BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039650
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 135/417 (32%), Positives = 195/417 (46%), Gaps = 57/417 (13%)
Query: 7 NQLSGLIPHE-IGRLSSFNGLSLYSNFLKGSIPPSLGNLT-SLSYIGISNNLLSGSI-PN 63
N SG +P + + ++ L L N G +P SL NL+ SL + +S+N SG I PN
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 64 EVESLK-SLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDL 122
++ K +L +L L NN G IP +L N + LV+LHL N LSG IP + +L L DL
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 123 IYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNAL 182
W+N L IP E+ +K+L L LD+N L+G IP N T L + L N L
Sbjct: 448 KL-----WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 183 SGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIP------- 235
+G IP I L++L L+L NN+ SG+IP LG + N +G+IP
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 236 ---------------------------------------NEITNLRSLSDLQLSENTLNG 256
++ L + + ++ G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 257 SIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSL 316
N ++ L +S N LSG I S+ L L L N + SI E+GD++ L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 317 SILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNN 373
+ILDLSSNKL+G I +++ LT L + LS+N++ G IP G+F + NN
Sbjct: 683 NILDLSSNKLDGRIPQAMSALT-MLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 737
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 199/412 (48%), Gaps = 33/412 (8%)
Query: 2 LSFSKNQLSGLIPHEI-GRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGS 60
LS ++N+ +G IP + G + GL L N G++PP G+ + L + +S+N SG
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 61 IP-NEVESLKSLSDLRLYNNTLKGSIPSSLGNLT-NLVNLHLHINALSG-LIPDEIRNLE 117
+P + + ++ L L L N G +P SL NL+ +L+ L L N SG ++P+ +N +
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 118 FLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYL 177
+Y N + IP + N L L L +N LSG+IP S G+L+KL L L
Sbjct: 394 NTLQELY----LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 178 DTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNE 237
N L G IP E+ +K+L L LD N L+G IP L S N L+G IP
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 238 ITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTS------ 291
I L +L+ L+LS N+ +G+IP LG+ L+ L L+ N +G+I + +
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Query: 292 -LTNLYLYENSLCDSIQKEI-GDMKSLSILDLSSNKLNGSILLSLANLTN---------- 339
Y+Y + D ++KE G L + S +LN + N+T+
Sbjct: 570 IAGKRYVYIKN--DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 340 -----SLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSL 386
S+ L +S N + G IP G L L L +N++SG + E+G L
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 136/396 (34%), Positives = 191/396 (48%), Gaps = 41/396 (10%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L+ S N++SG + ++ R + L + SN IP LG+ ++L ++ IS N LSG
Sbjct: 183 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 239
Query: 62 PNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSD 121
+ + L L + +N G IP L +L L L N +G IPD FLS
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD------FLS- 290
Query: 122 LIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNA 181
G +L+ L L N G++P FG+ + L +L L +N
Sbjct: 291 ---------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 182 LSGSIP-DEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXY-FSMNALSGSI-PNEI 238
SG +P D + ++ L L L N SG +P SL S N SG I PN
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 239 TNLR-SLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYL 297
N + +L +L L N G IP L N ++LV L+LS N LSG+I S SL+ L +L L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 298 YENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPL 357
+ N L I +E+ +K+L L L N L G I L+N TN L + LS+N + GEIP
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPK 508
Query: 358 GHGKFSSLIQLILTNNELSGQLSPELG---SLIQLE 390
G+ +L L L+NN SG + ELG SLI L+
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 173/362 (47%), Gaps = 24/362 (6%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L S N+LSG I + L++ SN G IPP L SL Y+ ++ N +G I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 62 PNEVE-SLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDE----IRNL 116
P+ + + +L+ L L N G++P G+ + L +L L N SG +P + +R L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 117 EFLSDLIYNYLIYWINALSDLIPNEIGNL-KSLSDLRLDYNTLSGSIPYSFGNLTK---- 171
+ L DL +N S +P + NL SL L L N SG I NL +
Sbjct: 346 KVL-DLSFN-------EFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKN 394
Query: 172 -LVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNAL 230
L LYL N +G IP + N L +L L N LSG+IP SLG +N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 231 SGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLT 290
G IP E+ +++L L L N L G IP L N T L + LS N+L+G I L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 291 SLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNH 350
+L L L NS +I E+GD +SL LDL++N NG+I ++ + + +++
