~l~LA~lLli 19 (95)
T PF07172_consen 6 FLLLGLLLAALLLI 19 (95)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 177
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=37.70 E-value=71 Score=27.19 Aligned_cols=8 Identities=13% Similarity=0.015 Sum_probs=3.2
Q ss_pred CCCCCCch
Q 039646 8 SSATSRIS 15 (325)
Q Consensus 8 ~ss~~~is 15 (325)
|.+.+-..
T Consensus 11 P~~vswwP 18 (146)
T PF14316_consen 11 PPPVSWWP 18 (146)
T ss_pred CCCCCCCC
Confidence 34444333
No 178
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=37.46 E-value=59 Score=22.39 Aligned_cols=24 Identities=29% Similarity=0.676 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 22 LVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 22 i~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
+..++++++.+++..++.+|+.++
T Consensus 13 L~Sl~vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 13 LMSLIVIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666655
No 179
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=36.61 E-value=20 Score=23.55 Aligned_cols=26 Identities=23% Similarity=0.608 Sum_probs=16.6
Q ss_pred cCceecccccCCCce-------eecCCCCceec
Q 039646 101 DCAVCLCEFSEHDNL-------RLLPSCSHAFH 126 (325)
Q Consensus 101 ~C~ICle~~~~~~~~-------~~lp~C~H~FH 126 (325)
.|+=|...|..++.. ...+.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 588888888765531 23345778774
No 180
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=36.48 E-value=34 Score=29.82 Aligned_cols=38 Identities=8% Similarity=0.211 Sum_probs=22.9
Q ss_pred HHHhhCCceeeecccCCCCCCcCceecccccCCCceeec
Q 039646 80 SLIDALPMFYYKDIVGLKEPFDCAVCLCEFSEHDNLRLL 118 (325)
Q Consensus 80 ~~i~~Lp~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~l 118 (325)
..+.++-.+.|..-.+..++...++|+-+-. ++-++++
T Consensus 78 ~~~~kvgvvRYnAF~dmGg~LSFslAlLD~~-~nGvVlt 115 (151)
T PF14584_consen 78 NCVQKVGVVRYNAFEDMGGDLSFSLALLDDN-NNGVVLT 115 (151)
T ss_pred hccceEEEEEccCcccccccceeeeEEEeCC-CCEEEEE
Confidence 3344455567776666777888888886532 2344443
No 181
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=34.83 E-value=49 Score=37.44 Aligned_cols=50 Identities=16% Similarity=0.418 Sum_probs=33.2
Q ss_pred CcCceeccccc---CCCceeecCCCCceecHHHHHH-HHhcCCCCCcccccccC
Q 039646 100 FDCAVCLCEFS---EHDNLRLLPSCSHAFHITCIDT-WLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~---~~~~~~~lp~C~H~FH~~CI~~-Wl~~~~tCPlCR~~l~~ 149 (325)
..|.||-+++. +++.-+-...|+--.|..|.+- .-..++.||.|++....
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 47999999864 2332233334777799999842 12246779999998763
No 182
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=33.64 E-value=89 Score=26.29 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 20 LILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 20 iIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
+|-.+.++++.+++.+.|+.|+++|.
T Consensus 89 VIGGLcaL~LaamGA~~LLrR~cRr~ 114 (126)
T PF03229_consen 89 VIGGLCALTLAAMGAGALLRRCCRRA 114 (126)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666677777766654
No 183
>PF14979 TMEM52: Transmembrane 52
Probab=33.21 E-value=1.2e+02 Score=26.52 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=18.1
Q ss_pred CCchhHhhHHHH-HHHHHHHHHHHHHHHHHHHHhCC
Q 039646 12 SRISPVLLLILV-IVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 12 ~~isp~iliIi~-IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
++.+..|.|-++ ++++++++.++...++||++.|+
T Consensus 14 ~~W~~LWyIwLill~~~llLLCG~ta~C~rfCClrk 49 (154)
T PF14979_consen 14 TRWSSLWYIWLILLIGFLLLLCGLTASCVRFCCLRK 49 (154)
T ss_pred cceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444433333 33344445566777788555554
No 184
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=33.16 E-value=47 Score=29.31 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 19 LLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 19 liIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
.|+++|++++++++.++...++-++++
T Consensus 4 vil~~iv~il~lvl~~l~~~Ir~lq~~ 30 (175)
T COG4741 4 VILILIVFILALVLYLLRAYIRSLQGK 30 (175)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555556655554
No 185
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.05 E-value=77 Score=22.97 Aligned_cols=30 Identities=27% Similarity=0.229 Sum_probs=15.6
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039646 15 SPVLLLILVIVAVVFFIFGLVHLLIRYLKK 44 (325)
Q Consensus 15 sp~iliIi~IL~vv~~ii~ll~ll~r~l~r 44 (325)
-|..++|++.+++.+++..++.+......|
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r 47 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLR 47 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544443333
No 186
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=32.90 E-value=71 Score=25.59 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039646 19 LLILVIVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 19 liIi~IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
+++++.+++++++..++..+.|...||+
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 4444444444555555555556555554
No 187
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=32.90 E-value=24 Score=33.49 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=30.4
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCC--CCcc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNST--CPLC 143 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~t--CPlC 143 (325)
...|+|=...+.. +.+-.+|+|+|-.+=|...+....+ ||+=
T Consensus 176 s~rdPis~~~I~n---PviSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVN---PVISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhc---hhhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 4568887766655 3344469999999999998876444 7764
No 188
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=32.67 E-value=58 Score=25.76 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=6.5
Q ss_pred CCchhHhhHHHHH
Q 039646 12 SRISPVLLLILVI 24 (325)
Q Consensus 12 ~~isp~iliIi~I 24 (325)
..+.|..+..|+|
T Consensus 20 ~~l~pn~lMtILi 32 (85)
T PF10717_consen 20 NGLNPNTLMTILI 32 (85)
T ss_pred cccChhHHHHHHH
Confidence 4556655544433
No 189
>PRK00523 hypothetical protein; Provisional
Probab=32.11 E-value=95 Score=23.89 Aligned_cols=27 Identities=19% Similarity=-0.044 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 19 LLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 19 liIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
+|+++|++++.-+++-+++..+++.+.
