Query 039648
Match_columns 254
No_of_seqs 125 out of 1337
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 11:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.8E-39 6.1E-44 267.5 25.3 209 10-230 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 4E-16 8.6E-21 122.4 17.4 138 111-249 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 3.5E-16 7.6E-21 117.9 13.5 102 111-212 1-118 (129)
4 PHA02713 hypothetical protein; 98.7 2.7E-06 5.9E-11 79.2 20.4 192 26-239 321-544 (557)
5 PHA03098 kelch-like protein; P 98.6 6E-06 1.3E-10 76.6 19.2 190 26-236 312-519 (534)
6 PHA02713 hypothetical protein; 98.5 2E-05 4.4E-10 73.4 20.2 189 27-235 274-496 (557)
7 PLN02153 epithiospecifier prot 98.4 5.5E-05 1.2E-09 66.2 19.8 196 26-236 51-292 (341)
8 PLN02193 nitrile-specifier pro 98.4 0.00012 2.5E-09 67.0 22.1 197 26-237 194-419 (470)
9 PHA02790 Kelch-like protein; P 98.4 8.5E-05 1.8E-09 68.1 19.9 180 27-235 289-477 (480)
10 KOG4441 Proteins containing BT 98.3 6.9E-05 1.5E-09 69.9 17.6 189 26-236 350-554 (571)
11 TIGR03548 mutarot_permut cycli 98.3 0.00031 6.8E-09 60.9 20.4 103 89-191 87-204 (323)
12 KOG4441 Proteins containing BT 98.1 0.00033 7.2E-09 65.4 18.6 189 27-236 303-507 (571)
13 PHA03098 kelch-like protein; P 97.9 0.001 2.3E-08 61.7 17.6 150 26-193 359-523 (534)
14 TIGR03547 muta_rot_YjhT mutatr 97.8 0.0088 1.9E-07 52.3 21.1 198 26-235 30-305 (346)
15 PRK14131 N-acetylneuraminic ac 97.7 0.011 2.3E-07 52.6 19.4 215 10-236 34-328 (376)
16 PLN02153 epithiospecifier prot 97.6 0.015 3.2E-07 50.9 19.7 146 90-237 50-234 (341)
17 PHA02790 Kelch-like protein; P 97.6 0.0024 5.3E-08 58.6 15.1 136 89-236 286-431 (480)
18 PLN02193 nitrile-specifier pro 97.5 0.0058 1.3E-07 55.9 15.7 150 26-192 245-421 (470)
19 TIGR03548 mutarot_permut cycli 97.3 0.019 4.1E-07 49.8 16.2 134 101-236 52-202 (323)
20 TIGR03547 muta_rot_YjhT mutatr 96.6 0.16 3.4E-06 44.4 15.8 126 26-168 169-329 (346)
21 KOG1230 Protein containing rep 96.6 0.16 3.4E-06 45.0 15.0 202 26-239 99-351 (521)
22 KOG4693 Uncharacterized conser 96.6 0.079 1.7E-06 44.2 12.5 207 25-240 44-288 (392)
23 PRK14131 N-acetylneuraminic ac 96.6 0.14 3.1E-06 45.4 15.2 144 26-186 190-373 (376)
24 KOG0379 Kelch repeat-containin 95.1 2.6 5.7E-05 38.8 17.2 152 26-192 140-312 (482)
25 KOG0379 Kelch repeat-containin 95.1 2.2 4.7E-05 39.3 16.6 148 91-240 89-261 (482)
26 PLN03215 ascorbic acid mannose 94.2 3.7 8.1E-05 36.4 21.7 126 99-235 189-353 (373)
27 PF07762 DUF1618: Protein of u 93.4 0.76 1.6E-05 34.2 8.4 65 129-193 6-98 (131)
28 KOG1230 Protein containing rep 92.2 2.8 6.1E-05 37.4 11.1 100 91-190 99-224 (521)
29 KOG4693 Uncharacterized conser 91.9 2.9 6.4E-05 35.2 10.3 149 86-235 40-231 (392)
30 COG4257 Vgb Streptogramin lyas 91.3 8.3 0.00018 32.7 14.4 209 13-238 71-315 (353)
31 COG4257 Vgb Streptogramin lyas 87.4 13 0.00028 31.6 10.9 118 9-150 194-318 (353)
32 PF02897 Peptidase_S9_N: Proly 85.9 25 0.00054 31.4 19.9 144 90-236 252-412 (414)
33 KOG0289 mRNA splicing factor [ 85.5 26 0.00056 31.6 12.2 118 89-214 368-495 (506)
34 PF13964 Kelch_6: Kelch motif 85.4 2.2 4.8E-05 25.6 4.3 21 25-45 28-48 (50)
35 PF13418 Kelch_4: Galactose ox 82.3 1.7 3.6E-05 26.0 2.7 19 26-44 30-48 (49)
36 KOG2055 WD40 repeat protein [G 81.7 20 0.00044 32.4 10.1 97 128-233 279-379 (514)
37 COG2706 3-carboxymuconate cycl 79.2 43 0.00093 29.3 13.8 110 129-238 167-286 (346)
38 PF13964 Kelch_6: Kelch motif 79.0 4.5 9.9E-05 24.2 3.9 34 111-144 7-43 (50)
39 smart00564 PQQ beta-propeller 77.9 8.5 0.00019 20.5 4.8 26 205-234 5-30 (33)
40 PF07893 DUF1668: Protein of u 74.7 59 0.0013 28.5 14.0 126 27-167 88-250 (342)
41 PF07646 Kelch_2: Kelch motif; 73.4 7.4 0.00016 23.2 3.8 23 86-108 26-48 (49)
42 PF01011 PQQ: PQQ enzyme repea 72.1 11 0.00025 21.1 4.1 24 208-235 2-25 (38)
43 KOG4152 Host cell transcriptio 71.1 16 0.00035 33.7 6.7 68 25-108 57-126 (830)
44 smart00612 Kelch Kelch domain. 70.6 5.1 0.00011 23.1 2.6 20 26-45 16-35 (47)
45 PF02191 OLF: Olfactomedin-lik 70.5 63 0.0014 27.0 13.3 120 110-238 73-213 (250)
46 PF10282 Lactonase: Lactonase, 69.2 77 0.0017 27.6 13.7 106 129-237 166-286 (345)
47 PF13360 PQQ_2: PQQ-like domai 66.6 65 0.0014 25.7 15.4 130 91-235 4-147 (238)
48 PF10282 Lactonase: Lactonase, 64.8 95 0.0021 27.0 18.8 141 90-236 166-332 (345)
49 PF13415 Kelch_3: Galactose ox 63.3 7.4 0.00016 23.2 2.2 20 26-45 20-39 (49)
50 smart00284 OLF Olfactomedin-li 56.7 1.2E+02 0.0026 25.5 12.9 120 110-238 78-218 (255)
51 TIGR01640 F_box_assoc_1 F-box 55.6 1.1E+02 0.0024 24.7 11.9 66 171-238 69-137 (230)
52 PF08268 FBA_3: F-box associat 54.3 41 0.0009 24.6 5.4 47 205-251 4-58 (129)
53 cd01206 Homer Homer type EVH1 52.8 33 0.00072 24.7 4.3 39 26-76 12-51 (111)
54 KOG2321 WD40 repeat protein [G 52.2 1.6E+02 0.0035 27.8 9.5 97 130-232 156-262 (703)
55 PF08450 SGL: SMP-30/Gluconola 50.6 1.4E+02 0.0029 24.3 21.9 194 11-239 8-224 (246)
56 KOG1963 WD40 repeat protein [G 50.1 1.2E+02 0.0026 29.7 8.8 60 169-233 476-544 (792)
57 KOG0279 G protein beta subunit 48.5 1.2E+02 0.0026 25.9 7.6 69 154-231 196-265 (315)
58 cd01207 Ena-Vasp Enabled-VASP- 45.5 57 0.0012 23.6 4.7 41 27-76 11-51 (111)
59 TIGR03866 PQQ_ABC_repeats PQQ- 43.9 1.8E+02 0.0038 23.7 9.7 104 130-239 180-291 (300)
60 PF13570 PQQ_3: PQQ-like domai 43.6 47 0.001 18.6 3.4 21 205-229 20-40 (40)
61 COG3386 Gluconolactonase [Carb 42.6 2.2E+02 0.0049 24.6 11.3 116 111-235 30-158 (307)
62 PF15525 DUF4652: Domain of un 42.3 1.8E+02 0.0039 23.3 7.8 64 172-236 86-156 (200)
63 PLN02772 guanylate kinase 41.5 1.8E+02 0.0039 26.2 8.2 71 111-181 30-107 (398)
64 PF07893 DUF1668: Protein of u 41.1 2.5E+02 0.0054 24.6 13.0 99 130-235 87-214 (342)
65 PF01344 Kelch_1: Kelch motif; 40.3 72 0.0016 18.2 6.8 40 153-192 4-47 (47)
66 KOG0292 Vesicle coat complex C 40.0 1.1E+02 0.0023 30.7 6.8 69 158-230 213-282 (1202)
67 KOG2106 Uncharacterized conser 39.3 3.3E+02 0.007 25.5 11.4 23 128-150 307-329 (626)
68 KOG1310 WD40 repeat protein [G 38.0 1.4E+02 0.003 28.2 6.9 54 12-74 59-112 (758)
69 PF06433 Me-amine-dh_H: Methyl 36.4 3E+02 0.0065 24.2 9.1 115 110-234 188-326 (342)
70 PF08450 SGL: SMP-30/Gluconola 34.3 2.5E+02 0.0054 22.7 14.5 109 116-235 13-129 (246)
71 PF03088 Str_synth: Strictosid 33.9 43 0.00094 23.1 2.5 17 219-235 36-52 (89)
72 PF06058 DCP1: Dcp1-like decap 33.8 97 0.0021 22.8 4.5 22 219-240 28-49 (122)
73 PRK11138 outer membrane biogen 33.3 3.4E+02 0.0074 23.9 12.4 107 110-235 64-185 (394)
74 PRK11028 6-phosphogluconolacto 32.6 3.1E+02 0.0068 23.3 9.7 69 164-235 4-73 (330)
75 KOG0296 Angio-associated migra 32.3 37 0.00081 29.9 2.4 34 3-38 192-225 (399)
76 PF12458 DUF3686: ATPase invol 31.6 65 0.0014 29.1 3.8 134 14-180 238-384 (448)
77 KOG0291 WD40-repeat-containing 29.9 5.5E+02 0.012 25.3 9.9 100 130-239 415-521 (893)
78 KOG0321 WD40 repeat-containing 29.0 3.8E+02 0.0082 25.8 8.3 53 129-181 74-131 (720)
79 PTZ00420 coronin; Provisional 28.6 5.2E+02 0.011 24.6 10.1 61 172-235 240-300 (568)
80 PF00568 WH1: WH1 domain; Int 28.0 1.6E+02 0.0034 21.0 4.8 38 26-76 17-55 (111)
81 PF03022 MRJP: Major royal jel 27.4 3.9E+02 0.0084 22.7 8.9 62 129-190 34-106 (287)
82 KOG0291 WD40-repeat-containing 27.1 6.2E+02 0.013 25.0 12.6 112 112-230 252-382 (893)
83 PRK13259 regulatory protein Sp 27.0 68 0.0015 22.5 2.5 32 8-39 35-70 (94)
84 TIGR03300 assembly_YfgL outer 26.9 4.2E+02 0.0092 23.0 14.6 128 91-234 76-214 (377)
85 PF13018 ESPR: Extended Signal 24.8 40 0.00087 17.2 0.8 15 28-42 7-21 (24)
86 KOG0649 WD40 repeat protein [G 24.6 3.9E+02 0.0085 22.6 6.8 84 146-235 56-151 (325)
87 TIGR02658 TTQ_MADH_Hv methylam 23.3 4E+02 0.0086 23.6 7.2 111 116-235 207-338 (352)
88 PRK04792 tolB translocation pr 22.9 5.8E+02 0.012 23.2 19.2 184 24-236 241-433 (448)
89 PTZ00420 coronin; Provisional 22.7 6.2E+02 0.013 24.1 8.8 57 170-233 146-202 (568)
90 KOG0271 Notchless-like WD40 re 22.7 2.6E+02 0.0056 25.1 5.8 53 165-232 130-191 (480)
91 KOG0647 mRNA export protein (c 22.6 5.2E+02 0.011 22.5 8.8 64 169-240 47-114 (347)
92 PF14339 DUF4394: Domain of un 22.3 3E+02 0.0065 22.9 5.9 55 12-74 36-92 (236)
93 PF07250 Glyoxal_oxid_N: Glyox 21.2 4.7E+02 0.01 21.8 6.9 38 7-46 173-211 (243)
94 PRK11028 6-phosphogluconolacto 21.1 5.2E+02 0.011 21.9 9.3 104 129-235 197-313 (330)
95 PF13360 PQQ_2: PQQ-like domai 20.7 4.3E+02 0.0093 20.8 14.8 94 130-235 133-237 (238)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=2.8e-39 Score=267.47 Aligned_cols=209 Identities=26% Similarity=0.428 Sum_probs=161.2
Q ss_pred EeccCceEEEEEcCCccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCc
Q 039648 10 VGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKV 89 (254)
Q Consensus 10 ~~scnGLlcl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~ 89 (254)
++|||||||+.... +++||||+||+++.||+++..... .....+|||||+.+++||||++..... ....
T Consensus 1 ~~sCnGLlc~~~~~--~~~V~NP~T~~~~~LP~~~~~~~~----~~~~~~~~G~d~~~~~YKVv~~~~~~~-----~~~~ 69 (230)
T TIGR01640 1 VVPCDGLICFSYGK--RLVVWNPSTGQSRWLPTPKSRRSN----KESDTYFLGYDPIEKQYKVLCFSDRSG-----NRNQ 69 (230)
T ss_pred CcccceEEEEecCC--cEEEECCCCCCEEecCCCCCcccc----cccceEEEeecccCCcEEEEEEEeecC-----CCCC
Confidence 48999999998763 469999999999999986542110 112268999999999999999975311 1245
Q ss_pred CeEEEEEccCCceeeccccC-------ceEEEE-EEEEEEEecCCCc-eEEEEEECCCccee-EecCCCCCC---ceeEE
Q 039648 90 PNVQVYGFRTNSWREVHGHQ-------LDRYFK-VCYWLVIADTRDL-KVILSFHMDNEVFE-EIKIPPHVN---YYSSI 156 (254)
Q Consensus 90 ~~~~Vys~~~~~Wr~~~~~p-------~~v~~~-~lyWl~~~~~~~~-~~IvsfD~~~e~~~-~i~~P~~~~---~~~~l 156 (254)
..++||++++++||.++..+ .+|++| ++||++....... ..|++||+++|+|+ .+++|.... ....|
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L 149 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSL 149 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEE
Confidence 68999999999999988541 499999 9999997654223 38999999999999 589987643 34689
Q ss_pred EEeCCeEEEEecC-CCCEEEEEEECC--CcceEEEEEecC--CCcc---eeeEEEEeCCeEEEEeCccccCCEEEEEECC
Q 039648 157 SLYEDSLSIVIPD-AEQCFEIWVMND--NKCWAKHLTLGP--FFNF---RINFGFWKNDAFFIESNSRIYGGCLFLHEHR 228 (254)
Q Consensus 157 ~~~~g~L~~~~~~-~~~~~~IW~l~~--~~~W~~~~~i~~--~~~~---~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~ 228 (254)
++++|+||++... ....++||+|++ +..|+|+++|+. ...+ ..|+++.++|+|++..... +...+++||++
T Consensus 150 ~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~~~~~~~y~~~ 228 (230)
T TIGR01640 150 INYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-NPFYIFYYNVG 228 (230)
T ss_pred EEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-CceEEEEEecc
Confidence 9999999999843 235699999997 557999999984 2222 3588899999999987620 12339999998
Q ss_pred CC
Q 039648 229 TK 230 (254)
Q Consensus 229 t~ 230 (254)
++
T Consensus 229 ~~ 230 (230)
T TIGR01640 229 EN 230 (230)
T ss_pred CC
Confidence 75
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.73 E-value=4e-16 Score=122.39 Aligned_cols=138 Identities=19% Similarity=0.333 Sum_probs=98.2
Q ss_pred eEEEE-EEEEEEEecCCCc-eEEEEEECCCcce-eEecCCCCCC---ceeEEEEe-CCeEEEEec-CCCCEEEEEEECC-
Q 039648 111 DRYFK-VCYWLVIADTRDL-KVILSFHMDNEVF-EEIKIPPHVN---YYSSISLY-EDSLSIVIP-DAEQCFEIWVMND- 181 (254)
Q Consensus 111 ~v~~~-~lyWl~~~~~~~~-~~IvsfD~~~e~~-~~i~~P~~~~---~~~~l~~~-~g~L~~~~~-~~~~~~~IW~l~~- 181 (254)
+|++| ++||++....... ..|++||+++|+| +.+++|.... ....|... +|+||++.. .....++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 68999 9999998765432 3899999999999 8899998764 45677544 789999973 4455799999995
Q ss_pred ---CcceEEEEEecCCCc--ce-----eeEEEEeCCeEEEEeCccccC---CEEEEEECCCCcEEEEEEcC---c-eEEE
Q 039648 182 ---NKCWAKHLTLGPFFN--FR-----INFGFWKNDAFFIESNSRIYG---GCLFLHEHRTKEIKNLQVTN---P-QFVV 244 (254)
Q Consensus 182 ---~~~W~~~~~i~~~~~--~~-----~~~~~~~~g~i~l~~~~~~~~---~~~~~yd~~t~~~~~~~~~~---~-~~~~ 244 (254)
.++|+|.++|+.... .. ..+-+.+++++++........ ..+.+|+ +++.++.+++.. . ..+.
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~~ 159 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSIC 159 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCEE
Confidence 579999999984321 11 122334556666665421111 4577888 778888887732 1 5678
Q ss_pred Eeeec
Q 039648 245 IYKES 249 (254)
Q Consensus 245 ~y~eS 249 (254)
.|+||
T Consensus 160 ~YvpS 164 (164)
T PF07734_consen 160 NYVPS 164 (164)
T ss_pred EECCC
Confidence 99987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.71 E-value=3.5e-16 Score=117.85 Aligned_cols=102 Identities=25% Similarity=0.432 Sum_probs=81.6
Q ss_pred eEEEE-EEEEEEEecCCCceEEEEEECCCcceeEecCCCCC--C-ceeEEEEeCCeEEEEecCC---CCEEEEEEECC--
Q 039648 111 DRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHV--N-YYSSISLYEDSLSIVIPDA---EQCFEIWVMND-- 181 (254)
Q Consensus 111 ~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~--~-~~~~l~~~~g~L~~~~~~~---~~~~~IW~l~~-- 181 (254)
|+++| ++||++.........|+|||+++|+|+.+++|... . ....|.+++|+||++.... ...++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 68999 99999988444567999999999999999999221 1 6789999999999998432 24699999999
Q ss_pred CcceEEEEEecCCC-------cceeeEEEEeCCeEEEE
Q 039648 182 NKCWAKHLTLGPFF-------NFRINFGFWKNDAFFIE 212 (254)
Q Consensus 182 ~~~W~~~~~i~~~~-------~~~~~~~~~~~g~i~l~ 212 (254)
+++|++.+.+-+.. ....++++.++|+|++.
T Consensus 81 k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 81 KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 78999987754431 13567788889998887
No 4
>PHA02713 hypothetical protein; Provisional
Probab=98.71 E-value=2.7e-06 Score=79.17 Aligned_cols=192 Identities=10% Similarity=0.058 Sum_probs=119.8
Q ss_pred cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648 26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV 105 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~ 105 (254)
.+..+||.+++|..+|+.+..+ .......++ =||..++.. + +......+|+|+..++.|+.+
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R--------~~~~~~~~~-----g~IYviGG~--~---~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNR--------CRFSLAVID-----DTIYAIGGQ--N---GTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchh--------hceeEEEEC-----CEEEEECCc--C---CCCCCceEEEEECCCCeEEEC
Confidence 4688999999999999876531 111111222 256665432 1 112344799999999999998
Q ss_pred cccC------ceEEEE-EEEEEEEecCC-------------------CceEEEEEECCCcceeEec-CCCCCCceeEEEE
Q 039648 106 HGHQ------LDRYFK-VCYWLVIADTR-------------------DLKVILSFHMDNEVFEEIK-IPPHVNYYSSISL 158 (254)
Q Consensus 106 ~~~p------~~v~~~-~lyWl~~~~~~-------------------~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~ 158 (254)
..+| ..+.++ .+|=+...... ....+.+||+++++|+.++ +|... ....++.
