Query 039647
Match_columns 290
No_of_seqs 373 out of 2226
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 20:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.4E-17 4.8E-22 128.8 5.9 74 132-205 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.5E-16 5E-21 118.2 1.4 63 144-206 5-73 (75)
3 2ect_A Ring finger protein 126 99.5 5.9E-15 2E-19 110.0 5.7 58 153-210 12-69 (78)
4 1iym_A EL5; ring-H2 finger, ub 99.5 2.8E-15 9.5E-20 104.4 3.5 52 153-204 2-54 (55)
5 2ep4_A Ring finger protein 24; 99.5 7.7E-15 2.6E-19 108.3 6.0 56 153-208 12-67 (74)
6 2kiz_A E3 ubiquitin-protein li 99.5 1.2E-14 4.1E-19 105.9 5.4 54 154-207 12-65 (69)
7 1v87_A Deltex protein 2; ring- 99.5 5.2E-14 1.8E-18 112.1 5.9 67 140-206 8-95 (114)
8 2ecm_A Ring finger and CHY zin 99.4 8.4E-14 2.9E-18 96.7 4.4 50 155-204 4-54 (55)
9 2ea6_A Ring finger protein 4; 99.4 1.1E-13 3.9E-18 99.9 4.6 54 152-205 11-68 (69)
10 3ng2_A RNF4, snurf, ring finge 99.4 9.5E-14 3.3E-18 101.2 3.9 55 154-208 8-66 (71)
11 2ecl_A Ring-box protein 2; RNF 99.4 7E-14 2.4E-18 105.8 2.2 52 155-206 14-77 (81)
12 3dpl_R Ring-box protein 1; ubi 99.4 1.8E-13 6E-18 109.3 4.0 50 155-204 36-100 (106)
13 2djb_A Polycomb group ring fin 99.4 4.6E-13 1.6E-17 98.5 5.8 55 152-209 11-66 (72)
14 2xeu_A Ring finger protein 4; 99.4 1.9E-13 6.5E-18 97.4 3.3 54 155-208 2-59 (64)
15 2ct2_A Tripartite motif protei 99.4 7.1E-13 2.4E-17 100.3 5.7 57 151-207 10-70 (88)
16 2ecn_A Ring finger protein 141 99.3 3E-13 1E-17 98.7 2.0 53 153-209 12-64 (70)
17 2yur_A Retinoblastoma-binding 99.3 1.5E-12 5.2E-17 96.4 5.6 54 152-208 11-67 (74)
18 2d8t_A Dactylidin, ring finger 99.3 5.9E-13 2E-17 97.7 3.0 50 154-206 13-62 (71)
19 1chc_A Equine herpes virus-1 r 99.3 1.4E-12 4.7E-17 94.4 4.5 49 155-205 4-52 (68)
20 2ysl_A Tripartite motif-contai 99.3 1.4E-12 4.8E-17 95.5 4.5 53 152-207 16-71 (73)
21 2ecy_A TNF receptor-associated 99.3 2E-12 6.8E-17 93.4 4.8 52 153-207 12-64 (66)
22 2d8s_A Cellular modulator of i 99.3 2.8E-12 9.5E-17 97.4 5.1 52 155-207 14-72 (80)
23 2csy_A Zinc finger protein 183 99.3 2.5E-12 8.6E-17 96.5 4.4 48 154-204 13-60 (81)
24 1t1h_A Gspef-atpub14, armadill 99.3 3.2E-12 1.1E-16 95.0 4.8 52 153-207 5-57 (78)
25 2ecw_A Tripartite motif-contai 99.3 5.6E-12 1.9E-16 94.3 5.8 53 152-207 15-73 (85)
26 4ayc_A E3 ubiquitin-protein li 99.2 2.1E-12 7.2E-17 106.7 3.4 49 155-206 52-100 (138)
27 2ecv_A Tripartite motif-contai 99.2 6.4E-12 2.2E-16 93.9 5.6 53 152-207 15-73 (85)
28 2egp_A Tripartite motif-contai 99.2 2.2E-12 7.5E-17 95.8 2.0 53 152-207 8-67 (79)
29 4a0k_B E3 ubiquitin-protein li 99.2 1.1E-12 3.7E-17 106.6 0.2 51 155-205 47-112 (117)
30 3lrq_A E3 ubiquitin-protein li 99.2 2.3E-12 7.9E-17 101.0 2.0 51 154-207 20-72 (100)
31 2ysj_A Tripartite motif-contai 99.2 8.5E-12 2.9E-16 89.1 4.6 45 152-199 16-63 (63)
32 4ap4_A E3 ubiquitin ligase RNF 99.2 8.7E-12 3E-16 100.5 3.4 56 154-209 5-64 (133)
33 3ztg_A E3 ubiquitin-protein li 99.2 1.7E-11 5.9E-16 93.8 4.7 50 152-204 9-61 (92)
34 2ct0_A Non-SMC element 1 homol 99.2 1.8E-11 6E-16 91.8 4.4 52 156-209 15-68 (74)
35 2ecj_A Tripartite motif-contai 99.2 1.7E-11 5.7E-16 85.7 3.7 45 152-199 11-58 (58)
36 2ckl_A Polycomb group ring fin 99.2 1.3E-11 4.6E-16 97.5 3.6 51 153-206 12-63 (108)
37 2y43_A E3 ubiquitin-protein li 99.1 1.9E-11 6.4E-16 95.1 3.8 49 155-206 21-70 (99)
38 3fl2_A E3 ubiquitin-protein li 99.1 2.3E-11 7.7E-16 98.5 4.1 48 155-205 51-99 (124)
39 1jm7_A BRCA1, breast cancer ty 99.1 4.3E-11 1.5E-15 94.4 4.9 51 155-208 20-73 (112)
40 1g25_A CDK-activating kinase a 99.1 4.1E-11 1.4E-15 86.2 4.3 54 155-208 2-58 (65)
41 4ap4_A E3 ubiquitin ligase RNF 99.1 3.2E-11 1.1E-15 97.2 3.0 53 155-207 71-127 (133)
42 2ckl_B Ubiquitin ligase protei 99.1 2.5E-11 8.7E-16 102.8 2.4 48 155-205 53-102 (165)
43 3hct_A TNF receptor-associated 99.1 5.1E-11 1.7E-15 95.8 2.8 51 153-206 15-66 (118)
44 1z6u_A NP95-like ring finger p 99.1 8.6E-11 2.9E-15 98.9 4.2 49 155-206 77-126 (150)
45 1rmd_A RAG1; V(D)J recombinati 99.1 2E-11 6.9E-16 97.6 0.3 50 155-207 22-72 (116)
46 2kr4_A Ubiquitin conjugation f 99.0 9.3E-11 3.2E-15 89.5 3.8 52 153-207 11-62 (85)
47 3l11_A E3 ubiquitin-protein li 99.0 1.8E-11 6.2E-16 97.7 -0.6 49 154-205 13-62 (115)
48 2kre_A Ubiquitin conjugation f 99.0 1.5E-10 5.2E-15 91.1 4.2 53 153-208 26-78 (100)
49 2y1n_A E3 ubiquitin-protein li 99.0 9.6E-11 3.3E-15 112.5 3.7 49 156-207 332-381 (389)
50 1e4u_A Transcriptional repress 99.0 3.2E-10 1.1E-14 85.5 5.8 57 152-209 7-66 (78)
51 1wgm_A Ubiquitin conjugation f 99.0 1.7E-10 5.8E-15 90.5 4.3 53 153-208 19-72 (98)
52 3knv_A TNF receptor-associated 98.9 1.7E-10 5.8E-15 96.1 2.1 52 152-206 27-79 (141)
53 1jm7_B BARD1, BRCA1-associated 98.9 1.5E-10 5.3E-15 92.8 0.9 47 155-206 21-68 (117)
54 1bor_A Transcription factor PM 98.9 4.3E-10 1.5E-14 79.0 2.3 47 155-207 5-51 (56)
55 2vje_A E3 ubiquitin-protein li 98.9 6.8E-10 2.3E-14 80.3 2.9 47 155-204 7-56 (64)
56 2c2l_A CHIP, carboxy terminus 98.9 6.3E-10 2.2E-14 100.1 3.1 53 152-207 204-257 (281)
57 4ic3_A E3 ubiquitin-protein li 98.8 4.4E-10 1.5E-14 83.3 0.4 44 155-205 23-67 (74)
58 2yu4_A E3 SUMO-protein ligase 98.8 1.1E-09 3.8E-14 84.8 2.3 51 154-207 5-65 (94)
59 2vje_B MDM4 protein; proto-onc 98.8 2.6E-09 8.8E-14 76.9 2.9 46 156-204 7-55 (63)
60 3hcs_A TNF receptor-associated 98.8 2.6E-09 8.9E-14 90.7 3.4 51 153-206 15-66 (170)
61 2f42_A STIP1 homology and U-bo 98.7 8.8E-09 3E-13 89.3 4.3 53 152-207 102-155 (179)
62 2ecg_A Baculoviral IAP repeat- 98.7 1.1E-08 3.9E-13 75.7 3.4 45 156-207 25-70 (75)
63 3k1l_B Fancl; UBC, ring, RWD, 98.6 7.2E-09 2.5E-13 97.9 1.6 51 155-205 307-373 (381)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.6 3.6E-08 1.2E-12 70.6 4.3 48 155-205 5-59 (60)
65 2ea5_A Cell growth regulator w 98.6 4.6E-08 1.6E-12 71.5 4.0 47 155-208 14-61 (68)
66 1wim_A KIAA0161 protein; ring 98.5 3.5E-08 1.2E-12 75.9 2.8 48 155-202 4-61 (94)
67 2bay_A PRE-mRNA splicing facto 98.5 3.7E-08 1.3E-12 70.7 2.4 51 157-210 4-55 (61)
68 3t6p_A Baculoviral IAP repeat- 98.5 1.6E-08 5.4E-13 95.9 -0.1 45 154-205 293-338 (345)
69 2yho_A E3 ubiquitin-protein li 98.5 3E-08 1E-12 74.5 1.2 45 156-207 18-63 (79)
70 3htk_C E3 SUMO-protein ligase 98.4 7.6E-08 2.6E-12 87.9 2.1 52 155-208 180-235 (267)
71 3nw0_A Non-structural maintena 98.1 3.5E-06 1.2E-10 75.9 5.9 50 156-208 180-232 (238)
72 3vk6_A E3 ubiquitin-protein li 98.0 3.9E-06 1.3E-10 65.8 3.2 47 158-206 3-50 (101)
73 2ko5_A Ring finger protein Z; 95.6 0.0074 2.5E-07 46.7 3.0 57 148-209 20-77 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.7 0.011 3.9E-07 45.1 1.9 36 155-190 2-37 (101)
75 1wil_A KIAA1045 protein; ring 93.4 0.067 2.3E-06 40.5 3.8 38 151-189 10-47 (89)
76 2lri_C Autoimmune regulator; Z 92.3 0.088 3E-06 37.9 2.9 43 156-202 12-59 (66)
77 2l5u_A Chromodomain-helicase-D 87.7 0.25 8.4E-06 34.7 2.0 45 154-202 9-58 (61)
78 1we9_A PHD finger family prote 86.1 0.11 3.6E-06 36.7 -0.7 47 155-201 5-57 (64)
79 1fp0_A KAP-1 corepressor; PHD 84.4 0.36 1.2E-05 36.8 1.5 45 154-202 23-72 (88)
80 1mm2_A MI2-beta; PHD, zinc fin 84.1 0.3 1E-05 34.3 0.9 45 155-202 8-56 (61)
81 3m62_A Ubiquitin conjugation f 83.5 0.57 2E-05 49.6 3.1 50 156-208 891-941 (968)
82 1f62_A Transcription factor WS 83.2 0.36 1.2E-05 32.3 1.0 43 158-201 2-49 (51)
83 1wep_A PHF8; structural genomi 82.4 1.2 4.1E-05 32.6 3.7 46 157-203 13-64 (79)
84 3i2d_A E3 SUMO-protein ligase 82.4 1.1 3.9E-05 42.4 4.4 85 118-207 205-302 (371)
85 3lqh_A Histone-lysine N-methyl 80.2 0.55 1.9E-05 40.3 1.3 48 157-204 3-65 (183)
86 4fo9_A E3 SUMO-protein ligase 79.8 1.6 5.3E-05 41.3 4.3 86 118-208 171-269 (360)
87 2l43_A N-teminal domain from h 79.0 0.46 1.6E-05 35.9 0.4 58 150-207 19-80 (88)
88 2k16_A Transcription initiatio 78.6 0.5 1.7E-05 34.2 0.4 48 156-204 18-70 (75)
89 3u5n_A E3 ubiquitin-protein li 78.3 0.36 1.2E-05 41.8 -0.5 44 156-203 7-55 (207)
90 3o36_A Transcription intermedi 78.1 0.48 1.7E-05 40.1 0.3 45 155-203 3-52 (184)
91 2yql_A PHD finger protein 21A; 77.0 0.19 6.3E-06 34.6 -2.2 43 155-201 8-55 (56)
92 2ysm_A Myeloid/lymphoid or mix 76.3 0.55 1.9E-05 36.5 0.1 46 155-200 6-55 (111)
93 1xwh_A Autoimmune regulator; P 74.6 0.55 1.9E-05 33.4 -0.3 43 155-201 7-54 (66)
94 1wev_A Riken cDNA 1110020M19; 73.7 0.5 1.7E-05 35.6 -0.8 52 156-207 16-77 (88)
95 2puy_A PHD finger protein 21A; 73.0 0.2 6.7E-06 35.0 -3.0 45 155-203 4-53 (60)
96 3v43_A Histone acetyltransfera 71.9 0.83 2.8E-05 35.7 0.1 45 157-201 62-111 (112)
97 2kgg_A Histone demethylase jar 71.2 1.2 4.1E-05 30.1 0.8 43 158-200 4-52 (52)
98 1dvp_A HRS, hepatocyte growth 70.6 3.2 0.00011 35.9 3.7 34 155-188 160-194 (220)
99 2yw8_A RUN and FYVE domain-con 68.8 2.7 9.1E-05 31.0 2.4 35 154-188 17-52 (82)
100 2lv9_A Histone-lysine N-methyl 68.5 1.2 4.1E-05 34.1 0.4 44 157-201 29-75 (98)
101 2ro1_A Transcription intermedi 68.0 1.1 3.9E-05 38.2 0.2 44 156-202 2-49 (189)
102 2vpb_A Hpygo1, pygopus homolog 67.9 2.9 9.9E-05 29.7 2.3 32 156-187 8-41 (65)
103 2ri7_A Nucleosome-remodeling f 67.8 1.1 3.7E-05 37.4 -0.0 47 155-202 7-59 (174)
104 2cs3_A Protein C14ORF4, MY039 67.4 6.8 0.00023 29.4 4.2 36 156-192 15-52 (93)
105 3v43_A Histone acetyltransfera 67.1 5.9 0.0002 30.7 4.2 46 155-200 4-62 (112)
106 1weo_A Cellulose synthase, cat 66.4 35 0.0012 25.9 8.1 51 155-205 15-70 (93)
107 1z2q_A LM5-1; membrane protein 66.4 1.9 6.5E-05 32.0 1.1 35 155-189 20-55 (84)
108 1joc_A EEA1, early endosomal a 65.8 5.1 0.00017 31.9 3.6 35 154-188 67-102 (125)
109 2e6r_A Jumonji/ARID domain-con 65.4 0.43 1.5E-05 36.3 -2.7 48 154-202 14-66 (92)
110 2xb1_A Pygopus homolog 2, B-ce 64.6 2.5 8.5E-05 32.8 1.5 47 157-203 4-62 (105)
111 2yt5_A Metal-response element- 62.8 2.8 9.5E-05 29.3 1.4 49 155-203 5-62 (66)
112 3t7l_A Zinc finger FYVE domain 62.8 4.1 0.00014 30.5 2.4 49 155-203 19-74 (90)
113 3shb_A E3 ubiquitin-protein li 61.4 1 3.6E-05 33.2 -1.2 43 158-201 28-76 (77)
114 1y02_A CARP2, FYVE-ring finger 60.4 0.91 3.1E-05 36.4 -1.8 47 156-202 19-66 (120)
115 1z60_A TFIIH basal transcripti 59.2 3.6 0.00012 28.8 1.4 42 157-199 16-58 (59)
116 2lbm_A Transcriptional regulat 59.1 6.4 0.00022 32.3 3.1 42 156-201 63-116 (142)
117 1weu_A Inhibitor of growth fam 58.9 4.6 0.00016 30.6 2.1 42 156-202 36-85 (91)
118 2dj7_A Actin-binding LIM prote 58.6 6.6 0.00023 28.3 2.8 42 153-204 12-53 (80)
119 1vfy_A Phosphatidylinositol-3- 58.0 5.7 0.0002 28.5 2.4 32 156-187 11-43 (73)
120 1x4u_A Zinc finger, FYVE domai 56.8 6 0.00021 29.1 2.4 33 155-187 13-46 (84)
121 1wfk_A Zinc finger, FYVE domai 56.0 5.7 0.00019 29.7 2.1 49 156-204 9-65 (88)
122 3zyq_A Hepatocyte growth facto 54.5 5.2 0.00018 34.9 2.0 35 155-189 163-198 (226)
123 1wen_A Inhibitor of growth fam 54.2 5.9 0.0002 28.5 1.9 42 156-202 16-65 (71)
124 2co8_A NEDD9 interacting prote 53.8 13 0.00045 26.7 3.8 43 155-207 14-56 (82)
125 3mpx_A FYVE, rhogef and PH dom 53.6 2.8 9.5E-05 39.4 0.0 48 156-203 375-430 (434)
126 1iml_A CRIP, cysteine rich int 53.0 6.3 0.00022 27.7 1.9 38 158-205 2-39 (76)
127 4ayb_P DNA-directed RNA polyme 52.9 4.9 0.00017 27.0 1.1 17 1-17 22-38 (48)
128 3kqi_A GRC5, PHD finger protei 52.6 4 0.00014 29.4 0.7 51 153-203 6-62 (75)
129 2m0e_A Zinc finger and BTB dom 52.4 5.6 0.00019 21.0 1.2 13 2-14 2-14 (29)
130 2cu8_A Cysteine-rich protein 2 52.2 7.8 0.00027 27.2 2.3 41 156-206 9-49 (76)
131 2ku3_A Bromodomain-containing 51.7 11 0.00039 27.0 3.1 48 154-201 14-65 (71)
132 1zbd_B Rabphilin-3A; G protein 50.4 6.6 0.00023 31.8 1.8 33 155-187 54-88 (134)
133 1zfo_A LAsp-1; LIM domain, zin 49.4 7.7 0.00026 23.2 1.6 28 157-186 4-31 (31)
134 2e6s_A E3 ubiquitin-protein li 48.4 2.8 9.6E-05 30.7 -0.7 44 157-201 27-76 (77)
135 3asl_A E3 ubiquitin-protein li 47.0 3.2 0.00011 29.8 -0.6 43 158-201 20-68 (70)
136 2ysm_A Myeloid/lymphoid or mix 46.9 2 6.8E-05 33.2 -1.8 44 157-201 55-103 (111)