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333444444444443
No 190
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.81 E-value=1e+02 Score=23.65 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 18 LLLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
+.++++++++++.+++-.++..++..+.
T Consensus 5 lail~ivl~ll~G~~~G~fiark~~~k~ 32 (71)
T COG3763 5 LAILLIVLALLAGLIGGFFIARKQMKKQ 32 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554455555555444
No 191
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=31.80 E-value=60 Score=23.62 Aligned_cols=28 Identities=36% Similarity=0.575 Sum_probs=19.6
Q ss_pred CCCchhHhhHHHHHHHHHHHHHHHHHHH
Q 039646 11 TSRISPVLLLILVIVAVVFFIFGLVHLL 38 (325)
Q Consensus 11 ~~~isp~iliIi~IL~vv~~ii~ll~ll 38 (325)
-+..+|.-+|+..++++++|+..++.+.
T Consensus 25 f~~~~p~~~Ii~gii~~~~fV~~Lv~lV 52 (56)
T PF11174_consen 25 FAQGSPVHFIIVGIILAALFVAGLVLLV 52 (56)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888877777666543
No 192
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.73 E-value=28 Score=33.61 Aligned_cols=39 Identities=23% Similarity=0.492 Sum_probs=28.2
Q ss_pred CCCCcCceecccccCCCceeecCC-CCceecHHHHHHHHhc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPS-CSHAFHITCIDTWLLS 136 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~-C~H~FH~~CI~~Wl~~ 136 (325)
.....|.+|.|.+++-. .+..|. =.|.||..|-.+-++.
T Consensus 266 ~apLcCTLC~ERLEDTH-FVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTH-FVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CCceeehhhhhhhccCc-eeecCCCcccceecccCHHHHHh
Confidence 45688999999987633 333331 1599999999998875
No 193
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=31.73 E-value=29 Score=39.29 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=23.5
Q ss_pred CCchhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039646 12 SRISPVLLLILVIVAVVFFIFGLVHLLIRY 41 (325)
Q Consensus 12 ~~isp~iliIi~IL~vv~~ii~ll~ll~r~ 41 (325)
....|+|+||+.+++.++++.+|+++|+++
T Consensus 973 ~~~vp~wiIi~svl~GLLlL~llv~~LwK~ 1002 (1030)
T KOG3637|consen 973 ERPVPLWIIILSVLGGLLLLALLVLLLWKC 1002 (1030)
T ss_pred CCccceeeehHHHHHHHHHHHHHHHHHHhc
Confidence 344788899999998888888887777654
No 194
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=31.52 E-value=16 Score=27.88 Aligned_cols=40 Identities=23% Similarity=0.440 Sum_probs=21.0
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
..|+.|..++... =+|.+|..|-.. +.....||-|..+|.
T Consensus 2 ~~CP~C~~~L~~~--------~~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--------GGHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE--------TTEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe--------CCEEECcccccc-ceecccCCCcccHHH
Confidence 4699998876442 256666667554 345667999988763
No 195
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=31.42 E-value=53 Score=25.68 Aligned_cols=51 Identities=16% Similarity=0.349 Sum_probs=19.1
Q ss_pred CCcCceecccccC---CCceeecCCCCceecHHHHHHHHh-cCCCCCcccccccC
Q 039646 99 PFDCAVCLCEFSE---HDNLRLLPSCSHAFHITCIDTWLL-SNSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~~---~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~ 149 (325)
...|.||-+++-. ++..+....|+--.|..|..-=.+ .++.||.|+.....
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 4579999988632 222222223777788999765443 46779999977654
No 196
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=31.18 E-value=40 Score=23.86 Aligned_cols=23 Identities=26% Similarity=0.738 Sum_probs=13.4
Q ss_pred CCCceecHHHHHHHHhcCCCCCcc
Q 039646 120 SCSHAFHITCIDTWLLSNSTCPLC 143 (325)
Q Consensus 120 ~C~H~FH~~CI~~Wl~~~~tCPlC 143 (325)
.|+|.|-..=-.+ ......||.|
T Consensus 33 ~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhh-ccCCCCCCCC
Confidence 4777665543322 2445669988
No 197
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=31.08 E-value=39 Score=32.42 Aligned_cols=28 Identities=25% Similarity=0.635 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 18 LLLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
++|-++|.+.++|+++++.+++-+++||
T Consensus 230 VlIslAiALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 230 VLISLAIALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred EEEehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444555555444444
No 198
>PLN02400 cellulose synthase
Probab=31.06 E-value=56 Score=37.05 Aligned_cols=50 Identities=16% Similarity=0.378 Sum_probs=32.6
Q ss_pred CcCceeccccc---CCCceeecCCCCceecHHHHHH-HHhcCCCCCcccccccC
Q 039646 100 FDCAVCLCEFS---EHDNLRLLPSCSHAFHITCIDT-WLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~---~~~~~~~lp~C~H~FH~~CI~~-Wl~~~~tCPlCR~~l~~ 149 (325)
..|.||-+++. +++.-+-.-.|+--.|..|.+- .-..++.||.|+.....
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 47999999864 2332223333777799999732 11236779999998763
No 199
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=31.05 E-value=28 Score=34.14 Aligned_cols=42 Identities=29% Similarity=0.660 Sum_probs=27.1
Q ss_pred CCcCceecccccCC-----------CceeecCCCCce--ecHHHHHHHHhc------CCCCCccccc
Q 039646 99 PFDCAVCLCEFSEH-----------DNLRLLPSCSHA--FHITCIDTWLLS------NSTCPLCRGT 146 (325)
Q Consensus 99 ~~~C~ICle~~~~~-----------~~~~~lp~C~H~--FH~~CI~~Wl~~------~~tCPlCR~~ 146 (325)
-..|++=|..+... +..+.|. |||+ +|. |=.+ ...||+||..