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 351 IV 352
V
Sbjct: 575 YV 576
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 169/385 (43%), Gaps = 54/385 (14%)
Query: 21 SSFNGLSLYSNFLKGSIPP--SLGNLTSLSYIGISNNLLSGSIPNEVE---SLKSLSDLR 75
+S L L N L G + SLG+ + L ++ +S+N L P +V L SL L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 157
Query: 76 LYNNTLKGS------IPSSLGNLTNLVNLHLHINALSGLIP-DEIRNLEFLSDLIYNYLI 128
L N++ G+ + G L +L + N +SG + NLEFL N+
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSRCVNLEFLDVSSNNF-- 212
Query: 129 YWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPD 188
S IP +G+ +L L + N LSG + T+L L + +N G IP
Sbjct: 213 ------STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 189 EIRNLKSLFNLQLDNNTLSGSIPLSL-GXXXXXXXXYFSMNALSGSIPNEITNLRSLSDL 247
LKSL L L N +G IP L G S N G++P + L L
Sbjct: 266 --LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 248 QLSENTLNGSIPL-ALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSI 306
LS N +G +P+ L + L VL LS N+ SG + SLTNL
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP------ESLTNLS---------- 367
Query: 307 QKEIGDMKSLSILDLSSNKLNGSILLSLA-NLTNSLKVLYLSSNHIVGEIPLGHGKFSSL 365
SL LDLSSN +G IL +L N N+L+ LYL +N G+IP S L
Sbjct: 368 -------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 366 IQLILTNNELSGQLSPELGSLIQLE 390
+ L L+ N LSG + LGSL +L
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLR 445
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 172/405 (42%), Gaps = 30/405 (7%)
Query: 2 LSFSKNQLSGLIPH--EIGRLSSFNGLSLYSNFLK--GSIPPSLGNLTSLSYIGISNNLL 57
L S+N LSG + +G S L++ SN L G + L L SL + +S N +
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSI 163
Query: 58 SGSIPNEV-----ESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDE 112
SG+ N V + L L + N + G + + NL L + N S IP
Sbjct: 164 SGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-- 217
Query: 113 IRNLEFLSDL-IYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTK 171
FL D +L N LS I L L + N G IP L
Sbjct: 218 -----FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270
Query: 172 LVTLYLDTNALSGSIPDEIRN-LKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNAL 230
L L L N +G IPD + +L L L N G++P G S N
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 231 SGSIP-NEITNLRSLSDLQLSENTLNGSIPLALGNLTK-LVVLYLSINKLSGSI--SLSY 286
SG +P + + +R L L LS N +G +P +L NL+ L+ L LS N SG I +L
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 287 ASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYL 346
+L LYL N I + + L L LS N L+G+I SL +L+ L+ L L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKL 449
Query: 347 SSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSLIQLEY 391
N + GEIP +L LIL N+L+G++ L + L +
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 168/350 (48%), Gaps = 25/350 (7%)
Query: 52 ISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIP--SSLGNLTNLVNLHLHINALSGLI 109
+SN+ ++GS+ + + SL+ L L N+L G + +SLG+ + L L++ N L
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--F 140
Query: 110 PDEI------RNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP 163
P ++ +LE L DL N I N + ++ + G LK L+ + N +SG +
Sbjct: 141 PGKVSGGLKLNSLEVL-DLSANS-ISGANVVGWVLSDGCGELKHLA---ISGNKISGDVD 195
Query: 164 YSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXX 223
S L L + +N S IP + + +L +L + N LSG ++
Sbjct: 196 VS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 224 YFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLAL-GNLTKLVVLYLSINKLSGSI 282
S N G IP L+SL L L+EN G IP L G L L LS N G++
Sbjct: 253 NISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 283 SLSYASLTSLTNLYLYENSLCDSIQKE-IGDMKSLSILDLSSNKLNGSILLSLANLTNSL 341
+ S + L +L L N+ + + + M+ L +LDLS N+ +G + SL NL+ SL
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 342 KVLYLSSNHIVGEI-P-LGHGKFSSLIQLILTNNELSGQLSPELGSLIQL 389
L LSSN+ G I P L ++L +L L NN +G++ P L + +L
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 27/210 (12%)
Query: 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSL----GNLTS-----LSYIG 51
+L S N SG IP E+G S L L +N G+IP ++ G + + Y+
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 52 ISN-----------NLL--SGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNL 98
I N NLL G ++ L + + + + G + N +++ L
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 99 HLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTL 158
+ N LSG IP EI ++ +L L + N +S IP+E+G+L+ L+ L L N L
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGH-----NDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 159 SGSIPYSFGNLTKLVTLYLDTNALSGSIPD 188
G IP + LT L + L N LSG IP+
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGS 60
+L+ N +SG IP E+G L N L L SN L G IP ++ LT L+ I +SNN LSG
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719
Query: 61 IPNEVESLKSLSDLRLYNN 79
IP E+ ++ + NN
Sbjct: 720 IP-EMGQFETFPPAKFLNN 737
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 135/417 (32%), Positives = 195/417 (46%), Gaps = 57/417 (13%)
Query: 7 NQLSGLIPHE-IGRLSSFNGLSLYSNFLKGSIPPSLGNLT-SLSYIGISNNLLSGSI-PN 63
N SG +P + + ++ L L N G +P SL NL+ SL + +S+N SG I PN