137 1ard_A Yeast transcription fac 46.8 6.6 0.00023 20.9 0.9 12 3-14 3-14 (29)
138 1wew_A DNA-binding family prot 46.7 3.9 0.00013 29.7 -0.1 46 156-202 16-72 (78)
139 2kwj_A Zinc finger protein DPF 46.7 11 0.00038 29.2 2.5 33 157-189 2-41 (114)
140 1p7a_A BF3, BKLF, kruppel-like 46.0 8 0.00027 22.2 1.3 13 2-14 11-23 (37)
141 4gne_A Histone-lysine N-methyl 45.5 11 0.00036 29.4 2.2 48 153-206 12-66 (107)
142 1znf_A 31ST zinc finger from X 45.4 7.2 0.00025 20.4 0.9 12 3-14 2-13 (27)
143 2d8v_A Zinc finger FYVE domain 45.3 7.2 0.00025 28.0 1.1 30 155-188 7-37 (67)
144 3ql9_A Transcriptional regulat 44.7 16 0.00056 29.4 3.3 42 156-201 57-110 (129)
145 2d8y_A Eplin protein; LIM doma 44.4 19 0.00067 26.1 3.5 42 155-206 14-55 (91)
146 3ask_A E3 ubiquitin-protein li 44.4 3.7 0.00013 36.3 -0.7 44 157-201 175-224 (226)
147 1klr_A Zinc finger Y-chromosom 43.8 8.9 0.00031 20.3 1.2 13 2-14 2-14 (30)
148 2kwj_A Zinc finger protein DPF 43.6 1.1 3.9E-05 35.0 -3.7 46 157-203 59-109 (114)
149 2lvu_A Zinc finger and BTB dom 49.0 5.1 0.00017 21.1 0.0 13 3-15 3-15 (26)
150 1paa_A Yeast transcription fac 41.9 8.7 0.0003 20.6 0.9 13 2-14 2-14 (30)
151 1wem_A Death associated transc 41.4 7.7 0.00026 27.8 0.8 44 157-202 17-70 (76)
152 3ga8_A HTH-type transcriptiona 40.6 11 0.00037 27.2 1.5 17 2-18 2-19 (78)
153 2kvh_A Zinc finger and BTB dom 40.2 6.4 0.00022 20.9 0.1 12 3-14 4-15 (27)
154 1wyh_A SLIM 2, skeletal muscle 40.0 20 0.00069 24.5 2.8 42 156-206 5-46 (72)
155 2kfq_A FP1; protein, de novo p 39.8 10 0.00035 21.3 1.0 14 3-16 3-16 (32)
156 1x63_A Skeletal muscle LIM-pro 39.7 23 0.0008 24.9 3.2 42 156-206 15-56 (82)
157 3f6q_B LIM and senescent cell 39.0 10 0.00036 25.8 1.2 42 156-206 11-52 (72)
158 2elx_A Zinc finger protein 406 38.7 6.9 0.00024 22.0 0.1 12 3-14 8-19 (35)
159 1rim_A E6APC2 peptide; E6-bind 38.6 12 0.00042 21.1 1.2 12 3-14 3-14 (33)
160 1rik_A E6APC1 peptide; E6-bind 37.7 7.4 0.00025 20.7 0.1 12 3-14 3-14 (29)
161 2l3k_A Rhombotin-2, linker, LI 37.0 23 0.00078 27.4 3.0 27 158-185 10-36 (123)
162 2kvf_A Zinc finger and BTB dom 36.7 8.1 0.00028 20.5 0.2 12 3-14 4-15 (28)
163 2elr_A Zinc finger protein 406 36.4 12 0.0004 21.2 0.9 12 3-14 10-21 (36)
164 2cor_A Pinch protein; LIM doma 36.3 35 0.0012 24.1 3.7 40 156-206 15-54 (79)
165 2lvt_A Zinc finger and BTB dom 42.5 7.5 0.00026 20.8 0.0 13 3-15 3-15 (29)
166 1a7i_A QCRP2 (LIM1); LIM domai 36.2 7.2 0.00025 27.8 -0.1 41 156-206 7-47 (81)
167 1x4k_A Skeletal muscle LIM-pro 36.1 22 0.00074 24.3 2.5 41 157-206 6-46 (72)
168 2o35_A Hypothetical protein DU 35.9 14 0.00048 28.6 1.5 11 181-191 43-53 (105)
169 1wee_A PHD finger family prote 35.7 11 0.00038 26.7 0.9 46 156-202 16-66 (72)
170 3fyb_A Protein of unknown func 35.6 14 0.00049 28.5 1.5 11 181-191 42-52 (104)
171 2m0f_A Zinc finger and BTB dom 35.1 8.5 0.00029 20.3 0.1 12 3-14 3-14 (29)
172 1x4l_A Skeletal muscle LIM-pro 34.8 29 0.00098 23.8 2.9 41 156-205 5-47 (72)
173 2m0d_A Zinc finger and BTB dom 34.3 9.2 0.00031 20.3 0.2 12 3-14 4-15 (30)
174 2elq_A Zinc finger protein 406 33.9 9.2 0.00032 21.8 0.1 12 3-14 10-21 (36)
175 2lvr_A Zinc finger and BTB dom 40.0 8.7 0.0003 20.5 0.0 13 3-15 4-16 (30)
176 1srk_A Zinc finger protein ZFP 33.6 9.6 0.00033 21.5 0.2 12 3-14 8-19 (35)
177 2kvg_A Zinc finger and BTB dom 33.6 5.5 0.00019 21.3 -0.9 12 3-14 4-15 (27)
178 2elt_A Zinc finger protein 406 33.4 9.5 0.00032 21.6 0.1 12 3-14 10-21 (36)
179 1nyp_A Pinch protein; LIM doma 33.4 21 0.00073 24.0 2.0 38 157-205 6-43 (66)
180 2jne_A Hypothetical protein YF 33.3 11 0.00038 29.1 0.5 40 157-204 33-72 (101)
181 2e72_A POGO transposable eleme 33.2 18 0.0006 24.4 1.4 12 2-13 12-23 (49)
182 2elm_A Zinc finger protein 406 32.8 11 0.00036 21.9 0.3 13 3-15 10-22 (37)
183 2vnf_A ING 4, P29ING4, inhibit 32.8 6.2 0.00021 27.3 -0.9 41 156-201 10-58 (60)
184 2elp_A Zinc finger protein 406 32.5 10 0.00034 21.8 0.1 12 3-14 10-21 (37)
185 1x61_A Thyroid receptor intera 32.1 34 0.0012 23.3 3.0 39 157-204 6-44 (72)
186 1x62_A C-terminal LIM domain p 32.0 24 0.00084 24.8 2.2 39 155-204 14-52 (79)
187 3c6w_A P28ING5, inhibitor of g 31.9 6.8 0.00023 27.1 -0.8 41 156-201 9-57 (59)
188 1x64_A Alpha-actinin-2 associa 31.4 33 0.0011 24.7 2.9 40 156-206 25-64 (89)
189 1x6a_A LIMK-2, LIM domain kina 31.3 31 0.0011 24.2 2.7 38 157-205 16-53 (81)
190 2zet_C Melanophilin; complex, 31.2 20 0.0007 29.5 1.9 46 155-201 67-116 (153)
191 2elv_A Zinc finger protein 406 30.8 11 0.00039 21.4 0.2 12 3-14 10-21 (36)
192 2els_A Zinc finger protein 406 30.7 11 0.00039 21.4 0.2 12 3-14 10-21 (36)
193 1x68_A FHL5 protein; four-and- 30.0 32 0.0011 23.9 2.6 39 157-204 6-46 (76)
194 1wd2_A Ariadne-1 protein homol 30.0 7.6 0.00026 27.0 -0.8 36 157-192 7-47 (60)
195 1g47_A Pinch protein; LIM doma 30.0 28 0.00095 24.1 2.2 42 156-206 11-52 (77)
196 2en7_A Zinc finger protein 268 29.9 20 0.00068 21.3 1.2 13 3-15 13-25 (44)
197 2gmg_A Hypothetical protein PF 29.7 13 0.00043 29.1 0.3 29 172-205 68-96 (105)
198 2ytb_A Zinc finger protein 32; 29.6 20 0.0007 20.9 1.2 13 3-15 12-24 (42)
199 2dar_A PDZ and LIM domain prot 29.6 26 0.0009 25.3 2.1 40 156-206 25-64 (90)
200 1v6g_A Actin binding LIM prote 29.5 30 0.001 24.3 2.4 39 157-206 16-54 (81)
201 2yti_A Zinc finger protein 347 29.1 21 0.00071 21.5 1.2 13 3-15 13-25 (46)
202 2enf_A Zinc finger protein 347 28.8 18 0.00062 21.8 0.9 13 3-15 13-25 (46)
203 2k5c_A Uncharacterized protein 28.5 13 0.00044 27.9 0.2 11 3-13 52-62 (95)
204 2eoh_A Zinc finger protein 28 28.3 22 0.00074 21.5 1.2 12 3-14 13-24 (46)
205 1njq_A Superman protein; zinc- 27.7 14 0.00047 21.5 0.2 12 3-14 7-18 (39)
206 2jz8_A Uncharacterized protein 27.6 15 0.00051 27.7 0.4 16 2-17 48-63 (87)
207 2jvm_A Uncharacterized protein 27.6 13 0.00043 27.7 -0.0 15 2-16 53-67 (80)
208 2yte_A Zinc finger protein 473 27.5 20 0.00068 21.0 0.9 12 3-14 11-22 (42)
209 2emz_A ZFP-95, zinc finger pro 27.3 23 0.00079 21.3 1.2 12 3-14 13-24 (46)
210 2eq1_A Zinc finger protein 347 27.3 23 0.00078 21.3 1.2 12 3-14 13-24 (46)
211 2eos_A B-cell lymphoma 6 prote 27.1 24 0.00083 20.7 1.3 13 3-15 12-24 (42)
212 2d8x_A Protein pinch; LIM doma 27.0 22 0.00075 24.3 1.2 40 156-206 5-44 (70)
213 2yrm_A B-cell lymphoma 6 prote 27.0 24 0.00084 21.0 1.3 12 3-14 11-22 (43)
214 2eq2_A Zinc finger protein 347 26.8 25 0.00085 21.1 1.3 12 3-14 13-24 (46)
215 2yth_A Zinc finger protein 224 26.8 25 0.00084 21.2 1.3 13 3-15 13-25 (46)
216 3kv4_A PHD finger protein 8; e 26.7 9.4 0.00032 37.0 -1.1 50 157-206 5-60 (447)
217 2ep1_A Zinc finger protein 484 26.6 25 0.00084 21.1 1.2 12 3-14 13-24 (46)
218 2elo_A Zinc finger protein 406 26.5 10 0.00035 21.7 -0.6 12 3-14 10-21 (37)
219 1vd4_A Transcription initiatio 26.5 22 0.00075 23.5 1.0 16 3-18 40-55 (62)
220 2l4z_A DNA endonuclease RBBP8, 26.3 27 0.00092 27.2 1.7 39 156-204 61-99 (123)
221 2eom_A ZFP-95, zinc finger pro 25.7 26 0.00089 21.2 1.2 12 3-14 13-24 (46)
222 2d8z_A Four and A half LIM dom 25.7 47 0.0016 22.4 2.7 38 157-205 6-43 (70)
223 2kpi_A Uncharacterized protein 25.6 28 0.00095 23.8 1.5 15 155-169 9-23 (56)
224 2emg_A Zinc finger protein 484 25.6 22 0.00077 21.3 0.9 13 3-15 13-25 (46)
225 3mjh_B Early endosome antigen 25.5 20 0.00068 22.3 0.6 11 195-205 7-17 (34)
226 2eoq_A Zinc finger protein 224 25.5 26 0.0009 21.0 1.2 12 3-14 13-24 (46)
227 2ct7_A Ring finger protein 31; 25.3 7 0.00024 28.8 -1.9 36 159-194 28-66 (86)
228 1qxf_A GR2, 30S ribosomal prot 25.2 13 0.00046 26.5 -0.3 7 2-8 7-13 (66)
229 2eou_A Zinc finger protein 473 25.2 27 0.00092 20.8 1.2 12 3-14 13-24 (44)
230 2epx_A Zinc finger protein 28 25.0 28 0.00095 20.9 1.3 13 3-15 13-25 (47)
231 2jvx_A NF-kappa-B essential mo 24.9 21 0.00072 21.2 0.6 13 194-206 4-16 (28)
232 2enh_A Zinc finger protein 28 24.5 24 0.00083 21.3 0.9 12 3-14 13-24 (46)
233 2epv_A Zinc finger protein 268 24.3 17 0.0006 21.8 0.2 12 3-14 13-24 (44)
234 2em6_A Zinc finger protein 224 24.3 25 0.00085 21.2 0.9 12 3-14 13-24 (46)
235 2em0_A Zinc finger protein 224 24.1 29 0.00099 20.8 1.2 13 3-15 13-25 (46)
236 2el5_A Zinc finger protein 268 24.0 18 0.00061 21.3 0.2 12 3-14 11-22 (42)
237 2ytr_A Zinc finger protein 347 23.4 30 0.001 20.7 1.2 12 3-14 13-24 (46)
238 2eop_A Zinc finger protein 268 23.4 26 0.0009 20.9 0.9 12 3-14 13-24 (46)
239 2eon_A ZFP-95, zinc finger pro 23.2 27 0.00092 21.1 0.9 13 3-15 13-25 (46)
240 2epc_A Zinc finger protein 32; 23.1 19 0.00065 21.1 0.2 12 3-14 12-23 (42)
241 2en2_A B-cell lymphoma 6 prote 23.1 19 0.00065 21.2 0.2 12 3-14 12-23 (42)
242 2eov_A Zinc finger protein 484 23.0 27 0.00093 20.9 0.9 12 3-14 13-24 (46)
243 2yu5_A Zinc finger protein 473 23.0 19 0.00064 21.5 0.1 13 3-15 13-25 (44)
244 2ept_A Zinc finger protein 32; 22.9 19 0.00066 21.0 0.2 12 3-14 11-22 (41)
245 2emi_A Zinc finger protein 484 22.9 19 0.00066 21.7 0.2 12 3-14 13-24 (46)
246 2emk_A Zinc finger protein 28 22.6 28 0.00096 20.9 0.9 12 3-14 13-24 (46)
247 3j20_W 30S ribosomal protein S 22.6 16 0.00056 25.9 -0.2 9 1-9 14-22 (63)
248 2ehe_A Four and A half LIM dom 22.5 66 0.0023 22.4 3.1 40 157-205 16-55 (82)
249 2en9_A Zinc finger protein 28 22.5 28 0.00096 20.9 0.9 12 3-14 13-24 (46)
250 2epz_A Zinc finger protein 28 22.4 33 0.0011 20.5 1.3 12 3-14 13-24 (46)
251 2ytn_A Zinc finger protein 347 22.2 29 0.00098 20.8 0.9 12 3-14 13-24 (46)
252 2ely_A Zinc finger protein 224 22.2 34 0.0012 20.5 1.3 12 3-14 13-24 (46)
253 2ytq_A Zinc finger protein 268 22.1 29 0.00099 20.9 0.9 13 3-15 13-25 (46)
254 2en3_A ZFP-95, zinc finger pro 22.1 21 0.0007 21.5 0.2 12 3-14 13-24 (46)
255 2pk7_A Uncharacterized protein 22.0 19 0.00064 25.8 -0.0 20 187-206 2-21 (69)
256 1wig_A KIAA1808 protein; LIM d 22.0 56 0.0019 22.6 2.6 37 157-204 6-42 (73)
257 2eq4_A Zinc finger protein 224 22.0 26 0.00089 21.0 0.7 12 3-14 13-24 (46)
258 2rgt_A Fusion of LIM/homeobox 22.0 40 0.0014 27.3 2.0 39 157-204 66-104 (169)
259 2yts_A Zinc finger protein 484 21.9 21 0.00071 21.4 0.2 13 3-15 13-25 (46)
260 2eof_A Zinc finger protein 268 21.5 21 0.00073 21.1 0.2 12 3-14 13-24 (44)
261 2elz_A Zinc finger protein 224 21.4 31 0.0011 20.7 0.9 12 3-14 13-24 (46)
262 2emb_A Zinc finger protein 473 21.3 22 0.00074 21.2 0.2 12 3-14 13-24 (44)
263 2ytf_A Zinc finger protein 268 21.2 22 0.00075 21.3 0.2 12 3-14 13-24 (46)
264 3iuf_A Zinc finger protein UBI 21.1 22 0.00075 22.1 0.2 12 3-14 8-19 (48)
265 2jrr_A Uncharacterized protein 21.0 14 0.00046 26.6 -0.9 15 2-16 40-54 (67)
266 2yrj_A Zinc finger protein 473 20.9 22 0.00077 21.3 0.2 13 3-15 13-25 (46)
267 1m3v_A FLIN4, fusion of the LI 20.8 67 0.0023 24.5 3.0 50 157-207 33-83 (122)
268 2ytp_A Zinc finger protein 484 20.7 23 0.00078 21.4 0.2 12 3-14 13-24 (46)
269 2em4_A Zinc finger protein 28 20.5 23 0.00079 21.4 0.2 12 3-14 13-24 (46)
270 2eoy_A Zinc finger protein 473 20.5 23 0.00079 21.4 0.2 12 3-14 13-24 (46)
271 2eow_A Zinc finger protein 347 20.5 23 0.00079 21.2 0.2 12 3-14 13-24 (46)
272 2ytt_A Zinc finger protein 473 20.4 38 0.0013 20.3 1.2 12 3-14 13-24 (46)
273 2eor_A Zinc finger protein 224 20.4 23 0.00079 21.2 0.2 12 3-14 13-24 (46)
274 2jrp_A Putative cytoplasmic pr 20.4 32 0.0011 25.5 1.0 13 157-169 3-15 (81)
275 3o70_A PHD finger protein 13; 20.2 37 0.0013 23.9 1.2 44 156-201 19-66 (68)
276 2yto_A Zinc finger protein 484 20.2 24 0.00081 21.3 0.2 12 3-14 13-24 (46)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=128.81 Aligned_cols=74 Identities=31% Similarity=0.751 Sum_probs=66.0
Q ss_pred CCCCCCCcchHHHHHhCCccccCC-------cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 132 PNRYGSLSAQKEVVKALPMVAIDQ-------DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 132 ~~~~~~~pa~~~~i~~lp~~~~~~-------~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
.......+++++.|++||.+.+.+ ...|+||++.|..++.++.|||+|.||..||..||+.+.+||+||..+.