T Consensus 290 RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~-CGHV~G~H~-----WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 290 RPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLN-CGHVHGYHN-----WGVRENTGQRERECPMCRVV 350 (429)
T ss_pred CCCCCcccceeecccccccccccccCCeEEEe-ccccccccc-----cccccccCcccCcCCeeeee
Confidence 35799988776432 2345676 9986 664 6543 3359999863
No 200
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=30.90 E-value=1.4e+02 Score=26.98 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=15.6
Q ss_pred CCCCCchhHhhHHHHHHHHHHHHHHHH
Q 039646 9 SATSRISPVLLLILVIVAVVFFIFGLV 35 (325)
Q Consensus 9 ss~~~isp~iliIi~IL~vv~~ii~ll 35 (325)
|....++.+.+++++++++++|++++|
T Consensus 3 ~~~~~lsGv~vvlv~a~g~l~~vllfI 29 (186)
T PF07406_consen 3 SNSEWLSGVNVVLVIAYGSLVFVLLFI 29 (186)
T ss_pred cccccccceeeehhhHHHHHHHHHHHH
Confidence 445556666666666666665554333
No 201
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=30.54 E-value=17 Score=36.61 Aligned_cols=50 Identities=20% Similarity=0.478 Sum_probs=0.0
Q ss_pred CCcCceecccc-------------cCCC---ceeecCCCCceecHHHHHHHHhc---------CCCCCcccccccC
Q 039646 99 PFDCAVCLCEF-------------SEHD---NLRLLPSCSHAFHITCIDTWLLS---------NSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~-------------~~~~---~~~~lp~C~H~FH~~CI~~Wl~~---------~~tCPlCR~~l~~ 149 (325)
...|++|+..- ..+. .....| |||+--.....-|-+. +..||-|-.+|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 56799999642 1111 123456 9999888888888753 3459999877753
No 202
>PRK14710 hypothetical protein; Provisional
Probab=30.25 E-value=34 Score=26.28 Aligned_cols=20 Identities=25% Similarity=0.643 Sum_probs=12.4
Q ss_pred CCCchhHhhHHHHHHHHHHH
Q 039646 11 TSRISPVLLLILVIVAVVFF 30 (325)
Q Consensus 11 ~~~isp~iliIi~IL~vv~~ 30 (325)
+++++..+++|+.|++++++
T Consensus 5 ssn~skm~ififaiii~v~l 24 (86)
T PRK14710 5 SSNLSKMIIFIFAIIIIVVL 24 (86)
T ss_pred ccchhHHHHHHHHHHHHHHH
Confidence 35677777777666655443
No 203
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=29.89 E-value=1.2e+02 Score=23.03 Aligned_cols=21 Identities=14% Similarity=0.100 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCC
Q 039646 26 AVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 26 ~vv~~ii~ll~ll~r~l~rr~ 46 (325)
+++.++++.++++..|.+++.
T Consensus 8 i~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 8 IIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 333333344444555655544
No 204
>PHA02819 hypothetical protein; Provisional
Probab=29.88 E-value=1.4e+02 Score=22.93 Aligned_cols=8 Identities=25% Similarity=0.438 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 039646 19 LLILVIVA 26 (325)
Q Consensus 19 liIi~IL~ 26 (325)
.-.++|++
T Consensus 45 ~~~~~ii~ 52 (71)
T PHA02819 45 LRYYLIIG 52 (71)
T ss_pred hHHHHHHH
Confidence 33333333
No 205
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=29.74 E-value=17 Score=25.76 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=15.7
Q ss_pred CceeecCCCCceecHHHHHHH
Q 039646 113 DNLRLLPSCSHAFHITCIDTW 133 (325)
Q Consensus 113 ~~~~~lp~C~H~FH~~CI~~W 133 (325)
...+..+.|+|.||..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 344556459999999998877
No 206
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=29.73 E-value=43 Score=26.84 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=21.4
Q ss_pred CCCcCceecccccCCCceeecC--CCCceecHHHHHH
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLP--SCSHAFHITCIDT 132 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp--~C~H~FH~~CI~~ 132 (325)
....|.||.... +..+ ... .|...||..|...
T Consensus 54 ~~~~C~iC~~~~--G~~i-~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSG--GACI-KCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCC--ceeE-EcCCCCCCcCCCHHHHHH
Confidence 456899999872 2222 221 3788999999866
No 207
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=29.49 E-value=88 Score=27.40 Aligned_cols=24 Identities=21% Similarity=0.276 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039646 20 LILVIVAVVFFIFGLVHLLIRYLK 43 (325)
Q Consensus 20 iIi~IL~vv~~ii~ll~ll~r~l~ 43 (325)
+|++|.+.+++.+++++|++...+
T Consensus 121 lilaisvtvv~~iliii~CLiei~ 144 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCLIEIC 144 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333333333333
No 208
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=29.34 E-value=45 Score=32.72 Aligned_cols=46 Identities=7% Similarity=-0.109 Sum_probs=32.3
Q ss_pred CCCCCcCceecccccCCCceeecCCCCc-eecHHHHHHHHhcCCCCCcccccc
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSH-AFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H-~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
+....+|-+|-+.... ....+ |+| .|+..|.. +....+||+|.+..
T Consensus 340 ~~s~~~~~~~~~~~~s---t~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLS---TIWSG-GNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred chhhcccccccCceee---eEeec-CCcccChhhhhh--cccCCccccccccc
Confidence 3445678888765433 34556 998 58999977 55678899997643
No 209
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=29.23 E-value=56 Score=23.31 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.2
Q ss_pred HHHHHH
Q 039646 36 HLLIRY 41 (325)
Q Consensus 36 ~ll~r~ 41 (325)
+++..|
T Consensus 22 ~~~K~y 27 (50)
T PF12606_consen 22 TTLKAY 27 (50)
T ss_pred HHhhcc
Confidence 333333
No 210
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=28.97 E-value=41 Score=20.83 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=10.1
Q ss_pred cCceecccccCCCceeecCCCCceecHHHH
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCI 130 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI 130 (325)
.|.+|...... ...-.-+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47888877655 233333449999999985
No 211
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=28.94 E-value=59 Score=23.23 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Q 039646 24 IVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 24 IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
+++.+|++.+++.+++....|..