T Consensus 383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~~ 461 (557)
T PHA02713 383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVVS 461 (557)
T ss_pred CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-ccCcEEE
Confidence 8774 345667 99877532210 1246899999999999873 33322 4566889
Q ss_pred eCCeEEEEecCC-CCE-E-EEEEECC-C-cceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCcEE
Q 039648 159 YEDSLSIVIPDA-EQC-F-EIWVMND-N-KCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIK 233 (254)
Q Consensus 159 ~~g~L~~~~~~~-~~~-~-~IW~l~~-~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~ 233 (254)
++|+|.++++.. ... . .+-..+. . .+|+....|+... ...-+. .-+|.|++.-+.. ....+-.||++|++|.
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r-~~~~~~-~~~~~iyv~Gg~~-~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL-SALHTI-LHDNTIMMLHCYE-SYMLQDTFNVYTYEWN 538 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc-ccceeE-EECCEEEEEeeec-ceeehhhcCccccccc
Confidence 999999998421 111 1 2455554 4 5899987766432 111111 2266777765421 0125779999999999
Q ss_pred EEEEcC
Q 039648 234 NLQVTN 239 (254)
Q Consensus 234 ~~~~~~ 239 (254)
.+.-+.
T Consensus 539 ~~~~~~ 544 (557)
T PHA02713 539 HICHQH 544 (557)
T ss_pred chhhhc
Confidence 774443
No 5
>PHA03098 kelch-like protein; Provisional
Probab=98.60 E-value=6e-06 Score=76.60 Aligned_cols=190 Identities=10% Similarity=0.157 Sum_probs=116.5
Q ss_pred cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648 26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV 105 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~ 105 (254)
+++.+||.|++|..+|+.+.. +. ....+ ..+ =+|..++... +......+++|+..+++|+..
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~--R~----~~~~~--~~~-----~~lyv~GG~~-----~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYP--RK----NPGVT--VFN-----NRIYVIGGIY-----NSISLNTVESWKPGESKWREE 373 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcc--cc----cceEE--EEC-----CEEEEEeCCC-----CCEecceEEEEcCCCCceeeC
Confidence 478999999999999986542 11 11111 112 1355554321 012345689999999999998
Q ss_pred cccC------ceEEEE-EEEEEEEecCC--CceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEecCC-CC--
Q 039648 106 HGHQ------LDRYFK-VCYWLVIADTR--DLKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIPDA-EQ-- 172 (254)
Q Consensus 106 ~~~p------~~v~~~-~lyWl~~~~~~--~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~~~-~~-- 172 (254)
..+| ..+.++ .+|=+...... ....+..||+.+++|+.++ +|... .....+..+|+|.++++.. ..
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-YGGCAIYHDGKIYVIGGISYIDNI 452 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-cCceEEEECCEEEEECCccCCCCC
Confidence 7663 345566 88876542211 1257899999999999874 44332 3345677899999888421 11
Q ss_pred --EEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648 173 --CFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ 236 (254)
Q Consensus 173 --~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~ 236 (254)
.-.+|..+. ...|+++-.++... ....++.. ++.|++..+.. .....+..||+++++|+.+.
T Consensus 453 ~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 453 KVYNIVESYNPVTNKWTELSSLNFPR-INASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred cccceEEEecCCCCceeeCCCCCccc-ccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 123777776 78999875444222 11112222 66676654311 00246899999999998774
No 6
>PHA02713 hypothetical protein; Provisional
Probab=98.52 E-value=2e-05 Score=73.40 Aligned_cols=189 Identities=10% Similarity=0.100 Sum_probs=115.8
Q ss_pred EEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeecc
Q 039648 27 LTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVH 106 (254)
Q Consensus 27 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~ 106 (254)
...+||.|++|..+++.|... ..... ..++ =+|..++..... ......++.|+..++.|+.+.
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r-------~~~~~-a~l~-----~~IYviGG~~~~----~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHI-------INYAS-AIVD-----NEIIIAGGYNFN----NPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred EEEEeCCCCeEEECCCCCccc-------cceEE-EEEC-----CEEEEEcCCCCC----CCccceEEEEECCCCeEeeCC
Confidence 578899999999998776531 01111 1111 255555431100 122457899999999999988
Q ss_pred ccC------ceEEEE-EEEEEEEecCC-CceEEEEEECCCcceeEe-cCCCCCCceeEEEEeCCeEEEEecCCCC-----
Q 039648 107 GHQ------LDRYFK-VCYWLVIADTR-DLKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYEDSLSIVIPDAEQ----- 172 (254)
Q Consensus 107 ~~p------~~v~~~-~lyWl~~~~~~-~~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~g~L~~~~~~~~~----- 172 (254)
.+| ..+.++ .+|=+...... ....+-+||+.+++|..+ ++|... .....+.++|+|.++++....
T Consensus 337 ~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-~~~~~~~~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 337 PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-SSYGMCVLDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-ccccEEEECCEEEEEeCCCccccccc
Confidence 774 345677 99988654321 134689999999999987 344433 345567889999999842110
Q ss_pred ---------------EEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccc---cCCEEEEEECCC-CcE
Q 039648 173 ---------------CFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRI---YGGCLFLHEHRT-KEI 232 (254)
Q Consensus 173 ---------------~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~---~~~~~~~yd~~t-~~~ 232 (254)
.-.+...+. ...|+.+..|+... ....+. .-+|.|++..+... ....+-.||+++ ++|
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW 493 (557)
T ss_pred ccccccccccccccccceEEEECCCCCeEeecCCCCccc-ccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCe
Confidence 123555554 67899876654332 111122 33567766643100 012467999999 899
Q ss_pred EEE
Q 039648 233 KNL 235 (254)
Q Consensus 233 ~~~ 235 (254)
+.+
T Consensus 494 ~~~ 496 (557)
T PHA02713 494 ELI 496 (557)
T ss_pred eEc
Confidence 876
No 7
>PLN02153 epithiospecifier protein
Probab=98.44 E-value=5.5e-05 Score=66.20 Aligned_cols=196 Identities=10% Similarity=0.048 Sum_probs=111.6
Q ss_pred cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648 26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV 105 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~ 105 (254)
+++++||.+++|..+|+.... |+ ..........++ =||+.+..... ......+++|+.+++.|+.+
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~-p~---~~~~~~~~~~~~-----~~iyv~GG~~~-----~~~~~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDV-PR---ISCLGVRMVAVG-----TKLYIFGGRDE-----KREFSDFYSYDTVKNEWTFL 116 (341)
T ss_pred cEEEEECCCCEEEEcCccCCC-CC---CccCceEEEEEC-----CEEEEECCCCC-----CCccCcEEEEECCCCEEEEe
Confidence 579999999999998865321 11 000011111111 25666543211 12234689999999999987
Q ss_pred ccc-----C------ceEEEE-EEEEEEEecCC-------CceEEEEEECCCcceeEecCCCC---CCceeEEEEeCCeE
Q 039648 106 HGH-----Q------LDRYFK-VCYWLVIADTR-------DLKVILSFHMDNEVFEEIKIPPH---VNYYSSISLYEDSL 163 (254)
Q Consensus 106 ~~~-----p------~~v~~~-~lyWl~~~~~~-------~~~~IvsfD~~~e~~~~i~~P~~---~~~~~~l~~~~g~L 163 (254)
..+ | ..+..+ .+|=+...... .-..+.+||+++.+|..++.+.. ......++..+|+|
T Consensus 117 ~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~i 196 (341)
T PLN02153 117 TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKI 196 (341)
T ss_pred ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeE
Confidence 643 2 334555 77765432210 01358899999999998864321 11334567889999
Q ss_pred EEEecCC----------CCEEEEEEECC-CcceEEEEEecCCC--cceeeEEEEeCCeEEEEeCccc-----------cC
Q 039648 164 SIVIPDA----------EQCFEIWVMND-NKCWAKHLTLGPFF--NFRINFGFWKNDAFFIESNSRI-----------YG 219 (254)
Q Consensus 164 ~~~~~~~----------~~~~~IW~l~~-~~~W~~~~~i~~~~--~~~~~~~~~~~g~i~l~~~~~~-----------~~ 219 (254)
.++.... ...-++++++- ..+|+++-.....+ ....... .-++.|++.-.... ..
T Consensus 197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ 275 (341)
T PLN02153 197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLS 275 (341)
T ss_pred EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCcccccccccccc
Confidence 9886311 01124666665 68899986543211 1111112 22455655543100 01
Q ss_pred CEEEEEECCCCcEEEEE
Q 039648 220 GCLFLHEHRTKEIKNLQ 236 (254)
Q Consensus 220 ~~~~~yd~~t~~~~~~~ 236 (254)
..+..||+++++|+.+.
T Consensus 276 n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 276 NEGYALDTETLVWEKLG 292 (341)
T ss_pred ccEEEEEcCccEEEecc
Confidence 26899999999999875
No 8
>PLN02193 nitrile-specifier protein
Probab=98.41 E-value=0.00012 Score=67.00 Aligned_cols=197 Identities=11% Similarity=0.053 Sum_probs=115.2
Q ss_pred cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648 26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV 105 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~ 105 (254)
+++++||.|++|..+|..... |. ..........++ =|+..+..... ......+++|+..++.|+.+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~-P~---~~~~~~~~v~~~-----~~lYvfGG~~~-----~~~~ndv~~yD~~t~~W~~l 259 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDV-PH---LSCLGVRMVSIG-----STLYVFGGRDA-----SRQYNGFYSFDTTTNEWKLL 259 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCC-CC---CcccceEEEEEC-----CEEEEECCCCC-----CCCCccEEEEECCCCEEEEc
Confidence 479999999999988753211 11 000111111222 14444432111 12234689999999999998
Q ss_pred ccc---C------ceEEEE-EEEEEEEecC-CCceEEEEEECCCcceeEecCCCCCC---ceeEEEEeCCeEEEEec-CC
Q 039648 106 HGH---Q------LDRYFK-VCYWLVIADT-RDLKVILSFHMDNEVFEEIKIPPHVN---YYSSISLYEDSLSIVIP-DA 170 (254)
Q Consensus 106 ~~~---p------~~v~~~-~lyWl~~~~~-~~~~~IvsfD~~~e~~~~i~~P~~~~---~~~~l~~~~g~L~~~~~-~~ 170 (254)
..+ | ..+..+ .+|-+..... .....+.+||+.+.+|..++.|.... ....++..+|+|.++.. ..
T Consensus 260 ~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g 339 (470)
T PLN02193 260 TPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG 339 (470)
T ss_pred CcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC
Confidence 654 3 234455 7776643221 11246889999999999886543221 34566778999998874 22
Q ss_pred CCEEEEEEECC-CcceEEEEEecCCC--cceeeEEEEeCCeEEEEeCccc-----------cCCEEEEEECCCCcEEEEE
Q 039648 171 EQCFEIWVMND-NKCWAKHLTLGPFF--NFRINFGFWKNDAFFIESNSRI-----------YGGCLFLHEHRTKEIKNLQ 236 (254)
Q Consensus 171 ~~~~~IW~l~~-~~~W~~~~~i~~~~--~~~~~~~~~~~g~i~l~~~~~~-----------~~~~~~~yd~~t~~~~~~~ 236 (254)
...-++|+++- ..+|+++..+...+ ...... +.-++.|++.-.... ....+..||+.|++|+.+.
T Consensus 340 ~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 340 CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred CccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence 22356788776 68899986653221 111122 223456665543110 0124899999999999885
Q ss_pred E
Q 039648 237 V 237 (254)
Q Consensus 237 ~ 237 (254)
.
T Consensus 419 ~ 419 (470)
T PLN02193 419 K 419 (470)
T ss_pred c
Confidence 3
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=98.36 E-value=8.5e-05 Score=68.08 Aligned_cols=180 Identities=11% Similarity=0.021 Sum_probs=111.8
Q ss_pred EEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeecc
Q 039648 27 LTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVH 106 (254)
Q Consensus 27 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~ 106 (254)
...+||.+++|..+|+.+..+ .... +...| =+|..++.. + ....++.|+..+++|..+.
T Consensus 289 v~~Ydp~~~~W~~~~~m~~~r------~~~~--~v~~~-----~~iYviGG~--~------~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 289 AIAVNYISNNWIPIPPMNSPR------LYAS--GVPAN-----NKLYVVGGL--P------NPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred EEEEECCCCEEEECCCCCchh------hcce--EEEEC-----CEEEEECCc--C------CCCceEEEECCCCeEEECC
Confidence 567899999999999876531 1111 11122 255555431 1 1245799999999999988
Q ss_pred ccC------ceEEEE-EEEEEEEecCCCceEEEEEECCCcceeEecCCCCCCceeEEEEeCCeEEEEecCCCCEEEEEEE
Q 039648 107 GHQ------LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVM 179 (254)
Q Consensus 107 ~~p------~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~~~~~~l~~~~g~L~~~~~~~~~~~~IW~l 179 (254)
.+| ..+.++ .+|=+..... ....+.+||.++++|+.++.++........+.++|+|.++++. .+++-.
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~----~e~ydp 422 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN----AEFYCE 422 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc----eEEecC
Confidence 774 355667 9997754322 2246788999999999874333222345667899999998842 233322
Q ss_pred CCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEE
Q 039648 180 NDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNL 235 (254)
Q Consensus 180 ~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~ 235 (254)
+ ...|+....++... ....+. .-+|.|++.-+.. ..-..+-.||+++++|...
T Consensus 423 ~-~~~W~~~~~m~~~r-~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 423 S-SNTWTLIDDPIYPR-DNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred C-CCcEeEcCCCCCCc-cccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 3 58899876554322 111122 2366676664311 0014578999999999865
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.28 E-value=6.9e-05 Score=69.92 Aligned_cols=189 Identities=11% Similarity=0.075 Sum_probs=120.1
Q ss_pred cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648 26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV 105 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~ 105 (254)
....+||.|.+|..+|+....+ ..+|.+. -..+|..+.... +...-..+|.|+-.++.|..+
T Consensus 350 ~ve~YD~~~~~W~~~a~M~~~R---------~~~~v~~----l~g~iYavGG~d-----g~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 350 SVERYDPRTNQWTPVAPMNTKR---------SDFGVAV----LDGKLYAVGGFD-----GEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred eEEEecCCCCceeccCCccCcc---------ccceeEE----ECCEEEEEeccc-----cccccccEEEecCCCCccccc
Confidence 4688999999999999886642 1122211 124555554321 123455899999999999999
Q ss_pred cccC------ceEEEE-EEEEEEEecCCC--ceEEEEEECCCcceeEe-cCCCCCCceeEEEEeCCeEEEEecC-CCCEE
Q 039648 106 HGHQ------LDRYFK-VCYWLVIADTRD--LKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYEDSLSIVIPD-AEQCF 174 (254)
Q Consensus 106 ~~~p------~~v~~~-~lyWl~~~~~~~--~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~g~L~~~~~~-~~~~~ 174 (254)
..++ ..+.++ .+|=+...+... -..+-+||..+++|+.+ +++... ....++.++|.|.++++. ....+
T Consensus 412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-~~~g~a~~~~~iYvvGG~~~~~~~ 490 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-SGFGVAVLNGKIYVVGGFDGTSAL 490 (571)
T ss_pred CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc-ccceEEEECCEEEEECCccCCCcc
Confidence 8772 344666 888776543322 36899999999999987 344333 556789999999999942 21111
Q ss_pred -EEEEECC-CcceEEEEEecCCCcceeeEEE-EeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648 175 -EIWVMND-NKCWAKHLTLGPFFNFRINFGF-WKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ 236 (254)
Q Consensus 175 -~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~-~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~ 236 (254)
.|=..+. ...|+.+..|.... ...++ .-++.+++.-+.. ..-..+-.||+++++|+...
T Consensus 491 ~~VE~ydp~~~~W~~v~~m~~~r---s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 491 SSVERYDPETNQWTMVAPMTSPR---SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred ceEEEEcCCCCceeEcccCcccc---ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence 1333333 68899985555332 11222 2245555543311 12356889999999999763
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.26 E-value=0.00031 Score=60.93 Aligned_cols=103 Identities=9% Similarity=0.044 Sum_probs=69.0
Q ss_pred cCeEEEEEccCCce----eeccccC------ceEEEE-EEEEEEEecC-CCceEEEEEECCCcceeEec-CCCCCCceeE
Q 039648 89 VPNVQVYGFRTNSW----REVHGHQ------LDRYFK-VCYWLVIADT-RDLKVILSFHMDNEVFEEIK-IPPHVNYYSS 155 (254)
Q Consensus 89 ~~~~~Vys~~~~~W----r~~~~~p------~~v~~~-~lyWl~~~~~-~~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~ 155 (254)
...++.|+..++.| +.+..+| ..+.++ .+|=+..... .....+.+||+++++|+.++ +|........
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~ 166 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPV 166 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcce
Confidence 34688899998887 5665553 345667 8887754321 12357899999999999984 5642223445
Q ss_pred EEEeCCeEEEEecCC-CCEEEEEEECC-CcceEEEEEe
Q 039648 156 ISLYEDSLSIVIPDA-EQCFEIWVMND-NKCWAKHLTL 191 (254)
Q Consensus 156 l~~~~g~L~~~~~~~-~~~~~IW~l~~-~~~W~~~~~i 191 (254)
.+..+++|.++.... ....++|+.+- ..+|+++..+
T Consensus 167 ~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~ 204 (323)
T TIGR03548 167 CVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADP 204 (323)
T ss_pred EEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCC
Confidence 578899999998422 22346777775 6789987654
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.13 E-value=0.00033 Score=65.43 Aligned_cols=189 Identities=13% Similarity=0.121 Sum_probs=121.2
Q ss_pred EEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeecc
Q 039648 27 LTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREVH 106 (254)
Q Consensus 27 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~~ 106 (254)
....||.+++|..+.+.+..+. ..|.+.-. =+|..++.... +......+++|+..++.|..+.
T Consensus 303 ve~yd~~~~~w~~~a~m~~~r~---------~~~~~~~~----~~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~a 365 (571)
T KOG4441|consen 303 VECYDPKTNEWSSLAPMPSPRC---------RVGVAVLN----GKLYVVGGYDS----GSDRLSSVERYDPRTNQWTPVA 365 (571)
T ss_pred eEEecCCcCcEeecCCCCcccc---------cccEEEEC----CEEEEEccccC----CCcccceEEEecCCCCceeccC
Confidence 4688999999999988875421 12222211 15555543210 1245568999999999999988
Q ss_pred ccC------ceEEEE-EEEEEEEecC-CCceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEec-CCCC----
Q 039648 107 GHQ------LDRYFK-VCYWLVIADT-RDLKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIP-DAEQ---- 172 (254)
Q Consensus 107 ~~p------~~v~~~-~lyWl~~~~~-~~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~-~~~~---- 172 (254)
.++ .-+.++ .+|=+...+. ..-..|-.+|.++++|.... ++... .....++++|+|+++++ ....
T Consensus 366 ~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r-~~~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 366 PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR-SGHGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce-eeeEEEEECCEEEEEcCcCCCccccc
Confidence 772 344666 8888765442 22357999999999999884 54422 56778999999999994 2122
Q ss_pred EEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc--ccCCEEEEEECCCCcEEEEE
Q 039648 173 CFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR--IYGGCLFLHEHRTKEIKNLQ 236 (254)
Q Consensus 173 ~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~--~~~~~~~~yd~~t~~~~~~~ 236 (254)
.++..--. ..+|+.+..|...... ..+++. +|.|+...+.. ..-..+-.||+++++|..+.
T Consensus 445 sve~YDP~-t~~W~~~~~M~~~R~~-~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 445 SVECYDPE-TNTWTLIAPMNTRRSG-FGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred eEEEEcCC-CCceeecCCccccccc-ceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 22222222 6899998777654421 123333 45566554421 01234788999999999884
No 13
>PHA03098 kelch-like protein; Provisional
Probab=97.91 E-value=0.001 Score=61.70 Aligned_cols=150 Identities=14% Similarity=0.253 Sum_probs=94.5
Q ss_pred cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648 26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV 105 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~ 105 (254)
.+.++||.|++|..+|+.+..+ .... +..++ =+|..++..... ......+++|+..+++|+.+
T Consensus 359 ~v~~yd~~~~~W~~~~~lp~~r-------~~~~-~~~~~-----~~iYv~GG~~~~----~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 359 TVESWKPGESKWREEPPLIFPR-------YNPC-VVNVN-----NLIYVIGGISKN----DELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred eEEEEcCCCCceeeCCCcCcCC-------ccce-EEEEC-----CEEEEECCcCCC----CcccceEEEEeCCCCeeeec
Confidence 4688999999999998776531 0111 11222 145555431111 12245789999999999998
Q ss_pred cccC------ceEEEE-EEEEEEEecCCC----ceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEecCC--C
Q 039648 106 HGHQ------LDRYFK-VCYWLVIADTRD----LKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIPDA--E 171 (254)
Q Consensus 106 ~~~p------~~v~~~-~lyWl~~~~~~~----~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~~~--~ 171 (254)
..+| ..+..+ .+|=+....... ...+.+||+++++|+.++ +|... ....+...+|+|.++++.. .