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 64 EVESLK-SLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDL 122
++ K +L +L L NN G IP +L N + LV+LHL N LSG IP + +L L DL
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 123 IYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNAL 182
W+N L IP E+ +K+L L LD+N L+G IP N T L + L N L
Sbjct: 445 KL-----WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 183 SGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIP------- 235
+G IP I L++L L+L NN+ SG+IP LG + N +G+IP
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Query: 236 ---------------------------------------NEITNLRSLSDLQLSENTLNG 256
++ L + + ++ G
Sbjct: 560 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 257 SIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSL 316
N ++ L +S N LSG I S+ L L L N + SI E+GD++ L
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 317 SILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNN 373
+ILDLSSNKL+G I +++ LT L + LS+N++ G IP G+F + NN
Sbjct: 680 NILDLSSNKLDGRIPQAMSALT-MLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 734
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 199/412 (48%), Gaps = 33/412 (8%)
Query: 2 LSFSKNQLSGLIPHEI-GRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGS 60
LS ++N+ +G IP + G + GL L N G++PP G+ + L + +S+N SG
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 61 IP-NEVESLKSLSDLRLYNNTLKGSIPSSLGNLT-NLVNLHLHINALSG-LIPDEIRNLE 117
+P + + ++ L L L N G +P SL NL+ +L+ L L N SG ++P+ +N +
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 118 FLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYL 177
+Y N + IP + N L L L +N LSG+IP S G+L+KL L L
Sbjct: 391 NTLQELY----LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 178 DTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNE 237
N L G IP E+ +K+L L LD N L+G IP L S N L+G IP
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 238 ITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTS------ 291
I L +L+ L+LS N+ +G+IP LG+ L+ L L+ N +G+I + +
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 566
Query: 292 -LTNLYLYENSLCDSIQKEI-GDMKSLSILDLSSNKLNGSILLSLANLTN---------- 339
Y+Y + D ++KE G L + S +LN + N+T+
Sbjct: 567 IAGKRYVYIKN--DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 340 -----SLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSL 386
S+ L +S N + G IP G L L L +N++SG + E+G L
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/362 (33%), Positives = 173/362 (47%), Gaps = 24/362 (6%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L S N+LSG I + L++ SN G IPP L SL Y+ ++ N +G I
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 282
Query: 62 PNEVE-SLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDE----IRNL 116
P+ + + +L+ L L N G++P G+ + L +L L N SG +P + +R L
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 117 EFLSDLIYNYLIYWINALSDLIPNEIGNL-KSLSDLRLDYNTLSGSIPYSFGNLTK---- 171
+ L DL +N S +P + NL SL L L N SG I NL +
Sbjct: 343 KVL-DLSFN-------EFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKN 391
Query: 172 -LVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNAL 230
L LYL N +G IP + N L +L L N LSG+IP SLG +N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 231 SGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLT 290
G IP E+ +++L L L N L G IP L N T L + LS N+L+G I L
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 291 SLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNH 350
+L L L NS +I E+GD +SL LDL++N NG+I ++ + + +++
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 351 IV 352
V
Sbjct: 572 YV 573
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 136/396 (34%), Positives = 191/396 (48%), Gaps = 41/396 (10%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L+ S N++SG + ++ R + L + SN IP LG+ ++L ++ IS N LSG
Sbjct: 180 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 236
Query: 62 PNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSD 121
+ + L L + +N G IP L +L L L N +G IPD FLS
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD------FLS- 287
Query: 122 LIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNA 181
G +L+ L L N G++P FG+ + L +L L +N
Sbjct: 288 ---------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 182 LSGSIP-DEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXY-FSMNALSGSI-PNEI 238
SG +P D + ++ L L L N SG +P SL S N SG I PN
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 239 TNLR-SLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYL 297
N + +L +L L N G IP L N ++LV L+LS N LSG+I S SL+ L +L L
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 298 YENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPL 357
+ N L I +E+ +K+L L L N L G I L+N TN L + LS+N + GEIP
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPK 505
Query: 358 GHGKFSSLIQLILTNNELSGQLSPELG---SLIQLE 390
G+ +L L L+NN SG + ELG SLI L+
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 169/385 (43%), Gaps = 54/385 (14%)
Query: 21 SSFNGLSLYSNFLKGSIPP--SLGNLTSLSYIGISNNLLSGSIPNEVE---SLKSLSDLR 75