T Consensus 5 ~iV~i~iv~~lLg~~I~~~~K~y 27 (50)
T PF12606_consen 5 LIVSIFIVMGLLGLSICTTLKAY 27 (50)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444555555555665666554
No 212
>PTZ00370 STEVOR; Provisional
Probab=28.88 E-value=61 Score=31.38 Aligned_cols=9 Identities=33% Similarity=0.634 Sum_probs=3.6
Q ss_pred HHHHHHHhC
Q 039646 37 LLIRYLKKR 45 (325)
Q Consensus 37 ll~r~l~rr 45 (325)
++..+|.||
T Consensus 273 ilYiwlyrr 281 (296)
T PTZ00370 273 ILYIWLYRR 281 (296)
T ss_pred HHHHHHHHh
Confidence 333344444
No 213
>PF15106 TMEM156: TMEM156 protein family
Probab=28.83 E-value=77 Score=29.34 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 039646 18 LLLILVIVAVVFFIFGLVHL 37 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~l 37 (325)
.|+++++++.+|+|+++++-
T Consensus 177 TWYvLVllVfiflii~iI~K 196 (226)
T PF15106_consen 177 TWYVLVLLVFIFLIILIIYK 196 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555544443
No 214
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.78 E-value=49 Score=24.94 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=17.5
Q ss_pred CCchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 12 SRISPVLLLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 12 ~~isp~iliIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
-.++|-+|++|+|..+++++++-.+.+..|.++.
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk~ 41 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQKT 41 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566766666655554444444444444454443
No 215
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=28.64 E-value=1.5e+02 Score=21.78 Aligned_cols=8 Identities=25% Similarity=0.326 Sum_probs=3.5
Q ss_pred HHHHHHhC
Q 039646 38 LIRYLKKR 45 (325)
Q Consensus 38 l~r~l~rr 45 (325)
++|.+...
T Consensus 26 ~IRri~~~ 33 (58)
T PF13314_consen 26 FIRRILIN 33 (58)
T ss_pred HHHHHHHh
Confidence 34444443
No 216
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=28.37 E-value=89 Score=25.70 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=22.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039646 17 VLLLILVIVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 17 ~iliIi~IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
.++.|++++++++++.-++++.....+++-
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~rq~k~ 31 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQRQKKA 31 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 356677777777777777888877777775
No 217
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=28.37 E-value=70 Score=31.81 Aligned_cols=8 Identities=38% Similarity=0.717 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 039646 20 LILVIVAV 27 (325)
Q Consensus 20 iIi~IL~v 27 (325)
|+..|+++
T Consensus 312 IiaSiIAI 319 (353)
T TIGR01477 312 IIASIIAI 319 (353)
T ss_pred HHHHHHHH
Confidence 33333333
No 218
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=28.17 E-value=1.6e+02 Score=22.05 Aligned_cols=27 Identities=22% Similarity=0.499 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 19 LLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 19 liIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
.+.++-+.+||++++++.+++..+.+-
T Consensus 6 ~i~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 6 QIMIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555554
No 219
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.11 E-value=21 Score=25.30 Aligned_cols=11 Identities=45% Similarity=1.117 Sum_probs=5.6
Q ss_pred CCCcccccccC
Q 039646 139 TCPLCRGTLSS 149 (325)
Q Consensus 139 tCPlCR~~l~~ 149 (325)
.||+|.++|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999988754
No 220
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.11 E-value=15 Score=31.72 Aligned_cols=44 Identities=32% Similarity=0.730 Sum_probs=25.7
Q ss_pred CCCCCCcCceeccc-ccCCCceeecCCCCce-------ecHHHHHHHH-hcCC---CCCccccc
Q 039646 95 GLKEPFDCAVCLCE-FSEHDNLRLLPSCSHA-------FHITCIDTWL-LSNS---TCPLCRGT 146 (325)
Q Consensus 95 ~~~~~~~C~ICle~-~~~~~~~~~lp~C~H~-------FH~~CI~~Wl-~~~~---tCPlCR~~ 146 (325)
+..++..|.||+.. |.++ |||. ||..|--+-- +++. .|-+|+..
T Consensus 61 Gv~ddatC~IC~KTKFADG--------~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADG--------CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred ccCcCcchhhhhhcccccc--------cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 45677889999974 5553 6665 3444432221 2233 28888864
No 221
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=28.05 E-value=8.4 Score=36.77 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=20.2
Q ss_pred CCcCceecccccCCCceeecC--CCCceecHHHHHHHHhcCCCCCcccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLP--SCSHAFHITCIDTWLLSNSTCPLCRG 145 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp--~C~H~FH~~CI~~Wl~~~~tCPlCR~ 145 (325)
...|+||-..-.... ++.-. .-.|.+|.-|-..|-.....||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 468999987632210 11100 12466788899999888889999943
No 222
>PTZ00046 rifin; Provisional
Probab=27.96 E-value=72 Score=31.78 Aligned_cols=7 Identities=57% Similarity=0.686 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 039646 20 LILVIVA 26 (325)
Q Consensus 20 iIi~IL~ 26 (325)
|+..|++
T Consensus 317 IiaSiiA 323 (358)
T PTZ00046 317 IIASIVA 323 (358)
T ss_pred HHHHHHH
Confidence 3333333
No 223
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=27.91 E-value=59 Score=34.84 Aligned_cols=9 Identities=11% Similarity=0.313 Sum_probs=4.5
Q ss_pred CCCCCCCCC
Q 039646 295 KSRLPSSSS 303 (325)
Q Consensus 295 ~~~~~~~~~ 303 (325)
.+||...+|
T Consensus 713 lgkFttaSD 721 (807)
T KOG1094|consen 713 LGKFTTASD 721 (807)
T ss_pred hccccchhh
Confidence 445555444
No 224
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=27.71 E-value=20 Score=41.84 Aligned_cols=49 Identities=29% Similarity=0.500 Sum_probs=37.8
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCcccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRGTL 147 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~l 147 (325)
....|.||.......+.+...- |.-.||..|+..-+..-+ .||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3457999999877755555554 888999999999887533 499999866
No 225
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=27.43 E-value=23 Score=30.08 Aligned_cols=25 Identities=16% Similarity=0.172 Sum_probs=2.0
Q ss_pred chhHhhHHHHHHHHHHHHHHHHHHH
Q 039646 14 ISPVLLLILVIVAVVFFIFGLVHLL 38 (325)
Q Consensus 14 isp~iliIi~IL~vv~~ii~ll~ll 38 (325)
+.-++.|...++.+++++.++..++
T Consensus 75 ~~l~~pi~~sal~v~lVl~llsg~l 99 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLVLALLSGFL 99 (129)
T ss_dssp SSSS---------------------
T ss_pred cceehhhhhhHHHHHHHHHHHHHHH
Confidence 5545555555555555544444333
No 226
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=27.30 E-value=19 Score=38.70 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=30.4
Q ss_pred CcCceecccccCCCce--eecC----CCCceecHHHHHHH----------HhcCCCCCcccccc
Q 039646 100 FDCAVCLCEFSEHDNL--RLLP----SCSHAFHITCIDTW----------LLSNSTCPLCRGTL 147 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~--~~lp----~C~H~FH~~CI~~W----------l~~~~tCPlCR~~l 147 (325)
..|-||-|+=...+.- ..+. .|.-.||..|...- +..-+.|-.|+.-+
T Consensus 118 KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 118 KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred ceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 4799999884333211 1111 37788999998763 12245699998765
No 227
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=27.16 E-value=33 Score=25.37 Aligned_cols=14 Identities=36% Similarity=1.035 Sum_probs=10.8
Q ss_pred CCCCCcccccccCC
Q 039646 137 NSTCPLCRGTLSSS 150 (325)
Q Consensus 137 ~~tCPlCR~~l~~~ 150 (325)
.+.||+|..++...