T Consensus 422 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~ 500 (534)
T PHA03098 422 SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIFNNKIYVVGGDKYEY 500 (534)
T ss_pred CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEECCEEEEEcCCcCCc
Confidence 7664 345667 888665322111 135899999999999884 33222 3445677899999988421 1
Q ss_pred CEEEEEEECC-CcceEEEEEecC
Q 039648 172 QCFEIWVMND-NKCWAKHLTLGP 193 (254)
Q Consensus 172 ~~~~IW~l~~-~~~W~~~~~i~~ 193 (254)
..-.||+.+- ...|+.....|+
T Consensus 501 ~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 501 YINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred ccceeEEEeCCCCEEEecCCCcc
Confidence 1235777765 688998876554
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.82 E-value=0.0088 Score=52.35 Aligned_cols=198 Identities=12% Similarity=0.111 Sum_probs=112.0
Q ss_pred cEEEEc--CcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeecccccc-CCCcCeEEEEEccCCce
Q 039648 26 RLTIWN--PATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKR-YGKVPNVQVYGFRTNSW 102 (254)
Q Consensus 26 ~~~V~N--P~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~-~~~~~~~~Vys~~~~~W 102 (254)
++++.+ |.+++|..+|+.+.. ++ . .. .....| =||..+.......... ......++.|+..+++|
T Consensus 30 ~~~~~d~~~~~~~W~~l~~~p~~-~R----~-~~-~~~~~~-----~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W 97 (346)
T TIGR03547 30 SWYKLDLKKPSKGWQKIADFPGG-PR----N-QA-VAAAID-----GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97 (346)
T ss_pred eeEEEECCCCCCCceECCCCCCC-Cc----c-cc-eEEEEC-----CEEEEEeCCCCCCCCCcceecccEEEEECCCCEE
Confidence 457777 477889999987632 11 0 11 111122 2566554321100000 01234689999999999
Q ss_pred eecccc-C-----c-eE-EEE-EEEEEEEecCC-----------------------------------CceEEEEEECCC
Q 039648 103 REVHGH-Q-----L-DR-YFK-VCYWLVIADTR-----------------------------------DLKVILSFHMDN 138 (254)
Q Consensus 103 r~~~~~-p-----~-~v-~~~-~lyWl~~~~~~-----------------------------------~~~~IvsfD~~~ 138 (254)
+.+..+ | . .+ .++ .+|=+...... ....+.+||+.+
T Consensus 98 ~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t 177 (346)
T TIGR03547 98 QKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPST 177 (346)
T ss_pred ecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCC
Confidence 998643 3 1 22 457 89876432110 014699999999
Q ss_pred cceeEe-cCCCCCCceeEEEEeCCeEEEEecC---CCCEEEEEEEC--C-CcceEEEEEecCCCc-----ceeeEEEEeC
Q 039648 139 EVFEEI-KIPPHVNYYSSISLYEDSLSIVIPD---AEQCFEIWVMN--D-NKCWAKHLTLGPFFN-----FRINFGFWKN 206 (254)
Q Consensus 139 e~~~~i-~~P~~~~~~~~l~~~~g~L~~~~~~---~~~~~~IW~l~--~-~~~W~~~~~i~~~~~-----~~~~~~~~~~ 206 (254)
++|+.+ ++|........++..+|+|.++... .....++|..+ . ...|+++..|+.... ......+.-+
T Consensus 178 ~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~ 257 (346)
T TIGR03547 178 NQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISN 257 (346)
T ss_pred CceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEEC
Confidence 999998 4453221345677889999999842 12334566544 2 568998877653210 1111122346
Q ss_pred CeEEEEeCccc--------------c-----CCEEEEEECCCCcEEEE
Q 039648 207 DAFFIESNSRI--------------Y-----GGCLFLHEHRTKEIKNL 235 (254)
Q Consensus 207 g~i~l~~~~~~--------------~-----~~~~~~yd~~t~~~~~~ 235 (254)
|.|++.-.... . -..+-.||+++++|+.+
T Consensus 258 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 305 (346)
T TIGR03547 258 GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV 305 (346)
T ss_pred CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc
Confidence 67766543100 0 01466999999999876
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.67 E-value=0.011 Score=52.59 Aligned_cols=215 Identities=11% Similarity=0.079 Sum_probs=117.7
Q ss_pred EeccCceEEEEEc-CCccEEEEcCc--ccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeecccccc-
Q 039648 10 VGYHDGLFCIMQS-STNRLTIWNPA--TREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKR- 85 (254)
Q Consensus 10 ~~scnGLlcl~~~-~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~- 85 (254)
....++-|.+... ....+++.++. +++|..+|+.+.. ++ .....+ ..+ =+|..+..........
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r----~~~~~v--~~~-----~~IYV~GG~~~~~~~~~ 101 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PR----EQAVAA--FID-----GKLYVFGGIGKTNSEGS 101 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-Cc----ccceEE--EEC-----CEEEEEcCCCCCCCCCc
Confidence 3455666554332 22335777765 5789999876432 11 001111 111 1445543311000000
Q ss_pred CCCcCeEEEEEccCCceeecccc-C------ceEE-EE-EEEEEEEecCC------------------------------
Q 039648 86 YGKVPNVQVYGFRTNSWREVHGH-Q------LDRY-FK-VCYWLVIADTR------------------------------ 126 (254)
Q Consensus 86 ~~~~~~~~Vys~~~~~Wr~~~~~-p------~~v~-~~-~lyWl~~~~~~------------------------------ 126 (254)
......+++|+..++.|+.+... | ..+. .+ .||=+......
T Consensus 102 ~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 102 PQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred eeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 01134689999999999998753 3 1233 56 88877542110
Q ss_pred -----CceEEEEEECCCcceeEec-CCCCCCceeEEEEeCCeEEEEecC---CCCEEEEEEEC--C-CcceEEEEEecCC
Q 039648 127 -----DLKVILSFHMDNEVFEEIK-IPPHVNYYSSISLYEDSLSIVIPD---AEQCFEIWVMN--D-NKCWAKHLTLGPF 194 (254)
Q Consensus 127 -----~~~~IvsfD~~~e~~~~i~-~P~~~~~~~~l~~~~g~L~~~~~~---~~~~~~IW~l~--~-~~~W~~~~~i~~~ 194 (254)
....+..||+.+++|+.+. +|........++..+++|.++... .....++|..+ . ...|+++..|+..
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~ 261 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPA 261 (376)
T ss_pred hhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCC
Confidence 0246999999999999874 553221334567789999999842 23455677543 2 5789998877542
Q ss_pred Cc------ceeeEEEEeCCeEEEEeCccccC-------------------CEEEEEECCCCcEEEEE
Q 039648 195 FN------FRINFGFWKNDAFFIESNSRIYG-------------------GCLFLHEHRTKEIKNLQ 236 (254)
Q Consensus 195 ~~------~~~~~~~~~~g~i~l~~~~~~~~-------------------~~~~~yd~~t~~~~~~~ 236 (254)
.. ........-++.|++.-...... ..+-.||+++++|+.+.
T Consensus 262 ~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 262 PGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred CcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 21 11111223456666554310000 12457999999998663
No 16
>PLN02153 epithiospecifier protein
Probab=97.65 E-value=0.015 Score=50.91 Aligned_cols=146 Identities=10% Similarity=0.137 Sum_probs=87.9
Q ss_pred CeEEEEEccCCceeecccc---C-------ceEEEE-EEEEEEEecCC-CceEEEEEECCCcceeEec-C-----CCCCC
Q 039648 90 PNVQVYGFRTNSWREVHGH---Q-------LDRYFK-VCYWLVIADTR-DLKVILSFHMDNEVFEEIK-I-----PPHVN 151 (254)
Q Consensus 90 ~~~~Vys~~~~~Wr~~~~~---p-------~~v~~~-~lyWl~~~~~~-~~~~IvsfD~~~e~~~~i~-~-----P~~~~ 151 (254)
..+++|+..++.|+.+... | ..+.++ .||=+...... ....+.+||+++.+|+.++ + |...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R- 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR- 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc-
Confidence 4688999999999987643 2 124556 88766432211 1246889999999999874 2 2222
Q ss_pred ceeEEEEeCCeEEEEecCCC--------CEEEEEEECC-CcceEEEEEecCC--CcceeeEEEEeCCeEEEEeCcc----
Q 039648 152 YYSSISLYEDSLSIVIPDAE--------QCFEIWVMND-NKCWAKHLTLGPF--FNFRINFGFWKNDAFFIESNSR---- 216 (254)
Q Consensus 152 ~~~~l~~~~g~L~~~~~~~~--------~~~~IW~l~~-~~~W~~~~~i~~~--~~~~~~~~~~~~g~i~l~~~~~---- 216 (254)
.....+..+++|.++..... ..-++|+++- ..+|+++-.+... ......+.+. ++.|++.-...
T Consensus 129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~ 207 (341)
T PLN02153 129 TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSIL 207 (341)
T ss_pred eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccc
Confidence 34566788999988874211 1125677665 6789986543211 1011122222 45555532100
Q ss_pred ------ccCCEEEEEECCCCcEEEEEE
Q 039648 217 ------IYGGCLFLHEHRTKEIKNLQV 237 (254)
Q Consensus 217 ------~~~~~~~~yd~~t~~~~~~~~ 237 (254)
.....+..||+++++|..+..
T Consensus 208 ~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 208 PGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cCCccceecCceEEEEcCCCcEEeccc
Confidence 002458899999999998864
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=97.63 E-value=0.0024 Score=58.58 Aligned_cols=136 Identities=6% Similarity=0.022 Sum_probs=91.5
Q ss_pred cCeEEEEEccCCceeeccccC------ceEEEE-EEEEEEEecCCCceEEEEEECCCcceeEe-cCCCCCCceeEEEEeC
Q 039648 89 VPNVQVYGFRTNSWREVHGHQ------LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEI-KIPPHVNYYSSISLYE 160 (254)
Q Consensus 89 ~~~~~Vys~~~~~Wr~~~~~p------~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i-~~P~~~~~~~~l~~~~ 160 (254)
...++.|+..+++|..+..+| ..+.++ .+|=+...+. ...+-.+|..+++|..+ ++|... .....+.++
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~--~~sve~ydp~~n~W~~~~~l~~~r-~~~~~~~~~ 362 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN--PTSVERWFHGDAAWVNMPSLLKPR-CNPAVASIN 362 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC--CCceEEEECCCCeEEECCCCCCCC-cccEEEEEC
Confidence 456888999999999998773 456778 9998765432 24578999999999887 344333 445678999
Q ss_pred CeEEEEecC--CCCEEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCcEEEEE
Q 039648 161 DSLSIVIPD--AEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNLQ 236 (254)
Q Consensus 161 g~L~~~~~~--~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~~~~ 236 (254)
|+|.++++. ....++.+-.+ ...|+....++... .....+.-+|.|++.-+ ..-.||+++++|+.+.
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~-~~~W~~~~~m~~~r--~~~~~~~~~~~IYv~GG------~~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPN-HDQWQFGPSTYYPH--YKSCALVFGRRLFLVGR------NAEFYCESSNTWTLID 431 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCC-CCEEEeCCCCCCcc--ccceEEEECCEEEEECC------ceEEecCCCCcEeEcC
Confidence 999999842 22345555433 58899865444221 11222234666766543 3678999999999763
No 18
>PLN02193 nitrile-specifier protein
Probab=97.50 E-value=0.0058 Score=55.95 Aligned_cols=150 Identities=6% Similarity=0.090 Sum_probs=93.0
Q ss_pred cEEEEcCcccccccCCCCCCC-CCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceee
Q 039648 26 RLTIWNPATREFRNLPNYKYC-NSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWRE 104 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~~-~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~ 104 (254)
+++++||.|.+|..+++.... .++ ..+.+ ..++ =|++.+..... ......+++|+..++.|+.
T Consensus 245 dv~~yD~~t~~W~~l~~~~~~P~~R-----~~h~~-~~~~-----~~iYv~GG~~~-----~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 245 GFYSFDTTTNEWKLLTPVEEGPTPR-----SFHSM-AADE-----ENVYVFGGVSA-----TARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred cEEEEECCCCEEEEcCcCCCCCCCc-----cceEE-EEEC-----CEEEEECCCCC-----CCCcceEEEEECCCCEEEe
Confidence 579999999999999765321 111 11111 1111 24555543211 1223468899999999998
Q ss_pred cccc---C------ceEEEE-EEEEEEEecCCCceEEEEEECCCcceeEecC----CCCCCceeEEEEeCCeEEEEecCC
Q 039648 105 VHGH---Q------LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKI----PPHVNYYSSISLYEDSLSIVIPDA 170 (254)
Q Consensus 105 ~~~~---p------~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~----P~~~~~~~~l~~~~g~L~~~~~~~ 170 (254)
+..+ | ..+.++ .+|-+..........+..||+++++|+.++. |... .....+..+++|.++....
T Consensus 309 ~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R-~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 309 CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER-SVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCc-ceeEEEEECCEEEEECCcc
Confidence 7653 1 234566 8876653221123569999999999998842 3222 3455678899999888421
Q ss_pred C---------CE--EEEEEECC-CcceEEEEEec
Q 039648 171 E---------QC--FEIWVMND-NKCWAKHLTLG 192 (254)
Q Consensus 171 ~---------~~--~~IW~l~~-~~~W~~~~~i~ 192 (254)
. .. -++|.++- ...|+++..++
T Consensus 388 ~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 388 AMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred CCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 1 11 26999987 77899876554
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.33 E-value=0.019 Score=49.81 Aligned_cols=134 Identities=8% Similarity=0.067 Sum_probs=83.1
Q ss_pred ceeeccccC------ceEEEE-EEEEEEEecC-CCceEEEEEECCCcce----eEe-cCCCCCCceeEEEEeCCeEEEEe
Q 039648 101 SWREVHGHQ------LDRYFK-VCYWLVIADT-RDLKVILSFHMDNEVF----EEI-KIPPHVNYYSSISLYEDSLSIVI 167 (254)
Q Consensus 101 ~Wr~~~~~p------~~v~~~-~lyWl~~~~~-~~~~~IvsfD~~~e~~----~~i-~~P~~~~~~~~l~~~~g~L~~~~ 167 (254)
.|+.+..+| ..+.++ .+|-+..... .....+..||+.+++| ..+ ++|... .....+..+|+|.++.
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~-~~~~~~~~~~~iYv~G 130 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTF-ENGSACYKDGTLYVGG 130 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCc-cCceEEEECCEEEEEe
Confidence 699887664 456778 9998864322 1235788999999987 333 333322 3456678899999998
Q ss_pred cC--CCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc-ccCCEEEEEECCCCcEEEEE
Q 039648 168 PD--AEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR-IYGGCLFLHEHRTKEIKNLQ 236 (254)
Q Consensus 168 ~~--~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~-~~~~~~~~yd~~t~~~~~~~ 236 (254)
.. ....-++|+++- ..+|+++..++... -.....+..++.|++.-... .....+..||+++++|+.+.
T Consensus 131 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 131 GNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 42 122346788776 67899876554221 11222233456676664311 00124679999999999875
No 20
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.62 E-value=0.16 Score=44.40 Aligned_cols=126 Identities=15% Similarity=0.216 Sum_probs=76.3
Q ss_pred cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEc--cCCcee
Q 039648 26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGF--RTNSWR 103 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~--~~~~Wr 103 (254)
.+.++||.|.+|..+++.+.. ++ .......++ =||..+...... ......+++|+. +++.|.
T Consensus 169 ~v~~YDp~t~~W~~~~~~p~~-~r------~~~~~~~~~-----~~iyv~GG~~~~----~~~~~~~~~y~~~~~~~~W~ 232 (346)
T TIGR03547 169 NVLSYDPSTNQWRNLGENPFL-GT------AGSAIVHKG-----NKLLLINGEIKP----GLRTAEVKQYLFTGGKLEWN 232 (346)
T ss_pred eEEEEECCCCceeECccCCCC-cC------CCceEEEEC-----CEEEEEeeeeCC----CccchheEEEEecCCCceee
Confidence 468999999999999876532 11 111111222 256665432111 112234556665 567999
Q ss_pred eccccC--c-----------eEEEE-EEEEEEEecCC------------------CceEEEEEECCCcceeEe-cCCCCC
Q 039648 104 EVHGHQ--L-----------DRYFK-VCYWLVIADTR------------------DLKVILSFHMDNEVFEEI-KIPPHV 150 (254)
Q Consensus 104 ~~~~~p--~-----------~v~~~-~lyWl~~~~~~------------------~~~~IvsfD~~~e~~~~i-~~P~~~ 150 (254)
.+..+| . .+.++ .||-+...... ....+-.||.++++|+.+ ++|...
T Consensus 233 ~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~ 312 (346)
T TIGR03547 233 KLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL 312 (346)
T ss_pred ecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc
Confidence 887663 1 24567 89877543210 012577899999999887 555543
Q ss_pred CceeEEEEeCCeEEEEec
Q 039648 151 NYYSSISLYEDSLSIVIP 168 (254)
Q Consensus 151 ~~~~~l~~~~g~L~~~~~ 168 (254)
.....+.++|+|.++..
T Consensus 313 -~~~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 313 -AYGVSVSWNNGVLLIGG 329 (346)
T ss_pred -eeeEEEEcCCEEEEEec
Confidence 34556788999999994
No 21
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.60 E-value=0.16 Score=44.95 Aligned_cols=202 Identities=11% Similarity=0.157 Sum_probs=108.7
Q ss_pred cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEee-eeccccccC--CCcCeEEEEEccCCce
Q 039648 26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHN-LWNEKRKRY--GKVPNVQVYGFRTNSW 102 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~-~~~~~~~~~--~~~~~~~Vys~~~~~W 102 (254)
++|.+|--+.+|+++-.+....|+ . . +..+..|+. ++.++. .+.+ |... .+-...-+|++.++.|
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pR----s-s--hq~va~~s~----~l~~fGGEfaS-Pnq~qF~HYkD~W~fd~~trkw 166 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPR----S-S--HQAVAVPSN----ILWLFGGEFAS-PNQEQFHHYKDLWLFDLKTRKW 166 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCC----c-c--ceeEEeccC----eEEEeccccCC-cchhhhhhhhheeeeeeccchh
Confidence 579999999999998443332222 1 1 122222332 233321 1111 1111 1123467899999999
Q ss_pred eecccc--C------ceEEEE-EEEEEEEecCCC-----ceEEEEEECCCcceeEecCCCCCC---ceeEEEEe-CCeEE
Q 039648 103 REVHGH--Q------LDRYFK-VCYWLVIADTRD-----LKVILSFHMDNEVFEEIKIPPHVN---YYSSISLY-EDSLS 164 (254)
Q Consensus 103 r~~~~~--p------~~v~~~-~lyWl~~~~~~~-----~~~IvsfD~~~e~~~~i~~P~~~~---~~~~l~~~-~g~L~ 164 (254)
..+... | +-|... .|--....+... -.-+.+||+++=+|+.+..+.... ..+.+... +|.+.
T Consensus 167 eql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~ 246 (521)
T KOG1230|consen 167 EQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIV 246 (521)
T ss_pred eeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEE
Confidence 998766 3 223222 221111111111 136899999999999996544211 33455555 88888
Q ss_pred EEec-----------CCCCEEEEEEECC------CcceEEEEEec--CCCcceeeEEEEeCCe-EEEEeCcc--------
Q 039648 165 IVIP-----------DAEQCFEIWVMND------NKCWAKHLTLG--PFFNFRINFGFWKNDA-FFIESNSR-------- 216 (254)
Q Consensus 165 ~~~~-----------~~~~~~~IW~l~~------~~~W~~~~~i~--~~~~~~~~~~~~~~g~-i~l~~~~~-------- 216 (254)
+.+. .....-++|.|+. +=.|+++.... |.+....-+++++++. +++---..