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 345678899999999999987753 4689999999999888999999999999999999999999999999886
Q ss_pred C
Q 039647 205 S 205 (290)
Q Consensus 205 ~ 205 (290)
.
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-16 Score=118.23 Aligned_cols=63 Identities=27% Similarity=0.647 Sum_probs=53.9
Q ss_pred HHHhCCccccC------CcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 144 VVKALPMVAID------QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 144 ~i~~lp~~~~~------~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
.|++||..++. +...|+||++.|..++.++.|||+|.||..||.+||+.+.+||+||..+...
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34566766553 3579999999999988889999999999999999999999999999988654
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=5.9e-15 Score=110.02 Aligned_cols=58 Identities=40% Similarity=0.988 Sum_probs=51.3
Q ss_pred cCCcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCCccc
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDNLKV 210 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~~~ 210 (290)
..+...|+||++.|..+..++.|+|+|.||..||.+|++.+.+||+||..+...+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 3456899999999998888888999999999999999999999999999988766543
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.53 E-value=2.8e-15 Score=104.43 Aligned_cols=52 Identities=44% Similarity=0.944 Sum_probs=47.5
Q ss_pred cCCcccccccccccccCCcceecC-CCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
+++..+|+||++.|..++.+..++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 345789999999999988889998 9999999999999999999999999874
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7.7e-15 Score=108.31 Aligned_cols=56 Identities=36% Similarity=0.737 Sum_probs=49.6
Q ss_pred cCCcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCCc
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDNL 208 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~ 208 (290)
+.....|+||++.|..+..++.|+|+|.||..||.+|++.+.+||+||..+.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 34578999999999988888889999999999999999999999999998876443
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=105.89 Aligned_cols=54 Identities=30% Similarity=0.754 Sum_probs=48.5
Q ss_pred CCcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCC
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDN 207 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 207 (290)
.....|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 346799999999988888899999999999999999999999999999887654
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.46 E-value=5.2e-14 Score=112.13 Aligned_cols=67 Identities=16% Similarity=0.416 Sum_probs=49.0
Q ss_pred chHHHHHhCC-ccccCCcccccccccccccCC---------------cceecCCCCcccHhhHHHHHh-----cCCCCCc
Q 039647 140 AQKEVVKALP-MVAIDQDLQCAVWLEEFVMGN---------------EAKQMPYKHKFHGECLMPWLE-----FHSSCPI 198 (290)
Q Consensus 140 a~~~~i~~lp-~~~~~~~~~C~ICle~f~~~~---------------~~~~lpC~H~FH~~CI~~Wl~-----~~~~CP~ 198 (290)
..++.|.++. .+....+..|+||++.|..+. .++.++|+|.||..||..||. .+.+||+
T Consensus 8 ~p~~~i~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~ 87 (114)
T 1v87_A 8 EPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87 (114)
T ss_dssp CHHHHHHHHEEECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTT
T ss_pred ChHHHHHHHHHhccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCC
Confidence 3445555432 233345679999999997643 234788999999999999994 5678999
Q ss_pred ccccCCCC
Q 039647 199 CRYQLPSD 206 (290)
Q Consensus 199 CR~~l~~~ 206 (290)
||..+...
T Consensus 88 CR~~~~~~ 95 (114)
T 1v87_A 88 CKTIYGEK 95 (114)
T ss_dssp TCCBSSSC
T ss_pred CCCccCCC
Confidence 99988654
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.43 E-value=8.4e-14 Score=96.72 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=43.6
Q ss_pred CcccccccccccccC-CcceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 155 QDLQCAVWLEEFVMG-NEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 155 ~~~~C~ICle~f~~~-~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
....|+||++.|..+ ..++.++|+|.||..||.+|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 357899999999654 35778899999999999999999999999998875
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=99.94 Aligned_cols=54 Identities=19% Similarity=0.423 Sum_probs=45.6
Q ss_pred ccCCcccccccccccccC----CcceecCCCCcccHhhHHHHHhcCCCCCcccccCCC
Q 039647 152 AIDQDLQCAVWLEEFVMG----NEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~----~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
.+.+...|+||++.|... ..++.++|+|.||..||..|++.+..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678999999999753 334788999999999999999999999999998754
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.41 E-value=9.5e-14 Score=101.20 Aligned_cols=55 Identities=18% Similarity=0.440 Sum_probs=47.1
Q ss_pred CCcccccccccccccC----CcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCCc
Q 039647 154 DQDLQCAVWLEEFVMG----NEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDNL 208 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~----~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~ 208 (290)
.+...|+||++.|... ..++.++|+|.||..||.+|++.+.+||+||..+...+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 4568999999999752 345788999999999999999999999999999876554
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7e-14 Score=105.83 Aligned_cols=52 Identities=19% Similarity=0.481 Sum_probs=42.2
Q ss_pred Cccccccccccccc-----------CCcceecC-CCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 155 QDLQCAVWLEEFVM-----------GNEAKQMP-YKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 155 ~~~~C~ICle~f~~-----------~~~~~~lp-C~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
++..|+||++.|.. ++.++.++ |+|.||..||.+||+.+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 35678888887753 45566776 999999999999999999999999987643
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.38 E-value=1.8e-13 Score=109.35 Aligned_cols=50 Identities=20% Similarity=0.356 Sum_probs=42.9
Q ss_pred CcccccccccccccCC---------------cceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 155 QDLQCAVWLEEFVMGN---------------EAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~---------------~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
++..|+||++.|...- .++.++|+|.||..||.+||+.+.+||+||.++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4689999999998541 2566889999999999999999999999999864
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.6e-13 Score=98.51 Aligned_cols=55 Identities=15% Similarity=0.413 Sum_probs=46.8
Q ss_pred ccCCcccccccccccccCCcceec-CCCCcccHhhHHHHHhcCCCCCcccccCCCCCcc
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEFHSSCPICRYQLPSDNLK 209 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~~ 209 (290)
.+.+...|+||++.|.. ++.+ +|+|.||..||..|++.+..||+||..+...+..
T Consensus 11 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 11 ELTPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred hcCCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 34557899999999875 4555 8999999999999999999999999998776554
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.37 E-value=1.9e-13 Score=97.35 Aligned_cols=54 Identities=19% Similarity=0.431 Sum_probs=46.1
Q ss_pred CcccccccccccccC----CcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCCc
Q 039647 155 QDLQCAVWLEEFVMG----NEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDNL 208 (290)
Q Consensus 155 ~~~~C~ICle~f~~~----~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~ 208 (290)
+...|+||++.|... ..++.++|+|.||..||.+|++.+.+||+||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 357899999999753 344788999999999999999999999999999877653
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.1e-13 Score=100.31 Aligned_cols=57 Identities=23% Similarity=0.433 Sum_probs=48.1
Q ss_pred cccCCcccccccccccccCCc-ceecCCCCcccHhhHHHHHhcC---CCCCcccccCCCCC
Q 039647 151 VAIDQDLQCAVWLEEFVMGNE-AKQMPYKHKFHGECLMPWLEFH---SSCPICRYQLPSDN 207 (290)
Q Consensus 151 ~~~~~~~~C~ICle~f~~~~~-~~~lpC~H~FH~~CI~~Wl~~~---~~CP~CR~~l~~~~ 207 (290)
..+.+...|+||++.|...+. ++.++|+|.||..||..|++.+ ..||+||..+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 445567899999999987654 7888999999999999999875 78999999876653
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3e-13 Score=98.65 Aligned_cols=53 Identities=26% Similarity=0.696 Sum_probs=46.2
Q ss_pred cCCcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCCcc
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDNLK 209 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~~ 209 (290)
+.+...|+||++.|.. +.++|+|.||..||..|++.+..||+||..+...+..
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 3456899999999875 7889999999999999999999999999998866543
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=96.39 Aligned_cols=54 Identities=22% Similarity=0.426 Sum_probs=45.0
Q ss_pred ccCCcccccccccccccCCcceecC-CCCcccHhhHHHHHhcC--CCCCcccccCCCCCc
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEFH--SSCPICRYQLPSDNL 208 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~~--~~CP~CR~~l~~~~~ 208 (290)
.+.+...|+||++.|.. ++.++ |+|.||..||..|++.+ ..||+||..+...+.
T Consensus 11 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 11 PIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CSCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred cCCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 44567899999999975 67799 99999999999999865 689999997655443
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=5.9e-13 Score=97.69 Aligned_cols=50 Identities=28% Similarity=0.517 Sum_probs=44.1
Q ss_pred CCcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
.+...|+||++.|.. ++.++|+|.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 346799999999865 67889999999999999999999999999988654
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.30 E-value=1.4e-12 Score=94.43 Aligned_cols=49 Identities=24% Similarity=0.634 Sum_probs=43.2
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
....|+||++.|.. .++.++|+|.||..||..|++.+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 46799999999864 35789999999999999999999999999998864
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=95.55 Aligned_cols=53 Identities=17% Similarity=0.459 Sum_probs=44.8
Q ss_pred ccCCcccccccccccccCCcceecCCCCcccHhhHHHHHh---cCCCCCcccccCCCCC
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLE---FHSSCPICRYQLPSDN 207 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~---~~~~CP~CR~~l~~~~ 207 (290)
.+.+...|+||++.|.. ++.++|+|.||..||..|++ ....||+||..+...+
T Consensus 16 ~~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred hCccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34567899999999875 67789999999999999996 4568999999887654
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2e-12 Score=93.41 Aligned_cols=52 Identities=19% Similarity=0.460 Sum_probs=43.8
Q ss_pred cCCcccccccccccccCCcceecCCCCcccHhhHHHHH-hcCCCCCcccccCCCCC
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWL-EFHSSCPICRYQLPSDN 207 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl-~~~~~CP~CR~~l~~~~ 207 (290)
+.+...|+||++.|.. ++.++|||.||..||..|+ .....||+||..+..++
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 3457899999999875 4568999999999999999 45678999999887653
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.8e-12 Score=97.38 Aligned_cols=52 Identities=21% Similarity=0.478 Sum_probs=44.1
Q ss_pred CcccccccccccccCCcceecCCC-----CcccHhhHHHHHhcC--CCCCcccccCCCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYK-----HKFHGECLMPWLEFH--SSCPICRYQLPSDN 207 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~-----H~FH~~CI~~Wl~~~--~~CP~CR~~l~~~~ 207 (290)
+...|.||+++|..++. ..+||+ |.||..||.+||..+ .+||+||+.+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 45799999999987665 468996 999999999999765 48999999987654
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=96.52 Aligned_cols=48 Identities=17% Similarity=0.386 Sum_probs=43.0
Q ss_pred CCcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
.....|+||++.|.. ++.++|+|.||..||..|++....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 346799999999965 667999999999999999999999999999886
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=3.2e-12 Score=95.05 Aligned_cols=52 Identities=17% Similarity=0.403 Sum_probs=45.3
Q ss_pred cCCcccccccccccccCCcceecCCCCcccHhhHHHHHhc-CCCCCcccccCCCCC
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF-HSSCPICRYQLPSDN 207 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~~ 207 (290)
+.+...|+||++.|.. ++.++|||.||..||..|++. +.+||+||..+...+
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 4567899999999975 677899999999999999986 789999999887654
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.26 E-value=5.6e-12 Score=94.29 Aligned_cols=53 Identities=26% Similarity=0.578 Sum_probs=45.4
Q ss_pred ccCCcccccccccccccCCcceecCCCCcccHhhHHHHHhc------CCCCCcccccCCCCC
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF------HSSCPICRYQLPSDN 207 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~------~~~CP~CR~~l~~~~ 207 (290)
.+.+...|+||++.|.. ++.++|+|.||..||..|++. ...||+||..+...+
T Consensus 15 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCCTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred hCccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 34567899999999875 568899999999999999987 678999999887654
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.25 E-value=2.1e-12 Score=106.75 Aligned_cols=49 Identities=33% Similarity=0.746 Sum_probs=43.6
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
++..|+||++.|.. ++.+||||.||..||..|+..+.+||+||..+...
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 35689999999975 67899999999999999999999999999988643
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=6.4e-12 Score=93.94 Aligned_cols=53 Identities=26% Similarity=0.604 Sum_probs=45.4
Q ss_pred ccCCcccccccccccccCCcceecCCCCcccHhhHHHHHhc------CCCCCcccccCCCCC
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF------HSSCPICRYQLPSDN 207 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~------~~~CP~CR~~l~~~~ 207 (290)
.+.+...|+||++.|.. ++.++|+|.||..||..|+.. ...||+||..+...+
T Consensus 15 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred HccCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 34567899999999875 567899999999999999987 779999999887644
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.22 E-value=2.2e-12 Score=95.78 Aligned_cols=53 Identities=19% Similarity=0.472 Sum_probs=45.1
Q ss_pred ccCCcccccccccccccCCcceecCCCCcccHhhHHHHHhc-------CCCCCcccccCCCCC
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF-------HSSCPICRYQLPSDN 207 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~-------~~~CP~CR~~l~~~~ 207 (290)
.+.+...|+||++.|.. ++.++|||.||..||..|++. ...||+||..+...+
T Consensus 8 ~~~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 8 NVQEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred hcccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 44567899999999975 567899999999999999976 668999999887643
No 29
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.22 E-value=1.1e-12 Score=106.64 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=0.9
Q ss_pred CcccccccccccccC-------------C--cceecCCCCcccHhhHHHHHhcCCCCCcccccCCC
Q 039647 155 QDLQCAVWLEEFVMG-------------N--EAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 155 ~~~~C~ICle~f~~~-------------~--~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
+++.|+||++.|... + .+..++|+|.||..||.+||+.+.+||+||.++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 358999999999752 2 23345899999999999999999999999998643
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.22 E-value=2.3e-12 Score=100.98 Aligned_cols=51 Identities=22% Similarity=0.460 Sum_probs=43.8
Q ss_pred CCcccccccccccccCCccee-cCCCCcccHhhHHHHHhcC-CCCCcccccCCCCC
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQ-MPYKHKFHGECLMPWLEFH-SSCPICRYQLPSDN 207 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~-lpC~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~~~ 207 (290)
.+...|+||++.|.. ++. ++|||.||..||..|++.+ ..||+||..+...+
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 456899999999975 566 8999999999999999877 69999999986543
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.5e-12 Score=89.13 Aligned_cols=45 Identities=20% Similarity=0.512 Sum_probs=38.9
Q ss_pred ccCCcccccccccccccCCcceecCCCCcccHhhHHHHHh---cCCCCCcc
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLE---FHSSCPIC 199 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~---~~~~CP~C 199 (290)
.+.+...|+||++.|.. ++.++|||.||..||..|++ ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567899999999975 67789999999999999998 45689998
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.17 E-value=8.7e-12 Score=100.49 Aligned_cols=56 Identities=18% Similarity=0.435 Sum_probs=47.6
Q ss_pred CCcccccccccccccC----CcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCCcc
Q 039647 154 DQDLQCAVWLEEFVMG----NEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDNLK 209 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~----~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~~ 209 (290)
.+...|+||++.|... ..++.++|||.||..||.+||+.+.+||+||..+......
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccc
Confidence 3468999999999753 3448899999999999999999999999999999776543
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=93.83 Aligned_cols=50 Identities=22% Similarity=0.443 Sum_probs=42.8
Q ss_pred ccCCcccccccccccccCCcceecC-CCCcccHhhHHHHHhcC--CCCCcccccCC
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEFH--SSCPICRYQLP 204 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~~--~~CP~CR~~l~ 204 (290)
.+.+...|+||++.|.. ++.++ |||.||..||..|+... ..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34567899999999975 77899 99999999999999754 58999999874
No 34
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.8e-11 Score=91.80 Aligned_cols=52 Identities=17% Similarity=0.392 Sum_probs=43.3
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcC--CCCCcccccCCCCCcc
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFH--SSCPICRYQLPSDNLK 209 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~--~~CP~CR~~l~~~~~~ 209 (290)
...|+||++.|..+.+ ...|+|.||..||.+||+.+ .+||+||.++..+...
T Consensus 15 i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 15 VKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred CCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 4799999999987643 33799999999999999877 8999999988755443
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=85.72 Aligned_cols=45 Identities=27% Similarity=0.657 Sum_probs=37.9
Q ss_pred ccCCcccccccccccccCCcceecCCCCcccHhhHHHHHh---cCCCCCcc
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLE---FHSSCPIC 199 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~---~~~~CP~C 199 (290)
.+.+...|+||++.|.. ++.++|+|.||..||..|+. .+..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999976 56789999999999999954 56789998
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.16 E-value=1.3e-11 Score=97.50 Aligned_cols=51 Identities=27% Similarity=0.598 Sum_probs=44.5
Q ss_pred cCCcccccccccccccCCcceec-CCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
+.+...|+||++.|.. ++.+ +|||.||..||..|+..+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3457899999999975 5565 9999999999999999999999999988764
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.14 E-value=1.9e-11 Score=95.07 Aligned_cols=49 Identities=22% Similarity=0.621 Sum_probs=42.8
Q ss_pred CcccccccccccccCCcceec-CCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
+...|+||++.|.. ++.+ +|||.||..||..|+..+..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 45799999999975 5555 8999999999999999989999999988653
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.13 E-value=2.3e-11 Score=98.46 Aligned_cols=48 Identities=27% Similarity=0.515 Sum_probs=42.1
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhcCC-CCCcccccCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHS-SCPICRYQLPS 205 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~ 205 (290)
+...|+||++.|.. ++.++|||.||..||..|+..+. .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45799999999985 67889999999999999998544 89999998865
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=4.3e-11 Score=94.43 Aligned_cols=51 Identities=24% Similarity=0.548 Sum_probs=43.0
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhcCC---CCCcccccCCCCCc
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHS---SCPICRYQLPSDNL 208 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~---~CP~CR~~l~~~~~ 208 (290)
+...|+||++.|.. ++.++|||.||..||..|+..+. .||+||..+...+.