+S L L N L G + SLG+ + L ++ +S+N L P +V L SL L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 154
Query: 76 LYNNTLKGS------IPSSLGNLTNLVNLHLHINALSGLIP-DEIRNLEFLSDLIYNYLI 128
L N++ G+ + G L +L + N +SG + NLEFL N+
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVSRCVNLEFLDVSSNNF-- 209
Query: 129 YWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPD 188
S IP +G+ +L L + N LSG + T+L L + +N G IP
Sbjct: 210 ------STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 262
Query: 189 EIRNLKSLFNLQLDNNTLSGSIPLSL-GXXXXXXXXYFSMNALSGSIPNEITNLRSLSDL 247
LKSL L L N +G IP L G S N G++P + L L
Sbjct: 263 --LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 248 QLSENTLNGSIPL-ALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSI 306
LS N +G +P+ L + L VL LS N+ SG + SLTNL
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP------ESLTNLS---------- 364
Query: 307 QKEIGDMKSLSILDLSSNKLNGSILLSLA-NLTNSLKVLYLSSNHIVGEIPLGHGKFSSL 365
SL LDLSSN +G IL +L N N+L+ LYL +N G+IP S L
Sbjct: 365 -------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 366 IQLILTNNELSGQLSPELGSLIQLE 390
+ L L+ N LSG + LGSL +L
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLR 442
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 172/405 (42%), Gaps = 30/405 (7%)
Query: 2 LSFSKNQLSGLIPH--EIGRLSSFNGLSLYSNFLK--GSIPPSLGNLTSLSYIGISNNLL 57
L S+N LSG + +G S L++ SN L G + L L SL + +S N +
Sbjct: 102 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSI 160
Query: 58 SGSIPNEV-----ESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDE 112
SG+ N V + L L + N + G + + NL L + N S IP
Sbjct: 161 SGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-- 214
Query: 113 IRNLEFLSDL-IYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTK 171
FL D +L N LS I L L + N G IP L
Sbjct: 215 -----FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 267
Query: 172 LVTLYLDTNALSGSIPDEIRN-LKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNAL 230
L L L N +G IPD + +L L L N G++P G S N
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 231 SGSIP-NEITNLRSLSDLQLSENTLNGSIPLALGNLTK-LVVLYLSINKLSGSI--SLSY 286
SG +P + + +R L L LS N +G +P +L NL+ L+ L LS N SG I +L
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 287 ASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYL 346
+L LYL N I + + L L LS N L+G+I SL +L+ L+ L L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKL 446
Query: 347 SSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSLIQLEY 391
N + GEIP +L LIL N+L+G++ L + L +
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 168/350 (48%), Gaps = 25/350 (7%)
Query: 52 ISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIP--SSLGNLTNLVNLHLHINALSGLI 109
+SN+ ++GS+ + + SL+ L L N+L G + +SLG+ + L L++ N L
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--F 137
Query: 110 PDEI------RNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP 163
P ++ +LE L DL N I N + ++ + G LK L+ + N +SG +
Sbjct: 138 PGKVSGGLKLNSLEVL-DLSANS-ISGANVVGWVLSDGCGELKHLA---ISGNKISGDVD 192
Query: 164 YSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXX 223
S L L + +N S IP + + +L +L + N LSG ++
Sbjct: 193 VS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 249
Query: 224 YFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLAL-GNLTKLVVLYLSINKLSGSI 282
S N G IP L+SL L L+EN G IP L G L L LS N G++
Sbjct: 250 NISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Query: 283 SLSYASLTSLTNLYLYENSLCDSIQKE-IGDMKSLSILDLSSNKLNGSILLSLANLTNSL 341
+ S + L +L L N+ + + + M+ L +LDLS N+ +G + SL NL+ SL
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 342 KVLYLSSNHIVGEI-P-LGHGKFSSLIQLILTNNELSGQLSPELGSLIQL 389
L LSSN+ G I P L ++L +L L NN +G++ P L + +L
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 27/210 (12%)
Query: 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSL----GNLTS-----LSYIG 51
+L S N SG IP E+G S L L +N G+IP ++ G + + Y+
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574
Query: 52 ISN-----------NLL--SGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNL 98
I N NLL G ++ L + + + + G + N +++ L
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 99 HLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTL 158
+ N LSG IP EI ++ +L L + N +S IP+E+G+L+ L+ L L N L
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGH-----NDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 159 SGSIPYSFGNLTKLVTLYLDTNALSGSIPD 188
G IP + LT L + L N LSG IP+
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGS 60
+L+ N +SG IP E+G L N L L SN L G IP ++ LT L+ I +SNN LSG
Sbjct: 657 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 716
Query: 61 IPNEVESLKSLSDLRLYNN 79
IP E+ ++ + NN
Sbjct: 717 IP-EMGQFETFPPAKFLNN 734
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)
Query: 138 IPNEIGNLKSLSDLRLD-YNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSL 196
IP+ + NL L+ L + N L G IP + LT+L LY+ +SG+IPD + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 197 FNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNEITNLRSL-SDLQLSENTLN 255