T Consensus 247 vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl 326 (521)
T KOG1230|consen 247 VYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESL 326 (521)
T ss_pred EEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhh
Confidence 7773 1234568999996 23566665544 2222333345555443 22211000
Q ss_pred --ccCCEEEEEECCCCcEEEEEEcC
Q 039648 217 --IYGGCLFLHEHRTKEIKNLQVTN 239 (254)
Q Consensus 217 --~~~~~~~~yd~~t~~~~~~~~~~ 239 (254)
.....|+.||+..++|...++++
T Consensus 327 ~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 327 SGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred hhhhhhhhhheecccchhhHhhhcc
Confidence 00245899999999998777765
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.59 E-value=0.079 Score=44.22 Aligned_cols=207 Identities=12% Similarity=0.139 Sum_probs=111.8
Q ss_pred ccEEEEcCcccccccCCCC--CCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeee---eccccccCCCcCeEEEEEccC
Q 039648 25 NRLTIWNPATREFRNLPNY--KYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNL---WNEKRKRYGKVPNVQVYGFRT 99 (254)
Q Consensus 25 ~~~~V~NP~T~~~~~LP~~--~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~---~~~~~~~~~~~~~~~Vys~~~ 99 (254)
.+..|.|-.+-+|.++|+. ....+.-+....+..+| +.||.+... ++...++........-|+-++
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYG---------HtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t 114 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYG---------HTVVEYQDKAYVWGGRNDDEGACNLLYEFDPET 114 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcC---------ceEEEEcceEEEEcCccCcccccceeeeecccc
Confidence 4579999999999999983 22111100011122222 233333221 111111123344566788899
Q ss_pred Cceeecccc---C------ceEEEE-EEEEEEEecCCC---ceEEEEEECCCcceeEecC---CCCCCceeEEEEeCCeE
Q 039648 100 NSWREVHGH---Q------LDRYFK-VCYWLVIADTRD---LKVILSFHMDNEVFEEIKI---PPHVNYYSSISLYEDSL 163 (254)
Q Consensus 100 ~~Wr~~~~~---p------~~v~~~-~lyWl~~~~~~~---~~~IvsfD~~~e~~~~i~~---P~~~~~~~~l~~~~g~L 163 (254)
+.|+..... | +...++ .+|=...-.... ..-+-+||+++-+|+.+.- |+....+..-..+++.+
T Consensus 115 ~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~M 194 (392)
T KOG4693|consen 115 NVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMM 194 (392)
T ss_pred ccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceE
Confidence 999875433 3 445556 777554221111 1368889999999999843 43322334445667777
Q ss_pred EEEecC-----------CCCEEEEEEECC-CcceEEEEEecCCCcceeeE-EEEeCCeEEEEeCc---c-ccCCEEEEEE
Q 039648 164 SIVIPD-----------AEQCFEIWVMND-NKCWAKHLTLGPFFNFRINF-GFWKNDAFFIESNS---R-IYGGCLFLHE 226 (254)
Q Consensus 164 ~~~~~~-----------~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~-~~~~~g~i~l~~~~---~-~~~~~~~~yd 226 (254)
.+.... +.-.-.|-.|+- .+.|.....-+..+.-.+-- .+.-+|++++--.- . +.-..+..||
T Consensus 195 YiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~Fd 274 (392)
T KOG4693|consen 195 YIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFD 274 (392)
T ss_pred EEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecc
Confidence 777631 111234555554 67888763222112111111 12235665543220 0 1234689999
Q ss_pred CCCCcEEEEEEcCc
Q 039648 227 HRTKEIKNLQVTNP 240 (254)
Q Consensus 227 ~~t~~~~~~~~~~~ 240 (254)
++|..|+.+..+|.
T Consensus 275 P~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 275 PKTSMWSVISVRGK 288 (392)
T ss_pred cccchheeeeccCC
Confidence 99999999988875
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.55 E-value=0.14 Score=45.41 Aligned_cols=144 Identities=10% Similarity=0.137 Sum_probs=82.9
Q ss_pred cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEE--EEccCCcee
Q 039648 26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQV--YGFRTNSWR 103 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~V--ys~~~~~Wr 103 (254)
++.++||.|.+|..+++.|... + ........+ -||..+...... ......+.+ |+.+++.|.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~-~------~~~a~v~~~-----~~iYv~GG~~~~----~~~~~~~~~~~~~~~~~~W~ 253 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLG-T------AGSAVVIKG-----NKLWLINGEIKP----GLRTDAVKQGKFTGNNLKWQ 253 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCC-C------CcceEEEEC-----CEEEEEeeeECC----CcCChhheEEEecCCCccee
Confidence 4799999999999998765421 1 111111222 366666542111 111222333 455678999
Q ss_pred eccccC--c------------eEEEE-EEEEEEEecCCC------------------ceEEEEEECCCcceeEe-cCCCC
Q 039648 104 EVHGHQ--L------------DRYFK-VCYWLVIADTRD------------------LKVILSFHMDNEVFEEI-KIPPH 149 (254)
Q Consensus 104 ~~~~~p--~------------~v~~~-~lyWl~~~~~~~------------------~~~IvsfD~~~e~~~~i-~~P~~ 149 (254)
.+..+| + .+.++ .||-+....... ...+-.||+++.+|+.+ ++|..
T Consensus 254 ~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~ 333 (376)
T PRK14131 254 KLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG 333 (376)
T ss_pred ecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC
Confidence 887663 1 24567 888665322100 01345799999999877 45544
Q ss_pred CCceeEEEEeCCeEEEEecC---CCCEEEEEEECC-CcceE
Q 039648 150 VNYYSSISLYEDSLSIVIPD---AEQCFEIWVMND-NKCWA 186 (254)
Q Consensus 150 ~~~~~~l~~~~g~L~~~~~~---~~~~~~IW~l~~-~~~W~ 186 (254)
. .....+.++|+|.++... ....-+|+.++. ++.|+
T Consensus 334 r-~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 334 L-AYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred c-cceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 3 334567889999999942 234456777664 34443
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.06 E-value=2.6 Score=38.81 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=93.7
Q ss_pred cEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCceeec
Q 039648 26 RLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWREV 105 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr~~ 105 (254)
++...|+.|++|..+.+.....+. ...+ ...+++ =||+.+...... ......+.||+.++..|.++
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~~P~~----r~~H-s~~~~g-----~~l~vfGG~~~~----~~~~ndl~i~d~~~~~W~~~ 205 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGDPPPP----RAGH-SATVVG-----TKLVVFGGIGGT----GDSLNDLHIYDLETSTWSEL 205 (482)
T ss_pred heEeccCCCCcEEEecCcCCCCCC----cccc-eEEEEC-----CEEEEECCccCc----ccceeeeeeeccccccceec
Confidence 689999999999998664432111 1111 122222 134444321111 12466899999999999998
Q ss_pred ccc---C-----ceEEEE-EEEEEEEecC-CC--ceEEEEEECCCcceeEec----CCCCCCceeEEEEeCCeEEEEecC
Q 039648 106 HGH---Q-----LDRYFK-VCYWLVIADT-RD--LKVILSFHMDNEVFEEIK----IPPHVNYYSSISLYEDSLSIVIPD 169 (254)
Q Consensus 106 ~~~---p-----~~v~~~-~lyWl~~~~~-~~--~~~IvsfD~~~e~~~~i~----~P~~~~~~~~l~~~~g~L~~~~~~ 169 (254)
... | ..+.+- .-+|+..... .. -.-+..||+.+.+|..++ .|... ....++..+..+.++...
T Consensus 206 ~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R-~~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 206 DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR-SGHSLTVSGDHLLLFGGG 284 (482)
T ss_pred ccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc-ceeeeEEECCEEEEEcCC
Confidence 766 2 223333 5555544332 11 257899999999888442 22222 456667778888888842
Q ss_pred CC----CEEEEEEECC-CcceEEEEEec
Q 039648 170 AE----QCFEIWVMND-NKCWAKHLTLG 192 (254)
Q Consensus 170 ~~----~~~~IW~l~~-~~~W~~~~~i~ 192 (254)
.. .--+.|.|+. ...|++.....
T Consensus 285 ~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 285 TDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccccccccccccceeeeeccc
Confidence 22 4678899887 78999988777
No 25
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.05 E-value=2.2 Score=39.34 Aligned_cols=148 Identities=13% Similarity=0.172 Sum_probs=94.9
Q ss_pred eEEEEEccCCceeecccc---C------ceEEEE-EEEEEEEecC--CCceEEEEEECCCcceeEecC----CCCCCcee
Q 039648 91 NVQVYGFRTNSWREVHGH---Q------LDRYFK-VCYWLVIADT--RDLKVILSFHMDNEVFEEIKI----PPHVNYYS 154 (254)
Q Consensus 91 ~~~Vys~~~~~Wr~~~~~---p------~~v~~~-~lyWl~~~~~--~~~~~IvsfD~~~e~~~~i~~----P~~~~~~~ 154 (254)
.+.++++.+..|...... | ..+.++ .||-...... .....+-+||+.+.+|..+.. |+.. ...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r-~~H 167 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR-AGH 167 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc-ccc
Confidence 477777777778765444 2 456777 7877654432 123579999999999998843 2222 556
Q ss_pred EEEEeCCeEEEEec---CCCCEEEEEEECC-CcceEEEEEecCCCc--ceeeEEEEeCCeEEEEeCcc---ccCCEEEEE
Q 039648 155 SISLYEDSLSIVIP---DAEQCFEIWVMND-NKCWAKHLTLGPFFN--FRINFGFWKNDAFFIESNSR---IYGGCLFLH 225 (254)
Q Consensus 155 ~l~~~~g~L~~~~~---~~~~~~~IW~l~~-~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~l~~~~~---~~~~~~~~y 225 (254)
.++..+.+|.+.+. .....-++|+++- ...|.+....++.+. ..+.+.+. ++.+++..+.. ..-.-+..+
T Consensus 168 s~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~l 246 (482)
T KOG0379|consen 168 SATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHIL 246 (482)
T ss_pred eEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEee
Confidence 77888888888883 2225678999986 667999988775432 22333333 34444443321 112348999
Q ss_pred ECCCCcEEEEEEcCc
Q 039648 226 EHRTKEIKNLQVTNP 240 (254)
Q Consensus 226 d~~t~~~~~~~~~~~ 240 (254)
|+.+.+|+.+...+.
T Consensus 247 dl~~~~W~~~~~~g~ 261 (482)
T KOG0379|consen 247 DLSTWEWKLLPTGGD 261 (482)
T ss_pred ecccceeeeccccCC
Confidence 999999986655543
No 26
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.23 E-value=3.7 Score=36.38 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=73.9
Q ss_pred CCceeeccccC----ceEEEE-EEEEEEEecCCCceEEEEEECCCcceeEecC--C---C-CC-CceeEEEEeCCeEEEE
Q 039648 99 TNSWREVHGHQ----LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFEEIKI--P---P-HV-NYYSSISLYEDSLSIV 166 (254)
Q Consensus 99 ~~~Wr~~~~~p----~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~--P---~-~~-~~~~~l~~~~g~L~~~ 166 (254)
.++|..++... .-|+.+ .+|=+... ..+.++|.+-+. +++.. . . .. .....|++.+|.|.+|
T Consensus 189 ~~~Wt~l~~~~~~~~DIi~~kGkfYAvD~~-----G~l~~i~~~l~i-~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV 262 (373)
T PLN03215 189 GNVLKALKQMGYHFSDIIVHKGQTYALDSI-----GIVYWINSDLEF-SRFGTSLDENITDGCWTGDRRFVECCGELYIV 262 (373)
T ss_pred CCeeeEccCCCceeeEEEEECCEEEEEcCC-----CeEEEEecCCce-eeecceecccccCCcccCceeEEEECCEEEEE
Confidence 47888886542 345666 77765322 246666643221 12211 1 0 11 1346799999999999
Q ss_pred ec---C-------------CCCEEEEEEECC-CcceEEEEEecCCCcc---eeeEEE-------EeCCeEEEEeCccccC
Q 039648 167 IP---D-------------AEQCFEIWVMND-NKCWAKHLTLGPFFNF---RINFGF-------WKNDAFFIESNSRIYG 219 (254)
Q Consensus 167 ~~---~-------------~~~~~~IW~l~~-~~~W~~~~~i~~~~~~---~~~~~~-------~~~g~i~l~~~~~~~~ 219 (254)
.. . ....++|++++. ..+|+++.+++..-.+ ...+++ .+.+.|++.. +
T Consensus 263 ~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtd-----d 337 (373)
T PLN03215 263 ERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTE-----D 337 (373)
T ss_pred EEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEEC-----C
Confidence 83 1 124689999987 7899999888632101 111222 1234566665 4
Q ss_pred CEEEEEECCCCcEEEE
Q 039648 220 GCLFLHEHRTKEIKNL 235 (254)
Q Consensus 220 ~~~~~yd~~t~~~~~~ 235 (254)
....+||++.++..-+
T Consensus 338 ~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 338 TMPKVFKLDNGNGSSI 353 (373)
T ss_pred CcceEEECCCCCccce
Confidence 5678999999986554
No 27
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=93.38 E-value=0.76 Score=34.19 Aligned_cols=65 Identities=17% Similarity=0.339 Sum_probs=50.3
Q ss_pred eEEEEEECCCc--ceeEecCCCCCC-------------ceeEEEEeCCeEEEEe---c------CCCCEEEEEEECC---
Q 039648 129 KVILSFHMDNE--VFEEIKIPPHVN-------------YYSSISLYEDSLSIVI---P------DAEQCFEIWVMND--- 181 (254)
Q Consensus 129 ~~IvsfD~~~e--~~~~i~~P~~~~-------------~~~~l~~~~g~L~~~~---~------~~~~~~~IW~l~~--- 181 (254)
.+|+..|+-.+ .++.++||.... ....++..+|+|-++. . ...-.+.+|.|+.
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 36899998766 788899998653 2357888999998887 1 1355799999997
Q ss_pred -CcceEEEEEecC
Q 039648 182 -NKCWAKHLTLGP 193 (254)
Q Consensus 182 -~~~W~~~~~i~~ 193 (254)
...|.+.+++..
T Consensus 86 ~~~~W~~d~~v~~ 98 (131)
T PF07762_consen 86 SSWEWKKDCEVDL 98 (131)
T ss_pred CCCCEEEeEEEEh
Confidence 568999998874
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=92.23 E-value=2.8 Score=37.37 Aligned_cols=100 Identities=13% Similarity=0.262 Sum_probs=70.4
Q ss_pred eEEEEEccCCceeecccc--C------ceEEEE-EEEEEEEecCC--------CceEEEEEECCCcceeEecCCCCCC--
Q 039648 91 NVQVYGFRTNSWREVHGH--Q------LDRYFK-VCYWLVIADTR--------DLKVILSFHMDNEVFEEIKIPPHVN-- 151 (254)
Q Consensus 91 ~~~Vys~~~~~Wr~~~~~--p------~~v~~~-~lyWl~~~~~~--------~~~~IvsfD~~~e~~~~i~~P~~~~-- 151 (254)
....|+.+.+.|+.+.++ | ..|.+. ..-|+-..... +-.-+..||+.+.+|.++.++..+.
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R 178 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR 178 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence 456788899999998877 2 345555 66666543321 1246889999999999999887655
Q ss_pred ceeEEEEeCCeEEEEec--CCCC----EEEEEEECC-CcceEEEEE
Q 039648 152 YYSSISLYEDSLSIVIP--DAEQ----CFEIWVMND-NKCWAKHLT 190 (254)
Q Consensus 152 ~~~~l~~~~g~L~~~~~--~~~~----~~~IW~l~~-~~~W~~~~~ 190 (254)
...+++..+..|.+.+. .... -=++|+.+- .-.|+++-.
T Consensus 179 SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 179 SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 55788899999998883 1111 236788775 678999754
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=91.87 E-value=2.9 Score=35.17 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=89.7
Q ss_pred CCCcCeEEEEEccCCceeecccc-------------C------ceE-EEE-EEEEEEEecCCCc-eEEEEEECCCcceeE
Q 039648 86 YGKVPNVQVYGFRTNSWREVHGH-------------Q------LDR-YFK-VCYWLVIADTRDL-KVILSFHMDNEVFEE 143 (254)
Q Consensus 86 ~~~~~~~~Vys~~~~~Wr~~~~~-------------p------~~v-~~~-~lyWl~~~~~~~~-~~IvsfD~~~e~~~~ 143 (254)
....+.++|+...+-.|..+... | .-| |-+ +.-|-..++.+.. ..+.+||.++..|..
T Consensus 40 ~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~ 119 (392)
T KOG4693|consen 40 AKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKK 119 (392)
T ss_pred cCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccc
Confidence 45567899999999899876542 2 233 334 6667665554433 478899999999986
Q ss_pred ecC----CCCCCceeEEEEeCCeEEEEecC----CCCEEEEEEECC-CcceEEEEEecCCC---c------ceeeEEEEe
Q 039648 144 IKI----PPHVNYYSSISLYEDSLSIVIPD----AEQCFEIWVMND-NKCWAKHLTLGPFF---N------FRINFGFWK 205 (254)
Q Consensus 144 i~~----P~~~~~~~~l~~~~g~L~~~~~~----~~~~~~IW~l~~-~~~W~~~~~i~~~~---~------~~~~~~~~~ 205 (254)
-+. |... ....-.+.+..+.+.... +.-.-++-+|+- ...|..+++-...+ . +...+.++.
T Consensus 120 p~v~G~vPgaR-DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFG 198 (392)
T KOG4693|consen 120 PEVEGFVPGAR-DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFG 198 (392)
T ss_pred cceeeecCCcc-CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEec
Confidence 543 4333 334556777887777731 222456777776 67899988775321 1 122222221
Q ss_pred --CCe-EEEEeCccccCCEEEEEECCCCcEEEE
Q 039648 206 --NDA-FFIESNSRIYGGCLFLHEHRTKEIKNL 235 (254)
Q Consensus 206 --~g~-i~l~~~~~~~~~~~~~yd~~t~~~~~~ 235 (254)
.++ -.+-+.....+..+.+.|++|+.|.+-
T Consensus 199 GR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 199 GRSDESGPFHSIHEQYCDTIMALDLATGAWTRT 231 (392)
T ss_pred cccccCCCccchhhhhcceeEEEeccccccccC
Confidence 111 112111112356899999999999865
No 30
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.30 E-value=8.3 Score=32.75 Aligned_cols=209 Identities=12% Similarity=0.064 Sum_probs=112.9
Q ss_pred cCceEEEEEcCCccEEEEcCcccccccCCCCCCCCCCCCC-----CCC--cceEEE-EeeCCCCCeEEEEEeeeeccccc
Q 039648 13 HDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRL-----IPP--STFICL-ESDPINNDFKLLFVHNLWNEKRK 84 (254)
Q Consensus 13 cnGLlcl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~-----~~~--~~~~g~-g~d~~~~~yKVv~~~~~~~~~~~ 84 (254)
-+|-+-+....+--+==.||.|++....|......|++-. ..+ ....++ -+|+++.+++=+.+....
T Consensus 71 pdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~----- 145 (353)
T COG4257 71 PDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEH----- 145 (353)
T ss_pred CCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccccc-----
Confidence 3555554443211123349999999999987655554210 000 111122 246666555555443211
Q ss_pred cCCCcCeEEEEEccCCceee--------ccc-------c--C-----ceEEEE---EEEEEEEecCCCceEEEEEECCCc
Q 039648 85 RYGKVPNVQVYGFRTNSWRE--------VHG-------H--Q-----LDRYFK---VCYWLVIADTRDLKVILSFHMDNE 139 (254)
Q Consensus 85 ~~~~~~~~~Vys~~~~~Wr~--------~~~-------~--p-----~~v~~~---~lyWl~~~~~~~~~~IvsfD~~~e 139 (254)
....+..-||+=..+-|=. ++. . | .+|+++ .+++-...+ ..|...|..+.
T Consensus 146 -a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag----naiaridp~~~ 220 (353)
T COG4257 146 -ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG----NAIARIDPFAG 220 (353)
T ss_pred -CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc----cceEEcccccC
Confidence 2234455677766666722 110 0 2 577777 665543322 37999999999
Q ss_pred ceeEecCCCCCC--ceeEEEEeCCeEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCcc
Q 039648 140 VFEEIKIPPHVN--YYSSISLYEDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSR 216 (254)
Q Consensus 140 ~~~~i~~P~~~~--~~~~l~~~~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~ 216 (254)
.-++++.|+... .+..-....|++-... ...-.+-..+. ..+|.. |.++-...-..-+.+...|.+.+....
T Consensus 221 ~aev~p~P~~~~~gsRriwsdpig~~witt---wg~g~l~rfdPs~~sW~e-ypLPgs~arpys~rVD~~grVW~sea~- 295 (353)
T COG4257 221 HAEVVPQPNALKAGSRRIWSDPIGRAWITT---WGTGSLHRFDPSVTSWIE-YPLPGSKARPYSMRVDRHGRVWLSEAD- 295 (353)
T ss_pred CcceecCCCcccccccccccCccCcEEEec---cCCceeeEeCccccccee-eeCCCCCCCcceeeeccCCcEEeeccc-
Confidence 888999998743 1211123344443332 11112223332 455766 555533212233455667777775442
Q ss_pred ccCCEEEEEECCCCcEEEEEEc
Q 039648 217 IYGGCLFLHEHRTKEIKNLQVT 238 (254)
Q Consensus 217 ~~~~~~~~yd~~t~~~~~~~~~ 238 (254)
.+.+..+|++|.++..+.+.