T Consensus 39 ~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 39 EPVCPLCKSPMVSG 52 (59)
T ss_pred CccCCCcCCccccc
Confidence 56799999877654
No 228
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=26.63 E-value=38 Score=31.67 Aligned_cols=25 Identities=24% Similarity=0.672 Sum_probs=18.4
Q ss_pred CcCceecccccCCCceeecCCCCcee
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAF 125 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~F 125 (325)
+.|++|...+...+.-..++ .+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 57999999997655555555 67877
No 229
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=26.46 E-value=1.3e+02 Score=26.70 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039646 24 IVAVVFFIFGLVHLLIRYLK 43 (325)
Q Consensus 24 IL~vv~~ii~ll~ll~r~l~ 43 (325)
++++.|..+++++|++|.++
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334444444455555443
No 230
>PHA03240 envelope glycoprotein M; Provisional
Probab=26.37 E-value=69 Score=29.82 Aligned_cols=7 Identities=14% Similarity=0.624 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 039646 19 LLILVIV 25 (325)
Q Consensus 19 liIi~IL 25 (325)
+||++|+
T Consensus 215 WIiilII 221 (258)
T PHA03240 215 WIFIAII 221 (258)
T ss_pred HHHHHHH
Confidence 3333333
No 231
>PRK05978 hypothetical protein; Provisional
Probab=26.29 E-value=40 Score=29.45 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=19.0
Q ss_pred CceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 122 SHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 122 ~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
||.|+ .+|+.+..||.|-.++...
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccC
Confidence 37776 6888899999998877654
No 232
>PHA02657 hypothetical protein; Provisional
Probab=26.22 E-value=1e+02 Score=24.50 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=4.0
Q ss_pred HhhCCceeee
Q 039646 82 IDALPMFYYK 91 (325)
Q Consensus 82 i~~Lp~~~~~ 91 (325)
...|..+-|.
T Consensus 75 F~qLD~VYYT 84 (95)
T PHA02657 75 FTRLDGVYYT 84 (95)
T ss_pred HHhhcceEEc
Confidence 3344444443
No 233
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.08 E-value=27 Score=34.02 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=37.9
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
....|.||...+...... ..|.|.|+..|...|......||.|+....
T Consensus 104 ~~~~~~~~~g~l~vpt~~---qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRI---QGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CccceeeeeeeEEecccc---cCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 445799999877664322 249999999999999999999999987553
No 234
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=25.92 E-value=34 Score=24.13 Aligned_cols=37 Identities=38% Similarity=0.783 Sum_probs=20.5
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHh--cCCCCCccccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL--SNSTCPLCRGT 146 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~--~~~tCPlCR~~ 146 (325)
.+.|+.|-+.|... .| +.| |.+.-.. ..-.||+|...
T Consensus 2 ~f~CP~C~~~~~~~----~L--~~H-----~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----SL--VEH-----CEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH----HH--HHH-----HHhHCcCCCCCccCCCchhh
Confidence 46799999855431 12 334 3333222 23459999763
No 235
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=25.74 E-value=34 Score=27.66 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=12.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039646 17 VLLLILVIVAVVFFIFGLVHLLIRYL 42 (325)
Q Consensus 17 ~iliIi~IL~vv~~ii~ll~ll~r~l 42 (325)
...+++++++++|.+++++.++..|.