L N LSG++P S+ F N +SG+IP+ + L + + +S N L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 256 GSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKS 315
G IP NL L + LS N L G S+ + S + ++L +NSL + K +G K+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245
Query: 316 LSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLG 358
L+ LDL +N++ G++ L L L L +S N++ GEIP G
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQG 287
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 7/224 (3%)
Query: 13 IPHEIGRLSSFNGLSLYS-NFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSL 71
IP + L N L + N L G IPP++ LT L Y+ I++ +SG+IP+ + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 72 SDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWI 131
L N L G++P S+ +L NLV + N +SG IPD + L + +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL----FTSMTISR 183
Query: 132 NALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIR 191
N L+ IP NL +L+ + L N L G FG+ ++L N+L+ + ++
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVG 241
Query: 192 NLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIP 235
K+L L L NN + G++P L S N L G IP
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 16/232 (6%)
Query: 7 NQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVE 66
N L G IP I +L+ + L + + G+IP L + +L + S N LSG++P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 67 SLKSLSDLRLYNNTLKGSIPSSLGNLTNL-VNLHLHINALSGLIPDEIRNLEF-LSDLIY 124
SL +L + N + G+IP S G+ + L ++ + N L+G IP NL DL
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 125 NYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNL---TKLVTLYLDTNA 181
N L + L G+ K+ + L N+L+ + G + L L L N
Sbjct: 207 NMLEGDASVL-------FGSDKNTQKIHLAKNSLA----FDLGKVGLSKNLNGLDLRNNR 255
Query: 182 LSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGS 233
+ G++P + LK L +L + N L G IP Y + L GS
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 10/188 (5%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L + +SG IP + ++ + L N L G++PPS+ +L +L I N +SG+I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 62 PNEVESLKSL-SDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLS 120
P+ S L + + + N L G IP + NL NL + L N L G ++ F S
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG-----DASVLFGS 219
Query: 121 DLIYNYLIYWINALS-DLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDT 179
D + N+L+ DL ++G K+L+ L L N + G++P L L +L +
Sbjct: 220 DKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 180 NALSGSIP 187
N L G IP
Sbjct: 278 NNLCGEIP 285
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 324 NKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPEL 383
N L G I ++A LT L LY++ ++ G IP + +L+ L + N LSG L P +
Sbjct: 87 NNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 384 GSLIQL 389
SL L
Sbjct: 146 SSLPNL 151
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 161/337 (47%), Gaps = 43/337 (12%)
Query: 44 LTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHIN 103
L +L+ I SNN L+ P +++L L D+ + NN + P L NLTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 104 ALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP 163
++ + D ++NL L N L N +SD+ + + L SL L N ++ P
Sbjct: 118 QITDI--DPLKNLTNL-----NRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP 168
Query: 164 YSFGNLTKLVTLYLDTNALSG-SIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXX 222
NLT L L + +N +S S+ ++ NL+SL NN +S PL +
Sbjct: 169 --LANLTTLERLDISSNKVSDISVLAKLTNLESLI---ATNNQISDITPLGI----LTNL 219
Query: 223 XYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSI 282
S+N + +L +L+DL L+ N ++ PL+ LTKL L L N++S
Sbjct: 220 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNIS 277
Query: 283 SLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLK 342
L A LT+LTNL L EN L D I ++K+L+ L L N N S + +++LT L+
Sbjct: 278 PL--AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFN--NISDISPVSSLT-KLQ 330
Query: 343 VLYLSSNHI-----------VGEIPLGHGKFSSLIQL 368
L+ S+N + + + GH + S L L
Sbjct: 331 RLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 367
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 131/273 (47%), Gaps = 48/273 (17%)
Query: 113 IRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKL 172
I +E+L++L + + N L+D+ P + NL L D+ ++ N ++ P NLT L
Sbjct: 56 IDGVEYLNNLTQ--INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 109
Query: 173 VTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSG 232
L L N ++ D ++NL +L L+L +NT+S ++ALSG
Sbjct: 110 TGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS------------------DISALSG 149
Query: 233 SIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSL 292
L SL L S N + PLA NLT L L +S NK+S IS+ A LT+L
Sbjct: 150 --------LTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVS-DISV-LAKLTNL 197
Query: 293 TNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG-SILLSLANLTNSLKVLYLSSNHI 351
+L N + D +G + +L L L+ N+L L SL NLT+ L L++N I
Sbjct: 198 ESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTD----LDLANNQI 251
Query: 352 VGEIPLGHGKFSSLIQLILTNNELSGQLSPELG 384
PL + L +L L N++S +SP G
