Query 039646
Match_columns 325
No_of_seqs 384 out of 1948
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 20:22:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.3E-16 4.6E-21 125.3 7.0 77 72-149 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.7E-16 5.7E-21 119.9 4.4 70 80-150 4-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 8.7E-15 3E-19 103.6 4.6 52 97-148 3-54 (55)
4 2ect_A Ring finger protein 126 99.5 2E-14 6.9E-19 109.0 5.4 58 96-154 12-69 (78)
5 2ep4_A Ring finger protein 24; 99.5 3.9E-14 1.3E-18 106.3 6.5 55 95-150 11-65 (74)
6 2kiz_A E3 ubiquitin-protein li 99.5 5.2E-14 1.8E-18 104.2 6.1 54 96-150 11-64 (69)
7 1v87_A Deltex protein 2; ring- 99.4 4.3E-13 1.5E-17 108.7 6.6 52 98-150 24-95 (114)
8 2ecl_A Ring-box protein 2; RNF 99.4 1.3E-13 4.4E-18 106.1 2.7 52 98-149 14-76 (81)
9 2ecm_A Ring finger and CHY zin 99.4 4.5E-13 1.5E-17 94.6 4.5 50 98-148 4-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.3 4.7E-13 1.6E-17 99.2 4.3 54 97-151 8-65 (71)
11 2ea6_A Ring finger protein 4; 99.3 5.7E-13 2E-17 97.9 4.7 53 96-149 12-68 (69)
12 2ecn_A Ring finger protein 141 99.3 6.5E-13 2.2E-17 98.5 3.9 52 95-151 11-62 (70)
13 2xeu_A Ring finger protein 4; 99.3 6.3E-13 2.1E-17 96.3 3.5 52 98-150 2-57 (64)
14 3dpl_R Ring-box protein 1; ubi 99.3 1.2E-12 3.9E-17 106.3 5.1 50 98-148 36-100 (106)
15 2djb_A Polycomb group ring fin 99.3 2.7E-12 9.1E-17 96.0 5.2 54 95-151 11-64 (72)
16 2d8t_A Dactylidin, ring finger 99.3 2.8E-12 9.6E-17 95.6 4.5 50 97-150 13-62 (71)
17 2ct2_A Tripartite motif protei 99.3 5.8E-12 2E-16 96.9 6.4 55 95-150 11-69 (88)
18 1chc_A Equine herpes virus-1 r 99.2 5E-12 1.7E-16 93.1 4.7 49 98-149 4-52 (68)
19 2yur_A Retinoblastoma-binding 99.2 6.8E-12 2.3E-16 94.4 5.0 54 95-151 11-66 (74)
20 2ysl_A Tripartite motif-contai 99.2 1.1E-11 3.8E-16 92.3 5.9 53 95-151 16-71 (73)
21 2d8s_A Cellular modulator of i 99.2 7.8E-12 2.7E-16 96.4 4.6 53 97-151 13-72 (80)
22 2csy_A Zinc finger protein 183 99.2 1.1E-11 3.7E-16 94.6 5.0 49 96-148 12-60 (81)
23 2ecy_A TNF receptor-associated 99.2 1.1E-11 3.8E-16 91.0 4.3 52 95-150 11-63 (66)
24 1t1h_A Gspef-atpub14, armadill 99.2 1.6E-11 5.6E-16 92.7 5.0 52 96-151 5-57 (78)
25 4ayc_A E3 ubiquitin-protein li 99.2 1.1E-11 3.6E-16 104.4 4.3 49 98-150 52-100 (138)
26 2ecw_A Tripartite motif-contai 99.2 2E-11 6.9E-16 92.8 5.2 53 95-151 15-73 (85)
27 4a0k_B E3 ubiquitin-protein li 99.2 2.8E-12 9.6E-17 105.9 0.3 50 98-148 47-111 (117)
28 2ecv_A Tripartite motif-contai 99.2 2.5E-11 8.5E-16 92.3 5.6 55 95-153 15-75 (85)
29 2egp_A Tripartite motif-contai 99.2 7.8E-12 2.7E-16 94.4 2.1 53 95-151 8-67 (79)
30 2ct0_A Non-SMC element 1 homol 99.1 4.2E-11 1.4E-15 91.1 5.7 51 98-151 14-66 (74)
31 3lrq_A E3 ubiquitin-protein li 99.1 3.2E-11 1.1E-15 96.1 3.8 51 97-151 20-72 (100)
32 4ap4_A E3 ubiquitin ligase RNF 99.1 3.5E-11 1.2E-15 98.7 3.8 54 97-151 5-62 (133)
33 2ysj_A Tripartite motif-contai 99.1 8.4E-11 2.9E-15 85.3 5.0 45 95-143 16-63 (63)
34 2y43_A E3 ubiquitin-protein li 99.1 5.2E-11 1.8E-15 94.2 3.7 49 98-150 21-70 (99)
35 2ckl_A Polycomb group ring fin 99.1 4.9E-11 1.7E-15 95.9 3.3 51 96-150 12-63 (108)
36 3fl2_A E3 ubiquitin-protein li 99.1 1.2E-10 3.9E-15 96.0 5.4 49 97-149 50-99 (124)
37 1g25_A CDK-activating kinase a 99.0 1.3E-10 4.5E-15 84.9 4.6 53 98-151 2-57 (65)
38 3ztg_A E3 ubiquitin-protein li 99.0 1.1E-10 3.8E-15 90.8 4.3 51 95-148 9-61 (92)
39 2ecj_A Tripartite motif-contai 99.0 1.4E-10 4.7E-15 82.4 3.9 45 95-143 11-58 (58)
40 4ap4_A E3 ubiquitin ligase RNF 99.0 1.4E-10 4.7E-15 95.1 3.9 53 97-150 70-126 (133)
41 1jm7_A BRCA1, breast cancer ty 99.0 1.8E-10 6E-15 92.5 4.0 51 99-153 21-74 (112)
42 3hct_A TNF receptor-associated 99.0 1.8E-10 6.2E-15 94.1 3.5 52 95-150 14-66 (118)
43 1z6u_A NP95-like ring finger p 99.0 4.3E-10 1.5E-14 96.2 5.2 50 97-150 76-126 (150)
44 2ckl_B Ubiquitin ligase protei 99.0 3.1E-10 1.1E-14 97.8 4.3 49 98-149 53-102 (165)
45 2kr4_A Ubiquitin conjugation f 99.0 3.6E-10 1.2E-14 87.7 4.1 51 96-150 11-61 (85)
46 2kre_A Ubiquitin conjugation f 99.0 4.6E-10 1.6E-14 89.8 4.6 52 96-151 26-77 (100)
47 1e4u_A Transcriptional repress 98.9 8.1E-10 2.8E-14 84.6 5.6 57 95-152 7-65 (78)
48 1wgm_A Ubiquitin conjugation f 98.9 6.7E-10 2.3E-14 88.6 4.7 52 96-151 19-71 (98)
49 1rmd_A RAG1; V(D)J recombinati 98.9 7E-10 2.4E-14 90.1 4.1 50 98-151 22-72 (116)
50 3l11_A E3 ubiquitin-protein li 98.9 3.3E-10 1.1E-14 91.9 1.6 48 98-149 14-62 (115)
51 2vje_A E3 ubiquitin-protein li 98.8 1.3E-09 4.6E-14 80.0 3.2 47 98-148 7-56 (64)
52 3knv_A TNF receptor-associated 98.8 1.1E-09 3.7E-14 92.8 2.6 51 96-150 28-79 (141)
53 1jm7_B BARD1, BRCA1-associated 98.8 1.2E-09 4.2E-14 89.0 2.2 48 97-150 20-68 (117)
54 2y1n_A E3 ubiquitin-protein li 98.8 2.2E-09 7.6E-14 104.8 4.3 48 99-150 332-380 (389)
55 1bor_A Transcription factor PM 98.8 1.3E-09 4.4E-14 77.8 2.0 48 97-151 4-51 (56)
56 2vje_B MDM4 protein; proto-onc 98.7 4.4E-09 1.5E-13 77.0 3.1 46 99-148 7-55 (63)
57 2c2l_A CHIP, carboxy terminus 98.7 4.9E-09 1.7E-13 96.1 3.5 52 96-151 205-257 (281)
58 2yu4_A E3 SUMO-protein ligase 98.7 4.1E-09 1.4E-13 83.0 2.4 52 96-150 4-64 (94)
59 3hcs_A TNF receptor-associated 98.7 6.8E-09 2.3E-13 89.7 3.6 52 95-150 14-66 (170)
60 4ic3_A E3 ubiquitin-protein li 98.7 5E-09 1.7E-13 78.9 2.2 44 98-149 23-67 (74)
61 3k1l_B Fancl; UBC, ring, RWD, 98.6 6.6E-09 2.3E-13 99.6 1.4 54 97-150 306-374 (381)
62 2f42_A STIP1 homology and U-bo 98.6 1.8E-08 6.1E-13 88.8 3.0 53 95-151 102-155 (179)
63 1wim_A KIAA0161 protein; ring 98.5 4.3E-08 1.5E-12 76.8 3.6 48 98-146 4-61 (94)
64 2ecg_A Baculoviral IAP repeat- 98.5 3.9E-08 1.3E-12 74.0 2.9 43 99-149 25-68 (75)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.4 8.6E-08 3E-12 69.7 3.2 48 97-148 4-58 (60)
66 2ea5_A Cell growth regulator w 98.4 1.1E-07 3.7E-12 70.7 3.7 45 97-149 13-58 (68)
67 2yho_A E3 ubiquitin-protein li 98.4 8.3E-08 2.8E-12 73.3 1.9 43 99-149 18-61 (79)
68 2bay_A PRE-mRNA splicing facto 98.3 1.9E-07 6.4E-12 68.1 2.9 50 100-152 4-53 (61)
69 3htk_C E3 SUMO-protein ligase 98.3 3.6E-07 1.2E-11 84.8 3.5 53 96-151 178-234 (267)
70 3t6p_A Baculoviral IAP repeat- 98.3 2.1E-07 7.1E-12 89.8 1.7 45 97-149 293-338 (345)
71 3nw0_A Non-structural maintena 97.9 1.1E-05 3.9E-10 73.8 5.9 52 98-152 179-232 (238)
72 3vk6_A E3 ubiquitin-protein li 97.8 1.1E-05 3.8E-10 64.2 3.9 46 101-149 3-49 (101)
73 2ko5_A Ring finger protein Z; 96.0 0.0051 1.7E-07 48.3 3.7 52 95-151 24-75 (99)
74 2lri_C Autoimmune regulator; Z 93.6 0.06 2.1E-06 39.4 3.7 46 98-147 11-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 93.2 0.055 1.9E-06 41.9 3.2 35 98-133 2-36 (101)
76 2l5u_A Chromodomain-helicase-D 89.6 0.25 8.7E-06 35.2 3.2 46 97-146 9-58 (61)
77 1we9_A PHD finger family prote 87.0 0.16 5.5E-06 36.3 0.7 50 97-146 4-58 (64)
78 1f62_A Transcription factor WS 86.7 0.35 1.2E-05 32.9 2.3 44 101-145 2-49 (51)
79 3m62_A Ubiquitin conjugation f 84.8 0.52 1.8E-05 50.7 3.5 52 96-151 888-940 (968)
80 3o36_A Transcription intermedi 84.1 0.29 9.8E-06 42.3 1.0 45 99-147 4-52 (184)
81 3lqh_A Histone-lysine N-methyl 83.8 0.4 1.4E-05 41.8 1.8 47 100-146 3-63 (183)
82 3u5n_A E3 ubiquitin-protein li 83.7 0.29 9.9E-06 43.1 0.8 46 98-147 6-55 (207)
83 1mm2_A MI2-beta; PHD, zinc fin 83.4 0.28 9.4E-06 35.0 0.5 47 97-147 7-57 (61)
84 1wil_A KIAA1045 protein; ring 82.8 0.97 3.3E-05 34.7 3.3 35 97-133 13-47 (89)
85 2yql_A PHD finger protein 21A; 82.1 0.23 7.8E-06 34.7 -0.4 45 97-145 7-55 (56)
86 3v43_A Histone acetyltransfera 81.7 0.44 1.5E-05 38.0 1.1 45 101-145 63-111 (112)
87 1fp0_A KAP-1 corepressor; PHD 80.9 1.3 4.3E-05 34.2 3.4 46 97-146 23-72 (88)
88 2puy_A PHD finger protein 21A; 80.9 0.22 7.4E-06 35.3 -0.9 48 98-149 4-55 (60)
89 2k16_A Transcription initiatio 80.2 0.55 1.9E-05 34.5 1.1 51 98-149 17-71 (75)
90 1xwh_A Autoimmune regulator; P 79.2 0.61 2.1E-05 33.7 1.1 46 97-146 6-55 (66)
91 1wev_A Riken cDNA 1110020M19; 76.8 0.57 2E-05 35.9 0.3 51 99-149 16-75 (88)
92 1wep_A PHF8; structural genomi 75.8 2.4 8.1E-05 31.5 3.5 49 98-147 11-64 (79)
93 2knc_A Integrin alpha-IIB; tra 75.7 8.5 0.00029 26.9 6.1 26 15-40 10-35 (54)
94 2e6r_A Jumonji/ARID domain-con 75.1 0.41 1.4E-05 37.1 -0.9 50 97-147 14-67 (92)
95 2ku3_A Bromodomain-containing 74.8 1.3 4.4E-05 32.6 1.8 50 97-146 14-66 (71)
96 2ysm_A Myeloid/lymphoid or mix 74.5 0.96 3.3E-05 35.7 1.1 47 97-144 5-55 (111)
97 2l43_A N-teminal domain from h 74.5 0.92 3.2E-05 34.8 1.0 53 97-149 23-78 (88)
98 2kgg_A Histone demethylase jar 73.1 3.1 0.0001 28.4 3.3 44 101-144 4-52 (52)
99 2lv9_A Histone-lysine N-methyl 72.5 1.1 3.9E-05 34.8 1.1 44 100-145 29-75 (98)
100 2ro1_A Transcription intermedi 72.3 0.82 2.8E-05 39.8 0.2 43 100-146 3-49 (189)
101 2vpb_A Hpygo1, pygopus homolog 72.2 3 0.0001 30.1 3.2 34 98-131 7-41 (65)
102 2l8s_A Integrin alpha-1; trans 71.7 4.4 0.00015 28.4 3.8 26 15-40 7-32 (54)
103 1afo_A Glycophorin A; integral 71.1 6 0.00021 25.8 4.0 29 16-44 11-39 (40)
104 3shb_A E3 ubiquitin-protein li 69.5 0.76 2.6E-05 34.5 -0.5 44 101-145 28-76 (77)
105 2ri7_A Nucleosome-remodeling f 69.0 1.2 4.2E-05 37.7 0.6 48 98-146 7-59 (174)
106 2e6s_A E3 ubiquitin-protein li 68.6 1.2 4.2E-05 33.3 0.5 44 101-145 28-76 (77)
107 2yt5_A Metal-response element- 66.9 3 0.0001 29.6 2.3 51 97-147 4-62 (66)