T Consensus 60 ~~~iili~lls~v~IlVily~IyYFV 85 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYFV 85 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEEE
Confidence 34555555555555554444444333
No 236
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=25.57 E-value=80 Score=21.43 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=15.1
Q ss_pred CCCCCchhHhhHHHHHHHHHHHH
Q 039646 9 SATSRISPVLLLILVIVAVVFFI 31 (325)
Q Consensus 9 ss~~~isp~iliIi~IL~vv~~i 31 (325)
..+-++.|..++++.+.++++++
T Consensus 13 ~~giki~P~~Vl~~si~fi~~V~ 35 (41)
T PF03911_consen 13 APGIKIDPKTVLIISIAFIAIVI 35 (41)
T ss_dssp S-SS-BSCCHHHHHHHHHHHHHH
T ss_pred CCcceeCCeehHHHHHHHHHHHH
Confidence 35678899888877776665554
No 237
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=25.37 E-value=84 Score=24.88 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039646 21 ILVIVAVVFFIFGLVHLL 38 (325)
Q Consensus 21 Ii~IL~vv~~ii~ll~ll 38 (325)
.+..++++++||+|++++
T Consensus 26 ~lMtILivLVIIiLlIml 43 (85)
T PF10717_consen 26 TLMTILIVLVIIILLIML 43 (85)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 238
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=24.62 E-value=1.4e+02 Score=20.09 Aligned_cols=20 Identities=10% Similarity=0.497 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039646 22 LVIVAVVFFIFGLVHLLIRY 41 (325)
Q Consensus 22 i~IL~vv~~ii~ll~ll~r~ 41 (325)
+.+++.++|++++..+++.+
T Consensus 11 lc~l~~llflv~imliif~f 30 (43)
T PF11395_consen 11 LCFLSFLLFLVIIMLIIFWF 30 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 239
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=24.59 E-value=73 Score=25.79 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 18 LLLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
.|.+++....++++++++.+++.++.|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKH 68 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhh
Confidence 3444444444444433444444444444
No 240
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.54 E-value=79 Score=24.47 Aligned_cols=49 Identities=20% Similarity=0.523 Sum_probs=31.2
Q ss_pred CceecccccCCC-ceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCCCC
Q 039646 102 CAVCLCEFSEHD-NLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNS 153 (325)
Q Consensus 102 C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~ 153 (325)
|--|-.++-.+. ..++.. =.|.||.+|...- .+..||.|-..+...+..
T Consensus 8 CECCDrDLpp~s~dA~ICt-fEcTFCadCae~~--l~g~CPnCGGelv~RP~R 57 (84)
T COG3813 8 CECCDRDLPPDSTDARICT-FECTFCADCAENR--LHGLCPNCGGELVARPIR 57 (84)
T ss_pred CcccCCCCCCCCCceeEEE-EeeehhHhHHHHh--hcCcCCCCCchhhcCcCC
Confidence 555655554332 223322 4589999998864 367899998888765543
No 241
>PLN02195 cellulose synthase A
Probab=24.46 E-value=65 Score=36.15 Aligned_cols=48 Identities=21% Similarity=0.470 Sum_probs=32.9
Q ss_pred CcCceecccccC---CCceeecCCCCceecHHHHHHHHh--cCCCCCccccccc
Q 039646 100 FDCAVCLCEFSE---HDNLRLLPSCSHAFHITCIDTWLL--SNSTCPLCRGTLS 148 (325)
Q Consensus 100 ~~C~ICle~~~~---~~~~~~lp~C~H~FH~~CI~~Wl~--~~~tCPlCR~~l~ 148 (325)
..|.||-+++.. ++.-+-...|+--.|..|.+ +=+ .++.||.|+....
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhcCCccCCccCCccc
Confidence 479999987643 23233333488889999983 322 3677999998887
No 242
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=24.30 E-value=99 Score=25.25 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 039646 21 ILVIVAVVFFIFGLV 35 (325)
Q Consensus 21 Ii~IL~vv~~ii~ll 35 (325)
+++.|++++|+++++
T Consensus 18 ~FA~L~i~~FiILLI 32 (121)
T PF10669_consen 18 FFAFLFIVVFIILLI 32 (121)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 243
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.29 E-value=48 Score=27.36 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=27.3
Q ss_pred CCCcCceecccccCCC-ceeecCCCCceecHHHHHHHHhcCC--CCCcccc
Q 039646 98 EPFDCAVCLCEFSEHD-NLRLLPSCSHAFHITCIDTWLLSNS--TCPLCRG 145 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~--tCPlCR~ 145 (325)
+...|++|...|..-. .-.....|.|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 4568999998864321 2234445999999999554 11112 2777764
No 244
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=24.25 E-value=1.2e+02 Score=28.15 Aligned_cols=17 Identities=12% Similarity=0.381 Sum_probs=7.1
Q ss_pred HhhHHHHHHHHHHHHHH
Q 039646 17 VLLLILVIVAVVFFIFG 33 (325)
Q Consensus 17 ~iliIi~IL~vv~~ii~ 33 (325)
+-+|||++|++|..+++
T Consensus 132 IClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 132 ICLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 245
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=24.09 E-value=73 Score=27.28 Aligned_cols=15 Identities=47% Similarity=0.880 Sum_probs=11.6
Q ss_pred CCCCcccccccCCCC
Q 039646 138 STCPLCRGTLSSSDN 152 (325)
Q Consensus 138 ~tCPlCR~~l~~~~~ 152 (325)
..||.|...|...++
T Consensus 124 f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 124 FTCPRCGEELEEDDN 138 (147)
T ss_pred EECCCCCCEEEEcCc
Confidence 569999998876543
No 246
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=24.09 E-value=1.2e+02 Score=31.47 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=9.4
Q ss_pred cHHHHHHHHhcCC
Q 039646 126 HITCIDTWLLSNS 138 (325)
Q Consensus 126 H~~CI~~Wl~~~~ 138 (325)
+..|+..||..+.
T Consensus 291 ~kGsL~dyL~~nt 303 (534)
T KOG3653|consen 291 PKGSLCDYLKANT 303 (534)
T ss_pred cCCcHHHHHHhcc
Confidence 4668888887654
No 247
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=24.07 E-value=28 Score=30.38 Aligned_cols=26 Identities=31% Similarity=0.698 Sum_probs=19.1
Q ss_pred ecHHHHHHHHhcCC----CCCcccccccCC
Q 039646 125 FHITCIDTWLLSNS----TCPLCRGTLSSS 150 (325)
Q Consensus 125 FH~~CI~~Wl~~~~----tCPlCR~~l~~~ 150 (325)
||..|+++=|..-+ .||.|+..-...