T Consensus 296 --agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 296 --AGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred --cCceeecCcccceEEEecCC
Confidence 57799999999999988665
No 31
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.42 E-value=13 Score=31.61 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=73.9
Q ss_pred EEeccCceEEEEEcCCccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCC
Q 039648 9 FVGYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGK 88 (254)
Q Consensus 9 i~~scnGLlcl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~ 88 (254)
|...-||=+-...-.+.-+..-||.+..-..+|.+..... + .=+..-|+... +++.. -.
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~-g-------sRriwsdpig~----~witt---------wg 252 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKA-G-------SRRIWSDPIGR----AWITT---------WG 252 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccc-c-------ccccccCccCc----EEEec---------cC
Confidence 4455566665554433336788999998888887755211 1 11222233221 22221 11
Q ss_pred cCeEEEEEccCCceeecccc---C--ceEEEE--EEEEEEEecCCCceEEEEEECCCcceeEecCCCCC
Q 039648 89 VPNVQVYGFRTNSWREVHGH---Q--LDRYFK--VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHV 150 (254)
Q Consensus 89 ~~~~~Vys~~~~~Wr~~~~~---p--~~v~~~--~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~ 150 (254)
.-.+.-|+=...+|++-..+ + ..++++ -.-|+...+. ..|..||.++++|+++++|..-
T Consensus 253 ~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~a---gai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA---GAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred CceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecccc---CceeecCcccceEEEecCCCCC
Confidence 23456666677788876554 3 788998 8889865543 3799999999999999988653
No 32
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.93 E-value=25 Score=31.35 Aligned_cols=144 Identities=11% Similarity=0.099 Sum_probs=79.2
Q ss_pred CeEEEEEccCC-----ceeecccc-C---ceE-EEE-EEEEEEEecCCCceEEEEEECCCcc---eeEecCCCCCC-cee
Q 039648 90 PNVQVYGFRTN-----SWREVHGH-Q---LDR-YFK-VCYWLVIADTRDLKVILSFHMDNEV---FEEIKIPPHVN-YYS 154 (254)
Q Consensus 90 ~~~~Vys~~~~-----~Wr~~~~~-p---~~v-~~~-~lyWl~~~~~~~~~~IvsfD~~~e~---~~~i~~P~~~~-~~~ 154 (254)
..+.+.++.++ .|+.+... + ..+ +.+ .+|.++. .......|++.|+++-. |..+-+|.... ...
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn-~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~ 330 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTN-DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE 330 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE--TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeC-CCCCCcEEEEecccccccccceeEEcCCCCceeEE
Confidence 45555666553 67776543 2 223 234 6776665 33345799999999765 55433333322 345
Q ss_pred EEEEeCCeEEEEec-CCCCEEEEEEECCCcceEEEEEecCCCcceeeEEE-EeCCeEEEEeCccccCCEEEEEECCCCcE
Q 039648 155 SISLYEDSLSIVIP-DAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGF-WKNDAFFIESNSRIYGGCLFLHEHRTKEI 232 (254)
Q Consensus 155 ~l~~~~g~L~~~~~-~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~-~~~g~i~l~~~~~~~~~~~~~yd~~t~~~ 232 (254)
.+...++.|.+... .....+.|+-++ ..|.....-.+..+....+.. .+.+++++....+.....++.||+++++.
T Consensus 331 ~~~~~~~~Lvl~~~~~~~~~l~v~~~~--~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 331 DVSLFKDYLVLSYRENGSSRLRVYDLD--DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETT---TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEECCEEEEEEEECCccEEEEEECC--CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 55667889887773 334556666555 134433222222211111111 23556777766555577899999999999
Q ss_pred EEEE
Q 039648 233 KNLQ 236 (254)
Q Consensus 233 ~~~~ 236 (254)
+.+.
T Consensus 409 ~~~k 412 (414)
T PF02897_consen 409 TLLK 412 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 33
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=85.49 E-value=26 Score=31.60 Aligned_cols=118 Identities=14% Similarity=0.274 Sum_probs=70.7
Q ss_pred cCeEEEEEccCCceeecccc-----C-ceEEEE-EEEEEEEecCCCceEEEEEECCC-cceeEecCCCCCC-ceeEEEEe
Q 039648 89 VPNVQVYGFRTNSWREVHGH-----Q-LDRYFK-VCYWLVIADTRDLKVILSFHMDN-EVFEEIKIPPHVN-YYSSISLY 159 (254)
Q Consensus 89 ~~~~~Vys~~~~~Wr~~~~~-----p-~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~-e~~~~i~~P~~~~-~~~~l~~~ 159 (254)
...+.||++.+.. .+..+ | ..+-+. .=||++.... ...|..+|+.. +-|..+++|+... ....+...
T Consensus 368 d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad--d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S 443 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD--DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS 443 (506)
T ss_pred CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec--CCeEEEEEehhhcccceeeccccccceeEEEcCC
Confidence 3456777777654 33322 3 677777 9999986532 23599999985 4788888888643 22333333
Q ss_pred CCeEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeC
Q 039648 160 EDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESN 214 (254)
Q Consensus 160 ~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~ 214 (254)
+-.|.+. ...+.|...++ ..+|++.-......+...-+.+.+....+...+
T Consensus 444 Gt~L~~~----g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 444 GTYLGIA----GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred CCeEEee----cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeecc
Confidence 3333333 46788888887 789999876654332333333444444444433
No 34
>PF13964 Kelch_6: Kelch motif
Probab=85.40 E-value=2.2 Score=25.65 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=18.2
Q ss_pred ccEEEEcCcccccccCCCCCC
Q 039648 25 NRLTIWNPATREFRNLPNYKY 45 (254)
Q Consensus 25 ~~~~V~NP~T~~~~~LP~~~~ 45 (254)
.++.++||.|++|..||+.+.
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCC
Confidence 457999999999999998764
No 35
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=82.25 E-value=1.7 Score=26.02 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=13.9
Q ss_pred cEEEEcCcccccccCCCCC
Q 039648 26 RLTIWNPATREFRNLPNYK 44 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~ 44 (254)
+++++|+.|++|.+||++|
T Consensus 30 d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 30 DLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -EEEEETTTTEEEE--SS-
T ss_pred CEEEEECCCCEEEECCCCC
Confidence 5799999999999997765
No 36
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=81.75 E-value=20 Score=32.43 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=61.7
Q ss_pred ceEEEEEECCCcceeEecCCCCCC--ce--eEEEEeCCeEEEEecCCCCEEEEEEECCCcceEEEEEecCCCcceeeEEE
Q 039648 128 LKVILSFHMDNEVFEEIKIPPHVN--YY--SSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGF 203 (254)
Q Consensus 128 ~~~IvsfD~~~e~~~~i~~P~~~~--~~--~~l~~~~g~L~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~ 203 (254)
+.++.++|+++.++..+..|.... .. ..+...+..|++.+. ...|.+-.++ ...|..-+.|+ +...-+.+
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~--~G~I~lLhak-T~eli~s~Kie---G~v~~~~f 352 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN--NGHIHLLHAK-TKELITSFKIE---GVVSDFTF 352 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc--CceEEeehhh-hhhhhheeeec---cEEeeEEE
Confidence 358999999999999998777554 22 222333444444442 3334433333 35666666654 24456677
Q ss_pred EeCCeEEEEeCccccCCEEEEEECCCCcEE
Q 039648 204 WKNDAFFIESNSRIYGGCLFLHEHRTKEIK 233 (254)
Q Consensus 204 ~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~ 233 (254)
..+++.++.++. .+++..+|++++...
T Consensus 353 sSdsk~l~~~~~---~GeV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 353 SSDSKELLASGG---TGEVYVWNLRQNSCL 379 (514)
T ss_pred ecCCcEEEEEcC---CceEEEEecCCcceE
Confidence 778887776653 679999999988543
No 37
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=79.22 E-value=43 Score=29.29 Aligned_cols=110 Identities=10% Similarity=0.150 Sum_probs=65.5
Q ss_pred eEEEEEECCCcceeEe---cCCCCCCceeEEEEeCCeEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCc-c-----e
Q 039648 129 KVILSFHMDNEVFEEI---KIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFN-F-----R 198 (254)
Q Consensus 129 ~~IvsfD~~~e~~~~i---~~P~~~~~~~~l~~~~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~-~-----~ 198 (254)
..|..||++++..... .+++....+.-...=+|+++.+...-..++.+|..+. .++-..+-++..++. + .
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 4556666664444322 2222221223334558888888866688999999998 577777777765431 2 3
Q ss_pred eeEEEEeCCeEEEEeCccccCCEEEEEECCCCcEEEEEEc
Q 039648 199 INFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNLQVT 238 (254)
Q Consensus 199 ~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~~~~~~ 238 (254)
..+.+..+|..++.++.....-.++.-|..+++++.+...
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 4456677888777766321223345566677777766553
No 38
>PF13964 Kelch_6: Kelch motif
Probab=79.00 E-value=4.5 Score=24.21 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=20.5
Q ss_pred eEEEE-EEEEEEEecC--CCceEEEEEECCCcceeEe
Q 039648 111 DRYFK-VCYWLVIADT--RDLKVILSFHMDNEVFEEI 144 (254)
Q Consensus 111 ~v~~~-~lyWl~~~~~--~~~~~IvsfD~~~e~~~~i 144 (254)
.+.++ .||-+..... .....+..||+++++|+.+
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQL 43 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEEC
Confidence 34555 6665543322 1235677888888888877
No 39
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.94 E-value=8.5 Score=20.50 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=20.2
Q ss_pred eCCeEEEEeCccccCCEEEEEECCCCcEEE
Q 039648 205 KNDAFFIESNSRIYGGCLFLHEHRTKEIKN 234 (254)
Q Consensus 205 ~~g~i~l~~~~~~~~~~~~~yd~~t~~~~~ 234 (254)
.+|.+++... ++.++++|.++++..+
T Consensus 5 ~~~~v~~~~~----~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGST----DGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcC----CCEEEEEEcccCcEEE
Confidence 4556676666 7899999999988765
No 40
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=74.68 E-value=59 Score=28.51 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=65.7
Q ss_pred EEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEcc--------
Q 039648 27 LTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFR-------- 98 (254)
Q Consensus 27 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~-------- 98 (254)
.+|+++.|+....+|..... +. .-..+.. . =++..+.........+......+|+++.+
T Consensus 88 t~vyDt~t~av~~~P~l~~p--k~----~pisv~V-----G--~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~ 154 (342)
T PF07893_consen 88 TLVYDTDTRAVATGPRLHSP--KR----CPISVSV-----G--DKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSP 154 (342)
T ss_pred eEEEECCCCeEeccCCCCCC--Cc----ceEEEEe-----C--CeEEEeeccCccccccCccceeEEEeccccccccccC
Confidence 49999999999999986442 21 1111222 1 12444433211110000001155665322
Q ss_pred --CCceeeccccC---ce------EEEEEEE-----EEEEecCCCceEEEEEECCCcceeEe---cCCCCCC--------
Q 039648 99 --TNSWREVHGHQ---LD------RYFKVCY-----WLVIADTRDLKVILSFHMDNEVFEEI---KIPPHVN-------- 151 (254)
Q Consensus 99 --~~~Wr~~~~~p---~~------v~~~~ly-----Wl~~~~~~~~~~IvsfD~~~e~~~~i---~~P~~~~-------- 151 (254)
+.+|+.+..+| .. |..-++| |+..... ...-.|||+++.+|+.. .||-...
T Consensus 155 ~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~--~~GTysfDt~~~~W~~~GdW~LPF~G~a~y~~el~ 232 (342)
T PF07893_consen 155 EESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR--RWGTYSFDTESHEWRKHGDWMLPFHGQAEYVPELD 232 (342)
T ss_pred CCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC--ceEEEEEEcCCcceeeccceecCcCCccEECCCcC
Confidence 24789887764 11 2111444 4433321 13689999999999986 6776543
Q ss_pred ceeEEEEeC--CeEEEEe
Q 039648 152 YYSSISLYE--DSLSIVI 167 (254)
Q Consensus 152 ~~~~l~~~~--g~L~~~~ 167 (254)
.+..|...+ +.||.+.
T Consensus 233 ~W~Gls~~~~~~~lca~d 250 (342)
T PF07893_consen 233 LWFGLSSDGGGGHLCACD 250 (342)
T ss_pred eEEEeccCCCCcEEEEEe
Confidence 223333334 4787776
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=73.37 E-value=7.4 Score=23.22 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=18.5
Q ss_pred CCCcCeEEEEEccCCceeecccc
Q 039648 86 YGKVPNVQVYGFRTNSWREVHGH 108 (254)
Q Consensus 86 ~~~~~~~~Vys~~~~~Wr~~~~~ 108 (254)
......+++|+.+++.|+.+..+
T Consensus 26 ~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 26 GSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CcccceeEEEECCCCEEeecCCC
Confidence 35567889999999999988653
No 42
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=72.09 E-value=11 Score=21.14 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=19.0
Q ss_pred eEEEEeCccccCCEEEEEECCCCcEEEE
Q 039648 208 AFFIESNSRIYGGCLFLHEHRTKEIKNL 235 (254)
Q Consensus 208 ~i~l~~~~~~~~~~~~~yd~~t~~~~~~ 235 (254)
.+++... ++.++++|.+|++..+-
T Consensus 2 ~v~~~~~----~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTP----DGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETT----TSEEEEEETTTTSEEEE
T ss_pred EEEEeCC----CCEEEEEECCCCCEEEe
Confidence 4566644 78999999999988765
No 43
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=71.15 E-value=16 Score=33.74 Aligned_cols=68 Identities=13% Similarity=0.275 Sum_probs=37.4
Q ss_pred ccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCC--ce
Q 039648 25 NRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTN--SW 102 (254)
Q Consensus 25 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~--~W 102 (254)
.++.|+|-+|+||. +|.-....|.| ..++||..|. =||+++..+- ++ ....=+.|.+... .|
T Consensus 57 DELHvYNTatnqWf-~PavrGDiPpg-----cAA~GfvcdG----trilvFGGMv---EY---GkYsNdLYELQasRWeW 120 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDIPPG-----CAAFGFVCDG----TRILVFGGMV---EY---GKYSNDLYELQASRWEW 120 (830)
T ss_pred hhhhhhccccceee-cchhcCCCCCc-----hhhcceEecC----ceEEEEccEe---ee---ccccchHHHhhhhhhhH
Confidence 46899999999998 56543333322 2334444443 4566665431 00 1123356777664 57
Q ss_pred eecccc
Q 039648 103 REVHGH 108 (254)
Q Consensus 103 r~~~~~ 108 (254)
|++...
T Consensus 121 krlkp~ 126 (830)
T KOG4152|consen 121 KRLKPK 126 (830)
T ss_pred hhcCCC
Confidence 776533
No 44
>smart00612 Kelch Kelch domain.
Probab=70.60 E-value=5.1 Score=23.06 Aligned_cols=20 Identities=20% Similarity=0.580 Sum_probs=16.8
Q ss_pred cEEEEcCcccccccCCCCCC
Q 039648 26 RLTIWNPATREFRNLPNYKY 45 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~ 45 (254)
.+.++||.|.+|..+|+.+.
T Consensus 16 ~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 16 SVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred eEEEECCCCCeEccCCCCCC
Confidence 35889999999999997654
No 45
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=70.47 E-value=63 Score=27.03 Aligned_cols=120 Identities=7% Similarity=0.142 Sum_probs=68.0
Q ss_pred ceEEEE-EEEEEEEecCCCceEEEEEECCCccee-EecCCCCCC-----------ceeEEEEeCCeEEEEec-CC-CCEE
Q 039648 110 LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFE-EIKIPPHVN-----------YYSSISLYEDSLSIVIP-DA-EQCF 174 (254)
Q Consensus 110 ~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~-~i~~P~~~~-----------~~~~l~~~~g~L~~~~~-~~-~~~~ 174 (254)
..|.-| ++|+-.... ..|+.||+.+++.. ...||.... ....|++-+.-|-++-. .. ...+
T Consensus 73 G~vVYngslYY~~~~s----~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~i 148 (250)
T PF02191_consen 73 GHVVYNGSLYYNKYNS----RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNI 148 (250)
T ss_pred CeEEECCcEEEEecCC----ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcE
Confidence 345667 999876532 47999999999888 778887542 33577777777777663 22 2357
Q ss_pred EEEEECC-----CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccc-cCCEEEEEECCCCcEEEEEEc
Q 039648 175 EIWVMND-----NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRI-YGGCLFLHEHRTKEIKNLQVT 238 (254)
Q Consensus 175 ~IW~l~~-----~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~-~~~~~~~yd~~t~~~~~~~~~ 238 (254)
.|=.|+. .+.|.--+ +. ..+.. ++--.|.++....... ...-.++||+.+++-+.+.+.
T Consensus 149 vvskld~~tL~v~~tw~T~~--~k-~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 149 VVSKLDPETLSVEQTWNTSY--PK-RSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred EEEeeCcccCceEEEEEecc--Cc-hhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 7777775 34554321 11 11111 1122333433322110 122346777777776666553
No 46
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=69.24 E-value=77 Score=27.58 Aligned_cols=106 Identities=11% Similarity=0.233 Sum_probs=64.6
Q ss_pred eEEEEEECCCcc--ee---EecCCCCCCceeEEEEe-CCeEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCc-----
Q 039648 129 KVILSFHMDNEV--FE---EIKIPPHVNYYSSISLY-EDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFN----- 196 (254)
Q Consensus 129 ~~IvsfD~~~e~--~~---~i~~P~~~~~~~~l~~~-~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~----- 196 (254)
..|..|+++.+. .. .+.+|... ....+.-. +|..+++.......+.++.++. ...++...+++..+.
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 477888877665 43 34566654 33333333 5555555545688999999994 568888887775421
Q ss_pred -ceeeEEEEeCCeEEEEeCccccCCEEEEEEC--CCCcEEEEEE
Q 039648 197 -FRINFGFWKNDAFFIESNSRIYGGCLFLHEH--RTKEIKNLQV 237 (254)
Q Consensus 197 -~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~--~t~~~~~~~~ 237 (254)
...-+.+..+|+.++.... ....+..|++ ++++++.++.
T Consensus 245 ~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTTTTTEEEEEE
T ss_pred CCceeEEEecCCCEEEEEec--cCCEEEEEEEecCCCceEEEEE
Confidence 1234556778875555442 2678889987 5567877643
No 47
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=66.56 E-value=65 Score=25.73 Aligned_cols=130 Identities=9% Similarity=0.082 Sum_probs=70.4
Q ss_pred eEEEEEccCC--ceeecccc--C----ceEEEE-EEEEEEEecCCCceEEEEEECCCcce-eEecCCCCCCceeEEEEeC
Q 039648 91 NVQVYGFRTN--SWREVHGH--Q----LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVF-EEIKIPPHVNYYSSISLYE 160 (254)
Q Consensus 91 ~~~Vys~~~~--~Wr~~~~~--p----~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~-~~i~~P~~~~~~~~l~~~~ 160 (254)
.+..++..++ .|+.--.. . .++..+ .+|-.. . ...|.++|..+++- -...+|... .......+
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-~----~~~l~~~d~~tG~~~W~~~~~~~~--~~~~~~~~ 76 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-G----DGNLYALDAKTGKVLWRFDLPGPI--SGAPVVDG 76 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-T----TSEEEEEETTTSEEEEEEECSSCG--GSGEEEET
T ss_pred EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-C----CCEEEEEECCCCCEEEEeeccccc--cceeeecc
Confidence 3456666665 38763211 1 122234 665442 1 24799999866632 334445443 22247778
Q ss_pred CeEEEEecCCCCEEEEEEEC--C-CcceEE-EEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCcEEEE
Q 039648 161 DSLSIVIPDAEQCFEIWVMN--D-NKCWAK-HLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNL 235 (254)
Q Consensus 161 g~L~~~~~~~~~~~~IW~l~--~-~~~W~~-~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~~~ 235 (254)
+.+.+... .. .|+.++ + +..|+. ...-+.......+.....++.+++... ...++.+|+++++..+-
T Consensus 77 ~~v~v~~~--~~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 77 GRVYVGTS--DG--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWK 147 (238)
T ss_dssp TEEEEEET--TS--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEE
T ss_pred cccccccc--ee--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEE
Confidence 88877662 22 566665 3 667884 433222221111122223566777775 68999999999977544
No 48
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=64.84 E-value=95 Score=27.01 Aligned_cols=141 Identities=13% Similarity=0.186 Sum_probs=77.8
Q ss_pred CeEEEEEccCCc--eeecc---cc----CceEEEE----EEEEEEEecCCCceEEEEEECC--CcceeEe----cCCCCC
Q 039648 90 PNVQVYGFRTNS--WREVH---GH----QLDRYFK----VCYWLVIADTRDLKVILSFHMD--NEVFEEI----KIPPHV 150 (254)
Q Consensus 90 ~~~~Vys~~~~~--Wr~~~---~~----p~~v~~~----~lyWl~~~~~~~~~~IvsfD~~--~e~~~~i----~~P~~~ 150 (254)
..+.+|+...+. ..... .+ |+.+.++ .+|-+ .+. ...|..|++. +.++..+ .+|...