108 2k1a_A Integrin alpha-IIB; sin 66.1 9.6 0.00033 25.2 4.4 27 14-40 7-33 (42)
109 1weu_A Inhibitor of growth fam 65.5 3.3 0.00011 32.0 2.3 45 97-146 34-85 (91)
110 1z60_A TFIIH basal transcripti 64.0 2.6 8.9E-05 30.0 1.4 43 100-143 16-58 (59)
111 1wew_A DNA-binding family prot 62.7 3.1 0.00011 30.9 1.7 48 98-147 15-73 (78)
112 3ask_A E3 ubiquitin-protein li 62.6 1.9 6.6E-05 38.8 0.6 44 101-145 176-224 (226)
113 2lbm_A Transcriptional regulat 62.6 8.5 0.00029 32.1 4.5 44 98-145 62-116 (142)
114 3asl_A E3 ubiquitin-protein li 62.0 1.7 5.9E-05 31.7 0.1 44 101-145 20-68 (70)
115 2xb1_A Pygopus homolog 2, B-ce 61.3 3.8 0.00013 32.3 2.0 47 100-146 4-61 (105)
116 3v43_A Histone acetyltransfera 60.3 14 0.00049 29.0 5.3 33 99-131 5-42 (112)
117 2cs3_A Protein C14ORF4, MY039 60.0 13 0.00043 28.3 4.6 39 97-136 13-52 (93)
118 1wen_A Inhibitor of growth fam 59.9 6.1 0.00021 28.9 2.8 46 97-147 14-66 (71)
119 2jo1_A Phospholemman; FXYD1, N 59.5 19 0.00064 26.5 5.3 26 20-45 18-43 (72)
120 2l2t_A Receptor tyrosine-prote 59.3 15 0.00053 24.5 4.4 36 12-47 7-42 (44)
121 1wem_A Death associated transc 57.8 3.8 0.00013 30.0 1.4 46 99-146 16-70 (76)
122 4gne_A Histone-lysine N-methyl 55.9 9.6 0.00033 30.2 3.6 49 96-150 12-66 (107)
123 1joc_A EEA1, early endosomal a 55.9 6 0.00021 32.1 2.4 34 99-132 69-102 (125)
124 1iij_A ERBB-2 receptor protein 55.8 6.1 0.00021 25.2 1.9 30 15-45 5-34 (35)
125 2kwj_A Zinc finger protein DPF 55.7 1 3.5E-05 36.0 -2.2 47 101-148 60-110 (114)
126 2jp3_A FXYD domain-containing 55.7 8 0.00027 28.2 2.8 26 20-45 19-44 (67)
127 2ysm_A Myeloid/lymphoid or mix 55.6 1.9 6.4E-05 34.0 -0.7 45 101-146 56-104 (111)
128 1weo_A Cellulose synthase, cat 55.4 15 0.0005 28.4 4.3 52 98-149 15-70 (93)
129 1z2q_A LM5-1; membrane protein 55.4 8.4 0.00029 28.8 3.0 36 98-133 20-55 (84)
130 2ks1_B Epidermal growth factor 55.4 12 0.0004 25.1 3.3 29 18-46 14-42 (44)
131 1wfk_A Zinc finger, FYVE domai 55.2 7.6 0.00026 29.5 2.8 53 97-149 7-66 (88)
132 1wee_A PHD finger family prote 54.9 1.8 6.1E-05 31.6 -0.8 48 98-146 15-66 (72)
133 3t7l_A Zinc finger FYVE domain 54.4 6.9 0.00024 29.8 2.4 36 99-134 20-55 (90)
134 2yw8_A RUN and FYVE domain-con 54.4 8.1 0.00028 28.8 2.8 36 98-133 18-53 (82)
135 1vfy_A Phosphatidylinositol-3- 53.5 8.8 0.0003 27.9 2.8 33 100-132 12-44 (73)
136 1x4u_A Zinc finger, FYVE domai 53.4 9.2 0.00032 28.6 2.9 33 98-130 13-45 (84)
137 2knc_B Integrin beta-3; transm 52.9 15 0.0005 27.5 4.0 21 22-42 15-35 (79)
138 1dvp_A HRS, hepatocyte growth 52.8 6.2 0.00021 34.7 2.2 35 98-132 160-194 (220)
139 3ql9_A Transcriptional regulat 51.9 19 0.00066 29.4 4.9 44 98-145 56-110 (129)
140 1y02_A CARP2, FYVE-ring finger 51.5 2 6.7E-05 35.0 -1.2 48 100-147 20-67 (120)
141 3zyq_A Hepatocyte growth facto 50.9 7.1 0.00024 34.7 2.3 36 98-133 163-198 (226)
142 1zbd_B Rabphilin-3A; G protein 50.1 8.4 0.00029 31.7 2.4 50 97-146 53-107 (134)
143 3o70_A PHD finger protein 13; 50.0 3.7 0.00013 29.8 0.2 47 97-145 17-66 (68)
144 1x4k_A Skeletal muscle LIM-pro 49.5 13 0.00045 26.0 3.2 40 100-149 6-45 (72)
145 3i2d_A E3 SUMO-protein ligase 49.2 12 0.0004 36.1 3.6 48 100-150 250-301 (371)
146 1g47_A Pinch protein; LIM doma 48.4 17 0.00057 25.8 3.6 43 98-150 10-52 (77)
147 3c6w_A P28ING5, inhibitor of g 48.0 4.7 0.00016 28.4 0.5 43 98-145 8-57 (59)
148 4fo9_A E3 SUMO-protein ligase 47.8 12 0.0004 35.9 3.4 48 100-150 216-267 (360)
149 1wyh_A SLIM 2, skeletal muscle 47.5 16 0.00056 25.5 3.4 40 100-149 6-45 (72)
150 3mpx_A FYVE, rhogef and PH dom 47.2 4 0.00014 39.1 0.0 49 99-147 375-430 (434)
151 1x61_A Thyroid receptor intera 47.1 20 0.00069 25.0 3.9 40 99-148 5-44 (72)
152 2vnf_A ING 4, P29ING4, inhibit 45.7 5 0.00017 28.3 0.3 43 98-145 9-58 (60)
153 1x4l_A Skeletal muscle LIM-pro 45.3 19 0.00066 25.2 3.5 41 99-149 5-47 (72)
154 2ww9_C Protein transport prote 44.4 11 0.00039 28.8 2.2 30 10-41 55-84 (87)
155 2cu8_A Cysteine-rich protein 2 44.3 15 0.00053 26.1 2.9 40 99-149 9-48 (76)
156 2jwa_A Receptor tyrosine-prote 44.0 28 0.00096 23.2 3.8 31 14-45 11-41 (44)
157 2kwj_A Zinc finger protein DPF 43.5 16 0.00053 28.9 3.0 33 101-133 3-41 (114)
158 1x63_A Skeletal muscle LIM-pro 43.2 20 0.00069 25.7 3.4 40 100-149 16-55 (82)
159 2l6w_A Beta-type platelet-deri 48.2 5.4 0.00018 26.0 0.0 17 23-39 13-29 (39)
160 2k1k_A Ephrin type-A receptor 42.1 55 0.0019 21.0 4.9 22 18-39 14-35 (38)
161 2rsd_A E3 SUMO-protein ligase 41.5 3 0.0001 30.0 -1.4 46 99-145 10-64 (68)
162 2dj7_A Actin-binding LIM prote 41.1 20 0.00069 26.0 3.1 40 98-148 14-53 (80)
163 1x68_A FHL5 protein; four-and- 41.1 23 0.00079 25.2 3.4 39 100-148 6-46 (76)
164 2k9j_B Integrin beta-3; transm 40.9 46 0.0016 21.9 4.5 26 18-43 10-35 (43)
165 2wwb_C SEC61BETA, protein tran 40.7 19 0.00065 28.0 3.0 22 10-31 64-85 (96)
166 2ct7_A Ring finger protein 31; 38.6 3.3 0.00011 31.2 -1.7 28 116-143 44-73 (86)
167 1iml_A CRIP, cysteine rich int 38.1 16 0.00056 25.9 2.1 38 101-149 2-39 (76)
168 3mjh_B Early endosome antigen 37.4 2.8 9.5E-05 26.6 -1.9 14 99-112 5-18 (34)
169 3f6q_B LIM and senescent cell 37.2 23 0.00077 24.5 2.8 42 99-150 11-52 (72)
170 2g6q_A Inhibitor of growth pro 34.9 10 0.00035 26.9 0.5 44 97-145 9-59 (62)
171 2co8_A NEDD9 interacting prote 34.0 29 0.00098 25.2 3.0 42 98-150 14-55 (82)
172 2jmo_A Parkin; IBR, E3 ligase, 33.5 3.9 0.00013 30.5 -2.0 14 120-133 55-68 (80)
173 2l9u_A Receptor tyrosine-prote 33.0 87 0.003 19.9 4.5 27 18-44 9-35 (40)
174 1afo_A Glycophorin A; integral 32.6 67 0.0023 20.9 4.0 26 19-44 11-36 (40)
175 2l3k_A Rhombotin-2, linker, LI 32.1 19 0.00063 28.4 1.7 37 101-147 10-46 (123)
176 1x62_A C-terminal LIM domain p 31.1 34 0.0011 24.5 2.9 40 98-149 14-53 (79)
177 2jne_A Hypothetical protein YF 30.8 18 0.00061 28.4 1.3 40 100-148 33-72 (101)
178 2o35_A Hypothetical protein DU 30.8 18 0.00062 28.4 1.4 13 124-136 42-54 (105)
179 3fyb_A Protein of unknown func 30.7 18 0.00063 28.4 1.4 12 124-135 41-52 (104)
180 2egq_A FHL1 protein; LIM domai 30.7 38 0.0013 23.8 3.1 40 100-149 16-58 (77)
181 1a7i_A QCRP2 (LIM1); LIM domai 30.4 20 0.0007 25.7 1.6 41 99-150 7-47 (81)
182 2cup_A Skeletal muscle LIM-pro 30.2 54 0.0019 24.3 4.1 38 100-147 6-43 (101)
183 3kqi_A GRC5, PHD finger protei 29.1 19 0.00066 26.2 1.2 45 101-146 12-61 (75)
184 2zxe_G FXYD10, phospholemman-l 28.9 21 0.00072 26.4 1.4 28 19-46 20-47 (74)
185 3kv5_D JMJC domain-containing 28.5 14 0.00047 36.8 0.4 47 99-146 37-88 (488)
186 2d8y_A Eplin protein; LIM doma 28.1 46 0.0016 24.4 3.3 41 99-150 15-55 (91)
187 2d8x_A Protein pinch; LIM doma 28.0 50 0.0017 22.8 3.3 40 99-150 5-44 (70)
188 2a20_A Regulating synaptic mem 27.8 6.7 0.00023 28.0 -1.4 49 96-145 6-59 (62)
189 3j1r_A Archaeal adhesion filam 27.8 90 0.0031 18.4 3.7 10 15-24 2-11 (26)
190 3o7a_A PHD finger protein 13 v 27.5 10 0.00034 25.7 -0.6 41 104-145 8-51 (52)
191 1x64_A Alpha-actinin-2 associa 27.0 53 0.0018 24.0 3.4 40 98-149 24-63 (89)
192 2knc_B Integrin beta-3; transm 26.8 87 0.003 23.2 4.5 34 12-45 8-41 (79)
193 2d8v_A Zinc finger FYVE domain 26.6 30 0.001 25.1 1.8 30 98-132 7-37 (67)
194 2l4z_A DNA endonuclease RBBP8, 26.6 35 0.0012 27.0 2.5 39 99-148 61-99 (123)
195 1rh5_C Secbeta; protein transl 26.4 77 0.0026 21.8 3.8 23 10-32 24-46 (53)
196 2lx0_A Membrane fusion protein 25.8 1E+02 0.0035 18.5 3.8 14 31-44 18-31 (32)
197 2d8z_A Four and A half LIM dom 25.8 55 0.0019 22.5 3.2 38 100-149 6-43 (70)
198 2jmi_A Protein YNG1, ING1 homo 25.7 17 0.00057 27.9 0.3 44 97-145 24-75 (90)
199 2ehe_A Four and A half LIM dom 24.8 37 0.0012 24.3 2.1 40 100-149 16-55 (82)
200 2dar_A PDZ and LIM domain prot 24.6 43 0.0015 24.5 2.5 40 98-149 24-63 (90)
201 2pk7_A Uncharacterized protein 24.2 19 0.00066 26.2 0.4 19 131-149 2-20 (69)
202 2k21_A Potassium voltage-gated 24.1 1.5E+02 0.0053 24.2 5.8 29 17-45 53-81 (138)
203 1v6g_A Actin binding LIM prote 23.7 50 0.0017 23.6 2.7 38 100-149 16-53 (81)
204 2kpi_A Uncharacterized protein 23.2 47 0.0016 23.0 2.3 15 97-111 8-22 (56)
205 1rut_X Flinc4, fusion protein 22.9 45 0.0015 28.1 2.6 27 122-148 54-80 (188)
206 2cor_A Pinch protein; LIM doma 22.8 50 0.0017 23.7 2.5 41 98-150 14-54 (79)
207 2zet_C Melanophilin; complex, 22.6 36 0.0012 28.5 1.9 47 98-146 67-117 (153)
208 2iyb_E Testin, TESS, TES; LIM 22.6 50 0.0017 22.6 2.4 39 101-149 4-44 (65)
209 1nyp_A Pinch protein; LIM doma 21.8 51 0.0018 22.4 2.3 38 100-149 6-43 (66)
210 2xjy_A Rhombotin-2; oncoprotei 21.0 73 0.0025 24.8 3.4 50 98-149 28-78 (131)
211 2gmg_A Hypothetical protein PF 21.0 25 0.00085 27.8 0.5 25 120-149 72-96 (105)
212 2cur_A Skeletal muscle LIM-pro 20.9 93 0.0032 21.2 3.6 37 100-148 6-42 (69)
213 2jny_A Uncharacterized BCR; st 20.8 19 0.00065 26.1 -0.2 19 131-149 4-22 (67)
214 1m3v_A FLIN4, fusion of the LI 20.7 77 0.0026 24.6 3.4 49 100-150 33-82 (122)
215 2jrp_A Putative cytoplasmic pr 20.2 49 0.0017 24.9 2.0 39 100-147 3-41 (81)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=125.35 Aligned_cols=77 Identities=31% Similarity=0.720 Sum_probs=67.6
Q ss_pred hcCCCCCHHHHhhCCceeeecccC-CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 72 LHDSGLDQSLIDALPMFYYKDIVG-LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 72 ~~~~g~~~~~i~~Lp~~~~~~~~~-~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
....+++++.|+.||.+.+..... ..+...|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+.+..