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 35799999999875 56789999999999999998654 89999998876543
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=4.1e-11 Score=86.16 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=42.8
Q ss_pred Cccccccccc-ccccCCcc-eecCCCCcccHhhHHHHHhc-CCCCCcccccCCCCCc
Q 039647 155 QDLQCAVWLE-EFVMGNEA-KQMPYKHKFHGECLMPWLEF-HSSCPICRYQLPSDNL 208 (290)
Q Consensus 155 ~~~~C~ICle-~f~~~~~~-~~lpC~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~~~ 208 (290)
++..|+||++ .|...... ..++|||.||..||..|+.. ...||+||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3578999999 77654322 45789999999999999864 4679999999876554
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.09 E-value=3.2e-11 Score=97.16 Aligned_cols=53 Identities=19% Similarity=0.453 Sum_probs=45.6
Q ss_pred CcccccccccccccC----CcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCC
Q 039647 155 QDLQCAVWLEEFVMG----NEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDN 207 (290)
Q Consensus 155 ~~~~C~ICle~f~~~----~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 207 (290)
+...|+||++.|... ..++.++|+|.||..||.+||+.+.+||+||..+..++
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 468999999999752 33478899999999999999999999999999987654
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.08 E-value=2.5e-11 Score=102.80 Aligned_cols=48 Identities=27% Similarity=0.629 Sum_probs=41.4
Q ss_pred CcccccccccccccCCcceec-CCCCcccHhhHHHHHhc-CCCCCcccccCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEF-HSSCPICRYQLPS 205 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 205 (290)
+...|+||++.|.. ++.+ +|||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45799999999985 4555 99999999999999986 7789999998854
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.05 E-value=5.1e-11 Score=95.78 Aligned_cols=51 Identities=22% Similarity=0.484 Sum_probs=43.7
Q ss_pred cCCcccccccccccccCCcceecCCCCcccHhhHHHHHhcCC-CCCcccccCCCC
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHS-SCPICRYQLPSD 206 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~~ 206 (290)
+.+...|+||++.|.. ++.++|||.||..||..|++... .||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4456899999999975 57789999999999999997655 999999988654
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.05 E-value=8.6e-11 Score=98.86 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=43.0
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhcCC-CCCcccccCCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHS-SCPICRYQLPSD 206 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~~ 206 (290)
+...|+||++.|.. ++.++|+|.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45799999999975 67799999999999999998654 899999998765
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.05 E-value=2e-11 Score=97.55 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=43.4
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhc-CCCCCcccccCCCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF-HSSCPICRYQLPSDN 207 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~~ 207 (290)
+...|+||++.|.. ++.++|||.||..||..|+.. ...||+||..+...+
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 46799999999975 667899999999999999986 778999999887644
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.04 E-value=9.3e-11 Score=89.49 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=45.9
Q ss_pred cCCcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCC
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDN 207 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 207 (290)
+.+...|+||++.|.+ ++.++|||.|+..||..||..+.+||+|+..+...+
T Consensus 11 ~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CchheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 3457899999999986 788999999999999999998899999999886543
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.03 E-value=1.8e-11 Score=97.65 Aligned_cols=49 Identities=27% Similarity=0.582 Sum_probs=42.4
Q ss_pred CCcccccccccccccCCcceecCCCCcccHhhHHHHHhc-CCCCCcccccCCC
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF-HSSCPICRYQLPS 205 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~ 205 (290)
.++..|+||++.|.. ++.++|||.||..||..|+.. +..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 346899999999875 778899999999999999965 6789999998864
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.02 E-value=1.5e-10 Score=91.15 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=46.6
Q ss_pred cCCcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCCc
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDNL 208 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~ 208 (290)
+.+...|+||++.|.+ ++.++|||.|+..||..||..+.+||+|+..+...+.
T Consensus 26 ~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML 78 (100)
T ss_dssp CSTTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred CcHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence 3456899999999986 7889999999999999999988999999998876543
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.02 E-value=9.6e-11 Score=112.55 Aligned_cols=49 Identities=27% Similarity=0.518 Sum_probs=42.9
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHh-cCCCCCcccccCCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLE-FHSSCPICRYQLPSDN 207 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~-~~~~CP~CR~~l~~~~ 207 (290)
...|+||++.+.. ++.+||||.||..||..|+. .+..||+||..+....
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3699999999864 78899999999999999998 6889999999886543
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=3.2e-10 Score=85.45 Aligned_cols=57 Identities=19% Similarity=0.412 Sum_probs=44.7
Q ss_pred ccCCcccccccccccccCCcceecC--CCCcccHhhHHHHHh-cCCCCCcccccCCCCCcc
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMP--YKHKFHGECLMPWLE-FHSSCPICRYQLPSDNLK 209 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lp--C~H~FH~~CI~~Wl~-~~~~CP~CR~~l~~~~~~ 209 (290)
.+.++..|+||++.|...+ ++.+| |||.||..||..|++ ....||+||+.+......
T Consensus 7 ~~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 3456789999999986533 34444 999999999999985 456899999998876554
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.01 E-value=1.7e-10 Score=90.54 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=46.7
Q ss_pred cCCcccccccccccccCCcceecCCC-CcccHhhHHHHHhcCCCCCcccccCCCCCc
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMPYK-HKFHGECLMPWLEFHSSCPICRYQLPSDNL 208 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lpC~-H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~ 208 (290)
+.+...|+||++.|++ ++.++|| |.|++.||..||..+.+||+|+..+...+.
T Consensus 19 ~p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CCTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred CcHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 3457899999999986 7889999 999999999999888899999999876543
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.95 E-value=1.7e-10 Score=96.14 Aligned_cols=52 Identities=15% Similarity=0.292 Sum_probs=43.7
Q ss_pred ccCCcccccccccccccCCcceecCCCCcccHhhHHHHHhcCC-CCCcccccCCCC
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHS-SCPICRYQLPSD 206 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~-~CP~CR~~l~~~ 206 (290)
.+.+...|+||++.|.. ++.++|||.||..||..|++... .||+||.++...
T Consensus 27 ~l~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp GCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cCCcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 34567899999999976 57789999999999999998664 899999987544
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=1.5e-10 Score=92.79 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=41.0
Q ss_pred CcccccccccccccCCcceec-CCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
+...|+||++.|.. ++.+ +|||.||..||..|+. ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 46899999999975 6677 8999999999999998 7899999988543
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=4.3e-10 Score=78.99 Aligned_cols=47 Identities=30% Similarity=0.511 Sum_probs=40.0
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDN 207 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 207 (290)
+...|+||++.|.. ++.|+|+|.||..||..| ...||+||..+....
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 45789999999985 678999999999999884 668999999887543
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.88 E-value=6.8e-10 Score=80.26 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=40.5
Q ss_pred CcccccccccccccCCcceec--CCCCc-ccHhhHHHHHhcCCCCCcccccCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQM--PYKHK-FHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~l--pC~H~-FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
++..|.||++.+.. +..+ ||||. |+..|+..|++.+..||+||..+.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45799999998764 4444 99999 899999999998899999999874
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=6.3e-10 Score=100.10 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=44.5
Q ss_pred ccCCcccccccccccccCCcceecCCCCcccHhhHHHHHhc-CCCCCcccccCCCCC
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF-HSSCPICRYQLPSDN 207 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~-~~~CP~CR~~l~~~~ 207 (290)
.+.....|+||++.|.+ ++++||||.||..||..||.. +.+||+||.++...+
T Consensus 204 ~~~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCCSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCCcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 34456899999999986 788999999999999999976 445999999886543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.83 E-value=4.4e-10 Score=83.34 Aligned_cols=44 Identities=16% Similarity=0.434 Sum_probs=38.8
Q ss_pred CcccccccccccccCCcceecCCCCc-ccHhhHHHHHhcCCCCCcccccCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHK-FHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
+...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45799999999865 778899999 999999999 889999998764
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.1e-09 Score=84.84 Aligned_cols=51 Identities=16% Similarity=0.422 Sum_probs=41.7
Q ss_pred CCcccccccccccccCCcceecC-CCCcccHhhHHHHHhcC------CCCCc--cccc-CCCCC
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEFH------SSCPI--CRYQ-LPSDN 207 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~~------~~CP~--CR~~-l~~~~ 207 (290)
.+...|+||++.|.+ ++.++ |||.|++.||..||..+ .+||+ |+.. +...+
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 346899999999986 77886 99999999999999754 48999 9866 54433
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.77 E-value=2.6e-09 Score=76.94 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=39.3
Q ss_pred cccccccccccccCCcceec--CCCCc-ccHhhHHHHHhcCCCCCcccccCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQM--PYKHK-FHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~l--pC~H~-FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
...|.||++.+.. +..+ ||||. ||..|+..|++....||+||..+.
T Consensus 7 ~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4689999998654 3444 99998 999999999988889999999874
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.77 E-value=2.6e-09 Score=90.67 Aligned_cols=51 Identities=22% Similarity=0.481 Sum_probs=43.5
Q ss_pred cCCcccccccccccccCCcceecCCCCcccHhhHHHHHhcC-CCCCcccccCCCC
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFH-SSCPICRYQLPSD 206 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~~ 206 (290)
+.+...|+||++.|.. ++.++|||.||..||..|+... ..||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4457899999999976 5778999999999999999754 4999999988654
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.69 E-value=8.8e-09 Score=89.28 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=44.8
Q ss_pred ccCCcccccccccccccCCcceecCCCCcccHhhHHHHHhcC-CCCCcccccCCCCC
Q 039647 152 AIDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFH-SSCPICRYQLPSDN 207 (290)
Q Consensus 152 ~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~-~~CP~CR~~l~~~~ 207 (290)
.+.+...|+||++.|.+ ++.+||||.|+..||..||..+ .+||+|+..+...+
T Consensus 102 ~ip~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 102 EIPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCcHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 34457899999999986 7888999999999999999764 47999999886543
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=75.67 Aligned_cols=45 Identities=16% Similarity=0.426 Sum_probs=37.8
Q ss_pred cccccccccccccCCcceecCCCCc-ccHhhHHHHHhcCCCCCcccccCCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHK-FHGECLMPWLEFHSSCPICRYQLPSDN 207 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 207 (290)
...|+||++.+.. ++.+||+|. ||..|+.. ...||+||..+....
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence 4689999999865 778999999 99999964 478999999886643
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.62 E-value=7.2e-09 Score=97.90 Aligned_cols=51 Identities=25% Similarity=0.641 Sum_probs=39.4
Q ss_pred CcccccccccccccCCcc-----eecCCCCcccHhhHHHHHhcC-----------CCCCcccccCCC
Q 039647 155 QDLQCAVWLEEFVMGNEA-----KQMPYKHKFHGECLMPWLEFH-----------SSCPICRYQLPS 205 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~-----~~lpC~H~FH~~CI~~Wl~~~-----------~~CP~CR~~l~~ 205 (290)
...+|+||++.+..+..+ ...+|+|.||..||.+||+.. ..||.||.++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 346999999999873322 123699999999999999742 469999998754
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.59 E-value=3.6e-08 Score=70.61 Aligned_cols=48 Identities=29% Similarity=0.605 Sum_probs=37.5
Q ss_pred CcccccccccccccCCcceecCCC--C---cccHhhHHHHHhc--CCCCCcccccCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYK--H---KFHGECLMPWLEF--HSSCPICRYQLPS 205 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~--H---~FH~~CI~~Wl~~--~~~CP~CR~~l~~ 205 (290)
+...|.||+++. ++. ..+||. | .||..||.+|+.. +.+||+|++.+..
T Consensus 5 ~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 457999999973 333 468854 4 9999999999964 6789999998753
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.6e-08 Score=71.54 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=39.2
Q ss_pred CcccccccccccccCCcceecCCCCc-ccHhhHHHHHhcCCCCCcccccCCCCCc
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHK-FHGECLMPWLEFHSSCPICRYQLPSDNL 208 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~~~~ 208 (290)
+...|.||++.+.. ++.+||+|. ||..|+.. ...||+||..+.....
T Consensus 14 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhceEE
Confidence 45799999998754 788999999 99999984 5789999998876433
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=3.5e-08 Score=75.92 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=38.0
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhc--------CCCCCc--cccc
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF--------HSSCPI--CRYQ 202 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~--------~~~CP~--CR~~ 202 (290)
+..+|+||+++|...+.....+|+|.||..||..|++. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35789999999876543333479999999999999963 136999 9987
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.50 E-value=3.7e-08 Score=70.69 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=44.4
Q ss_pred ccccccccccccCCcceec-CCCCcccHhhHHHHHhcCCCCCcccccCCCCCccc
Q 039647 157 LQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEFHSSCPICRYQLPSDNLKV 210 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~~~ 210 (290)
..|+||++.+.+ ++.+ +|||.|.+.||.+||+.+.+||+++.++...+...
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 579999999985 6677 89999999999999988888999999987766543
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.48 E-value=1.6e-08 Score=95.90 Aligned_cols=45 Identities=27% Similarity=0.552 Sum_probs=39.4
Q ss_pred CCcccccccccccccCCcceecCCCCc-ccHhhHHHHHhcCCCCCcccccCCC
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQMPYKHK-FHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
.+...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 356899999999875 788899999 999999988 789999998754
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.47 E-value=3e-08 Score=74.55 Aligned_cols=45 Identities=27% Similarity=0.533 Sum_probs=38.5
Q ss_pred cccccccccccccCCcceecCCCCc-ccHhhHHHHHhcCCCCCcccccCCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHK-FHGECLMPWLEFHSSCPICRYQLPSDN 207 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 207 (290)
...|.||++.+.. ++.+||||. ||..|+..| ..||+||..+....
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeE
Confidence 5689999998765 788999999 999999887 48999999887643
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.39 E-value=7.6e-08 Score=87.91 Aligned_cols=52 Identities=15% Similarity=0.369 Sum_probs=41.8
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhcC--CCCCc--ccccCCCCCc
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFH--SSCPI--CRYQLPSDNL 208 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~--~~CP~--CR~~l~~~~~ 208 (290)
....|+||++.|.. .++.+.|||.|++.||..|++.+ ..||+ |+..+...+.
T Consensus 180 ~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred eeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 45899999999975 23345899999999999999764 47999 9998765543
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.08 E-value=3.5e-06 Score=75.92 Aligned_cols=50 Identities=16% Similarity=0.410 Sum_probs=41.1
Q ss_pred cccccccccccccCCcceecC-CCCcccHhhHHHHHhcCC--CCCcccccCCCCCc
Q 039647 156 DLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEFHS--SCPICRYQLPSDNL 208 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~~~--~CP~CR~~l~~~~~ 208 (290)
-..|.||.+.+..|. ..+ |+|.||..|+..|++.+. .||.|+..++...+
T Consensus 180 i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 469999999988753 333 999999999999997654 89999998776644
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.96 E-value=3.9e-06 Score=65.84 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=38.7
Q ss_pred cccccccccccCCcceecCCCCcccHhhHHHHHh-cCCCCCcccccCCCC
Q 039647 158 QCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLE-FHSSCPICRYQLPSD 206 (290)
Q Consensus 158 ~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~-~~~~CP~CR~~l~~~ 206 (290)
-|.+|--.+.. ..+.+||+|+||.+|+..|.+ ..++||.|+.++..-
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 47888777654 578899999999999999995 568999999887543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.56 E-value=0.0074 Score=46.68 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=45.4
Q ss_pred CCccccCCcccccccccccccCCcceecCC-CCcccHhhHHHHHhcCCCCCcccccCCCCCcc
Q 039647 148 LPMVAIDQDLQCAVWLEEFVMGNEAKQMPY-KHKFHGECLMPWLEFHSSCPICRYQLPSDNLK 209 (290)
Q Consensus 148 lp~~~~~~~~~C~ICle~f~~~~~~~~lpC-~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~~ 209 (290)
++...+-+-.-|..|+-..+. .+.| .|.+|..|+.-.|.....||+|+++|+.+-..
T Consensus 20 ~~d~s~~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 20 IPDATHLGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SSSCCCSCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cCCccccCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 455555667899999976542 3345 59999999999999999999999999987554
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.74 E-value=0.011 Score=45.11 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=26.6
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHH
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWL 190 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl 190 (290)
++..|.||++.|........+.|+|.||..|+..|.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 357899999875433223338899999999999843
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.43 E-value=0.067 Score=40.55 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=25.4
Q ss_pred cccCCcccccccccccccCCcceecCCCCcccHhhHHHH
Q 039647 151 VAIDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPW 189 (290)
Q Consensus 151 ~~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~W 189 (290)
..+..+..|.||.-. ..++....=-|+-+||..|+.+-
T Consensus 10 e~~~~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccccc-cccceeccccccccccHhhcccc
Confidence 344568899999743 33222111128999999999996
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.30 E-value=0.088 Score=37.86 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=31.6
Q ss_pred cccccccccccccCCcceecC-CCCcccHhhHHHHHhcC----CCCCccccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEFH----SSCPICRYQ 202 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~~----~~CP~CR~~ 202 (290)
...|.||.+. ++ ++..- |...||..|+.+.|... =.||.|+..
T Consensus 12 ~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4689999853 33 44443 99999999999988643 269999654
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.72 E-value=0.25 Score=34.73 Aligned_cols=45 Identities=29% Similarity=0.499 Sum_probs=31.6
Q ss_pred CCcccccccccccccCCcceec-CCCCcccHhhHHHHHhc----CCCCCccccc
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEF----HSSCPICRYQ 202 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~----~~~CP~CR~~ 202 (290)
..+..|.||.+. ++ +... .|...||..|+.+-+.. .-.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 346799999973 33 3333 49999999999986532 2369999653
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.05 E-value=0.11 Score=36.68 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=33.2
Q ss_pred CcccccccccccccCCcceecC-CCCcccHhhHHHHHh-----cCCCCCcccc
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLE-----FHSSCPICRY 201 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~-----~~~~CP~CR~ 201 (290)
+...|+||...+..+...+..- |..-||..|+.--.. ..-.||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 4578999999886544444444 999999999864332 2457999965
No 79
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.35 E-value=0.36 Score=36.76 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=32.3
Q ss_pred CCcccccccccccccCCcceecC-CCCcccHhhHHHHHhcC----CCCCccccc
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEFH----SSCPICRYQ 202 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~~----~~CP~CR~~ 202 (290)
..+..|.||.+. ++ +.... |.-.||..|+.+=|... -.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 346899999964 33 33443 99999999998866432 269999764
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.08 E-value=0.3 Score=34.30 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=30.6
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhc----CCCCCccccc
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF----HSSCPICRYQ 202 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~----~~~CP~CR~~ 202 (290)
.+..|.||.+. ++-+.--.|...||..|+.+-|.. .=.||.|+..