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~-~e~---s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV-NEL---SNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE-ETT---TTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe-cCC---CCcEEEEeecccCCceeEEEEeeeccccc
Confidence 477888887654 43322 11 2344443 44443 332 2357777766 6666554 344433
Q ss_pred C---ceeEEEEe-CCeEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEE
Q 039648 151 N---YYSSISLY-EDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLH 225 (254)
Q Consensus 151 ~---~~~~l~~~-~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~y 225 (254)
. ....+... +|+..++.......+.++.++. .+.-+.+-.++......+-+.+..+|+.++.... .+..+..|
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~--~s~~v~vf 319 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ--DSNTVSVF 319 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET--TTTEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec--CCCeEEEE
Confidence 2 23444444 4554444445688999999965 4556665555542223455667778886655442 15667766
Q ss_pred --ECCCCcEEEEE
Q 039648 226 --EHRTKEIKNLQ 236 (254)
Q Consensus 226 --d~~t~~~~~~~ 236 (254)
|.+++.++...
T Consensus 320 ~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 320 DIDPDTGKLTPVG 332 (345)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEeCCCCcEEEec
Confidence 56788888764
No 49
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=63.34 E-value=7.4 Score=23.23 Aligned_cols=20 Identities=5% Similarity=0.175 Sum_probs=16.8
Q ss_pred cEEEEcCcccccccCCCCCC
Q 039648 26 RLTIWNPATREFRNLPNYKY 45 (254)
Q Consensus 26 ~~~V~NP~T~~~~~LP~~~~ 45 (254)
++++.||.|++|.+++..|.
T Consensus 20 d~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 20 DVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred CEEEEECCCCEEEECCCCCC
Confidence 56999999999999966554
No 50
>smart00284 OLF Olfactomedin-like domains.
Probab=56.66 E-value=1.2e+02 Score=25.51 Aligned_cols=120 Identities=12% Similarity=0.152 Sum_probs=68.7
Q ss_pred ceEEEE-EEEEEEEecCCCceEEEEEECCCccee-EecCCCCC-C----------ceeEEEEeCCeEEEEec--CCCCEE
Q 039648 110 LDRYFK-VCYWLVIADTRDLKVILSFHMDNEVFE-EIKIPPHV-N----------YYSSISLYEDSLSIVIP--DAEQCF 174 (254)
Q Consensus 110 ~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e~~~-~i~~P~~~-~----------~~~~l~~~~g~L~~~~~--~~~~~~ 174 (254)
..|.-| ++|+-.... ..|+.||+.+++.. .-.+|... + ....|++-+.-|-++-. .....|
T Consensus 78 G~VVYngslYY~~~~s----~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i 153 (255)
T smart00284 78 GVVVYNGSLYFNKFNS----HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI 153 (255)
T ss_pred cEEEECceEEEEecCC----ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE
Confidence 356777 999954432 46999999999886 34577532 1 34678888888877652 234678
Q ss_pred EEEEECC-----CcceEEEEEecCCCcceeeEEEEeCCeEEEEeC-ccccCCEEEEEECCCCcEEEEEEc
Q 039648 175 EIWVMND-----NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESN-SRIYGGCLFLHEHRTKEIKNLQVT 238 (254)
Q Consensus 175 ~IW~l~~-----~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~-~~~~~~~~~~yd~~t~~~~~~~~~ 238 (254)
.|=+|+. .+.|.--+.-. . +. -++--.|.+..... ......-.++||..|++-+.+.+.
T Consensus 154 vvSkLnp~tL~ve~tW~T~~~k~--s-a~--naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 154 VISKLNPATLTIENTWITTYNKR--S-AS--NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred EEEeeCcccceEEEEEEcCCCcc--c-cc--ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 8888886 34555421111 1 11 11112334433321 111133457888888776665543
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=55.58 E-value=1.1e+02 Score=24.70 Aligned_cols=66 Identities=8% Similarity=0.207 Sum_probs=38.9
Q ss_pred CCEEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccc-cC-CEEEEEECCCCcEEE-EEEc
Q 039648 171 EQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRI-YG-GCLFLHEHRTKEIKN-LQVT 238 (254)
Q Consensus 171 ~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~-~~-~~~~~yd~~t~~~~~-~~~~ 238 (254)
...++|..++. .+|......++....... ++.-+|.+........ .. ..++.||+++++++. +..+
T Consensus 69 ~~~~~Vys~~~-~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 69 QSEHQVYTLGS-NSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred CccEEEEEeCC-CCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 35778888885 789987532221111122 5555777654432100 01 269999999999994 6554
No 52
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=54.29 E-value=41 Score=24.57 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=30.0
Q ss_pred eCCeEEEEeCc-cccCCEEEEEECCCCcEEEEEEc--Cc-----eEEEEeeeccc
Q 039648 205 KNDAFFIESNS-RIYGGCLFLHEHRTKEIKNLQVT--NP-----QFVVIYKESLM 251 (254)
Q Consensus 205 ~~g~i~l~~~~-~~~~~~~~~yd~~t~~~~~~~~~--~~-----~~~~~y~eSLv 251 (254)
-+|.++..... ......+++||+++++++.+..+ .. .....|..+|.
T Consensus 4 inGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~ 58 (129)
T PF08268_consen 4 INGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLA 58 (129)
T ss_pred ECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEE
Confidence 35655444321 11257899999999999999885 11 45666666654
No 53
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=52.82 E-value=33 Score=24.70 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=28.5
Q ss_pred cEEEEcCccc-ccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEe
Q 039648 26 RLTIWNPATR-EFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVH 76 (254)
Q Consensus 26 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~ 76 (254)
+.++.+|.|| .|. |..+. ...+-+-+|+..+.|+||.+.
T Consensus 12 ~V~~yd~~tKk~Wv--Ps~~~----------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 12 HVFQIDPKTKKNWI--PASKH----------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EEEEECCCCcceeE--eCCCC----------ceeEEEEecCCCcEEEEEEec
Confidence 4699999996 776 33321 235778889999999999863
No 54
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=52.18 E-value=1.6e+02 Score=27.84 Aligned_cols=97 Identities=10% Similarity=0.113 Sum_probs=52.4
Q ss_pred EEEEEECCCccee-EecCCCCCCceeEEEEeCCeEEEEecCCCCEEEEEEECCCcceEEEE---EecCCCcc-----eee
Q 039648 130 VILSFHMDNEVFE-EIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHL---TLGPFFNF-----RIN 200 (254)
Q Consensus 130 ~IvsfD~~~e~~~-~i~~P~~~~~~~~l~~~~g~L~~~~~~~~~~~~IW~l~~~~~W~~~~---~i~~~~~~-----~~~ 200 (254)
.|..||++.+.|= .+..-........+-+++|-|++= .....++.|-...++.=..+. +++..++. ...
T Consensus 156 evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~G--t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTa 233 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACG--TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTA 233 (703)
T ss_pred ceEEEEccccccccccccccccceeeeecCccceEEec--ccCceEEEecchhhhhheeeecccccCCCccccccCcceE
Confidence 5889999999872 222211110345666677766643 347789999888622111111 11111111 233
Q ss_pred EEEEeCCe-EEEEeCccccCCEEEEEECCCCcE
Q 039648 201 FGFWKNDA-FFIESNSRIYGGCLFLHEHRTKEI 232 (254)
Q Consensus 201 ~~~~~~g~-i~l~~~~~~~~~~~~~yd~~t~~~ 232 (254)
+.+.++|- +=+-+. .+.+++||+++.+-
T Consensus 234 l~F~d~gL~~aVGts----~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 234 LKFRDDGLHVAVGTS----TGSVLIYDLRASKP 262 (703)
T ss_pred EEecCCceeEEeecc----CCcEEEEEcccCCc
Confidence 44455553 223333 68899999997654
No 55
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=50.63 E-value=1.4e+02 Score=24.34 Aligned_cols=194 Identities=9% Similarity=0.058 Sum_probs=101.1
Q ss_pred eccCceEEEEEcCCccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcC
Q 039648 11 GYHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVP 90 (254)
Q Consensus 11 ~scnGLlcl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~ 90 (254)
...+|-|...+....+++.++|.+++...++.+. ..|+.++...+. ++.. . ..
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-------------~~G~~~~~~~g~--l~v~-~-----------~~ 60 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-------------PNGMAFDRPDGR--LYVA-D-----------SG 60 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-------------EEEEEEECTTSE--EEEE-E-----------TT
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-------------CceEEEEccCCE--EEEE-E-----------cC
Confidence 3446777777655456899999999987654432 357777733322 2221 1 11
Q ss_pred eEEEEEccCCceeecccc---------CceEEEE---EEEEEEEecC-C--Cc--eEEEEEECCCcceeEecCCCCCCce
Q 039648 91 NVQVYGFRTNSWREVHGH---------QLDRYFK---VCYWLVIADT-R--DL--KVILSFHMDNEVFEEIKIPPHVNYY 153 (254)
Q Consensus 91 ~~~Vys~~~~~Wr~~~~~---------p~~v~~~---~lyWl~~~~~-~--~~--~~IvsfD~~~e~~~~i~~P~~~~~~ 153 (254)
...+++..++.++.+... |..+.++ .+ |.+.... . .. ..|..+|.+ ++.+.+.-. ....
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~l-y~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~p 136 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNL-YVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFP 136 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-E-EEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSE
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCE-EEEecCCCccccccccceEEECCC-CeEEEEecC--cccc
Confidence 335567777777654332 1334444 54 4444332 1 11 579999999 444333110 1011
Q ss_pred eEEEEe-CC-eEEEEecCCCCEEEEEEECC-CcceEEEEEe-cCCCcceee--EEEEeCCeEEEEeCccccCCEEEEEEC
Q 039648 154 SSISLY-ED-SLSIVIPDAEQCFEIWVMND-NKCWAKHLTL-GPFFNFRIN--FGFWKNDAFFIESNSRIYGGCLFLHEH 227 (254)
Q Consensus 154 ~~l~~~-~g-~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i-~~~~~~~~~--~~~~~~g~i~l~~~~~~~~~~~~~yd~ 227 (254)
-.|+.. +| .|.++. .....+....++. ...+.....+ +.......| +++..+|.|++.... ..++..||+
T Consensus 137 NGi~~s~dg~~lyv~d-s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~---~~~I~~~~p 212 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVAD-SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG---GGRIVVFDP 212 (246)
T ss_dssp EEEEEETTSSEEEEEE-TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---TTEEEEEET
T ss_pred cceEECCcchheeecc-cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---CCEEEEECC
Confidence 223222 44 455554 3344433333433 3335544333 221212234 555678888887653 689999999
Q ss_pred CCCcEEEEEEcC
Q 039648 228 RTKEIKNLQVTN 239 (254)
Q Consensus 228 ~t~~~~~~~~~~ 239 (254)
+.+.++.+.++.
T Consensus 213 ~G~~~~~i~~p~ 224 (246)
T PF08450_consen 213 DGKLLREIELPV 224 (246)
T ss_dssp TSCEEEEEE-SS
T ss_pred CccEEEEEcCCC
Confidence 977788787773
No 56
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=50.08 E-value=1.2e+02 Score=29.73 Aligned_cols=60 Identities=18% Similarity=0.412 Sum_probs=40.7
Q ss_pred CCCCEEEEEEECC-------CcceEEEEEecCCCc-ceeeEEEEeCCeEEEEeCccccCCEEEEEECCC-CcEE
Q 039648 169 DAEQCFEIWVMND-------NKCWAKHLTLGPFFN-FRINFGFWKNDAFFIESNSRIYGGCLFLHEHRT-KEIK 233 (254)
Q Consensus 169 ~~~~~~~IW~l~~-------~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t-~~~~ 233 (254)
+....+.||++.+ +..|+.+. |..... -....++.+||.++.... +..+..||..+ ++++
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~-i~sy~k~~i~a~~fs~dGslla~s~----~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKA-IGSYHKTPITALCFSQDGSLLAVSF----DDTITIWDYDTKNELL 544 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEee-eeccccCcccchhhcCCCcEEEEec----CCEEEEecCCChhhhh
Confidence 3478899999954 57799865 332110 123345567888887776 78999999998 4443
No 57
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=48.46 E-value=1.2e+02 Score=25.91 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=44.1
Q ss_pred eEEEEe-CCeEEEEecCCCCEEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCc
Q 039648 154 SSISLY-EDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKE 231 (254)
Q Consensus 154 ~~l~~~-~g~L~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~ 231 (254)
..+... +|+||..+ .....+-+|-|++++. .+.++... ...-+++..+.-.+..-. +..+-++|++++.
T Consensus 196 ~t~~vSpDGslcasG-gkdg~~~LwdL~~~k~---lysl~a~~-~v~sl~fspnrywL~~at----~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASG-GKDGEAMLWDLNEGKN---LYSLEAFD-IVNSLCFSPNRYWLCAAT----ATSIKIWDLESKA 265 (315)
T ss_pred EEEEECCCCCEEecC-CCCceEEEEEccCCce---eEeccCCC-eEeeEEecCCceeEeecc----CCceEEEeccchh
Confidence 344444 88999886 4578899999998332 66666544 445566665543333222 4568888888774
No 58
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=45.50 E-value=57 Score=23.64 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=28.8
Q ss_pred EEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEe
Q 039648 27 LTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVH 76 (254)
Q Consensus 27 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~ 76 (254)
..+.||.||.| ||..+.. . ....+.+-+|+..+.|.|+.-.
T Consensus 11 Vm~~d~~tk~W--~P~~~~~--~-----~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 11 VMVYDDSNKKW--VPAGGGS--Q-----GFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred eeEEcCCCCcE--EcCCCCC--C-----CcceEEEEEcCCCCEEEEEEee
Confidence 48889999985 5554321 1 1345777788989999999864
No 59
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=43.90 E-value=1.8e+02 Score=23.73 Aligned_cols=104 Identities=9% Similarity=0.064 Sum_probs=54.7
Q ss_pred EEEEEECCCcce-eEecC--CCCCC---ceeEEE-EeCCeEEEEecCCCCEEEEEEECCCcceEEEEEecCCCcceeeEE
Q 039648 130 VILSFHMDNEVF-EEIKI--PPHVN---YYSSIS-LYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFG 202 (254)
Q Consensus 130 ~IvsfD~~~e~~-~~i~~--P~~~~---~~~~l~-~~~g~L~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~ 202 (254)
.|..+|+++.+. +.+.. |.... ....+. .-+|...++.......+.||-++. |.....+.... ....+.
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~-~~~~~~ 255 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT---YEVLDYLLVGQ-RVWQLA 255 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEeCC-CcceEE
Confidence 578889887643 33322 11100 111222 234544444423355788887654 44443332221 223455
Q ss_pred EEeCCeEEEEeCccccCCEEEEEECCCCcE-EEEEEcC
Q 039648 203 FWKNDAFFIESNSRIYGGCLFLHEHRTKEI-KNLQVTN 239 (254)
Q Consensus 203 ~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~-~~~~~~~ 239 (254)
+..+|+.++.... .++.+.+||+++++. +.+.+.+
T Consensus 256 ~~~~g~~l~~~~~--~~~~i~v~d~~~~~~~~~~~~~~ 291 (300)
T TIGR03866 256 FTPDEKYLLTTNG--VSNDVSVIDVAALKVIKSIKVGR 291 (300)
T ss_pred ECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEccc
Confidence 6667776555421 167899999999884 6666543
No 60
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=43.63 E-value=47 Score=18.59 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=15.4
Q ss_pred eCCeEEEEeCccccCCEEEEEECCC
Q 039648 205 KNDAFFIESNSRIYGGCLFLHEHRT 229 (254)
Q Consensus 205 ~~g~i~l~~~~~~~~~~~~~yd~~t 229 (254)
.+|.+++... ++.++++|.+|
T Consensus 20 ~~g~vyv~~~----dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTG----DGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-T----TSEEEEEETT-
T ss_pred ECCEEEEEcC----CCEEEEEeCCC
Confidence 3667777777 78999999875
No 61
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=42.62 E-value=2.2e+02 Score=24.55 Aligned_cols=116 Identities=7% Similarity=-0.048 Sum_probs=66.7
Q ss_pred eEEEE---EEEEEEEecCCCceEEEEEECCCcceeEecCCCCCCceeEEEEeCCeEEEEecCCCCEEEEEEECCCcceEE
Q 039648 111 DRYFK---VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAK 187 (254)
Q Consensus 111 ~v~~~---~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~~~~~~l~~~~g~L~~~~~~~~~~~~IW~l~~~~~W~~ 187 (254)
+++.. .|+|....+ ..|+.+|.++..-+.+..|... ....+..-+|.|....+ .+.++..+....|+.
T Consensus 30 P~w~~~~~~L~w~DI~~----~~i~r~~~~~g~~~~~~~p~~~-~~~~~~d~~g~Lv~~~~----g~~~~~~~~~~~~t~ 100 (307)
T COG3386 30 PVWDPDRGALLWVDILG----GRIHRLDPETGKKRVFPSPGGF-SSGALIDAGGRLIACEH----GVRLLDPDTGGKITL 100 (307)
T ss_pred ccCcCCCCEEEEEeCCC----CeEEEecCCcCceEEEECCCCc-ccceeecCCCeEEEEcc----ccEEEeccCCceeEE
Confidence 45555 688876544 3799999999999999999875 33444455555554442 233333333455555
Q ss_pred EEEecCCCccee--eEEEEeCCeEEEEeCc-----c---ccCCEEEEEECCCCcEEEE
Q 039648 188 HLTLGPFFNFRI--NFGFWKNDAFFIESNS-----R---IYGGCLFLHEHRTKEIKNL 235 (254)
Q Consensus 188 ~~~i~~~~~~~~--~~~~~~~g~i~l~~~~-----~---~~~~~~~~yd~~t~~~~~~ 235 (254)
+..........+ ...+..+|.+.+.... . ...+.++.+|+.+++.+.+
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 555443211122 2344556667666543 1 1234689999865554443
No 62
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=42.25 E-value=1.8e+02 Score=23.33 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=37.7
Q ss_pred CEEEEEEECC-CcceEEEEEecCCCcceee-EEEEeCC-eEEEEeC----ccccCCEEEEEECCCCcEEEEE
Q 039648 172 QCFEIWVMND-NKCWAKHLTLGPFFNFRIN-FGFWKND-AFFIESN----SRIYGGCLFLHEHRTKEIKNLQ 236 (254)
Q Consensus 172 ~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~-~~~~~~g-~i~l~~~----~~~~~~~~~~yd~~t~~~~~~~ 236 (254)
.--+||..+. ..+|.. ..+++...-..| ...|-|+ .|++..+ .+..++.|+.||+.|+++..+.