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345789999999999998876543 456678999999999999999999 99999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-16 Score=119.94 Aligned_cols=70 Identities=39% Similarity=0.898 Sum_probs=61.7
Q ss_pred HHHhhCCceeeecccCCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 80 SLIDALPMFYYKDIVGLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 80 ~~i~~Lp~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
+.++.||.+++.......+...|+||++.|..++.++.+| |+|.||..||.+|+..+.+||+||+++...
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3567899998887666667789999999999988899999 999999999999999999999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.51 E-value=8.7e-15 Score=103.62 Aligned_cols=52 Identities=50% Similarity=1.118 Sum_probs=46.9
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
.+..+|+||++.|..++.+..++.|+|.||..||.+|+..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567899999999998888888779999999999999999999999998764
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=2e-14 Score=108.97 Aligned_cols=58 Identities=33% Similarity=0.895 Sum_probs=50.9
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCCCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDNSL 154 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~~~ 154 (325)
..+...|+||++.|...+.++.++ |+|.||..||.+|+..+.+||+||+.+.......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 455678999999999888888898 9999999999999999999999999988765443
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.9e-14 Score=106.30 Aligned_cols=55 Identities=40% Similarity=0.817 Sum_probs=49.1
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
.......|+||++.|.....++.++ |+|.||..||.+|+..+.+||+||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 3455678999999999988888998 999999999999999999999999988653
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=5.2e-14 Score=104.20 Aligned_cols=54 Identities=37% Similarity=0.974 Sum_probs=48.4
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
......|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999998888899999 999999999999999999999999988764
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.38 E-value=4.3e-13 Score=108.68 Aligned_cols=52 Identities=29% Similarity=0.636 Sum_probs=42.1
Q ss_pred CCCcCceecccccCCC---------------ceeecCCCCceecHHHHHHHH-----hcCCCCCcccccccCC
Q 039646 98 EPFDCAVCLCEFSEHD---------------NLRLLPSCSHAFHITCIDTWL-----LSNSTCPLCRGTLSSS 150 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~---------------~~~~lp~C~H~FH~~CI~~Wl-----~~~~tCPlCR~~l~~~ 150 (325)
.+..|+||++.|.... .+++++ |+|.||..||..|+ ..+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4468999999996643 334677 99999999999999 4567899999988654
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-13 Score=106.14 Aligned_cols=52 Identities=31% Similarity=0.779 Sum_probs=41.8
Q ss_pred CCCcCceecccccC-----------CCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSE-----------HDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~-----------~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
++..|+||+++|.. ++.++.++.|+|.||..||.+||..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 34568888887753 45466665699999999999999999999999998754
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.36 E-value=4.5e-13 Score=94.58 Aligned_cols=50 Identities=34% Similarity=0.777 Sum_probs=43.0
Q ss_pred CCCcCceecccccCCC-ceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 98 EPFDCAVCLCEFSEHD-NLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
+...|+||++.|...+ .++.++ |+|.||..||.+|+..+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4568999999996543 467777 9999999999999999999999998764
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.35 E-value=4.7e-13 Score=99.18 Aligned_cols=54 Identities=26% Similarity=0.632 Sum_probs=45.9
Q ss_pred CCCCcCceecccccCC----CceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 97 KEPFDCAVCLCEFSEH----DNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
.+...|+||++.|... +.++.++ |||.||..||.+|+..+.+||+||+.+....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 4567899999998653 4457777 9999999999999999999999999987654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.7e-13 Score=97.91 Aligned_cols=53 Identities=26% Similarity=0.630 Sum_probs=44.8
Q ss_pred CCCCCcCceecccccCC----CceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 96 LKEPFDCAVCLCEFSEH----DNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
..+...|+||++.|... ..+..++ |+|.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 45667899999998763 3446777 99999999999999999999999998754
No 12
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.5e-13 Score=98.52 Aligned_cols=52 Identities=31% Similarity=0.880 Sum_probs=45.0
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
...+...|+||++.+.. +.++ |+|.||..||..|+..+.+||+||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 34567789999999866 6778 9999999999999999999999999887654
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.32 E-value=6.3e-13 Score=96.28 Aligned_cols=52 Identities=27% Similarity=0.646 Sum_probs=44.4
Q ss_pred CCCcCceecccccCC----CceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 98 EPFDCAVCLCEFSEH----DNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 98 ~~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
+...|+||++.|... +.+..++ |||.||..||.+|+..+.+||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456899999998753 4456777 999999999999999999999999988754
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.31 E-value=1.2e-12 Score=106.30 Aligned_cols=50 Identities=30% Similarity=0.653 Sum_probs=42.3
Q ss_pred CCCcCceecccccCCC---------------ceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 98 EPFDCAVCLCEFSEHD---------------NLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~---------------~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
++..|+||++.|...- .++.++ |+|.||..||.+||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4568999999997541 256677 9999999999999999999999999853
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.7e-12 Score=96.01 Aligned_cols=54 Identities=20% Similarity=0.508 Sum_probs=44.4
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
.+.+...|+||++.|.+ .+.+++ |+|.||..||..|+..+..||+||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 11 ELTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred hcCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 34566789999999876 233347 9999999999999999999999999887654
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.8e-12 Score=95.63 Aligned_cols=50 Identities=28% Similarity=0.605 Sum_probs=43.3
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
.+...|+||++.+.. .+.++ |+|.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 456789999999865 56778 999999999999999999999999988643
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.8e-12 Score=96.91 Aligned_cols=55 Identities=29% Similarity=0.749 Sum_probs=46.6
Q ss_pred CCCCCCcCceecccccCCCc-eeecCCCCceecHHHHHHHHhcC---CCCCcccccccCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDN-LRLLPSCSHAFHITCIDTWLLSN---STCPLCRGTLSSS 150 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~~---~tCPlCR~~l~~~ 150 (325)
...+...|+||++.|...+. ++.++ |||.||..||..|+..+ ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34567889999999987665 77888 99999999999999875 7899999987654
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.24 E-value=5e-12 Score=93.06 Aligned_cols=49 Identities=41% Similarity=0.863 Sum_probs=42.4
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
....|+||++.+.. .++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45679999999864 357788 99999999999999999999999998764
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.23 E-value=6.8e-12 Score=94.44 Aligned_cols=54 Identities=28% Similarity=0.642 Sum_probs=43.5
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcC--CCCCcccccccCCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN--STCPLCRGTLSSSD 151 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~l~~~~ 151 (325)
...+...|+||++.|.+ ++.++.|+|.||..||..|+..+ ..||+||+.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 11 PIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CSCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred cCCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34556789999999876 45566699999999999999865 68999999765543
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=92.31 Aligned_cols=53 Identities=26% Similarity=0.601 Sum_probs=43.8
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHh---cCCCCCcccccccCCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL---SNSTCPLCRGTLSSSD 151 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~~l~~~~ 151 (325)
...+...|+||++.|.. ++.++ |||.||..||..|+. ....||+||+.+....
T Consensus 16 ~~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred hCccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34567889999999875 66677 999999999999997 4567999999886543
No 21
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=7.8e-12 Score=96.43 Aligned_cols=53 Identities=28% Similarity=0.742 Sum_probs=44.0
Q ss_pred CCCCcCceecccccCCCceeecCCCC-----ceecHHHHHHHHhcC--CCCCcccccccCCC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCS-----HAFHITCIDTWLLSN--STCPLCRGTLSSSD 151 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~~--~tCPlCR~~l~~~~ 151 (325)
.+...|.||+++|..++.+ ++| |+ |.||..||++||..+ .+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3456899999999877665 688 96 999999999999865 48999999987543
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=94.62 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=42.9
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
......|+||++.|.. +.+++ |+|.||..||..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3456789999999865 55788 9999999999999999899999999885
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=90.98 Aligned_cols=52 Identities=19% Similarity=0.600 Sum_probs=42.7
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHh-cCCCCCcccccccCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-SNSTCPLCRGTLSSS 150 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~~ 150 (325)
...+...|+||++.+... ..++ |||.||..||..|+. ....||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 345677899999998763 4467 999999999999995 567899999988654
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.18 E-value=1.6e-11 Score=92.74 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=44.5
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-CCCCCcccccccCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSSSD 151 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~ 151 (325)
..+...|+||++.|.+ ++.++ |||.||..||..|+.. +.+||+||..+....
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 4567889999999866 56778 9999999999999987 778999999887653
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.18 E-value=1.1e-11 Score=104.36 Aligned_cols=49 Identities=33% Similarity=0.838 Sum_probs=42.8
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
++..|+||++.|.. ++++| |||.||..||..|+..+.+||+||+++...
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34679999999865 67788 999999999999999999999999988543
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=2e-11 Score=92.85 Aligned_cols=53 Identities=30% Similarity=0.610 Sum_probs=44.3
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc------CCCCCcccccccCCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS------NSTCPLCRGTLSSSD 151 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~l~~~~ 151 (325)
...+...|+||++.|.. ...++ |+|.||..||..|+.. ...||+||..+....
T Consensus 15 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCCTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred hCccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 34567889999999866 44778 9999999999999987 667999999887643
No 27
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.17 E-value=2.8e-12 Score=105.85 Aligned_cols=50 Identities=30% Similarity=0.692 Sum_probs=1.0
Q ss_pred CCCcCceecccccCC-------------C--ceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 98 EPFDCAVCLCEFSEH-------------D--NLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 98 ~~~~C~ICle~~~~~-------------~--~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
.+..|+||+++|... + .+..++ |+|.||..||.+||..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 456899999999652 1 223345 9999999999999999999999999754
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.5e-11 Score=92.34 Aligned_cols=55 Identities=27% Similarity=0.634 Sum_probs=45.4
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc------CCCCCcccccccCCCCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS------NSTCPLCRGTLSSSDNS 153 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~l~~~~~~ 153 (325)
...+...|+||++.|.. +..++ |+|.||..||..|+.. ...||+||..+......
T Consensus 15 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred HccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 34567889999999865 45677 9999999999999987 77899999998765433
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=7.8e-12 Score=94.41 Aligned_cols=53 Identities=28% Similarity=0.588 Sum_probs=44.1
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-------CCCCCcccccccCCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-------NSTCPLCRGTLSSSD 151 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-------~~tCPlCR~~l~~~~ 151 (325)
...+...|+||++.|.. ++.++ |||.||..||..|+.. ...||+||..+....
T Consensus 8 ~~~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 8 NVQEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hcccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 34567889999999866 45678 9999999999999986 567999999887643
No 30
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=4.2e-11 Score=91.10 Aligned_cols=51 Identities=20% Similarity=0.542 Sum_probs=41.7
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcC--CCCCcccccccCCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN--STCPLCRGTLSSSD 151 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~l~~~~ 151 (325)
....|+||++.|..++... .|+|.||..||.+||+.+ .+||+||+++....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3467999999998654333 499999999999999987 78999998876543
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.11 E-value=3.2e-11 Score=96.05 Aligned_cols=51 Identities=33% Similarity=0.833 Sum_probs=42.8
Q ss_pred CCCCcCceecccccCCCceee-cCCCCceecHHHHHHHHhcC-CCCCcccccccCCC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRL-LPSCSHAFHITCIDTWLLSN-STCPLCRGTLSSSD 151 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~-lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~l~~~~ 151 (325)
.+...|+||++.|.. ++. ++ |||.||..||..|+... .+||+||..+....
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 345789999999865 555 77 99999999999999987 68999999986543
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=3.5e-11 Score=98.73 Aligned_cols=54 Identities=26% Similarity=0.632 Sum_probs=45.7
Q ss_pred CCCCcCceecccccCC----CceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 97 KEPFDCAVCLCEFSEH----DNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
.+...|+||++.|... +.++.++ |||.||..||.+|+..+.+||+||+.+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3567899999999763 4457788 9999999999999999999999999886543
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=8.4e-11 Score=85.33 Aligned_cols=45 Identities=31% Similarity=0.668 Sum_probs=38.1
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHh---cCCCCCcc
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL---SNSTCPLC 143 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCPlC 143 (325)
...+...|+||++.|.+ ++.++ |||.||..||..|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45567889999999875 56677 999999999999998 45689998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.07 E-value=5.2e-11 Score=94.18 Aligned_cols=49 Identities=27% Similarity=0.709 Sum_probs=42.0
Q ss_pred CCCcCceecccccCCCceeec-CCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLL-PSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~l-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
+...|+||++.|.. ++.+ + |||.||..||..|+..+.+||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 45689999999875 4455 6 999999999999999989999999988753
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.07 E-value=4.9e-11 Score=95.91 Aligned_cols=51 Identities=27% Similarity=0.650 Sum_probs=43.3
Q ss_pred CCCCCcCceecccccCCCceeec-CCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLL-PSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~l-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
+.+...|+||++.|.+ ++.+ + |||.||..||..|+..+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID---ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSS---EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhC---cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3456789999999865 4455 7 999999999999999999999999988753
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=95.95 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=41.9
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC-CCCcccccccC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS-TCPLCRGTLSS 149 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l~~ 149 (325)
.+...|+||++.|.. ++.++ |||.||..||..|+..+. .||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345789999999875 66778 999999999999998544 89999999876
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=1.3e-10 Score=84.89 Aligned_cols=53 Identities=21% Similarity=0.557 Sum_probs=41.8
Q ss_pred CCCcCceecc-cccCCCce-eecCCCCceecHHHHHHHHhc-CCCCCcccccccCCC
Q 039646 98 EPFDCAVCLC-EFSEHDNL-RLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSSSD 151 (325)
Q Consensus 98 ~~~~C~ICle-~~~~~~~~-~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~ 151 (325)
++..|+||++ .|...... ..++ |||.||..||.+|+.. ...||+||+.+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3567999999 77765443 4566 9999999999999765 467999999886543
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=90.85 Aligned_cols=51 Identities=25% Similarity=0.632 Sum_probs=42.0
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcC--CCCCccccccc
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN--STCPLCRGTLS 148 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~l~ 148 (325)
.+.+...|+||++.|.+ ++.++.|||.||..||..|+... ..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34567889999999875 45666599999999999999753 58999999874
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=82.39 Aligned_cols=45 Identities=33% Similarity=0.840 Sum_probs=37.1
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHh---cCCCCCcc
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL---SNSTCPLC 143 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCPlC 143 (325)
...+...|+||++.+.. .+.++ |+|.||..||..|+. .+..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKE---PVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSS---CCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCc---cEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567789999999876 35677 999999999999954 56779998
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=1.4e-10 Score=95.13 Aligned_cols=53 Identities=26% Similarity=0.646 Sum_probs=44.6
Q ss_pred CCCCcCceecccccCC----CceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 97 KEPFDCAVCLCEFSEH----DNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
.+...|+||++.|... ..++.++ |||.||..||.+|+..+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4567899999998752 3346777 999999999999999999999999988654
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=1.8e-10 Score=92.54 Aligned_cols=51 Identities=25% Similarity=0.607 Sum_probs=42.0
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC---CCCcccccccCCCCC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS---TCPLCRGTLSSSDNS 153 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---tCPlCR~~l~~~~~~ 153 (325)
...|+||++.|.. +..++ |||.||..||..|+..+. .||+||..+......