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45789999863 332222239999999999875543 2259999754
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.49 E-value=0.57 Score=49.57 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=43.5
Q ss_pred cccccccccccccCCcceecCCC-CcccHhhHHHHHhcCCCCCcccccCCCCCc
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYK-HKFHGECLMPWLEFHSSCPICRYQLPSDNL 208 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~-H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~~ 208 (290)
...|+|-++.+.+ ++.+|-| +.|-+.+|..||..+.+||+=|.++...+.
T Consensus 891 ~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 891 EFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp GGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred HhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 4689999999986 8899987 589999999999989999999998875543
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.23 E-value=0.36 Score=32.32 Aligned_cols=43 Identities=26% Similarity=0.374 Sum_probs=28.4
Q ss_pred cccccccccccCCcceec-CCCCcccHhhHHHHHhc----CCCCCcccc
Q 039647 158 QCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEF----HSSCPICRY 201 (290)
Q Consensus 158 ~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~----~~~CP~CR~ 201 (290)
.|.||...-.. +.++.. .|...||..|+.+=|.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58999875332 233333 39999999999865532 225998864
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.44 E-value=1.2 Score=32.59 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=31.1
Q ss_pred ccccccccccccCCcceecC-CCCcccHhhHHHHHh-----cCCCCCcccccC
Q 039647 157 LQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLE-----FHSSCPICRYQL 203 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~-----~~~~CP~CR~~l 203 (290)
.-| ||...+..+...+..- |..-||..|+.--.. ..-.||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 455 9998875444444444 999999999863221 345799997654
No 84
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=82.36 E-value=1.1 Score=42.42 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=48.0
Q ss_pred ccHHHHHHHHHhcCCCCCCCCcchHHHHHh-CC---cccc-----CCcccccccccccccCCcceecCCCCcccHh--hH
Q 039647 118 PGLDLLLQHLLENDPNRYGSLSAQKEVVKA-LP---MVAI-----DQDLQCAVWLEEFVMGNEAKQMPYKHKFHGE--CL 186 (290)
Q Consensus 118 ~~l~~ll~~l~~~~~~~~~~~pa~~~~i~~-lp---~~~~-----~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~--CI 186 (290)
...++|+++|..+.. .....+.+.|+. +. ...+ .-.+.|++-+..+.. .++...|.|.-|.+ =+
T Consensus 205 ~s~e~Ll~~I~~~~~---i~~e~tl~~Ik~~ls~d~DdDIv~~s~~vSL~CPlS~~ri~~--PvRg~~C~HlQCFDl~sf 279 (371)
T 3i2d_A 205 ITPEQLLEKVLQHPK---IIKQATLLYLKKTLREDEEMGLTTTSTIMSLQCPISYTRMKY--PSKSINCKHLQCFDALWF 279 (371)
T ss_dssp CCHHHHHHHHHTSCC---BCHHHHHHHHHHHHHSCC------CEEEEESBCTTTSSBCSS--EEEETTCCSSCCEEHHHH
T ss_pred cCHHHHHHHHHhcCC---CCHHHHHHHHHHHhccCCCCceeeeeeEEeecCCCccccccc--cCcCCcCCCcceECHHHH
Confidence 489999999875321 112222233322 11 1111 114799998888765 46777899994443 34
Q ss_pred HHHHhc--CCCCCcccccCCCCC
Q 039647 187 MPWLEF--HSSCPICRYQLPSDN 207 (290)
Q Consensus 187 ~~Wl~~--~~~CP~CR~~l~~~~ 207 (290)
....++ .-.||+|.+.+...+
T Consensus 280 L~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 280 LHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp HHHHHHSCCCBCTTTCCBCCGGG
T ss_pred HHHhhcCCceeCCCCCcccCHHH
Confidence 333333 336999998775544
No 85
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=80.19 E-value=0.55 Score=40.26 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=34.7
Q ss_pred ccccccccccccCCc---ceecC-CCCcccHhhHHH------HHh-----cCCCCCcccccCC
Q 039647 157 LQCAVWLEEFVMGNE---AKQMP-YKHKFHGECLMP------WLE-----FHSSCPICRYQLP 204 (290)
Q Consensus 157 ~~C~ICle~f~~~~~---~~~lp-C~H~FH~~CI~~------Wl~-----~~~~CP~CR~~l~ 204 (290)
..|+||...|..++. .+..- |..-||..|+.- -+. ..-.||.|+..-+
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 469999999987763 44554 999999999853 111 1568999987543
No 86
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=79.75 E-value=1.6 Score=41.33 Aligned_cols=86 Identities=19% Similarity=0.303 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHhcCCCCCCCCcchHHHHHh-CC---ccccC-----CcccccccccccccCCcceecCCCCc--ccHhhH
Q 039647 118 PGLDLLLQHLLENDPNRYGSLSAQKEVVKA-LP---MVAID-----QDLQCAVWLEEFVMGNEAKQMPYKHK--FHGECL 186 (290)
Q Consensus 118 ~~l~~ll~~l~~~~~~~~~~~pa~~~~i~~-lp---~~~~~-----~~~~C~ICle~f~~~~~~~~lpC~H~--FH~~CI 186 (290)
...++|+++|... +...+..+++.|+. +. ...+. -.+.|+|-+..++. .++...|.|. |-..=+
T Consensus 171 ~s~~~Llq~l~~k---~~~~~e~t~~~Ik~~l~~d~DddI~~~~~~vSL~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sf 245 (360)
T 4fo9_A 171 LTSAMLLQRLKMK---GIRNPDHSRALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLTI--PCRAVTCTHLQCFDAALY 245 (360)
T ss_dssp CCHHHHHHHHHTC----CBCHHHHHHHHHHHHC---------CCEEEESBCTTTCSBCSS--EEEETTCCCCCCEEHHHH
T ss_pred CCHHHHHHHHHhc---CCCCHHHHHHHHHHHhccCCccceeeeeeEEeeeCCCccceecc--CCcCCCCCCCccCCHHHH
Confidence 4789999998742 12122223334432 21 11111 14789998888765 4677789999 544444
Q ss_pred HHHHhcC--CCCCcccccCCCCCc
Q 039647 187 MPWLEFH--SSCPICRYQLPSDNL 208 (290)
Q Consensus 187 ~~Wl~~~--~~CP~CR~~l~~~~~ 208 (290)
....++. -.||+|.+.+..++.
T Consensus 246 L~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 246 LQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp HHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred HHHHhhCCCeECCCCCcccCHHHe
Confidence 4444333 369999988875543
No 87
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=78.98 E-value=0.46 Score=35.86 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=37.1
Q ss_pred ccccCCccccccccccc-ccCCcceecC-CCCcccHhhHHHHHh--cCCCCCcccccCCCCC
Q 039647 150 MVAIDQDLQCAVWLEEF-VMGNEAKQMP-YKHKFHGECLMPWLE--FHSSCPICRYQLPSDN 207 (290)
Q Consensus 150 ~~~~~~~~~C~ICle~f-~~~~~~~~lp-C~H~FH~~CI~~Wl~--~~~~CP~CR~~l~~~~ 207 (290)
...+.++..|.||.+.- ...+.++... |.-.||..|+.+-+. ..=.||.|........
T Consensus 19 ~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 19 QSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp TCCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 33455678999999753 1222344444 899999999986432 2336999976554443
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.65 E-value=0.5 Score=34.19 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=33.4
Q ss_pred cccccccccccccCCcceecC-CCCcccHhhHHHHHhc----CCCCCcccccCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEF----HSSCPICRYQLP 204 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~----~~~CP~CR~~l~ 204 (290)
...|.||..... ++..+..- |..-||..|+..-+.. .-.||.|+..+.
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 357999988753 33344443 9999999999865532 346999977654
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.30 E-value=0.36 Score=41.76 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=31.8
Q ss_pred cccccccccccccCCcceecC-CCCcccHhhHHHHHhcC----CCCCcccccC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEFH----SSCPICRYQL 203 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~~----~~CP~CR~~l 203 (290)
+..|.||... | .+.... |...||..|+.+.|... -.||.|+..-
T Consensus 7 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 5789999853 3 344444 99999999998877532 3699997643
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=78.07 E-value=0.48 Score=40.07 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=32.3
Q ss_pred CcccccccccccccCCcceecC-CCCcccHhhHHHHHhc----CCCCCcccccC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEF----HSSCPICRYQL 203 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~----~~~CP~CR~~l 203 (290)
.+..|.||.+. |+ +.... |...||..|+.+-|.. .-.||.|+...
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35689999854 33 44444 9999999999887753 23699998644
No 91
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.98 E-value=0.19 Score=34.64 Aligned_cols=43 Identities=26% Similarity=0.461 Sum_probs=29.4
Q ss_pred CcccccccccccccCCcceec-CCCCcccHhhHHHHHhcC----CCCCcccc
Q 039647 155 QDLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEFH----SSCPICRY 201 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~~----~~CP~CR~ 201 (290)
.+..|.||.+. ++ ++.. .|...||..|+.+-|... -.||.|..
T Consensus 8 ~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 46789999974 33 3333 499999999998755322 24887753
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=76.28 E-value=0.55 Score=36.51 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=30.0
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhc----CCCCCccc
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF----HSSCPICR 200 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~----~~~CP~CR 200 (290)
++..|.||.+.=+..+.+.--.|...||..|+...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46899999876322221333349999999999887642 22466664
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=74.62 E-value=0.55 Score=33.36 Aligned_cols=43 Identities=28% Similarity=0.429 Sum_probs=30.6
Q ss_pred CcccccccccccccCCcceec-CCCCcccHhhHHHHHhc----CCCCCcccc
Q 039647 155 QDLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEF----HSSCPICRY 201 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~----~~~CP~CR~ 201 (290)
.+..|.||.+. ++ ++.. .|...||..|+.+-|.. .-.||.|..
T Consensus 7 ~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 46799999964 33 3444 39999999999875543 225999965
No 94
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.69 E-value=0.5 Score=35.64 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=35.2
Q ss_pred ccccccccccccc-CCcceecC-CCCcccHhhHHHHHhc--------CCCCCcccccCCCCC
Q 039647 156 DLQCAVWLEEFVM-GNEAKQMP-YKHKFHGECLMPWLEF--------HSSCPICRYQLPSDN 207 (290)
Q Consensus 156 ~~~C~ICle~f~~-~~~~~~lp-C~H~FH~~CI~~Wl~~--------~~~CP~CR~~l~~~~ 207 (290)
+..|.||...-.. +..++..- |...||..|+.+-|.. .=.|+.|+.......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 5789999976322 23344444 9999999999986531 236999977655443
No 95
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=72.97 E-value=0.2 Score=34.97 Aligned_cols=45 Identities=27% Similarity=0.487 Sum_probs=31.1
Q ss_pred CcccccccccccccCCcceec-CCCCcccHhhHHHHHhc----CCCCCcccccC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEF----HSSCPICRYQL 203 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~----~~~CP~CR~~l 203 (290)
.+..|.||... ++ ++.. .|...||..|+.+-|.. .-.||.|....
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 35789999974 33 3333 49999999999875542 22599996644
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.91 E-value=0.83 Score=35.73 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=29.5
Q ss_pred ccccccccccccCCcceecC-CCCcccHhhHHHHHhc----CCCCCcccc
Q 039647 157 LQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEF----HSSCPICRY 201 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~----~~~CP~CR~ 201 (290)
..|.||.+.-...+.+...- |...||..|+.+-|.. .=.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 47889986422223333333 9999999999876643 226998864
No 97
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=71.25 E-value=1.2 Score=30.05 Aligned_cols=43 Identities=14% Similarity=0.034 Sum_probs=29.5
Q ss_pred cccccccccccCCcceec--CCCCcccHhhHHHHH----hcCCCCCccc
Q 039647 158 QCAVWLEEFVMGNEAKQM--PYKHKFHGECLMPWL----EFHSSCPICR 200 (290)
Q Consensus 158 ~C~ICle~f~~~~~~~~l--pC~H~FH~~CI~~Wl----~~~~~CP~CR 200 (290)
.|.||...+..+...+.. .|..-||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 688999988655544443 388899999976322 3566799885
No 98
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.56 E-value=3.2 Score=35.92 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=25.8
Q ss_pred CcccccccccccccCCcceecC-CCCcccHhhHHH
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMP 188 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~ 188 (290)
++..|.+|...|..-..-.... ||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4579999999998654434444 999999999554
No 99
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=68.79 E-value=2.7 Score=30.98 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=25.8
Q ss_pred CCcccccccccccccCCcceecC-CCCcccHhhHHH
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMP 188 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~ 188 (290)
.+...|.+|...|..-..-.... ||++||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34568999999998644333444 999999999654
No 100
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=68.53 E-value=1.2 Score=34.11 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=29.0
Q ss_pred ccccccccccccCCcceecCCCCcccHhhHHHHHhc---CCCCCcccc
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF---HSSCPICRY 201 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~---~~~CP~CR~ 201 (290)
..| ||......+.-+..=.|.-.||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 456 89877655443333349999999998763322 237999964
No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=68.04 E-value=1.1 Score=38.22 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=30.9
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhc----CCCCCccccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEF----HSSCPICRYQ 202 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~----~~~CP~CR~~ 202 (290)
+..|.||.+. |+.+..-.|...||..|+.+=|.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999954 443333349999999999875542 2269999765
No 102
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=67.89 E-value=2.9 Score=29.65 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=24.8
Q ss_pred cccccccccccccCCcceec--CCCCcccHhhHH
Q 039647 156 DLQCAVWLEEFVMGNEAKQM--PYKHKFHGECLM 187 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~l--pC~H~FH~~CI~ 187 (290)
...|.+|...+..+...+.. .|.--||..|+.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 46899999998766555544 599999999975
No 103
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=67.79 E-value=1.1 Score=37.39 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=32.0
Q ss_pred CcccccccccccccCCcceecC-CCCcccHhhHHHHHh-----cCCCCCccccc
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLE-----FHSSCPICRYQ 202 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~-----~~~~CP~CR~~ 202 (290)
+...| ||...+..+...+..- |..-||..|+.--.. ..-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 35678 9998875444444544 999999999853221 24579999763
No 104
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=67.44 E-value=6.8 Score=29.38 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=29.3
Q ss_pred cccccccccccccCCcceecC--CCCcccHhhHHHHHhc
Q 039647 156 DLQCAVWLEEFVMGNEAKQMP--YKHKFHGECLMPWLEF 192 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lp--C~H~FH~~CI~~Wl~~ 192 (290)
.+.|.+|.+-+++. .-++.| =.|+||..|-...++.
T Consensus 15 ~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 57999999999864 345655 5799999999999974
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=67.06 E-value=5.9 Score=30.72 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=27.8
Q ss_pred Ccccccccccccc-----cCCcceec-CCCCcccHhhHHHH------H-hcCCCCCccc
Q 039647 155 QDLQCAVWLEEFV-----MGNEAKQM-PYKHKFHGECLMPW------L-EFHSSCPICR 200 (290)
Q Consensus 155 ~~~~C~ICle~f~-----~~~~~~~l-pC~H~FH~~CI~~W------l-~~~~~CP~CR 200 (290)
....|.+|+..=. .+++++.. .|+..||..|+..+ + ...-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3568999987521 12233333 49999999999531 2 2233577775
No 106
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=66.42 E-value=35 Score=25.86 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=36.6
Q ss_pred CcccccccccccccCCc----ceecCCCCcccHhhHHHHH-hcCCCCCcccccCCC
Q 039647 155 QDLQCAVWLEEFVMGNE----AKQMPYKHKFHGECLMPWL-EFHSSCPICRYQLPS 205 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~----~~~lpC~H~FH~~CI~~Wl-~~~~~CP~CR~~l~~ 205 (290)
....|.||-+++-.... +...-|+--.|+.|..-=. +.++.||.|+..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 45799999999654322 2223488888999988655 567899999887753
No 107
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=66.38 E-value=1.9 Score=31.96 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=26.2
Q ss_pred CcccccccccccccCCcceecC-CCCcccHhhHHHH
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPW 189 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~W 189 (290)
+...|.+|...|..-..-...- ||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4579999999998654333443 9999999996653
No 108
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.77 E-value=5.1 Score=31.91 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=25.7
Q ss_pred CCcccccccccccccCCcceecC-CCCcccHhhHHH
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMP 188 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~ 188 (290)
.+...|.+|...|..-..-.... ||++||..|...
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34578999999998644333444 999999999543
No 109
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.37 E-value=0.43 Score=36.33 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCcccccccccccccCCcceecC-CCCcccHhhHHHHHhc----CCCCCccccc
Q 039647 154 DQDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEF----HSSCPICRYQ 202 (290)
Q Consensus 154 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~----~~~CP~CR~~ 202 (290)
.++..|.||...-.. +.++..- |...||..|+.+=|.. .=.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345789999976432 2333443 9999999999865532 2259999654
No 110
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=64.64 E-value=2.5 Score=32.77 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=33.5
Q ss_pred ccccccccccccCCcceec--CCCCcccHhhHHHHH---h-------cCCCCCcccccC
Q 039647 157 LQCAVWLEEFVMGNEAKQM--PYKHKFHGECLMPWL---E-------FHSSCPICRYQL 203 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~l--pC~H~FH~~CI~~Wl---~-------~~~~CP~CR~~l 203 (290)
..|.||...|......+.. .|..-||..|+.-=- + ..-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 5799999998665555555 489999999985211 1 345799997643
No 111
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=62.84 E-value=2.8 Score=29.26 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=32.8
Q ss_pred Cccccccccccccc-CCcceecC-CCCcccHhhHHHHHh-------cCCCCCcccccC
Q 039647 155 QDLQCAVWLEEFVM-GNEAKQMP-YKHKFHGECLMPWLE-------FHSSCPICRYQL 203 (290)
Q Consensus 155 ~~~~C~ICle~f~~-~~~~~~lp-C~H~FH~~CI~~Wl~-------~~~~CP~CR~~l 203 (290)
++..|.||...... +..++... |...||..|+.+-|. ..=.|+.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45789999986432 23344444 999999999987442 223699886543
No 112
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=62.77 E-value=4.1 Score=30.55 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=32.5
Q ss_pred CcccccccccccccCCcceecC-CCCcccHhhHHHHHh------cCCCCCcccccC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLE------FHSSCPICRYQL 203 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~------~~~~CP~CR~~l 203 (290)
+...|.+|...|..-..-.... ||++||..|...+.. ...+|-.|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 3568999999998644333444 999999999765432 223566664443
No 113
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=61.40 E-value=1 Score=33.17 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=26.6
Q ss_pred cccccccccccCCcceec-CCCCcccHhhHHHHHhc----C-CCCCcccc
Q 039647 158 QCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEF----H-SSCPICRY 201 (290)
Q Consensus 158 ~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~----~-~~CP~CR~ 201 (290)
.|.||...-.. +++... .|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 56677654222 222222 38899999999976643 1 36888865
No 114
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=60.45 E-value=0.91 Score=36.38 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=31.6
Q ss_pred cccccccccccccCCcceec-CCCCcccHhhHHHHHhcCCCCCccccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEFHSSCPICRYQ 202 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~~~~CP~CR~~ 202 (290)
...|.+|...|..-..-... .||.+||..|.........+|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 36899999999754333333 499999999987766667778888543
No 115
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=59.19 E-value=3.6 Score=28.85 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=29.3
Q ss_pred ccccccccccccCCcceecC-CCCcccHhhHHHHHhcCCCCCcc
Q 039647 157 LQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEFHSSCPIC 199 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~~~~CP~C 199 (290)
..|..|+..|.... ....+ |++.||.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999985322 23344 99999999954433555579987
No 116
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=59.06 E-value=6.4 Score=32.32 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=30.4
Q ss_pred cccccccccccccCCcceec-CCCCcccHhhHHHHHh-----------cCCCCCcccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLE-----------FHSSCPICRY 201 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~-----------~~~~CP~CR~ 201 (290)
+..|.||.+- |+ +... .|-..||..||.+=|. ..=.||+|+.