Sbjct: 252 SNLAPLSG--LTKLTELKLGANQISN-ISPLAG 281
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 70/149 (46%), Gaps = 16/149 (10%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L NQ+S + P + L++ L L N L+ P + NL +L+Y+ + N +S
Sbjct: 266 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 321
Query: 62 PNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSD 121
P V SL L L NN K S SSL NLTN+ L N +S L P + NL ++
Sbjct: 322 P--VSSLTKLQRLFFSNN--KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 375
Query: 122 LIYNYLIYWINALSDL-----IPNEIGNL 145
L N W NA + IPN + N+
Sbjct: 376 LGLNDQ-AWTNAPVNYKANVSIPNTVKNV 403
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 160/337 (47%), Gaps = 43/337 (12%)
Query: 44 LTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHIN 103
L +L+ I SNN L+ P +++L L D+ + NN + P L NLTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 104 ALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP 163
++ + D ++NL L N L N +SD+ + + L SL L N ++ P
Sbjct: 118 QITDI--DPLKNLTNL-----NRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP 168
Query: 164 YSFGNLTKLVTLYLDTNALSG-SIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXX 222
NLT L L + +N +S S+ ++ NL+SL NN +S PL +
Sbjct: 169 --LANLTTLERLDISSNKVSDISVLAKLTNLESLI---ATNNQISDITPLGI----LTNL 219
Query: 223 XYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSI 282
S+N + +L +L+DL L+ N ++ PL+ LTKL L L N++S
Sbjct: 220 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNIS 277
Query: 283 SLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLK 342
L A LT+LTNL L EN L D I ++K+L+ L L N N S + +++LT L+
Sbjct: 278 PL--AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFN--NISDISPVSSLT-KLQ 330
Query: 343 VLYLSSNHI-----------VGEIPLGHGKFSSLIQL 368
L+ +N + + + GH + S L L
Sbjct: 331 RLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 367
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 131/273 (47%), Gaps = 48/273 (17%)
Query: 113 IRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKL 172
I +E+L++L + + N L+D+ P + NL L D+ ++ N ++ P NLT L
Sbjct: 56 IDGVEYLNNLTQ--INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 109
Query: 173 VTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSG 232
L L N ++ D ++NL +L L+L +NT+S ++ALSG
Sbjct: 110 TGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS------------------DISALSG 149
Query: 233 SIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSL 292
L SL L S N + PLA NLT L L +S NK+S IS+ A LT+L
Sbjct: 150 --------LTSLQQLNFSSNQVTDLKPLA--NLTTLERLDISSNKVS-DISV-LAKLTNL 197
Query: 293 TNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG-SILLSLANLTNSLKVLYLSSNHI 351
+L N + D +G + +L L L+ N+L L SL NLT+ L L++N I
Sbjct: 198 ESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTD----LDLANNQI 251
Query: 352 VGEIPLGHGKFSSLIQLILTNNELSGQLSPELG 384
PL + L +L L N++S +SP G
Sbjct: 252 SNLAPLSG--LTKLTELKLGANQISN-ISPLAG 281
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L NQ+S + P + L++ L L N L+ P + NL +L+Y+ + N +S
Sbjct: 266 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 321
Query: 62 PNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSD 121
P V SL L L YNN K S SSL NLTN+ L N +S L P + NL ++
Sbjct: 322 P--VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 375
Query: 122 LIYNYLIYWINALSDL-----IPNEIGNL 145
L N W NA + IPN + N+
Sbjct: 376 LGLNDQ-AWTNAPVNYKANVSIPNTVKNV 403
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 160/337 (47%), Gaps = 43/337 (12%)
Query: 44 LTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHIN 103
L +L+ I SNN L+ P +++L L D+ + NN + P L NLTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 104 ALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP 163
++ + D ++NL L N L N +SD+ + + L SL L N ++ P
Sbjct: 118 QITDI--DPLKNLTNL-----NRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP 168
Query: 164 YSFGNLTKLVTLYLDTNALSG-SIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXX 222
NLT L L + +N +S S+ ++ NL+SL NN +S PL +
Sbjct: 169 --LANLTTLERLDISSNKVSDISVLAKLTNLESLI---ATNNQISDITPLGI----LTNL 219
Query: 223 XYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSI 282
S+N + +L +L+DL L+ N ++ PL+ LTKL L L N++S
Sbjct: 220 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNIS 277
Query: 283 SLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLK 342
L A LT+LTNL L EN L D I ++K+L+ L L N N S + +++LT L+
Sbjct: 278 PL--AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFN--NISDISPVSSLT-KLQ 330
Query: 343 VLYLSSNHI-----------VGEIPLGHGKFSSLIQL 368
L+ +N + + + GH + S L L
Sbjct: 331 RLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 367
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 131/273 (47%), Gaps = 48/273 (17%)
Query: 113 IRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKL 172
I +E+L++L + + N L+D+ P + NL L D+ ++ N ++ P NLT L
Sbjct: 56 IDGVEYLNNLTQ--INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 109
Query: 173 VTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSG 232
L L N ++ D ++NL +L L+L +NT+S ++ALSG
Sbjct: 110 TGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS------------------DISALSG 149