T Consensus 21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 4579999999865 44577 999999999999998654 899999988765443
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.98 E-value=1.8e-10 Score=94.14 Aligned_cols=52 Identities=27% Similarity=0.630 Sum_probs=43.6
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC-CCCcccccccCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS-TCPLCRGTLSSS 150 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l~~~ 150 (325)
.+.+...|+||++.+.. ++.++ |||.||..||..|+.... +||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 34566789999999876 56677 999999999999998765 899999988653
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.96 E-value=4.3e-10 Score=96.21 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=42.7
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC-CCCcccccccCC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS-TCPLCRGTLSSS 150 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l~~~ 150 (325)
.+...|+||++.|.. ++.++ |||.||..||..|+.... .||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 345789999999866 56688 999999999999998754 799999998765
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.96 E-value=3.1e-10 Score=97.80 Aligned_cols=49 Identities=37% Similarity=0.697 Sum_probs=40.7
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-CCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~ 149 (325)
+...|+||++.|.. .+.+++ |||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45689999999876 233347 9999999999999997 7789999998854
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.96 E-value=3.6e-10 Score=87.66 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=45.3
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
..+.+.|+||++.|.+ +++++ |||.|+..||..|+..+.+||+||..+...
T Consensus 11 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4567899999999977 77888 999999999999999889999999988654
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.95 E-value=4.6e-10 Score=89.85 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=45.9
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
..+.+.|+||++.|.+ +++++ |||.|+..||..|+..+.+||+||.++....
T Consensus 26 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred CcHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 4567899999999977 77888 9999999999999998889999999887643
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.94 E-value=8.1e-10 Score=84.60 Aligned_cols=57 Identities=19% Similarity=0.438 Sum_probs=43.5
Q ss_pred CCCCCCcCceecccccCCCce-eecCCCCceecHHHHHHHHhc-CCCCCcccccccCCCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNL-RLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSSSDN 152 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~-~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~~ 152 (325)
...++..|+||++.+...+.. ..++ |||.||..|+..++.. ...||+||+.+.....
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 345678899999998654322 2245 9999999999998854 5679999999877544
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.93 E-value=6.7e-10 Score=88.57 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=45.7
Q ss_pred CCCCCcCceecccccCCCceeecCCCC-ceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCS-HAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
..+.+.|+||++.|.+ +++++ || |.|+..||..||..+.+||+||.++....
T Consensus 19 ~p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred CcHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 4567899999999977 67788 99 99999999999998889999999887643
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.90 E-value=7e-10 Score=90.10 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=42.4
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-CCCCCcccccccCCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSSSD 151 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~ 151 (325)
+...|+||++.|.+ +..++ |||.||..||..|+.. ..+||+||..+....
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 34679999999865 55677 9999999999999987 778999999887643
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.89 E-value=3.3e-10 Score=91.90 Aligned_cols=48 Identities=29% Similarity=0.715 Sum_probs=41.1
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-CCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~ 149 (325)
++..|+||++.|.. ++.++ |||.||..||..|+.. +..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45679999999875 56778 9999999999999986 6679999998864
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.84 E-value=1.3e-09 Score=79.98 Aligned_cols=47 Identities=21% Similarity=0.458 Sum_probs=39.5
Q ss_pred CCCcCceecccccCCCceeec--CCCCce-ecHHHHHHHHhcCCCCCccccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLL--PSCSHA-FHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~l--p~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
++..|+||++.+.+ +..+ | |||. |+..|+..|+..+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34579999998654 4444 8 9999 899999999998899999999874
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.82 E-value=1.1e-09 Score=92.84 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=42.6
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC-CCCcccccccCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS-TCPLCRGTLSSS 150 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~l~~~ 150 (325)
+.+...|+||++.|.. ++.++ |||.||..||..|+.... .||+||.++...
T Consensus 28 l~~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 4567889999999876 45677 999999999999998664 899999987543
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=1.2e-09 Score=89.02 Aligned_cols=48 Identities=23% Similarity=0.541 Sum_probs=40.4
Q ss_pred CCCCcCceecccccCCCceeec-CCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLL-PSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~l-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
.+...|+||++.|.. ++.+ + |||.||..||..|+. ..||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HHTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hhCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 345789999999865 4566 7 999999999999988 7899999998543
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.80 E-value=2.2e-09 Score=104.83 Aligned_cols=48 Identities=23% Similarity=0.733 Sum_probs=42.0
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHh-cCCCCCcccccccCC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-SNSTCPLCRGTLSSS 150 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~~ 150 (325)
...|+||++.+.. ++.+| |||.||..|+..|+. .+.+||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4689999999855 67888 999999999999998 688899999988654
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=1.3e-09 Score=77.77 Aligned_cols=48 Identities=25% Similarity=0.634 Sum_probs=39.7
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
.+...|+||++.|.. ++.++ |+|.||..||..| ...||+||+.+..+.
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 355789999999876 56788 9999999999884 668999999887543
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.73 E-value=4.4e-09 Score=76.97 Aligned_cols=46 Identities=15% Similarity=0.457 Sum_probs=38.4
Q ss_pred CCcCceecccccCCCceeec--CCCCce-ecHHHHHHHHhcCCCCCccccccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLL--PSCSHA-FHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~l--p~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
...|.||++.+.+ ..++ | |||. ||..|+..|...+..||+||+++.
T Consensus 7 ~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRD---GNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSC---EEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCC---eEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4579999997644 3344 8 9998 999999999988889999999874
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=4.9e-09 Score=96.09 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=43.8
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-CCCCCcccccccCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSSSD 151 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~~~ 151 (325)
....+.|+||++.|.+ ++++| |||.||..||..|+.. +.+||+||.++....
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 3457889999999977 77888 9999999999999986 445999999886543
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=4.1e-09 Score=83.01 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=41.7
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcC------CCCCc--cccc-ccCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN------STCPL--CRGT-LSSS 150 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~------~tCPl--CR~~-l~~~ 150 (325)
....+.|+||++.|.+ +++++.|||.|+..||..||..+ .+||+ |+.. +...
T Consensus 4 ~~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp CSSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CCcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 3456889999999976 66664499999999999999864 48999 9876 5443
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.69 E-value=6.8e-09 Score=89.68 Aligned_cols=52 Identities=27% Similarity=0.627 Sum_probs=43.5
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcC-CCCCcccccccCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN-STCPLCRGTLSSS 150 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~l~~~ 150 (325)
.+.+...|+||++.|.+ ++.++ |||.||..||..|+... .+||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 45567889999999876 46677 99999999999999864 4899999988653
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.68 E-value=5e-09 Score=78.86 Aligned_cols=44 Identities=23% Similarity=0.636 Sum_probs=37.6
Q ss_pred CCCcCceecccccCCCceeecCCCCce-ecHHHHHHHHhcCCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHA-FHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
+...|+||++.+.+ +..+| |||. ||..|+..| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 34579999998765 67788 9999 999999998 889999998754
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.62 E-value=6.6e-09 Score=99.65 Aligned_cols=54 Identities=24% Similarity=0.684 Sum_probs=41.0
Q ss_pred CCCCcCceecccccCCCcee----ecCCCCceecHHHHHHHHhcC-----------CCCCcccccccCC
Q 039646 97 KEPFDCAVCLCEFSEHDNLR----LLPSCSHAFHITCIDTWLLSN-----------STCPLCRGTLSSS 150 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~----~lp~C~H~FH~~CI~~Wl~~~-----------~tCPlCR~~l~~~ 150 (325)
.+..+|+||++.+..+..+. ..++|+|.||..||.+||+.. .+||.||+++..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 35668999999988733332 223599999999999999752 3599999988653
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.58 E-value=1.8e-08 Score=88.83 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=44.4
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcC-CCCCcccccccCCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN-STCPLCRGTLSSSD 151 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~l~~~~ 151 (325)
...+.+.|+||++.|.+ ++++| |||.|+..||..|+..+ .+||+||.++....
T Consensus 102 ~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 34567889999999976 77788 99999999999999864 57999999886543
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=4.3e-08 Score=76.77 Aligned_cols=48 Identities=21% Similarity=0.575 Sum_probs=39.7
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc--------CCCCCc--cccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS--------NSTCPL--CRGT 146 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCPl--CR~~ 146 (325)
+...|+||++++...+.+.+++ |+|.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999998766666667 9999999999999863 135999 9987
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=3.9e-08 Score=73.97 Aligned_cols=43 Identities=21% Similarity=0.626 Sum_probs=35.7
Q ss_pred CCcCceecccccCCCceeecCCCCce-ecHHHHHHHHhcCCCCCcccccccC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHA-FHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
...|+||++.+.. +..+| |||. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3469999998755 66788 9999 99999965 3789999998865
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.45 E-value=8.6e-08 Score=69.70 Aligned_cols=48 Identities=25% Similarity=0.646 Sum_probs=36.9
Q ss_pred CCCCcCceecccccCCCceeecCCCC--c---eecHHHHHHHHhc--CCCCCccccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCS--H---AFHITCIDTWLLS--NSTCPLCRGTLS 148 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~--H---~FH~~CI~~Wl~~--~~tCPlCR~~l~ 148 (325)
.+...|.||+++. ++.+ ++| |. | .||..||.+|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456799999873 2333 577 65 4 8999999999974 577999998764
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.1e-07 Score=70.67 Aligned_cols=45 Identities=31% Similarity=0.725 Sum_probs=37.4
Q ss_pred CCCCcCceecccccCCCceeecCCCCce-ecHHHHHHHHhcCCCCCcccccccC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHA-FHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
.+...|.||++.+.+ +..+| |+|. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 345689999998654 77889 9999 99999984 4789999998865
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.39 E-value=8.3e-08 Score=73.32 Aligned_cols=43 Identities=28% Similarity=0.693 Sum_probs=36.6
Q ss_pred CCcCceecccccCCCceeecCCCCce-ecHHHHHHHHhcCCCCCcccccccC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHA-FHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
...|+||++.+.+ +..+| |||. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 3579999998655 77888 9999 999999987 389999998865
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.35 E-value=1.9e-07 Score=68.07 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=42.3
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCCC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSDN 152 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~~ 152 (325)
+.|+||++.+.+ +++++.|||.|...||.+|+..+.+||+++.++...+.
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 679999999976 56662399999999999999988889999998876543
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.27 E-value=3.6e-07 Score=84.76 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=41.9
Q ss_pred CCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcC--CCCCc--ccccccCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN--STCPL--CRGTLSSSD 151 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCPl--CR~~l~~~~ 151 (325)
......|+||++.|.+ .++.+. |||.|+..||..|+..+ ..||+ ||+.+...+
T Consensus 178 ~~~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 178 GKIELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp SBCCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred CceeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 3456789999999966 233346 99999999999999864 46999 999876544
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.25 E-value=2.1e-07 Score=89.75 Aligned_cols=45 Identities=29% Similarity=0.795 Sum_probs=38.7
Q ss_pred CCCCcCceecccccCCCceeecCCCCce-ecHHHHHHHHhcCCCCCcccccccC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHA-FHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
.+...|+||++.+.. +..+| |||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 456789999999865 77788 9999 999999988 789999998753
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.90 E-value=1.1e-05 Score=73.81 Aligned_cols=52 Identities=19% Similarity=0.489 Sum_probs=40.5
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC--CCCcccccccCCCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS--TCPLCRGTLSSSDN 152 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCPlCR~~l~~~~~ 152 (325)
....|+||.+....+ . ..+.|+|.||..|+..|++.+. .||.|+.......+
T Consensus 179 ~i~~C~iC~~iv~~g--~-~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--Q-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSC--E-ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCC--c-ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 356799999988765 2 3344999999999999998654 79999987655433
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.83 E-value=1.1e-05 Score=64.21 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=37.3
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhc-CCCCCcccccccC
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-NSTCPLCRGTLSS 149 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~l~~ 149 (325)
-|.+|--.+.. ..|++| |+|+||.+|+..|..+ .++||.|+.++..
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 37788766643 578899 9999999999999864 6789999988754
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.99 E-value=0.0051 Score=48.29 Aligned_cols=52 Identities=23% Similarity=0.441 Sum_probs=40.7
Q ss_pred CCCCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 95 GLKEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 95 ~~~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
...+...|-.|+-.... ++.. ..|.+|..|+...|.....||+|.++|...-
T Consensus 24 s~~G~~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCSCCCCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cccCcccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 34567789999966543 3332 3599999999999999999999999998754
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.63 E-value=0.06 Score=39.39 Aligned_cols=46 Identities=26% Similarity=0.459 Sum_probs=33.4
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCcccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRGTL 147 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~l 147 (325)
....|.||.+. + .+...-.|...||..|+...|.... .||.|....