T Consensus 63 ~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 5799999964 33 3343 4999999999997662 1226999964
No 117
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.86 E-value=4.6 Score=30.64 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=26.6
Q ss_pred cccccccccccccCCcceec-C--CC-CcccHhhHHHHHhc----CCCCCccccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQM-P--YK-HKFHGECLMPWLEF----HSSCPICRYQ 202 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~l-p--C~-H~FH~~CI~~Wl~~----~~~CP~CR~~ 202 (290)
..-| ||..... +. .+.. . |. .-||..|+. |.. +-.||.|+..
T Consensus 36 ~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 36 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 4566 9998653 33 2222 2 55 579999997 432 3469999764
No 118
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.55 E-value=6.6 Score=28.26 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=31.1
Q ss_pred cCCcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
+.....|..|.+.+..++.+.. -+..||..| -.|-.|+..|.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 4456789999999876654444 478899888 35888988775
No 119
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=58.01 E-value=5.7 Score=28.46 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=23.9
Q ss_pred cccccccccccccCCcceecC-CCCcccHhhHH
Q 039647 156 DLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLM 187 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~ 187 (290)
+..|.+|...|..-..-.... ||++||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 358999999998643333333 99999999964
No 120
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.83 E-value=6 Score=29.11 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=23.9
Q ss_pred CcccccccccccccCCcceecC-CCCcccHhhHH
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLM 187 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~ 187 (290)
+...|.+|...|..-..--..- ||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4468999999997643333333 99999998843
No 121
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=55.97 E-value=5.7 Score=29.74 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=32.7
Q ss_pred cccccccccccccCCcceecC-CCCcccHhhHHHHH-------hcCCCCCcccccCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWL-------EFHSSCPICRYQLP 204 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl-------~~~~~CP~CR~~l~ 204 (290)
...|.+|...|..-..-...- ||++||..|....+ +...+|-.|...+.
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 468999999998644333333 99999999976532 12345777755443
No 122
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.51 E-value=5.2 Score=34.91 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=26.4
Q ss_pred CcccccccccccccCCcceecC-CCCcccHhhHHHH
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPW 189 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~W 189 (290)
.+..|.+|...|..-..-.... ||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3579999999998654434444 9999999996643
No 123
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=54.17 E-value=5.9 Score=28.48 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=26.6
Q ss_pred cccccccccccccCCcceec-C--CC-CcccHhhHHHHHhc----CCCCCccccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQM-P--YK-HKFHGECLMPWLEF----HSSCPICRYQ 202 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~l-p--C~-H~FH~~CI~~Wl~~----~~~CP~CR~~ 202 (290)
..-| ||..... +. .+.. . |. .-||..|+. |.. +-.||.|+..
T Consensus 16 ~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 4567 8998642 33 2222 2 55 689999997 432 3369999664
No 124
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.79 E-value=13 Score=26.65 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=31.3
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDN 207 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 207 (290)
....|..|.+.+...+.+. .-+..||..| -.|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 4578999999886655443 3578999988 34888888776543
No 125
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=53.55 E-value=2.8 Score=39.44 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred cccccccccccccCCcceec-CCCCcccHhhHHHHHh-------cCCCCCcccccC
Q 039647 156 DLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLE-------FHSSCPICRYQL 203 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~-------~~~~CP~CR~~l 203 (290)
...|.+|...|..-..-..+ .||++||..|...++. ...+|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 47899999999754332333 4999999999976652 234677775544
No 126
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=53.05 E-value=6.3 Score=27.71 Aligned_cols=38 Identities=24% Similarity=0.565 Sum_probs=18.8
Q ss_pred cccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCC
Q 039647 158 QCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 158 ~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
.|..|.+.+..++.+..+ +..||..|+ .|-.|+..|..
T Consensus 2 ~C~~C~~~I~~~~~v~a~--~~~~H~~CF--------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSL--GKDWHRPCL--------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEET--TEEEETTTC--------BCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEEC--CccccCCCC--------CccccCccCCC
Confidence 355666655543333222 555666552 35555555543
No 127
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=52.87 E-value=4.9 Score=26.98 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=12.1
Q ss_pred CCcCCCCCCCCceeecc
Q 039647 1 MGSKFPFCETGFVEQMS 17 (290)
Q Consensus 1 ~e~~Cp~C~~GFvEe~~ 17 (290)
++++||+|+=--|..+.
T Consensus 22 P~IrCpyCGyrii~KvR 38 (48)
T 4ayb_P 22 PGVRCPYCGYKIIFMVR 38 (48)
T ss_dssp SSSCCTTTCCSCEECCC
T ss_pred CCcccCccCcEEEEEec
Confidence 36899999876555443
No 128
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=52.61 E-value=4 Score=29.45 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=32.5
Q ss_pred cCCcccccccccccccCCcceecC-CCCcccHhhHHHHHh-----cCCCCCcccccC
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLE-----FHSSCPICRYQL 203 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~-----~~~~CP~CR~~l 203 (290)
+.....-.||...+..+...+..- |.--||..|+.---. ..-.||.|+...
T Consensus 6 ~~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 6 MATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp TCCCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred CCCCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 334445559988765444444443 999999999953221 245799997653
No 129
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=52.41 E-value=5.6 Score=21.05 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=10.2
Q ss_pred CcCCCCCCCCcee
Q 039647 2 GSKFPFCETGFVE 14 (290)
Q Consensus 2 e~~Cp~C~~GFvE 14 (290)
-++|+.|+..|..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 3689999998853
No 130
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.25 E-value=7.8 Score=27.23 Aligned_cols=41 Identities=17% Similarity=0.421 Sum_probs=30.5
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
...|..|.+.+..++.+. .-+..||..|+ .|-.|+..|...
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccCCC
Confidence 468999999988665443 35788998883 488998887643
No 131
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=51.68 E-value=11 Score=26.97 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=31.0
Q ss_pred CCccccccccccc-ccCCcceecC-CCCcccHhhHHHHHh--cCCCCCcccc
Q 039647 154 DQDLQCAVWLEEF-VMGNEAKQMP-YKHKFHGECLMPWLE--FHSSCPICRY 201 (290)
Q Consensus 154 ~~~~~C~ICle~f-~~~~~~~~lp-C~H~FH~~CI~~Wl~--~~~~CP~CR~ 201 (290)
.++..|.||.+.- ..++.++..- |.-.||..|+.+-+. ..=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3568999998763 2233344444 999999999875331 1225888854
No 132
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=50.41 E-value=6.6 Score=31.80 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=23.8
Q ss_pred Ccccccccccccc-cCC-cceecCCCCcccHhhHH
Q 039647 155 QDLQCAVWLEEFV-MGN-EAKQMPYKHKFHGECLM 187 (290)
Q Consensus 155 ~~~~C~ICle~f~-~~~-~~~~lpC~H~FH~~CI~ 187 (290)
....|.+|...|. .+. .....-|+|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4679999999993 333 33444599999998844
No 133
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=49.38 E-value=7.7 Score=23.20 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=20.5
Q ss_pred ccccccccccccCCcceecCCCCcccHhhH
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECL 186 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI 186 (290)
..|+.|...+-..+++. .=+..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 57999998876654433 35889999883
No 134
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.42 E-value=2.8 Score=30.75 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=28.4
Q ss_pred ccccccccccccCCcceec-CCCCcccHhhHHHHHhc-----CCCCCcccc
Q 039647 157 LQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEF-----HSSCPICRY 201 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~-----~~~CP~CR~ 201 (290)
..|.||...=. +..++.. .|...||..|+.+=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 47889986422 2333333 39999999999865532 225888854
No 135
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=47.05 E-value=3.2 Score=29.78 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=27.0
Q ss_pred cccccccccccCCcceecC-CCCcccHhhHHHHHhc-----CCCCCcccc
Q 039647 158 QCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEF-----HSSCPICRY 201 (290)
Q Consensus 158 ~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~-----~~~CP~CR~ 201 (290)
.|.||...-. +..++..- |...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5677775421 22333333 8999999999865532 226888864
No 136
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=46.94 E-value=2 Score=33.22 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=27.8
Q ss_pred ccccccccccccCCcceecC-CCCcccHhhHHHHHhc----CCCCCcccc
Q 039647 157 LQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEF----HSSCPICRY 201 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~----~~~CP~CR~ 201 (290)
..|.||...-.. +++.... |...||..|+.+=|.. .-.||.|+.
T Consensus 55 ~~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 55 KVCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred CcccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 367788765332 2233333 9999999999875532 225888854
No 137
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=46.75 E-value=6.6 Score=20.87 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=9.9
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 689999988864
No 138
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.69 E-value=3.9 Score=29.75 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=29.4
Q ss_pred cccccccccccccCCcceec--CCCCcccHhhHHHHHh---------cCCCCCccccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQM--PYKHKFHGECLMPWLE---------FHSSCPICRYQ 202 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~l--pC~H~FH~~CI~~Wl~---------~~~~CP~CR~~ 202 (290)
...| ||......+.-+..= .|..-||..|+.---. .+-.||.|+..
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 4577 899875444322222 4999999999853211 24579999764
No 139
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=46.66 E-value=11 Score=29.24 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=22.0
Q ss_pred cccccccccccc----C--Cccee-cCCCCcccHhhHHHH
Q 039647 157 LQCAVWLEEFVM----G--NEAKQ-MPYKHKFHGECLMPW 189 (290)
Q Consensus 157 ~~C~ICle~f~~----~--~~~~~-lpC~H~FH~~CI~~W 189 (290)
..|.||+..-.. | ++.+. -.|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876411 1 22333 349999999999865
No 140
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=46.01 E-value=8 Score=22.18 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=10.6
Q ss_pred CcCCCCCCCCcee
Q 039647 2 GSKFPFCETGFVE 14 (290)
Q Consensus 2 e~~Cp~C~~GFvE 14 (290)
-++|+.|+..|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 3789999999864
No 141
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=45.54 E-value=11 Score=29.42 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=30.7
Q ss_pred cCCcccccccccccccCCcceec---CCCCcccHhhHHHHHhcC----CCCCcccccCCCC
Q 039647 153 IDQDLQCAVWLEEFVMGNEAKQM---PYKHKFHGECLMPWLEFH----SSCPICRYQLPSD 206 (290)
Q Consensus 153 ~~~~~~C~ICle~f~~~~~~~~l---pC~H~FH~~CI~~Wl~~~----~~CP~CR~~l~~~ 206 (290)
...+..|.||.+. | +++.. .|-..||..|+. |... -.||.|.-.+..+
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 3456889999942 3 34444 388999999997 5331 2488775544443
No 142
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=45.45 E-value=7.2 Score=20.43 Aligned_cols=12 Identities=50% Similarity=0.838 Sum_probs=9.6
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 679999988864
No 143
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=45.34 E-value=7.2 Score=28.02 Aligned_cols=30 Identities=10% Similarity=0.185 Sum_probs=23.1
Q ss_pred CcccccccccccccCCcceecCC-CCcccHhhHHH
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPY-KHKFHGECLMP 188 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC-~H~FH~~CI~~ 188 (290)
+..-|.||.++ ..++.+-| +-+||..|...
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHH
Confidence 34689999988 23778889 89999999443
No 144
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=44.68 E-value=16 Score=29.38 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=28.9
Q ss_pred cccccccccccccCCcceecC-CCCcccHhhHHHH-----H-hc-----CCCCCcccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPW-----L-EF-----HSSCPICRY 201 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~W-----l-~~-----~~~CP~CR~ 201 (290)
+..|.||.+- .++.... |-..||..||.+- | +. .=.|++|+.
T Consensus 57 ~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4679999864 2333333 8999999999985 2 22 136999954
No 145
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.41 E-value=19 Score=26.10 Aligned_cols=42 Identities=17% Similarity=0.384 Sum_probs=30.5
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
....|..|.+.+...+.+ ..-+..||..|+ .|-.|...|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCCC
Confidence 457899999998765543 346788999884 477888777654
No 146
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=44.39 E-value=3.7 Score=36.34 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=25.8
Q ss_pred ccccccccccccCCcceecC-CCCcccHhhHHHHHhc-----CCCCCcccc
Q 039647 157 LQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWLEF-----HSSCPICRY 201 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl~~-----~~~CP~CR~ 201 (290)
..|.||...=. +..+...- |...||..|+.+=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 36888876422 22333443 9999999999975542 225999965
No 147
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=43.82 E-value=8.9 Score=20.32 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=10.3
Q ss_pred CcCCCCCCCCcee
Q 039647 2 GSKFPFCETGFVE 14 (290)
Q Consensus 2 e~~Cp~C~~GFvE 14 (290)
-++|+.|+..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 3689999988864
No 148
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.59 E-value=1.1 Score=35.04 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=29.3
Q ss_pred ccccccccccccCCcceec-CCCCcccHhhHHHHHhc----CCCCCcccccC
Q 039647 157 LQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLEF----HSSCPICRYQL 203 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~~----~~~CP~CR~~l 203 (290)
..|.||...-..+. +... .|...||..|+.+=|.. .=.||.|+..+
T Consensus 59 ~~C~~C~~~~~~~~-ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 59 KSCILCGTSENDDQ-LLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCCTTTTCCTTTTT-EEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CccCcccccCCCCc-eEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 46888887533322 3333 49999999999874432 22488886543
No 149
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=48.99 E-value=5.1 Score=21.08 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=10.8
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 6899999999754
No 150
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=41.91 E-value=8.7 Score=20.60 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=10.2
Q ss_pred CcCCCCCCCCcee
Q 039647 2 GSKFPFCETGFVE 14 (290)
Q Consensus 2 e~~Cp~C~~GFvE 14 (290)
-++|+.|+..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1paa_A 2 AYACGLCNRAFTR 14 (30)
T ss_dssp CSBCTTTCCBCSS
T ss_pred CcCCcccCcccCC
Confidence 3689999988853
No 151
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.44 E-value=7.7 Score=27.82 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=29.5
Q ss_pred ccccccccccccCCcceec-CCCCcccHhhHHHHH---------hcCCCCCccccc
Q 039647 157 LQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWL---------EFHSSCPICRYQ 202 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl---------~~~~~CP~CR~~ 202 (290)
.-| ||...+.. ...+.. .|..-||..|+.--. ...-.||.|+..
T Consensus 17 ~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 89988753 333333 399999999985221 246689999754
No 152
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=40.59 E-value=11 Score=27.20 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=12.0
Q ss_pred CcCCCCCCCC-ceeeccC
Q 039647 2 GSKFPFCETG-FVEQMSS 18 (290)
Q Consensus 2 e~~Cp~C~~G-FvEe~~~ 18 (290)
.++||.|++| .++....
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~ 19 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKD 19 (78)
T ss_dssp -CBCTTTSSSBEEEEEEE
T ss_pred ceECCCCCCCeeEeEEEE
Confidence 4799999988 6665543
No 153
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=40.17 E-value=6.4 Score=20.86 Aligned_cols=12 Identities=8% Similarity=0.191 Sum_probs=9.7
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 679999988864
No 154
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.96 E-value=20 Score=24.51 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=29.0
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
...|..|.+.+..++.+ ...-+..||..|+ .|-.|...|...
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCCC
Confidence 35899999988764332 2235788998874 488888877543
No 155
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=39.78 E-value=10 Score=21.27 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=11.6
Q ss_pred cCCCCCCCCceeec
Q 039647 3 SKFPFCETGFVEQM 16 (290)
Q Consensus 3 ~~Cp~C~~GFvEe~ 16 (290)
++|+.|+..|...-
T Consensus 3 ~~C~~C~k~f~~~~ 16 (32)
T 2kfq_A 3 FACPACPKRFMRSD 16 (32)
T ss_dssp SSSSSSCTTHHHHH
T ss_pred CCCCCCCcccCCHH
Confidence 68999999997653
No 156
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.74 E-value=23 Score=24.91 Aligned_cols=42 Identities=17% Similarity=0.483 Sum_probs=30.0
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
...|..|.+.+..++.++ ..-+..||..|+ .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEE-EECccccccccC--------chhhCCCccCCC
Confidence 368999999987655432 235788998883 588888877654
No 157
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=38.96 E-value=10 Score=25.80 Aligned_cols=42 Identities=19% Similarity=0.472 Sum_probs=30.0
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
...|..|.+.+...+.++. .=+..||..|+ .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 4689999999876554332 35778999885 588888777544
No 158
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.73 E-value=6.9 Score=22.00 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=10.1
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 2elx_A 8 YVCALCLKKFVS 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCcchhCC
Confidence 689999998875
No 159
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=38.56 E-value=12 Score=21.14 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=9.9
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 689999998864
No 160
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=37.69 E-value=7.4 Score=20.72 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=9.5
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 679999988854
No 161
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=36.98 E-value=23 Score=27.36 Aligned_cols=27 Identities=19% Similarity=0.237 Sum_probs=12.7
Q ss_pred cccccccccccCCcceecCCCCcccHhh
Q 039647 158 QCAVWLEEFVMGNEAKQMPYKHKFHGEC 185 (290)
Q Consensus 158 ~C~ICle~f~~~~~~~~lpC~H~FH~~C 185 (290)
.|..|.+.+...+.++. .-++.||..|
T Consensus 10 ~C~~C~~~I~~~e~~~~-a~~~~~H~~C 36 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR-VKDKVYHLEC 36 (123)
T ss_dssp CCSSSSCCCCTTCCCCC-CSSCCCCTTT
T ss_pred cccCCCCeecCCceEEE-ECCccccccc
Confidence 56666665543322211 1355566555
No 162
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.67 E-value=8.1 Score=20.49 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=9.8
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 679999988864
No 163
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.38 E-value=12 Score=21.17 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=10.0
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elr_A 10 HLCDMCGKKFKS 21 (36)
T ss_dssp CBCTTTCCBCSS
T ss_pred eecCcCCCCcCc
Confidence 689999998864
No 164
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.31 E-value=35 Score=24.12 Aligned_cols=40 Identities=15% Similarity=0.286 Sum_probs=29.2
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
...|..|.+.+. +..+ ..-+..||..| -.|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCC--------CEeCCCCCccCCC
Confidence 468999999887 3332 23578899888 3588998888754
No 165
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.51 E-value=7.5 Score=20.83 Aligned_cols=13 Identities=15% Similarity=0.524 Sum_probs=10.5
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 6899999988654
No 166
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=36.17 E-value=7.2 Score=27.76 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=28.5
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
...|..|.+.+..++.+ ..-+..||..|+ .|-.|+..|...