Query: 233 SIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSL 292
L SL L S N + PLA NLT L L +S NK+S IS+ A LT+L
Sbjct: 150 --------LTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVS-DISV-LAKLTNL 197
Query: 293 TNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG-SILLSLANLTNSLKVLYLSSNHI 351
+L N + D +G + +L L L+ N+L L SL NLT+ L L++N I
Sbjct: 198 ESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTD----LDLANNQI 251
Query: 352 VGEIPLGHGKFSSLIQLILTNNELSGQLSPELG 384
PL + L +L L N++S +SP G
Sbjct: 252 SNLAPLSG--LTKLTELKLGANQISN-ISPLAG 281
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L NQ+S + P + L++ L L N L+ P + NL +L+Y+ + N +S
Sbjct: 266 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 321
Query: 62 PNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSD 121
P V SL L L YNN K S SSL NLTN+ L N +S L P + NL ++
Sbjct: 322 P--VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 375
Query: 122 LIYNYLIYWINALSDL-----IPNEIGNL 145
L N W NA + IPN + N+
Sbjct: 376 LGLNDQ-AWTNAPVNYKANVSIPNTVKNV 403
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 161/337 (47%), Gaps = 44/337 (13%)
Query: 44 LTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHIN 103
L +L+ I SNN L+ P +++L L D+ + NN + P L NLTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 104 ALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP 163
++ + D ++NL L N L N +SD+ + + L SL L N ++ P
Sbjct: 118 QITDI--DPLKNLTNL-----NRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP 167
Query: 164 YSFGNLTKLVTLYLDTNALSG-SIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXX 222
NLT L L + +N +S S+ ++ NL+SL NN +S PL +
Sbjct: 168 --LANLTTLERLDISSNKVSDISVLAKLTNLESLI---ATNNQISDITPLGI----LTNL 218
Query: 223 XYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSI 282
S+N + +L +L+DL L+ N ++ PL+ LTKL L L N++S
Sbjct: 219 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNIS 276
Query: 283 SLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLK 342
L A LT+LTNL L EN L D I ++K+L+ L L N N S + +++LT L+
Sbjct: 277 PL--AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFN--NISDISPVSSLT-KLQ 329
Query: 343 VLYLSSNHI-----------VGEIPLGHGKFSSLIQL 368
L+ S+N + + + GH + S L L
Sbjct: 330 RLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 366
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 130/273 (47%), Gaps = 49/273 (17%)
Query: 113 IRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKL 172
I +E+L++L + + N L+D+ P + NL L D+ ++ N ++ P NLT L
Sbjct: 56 IDGVEYLNNLTQ--INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 109
Query: 173 VTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSG 232
L L N ++ D ++NL +L L+L +NT+S ++ALSG
Sbjct: 110 TGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS------------------DISALSG 149
Query: 233 SIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSL 292
L SL L N + PLA NLT L L +S NK+S IS+ A LT+L
Sbjct: 150 --------LTSLQQLNFG-NQVTDLKPLA--NLTTLERLDISSNKVS-DISV-LAKLTNL 196
Query: 293 TNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG-SILLSLANLTNSLKVLYLSSNHI 351
+L N + D +G + +L L L+ N+L L SL NLT+ L L++N I
Sbjct: 197 ESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTD----LDLANNQI 250
Query: 352 VGEIPLGHGKFSSLIQLILTNNELSGQLSPELG 384
PL + L +L L N++S +SP G
Sbjct: 251 SNLAPLSG--LTKLTELKLGANQISN-ISPLAG 280
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 70/149 (46%), Gaps = 16/149 (10%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L NQ+S + P + L++ L L N L+ P + NL +L+Y+ + N +S
Sbjct: 265 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 320
Query: 62 PNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSD 121
P V SL L L NN K S SSL NLTN+ L N +S L P + NL ++
Sbjct: 321 P--VSSLTKLQRLFFSNN--KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 374
Query: 122 LIYNYLIYWINALSDL-----IPNEIGNL 145
L N W NA + IPN + N+
Sbjct: 375 LGLNDQ-AWTNAPVNYKANVSIPNTVKNV 402
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 161/337 (47%), Gaps = 44/337 (13%)
Query: 44 LTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHIN 103
L +L+ I SNN L+ P +++L L D+ + NN + P L NLTNL L L N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 104 ALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP 163
++ + D ++NL L N L N +SD+ + + L SL L N ++ P
Sbjct: 122 QITDI--DPLKNLTNL-----NRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP 171
Query: 164 YSFGNLTKLVTLYLDTNALSG-SIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXX 222
NLT L L + +N +S S+ ++ NL+SL NN +S PL +
Sbjct: 172 --LANLTTLERLDISSNKVSDISVLAKLTNLESLI---ATNNQISDITPLGI----LTNL 222
Query: 223 XYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSI 282
S+N + +L +L+DL L+ N ++ PL+ LTKL L L N++S
Sbjct: 223 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNIS 280
Query: 283 SLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLK 342
L A LT+LTNL L EN L D I ++K+L+ L L N + S + +++LT L+
Sbjct: 281 PL--AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNI--SDISPVSSLT-KLQ 333
Query: 343 VLYLSSNHI-----------VGEIPLGHGKFSSLIQL 368