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~ 31 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSGQ 31 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCCC
Confidence 89999998776543 499998764443
No 248
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=23.68 E-value=1.1e+02 Score=24.28 Aligned_cols=37 Identities=8% Similarity=0.261 Sum_probs=24.0
Q ss_pred CCCCchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039646 10 ATSRISPVLLLILVIVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 10 s~~~isp~iliIi~IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
|...+.++++.||+.-++++++..++..++-|+.|.+
T Consensus 8 svqplp~~~yyiiA~gga~llL~~v~l~vvL~C~r~~ 44 (87)
T PF11980_consen 8 SVQPLPPYWYYIIAMGGALLLLVAVCLGVVLYCHRFH 44 (87)
T ss_pred ccCCCCceeeHHHhhccHHHHHHHHHHHHHHhhhhhc
Confidence 4556888888888777776666655555555555543
No 249
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.51 E-value=1.1e+02 Score=22.33 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCCcCceecccccC--CCceeecCCCCceecHHHHH
Q 039646 98 EPFDCAVCLCEFSE--HDNLRLLPSCSHAFHITCID 131 (325)
Q Consensus 98 ~~~~C~ICle~~~~--~~~~~~lp~C~H~FH~~CI~ 131 (325)
....|+.|-..... .......|.||+.+|.+-.-
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~na 62 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNA 62 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHH
Confidence 45579999877665 44455566688887776543
No 250
>PRK03427 cell division protein ZipA; Provisional
Probab=23.04 E-value=92 Score=30.75 Aligned_cols=27 Identities=41% Similarity=0.453 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039646 20 LILVIVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 20 iIi~IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
+||+|+..|-+|.+|+|-|+-.++.|.
T Consensus 7 LiLivvGAIAIiAlL~HGlWtsRKers 33 (333)
T PRK03427 7 LILIIVGAIAIIALLVHGFWTSRKERS 33 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 566666677777788888877666554
No 251
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=23.04 E-value=42 Score=31.59 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=29.6
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCC--CC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNST--CP 141 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~t--CP 141 (325)
+..|+|-+..+.- +.+-.+|+|.|-.+-|...++...+ ||
T Consensus 189 ~nrCpitl~p~~~---pils~kcnh~~e~D~I~~~lq~~~trvcp 230 (275)
T COG5627 189 SNRCPITLNPDFY---PILSSKCNHKPEMDLINKKLQVECTRVCP 230 (275)
T ss_pred cccCCcccCcchh---HHHHhhhcccccHHHHHHHhcCCceeecc
Confidence 4679998876543 3333469999999999999986555 55
No 252
>PHA02975 hypothetical protein; Provisional
Probab=22.93 E-value=1.4e+02 Score=22.71 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=7.0
Q ss_pred chhHhhHHHHHHHHHHH
Q 039646 14 ISPVLLLILVIVAVVFF 30 (325)
Q Consensus 14 isp~iliIi~IL~vv~~ 30 (325)
-..++++|+.+++++++
T Consensus 44 ~~~~ii~i~~v~~~~~~ 60 (69)
T PHA02975 44 SIILIIFIIFITCIAVF 60 (69)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 253
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=22.80 E-value=69 Score=27.47 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCC
Q 039646 26 AVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 26 ~vv~~ii~ll~ll~r~l~rr~ 46 (325)
++.+++++.+.++.||.+|++
T Consensus 110 l~~i~is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 110 LVGIIITCCLLSVYRFTRRTK 130 (139)
T ss_pred HHHHHHHHHHHhhheeeeccc
Confidence 333344444455555555553
No 254
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.66 E-value=54 Score=34.47 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=6.4
Q ss_pred CchhHhhHHHHHHHH
Q 039646 13 RISPVLLLILVIVAV 27 (325)
Q Consensus 13 ~isp~iliIi~IL~v 27 (325)
.+.|.++++.+++++
T Consensus 6 ~l~pl~~~~~ivvv~ 20 (548)
T COG2268 6 GLMPLLMLIAIVVVV 20 (548)
T ss_pred hhhhHHHHHHHHHHH
Confidence 355653333333333
No 255
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=22.54 E-value=1.8e+02 Score=24.86 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=13.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 17 VLLLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 17 ~iliIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
++.|++++.+..||+++++.-++|-.++.
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvRSKK~E 72 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVRSKKRE 72 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444455555555555555554444
No 256
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.53 E-value=23 Score=23.92 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=13.8
Q ss_pred CCCceecHHHHHHHHhcCCCCCcccc
Q 039646 120 SCSHAFHITCIDTWLLSNSTCPLCRG 145 (325)
Q Consensus 120 ~C~H~FH~~CI~~Wl~~~~tCPlCR~ 145 (325)
.|||.|-...-..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 38877765221110 12445999987
No 257
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=21.85 E-value=86 Score=23.61 Aligned_cols=9 Identities=22% Similarity=0.678 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 039646 20 LILVIVAVV 28 (325)
Q Consensus 20 iIi~IL~vv 28 (325)
+|-++|+++
T Consensus 4 iiSIvLai~ 12 (66)
T PF07438_consen 4 IISIVLAIA 12 (66)
T ss_pred hHHHHHHHH
Confidence 333333333
No 258
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=21.81 E-value=13 Score=32.52 Aligned_cols=17 Identities=18% Similarity=0.567 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhCC
Q 039646 30 FIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 30 ~ii~ll~ll~r~l~rr~ 46 (325)
++++++.+++.|+.|++
T Consensus 62 ill~il~lvf~~c~r~k 78 (154)
T PF04478_consen 62 ILLGILALVFIFCIRRK 78 (154)
T ss_pred HHHHHHHhheeEEEecc
Confidence 33334444444444443
No 259
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.81 E-value=1.5e+02 Score=23.89 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 19 LLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 19 liIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
++.+++++++++++.++.-+++.+.+.
T Consensus 17 ~~~~~~l~~~~~~l~ll~~ll~~~~~~ 43 (108)
T PF07219_consen 17 WVALILLLLLFVVLYLLLRLLRRLLSL 43 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333344444444444444444444433
No 260
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=21.59 E-value=33 Score=37.63 Aligned_cols=47 Identities=15% Similarity=0.348 Sum_probs=31.1
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhc------CCCCCcccccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS------NSTCPLCRGTL 147 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~l 147 (325)
...|-.|....-. ..-+.+.|+|.||..|+..|... -..|+.|+...