T Consensus 11 ~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34579999753 3 3444555999999999998887543 499997643
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.23 E-value=0.055 Score=41.93 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=25.4
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHH
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTW 133 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W 133 (325)
++..|.||++.+.......-+. |+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3467999998753332333376 9999999999983
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.57 E-value=0.25 Score=35.23 Aligned_cols=46 Identities=26% Similarity=0.627 Sum_probs=32.2
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcC----CCCCccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN----STCPLCRGT 146 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCPlCR~~ 146 (325)
..+..|.||... + .+.....|...||..|+..-+... -.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 445679999863 3 344444588999999999865432 249999753
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.98 E-value=0.16 Score=36.32 Aligned_cols=50 Identities=18% Similarity=0.398 Sum_probs=34.5
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHh-----cCCCCCccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-----SNSTCPLCRGT 146 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~ 146 (325)
.+...|+||...+.++...+..-.|..-||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345679999998865444444445999999999864321 24569999753
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.71 E-value=0.35 Score=32.89 Aligned_cols=44 Identities=34% Similarity=0.757 Sum_probs=29.3
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCcccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRG 145 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~ 145 (325)
.|.||...-.. +.+.....|...||..|+.+=+...+ .||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888865322 33444445999999999976444322 3999965
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.80 E-value=0.52 Score=50.71 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=44.7
Q ss_pred CCCCCcCceecccccCCCceeecCCCC-ceecHHHHHHHHhcCCCCCcccccccCCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLPSCS-HAFHITCIDTWLLSNSTCPLCRGTLSSSD 151 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~tCPlCR~~l~~~~ 151 (325)
..+.+.|+|-++.+.+ ++++| .| +.|-..+|.+||..+.+||.=|.++....
T Consensus 888 iP~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp SCGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CcHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 4567889999999877 77888 77 68999999999999999999999887644
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=84.13 E-value=0.29 Score=42.28 Aligned_cols=45 Identities=29% Similarity=0.547 Sum_probs=32.3
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCcccccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRGTL 147 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~l 147 (325)
+..|.||... ++ +.....|...||..|+.+-+.... .||.|+..-
T Consensus 4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4569999854 33 445555999999999987766432 499998643
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=83.83 E-value=0.4 Score=41.84 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=33.9
Q ss_pred CcCceecccccCCCc---eeecCCCCceecHHHHHH------HHh-----cCCCCCccccc
Q 039646 100 FDCAVCLCEFSEHDN---LRLLPSCSHAFHITCIDT------WLL-----SNSTCPLCRGT 146 (325)
Q Consensus 100 ~~C~ICle~~~~~~~---~~~lp~C~H~FH~~CI~~------Wl~-----~~~tCPlCR~~ 146 (325)
..|+||...|..++. .+..-.|..-||..|+.- -+. ..-.||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 359999999987763 555556999999999842 111 15679999864
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.68 E-value=0.29 Score=43.14 Aligned_cols=46 Identities=35% Similarity=0.593 Sum_probs=33.2
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCcccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRGTL 147 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~l 147 (325)
.+..|.+|... ..+.....|...||..|+.+-+...+ .||.|+..-
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 44569999854 23555556999999999988766432 499998643
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=83.37 E-value=0.28 Score=35.04 Aligned_cols=47 Identities=26% Similarity=0.508 Sum_probs=31.6
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCcccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRGTL 147 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~l 147 (325)
..+..|.||.+. + .+...-.|...||..|+.+-+.... .||.|+...
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345679999853 3 3434445889999999987554322 499997643
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.79 E-value=0.97 Score=34.69 Aligned_cols=35 Identities=20% Similarity=0.479 Sum_probs=22.9
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHH
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTW 133 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W 133 (325)
..+..|.||-. |..++... ...|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceec-cccccccccHhhcccc
Confidence 45678999962 33332221 1138899999999985
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.14 E-value=0.23 Score=34.73 Aligned_cols=45 Identities=29% Similarity=0.656 Sum_probs=30.7
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCcccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRG 145 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~ 145 (325)
..+..|.||... + .+.....|...||..|+.+-+...+ .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 445679999874 3 3444445999999999987554322 3888854
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.71 E-value=0.44 Score=37.98 Aligned_cols=45 Identities=31% Similarity=0.662 Sum_probs=30.5
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcC----CCCCcccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN----STCPLCRG 145 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCPlCR~ 145 (325)
.|.||...-.+.+.+...-.|...||..|+.+-|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5788876433334455555699999999998765542 24999974
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.91 E-value=1.3 Score=34.22 Aligned_cols=46 Identities=28% Similarity=0.562 Sum_probs=32.5
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRGT 146 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~ 146 (325)
..+..|.||... ++ +.....|.-.||..|+.+=+...+ .||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345679999864 33 444445889999999987665433 49999754
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=80.87 E-value=0.22 Score=35.33 Aligned_cols=48 Identities=27% Similarity=0.628 Sum_probs=32.9
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCcccccccC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~l~~ 149 (325)
.+..|.||... + .+.....|...||..|+.+-+...+ .||.|......
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 34579999864 3 3444445999999999987554322 49999775543
No 89
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=80.19 E-value=0.55 Score=34.53 Aligned_cols=51 Identities=16% Similarity=0.374 Sum_probs=34.5
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc----CCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS----NSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~l~~ 149 (325)
+...|.||..... ++.++..-.|.-.||..|+..-+.. .-.||.|+..+..
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3456999987653 3334444458999999999765432 3359999876543
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=79.22 E-value=0.61 Score=33.67 Aligned_cols=46 Identities=30% Similarity=0.591 Sum_probs=31.8
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRGT 146 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~ 146 (325)
..+..|.||.+. + .+.....|...||..|+.+-+...+ .||.|...
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 345679999864 3 3444445889999999986554322 49999753
No 91
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.79 E-value=0.57 Score=35.88 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=35.4
Q ss_pred CCcCceecccccC-CCceeecCCCCceecHHHHHHHHhc--------CCCCCcccccccC
Q 039646 99 PFDCAVCLCEFSE-HDNLRLLPSCSHAFHITCIDTWLLS--------NSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~~-~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCPlCR~~l~~ 149 (325)
...|.||...-.. ...+...-.|...||..|+.+-|.. .=.||.|+.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4579999975332 2455566669999999999876541 2349999876543
No 92
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.81 E-value=2.4 Score=31.51 Aligned_cols=49 Identities=20% Similarity=0.446 Sum_probs=32.1
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHh-----cCCCCCcccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-----SNSTCPLCRGTL 147 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~l 147 (325)
+...| ||...+......+..-.|..-||..|+.--.. ..-.||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34457 89888754444444445999999999853211 245699998653
No 93
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=75.66 E-value=8.5 Score=26.92 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=18.1
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHH
Q 039646 15 SPVLLLILVIVAVVFFIFGLVHLLIR 40 (325)
Q Consensus 15 sp~iliIi~IL~vv~~ii~ll~ll~r 40 (325)
.|+++|++.+++.++++.+++.++++
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777666666653
No 94
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.11 E-value=0.41 Score=37.08 Aligned_cols=50 Identities=26% Similarity=0.524 Sum_probs=33.7
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCcccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRGTL 147 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~l 147 (325)
.+...|.||...-.. +.+...-.|...||..|+.+=|...+ .||.|+...
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 345579999876432 33445556999999999986554322 399997653
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=74.79 E-value=1.3 Score=32.62 Aligned_cols=50 Identities=18% Similarity=0.407 Sum_probs=33.2
Q ss_pred CCCCcCceecccc-cCCCceeecCCCCceecHHHHHHHHhc--CCCCCccccc
Q 039646 97 KEPFDCAVCLCEF-SEHDNLRLLPSCSHAFHITCIDTWLLS--NSTCPLCRGT 146 (325)
Q Consensus 97 ~~~~~C~ICle~~-~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~ 146 (325)
.+...|.||...- ...+.+...-.|.-.||..|+..-..- .=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4456799998753 334456565669999999998753211 2248888653
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.53 E-value=0.96 Score=35.69 Aligned_cols=47 Identities=26% Similarity=0.601 Sum_probs=30.4
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHhc----CCCCCccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS----NSTCPLCR 144 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~----~~tCPlCR 144 (325)
.++..|.||.+.-...+.+ .-..|...||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3456799998763222223 33459999999999887642 22377664
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=74.47 E-value=0.92 Score=34.75 Aligned_cols=53 Identities=17% Similarity=0.376 Sum_probs=34.7
Q ss_pred CCCCcCceecccc-cCCCceeecCCCCceecHHHHHHHHhc--CCCCCcccccccC
Q 039646 97 KEPFDCAVCLCEF-SEHDNLRLLPSCSHAFHITCIDTWLLS--NSTCPLCRGTLSS 149 (325)
Q Consensus 97 ~~~~~C~ICle~~-~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~l~~ 149 (325)
.++..|.||...- ...+.+.....|.-.||..|+..-+.- .-.||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3456799999753 233355555568889999999754321 2249999765443
No 98
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=73.13 E-value=3.1 Score=28.42 Aligned_cols=44 Identities=16% Similarity=0.331 Sum_probs=29.6
Q ss_pred cCceecccccCCCceeecC-CCCceecHHHHHHHH----hcCCCCCccc
Q 039646 101 DCAVCLCEFSEHDNLRLLP-SCSHAFHITCIDTWL----LSNSTCPLCR 144 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp-~C~H~FH~~CI~~Wl----~~~~tCPlCR 144 (325)
.|.+|...+.++...+..- .|..-||..|+.--. ...-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788988886555455544 488899999975321 2456699885
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=72.51 E-value=1.1 Score=34.83 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=29.2
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhc---CCCCCcccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS---NSTCPLCRG 145 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~ 145 (325)
..| ||-.....+. ++..-.|.-.||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 7877655444 4444459999999998653322 235999973
No 100
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=72.30 E-value=0.82 Score=39.80 Aligned_cols=43 Identities=30% Similarity=0.565 Sum_probs=29.8
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcC----CCCCccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN----STCPLCRGT 146 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCPlCR~~ 146 (325)
..|.+|... ++ +.....|...||..|+.+=+... -.||.|+..
T Consensus 3 ~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 469999854 33 33344588999999997655432 249999865
No 101
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=72.25 E-value=3 Score=30.08 Aligned_cols=34 Identities=26% Similarity=0.654 Sum_probs=26.0
Q ss_pred CCCcCceecccccCCCceeecC-CCCceecHHHHH
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLP-SCSHAFHITCID 131 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp-~C~H~FH~~CI~ 131 (325)
....|.+|...+..++..+..- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3457999999987766666665 699999999983
No 102
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=71.65 E-value=4.4 Score=28.41 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=17.8
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHH
Q 039646 15 SPVLLLILVIVAVVFFIFGLVHLLIR 40 (325)
Q Consensus 15 sp~iliIi~IL~vv~~ii~ll~ll~r 40 (325)
.|+++|++.+++.++++.+++.++++
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777666666653
No 103
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=71.07 E-value=6 Score=25.81 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=17.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039646 16 PVLLLILVIVAVVFFIFGLVHLLIRYLKK 44 (325)
Q Consensus 16 p~iliIi~IL~vv~~ii~ll~ll~r~l~r 44 (325)
-.+++|+.+++.++..++++.+.++.+.+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~rl~K 39 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIRRLIK 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666666666666665543
No 104
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=69.52 E-value=0.76 Score=34.47 Aligned_cols=44 Identities=36% Similarity=0.690 Sum_probs=27.6
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcC-----CCCCcccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN-----STCPLCRG 145 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~tCPlCR~ 145 (325)
.|.||...- ..+.+...-.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355665442 223444444688999999998766532 35999975
No 105
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=69.03 E-value=1.2 Score=37.73 Aligned_cols=48 Identities=21% Similarity=0.507 Sum_probs=32.6
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHH-----hcCCCCCccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWL-----LSNSTCPLCRGT 146 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl-----~~~~tCPlCR~~ 146 (325)
+...| +|......+...+..-.|...||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45569 9998765444455555699999999985321 124469999864
No 106
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.63 E-value=1.2 Score=33.25 Aligned_cols=44 Identities=32% Similarity=0.628 Sum_probs=29.1
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhc-----CCCCCcccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-----NSTCPLCRG 145 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~ 145 (325)
.|.||...- .+..+...-.|...||..|+.+=|.. .=.||.|..
T Consensus 28 ~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678887542 23344455569999999999865543 124998864
No 107
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=66.89 E-value=3 Score=29.57 Aligned_cols=51 Identities=18% Similarity=0.431 Sum_probs=34.4
Q ss_pred CCCCcCceeccccc-CCCceeecCCCCceecHHHHHHHHh-------cCCCCCcccccc
Q 039646 97 KEPFDCAVCLCEFS-EHDNLRLLPSCSHAFHITCIDTWLL-------SNSTCPLCRGTL 147 (325)
Q Consensus 97 ~~~~~C~ICle~~~-~~~~~~~lp~C~H~FH~~CI~~Wl~-------~~~tCPlCR~~l 147 (325)
.++..|.||..... ....+.....|.-.||..|+..-+. ..-.||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 34567999997643 3345555566999999999886442 123499997643
No 108
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=66.07 E-value=9.6 Score=25.25 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=19.2
Q ss_pred chhHhhHHHHHHHHHHHHHHHHHHHHH
Q 039646 14 ISPVLLLILVIVAVVFFIFGLVHLLIR 40 (325)
Q Consensus 14 isp~iliIi~IL~vv~~ii~ll~ll~r 40 (325)
-.|.+++++.+++.++++.+++.++.+
T Consensus 7 ~vp~wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888777777766666654
No 109
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.49 E-value=3.3 Score=32.00 Aligned_cols=45 Identities=29% Similarity=0.617 Sum_probs=28.2
Q ss_pred CCCCcCceecccccCCCceeecCC--CC-ceecHHHHHHHHhc----CCCCCccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPS--CS-HAFHITCIDTWLLS----NSTCPLCRGT 146 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~~ 146 (325)
.+...| ||..... ++ ++..-. |. ..||..|+. |.. +-.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 445568 9988642 32 333334 54 579999997 332 3359999764
No 110
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=63.99 E-value=2.6 Score=30.04 Aligned_cols=43 Identities=23% Similarity=0.460 Sum_probs=28.9
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLC 143 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlC 143 (325)
..|--|...|... .....++|++.||.+|=.---..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999888532 224466799999999943322234569988
No 111
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.67 E-value=3.1 Score=30.85 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=30.6
Q ss_pred CCCcCceecccccCCCceeecC--CCCceecHHHHHHHH---------hcCCCCCcccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLP--SCSHAFHITCIDTWL---------LSNSTCPLCRGTL 147 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp--~C~H~FH~~CI~~Wl---------~~~~tCPlCR~~l 147 (325)
....| ||-.....+..| ..- .|..-||..|+.--- ..+-.||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45668 798874444333 333 499999999985321 1245699998643
No 112
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=62.64 E-value=1.9 Score=38.81 Aligned_cols=44 Identities=36% Similarity=0.674 Sum_probs=25.7
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcC-----CCCCcccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN-----STCPLCRG 145 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~tCPlCR~ 145 (325)
.|.+|...=. +..+...-.|...||..|+.+=|... =.||.|+.