T Consensus 86 giGkIYIkn~~~~~~~~-L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWS-LQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred cceeEEEEecCCCceEE-EEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 3457888886 566633 335544222233 2335444 4555433 2345788999999999988763
No 63
>PLN02772 guanylate kinase
Probab=41.53 E-value=1.8e+02 Score=26.21 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=44.6
Q ss_pred eEEEE-EEEEEEEecCC--CceEEEEEECCCcceeEec----CCCCCCceeEEEEeCCeEEEEecCCCCEEEEEEECC
Q 039648 111 DRYFK-VCYWLVIADTR--DLKVILSFHMDNEVFEEIK----IPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMND 181 (254)
Q Consensus 111 ~v~~~-~lyWl~~~~~~--~~~~IvsfD~~~e~~~~i~----~P~~~~~~~~l~~~~g~L~~~~~~~~~~~~IW~l~~ 181 (254)
.+.++ .+|-+...... ....+-.||..+.+|..-. .|...........-+++|.++.......=+||-|+=
T Consensus 30 av~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~ 107 (398)
T PLN02772 30 SVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEV 107 (398)
T ss_pred eEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEc
Confidence 45555 66655432222 2347899999999998642 233332444555558899888854455678999983
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=41.07 E-value=2.5e+02 Score=24.60 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=56.4
Q ss_pred EEEEEECCCcceeEecCCCCCC--ceeEEEEeCCeEEEEecC--C-CC------EEEEEEEC------C-CcceEEEEEe
Q 039648 130 VILSFHMDNEVFEEIKIPPHVN--YYSSISLYEDSLSIVIPD--A-EQ------CFEIWVMN------D-NKCWAKHLTL 191 (254)
Q Consensus 130 ~IvsfD~~~e~~~~i~~P~~~~--~~~~l~~~~g~L~~~~~~--~-~~------~~~IW~l~------~-~~~W~~~~~i 191 (254)
..+.||.++...... |.... ........+|+|.+.... . .. .+++-... . ...|+-.. +
T Consensus 87 ~t~vyDt~t~av~~~--P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~-L 163 (342)
T PF07893_consen 87 RTLVYDTDTRAVATG--PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS-L 163 (342)
T ss_pred CeEEEECCCCeEecc--CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-C
Confidence 477899888877644 44322 233344558889888831 1 11 55555443 1 45555543 5
Q ss_pred cCCC--cc-------eeeEEEEeCCeEEEEeCccccCC--EEEEEECCCCcEEEE
Q 039648 192 GPFF--NF-------RINFGFWKNDAFFIESNSRIYGG--CLFLHEHRTKEIKNL 235 (254)
Q Consensus 192 ~~~~--~~-------~~~~~~~~~g~i~l~~~~~~~~~--~~~~yd~~t~~~~~~ 235 (254)
++.+ .. ..-..+.++..|++... +. ..++||.++.+|+++
T Consensus 164 P~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~----~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 164 PPPPFVRDRRYSDYRITSYAVVDGRTIFVSVN----GRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred CCCCccccCCcccceEEEEEEecCCeEEEEec----CCceEEEEEEcCCcceeec
Confidence 4322 11 11122332335777665 34 799999999999987
No 65
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=40.31 E-value=72 Score=18.23 Aligned_cols=40 Identities=5% Similarity=0.111 Sum_probs=30.0
Q ss_pred eeEEEEeCCeEEEEec--C-CCCEEEEEEECC-CcceEEEEEec
Q 039648 153 YSSISLYEDSLSIVIP--D-AEQCFEIWVMND-NKCWAKHLTLG 192 (254)
Q Consensus 153 ~~~l~~~~g~L~~~~~--~-~~~~~~IW~l~~-~~~W~~~~~i~ 192 (254)
....+..++.|.++++ . ....-.+|+++- ...|+++-.|+
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 3567889999999993 2 355667777776 78999987764
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.96 E-value=1.1e+02 Score=30.67 Aligned_cols=69 Identities=12% Similarity=0.361 Sum_probs=39.6
Q ss_pred EeCCeEEEEe-cCCCCEEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCC
Q 039648 158 LYEDSLSIVI-PDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTK 230 (254)
Q Consensus 158 ~~~g~L~~~~-~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~ 230 (254)
..++.|=++. ..+++-+.+|.|.+.+.|+.--.=+....+...++ ...-++++..+. +..+-+||+..+
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlf-hp~q~lIlSnsE---DksirVwDm~kR 282 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLF-HPHQDLILSNSE---DKSIRVWDMTKR 282 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEe-cCccceeEecCC---CccEEEEecccc
Confidence 3444554444 45688999999999777876322222211222222 223456666652 667778888654
No 67
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=39.33 E-value=3.3e+02 Score=25.48 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=18.2
Q ss_pred ceEEEEEECCCcceeEecCCCCC
Q 039648 128 LKVILSFHMDNEVFEEIKIPPHV 150 (254)
Q Consensus 128 ~~~IvsfD~~~e~~~~i~~P~~~ 150 (254)
.+.|++-|-.-.+-+.+++|+..
T Consensus 307 DRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 307 DRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred cceEEeccccccccccccCchhc
Confidence 46888888666677888999875
No 68
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=37.97 E-value=1.4e+02 Score=28.15 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=33.8
Q ss_pred ccCceEEEEEcCCccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEE
Q 039648 12 YHDGLFCIMQSSTNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLF 74 (254)
Q Consensus 12 scnGLlcl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~ 74 (254)
..+|-++.+.+...++.||||..++.+.+= ..++ ..+.+..-|-|.+++=-|+.
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgH-------taNIFsvKFvP~tnnriv~s 112 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLLHSI--STGH-------TANIFSVKFVPYTNNRIVLS 112 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcceeeee--eccc-------ccceeEEeeeccCCCeEEEe
Confidence 568888888887788999999966654321 1211 23344455567776544443
No 69
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=36.38 E-value=3e+02 Score=24.25 Aligned_cols=115 Identities=12% Similarity=0.150 Sum_probs=63.1
Q ss_pred ceEEEE---EEEEEEEecCCCceEEEEEECCCcceeEe---cCCCCCC--------ceeEEEE--eCCeEEEEec-----
Q 039648 110 LDRYFK---VCYWLVIADTRDLKVILSFHMDNEVFEEI---KIPPHVN--------YYSSISL--YEDSLSIVIP----- 168 (254)
Q Consensus 110 ~~v~~~---~lyWl~~~~~~~~~~IvsfD~~~e~~~~i---~~P~~~~--------~~~~l~~--~~g~L~~~~~----- 168 (254)
.+.+.+ .+||++..+ .|...|++.+.-... ++-.... .+..++. -.++|.+.-+
T Consensus 188 ~~~~~~~~~~~~F~Sy~G-----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g 262 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG-----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEG 262 (342)
T ss_dssp --EEETTTTEEEEEBTTS-----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT
T ss_pred ccceECCCCeEEEEecCC-----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCC
Confidence 355554 577766544 689999987754332 2211110 1122222 3567776552
Q ss_pred -CCCCEEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCe-EEEE-eCccccCCEEEEEECCCCcEEE
Q 039648 169 -DAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDA-FFIE-SNSRIYGGCLFLHEHRTKEIKN 234 (254)
Q Consensus 169 -~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~l~-~~~~~~~~~~~~yd~~t~~~~~ 234 (254)
.+...=+||+++- ..=.++.+++... -..-+.+.++++ +++. ... +..+.+||..|++..+
T Consensus 263 sHKdpgteVWv~D~-~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~---~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 263 SHKDPGTEVWVYDL-KTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAG---DGTLDVYDAATGKLVR 326 (342)
T ss_dssp -TTS-EEEEEEEET-TTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETT---TTEEEEEETTT--EEE
T ss_pred CccCCceEEEEEEC-CCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCC---CCeEEEEeCcCCcEEe
Confidence 3567889999996 3334666666322 112456677776 5554 332 5789999999986643
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=34.35 E-value=2.5e+02 Score=22.72 Aligned_cols=109 Identities=11% Similarity=0.063 Sum_probs=64.3
Q ss_pred EEEEEEEecCCCceEEEEEECCCcceeEecCCCCCCceeEEEEeCCeEEEEecCCCCEEEEEEECCCcceEEEEEecCCC
Q 039648 116 VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFF 195 (254)
Q Consensus 116 ~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~~~~~~l~~~~g~L~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~ 195 (254)
.|||..... ..|..+|.++++.+.+.+|.. ....+..-+|.|.+... ..+.+.-++ ..+++.+.......
T Consensus 13 ~l~~~D~~~----~~i~~~~~~~~~~~~~~~~~~--~G~~~~~~~g~l~v~~~---~~~~~~d~~-~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 13 RLYWVDIPG----GRIYRVDPDTGEVEVIDLPGP--NGMAFDRPDGRLYVADS---GGIAVVDPD-TGKVTVLADLPDGG 82 (246)
T ss_dssp EEEEEETTT----TEEEEEETTTTEEEEEESSSE--EEEEEECTTSEEEEEET---TCEEEEETT-TTEEEEEEEEETTC
T ss_pred EEEEEEcCC----CEEEEEECCCCeEEEEecCCC--ceEEEEccCCEEEEEEc---CceEEEecC-CCcEEEEeeccCCC
Confidence 899985332 479999999999988888862 11222223677776663 233333222 57888888774222
Q ss_pred -cceee--EEEEeCCeEEEEeCccc---cC--CEEEEEECCCCcEEEE
Q 039648 196 -NFRIN--FGFWKNDAFFIESNSRI---YG--GCLFLHEHRTKEIKNL 235 (254)
Q Consensus 196 -~~~~~--~~~~~~g~i~l~~~~~~---~~--~~~~~yd~~t~~~~~~ 235 (254)
....| +.+..+|.+++...... .. +.++.+++. ++.+.+
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 23344 55667888777654210 01 568888888 555544
No 71
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=33.92 E-value=43 Score=23.15 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=14.5
Q ss_pred CCEEEEEECCCCcEEEE
Q 039648 219 GGCLFLHEHRTKEIKNL 235 (254)
Q Consensus 219 ~~~~~~yd~~t~~~~~~ 235 (254)
.++++.||++|++.+.+
T Consensus 36 ~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVL 52 (89)
T ss_dssp -EEEEEEETTTTEEEEE
T ss_pred CcCEEEEECCCCeEEEe
Confidence 47899999999998876
No 72
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=33.77 E-value=97 Score=22.78 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=17.9
Q ss_pred CCEEEEEECCCCcEEEEEEcCc
Q 039648 219 GGCLFLHEHRTKEIKNLQVTNP 240 (254)
Q Consensus 219 ~~~~~~yd~~t~~~~~~~~~~~ 240 (254)
.-.++.||.++++|++.++.|.
T Consensus 28 ~v~vY~f~~~~~~W~K~~iEG~ 49 (122)
T PF06058_consen 28 HVVVYKFDHETNEWEKTDIEGT 49 (122)
T ss_dssp EEEEEEEETTTTEEEEEEEEEE
T ss_pred eEEEEeecCCCCcEeecCcEee
Confidence 3456777799999999999887
No 73
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=33.25 E-value=3.4e+02 Score=23.92 Aligned_cols=107 Identities=8% Similarity=0.150 Sum_probs=58.0
Q ss_pred ceEEEE-EEEEEEEecCCCceEEEEEECCCc--ceeEecCCCCCC---------ceeEEEEeCCeEEEEecCCCCEEEEE
Q 039648 110 LDRYFK-VCYWLVIADTRDLKVILSFHMDNE--VFEEIKIPPHVN---------YYSSISLYEDSLSIVIPDAEQCFEIW 177 (254)
Q Consensus 110 ~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e--~~~~i~~P~~~~---------~~~~l~~~~g~L~~~~~~~~~~~~IW 177 (254)
.|+..+ .+|-.... ..+.|+|.+++ .|+ .+++.... ........+|.+.+... .. .+.
T Consensus 64 sPvv~~~~vy~~~~~-----g~l~ald~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--~g--~l~ 133 (394)
T PRK11138 64 HPAVAYNKVYAADRA-----GLVKALDADTGKEIWS-VDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--KG--QVY 133 (394)
T ss_pred ccEEECCEEEEECCC-----CeEEEEECCCCcEeeE-EcCCCcccccccccccccccccEEECCEEEEEcC--CC--EEE
Confidence 356777 77765432 26999998755 443 33332110 11234556677665432 22 344
Q ss_pred EECC---CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCcEEEE
Q 039648 178 VMND---NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNL 235 (254)
Q Consensus 178 ~l~~---~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~~~ 235 (254)
.++. +..|+... +. .....|+- .++.+++... ++.++.+|.+|++..+-
T Consensus 134 ald~~tG~~~W~~~~--~~-~~~ssP~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~ 185 (394)
T PRK11138 134 ALNAEDGEVAWQTKV--AG-EALSRPVV--SDGLVLVHTS----NGMLQALNESDGAVKWT 185 (394)
T ss_pred EEECCCCCCcccccC--CC-ceecCCEE--ECCEEEEECC----CCEEEEEEccCCCEeee
Confidence 4442 56776642 21 11122322 2566776665 67899999999876643
No 74
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=32.56 E-value=3.1e+02 Score=23.28 Aligned_cols=69 Identities=4% Similarity=-0.090 Sum_probs=41.6
Q ss_pred EEEecCCCCEEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECC-CCcEEEE
Q 039648 164 SIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHR-TKEIKNL 235 (254)
Q Consensus 164 ~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~-t~~~~~~ 235 (254)
+++.......+.+|.+...++++.+.+++... -...+.+..+++.++.... ....+..|+.+ +++++.+
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~-~~~~l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~ 73 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVDVPG-QVQPMVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFA 73 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEecCC-CCccEEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEe
Confidence 34443447889999996456787777775322 2345666667775544321 15677788875 4455433
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=32.26 E-value=37 Score=29.87 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=21.3
Q ss_pred CCcCCcEEeccCceEEEEEcCCccEEEEcCcccccc
Q 039648 3 PQIHDKFVGYHDGLFCIMQSSTNRLTIWNPATREFR 38 (254)
Q Consensus 3 ~~~~~~i~~scnGLlcl~~~~~~~~~V~NP~T~~~~ 38 (254)
||.++.++.--.=+++.+.++. +.+|||.|++..
T Consensus 192 ~ct~G~f~pdGKr~~tgy~dgt--i~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 192 PCTCGEFIPDGKRILTGYDDGT--IIVWNPKTGQPL 225 (399)
T ss_pred CcccccccCCCceEEEEecCce--EEEEecCCCcee
Confidence 5566666665222445555554 599999998644
No 76
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=31.65 E-value=65 Score=29.11 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=70.5
Q ss_pred CceEEEEEcC----CccEEEEcCcccccccCCCCCCCC---CCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccC
Q 039648 14 DGLFCIMQSS----TNRLTIWNPATREFRNLPNYKYCN---SSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRY 86 (254)
Q Consensus 14 nGLlcl~~~~----~~~~~V~NP~T~~~~~LP~~~~~~---~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~ 86 (254)
.-|++|.... ..+|+|+|..|++..+|......+ |.+ ....+-=||--.+++||++-....
T Consensus 238 G~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPed----qGiIFpgGYyLqtGe~K~Fd~~~~-------- 305 (448)
T PF12458_consen 238 GNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPED----QGIIFPGGYYLQTGEYKTFDTDMD-------- 305 (448)
T ss_pred CcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCcc----CceEccCceEeccCCceeecccCC--------
Confidence 4588887643 347899999999999987654322 211 111222255557788888764221
Q ss_pred CCcCeEEEEEccCCceeeccccC-ceEEEEEEEEEEEecCCCceEEEEEECCCcceeEecCCCCCCceeEEEEeCCeEEE
Q 039648 87 GKVPNVQVYGFRTNSWREVHGHQ-LDRYFKVCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSI 165 (254)
Q Consensus 87 ~~~~~~~Vys~~~~~Wr~~~~~p-~~v~~~~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~~~~~~l~~~~g~L~~ 165 (254)
.+..+ |.+.++. .. .||-. .........++++|+-+.+. .-|..++ ..-.--+|.|++
T Consensus 306 --~l~F~---------r~vrSPNGED----vLYvF-~~~~~g~~~Ll~YN~I~k~v---~tPi~ch--G~alf~DG~l~~ 364 (448)
T PF12458_consen 306 --GLEFE---------RKVRSPNGED----VLYVF-YAREEGRYLLLPYNLIRKEV---ATPIICH--GYALFEDGRLVY 364 (448)
T ss_pred --CceEE---------EEecCCCCce----EEEEE-EECCCCcEEEEechhhhhhh---cCCeecc--ceeEecCCEEEE
Confidence 01111 1222220 11 33322 12223456788888766543 3444332 122234788888
Q ss_pred EecC-----CCCEEEEEEEC
Q 039648 166 VIPD-----AEQCFEIWVMN 180 (254)
Q Consensus 166 ~~~~-----~~~~~~IW~l~ 180 (254)
.... ....++||.--
T Consensus 365 fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 365 FRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred EecCCCCcceeccceeecCC
Confidence 7731 23468888854
No 77
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.90 E-value=5.5e+02 Score=25.33 Aligned_cols=100 Identities=8% Similarity=0.205 Sum_probs=58.0
Q ss_pred EEEEEECCCc-ceeEecCCCCCCceeEEEEe-CCeEEEEecCCCCEEEEEEECCCcceEEEEEecCCCcceeeEE---EE
Q 039648 130 VILSFHMDNE-VFEEIKIPPHVNYYSSISLY-EDSLSIVIPDAEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFG---FW 204 (254)
Q Consensus 130 ~IvsfD~~~e-~~~~i~~P~~~~~~~~l~~~-~g~L~~~~~~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~---~~ 204 (254)
.+-|+|+.+- -|+.+..|...+ ...+++- .|.|.+++.-+.-.|-||-++- + .-++.+.+.+.|+. +.
T Consensus 415 tVRAwDlkRYrNfRTft~P~p~Q-fscvavD~sGelV~AG~~d~F~IfvWS~qT-G-----qllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPEPIQ-FSCVAVDPSGELVCAGAQDSFEIFVWSVQT-G-----QLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred eEEeeeecccceeeeecCCCcee-eeEEEEcCCCCEEEeeccceEEEEEEEeec-C-----eeeehhcCCCCcceeeEEc
Confidence 5888998865 688888887763 3344433 4666666644456788888885 2 11344444555643 44
Q ss_pred eCCeEEEEeCccccCCEEEEEECCCC--cEEEEEEcC
Q 039648 205 KNDAFFIESNSRIYGGCLFLHEHRTK--EIKNLQVTN 239 (254)
Q Consensus 205 ~~g~i~l~~~~~~~~~~~~~yd~~t~--~~~~~~~~~ 239 (254)
.+|.++.... .+..+-.+|.=.. +.+.+++..
T Consensus 488 ~~~~~LaS~S---WDkTVRiW~if~s~~~vEtl~i~s 521 (893)
T KOG0291|consen 488 PDGSLLASGS---WDKTVRIWDIFSSSGTVETLEIRS 521 (893)
T ss_pred cccCeEEecc---ccceEEEEEeeccCceeeeEeecc
Confidence 4555544433 2455555555433 555555543
No 78
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=29.01 E-value=3.8e+02 Score=25.77 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=36.6
Q ss_pred eEEEEEECCCccee----EecCCC-CCCceeEEEEeCCeEEEEecCCCCEEEEEEECC
Q 039648 129 KVILSFHMDNEVFE----EIKIPP-HVNYYSSISLYEDSLSIVIPDAEQCFEIWVMND 181 (254)
Q Consensus 129 ~~IvsfD~~~e~~~----~i~~P~-~~~~~~~l~~~~g~L~~~~~~~~~~~~IW~l~~ 181 (254)
..|.-||.+.-.|+ ++..|. .......+.-..|.++++....+.++..|.++.
T Consensus 74 G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 74 GGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred CceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 36888999988887 121221 211334555556888888877789999999997
No 79
>PTZ00420 coronin; Provisional
Probab=28.63 E-value=5.2e+02 Score=24.58 Aligned_cols=61 Identities=8% Similarity=0.112 Sum_probs=36.2
Q ss_pred CEEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCcEEEE
Q 039648 172 QCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNL 235 (254)
Q Consensus 172 ~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~~~ 235 (254)
+.+.||-++...+-.....++.......|.....+|.+++...+ +..+.+|+..++.+..+
T Consensus 240 R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG---D~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG---DGNCRYYQHSLGSIRKV 300 (568)
T ss_pred cEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC---CCeEEEEEccCCcEEee
Confidence 57999999862222233344432222334433345666666543 78899999988876655
No 80
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=28.02 E-value=1.6e+02 Score=21.03 Aligned_cols=38 Identities=11% Similarity=0.297 Sum_probs=29.3
Q ss_pred cEEEEcCcccc-cccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEe
Q 039648 26 RLTIWNPATRE-FRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVH 76 (254)
Q Consensus 26 ~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~ 76 (254)
+++..+|.+++ |... . ....+.+..|...+.|.|..+.
T Consensus 17 ~v~~~~p~~~~~W~~~----~---------~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 17 QVYQADPDTKRQWSPV----K---------GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEETTTSESEEES----S---------SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCcEeeC----C---------eEEEEEEEEECCCCEEEEEEEE
Confidence 57999999888 8865 1 1346778889988899888875
No 81
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=27.37 E-value=3.9e+02 Score=22.72 Aligned_cols=62 Identities=8% Similarity=0.331 Sum_probs=35.9
Q ss_pred eEEEEEECCCcce-eEecCCCCCC----ceeEEEEeC--C----eEEEEecCCCCEEEEEEECCCcceEEEEE
Q 039648 129 KVILSFHMDNEVF-EEIKIPPHVN----YYSSISLYE--D----SLSIVIPDAEQCFEIWVMNDNKCWAKHLT 190 (254)
Q Consensus 129 ~~IvsfD~~~e~~-~~i~~P~~~~----~~~~l~~~~--g----~L~~~~~~~~~~~~IW~l~~~~~W~~~~~ 190 (254)
-.|++||+.+.+- +.+++|+... ....|..-. + ..+.+.+.....+-|.-++.+.+|.-.+.