T Consensus 229 ~~mC~~C~~tlfn--~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 229 REMCDRCETTLFN--IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred chhhhhhcccccc--eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 3568888765322 23355669999999999999621 22377776544
No 261
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=21.50 E-value=84 Score=24.64 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 039646 25 VAVVFFIFGLVHLL 38 (325)
Q Consensus 25 L~vv~~ii~ll~ll 38 (325)
++++||+..+++++
T Consensus 75 ~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 75 FAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444344333
No 262
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=21.47 E-value=67 Score=23.84 Aligned_cols=13 Identities=54% Similarity=1.134 Sum_probs=9.2
Q ss_pred CCCCCcccccccC
Q 039646 137 NSTCPLCRGTLSS 149 (325)
Q Consensus 137 ~~tCPlCR~~l~~ 149 (325)
+..||+|+..+..
T Consensus 2 k~~CPlCkt~~n~ 14 (61)
T PF05715_consen 2 KSLCPLCKTTLNV 14 (61)
T ss_pred CccCCcccchhhc
Confidence 4568999887743
No 263
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=21.37 E-value=1.6e+02 Score=24.69 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=20.6
Q ss_pred chhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039646 14 ISPVLLLILVIVAVVFFIFGLVHLLIRYLK 43 (325)
Q Consensus 14 isp~iliIi~IL~vv~~ii~ll~ll~r~l~ 43 (325)
-.|..|.++++.+++|.-+++.+|.+....
T Consensus 7 ~~~a~Ia~mVlGFi~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 7 WKPAWIAAMVLGFIVFWPLGLALLAYMIWG 36 (115)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777776665554
No 264
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=21.28 E-value=1.2e+02 Score=24.74 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=18.5
Q ss_pred CceecHHHHHHHHhc---------CCCCCcccc
Q 039646 122 SHAFHITCIDTWLLS---------NSTCPLCRG 145 (325)
Q Consensus 122 ~H~FH~~CI~~Wl~~---------~~tCPlCR~ 145 (325)
.=.||..||..++.. +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999999888743 224999986
No 265
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.11 E-value=31 Score=35.10 Aligned_cols=36 Identities=17% Similarity=0.464 Sum_probs=25.6
Q ss_pred CcCceecccccCCCce-----eecCCCCceecHHHHHHHHhc
Q 039646 100 FDCAVCLCEFSEHDNL-----RLLPSCSHAFHITCIDTWLLS 136 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~-----~~lp~C~H~FH~~CI~~Wl~~ 136 (325)
..|+.|....+..... ...+ |.|.||..|+..|...
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~-c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSAS-CKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCC-cCCeeceeeecccccc
Confidence 3499999888765522 1223 9999999998888654
No 266
>PHA03030 hypothetical protein; Provisional
Probab=21.09 E-value=55 Score=26.93 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhC
Q 039646 32 FGLVHLLIRYLKKR 45 (325)
Q Consensus 32 i~ll~ll~r~l~rr 45 (325)
.++++++++.+.|-
T Consensus 14 fl~iffYI~~IkRD 27 (122)
T PHA03030 14 FLFIFFYIRIIKRD 27 (122)
T ss_pred HHHHHHHheeeecc
Confidence 33444555555544
No 267
>PHA03049 IMV membrane protein; Provisional
Probab=20.89 E-value=2.1e+02 Score=21.75 Aligned_cols=11 Identities=27% Similarity=0.168 Sum_probs=4.8
Q ss_pred HHHHHHHHHhC
Q 039646 35 VHLLIRYLKKR 45 (325)
Q Consensus 35 l~ll~r~l~rr 45 (325)
++++..|-+++
T Consensus 17 lIvYgiYnkk~ 27 (68)
T PHA03049 17 LIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHhccc
Confidence 33344454443
No 268
>PHA03049 IMV membrane protein; Provisional
Probab=20.72 E-value=1.2e+02 Score=23.00 Aligned_cols=9 Identities=0% Similarity=-0.068 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 039646 36 HLLIRYLKK 44 (325)
Q Consensus 36 ~ll~r~l~r 44 (325)
-++-|....
T Consensus 21 giYnkk~~~ 29 (68)
T PHA03049 21 GIYNKKTTT 29 (68)
T ss_pred HHHhccccc
Confidence 334444433
No 269
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=20.48 E-value=1.2e+02 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Q 039646 24 IVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 24 IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
+++++++..++.-++-|.-....
T Consensus 9 ~ICVaii~lIlY~iYnr~~~~q~ 31 (68)
T PF05961_consen 9 IICVAIIGLILYGIYNRKKTTQN 31 (68)
T ss_pred HHHHHHHHHHHHHHHhcccccCC
Confidence 33333333444455555555543
No 270
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=20.42 E-value=1.4e+02 Score=25.35 Aligned_cols=18 Identities=17% Similarity=0.469 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039646 24 IVAVVFFIFGLVHLLIRY 41 (325)
Q Consensus 24 IL~vv~~ii~ll~ll~r~ 41 (325)
+++++.+|+++.+++.|+
T Consensus 25 L~lVl~lI~~~aWLlkR~ 42 (124)
T PRK11486 25 LIGIIALILAAAWLVKRL 42 (124)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 333344444444555554
No 271
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.39 E-value=2.1e+02 Score=21.71 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=11.6
Q ss_pred CchhHhhHHHHHHHHHHHHHHHHHHHH
Q 039646 13 RISPVLLLILVIVAVVFFIFGLVHLLI 39 (325)
Q Consensus 13 ~isp~iliIi~IL~vv~~ii~ll~ll~ 39 (325)
+++|-..+++++.+++-+++.+...++
T Consensus 53 P~~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 53 PVSPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 444544444444444333334444333
No 272
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=20.23 E-value=1.4e+02 Score=24.56 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=14.2
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHH
Q 039646 15 SPVLLLILVIVAVVFFIFGLVHLLIR 40 (325)
Q Consensus 15 sp~iliIi~IL~vv~~ii~ll~ll~r 40 (325)
.|++||....+++++++++.+-+|+.
T Consensus 66 ~~F~L~~~~ti~lv~~~~~~I~lL~s 91 (103)
T PF12955_consen 66 VPFWLFAGFTIALVVLVAGAIGLLFS 91 (103)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555543
Done!