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 4777765322 23344444599999999999655431 24999975
No 113
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=62.56 E-value=8.5 Score=32.07 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=30.7
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHh-----------cCCCCCcccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-----------SNSTCPLCRG 145 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----------~~~tCPlCR~ 145 (325)
.+..|.||.+. ++ +...-.|...||..||.+-+. ..-.||.|+.
T Consensus 62 ~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45679999864 33 444445999999999997652 1224999963
No 114
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=62.01 E-value=1.7 Score=31.74 Aligned_cols=44 Identities=36% Similarity=0.714 Sum_probs=27.7
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhc-----CCCCCcccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-----NSTCPLCRG 145 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~ 145 (325)
.|.||...- .+..+...-.|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456676432 22344444458899999999865543 224999875
No 115
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=61.32 E-value=3.8 Score=32.26 Aligned_cols=47 Identities=30% Similarity=0.623 Sum_probs=33.2
Q ss_pred CcCceecccccCCCceeecC-CCCceecHHHHHHH------Hh----cCCCCCccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLP-SCSHAFHITCIDTW------LL----SNSTCPLCRGT 146 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp-~C~H~FH~~CI~~W------l~----~~~tCPlCR~~ 146 (325)
..|.||...+.+....+..- .|..-||..|+.-- +. ..-.||.|+..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 46999999986665555553 58899999998421 10 23459999874
No 116
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=60.28 E-value=14 Score=28.95 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=22.8
Q ss_pred CCcCceecccc-----cCCCceeecCCCCceecHHHHH
Q 039646 99 PFDCAVCLCEF-----SEHDNLRLLPSCSHAFHITCID 131 (325)
Q Consensus 99 ~~~C~ICle~~-----~~~~~~~~lp~C~H~FH~~CI~ 131 (325)
...|.+|+..- ..++++..-..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 45699998752 1223455555699999999995
No 117
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=59.97 E-value=13 Score=28.29 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=28.9
Q ss_pred CCCCcCceecccccCCCceeecC-CCCceecHHHHHHHHhc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLP-SCSHAFHITCIDTWLLS 136 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp-~C~H~FH~~CI~~Wl~~ 136 (325)
.....|.+|.+.+++..- +..| .=.|.||..|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCce-eeCCCccCCeeeccccHHHHHh
Confidence 445789999999877443 3433 23699999999998875
No 118
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=59.93 E-value=6.1 Score=28.87 Aligned_cols=46 Identities=28% Similarity=0.576 Sum_probs=28.7
Q ss_pred CCCCcCceecccccCCCceeecCC--CC-ceecHHHHHHHHhc----CCCCCcccccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPS--CS-HAFHITCIDTWLLS----NSTCPLCRGTL 147 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~~l 147 (325)
.+...| ||..... + .++..-. |. ..||..|+. |.. .-.||.|+...
T Consensus 14 ~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345568 8987542 3 3333334 55 689999997 433 23499997643
No 119
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=59.49 E-value=19 Score=26.51 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 20 LILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 20 iIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
+.-+|+++++|++++++++-..++.+
T Consensus 18 iGGLifA~vLfi~GI~iilS~KckCk 43 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVLSRRCRCK 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcCccccC
Confidence 44466777777777777776555444
No 120
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=59.30 E-value=15 Score=24.51 Aligned_cols=36 Identities=6% Similarity=0.008 Sum_probs=21.4
Q ss_pred CCchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 039646 12 SRISPVLLLILVIVAVVFFIFGLVHLLIRYLKKRPS 47 (325)
Q Consensus 12 ~~isp~iliIi~IL~vv~~ii~ll~ll~r~l~rr~~ 47 (325)
++...+..-++.-+++++++.+++.+++|..++++.
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 334444444444455555666777788888877653
No 121
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.82 E-value=3.8 Score=30.00 Aligned_cols=46 Identities=22% Similarity=0.462 Sum_probs=30.3
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHH------H---hcCCCCCccccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTW------L---LSNSTCPLCRGT 146 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W------l---~~~~tCPlCR~~ 146 (325)
...| ||...+.... .+..-.|..-||..|+.-- + ...-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~-MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRF-MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSC-EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCC-EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3557 8988765333 3344459999999998421 1 245679999864
No 122
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=55.92 E-value=9.6 Score=30.17 Aligned_cols=49 Identities=24% Similarity=0.461 Sum_probs=31.6
Q ss_pred CCCCCcCceecccccCCCceeecC--CCCceecHHHHHHHHhcCC----CCCcccccccCC
Q 039646 96 LKEPFDCAVCLCEFSEHDNLRLLP--SCSHAFHITCIDTWLLSNS----TCPLCRGTLSSS 150 (325)
Q Consensus 96 ~~~~~~C~ICle~~~~~~~~~~lp--~C~H~FH~~CI~~Wl~~~~----tCPlCR~~l~~~ 150 (325)
...+..|.+|.+. + .+...- .|...||..|+. |...+ .||.|+-.+...
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 3456679999842 3 344433 388999999997 54322 399887655544
No 123
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.92 E-value=6 Score=32.05 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHH
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDT 132 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~ 132 (325)
...|.+|...|..-..-.....||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999999976443334446999999999654
No 124
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=55.84 E-value=6.1 Score=25.22 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=12.8
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 15 SPVLLLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 15 sp~iliIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
++.-.++..+.. +++++++...+..|++||
T Consensus 5 s~~~sIaagVvg-lll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 5 SPVTFIIATVVG-VLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTTTTHHHHHC
T ss_pred CCCcEeHHHHHH-HHHHHHHHHHhheEEeec
Confidence 334444444444 333333333344455554
No 125
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=55.74 E-value=1 Score=35.95 Aligned_cols=47 Identities=23% Similarity=0.649 Sum_probs=30.5
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcCC----CCCccccccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNS----TCPLCRGTLS 148 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCPlCR~~l~ 148 (325)
.|.||...-.. ..+...-.|...||..|+.+=|...+ .||.|+..+.
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 47778764322 34444445999999999986554322 3998876543
No 126
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=55.72 E-value=8 Score=28.17 Aligned_cols=26 Identities=27% Similarity=0.156 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 20 LILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 20 iIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
+.-+|+++|+|++++++++-..++.+
T Consensus 19 igGLifA~vLfi~GI~iilS~kcrCk 44 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALALSGKCKCR 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred ecchhhHHHHHHHHHHHHHcCccccc
Confidence 44567777778877777776544443
No 127
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=55.65 E-value=1.9 Score=33.96 Aligned_cols=45 Identities=20% Similarity=0.481 Sum_probs=28.8
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcC----CCCCccccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSN----STCPLCRGT 146 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCPlCR~~ 146 (325)
.|.||...-.. +.+.....|...||..|+.+-+... -.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46667654322 3444555699999999998755432 248888654
No 128
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=55.45 E-value=15 Score=28.42 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=34.9
Q ss_pred CCCcCceecccccC---CCceeecCCCCceecHHHHHHHHh-cCCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSE---HDNLRLLPSCSHAFHITCIDTWLL-SNSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~---~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~l~~ 149 (325)
....|.||-+++-. ++..+-...|+--.|..|.+-=.. .++.||.|+..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 34579999988532 222222223777889999875444 47789999988864
No 129
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=55.39 E-value=8.4 Score=28.82 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=26.4
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHH
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTW 133 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W 133 (325)
+...|.+|...|..-..-.....||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 445799999999765433344469999999997654
No 130
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=55.37 E-value=12 Score=25.09 Aligned_cols=29 Identities=7% Similarity=-0.019 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039646 18 LLLILVIVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
..-++.-+++++++.+++.+++|..++++
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred EeehhHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 33334334444455566677777776654
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=55.25 E-value=7.6 Score=29.51 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=34.6
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHh-------cCCCCCcccccccC
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-------SNSTCPLCRGTLSS 149 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-------~~~tCPlCR~~l~~ 149 (325)
.+...|.+|...|..-..-.....||++||..|....+. ....|-.|-..+..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 345579999999976543334446999999999765331 12347777655543
No 132
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=54.88 E-value=1.8 Score=31.58 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=31.4
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHH----hcCCCCCccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWL----LSNSTCPLCRGT 146 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl----~~~~tCPlCR~~ 146 (325)
....| ||......+...+..-.|..-||..|+.--. ...-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 6988765554444444599999999986432 124459999764
No 133
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=54.39 E-value=6.9 Score=29.78 Aligned_cols=36 Identities=17% Similarity=0.371 Sum_probs=26.5
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHH
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWL 134 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl 134 (325)
...|.+|...|..-..-.....||++||..|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 456999999997544333445699999999976653
No 134
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=54.39 E-value=8.1 Score=28.77 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=26.1
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHH
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTW 133 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W 133 (325)
+...|.+|...|..-..-.....||++||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 345799999999764433344469999999997543
No 135
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=53.49 E-value=8.8 Score=27.93 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=24.1
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHH
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDT 132 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~ 132 (325)
..|.+|...|..-..-.....||++||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999876433334446999999999643
No 136
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.37 E-value=9.2 Score=28.56 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=23.5
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHH
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCI 130 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI 130 (325)
+...|.+|...|..-..--....||.+||..|.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 345799999999654333334459999999883
No 137
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=52.94 E-value=15 Score=27.52 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039646 22 LVIVAVVFFIFGLVHLLIRYL 42 (325)
Q Consensus 22 i~IL~vv~~ii~ll~ll~r~l 42 (325)
+.+++.++++-++++++++++
T Consensus 15 ~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 138
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.79 E-value=6.2 Score=34.71 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=25.9
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHH
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDT 132 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~ 132 (325)
+...|.+|...|..-..-.....||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 34689999999975443344556999999999654
No 139
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=51.95 E-value=19 Score=29.43 Aligned_cols=44 Identities=27% Similarity=0.399 Sum_probs=30.0
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHH------hc-----CCCCCcccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWL------LS-----NSTCPLCRG 145 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl------~~-----~~tCPlCR~ 145 (325)
.+..|.||.+. .++.....|-..||..||.+-+ .. .=.|++|+.
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 44569999854 3344444589999999999752 11 124999964
No 140
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=51.46 E-value=2 Score=34.98 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=32.4
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
..|..|...|..-..-.....||.+||..|..........|-.|...+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 479999999875433334446999999999776655566788886543
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.91 E-value=7.1 Score=34.66 Aligned_cols=36 Identities=17% Similarity=0.457 Sum_probs=26.6
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHH
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTW 133 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~W 133 (325)
+...|.+|...|..-..-.....||++||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 345899999999765443445569999999997654
No 142
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=50.10 E-value=8.4 Score=31.71 Aligned_cols=50 Identities=12% Similarity=0.226 Sum_probs=30.4
Q ss_pred CCCCcCceeccccc-CCCceeecCCCCceecHHHHHHHHhc-CC---CCCccccc
Q 039646 97 KEPFDCAVCLCEFS-EHDNLRLLPSCSHAFHITCIDTWLLS-NS---TCPLCRGT 146 (325)
Q Consensus 97 ~~~~~C~ICle~~~-~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~---tCPlCR~~ 146 (325)
.+...|++|...|. ....-+....|.|.+|..|-..-... +. .|=+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 35678999999983 32333444459999998885432111 11 17777653
No 143
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=49.95 E-value=3.7 Score=29.80 Aligned_cols=47 Identities=19% Similarity=0.470 Sum_probs=30.2
Q ss_pred CCCCcCceecccccCCCceeecCCCCceecHHHHHHHHh---cCCCCCcccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL---SNSTCPLCRG 145 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~ 145 (325)
.+...| ||...+. +...+..-.|..-||..|+.--.. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345668 9988765 333444445999999999864221 2345888864
No 144
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.49 E-value=13 Score=25.97 Aligned_cols=40 Identities=18% Similarity=0.381 Sum_probs=29.2
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
..|+.|-+.+...+.+... -+..||..| ..|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 4699999988765544333 578899888 568889887754
No 145
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=49.21 E-value=12 Score=36.07 Aligned_cols=48 Identities=17% Similarity=0.431 Sum_probs=30.3
Q ss_pred CcCceecccccCCCceeecCCCCce--ecHHHHHHHHhcCC--CCCcccccccCC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHA--FHITCIDTWLLSNS--TCPLCRGTLSSS 150 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~--FH~~CI~~Wl~~~~--tCPlCR~~l~~~ 150 (325)
..|++-...+.. .++-.. |.|. |-..=+.....+.. .||+|.+.+...
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 569987777654 356665 9998 55443333333333 499999877543
No 146
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.41 E-value=17 Score=25.80 Aligned_cols=43 Identities=16% Similarity=0.432 Sum_probs=31.2
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
....|+-|-+.+...+.+... -+..||..| ..|-.|+.+|...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 346799999998765554333 578899988 5688898877653
No 147
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=47.99 E-value=4.7 Score=28.37 Aligned_cols=43 Identities=30% Similarity=0.628 Sum_probs=27.2
Q ss_pred CCCcCceecccccCCCceeecCC--CC-ceecHHHHHHHHhc----CCCCCcccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPS--CS-HAFHITCIDTWLLS----NSTCPLCRG 145 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~ 145 (325)
+..-| ||.... .+ .++..-. |. ..||..|+. |.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44557 898764 23 3444444 55 699999997 333 234999965
No 148
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=47.84 E-value=12 Score=35.94 Aligned_cols=48 Identities=17% Similarity=0.375 Sum_probs=31.0
Q ss_pred CcCceecccccCCCceeecCCCCce--ecHHHHHHHHhcCC--CCCcccccccCC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHA--FHITCIDTWLLSNS--TCPLCRGTLSSS 150 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~--FH~~CI~~Wl~~~~--tCPlCR~~l~~~ 150 (325)
..|++-+..+.. .++-.. |.|. |-..=+.....+.. .||+|.+.+...