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 5899999998854 6678887654 222333322 2 45566644455776666666566665544
No 82
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.11 E-value=6.2e+02 Score=25.01 Aligned_cols=112 Identities=8% Similarity=0.077 Sum_probs=64.8
Q ss_pred EEEE-EEEEEEEecC------C-CceEEEEEECCCcceeEecCCCCCC------c-e--eE--EEEeCCeEEEEecCCCC
Q 039648 112 RYFK-VCYWLVIADT------R-DLKVILSFHMDNEVFEEIKIPPHVN------Y-Y--SS--ISLYEDSLSIVIPDAEQ 172 (254)
Q Consensus 112 v~~~-~lyWl~~~~~------~-~~~~IvsfD~~~e~~~~i~~P~~~~------~-~--~~--l~~~~g~L~~~~~~~~~ 172 (254)
.+.. .-||+..... . ....+++-+++++.|....+|..-. . . .. +-.-++.|++-+ ..-.
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~-~klg 330 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC-SKLG 330 (893)
T ss_pred EEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC-Cccc
Confidence 5666 7899874421 1 1357999999999999999998642 1 0 11 112245555444 3456
Q ss_pred EEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCC
Q 039648 173 CFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTK 230 (254)
Q Consensus 173 ~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~ 230 (254)
-+-||+++. ++..++.. .... -..-+.+..||.++..-.. ++++-+||..++
T Consensus 331 QLlVweWqs-EsYVlKQQ-gH~~-~i~~l~YSpDgq~iaTG~e---DgKVKvWn~~Sg 382 (893)
T KOG0291|consen 331 QLLVWEWQS-ESYVLKQQ-GHSD-RITSLAYSPDGQLIATGAE---DGKVKVWNTQSG 382 (893)
T ss_pred eEEEEEeec-cceeeecc-cccc-ceeeEEECCCCcEEEeccC---CCcEEEEeccCc
Confidence 789999985 54443322 1111 1123444566766655442 666777776653
No 83
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=27.05 E-value=68 Score=22.50 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=20.9
Q ss_pred cEEeccCceEEEEEcC----CccEEEEcCccccccc
Q 039648 8 KFVGYHDGLFCIMQSS----TNRLTIWNPATREFRN 39 (254)
Q Consensus 8 ~i~~scnGLlcl~~~~----~~~~~V~NP~T~~~~~ 39 (254)
+|+-+-+||++-.-+. +.---||+|+|++++.
T Consensus 35 kVieg~~GlFVaMPs~k~~~g~y~DI~~Pit~e~Re 70 (94)
T PRK13259 35 RVIEGNNGLFIAMPSKRTPDGEFRDIAHPINSDTRE 70 (94)
T ss_pred EEEECCCCeEEECcCcCCCCCcEEEEEccCCHHHHH
Confidence 4666778887665432 2113689999988774
No 84
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=26.89 E-value=4.2e+02 Score=23.00 Aligned_cols=128 Identities=9% Similarity=0.082 Sum_probs=59.6
Q ss_pred eEEEEEccCC--ceeeccccC---ceEEEE-EEEEEEEecCCCceEEEEEECCCc--ceeEecCCCCCCceeEEEEeCCe
Q 039648 91 NVQVYGFRTN--SWREVHGHQ---LDRYFK-VCYWLVIADTRDLKVILSFHMDNE--VFEEIKIPPHVNYYSSISLYEDS 162 (254)
Q Consensus 91 ~~~Vys~~~~--~Wr~~~~~p---~~v~~~-~lyWl~~~~~~~~~~IvsfD~~~e--~~~~i~~P~~~~~~~~l~~~~g~ 162 (254)
.+..++..++ .|+.--..+ .++..+ .+|--. .+ ..+.+||.+++ .|+ ..++... .......++.
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~-~~----g~l~ald~~tG~~~W~-~~~~~~~--~~~p~v~~~~ 147 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGT-EK----GEVIALDAEDGKELWR-AKLSSEV--LSPPLVANGL 147 (377)
T ss_pred eEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEc-CC----CEEEEEECCCCcEeee-eccCcee--ecCCEEECCE
Confidence 3455555554 487533222 344445 666322 22 37999998755 343 3333321 1112223444
Q ss_pred EEEEecCCCCEEEEEEECC-CcceEEEEEecCCC--cceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCcEEE
Q 039648 163 LSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFF--NFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKN 234 (254)
Q Consensus 163 L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~--~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~~ 234 (254)
+.+.. ....+-.|-.+. +..|.....-+... ....|.. .++.+++... ++.+..+|+++++..+
T Consensus 148 v~v~~--~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~----~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 148 VVVRT--NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFA----GGKLVALDLQTGQPLW 214 (377)
T ss_pred EEEEC--CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECC----CCEEEEEEccCCCEee
Confidence 43322 123333333333 34455432211110 0122322 2455655554 6789999999886543
No 85
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=24.79 E-value=40 Score=17.16 Aligned_cols=15 Identities=27% Similarity=0.528 Sum_probs=11.9
Q ss_pred EEEcCcccccccCCC
Q 039648 28 TIWNPATREFRNLPN 42 (254)
Q Consensus 28 ~V~NP~T~~~~~LP~ 42 (254)
.|||.+++.|+..+.
T Consensus 7 ~iwn~~~~~~vvvsE 21 (24)
T PF13018_consen 7 LIWNKARGTWVVVSE 21 (24)
T ss_pred EEEECCCCeEEEEee
Confidence 789999999876543
No 86
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=24.57 E-value=3.9e+02 Score=22.56 Aligned_cols=84 Identities=8% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCCCCC-ceeEEEEeCCeEEEEecCCCCEEEEEEECC-------CcceEEEEEec----CCCcceeeEEEEeCCeEEEEe
Q 039648 146 IPPHVN-YYSSISLYEDSLSIVIPDAEQCFEIWVMND-------NKCWAKHLTLG----PFFNFRINFGFWKNDAFFIES 213 (254)
Q Consensus 146 ~P~~~~-~~~~l~~~~g~L~~~~~~~~~~~~IW~l~~-------~~~W~~~~~i~----~~~~~~~~~~~~~~g~i~l~~ 213 (254)
.|...+ ....-+...+.+-+.+ ....+.=|..++ +..|..+--+. +.+.+....-.-+.+.|++.-
T Consensus 56 v~eqahdgpiy~~~f~d~~Lls~--gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFHDDFLLSG--GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred eeccccCCCeeeeeeehhheeec--cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec
Q ss_pred CccccCCEEEEEECCCCcEEEE
Q 039648 214 NSRIYGGCLFLHEHRTKEIKNL 235 (254)
Q Consensus 214 ~~~~~~~~~~~yd~~t~~~~~~ 235 (254)
. +..++..|++++++++.
T Consensus 134 G----D~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 134 G----DGVIYQVDLEDGRIQRE 151 (325)
T ss_pred C----CeEEEEEEecCCEEEEE
No 87
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.26 E-value=4e+02 Score=23.60 Aligned_cols=111 Identities=8% Similarity=0.082 Sum_probs=65.8
Q ss_pred EEEEEEEecCCCceEEEEEECCCc------ceeEecCC---CCCC-ce---eEEEEeCCeEEEEec------CCCCEEEE
Q 039648 116 VCYWLVIADTRDLKVILSFHMDNE------VFEEIKIP---PHVN-YY---SSISLYEDSLSIVIP------DAEQCFEI 176 (254)
Q Consensus 116 ~lyWl~~~~~~~~~~IvsfD~~~e------~~~~i~~P---~~~~-~~---~~l~~~~g~L~~~~~------~~~~~~~I 176 (254)
..+|.+..+ .|..+|++.. .|..+..- +... .. ..+..-+++|.+..+ .....=+|
T Consensus 207 ~~~~vs~eG-----~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V 281 (352)
T TIGR02658 207 RLVWPTYTG-----KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL 281 (352)
T ss_pred cEEEEecCC-----eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE
Confidence 788887663 6888886543 23322111 1111 11 223333567776442 12233489
Q ss_pred EEECCCcceEEEEEecCCCcceeeEEEEeCCe-EEEEeCccccCCEEEEEECCCC-cEEEE
Q 039648 177 WVMNDNKCWAKHLTLGPFFNFRINFGFWKNDA-FFIESNSRIYGGCLFLHEHRTK-EIKNL 235 (254)
Q Consensus 177 W~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~l~~~~~~~~~~~~~yd~~t~-~~~~~ 235 (254)
|+++- .++..+.+|+... -...+.+..||. .++..+.. +..+.++|..++ .++.+
T Consensus 282 ~ViD~-~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~--s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 282 FVVDA-KTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTG--DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEC-CCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCC--CCcEEEEECcCCeEEeee
Confidence 99995 8888888888644 234566778888 77766531 566999999987 44554
No 88
>PRK04792 tolB translocation protein TolB; Provisional
Probab=22.89 E-value=5.8e+02 Score=23.15 Aligned_cols=184 Identities=11% Similarity=0.016 Sum_probs=90.3
Q ss_pred CccEEEEcCcccccccCCCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEEEeeeeccccccCCCcCeEEEEEccCCcee
Q 039648 24 TNRLTIWNPATREFRNLPNYKYCNSSNRLIPPSTFICLESDPINNDFKLLFVHNLWNEKRKRYGKVPNVQVYGFRTNSWR 103 (254)
Q Consensus 24 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~~~~~~~~~~~~~~~~~~~~Vys~~~~~Wr 103 (254)
..+++++|..|++...|...+.. .....+.|..+ +++.... . .....+.+++++++..+
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~-----------~~~~~wSPDG~--~La~~~~---~-----~g~~~Iy~~dl~tg~~~ 299 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI-----------NGAPRFSPDGK--KLALVLS---K-----DGQPEIYVVDIATKALT 299 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC-----------cCCeeECCCCC--EEEEEEe---C-----CCCeEEEEEECCCCCeE
Confidence 34589999999887666433211 01234444433 2222211 0 11234556677777776
Q ss_pred eccccC----ceEEEE---EEEEEEEecCCCceEEEEEECCCcceeEecCCCCCCceeEEEEeCCeEEEEecCCCCEEEE
Q 039648 104 EVHGHQ----LDRYFK---VCYWLVIADTRDLKVILSFHMDNEVFEEIKIPPHVNYYSSISLYEDSLSIVIPDAEQCFEI 176 (254)
Q Consensus 104 ~~~~~p----~~v~~~---~lyWl~~~~~~~~~~IvsfD~~~e~~~~i~~P~~~~~~~~l~~~~g~L~~~~~~~~~~~~I 176 (254)
.+.... .+.+.. .+++..... ....|..+|+++.+.+.+..............-+..|++... .....+|
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~--g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~-~~g~~~I 376 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSERG--GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR-TNGKFNI 376 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCC--CCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe-cCCceEE
Confidence 664431 233332 455443222 234788899988877766432211112223333445555553 2456789
Q ss_pred EEECC-CcceEEEEEecCCCcceeeEEEEeCCe-EEEEeCccccCCEEEEEECCCCcEEEEE
Q 039648 177 WVMND-NKCWAKHLTLGPFFNFRINFGFWKNDA-FFIESNSRIYGGCLFLHEHRTKEIKNLQ 236 (254)
Q Consensus 177 W~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~l~~~~~~~~~~~~~yd~~t~~~~~~~ 236 (254)
|+++- .+....+ ........| .+..+|. |++..... ....+...|...+..+.+.
T Consensus 377 ~~~dl~~g~~~~l---t~~~~d~~p-s~spdG~~I~~~~~~~-g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 377 ARQDLETGAMQVL---TSTRLDESP-SVAPNGTMVIYSTTYQ-GKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred EEEECCCCCeEEc---cCCCCCCCc-eECCCCCEEEEEEecC-CceEEEEEECCCCceEECc
Confidence 98875 3333322 111111233 3445665 55544310 1234777888766555553
No 89
>PTZ00420 coronin; Provisional
Probab=22.67 E-value=6.2e+02 Score=24.09 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=34.7
Q ss_pred CCCEEEEEEECCCcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCcEE
Q 039648 170 AEQCFEIWVMNDNKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIK 233 (254)
Q Consensus 170 ~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~ 233 (254)
.+..+.||-++... ....+.... ...-+.+..+|.++..... +..+.+||+++++..
T Consensus 146 ~DgtIrIWDl~tg~---~~~~i~~~~-~V~SlswspdG~lLat~s~---D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 146 FDSFVNIWDIENEK---RAFQINMPK-KLSSLKWNIKGNLLSGTCV---GKHMHIIDPRKQEIA 202 (568)
T ss_pred CCCeEEEEECCCCc---EEEEEecCC-cEEEEEECCCCCEEEEEec---CCEEEEEECCCCcEE
Confidence 46789999988622 223332111 2233444567877766542 678999999987653
No 90
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=22.67 E-value=2.6e+02 Score=25.12 Aligned_cols=53 Identities=15% Similarity=0.413 Sum_probs=29.9
Q ss_pred EEecCCCCEEEEEEECC---------CcceEEEEEecCCCcceeeEEEEeCCeEEEEeCccccCCEEEEEECCCCcE
Q 039648 165 IVIPDAEQCFEIWVMND---------NKCWAKHLTLGPFFNFRINFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEI 232 (254)
Q Consensus 165 ~~~~~~~~~~~IW~l~~---------~~~W~~~~~i~~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~ 232 (254)
++....+.++.+|-++- +..|.+--...| ||+.+..-.. ++.+..||+++++-
T Consensus 130 l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP------------Dgk~iASG~~---dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 130 LVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP------------DGKKIASGSK---DGSIRLWDPKTGQQ 191 (480)
T ss_pred EEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC------------Ccchhhcccc---CCeEEEecCCCCCc
Confidence 34445688999998874 455665544433 4444333322 45566666665543
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=22.57 E-value=5.2e+02 Score=22.51 Aligned_cols=64 Identities=8% Similarity=0.178 Sum_probs=39.0
Q ss_pred CCCCEEEEEEECCCcceEEEEEecCCCcceee-EEE-E-eCCe-EEEEeCccccCCEEEEEECCCCcEEEEEEcCc
Q 039648 169 DAEQCFEIWVMNDNKCWAKHLTLGPFFNFRIN-FGF-W-KNDA-FFIESNSRIYGGCLFLHEHRTKEIKNLQVTNP 240 (254)
Q Consensus 169 ~~~~~~~IW~l~~~~~W~~~~~i~~~~~~~~~-~~~-~-~~g~-i~l~~~~~~~~~~~~~yd~~t~~~~~~~~~~~ 240 (254)
+=+..+.||++++.+.-+-+. ......| +++ | ++|. ++.... +..+-.||+.+++...+.....
T Consensus 47 SWD~tVR~wevq~~g~~~~ka----~~~~~~PvL~v~WsddgskVf~g~~----Dk~~k~wDL~S~Q~~~v~~Hd~ 114 (347)
T KOG0647|consen 47 SWDGTVRIWEVQNSGQLVPKA----QQSHDGPVLDVCWSDDGSKVFSGGC----DKQAKLWDLASGQVSQVAAHDA 114 (347)
T ss_pred ccCCceEEEEEecCCcccchh----hhccCCCeEEEEEccCCceEEeecc----CCceEEEEccCCCeeeeeeccc
Confidence 346789999999722111110 0112233 333 4 4665 555555 8899999999999988876544
No 92
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=22.27 E-value=3e+02 Score=22.86 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=36.4
Q ss_pred ccCceEEEEEcCCccEEEEcCcccccccC--CCCCCCCCCCCCCCCcceEEEEeeCCCCCeEEEE
Q 039648 12 YHDGLFCIMQSSTNRLTIWNPATREFRNL--PNYKYCNSSNRLIPPSTFICLESDPINNDFKLLF 74 (254)
Q Consensus 12 scnGLlcl~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~g~g~d~~~~~yKVv~ 74 (254)
+.+|.|.-....+ ++|--||.|+.-..+ .+.... .....+||-|+|..++-+||.
T Consensus 36 pa~G~LYgl~~~g-~lYtIn~~tG~aT~vg~s~~~~a-------l~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLGSTG-RLYTINPATGAATPVGASPLTVA-------LSGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEeCCC-cEEEEECCCCeEEEeeccccccc-------ccCceEEEecCcccCcEEEEc
Confidence 5667665444432 479999999997777 222111 113478888999999877774
No 93
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=21.22 E-value=4.7e+02 Score=21.76 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=27.9
Q ss_pred CcEEeccCceEEEEEcCCccEEEEcCccccc-ccCCCCCCC
Q 039648 7 DKFVGYHDGLFCIMQSSTNRLTIWNPATREF-RNLPNYKYC 46 (254)
Q Consensus 7 ~~i~~scnGLlcl~~~~~~~~~V~NP~T~~~-~~LP~~~~~ 46 (254)
|.+.---+|-|++....+. .|+||.+.+. +.||..|..
T Consensus 173 P~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 173 PFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred ceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCCCCC
Confidence 4455556777777666656 8889999986 889987754
No 94
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=21.07 E-value=5.2e+02 Score=21.91 Aligned_cols=104 Identities=8% Similarity=0.094 Sum_probs=55.9
Q ss_pred eEEEEEECC--CcceeEe----cCCCCCC-c-e-eEEE-EeCCeEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCcc
Q 039648 129 KVILSFHMD--NEVFEEI----KIPPHVN-Y-Y-SSIS-LYEDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNF 197 (254)
Q Consensus 129 ~~IvsfD~~--~e~~~~i----~~P~~~~-~-~-~~l~-~~~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~ 197 (254)
..|..+|++ ++++..+ .+|.... . . ..+. .-+|+..++.......+.+|.++. ...++....++... .
T Consensus 197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~-~ 275 (330)
T PRK11028 197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET-Q 275 (330)
T ss_pred CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc-c
Confidence 367778876 3344332 2343221 1 1 1122 124544444444578999999976 45666666665432 2
Q ss_pred eeeEEEEeCCeEEEEeCccccCCEEEEEEC--CCCcEEEE
Q 039648 198 RINFGFWKNDAFFIESNSRIYGGCLFLHEH--RTKEIKNL 235 (254)
Q Consensus 198 ~~~~~~~~~g~i~l~~~~~~~~~~~~~yd~--~t~~~~~~ 235 (254)
.+-+.+..+|+.++.... .+..+.+|+. +++.++.+
T Consensus 276 p~~~~~~~dg~~l~va~~--~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 276 PRGFNIDHSGKYLIAAGQ--KSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred CCceEECCCCCEEEEEEc--cCCcEEEEEEcCCCCcEEEc
Confidence 233556677875554431 1566777754 56667665
No 95
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=20.71 E-value=4.3e+02 Score=20.83 Aligned_cols=94 Identities=11% Similarity=0.203 Sum_probs=50.7
Q ss_pred EEEEEECCCcce--eE-ecCCCCCC-------ceeEEEEeCCeEEEEecCCCCEEEEEEECC-CcceEEEEEecCCCcce
Q 039648 130 VILSFHMDNEVF--EE-IKIPPHVN-------YYSSISLYEDSLSIVIPDAEQCFEIWVMND-NKCWAKHLTLGPFFNFR 198 (254)
Q Consensus 130 ~IvsfD~~~e~~--~~-i~~P~~~~-------~~~~l~~~~g~L~~~~~~~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~ 198 (254)
.|+++|+++++- .. +..|.... ....+...+|.+.+.... ...+.+ -++. +..|++. +.. .
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~-d~~tg~~~w~~~--~~~----~ 204 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD-GRVVAV-DLATGEKLWSKP--ISG----I 204 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT-SSEEEE-ETTTTEEEEEEC--SS-----E
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC-CeEEEE-ECCCCCEEEEec--CCC----c
Confidence 799999987743 22 23333211 124444556766655532 223444 4444 2236322 221 1
Q ss_pred eeEEEEeCCeEEEEeCccccCCEEEEEECCCCcEEEE
Q 039648 199 INFGFWKNDAFFIESNSRIYGGCLFLHEHRTKEIKNL 235 (254)
Q Consensus 199 ~~~~~~~~g~i~l~~~~~~~~~~~~~yd~~t~~~~~~ 235 (254)
.......++.+++... ++.++++|++|++..+.
T Consensus 205 ~~~~~~~~~~l~~~~~----~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 205 YSLPSVDGGTLYVTSS----DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CECEECCCTEEEEEET----TTEEEEEETTTTEEEEE
T ss_pred cCCceeeCCEEEEEeC----CCEEEEEECCCCCEEeE
Confidence 1112344566777775 78999999999987753
Done!