T Consensus 7 ~~~C~~C~~~I~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV--QCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEE--EETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeE--EeCCcccccccC--------ccCCCCCCCCCC
Confidence 46899999988665543 235788888874 378888777544
No 167
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.13 E-value=22 Score=24.34 Aligned_cols=41 Identities=15% Similarity=0.393 Sum_probs=28.1
Q ss_pred ccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
..|..|.+.+...+.++. .-+..||..|+ .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccCC--------cccccCCccCCC
Confidence 579999998876443222 25778898873 488888777543
No 168
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=35.94 E-value=14 Score=28.62 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=10.4
Q ss_pred ccHhhHHHHHh
Q 039647 181 FHGECLMPWLE 191 (290)
Q Consensus 181 FH~~CI~~Wl~ 191 (290)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 169
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.73 E-value=11 Score=26.71 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=30.7
Q ss_pred cccccccccccccCCcceecC-CCCcccHhhHHHHH----hcCCCCCccccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWL----EFHSSCPICRYQ 202 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl----~~~~~CP~CR~~ 202 (290)
...| ||...+..+...+..- |..-||..|+.--. ..+-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3578 7998765554444444 99999999986432 134469999653
No 170
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=35.59 E-value=14 Score=28.52 Aligned_cols=11 Identities=45% Similarity=1.090 Sum_probs=10.4
Q ss_pred ccHhhHHHHHh
Q 039647 181 FHGECLMPWLE 191 (290)
Q Consensus 181 FH~~CI~~Wl~ 191 (290)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 171
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.10 E-value=8.5 Score=20.30 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=9.2
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 679999888753
No 172
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.81 E-value=29 Score=23.80 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=28.8
Q ss_pred ccccccccccccc--CCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCC
Q 039647 156 DLQCAVWLEEFVM--GNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 156 ~~~C~ICle~f~~--~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
...|..|.+.+.. ++.+ ...-+..||..|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCCC
Confidence 3579999998874 2233 2236888999884 58889887753
No 173
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.27 E-value=9.2 Score=20.27 Aligned_cols=12 Identities=17% Similarity=0.634 Sum_probs=9.4
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 679999888863
No 174
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.86 E-value=9.2 Score=21.79 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=10.1
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elq_A 10 FKCSLCEYATRS 21 (36)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 689999998864
No 175
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=39.99 E-value=8.7 Score=20.52 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=10.5
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 4 ~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 4 YVCIHCQRQFADP 16 (30)
Confidence 6899999888754
No 176
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=33.64 E-value=9.6 Score=21.49 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=9.9
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 1srk_A 8 FVCRICLSAFTT 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eeCCCCCcccCC
Confidence 679999998864
No 177
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.61 E-value=5.5 Score=21.35 Aligned_cols=12 Identities=25% Similarity=0.730 Sum_probs=9.5
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 679999888864
No 178
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.42 E-value=9.5 Score=21.60 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=9.8
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elt_A 10 YKCPQCSYASAI 21 (36)
T ss_dssp EECSSSSCEESS
T ss_pred CCCCCCCcccCC
Confidence 689999988854
No 179
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=33.38 E-value=21 Score=24.03 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=27.6
Q ss_pred ccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCC
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
..|..|.+.+. ++. ...-+..||..|+ .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~-~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRV--VNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCE--ECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ceE--EEECccccccCcC--------EECCCCCCCCC
Confidence 57999999887 432 3345788998883 48889887764
No 180
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.31 E-value=11 Score=29.08 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=23.7
Q ss_pred ccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
..|++|..+++... ++.+|..|-.. ++....||-|..+|.
T Consensus 33 ~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHH
Confidence 78999998876422 12224444221 234556999987763
No 181
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.25 E-value=18 Score=24.37 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=9.8
Q ss_pred CcCCCCCCCCce
Q 039647 2 GSKFPFCETGFV 13 (290)
Q Consensus 2 e~~Cp~C~~GFv 13 (290)
-+.||.|+-.|-
T Consensus 12 ~~~CPrCn~~f~ 23 (49)
T 2e72_A 12 RKICPRCNAQFR 23 (49)
T ss_dssp CCCCTTTCCCCS
T ss_pred ceeCCccccccc
Confidence 468999999884
No 182
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.82 E-value=11 Score=21.93 Aligned_cols=13 Identities=8% Similarity=0.133 Sum_probs=10.6
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 10 ~~C~~C~k~f~~~ 22 (37)
T 2elm_A 10 YYCSQCHYSSITK 22 (37)
T ss_dssp EECSSSSCEEECH
T ss_pred eECCCCCcccCCH
Confidence 6899999999753
No 183
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=32.82 E-value=6.2 Score=27.29 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=24.7
Q ss_pred cccccccccccccCCcceec-C--CC-CcccHhhHHHHHhc----CCCCCcccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQM-P--YK-HKFHGECLMPWLEF----HSSCPICRY 201 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~l-p--C~-H~FH~~CI~~Wl~~----~~~CP~CR~ 201 (290)
..-| ||..... +. .+.. . |. .-||..|+. |.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 9988642 32 2222 2 54 579999997 432 336888854
No 184
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.53 E-value=10 Score=21.79 Aligned_cols=12 Identities=33% Similarity=0.874 Sum_probs=10.2
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elp_A 10 MKCPYCDFYFMK 21 (37)
T ss_dssp EECSSSSCEECS
T ss_pred eECCCCChhhcc
Confidence 689999998865
No 185
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.13 E-value=34 Score=23.33 Aligned_cols=39 Identities=28% Similarity=0.512 Sum_probs=24.6
Q ss_pred ccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
..|..|.+.+...+.. ...=+..||..|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAG-VVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCC-EECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceE-EEECCCeEcccCC--------cccccCCcCC
Confidence 5788888776543222 2234677888773 4777877774
No 186
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.02 E-value=24 Score=24.81 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=28.2
Q ss_pred CcccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 155 QDLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 155 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
....|..|.+.+.. . ....-+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 35789999998764 3 23346789999884 5888887764
No 187
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=31.92 E-value=6.8 Score=27.06 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=25.4
Q ss_pred cccccccccccccCCcceec-C--CC-CcccHhhHHHHHhc----CCCCCcccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQM-P--YK-HKFHGECLMPWLEF----HSSCPICRY 201 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~l-p--C~-H~FH~~CI~~Wl~~----~~~CP~CR~ 201 (290)
..-| ||..... ++ .+.. . |. .-||..|+. |.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4556 9998642 32 2222 2 65 689999997 432 336888854
No 188
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.44 E-value=33 Score=24.72 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=29.1
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
...|..|.+.+.. . . ...-+..||..|+ .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~~-~-~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG-A-V-VKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS-C-C-EESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCCcccCCCEecc-c-E-EEECCceECccCC--------EecCCCCCCCCC
Confidence 4689999998774 2 2 3336789999883 488898887643
No 189
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.34 E-value=31 Score=24.17 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=26.6
Q ss_pred ccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCC
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
..|..|.+.+. +.. ...-+..||..|+ .|-.|...|..
T Consensus 16 ~~C~~C~~~I~-~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPF--MVAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCC--BCCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceE--EEECCceeccccC--------CccCCCCccCC
Confidence 57999998877 332 2235788888773 48888887754
No 190
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=31.19 E-value=20 Score=29.52 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=29.5
Q ss_pred Ccccccccccccc--cCCcceecCCCCcccHhhHHHHHhcCC--CCCcccc
Q 039647 155 QDLQCAVWLEEFV--MGNEAKQMPYKHKFHGECLMPWLEFHS--SCPICRY 201 (290)
Q Consensus 155 ~~~~C~ICle~f~--~~~~~~~lpC~H~FH~~CI~~Wl~~~~--~CP~CR~ 201 (290)
....|.+|...|. .+......-|+|.+|..|-. |+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 3689999999864 33334455599999999962 332211 3666643
No 191
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.85 E-value=11 Score=21.37 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=9.9
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elv_A 10 YDCHICERKFKN 21 (36)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCccCC
Confidence 689999988864
No 192
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.72 E-value=11 Score=21.37 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=9.5
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2els_A 10 FTCEYCNKVFKF 21 (36)
T ss_dssp EECTTTCCEESS
T ss_pred EECCCCCceeCC
Confidence 679999988853
No 193
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.02 E-value=32 Score=23.91 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=27.5
Q ss_pred cccccccccccc--CCcceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 157 LQCAVWLEEFVM--GNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 157 ~~C~ICle~f~~--~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
..|..|.+.+.. .... ...-+..||..|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCcccC--------ChhhCCCcCC
Confidence 579999998774 2222 2336788999884 5888888775
No 194
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.02 E-value=7.6 Score=27.01 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=24.5
Q ss_pred ccccccccccccCCcceec---C--CCCcccHhhHHHHHhc
Q 039647 157 LQCAVWLEEFVMGNEAKQM---P--YKHKFHGECLMPWLEF 192 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~l---p--C~H~FH~~CI~~Wl~~ 192 (290)
..|+-|.-.++..+--..| . |++.|+..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 5788888887755432222 2 7788888888887643
No 195
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.99 E-value=28 Score=24.10 Aligned_cols=42 Identities=19% Similarity=0.472 Sum_probs=28.8
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
...|..|.+.+...+.++. .-+..||..|+ .|-.|+..|...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEeccccC--------eECCCCCCCCCC
Confidence 4689999998875444322 25778898873 477887777543
No 196
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.88 E-value=20 Score=21.25 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=10.6
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (44)
T 2en7_A 13 YVCNECGKAFRSK 25 (44)
T ss_dssp SCCTTTCCCCSSH
T ss_pred eECCCCCCccCCH
Confidence 6899999998753
No 197
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.71 E-value=13 Score=29.10 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=17.3
Q ss_pred ceecCCCCcccHhhHHHHHhcCCCCCcccccCCC
Q 039647 172 AKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 172 ~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
.+...||+.|. .-+.....||.|+.+-..
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 34555888881 111234679999876543
No 198
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.63 E-value=20 Score=20.94 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=10.8
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 12 ~~C~~C~k~f~~~ 24 (42)
T 2ytb_A 12 YRCDQCGKAFSQK 24 (42)
T ss_dssp BCCTTTTCCBSSH
T ss_pred eeCCCccchhCCH
Confidence 6899999999753
No 199
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.59 E-value=26 Score=25.28 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=28.6
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
...|..|.+.+. ++.+ ..-+..||..|+ .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFL--VALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCC-SCEE--EETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCccCCCEec-ceEE--EECCccccccCC--------ccCCCCCCCCCC
Confidence 468999999884 3332 335788998873 588898887643
No 200
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.46 E-value=30 Score=24.30 Aligned_cols=39 Identities=21% Similarity=0.600 Sum_probs=27.5
Q ss_pred ccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
..|..|.+.+. +..+ ..-+..||..|+ .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~-~~~v--~a~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVV--SALGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCCE--EETTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEec-cceE--EECCceeCccCC--------ccccCCCCCCCC
Confidence 58999999877 3322 235788998873 488888877643
No 201
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.06 E-value=21 Score=21.53 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=10.6
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~F~~~ 25 (46)
T 2yti_A 13 YKCNECGKVFTQN 25 (46)
T ss_dssp TCCSSSCCCCSSH
T ss_pred eECCCCCcccCCh
Confidence 6899999998753
No 202
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.85 E-value=18 Score=21.79 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=10.5
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~F~~~ 25 (46)
T 2enf_A 13 YKCNECGKVFTQN 25 (46)
T ss_dssp CBCSSSCCBCSSH
T ss_pred eECCCCCcccCCH
Confidence 6899999988653
No 203
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=28.54 E-value=13 Score=27.89 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=9.1
Q ss_pred cCCCCCCCCce
Q 039647 3 SKFPFCETGFV 13 (290)
Q Consensus 3 ~~Cp~C~~GFv 13 (290)
+|||.|+.-|.
T Consensus 52 FkCP~CgEEFy 62 (95)
T 2k5c_A 52 FKCPVCGEEFY 62 (95)
T ss_dssp EECTTTCCEEE
T ss_pred hcCCCccHHHh
Confidence 68999997775
No 204
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.33 E-value=22 Score=21.48 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=10.1
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eoh_A 13 YECKECRKTFIQ 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred cCCCCcCchhCC
Confidence 689999998864
No 205
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=27.68 E-value=14 Score=21.55 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=9.8
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 7 ~~C~~C~k~f~~ 18 (39)
T 1njq_A 7 YTCSFCKREFRS 18 (39)
T ss_dssp EECTTTCCEESS
T ss_pred eECCCCCcccCC
Confidence 679999988864
No 206
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=27.61 E-value=15 Score=27.72 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.1
Q ss_pred CcCCCCCCCCceeecc
Q 039647 2 GSKFPFCETGFVEQMS 17 (290)
Q Consensus 2 e~~Cp~C~~GFvEe~~ 17 (290)
+.+||+|+.-|+.+=.
T Consensus 48 ~~~CpYCg~~y~~~~~ 63 (87)
T 2jz8_A 48 EKICPYCSTLYRYDPS 63 (87)
T ss_dssp EECCTTTCCEEECCTT
T ss_pred eEECCCCCCEeEcCCC
Confidence 4689999999997643
No 207
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=27.58 E-value=13 Score=27.68 Aligned_cols=15 Identities=7% Similarity=0.437 Sum_probs=12.5
Q ss_pred CcCCCCCCCCceeec
Q 039647 2 GSKFPFCETGFVEQM 16 (290)
Q Consensus 2 e~~Cp~C~~GFvEe~ 16 (290)
+++||+|+--|+-+=
T Consensus 53 ~~~CpYCg~~f~l~~ 67 (80)
T 2jvm_A 53 FVECGYCDRRYIHES 67 (80)
T ss_dssp EEECSSSSCEEEEHH
T ss_pred eEECCCCCCEEEecC
Confidence 368999999999764
No 208
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.52 E-value=20 Score=20.99 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=9.9
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 11 ~~C~~C~k~f~~ 22 (42)
T 2yte_A 11 YSCAECKETFSD 22 (42)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCCccCC
Confidence 689999988864
No 209
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.33 E-value=23 Score=21.34 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=9.9
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2emz_A 13 FKCNECGKGFGR 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred eECCCCCcccCC
Confidence 689999988864
No 210
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.27 E-value=23 Score=21.31 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=10.0
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eq1_A 13 YKCNECGKAFRA 24 (46)
T ss_dssp CCCTTTTCCCSS
T ss_pred eECCcCChhhCC
Confidence 689999988864
No 211
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.11 E-value=24 Score=20.69 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=10.6
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 12 ~~C~~C~k~f~~~ 24 (42)
T 2eos_A 12 YPCEICGTRFRHL 24 (42)
T ss_dssp BCCSSSCCCBSSH
T ss_pred EECCCCCCccCCH
Confidence 6899999988753
No 212
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.05 E-value=22 Score=24.26 Aligned_cols=40 Identities=23% Similarity=0.487 Sum_probs=26.9
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~ 206 (290)
...|..|.+.+. +..+ ..-+..||..|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVI--KAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCC-SCCE--EETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEec-ceEE--EECcccccccCC--------EeCCCCCcCCCC
Confidence 357888988876 3322 235778888874 578888777654
No 213
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.02 E-value=24 Score=21.01 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=10.0
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 11 ~~C~~C~k~f~~ 22 (43)
T 2yrm_A 11 FFCNECDCRFSE 22 (43)
T ss_dssp BCCSSSCCCBSS
T ss_pred EECCCCCCeeCC
Confidence 689999998864
No 214
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.83 E-value=25 Score=21.12 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=10.1
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eq2_A 13 YQCNECGKAFSQ 24 (46)
T ss_dssp SSCCSSCCCCSS
T ss_pred eECCCCCcccCC
Confidence 689999998865
No 215
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.82 E-value=25 Score=21.22 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=10.6
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (46)
T 2yth_A 13 FQCEECGKRFTQN 25 (46)
T ss_dssp BCCSSSCCCBSSH
T ss_pred CCCCCCCcccCCH
Confidence 6899999988653
No 216
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=26.65 E-value=9.4 Score=36.97 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=33.3
Q ss_pred ccccccccccccCCcceecC-CCCcccHhhHHHHH---h--cCCCCCcccccCCCC
Q 039647 157 LQCAVWLEEFVMGNEAKQMP-YKHKFHGECLMPWL---E--FHSSCPICRYQLPSD 206 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~Wl---~--~~~~CP~CR~~l~~~ 206 (290)
...+||...+..+...+.+- |..-||..|+.--- . .+-.||.|+......
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~ 60 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPS 60 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCc
Confidence 45679998875444455554 99999999995211 1 345899997654433
No 217
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.58 E-value=25 Score=21.10 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=10.0
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ep1_A 13 YECSDCGKSFIK 24 (46)
T ss_dssp SCCSSSCCCCSS
T ss_pred cCCCCCCchhCC
Confidence 689999998864
No 218
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.50 E-value=10 Score=21.70 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=9.4
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elo_A 10 YSCPVCEKSFSE 21 (37)
T ss_dssp CEETTTTEECSS
T ss_pred cCCCCCCCccCC
Confidence 679999888854
No 219
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=26.48 E-value=22 Score=23.48 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=12.1
Q ss_pred cCCCCCCCCceeeccC
Q 039647 3 SKFPFCETGFVEQMSS 18 (290)
Q Consensus 3 ~~Cp~C~~GFvEe~~~ 18 (290)
++|+.|+..|...-..