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 469887777654 356665 9998 65444444333333 499999887654
No 149
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.47 E-value=16 Score=25.47 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=28.9
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
..|+.|-+.+...+.+... -+..||..| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEY--GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEECS--TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEEE--CccccCccc--------CeECCCCCcCCC
Confidence 4699999988765444332 578899888 568889887754
No 150
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=47.23 E-value=4 Score=39.09 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=0.0
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhc-------CCCCCcccccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLS-------NSTCPLCRGTL 147 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-------~~tCPlCR~~l 147 (325)
...|.+|...|..-..-.....||++||..|....+.. ...|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45799999998654332334459999999999765421 23477775443
No 151
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.13 E-value=20 Score=25.01 Aligned_cols=40 Identities=23% Similarity=0.504 Sum_probs=27.4
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
...|+.|-+.+...+..... -+..||..| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 35699998877654333322 468889887 55888888774
No 152
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=45.69 E-value=5 Score=28.26 Aligned_cols=43 Identities=30% Similarity=0.627 Sum_probs=26.6
Q ss_pred CCCcCceecccccCCCceeecCC--CC-ceecHHHHHHHHhc----CCCCCcccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPS--CS-HAFHITCIDTWLLS----NSTCPLCRG 145 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~ 145 (325)
+..-| ||..... + .++..-. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44557 8987532 2 3444444 44 689999997 443 234999864
No 153
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.25 E-value=19 Score=25.18 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=29.3
Q ss_pred CCcCceecccccC--CCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 99 PFDCAVCLCEFSE--HDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~~--~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
...|+-|-+.+.. ++.+... -+..||..| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCccc--------CEeccCCCcCCC
Confidence 3569999998875 3333332 578999988 568999888753
No 154
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=44.38 E-value=11 Score=28.78 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=15.1
Q ss_pred CCCCchhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 039646 10 ATSRISPVLLLILVIVAVVFFIFGLVHLLIRY 41 (325)
Q Consensus 10 s~~~isp~iliIi~IL~vv~~ii~ll~ll~r~ 41 (325)
.+-++.|.+++++.+.++++++ ++|++-++
T Consensus 55 ~GlKV~P~~VLv~sl~FIa~Vi--lLHI~gK~ 84 (87)
T 2ww9_C 55 NGFRVDSLVVLFLSVGFIFSVI--ALHLLTKF 84 (87)
T ss_dssp ---CCCHHHHHHHHHHHHHHHH--HC------
T ss_pred CceEEcCeeehhhHHHHHHHHH--HHHHhhhh
Confidence 4678888888877776665544 56666555
No 155
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.31 E-value=15 Score=26.07 Aligned_cols=40 Identities=20% Similarity=0.423 Sum_probs=30.6
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
...|+.|-+.+..++.+.. -+..||..| ..|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 4579999999886665432 578999988 569999888764
No 156
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=43.96 E-value=28 Score=23.25 Aligned_cols=31 Identities=10% Similarity=0.283 Sum_probs=15.7
Q ss_pred chhHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 14 ISPVLLLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 14 isp~iliIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
...+...++. +++++++.+.+.+++|..+..
T Consensus 11 ~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 11 LTSIISAVVG-ILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHCSC
T ss_pred ccchHHHHHH-HHHHHHHHHHHHhheehhhhh
Confidence 3333444444 344445555556666666554
No 157
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.50 E-value=16 Score=28.87 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=22.7
Q ss_pred cCceeccccc------CCCceeecCCCCceecHHHHHHH
Q 039646 101 DCAVCLCEFS------EHDNLRLLPSCSHAFHITCIDTW 133 (325)
Q Consensus 101 ~C~ICle~~~------~~~~~~~lp~C~H~FH~~CI~~W 133 (325)
.|.||+..-. .++.+..-..|+..||..|+...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 5999987541 12344444459999999999754
No 158
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.19 E-value=20 Score=25.71 Aligned_cols=40 Identities=20% Similarity=0.453 Sum_probs=29.9
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
..|+.|-+.+...+.++.. -+..||..| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCC
Confidence 5799999998766554332 578899888 568899887754
No 159
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=48.17 E-value=5.4 Score=26.05 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039646 23 VIVAVVFFIFGLVHLLI 39 (325)
Q Consensus 23 ~IL~vv~~ii~ll~ll~ 39 (325)
.+++.+.++++++++++
T Consensus 13 avlal~vi~iisLIiLi 29 (39)
T 2l6w_A 13 AILALVVLTIISLIILI 29 (39)
Confidence 33333333333333333
No 160
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=42.08 E-value=55 Score=20.96 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 039646 18 LLLILVIVAVVFFIFGLVHLLI 39 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~ll~ 39 (325)
.-+++.+++.+.++..++++++
T Consensus 14 AGiVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHHHHe
Confidence 3444444444444444444444
No 161
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=41.51 E-value=3 Score=30.05 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=26.8
Q ss_pred CCcCceecccccCCCceeec-CCCCceecHHHHHHH---Hh-----cCCCCCcccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLL-PSCSHAFHITCIDTW---LL-----SNSTCPLCRG 145 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~l-p~C~H~FH~~CI~~W---l~-----~~~tCPlCR~ 145 (325)
...| ||-.....+..+.-- +.|..-||..|+--- .. .+-.||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3457 787655444433221 138889999997321 01 1345999974
No 162
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.11 E-value=20 Score=26.03 Aligned_cols=40 Identities=28% Similarity=0.607 Sum_probs=30.4
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
....|+-|-+.+..++.+.. -+..||..| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 45679999998876655543 468899988 56999988775
No 163
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.08 E-value=23 Score=25.16 Aligned_cols=39 Identities=21% Similarity=0.442 Sum_probs=28.7
Q ss_pred CcCceecccccC--CCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 100 FDCAVCLCEFSE--HDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 100 ~~C~ICle~~~~--~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
..|+.|-+.+.. ....+.. -+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCC
Confidence 469999998875 3334332 578999998 56899988875
No 164
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=40.87 E-value=46 Score=21.90 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039646 18 LLLILVIVAVVFFIFGLVHLLIRYLK 43 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~ll~r~l~ 43 (325)
..+++.+++.++++-+++.++++++.
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliwk~~~ 35 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554
No 165
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=40.70 E-value=19 Score=28.04 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=16.9
Q ss_pred CCCCchhHhhHHHHHHHHHHHH
Q 039646 10 ATSRISPVLLLILVIVAVVFFI 31 (325)
Q Consensus 10 s~~~isp~iliIi~IL~vv~~i 31 (325)
.+-++.|..++++.++++++++
T Consensus 64 ~GlKV~P~~VLv~sl~Fi~~Vi 85 (96)
T 2wwb_C 64 PGLKVGPVPVLVMSLLFIASVF 85 (96)
T ss_dssp CCCCCSSCSHHHHHHHHHHHHH
T ss_pred CceEECCEEehhhHHHHHHHHH
Confidence 4678999988888877776654
No 166
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=38.62 E-value=3.3 Score=31.20 Aligned_cols=28 Identities=21% Similarity=0.628 Sum_probs=18.8
Q ss_pred eecCCCCceecHHHHHHHHhcCC--CCCcc
Q 039646 116 RLLPSCSHAFHITCIDTWLLSNS--TCPLC 143 (325)
Q Consensus 116 ~~lp~C~H~FH~~CI~~Wl~~~~--tCPlC 143 (325)
+..|.|+|.||..|-..|=..|. +|..-
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred eEeCCCCCccccccCCchhhcCCCCChHHH
Confidence 45666999999999888743333 45443
No 167
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=38.13 E-value=16 Score=25.94 Aligned_cols=38 Identities=26% Similarity=0.522 Sum_probs=20.0
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
.|+.|-+.+..++.+.. -+..||..| ..|-.|+.+|..
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCCC
Confidence 36666666554333322 356666665 346666665543
No 168
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=37.39 E-value=2.8 Score=26.62 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=9.8
Q ss_pred CCcCceecccccCC
Q 039646 99 PFDCAVCLCEFSEH 112 (325)
Q Consensus 99 ~~~C~ICle~~~~~ 112 (325)
.+.|+||+..+...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46788888777553
No 169
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=37.18 E-value=23 Score=24.46 Aligned_cols=42 Identities=17% Similarity=0.442 Sum_probs=31.0
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
...|+.|-..+...+.+... -+..||..| ..|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCC--------CcccCCCCCCCCC
Confidence 45799999998876655433 578899988 3688898877653
No 170
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=34.91 E-value=10 Score=26.90 Aligned_cols=44 Identities=32% Similarity=0.672 Sum_probs=26.8
Q ss_pred CCCCcCceecccccCCCceeecCC--CC-ceecHHHHHHHHhc----CCCCCcccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPS--CS-HAFHITCIDTWLLS----NSTCPLCRG 145 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~ 145 (325)
.+..-| ||.... .+ ..+..-. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 344567 898753 23 3444444 44 799999987 332 335999975
No 171
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.02 E-value=29 Score=25.22 Aligned_cols=42 Identities=29% Similarity=0.460 Sum_probs=30.9
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
....|+.|-+.+...+.+. . -+..||..| ..|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--V-NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--B-TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEE--E-CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 4467999999886655543 2 578899988 5688998877654
No 172
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=33.52 E-value=3.9 Score=30.50 Aligned_cols=14 Identities=29% Similarity=0.823 Sum_probs=12.8
Q ss_pred CCCceecHHHHHHH
Q 039646 120 SCSHAFHITCIDTW 133 (325)
Q Consensus 120 ~C~H~FH~~CI~~W 133 (325)
.|+|.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999888
No 173
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=33.03 E-value=87 Score=19.88 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039646 18 LLLILVIVAVVFFIFGLVHLLIRYLKK 44 (325)
Q Consensus 18 iliIi~IL~vv~~ii~ll~ll~r~l~r 44 (325)
.+.+++-|+++|+++.--++++|-.+.
T Consensus 9 alt~i~gl~vif~~lg~tflywrgrrh 35 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEccccc
Confidence 355666677777777777676665443
No 174
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=32.58 E-value=67 Score=20.88 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039646 19 LLILVIVAVVFFIFGLVHLLIRYLKK 44 (325)
Q Consensus 19 liIi~IL~vv~~ii~ll~ll~r~l~r 44 (325)
.++++|++++..+++.+.++....+|
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777776666555444
No 175
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=32.12 E-value=19 Score=28.41 Aligned_cols=37 Identities=19% Similarity=0.495 Sum_probs=23.3
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
.|+.|-..+...+.+... -++.||..| ..|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEEE--CCccccccc--------CccccCCCCC
Confidence 588887777654433222 467777777 4577777666
No 176
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.11 E-value=34 Score=24.49 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=29.0
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
....|+.|-+.+.. . . +.. -+..||..| ..|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~-~-~-~~a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-V-F-VKL-RDRHRHPEC--------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS-S-C-EEC-SSCEECTTT--------TSCSSSCCCHHH
T ss_pred CCCccccCCCCccC-c-E-EEE-CcceeCcCc--------CeeCCCCCCCCC
Confidence 34679999998875 2 2 222 678999988 468899887753
No 177
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.81 E-value=18 Score=28.36 Aligned_cols=40 Identities=23% Similarity=0.557 Sum_probs=24.4
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
..|++|..++.-.. ++.+|..|-.. +.....||-|.++|.
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHH
Confidence 57999998865422 23334444222 344566999988764
No 178
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.77 E-value=18 Score=28.41 Aligned_cols=13 Identities=23% Similarity=0.815 Sum_probs=11.2
Q ss_pred eecHHHHHHHHhc
Q 039646 124 AFHITCIDTWLLS 136 (325)
Q Consensus 124 ~FH~~CI~~Wl~~ 136 (325)
-||..|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999963
No 179
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.70 E-value=18 Score=28.35 Aligned_cols=12 Identities=33% Similarity=1.071 Sum_probs=10.8
Q ss_pred eecHHHHHHHHh
Q 039646 124 AFHITCIDTWLL 135 (325)
Q Consensus 124 ~FH~~CI~~Wl~ 135 (325)
-||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 180
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.70 E-value=38 Score=23.83 Aligned_cols=40 Identities=20% Similarity=0.422 Sum_probs=29.1
Q ss_pred CcCceecccccC---CCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 100 FDCAVCLCEFSE---HDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~~---~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
..|+-|-..+.. ....+.. =+..||..| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCccc--------CEehhcCCCCCC
Confidence 579999998875 3333332 478899988 569999888754
No 181
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.45 E-value=20 Score=25.73 Aligned_cols=41 Identities=24% Similarity=0.545 Sum_probs=29.4
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
...|+.|-+.+...+.+.. -+..||..| ..|-.|+.+|...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCCC
Confidence 3569999998876654432 578899888 4588898887543
No 182
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=30.24 E-value=54 Score=24.29 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=20.0
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
..|+.|-+.+..+..+... =+..||..| ..|-.|+.+|
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L 43 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHY--KNRFWHDTC--------FRCAKCLHPL 43 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEE--TTEEEETTT--------CCCSSSCCCT
T ss_pred CcCcccCCcccCCceEEEE--CccChhhcC--------CcccccCCCC
Confidence 3566666666532222222 355666655 3466666655
No 183
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=29.07 E-value=19 Score=26.15 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=29.2
Q ss_pred cCceecccccCCCceeecCCCCceecHHHHHHHHh-----cCCCCCccccc
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-----SNSTCPLCRGT 146 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~ 146 (325)
.| ||...+..+...+..-.|.--||..|+.---. ..-.||.|+..
T Consensus 12 yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 35 78876644444444445899999999953221 24569999864
No 184
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=28.92 E-value=21 Score=26.44 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039646 19 LLILVIVAVVFFIFGLVHLLIRYLKKRP 46 (325)
Q Consensus 19 liIi~IL~vv~~ii~ll~ll~r~l~rr~ 46 (325)
=+.-+|+++|+|++++++++-..++.+.
T Consensus 20 RigGLifA~vLfi~GI~iilS~kcrCk~ 47 (74)
T 2zxe_G 20 RVVGLIVAAVLCVIGIIILLAGKCRCKF 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred eeccchhHHHHHHHHHHHHHcCccccCC
Confidence 3455677777888887777765544443
No 185
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=28.50 E-value=14 Score=36.77 Aligned_cols=47 Identities=23% Similarity=0.448 Sum_probs=30.7
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHh-----cCCCCCccccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL-----SNSTCPLCRGT 146 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~ 146 (325)
...| ||...+..+...+.+-.|.--||..|+.---. ..-.||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3446 88877653444445555999999999843211 23469999864
No 186
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.10 E-value=46 Score=24.44 Aligned_cols=41 Identities=29% Similarity=0.610 Sum_probs=30.8
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
...|+-|-+.+...+.+ .. -+..||..| ..|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LA-NQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--EC-SSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EE-CCCEECCCC--------CeeCCCCCCCCCC
Confidence 45799999998765544 23 678999988 5588898887654
No 187
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.01 E-value=50 Score=22.77 Aligned_cols=40 Identities=20% Similarity=0.478 Sum_probs=27.9
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
...|+.|-+.+.. ..+. . -+..||.+| ..|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK--A-MNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE--E-TTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEE--E-CcccccccC--------CEeCCCCCcCCCC
Confidence 3569999988763 3222 2 578899888 4688898877653
No 188
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=27.81 E-value=6.7 Score=28.01 Aligned_cols=49 Identities=22% Similarity=0.467 Sum_probs=27.2
Q ss_pred CCCCCcCceeccc-ccCCCceeecCCCCceecHHHHHHHHhcC-CC---CCcccc
Q 039646 96 LKEPFDCAVCLCE-FSEHDNLRLLPSCSHAFHITCIDTWLLSN-ST---CPLCRG 145 (325)
Q Consensus 96 ~~~~~~C~ICle~-~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~t---CPlCR~ 145 (325)
..+...|.||+.. |.++---.-.. |.-.||..|--.|-.+. .+ |-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccc-cCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 3456789999974 55543333333 55566666655553322 21 666654
No 189
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=27.76 E-value=90 Score=18.36 Aligned_cols=10 Identities=50% Similarity=0.869 Sum_probs=4.1
Q ss_pred hhHhhHHHHH
Q 039646 15 SPVLLLILVI 24 (325)
Q Consensus 15 sp~iliIi~I 24 (325)
+|++..+++|
T Consensus 2 spiVA~~lLI 11 (26)
T 3j1r_A 2 SPVIATLLLI 11 (26)
T ss_dssp CHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 4444433333
No 190
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=27.55 E-value=10 Score=25.70 Aligned_cols=41 Identities=20% Similarity=0.458 Sum_probs=25.1
Q ss_pred eecccccCCCceeecCCCCceecHHHHHHHHh---cCCCCCcccc
Q 039646 104 VCLCEFSEHDNLRLLPSCSHAFHITCIDTWLL---SNSTCPLCRG 145 (325)
Q Consensus 104 ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~ 145 (325)
||..... +...+..-.|..-||..|+.---. ..-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5766544 323334445889999999863221 2445998875
No 191
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.97 E-value=53 Score=23.97 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=29.2
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
....|+.|-+.+.. . . +.. -+..||.+| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~-~-~~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-A-V-VKA-RDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-C-C-EES-SSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-c-E-EEE-CCceECccC--------CEecCCCCCCCC
Confidence 34579999998875 2 2 222 678999988 569999888754
No 192
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.77 E-value=87 Score=23.19 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=15.1
Q ss_pred CCchhHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 12 SRISPVLLLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 12 ~~isp~iliIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
.++-.+++.+++.++++-+++++++-++..+..|
T Consensus 8 ~n~~~Iv~gvi~gilliGllllliwk~~~~i~Dr 41 (79)
T 2knc_B 8 PDILVVLLSVMGAILLIGLAALLIWKLLITIHDR 41 (79)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444444444444444444444444433
No 193
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=26.61 E-value=30 Score=25.11 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=22.8
Q ss_pred CCCcCceecccccCCCceeecCCC-CceecHHHHHH
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSC-SHAFHITCIDT 132 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C-~H~FH~~CI~~ 132 (325)
+..-|.||.++ ..++.+- | +-+||..|..+
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHH
Confidence 44569999977 3477776 9 78999999665
No 194
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.56 E-value=35 Score=27.03 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=29.1
Q ss_pred CCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 99 PFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 99 ~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
...|+-|-..+.....+.. -+..||..| ..|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3579999998875432332 678999988 56999998886
No 195
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=26.40 E-value=77 Score=21.84 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=17.9
Q ss_pred CCCCchhHhhHHHHHHHHHHHHH
Q 039646 10 ATSRISPVLLLILVIVAVVFFIF 32 (325)
Q Consensus 10 s~~~isp~iliIi~IL~vv~~ii 32 (325)
++-+++|..++++.+++++++++
T Consensus 24 ~giKi~P~~Vl~~si~~i~~V~~ 46 (53)
T 1rh5_C 24 SKIRVKPEHVIGVTVAFVIIEAI 46 (53)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CccccCCeehhhhHHHHHHHHHH
Confidence 47889999988888877766654
No 196
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=25.79 E-value=1e+02 Score=18.50 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHh
Q 039646 31 IFGLVHLLIRYLKK 44 (325)
Q Consensus 31 ii~ll~ll~r~l~r 44 (325)
...+-+.+++|+++
T Consensus 18 flafgfwlfkylqk 31 (32)
T 2lx0_A 18 FLAFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 33444556677654
No 197
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.78 E-value=55 Score=22.48 Aligned_cols=38 Identities=24% Similarity=0.540 Sum_probs=27.3
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
..|+.|-+.+.. +. +.. -+..||..| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTY-REQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-SE--EES-SSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCcccCCeecc-ce--EEE-CccccCCCC--------CccCCCCCcCCc
Confidence 469999988864 22 223 578899888 568899887753
No 198
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=25.66 E-value=17 Score=27.92 Aligned_cols=44 Identities=20% Similarity=0.396 Sum_probs=26.8
Q ss_pred CCCCcCceecccccCCCceeecCCCC---ceecHHHHHHHHhc----CCCCCc-ccc
Q 039646 97 KEPFDCAVCLCEFSEHDNLRLLPSCS---HAFHITCIDTWLLS----NSTCPL-CRG 145 (325)
Q Consensus 97 ~~~~~C~ICle~~~~~~~~~~lp~C~---H~FH~~CI~~Wl~~----~~tCPl-CR~ 145 (325)
.+..-| ||..... ++ ++..-.|. ..||..|+. |.. .-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 345568 8987532 33 33333454 689999986 322 335999 974
No 199
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.81 E-value=37 Score=24.32 Aligned_cols=40 Identities=23% Similarity=0.450 Sum_probs=28.0
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
..|+.|-..+..++.+... -+..||..| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFY--EDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCC--SSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEEe--CCccccccC--------CeecCCCCccCC
Confidence 4699999988743333222 467899888 558899887753
No 200
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.63 E-value=43 Score=24.54 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=29.0
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
....|+.|-+.+. ++.+ .. -+..||..| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VA-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EE-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEE--EE-CCccccccC--------CccCCCCCCCCC
Confidence 3457999999884 3322 22 678999988 569999888764
No 201
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.20 E-value=19 Score=26.17 Aligned_cols=19 Identities=47% Similarity=0.924 Sum_probs=14.2
Q ss_pred HHHHhcCCCCCcccccccC
Q 039646 131 DTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 131 ~~Wl~~~~tCPlCR~~l~~ 149 (325)
++||..--.||.|+.++..
T Consensus 2 d~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKL 20 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEE
T ss_pred ChHHHhheeCCCCCCcCeE
Confidence 4567777889999987754
No 202
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=24.08 E-value=1.5e+02 Score=24.17 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=16.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039646 17 VLLLILVIVAVVFFIFGLVHLLIRYLKKR 45 (325)
Q Consensus 17 ~iliIi~IL~vv~~ii~ll~ll~r~l~rr 45 (325)
++.|++++.+..||++.++.-++|-.++-
T Consensus 53 ylYIL~vmgffgff~~GImLsYiRSKk~E 81 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIRSKKLE 81 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eehHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence 44455555555566666666666655543
No 203
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.66 E-value=50 Score=23.55 Aligned_cols=38 Identities=18% Similarity=0.486 Sum_probs=27.5
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
..|+.|-+.+.. +.+. . -+..||..| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~-~~v~--a-~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS--A-LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCS-CCEE--E-TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEecc-ceEE--E-CCceeCccC--------CccccCCCCCCC
Confidence 479999998873 3332 2 578999888 568899887754
No 204
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.16 E-value=47 Score=23.01 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=10.1
Q ss_pred CCCCcCceecccccC
Q 039646 97 KEPFDCAVCLCEFSE 111 (325)
Q Consensus 97 ~~~~~C~ICle~~~~ 111 (325)
-+-..|++|...+..
T Consensus 8 L~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 8 LEILACPACHAPLEE 22 (56)
T ss_dssp TTSCCCSSSCSCEEE
T ss_pred HhheeCCCCCCccee
Confidence 445678888876543
No 205
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=22.86 E-value=45 Score=28.13 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=10.6
Q ss_pred CceecHHHHHHHHhcCCCCCccccccc
Q 039646 122 SHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 122 ~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
+..||..|..+-+.....|..|...|.
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CccccccccccccccCCccccCCCccc
Confidence 344444444332221113444444443
No 206
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.82 E-value=50 Score=23.65 Aligned_cols=41 Identities=17% Similarity=0.413 Sum_probs=28.9
Q ss_pred CCCcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 98 EPFDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 98 ~~~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
....|+-|-+.+. +..+ .. -+..||..| ..|-.|+.+|...
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--IF-KNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--CC-SSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEec-ceEE--EE-CcceeCCCC--------CEeCCCCCccCCC
Confidence 3457999999887 3222 22 678899888 5699998887643
No 207
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.62 E-value=36 Score=28.47 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=30.0
Q ss_pred CCCcCceecccccC--CCceeecCCCCceecHHHHHHHHhcCCC--CCccccc
Q 039646 98 EPFDCAVCLCEFSE--HDNLRLLPSCSHAFHITCIDTWLLSNST--CPLCRGT 146 (325)
Q Consensus 98 ~~~~C~ICle~~~~--~~~~~~lp~C~H~FH~~CI~~Wl~~~~t--CPlCR~~ 146 (325)
++..|++|...|.. +... +...|.|.+|..|- .|+..... |-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~-~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRR-QCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCE-ECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCC-cCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 45789999998642 2333 34459999999996 24333222 7777653
No 208
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.62 E-value=50 Score=22.59 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=28.0
Q ss_pred cCceecccccCCCceeecCCCCceec--HHHHHHHHhcCCCCCcccccccC
Q 039646 101 DCAVCLCEFSEHDNLRLLPSCSHAFH--ITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 101 ~C~ICle~~~~~~~~~~lp~C~H~FH--~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
.|+-|-+.+..++..+.. -+..|| ..| ..|-.|+.+|..
T Consensus 4 ~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcCCC
Confidence 588999888764333332 578899 888 568889888753
No 209
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=21.81 E-value=51 Score=22.41 Aligned_cols=38 Identities=13% Similarity=0.359 Sum_probs=27.3
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
..|+.|-+.+. ++ . +.. -+..||..| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~-~~-~-~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR-V-VNA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC-E-ECC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ce-E-EEE-CccccccCc--------CEECCCCCCCCC
Confidence 46999998887 33 2 233 578899888 568899888754
No 210
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=21.01 E-value=73 Score=24.79 Aligned_cols=50 Identities=14% Similarity=0.332 Sum_probs=33.5
Q ss_pred CCCcCceecccccC-CCceeecCCCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 98 EPFDCAVCLCEFSE-HDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 98 ~~~~C~ICle~~~~-~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
+-+.|..|...+.. +...... =+..||..|..+-+.....|..|...|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccCc
Confidence 45788889888753 2222222 47789999977755433479999887754
No 211
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.99 E-value=25 Score=27.82 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=15.3
Q ss_pred CCCceecHHHHHHHHhcCCCCCcccccccC
Q 039646 120 SCSHAFHITCIDTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 120 ~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~ 149 (325)
.||+.|. .=+.....||.|+..-..
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 4999981 112234569999875443
No 212
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.86 E-value=93 Score=21.21 Aligned_cols=37 Identities=19% Similarity=0.538 Sum_probs=26.6
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCccccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLS 148 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~ 148 (325)
..|+-|-+.+.. +.+.. -+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 469999988764 33322 578899888 45888988775
No 213
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.84 E-value=19 Score=26.08 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=14.7
Q ss_pred HHHHhcCCCCCcccccccC
Q 039646 131 DTWLLSNSTCPLCRGTLSS 149 (325)
Q Consensus 131 ~~Wl~~~~tCPlCR~~l~~ 149 (325)
++||..--.||.|+.++..
T Consensus 4 d~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEE
T ss_pred CHHHHHHhCCCCCCCcCeE
Confidence 4577777889999987754
No 214
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.74 E-value=77 Score=24.62 Aligned_cols=49 Identities=6% Similarity=0.015 Sum_probs=32.9
Q ss_pred CcCceecccccC-CCceeecCCCCceecHHHHHHHHhcCCCCCcccccccCC
Q 039646 100 FDCAVCLCEFSE-HDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTLSSS 150 (325)
Q Consensus 100 ~~C~ICle~~~~-~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l~~~ 150 (325)
+.|..|-..+.+ +.... .. =+..||..|..+-+.....|-.|...|...
T Consensus 33 F~C~~C~~~L~~~~~~~~-~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-TK-SGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-EE-TTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCcCCCCCcccccCCeEE-EE-CCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 678888877752 12222 22 567889999887665555799998888753
No 215
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.16 E-value=49 Score=24.87 Aligned_cols=39 Identities=23% Similarity=0.615 Sum_probs=20.4
Q ss_pred CcCceecccccCCCceeecCCCCceecHHHHHHHHhcCCCCCcccccc
Q 039646 100 FDCAVCLCEFSEHDNLRLLPSCSHAFHITCIDTWLLSNSTCPLCRGTL 147 (325)
Q Consensus 100 ~~C~ICle~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~l 147 (325)
..|+.|..++...........|+-. +.....||-|.++|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~---------~~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKD---------FSLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCE---------EEEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCCceECcccccc---------CCCcccCcchhhHH
Confidence 4688888776554333322233322 12233577776665
Done!