T Consensus 40 ~~C~~C~k~f~~~~~~ 55 (62)
T 1vd4_A 40 FRCTFCHTEVEEDESA 55 (62)
T ss_dssp EBCSSSCCBCEECTTC
T ss_pred EECCCCCCccccCccc
Confidence 6799999999765443
No 220
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.31 E-value=27 Score=27.23 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=28.5
Q ss_pred cccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 156 DLQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
...|..|.+.+.... +...-+..||..| -.|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~--~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF--LLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS--EEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE--EEEeCCcEEcccc--------cCcCcCCCccc
Confidence 468999999876432 2233688899988 45889988875
No 221
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.68 E-value=26 Score=21.17 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=10.0
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2eom_A 13 HRCSDCGKFFLQ 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred cCCCCCCCeeCC
Confidence 689999988864
No 222
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.67 E-value=47 Score=22.44 Aligned_cols=38 Identities=24% Similarity=0.495 Sum_probs=26.8
Q ss_pred ccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCC
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
..|..|.+.+.. +. ...-+..||..|+ .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-SE--EESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCcccCCeecc-ce--EEECccccCCCCC--------ccCCCCCcCCc
Confidence 579999988763 32 3335788998873 48888887753
No 223
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=25.59 E-value=28 Score=23.79 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=11.1
Q ss_pred CcccccccccccccC
Q 039647 155 QDLQCAVWLEEFVMG 169 (290)
Q Consensus 155 ~~~~C~ICle~f~~~ 169 (290)
+-..|++|...++..
T Consensus 9 ~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 9 EILACPACHAPLEER 23 (56)
T ss_dssp TSCCCSSSCSCEEEE
T ss_pred hheeCCCCCCcceec
Confidence 457899999876643
No 224
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.59 E-value=22 Score=21.35 Aligned_cols=13 Identities=15% Similarity=0.186 Sum_probs=10.3
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (46)
T 2emg_A 13 FICSECGKVFTHK 25 (46)
T ss_dssp CBCTTTCCBCSSH
T ss_pred EECCccCcccCCH
Confidence 6899999888643
No 225
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.54 E-value=20 Score=22.25 Aligned_cols=11 Identities=45% Similarity=0.845 Sum_probs=6.8
Q ss_pred CCCcccccCCC
Q 039647 195 SCPICRYQLPS 205 (290)
Q Consensus 195 ~CP~CR~~l~~ 205 (290)
.||+|.+.+..
T Consensus 7 iCP~C~~~l~s 17 (34)
T 3mjh_B 7 ICPQCMKSLGS 17 (34)
T ss_dssp ECTTTCCEESS
T ss_pred CCcHHHHHcCC
Confidence 47777666544
No 226
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.53 E-value=26 Score=21.02 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=9.7
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eoq_A 13 FKCDICGKSFCG 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred cCCCcCCchhCC
Confidence 689999988864
No 227
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=25.26 E-value=7 Score=28.85 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=23.5
Q ss_pred cccccccccc--CCcceecC-CCCcccHhhHHHHHhcCC
Q 039647 159 CAVWLEEFVM--GNEAKQMP-YKHKFHGECLMPWLEFHS 194 (290)
Q Consensus 159 C~ICle~f~~--~~~~~~lp-C~H~FH~~CI~~Wl~~~~ 194 (290)
|+-|-..+.. +...+..| |++.||..|-.+|=++|.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~ 66 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHR 66 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTT
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCC
Confidence 6656554432 22335666 999999999999855554
No 228
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=25.22 E-value=13 Score=26.55 Aligned_cols=7 Identities=43% Similarity=0.709 Sum_probs=3.2
Q ss_pred CcCCCCC
Q 039647 2 GSKFPFC 8 (290)
Q Consensus 2 e~~Cp~C 8 (290)
++|||-|
T Consensus 7 ~VKCp~C 13 (66)
T 1qxf_A 7 KVKCPDC 13 (66)
T ss_dssp EEECTTT
T ss_pred EEECCCC
Confidence 4444444
No 229
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.20 E-value=27 Score=20.81 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=9.9
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2eou_A 13 SECQECGKIFRH 24 (44)
T ss_dssp CCCTTTCCCCSS
T ss_pred eECCCCCcccCC
Confidence 689999988864
No 230
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.96 E-value=28 Score=20.87 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=10.3
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~F~~~ 25 (47)
T 2epx_A 13 YECIECGKAFIQN 25 (47)
T ss_dssp BCCSSSCCCBSSH
T ss_pred EECCccCchhCCh
Confidence 6899999888753
No 231
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=24.94 E-value=21 Score=21.18 Aligned_cols=13 Identities=46% Similarity=1.068 Sum_probs=9.2
Q ss_pred CCCCcccccCCCC
Q 039647 194 SSCPICRYQLPSD 206 (290)
Q Consensus 194 ~~CP~CR~~l~~~ 206 (290)
..||+|+..++..
T Consensus 4 ~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 4 FCCPKCQYQAPDM 16 (28)
T ss_dssp EECTTSSCEESSH
T ss_pred ccCccccccCcCh
Confidence 3688898876643
No 232
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.50 E-value=24 Score=21.25 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=10.0
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2enh_A 13 YECDVCRKAFSH 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred cCCCCcCchhCC
Confidence 689999988864
No 233
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.32 E-value=17 Score=21.78 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=10.0
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~F~~ 24 (44)
T 2epv_A 13 YECNECGKAFIW 24 (44)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCc
Confidence 689999998865
No 234
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.32 E-value=25 Score=21.21 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=10.0
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2em6_A 13 YKCDVCGKEFSQ 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred eECCCCCcccCC
Confidence 689999988864
No 235
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=24.10 E-value=29 Score=20.80 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=10.3
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~F~~~ 25 (46)
T 2em0_A 13 WKCRECDMCFSQA 25 (46)
T ss_dssp CCCSSSCCCCSSH
T ss_pred eECCCCCcccCCH
Confidence 6899999888653
No 236
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=23.99 E-value=18 Score=21.28 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=9.7
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 11 ~~C~~C~k~f~~ 22 (42)
T 2el5_A 11 YECSECGKAFNR 22 (42)
T ss_dssp EECSSSCCEESS
T ss_pred ccCCCcChhhCC
Confidence 679999888864
No 237
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.39 E-value=30 Score=20.66 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=9.7
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytr_A 13 YKCNECGKAFSQ 24 (46)
T ss_dssp TCCTTTCCCCSS
T ss_pred cCCCCCCCccCC
Confidence 679999888864
No 238
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.35 E-value=26 Score=20.95 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=9.6
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eop_A 13 HECRECGKSFSF 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred eeCCCCCchhCC
Confidence 679999888864
No 239
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.18 E-value=27 Score=21.10 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=10.3
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (46)
T 2eon_A 13 YKCQVCGKAFRVS 25 (46)
T ss_dssp CBCSSSCCBCSSH
T ss_pred cCCCCCCcccCcH
Confidence 6899999888653
No 240
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=23.14 E-value=19 Score=21.09 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=9.7
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2epc_A 12 YLCGQCGKSFTQ 23 (42)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCC
Confidence 679999988864
No 241
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.08 E-value=19 Score=21.16 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=9.7
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2en2_A 12 YKCETCGARFVQ 23 (42)
T ss_dssp EECTTTCCEESS
T ss_pred EeCCCcChhhCC
Confidence 679999988864
No 242
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.03 E-value=27 Score=20.88 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=9.5
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eov_A 13 YKCSDCGKSFTW 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCccChhhCC
Confidence 678899888854
No 243
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.02 E-value=19 Score=21.51 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=10.2
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (44)
T 2yu5_A 13 FKCSKCDRVFTQR 25 (44)
T ss_dssp EECSSSSCEESSS
T ss_pred eECCCCCchhCCH
Confidence 6799999888653
No 244
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.85 E-value=19 Score=21.05 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=9.6
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 11 ~~C~~C~k~f~~ 22 (41)
T 2ept_A 11 YECQECGKSFRQ 22 (41)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCCcCC
Confidence 679999988864
No 245
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.85 E-value=19 Score=21.67 Aligned_cols=12 Identities=17% Similarity=0.503 Sum_probs=9.6
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2emi_A 13 YECSECGKAFIQ 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred CCCCCCCcccCC
Confidence 679999888864
No 246
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=22.61 E-value=28 Score=20.95 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=9.6
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2emk_A 13 YECKECGKAFSQ 24 (46)
T ss_dssp CBCSSSCCBCSC
T ss_pred eECCCCCchhCC
Confidence 678999888864
No 247
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.61 E-value=16 Score=25.88 Aligned_cols=9 Identities=22% Similarity=0.253 Sum_probs=4.5
Q ss_pred CCcCCCCCC
Q 039647 1 MGSKFPFCE 9 (290)
Q Consensus 1 ~e~~Cp~C~ 9 (290)
|+++||.|.
T Consensus 14 m~VkCp~C~ 22 (63)
T 3j20_W 14 LRVKCIDCG 22 (63)
T ss_dssp EEEECSSSC
T ss_pred EEEECCCCC
Confidence 345555554
No 248
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.50 E-value=66 Score=22.44 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=27.6
Q ss_pred ccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCC
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPS 205 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~ 205 (290)
..|..|.+.+..++.++. .=+..||..|+ .|-.|...|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF-YEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC-CSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE-eCCccccccCC--------eecCCCCccCC
Confidence 579999998874333222 24788998873 48888887763
No 249
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.46 E-value=28 Score=20.94 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=9.6
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2en9_A 13 FKCNECKKTFTQ 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred EECCccCcccCC
Confidence 689999888854
No 250
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.43 E-value=33 Score=20.51 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=9.7
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2epz_A 13 FDCIDCGKAFSD 24 (46)
T ss_dssp BCCTTTCCCBSS
T ss_pred eECCCCCceeCC
Confidence 679999888864
No 251
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.25 E-value=29 Score=20.84 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=9.5
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2ytn_A 13 YKCNECGKVFTQ 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCCeeCC
Confidence 678889888864
No 252
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=22.24 E-value=34 Score=20.53 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=9.6
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ely_A 13 FKCVECGKGFSR 24 (46)
T ss_dssp BCCSSSCCCBSS
T ss_pred cccCccCcccCC
Confidence 689999888864
No 253
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.12 E-value=29 Score=20.87 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=10.0
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (46)
T 2ytq_A 13 YGCSECGKAFSSK 25 (46)
T ss_dssp CBCSSSCCBCSCH
T ss_pred cCCCccChhhCCh
Confidence 6799998888643
No 254
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.06 E-value=21 Score=21.54 Aligned_cols=12 Identities=17% Similarity=0.158 Sum_probs=9.8
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2en3_A 13 FQCKECGMNFSW 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eeCcccChhhCC
Confidence 679999988864
No 255
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.01 E-value=19 Score=25.82 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=13.5
Q ss_pred HHHHhcCCCCCcccccCCCC
Q 039647 187 MPWLEFHSSCPICRYQLPSD 206 (290)
Q Consensus 187 ~~Wl~~~~~CP~CR~~l~~~ 206 (290)
++||...-.||+|+.++...
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 44566667899998877543
No 256
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.01 E-value=56 Score=22.58 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=25.5
Q ss_pred ccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
..|..|...+.. .. +..-+..||.+| -.|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~~--v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RV--LEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CC--BCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-ee--EEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 478888887753 22 234678889887 34778877775
No 257
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.99 E-value=26 Score=20.97 Aligned_cols=12 Identities=17% Similarity=0.312 Sum_probs=9.4
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eq4_A 13 YNCKECGKSFSR 24 (46)
T ss_dssp CCBTTTTBCCSC
T ss_pred eECCCCCCccCc
Confidence 678888888864
No 258
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.97 E-value=40 Score=27.35 Aligned_cols=39 Identities=21% Similarity=0.459 Sum_probs=21.7
Q ss_pred ccccccccccccCCcceecCCCCcccHhhHHHHHhcCCCCCcccccCC
Q 039647 157 LQCAVWLEEFVMGNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLP 204 (290)
Q Consensus 157 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~ 204 (290)
..|..|.+.+...+.+ ...-++.||..|. .|-.|...|.
T Consensus 66 ~~C~~C~~~I~~~~~v-~~a~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVV-RRAQDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEE-EEETTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCCcEE-EEcCCceEeeCCC--------cCCCCCCCCC
Confidence 3567776665543322 1124666777664 5667766664
No 259
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.87 E-value=21 Score=21.45 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=10.1
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (46)
T 2yts_A 13 YICNECGKSFIQK 25 (46)
T ss_dssp EECSSSCCEESSH
T ss_pred EECCCCChhhCCh
Confidence 6799998888653
No 260
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.53 E-value=21 Score=21.10 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=9.6
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2eof_A 13 YECNECQKAFNT 24 (44)
T ss_dssp EECTTTCCEESC
T ss_pred eECCCCCcccCC
Confidence 679999888864
No 261
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.36 E-value=31 Score=20.75 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=9.4
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2elz_A 13 YKCEDCGKGYNR 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred eeCcccCchhCC
Confidence 678889888854
No 262
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.31 E-value=22 Score=21.20 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=9.8
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2emb_A 13 YECSKCQATFNL 24 (44)
T ss_dssp EECTTTCCEESC
T ss_pred eECCCCCCccCC
Confidence 679999988864
No 263
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.25 E-value=22 Score=21.35 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=9.6
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytf_A 13 FECSECQKAFNT 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred cCCCCCCcccCC
Confidence 679999888864
No 264
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=21.09 E-value=22 Score=22.12 Aligned_cols=12 Identities=8% Similarity=0.315 Sum_probs=9.6
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 8 ~~C~~C~k~F~~ 19 (48)
T 3iuf_A 8 YACDICGKRYKN 19 (48)
T ss_dssp EECTTTCCEESS
T ss_pred EECCCcCcccCC
Confidence 679999988854
No 265
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=21.00 E-value=14 Score=26.57 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=12.3
Q ss_pred CcCCCCCCCCceeec
Q 039647 2 GSKFPFCETGFVEQM 16 (290)
Q Consensus 2 e~~Cp~C~~GFvEe~ 16 (290)
..+||+|+--|+.+=
T Consensus 40 ~~~CpYCg~~f~l~~ 54 (67)
T 2jrr_A 40 WVECPYCDCKYVLKG 54 (67)
T ss_dssp EEEETTTTEEEEETT
T ss_pred eEECCCCCCEEEECC
Confidence 368999999998763
No 266
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.90 E-value=22 Score=21.29 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=10.1
Q ss_pred cCCCCCCCCceee
Q 039647 3 SKFPFCETGFVEQ 15 (290)
Q Consensus 3 ~~Cp~C~~GFvEe 15 (290)
++|+.|+..|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (46)
T 2yrj_A 13 YRCGECGKAFAQK 25 (46)
T ss_dssp EECSSSCCEESSH
T ss_pred eECCCCCCccCCH
Confidence 6799999888653
No 267
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.84 E-value=67 Score=24.54 Aligned_cols=50 Identities=6% Similarity=-0.032 Sum_probs=33.8
Q ss_pred cccccccccccc-CCcceecCCCCcccHhhHHHHHhcCCCCCcccccCCCCC
Q 039647 157 LQCAVWLEEFVM-GNEAKQMPYKHKFHGECLMPWLEFHSSCPICRYQLPSDN 207 (290)
Q Consensus 157 ~~C~ICle~f~~-~~~~~~lpC~H~FH~~CI~~Wl~~~~~CP~CR~~l~~~~ 207 (290)
..|..|...+.. +.. -...=+..||..|...-+..+..|-.|...|....
T Consensus 33 F~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 688888887752 111 12234667889998876666558999988887543
No 268
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.68 E-value=23 Score=21.38 Aligned_cols=12 Identities=17% Similarity=0.384 Sum_probs=9.6
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2ytp_A 13 YECSECGKAFAR 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eECCcCCcccCC
Confidence 679999888864
No 269
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.50 E-value=23 Score=21.35 Aligned_cols=12 Identities=17% Similarity=0.238 Sum_probs=9.3
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2em4_A 13 YECIECGKAFKT 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred cCCCCCCCccCC
Confidence 678889888854
No 270
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.50 E-value=23 Score=21.35 Aligned_cols=12 Identities=33% Similarity=0.348 Sum_probs=9.8
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eoy_A 13 FKCNKCEKTFSC 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred EECcCCCCcCCC
Confidence 679999988864
No 271
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.49 E-value=23 Score=21.21 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=9.4
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eow_A 13 YKCNECGKAFRA 24 (46)
T ss_dssp EECTTSCCEESS
T ss_pred eeccccCChhcC
Confidence 678999888864
No 272
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.42 E-value=38 Score=20.30 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=9.2
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytt_A 13 YQCSECGKSFSG 24 (46)
T ss_dssp TCCSSSCCCCSS
T ss_pred eeCCCCCcccCC
Confidence 678888888754
No 273
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.40 E-value=23 Score=21.22 Aligned_cols=12 Identities=17% Similarity=0.431 Sum_probs=9.3
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eor_A 13 YNCEECGKAFIH 24 (46)
T ss_dssp EECTTTCCEESS
T ss_pred ccCCCCCCCcCC
Confidence 678999888853
No 274
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.40 E-value=32 Score=25.48 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=8.3
Q ss_pred ccccccccccccC
Q 039647 157 LQCAVWLEEFVMG 169 (290)
Q Consensus 157 ~~C~ICle~f~~~ 169 (290)
..|++|..++...
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 4677777766543
No 275
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=20.18 E-value=37 Score=23.92 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=28.4
Q ss_pred cccccccccccccCCcceec-CCCCcccHhhHHHHHh---cCCCCCcccc
Q 039647 156 DLQCAVWLEEFVMGNEAKQM-PYKHKFHGECLMPWLE---FHSSCPICRY 201 (290)
Q Consensus 156 ~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~Wl~---~~~~CP~CR~ 201 (290)
...| ||...+. +...+.. .|..-||..|+.--.. ..-.||.|+.
T Consensus 19 ~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 4677 9998765 3334443 3999999999864221 2346888854
No 276
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.18 E-value=24 Score=21.30 Aligned_cols=12 Identities=25% Similarity=0.420 Sum_probs=9.5
Q ss_pred cCCCCCCCCcee
Q 039647 3 SKFPFCETGFVE 14 (290)
Q Consensus 3 ~~Cp~C~~GFvE 14 (290)
++|+.|+..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2yto_A 13 YKCSDCGKAFTR 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred EECcccCCccCC
Confidence 679999888864
Done!