L+ ++N + + + GH + S L L
Sbjct: 334 RLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPL 370
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 132/280 (47%), Gaps = 63/280 (22%)
Query: 113 IRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKL 172
I +E+L++L + + N L+D+ P + NL L D+ ++ N ++ P NLT L
Sbjct: 60 IDGVEYLNNLTQ--INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 113
Query: 173 VTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSG 232
L L N ++ D ++NL +L L+L +NT+S ++ALSG
Sbjct: 114 TGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS------------------DISALSG 153
Query: 233 -------SIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLS 285
S N++T+L+ PLA NLT L L +S NK+S IS+
Sbjct: 154 LTSLQQLSFGNQVTDLK----------------PLA--NLTTLERLDISSNKVS-DISV- 193
Query: 286 YASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG-SILLSLANLTNSLKVL 344
A LT+L +L N + D +G + +L L L+ N+L L SL NLT+ L
Sbjct: 194 LAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTD----L 247
Query: 345 YLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELG 384
L++N I PL + L +L L N++S +SP G
Sbjct: 248 DLANNQISNLAPLSG--LTKLTELKLGANQISN-ISPLAG 284
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 160/337 (47%), Gaps = 44/337 (13%)
Query: 44 LTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHIN 103
L +L+ I SNN L+ P +++L L D+ + NN + P L NLTNL L L N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 104 ALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP 163
++ + D ++NL L N L N +SD+ + + L SL L N ++ P
Sbjct: 123 QITDI--DPLKNLTNL-----NRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP 172
Query: 164 YSFGNLTKLVTLYLDTNALSG-SIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXX 222
NLT L L + +N +S S+ ++ NL+SL NN +S PL +
Sbjct: 173 --LANLTTLERLDISSNKVSDISVLAKLTNLESLI---ATNNQISDITPLGI----LTNL 223
Query: 223 XYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSI 282
S+N + +L +L+DL L+ N ++ PL+ LTKL L L N++S
Sbjct: 224 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNIS 281
Query: 283 SLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLK 342
L A LT+LTNL L EN L D I ++K+L+ L L N + S + +++LT L+
Sbjct: 282 PL--AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNI--SDISPVSSLT-KLQ 334
Query: 343 VLYLSSNHI-----------VGEIPLGHGKFSSLIQL 368
L+ +N + + + GH + S L L
Sbjct: 335 RLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 371
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 132/280 (47%), Gaps = 63/280 (22%)
Query: 113 IRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKL 172
I +E+L++L + + N L+D+ P + NL L D+ ++ N ++ P NLT L
Sbjct: 61 IDGVEYLNNLTQ--INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 114
Query: 173 VTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSG 232
L L N ++ D ++NL +L L+L +NT+S ++ALSG
Sbjct: 115 TGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS------------------DISALSG 154
Query: 233 -------SIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLS 285
S N++T+L+ PLA NLT L L +S NK+S IS+
Sbjct: 155 LTSLQQLSFGNQVTDLK----------------PLA--NLTTLERLDISSNKVS-DISV- 194
Query: 286 YASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG-SILLSLANLTNSLKVL 344
A LT+L +L N + D +G + +L L L+ N+L L SL NLT+ L
Sbjct: 195 LAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTD----L 248
Query: 345 YLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELG 384
L++N I PL + L +L L N++S +SP G
Sbjct: 249 DLANNQISNLAPLSG--LTKLTELKLGANQISN-ISPLAG 285
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L NQ+S + P + L++ L L N L+ P + NL +L+Y+ + N +S
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325
Query: 62 PNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSD 121
P V SL L L YNN K S SSL NLTN+ L N +S L P + NL ++
Sbjct: 326 P--VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379
Query: 122 LIYNYLIYWINALSDL-----IPNEIGNL 145
L N W NA + IPN + N+
Sbjct: 380 LGLNDQ-AWTNAPVNYKANVSIPNTVKNV 407
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 160/337 (47%), Gaps = 44/337 (13%)
Query: 44 LTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHIN 103
L +L+ I SNN L+ P +++L L D+ + NN + P L NLTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 104 ALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP 163
++ + D ++NL L N L N +SD+ + + L SL L N ++ P
Sbjct: 118 QITDI--DPLKNLTNL-----NRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP 167
Query: 164 YSFGNLTKLVTLYLDTNALSG-SIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXX 222
NLT L L + +N +S S+ ++ NL+SL NN +S PL +
Sbjct: 168 --LANLTTLERLDISSNKVSDISVLAKLTNLESLI---ATNNQISDITPLGI----LTNL 218
Query: 223 XYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSI 282
S+N + +L +L+DL L+ N ++ PL+ LTKL L L N++S
Sbjct: 219 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNIS 276
Query: 283 SLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLK 342
L A LT+LTNL L EN L D I ++K+L+ L L N N S + +++LT L+
Sbjct: 277 PL--AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFN--NISDISPVSSLT-KLQ 329
Query: 343 VLYLSSNHI-----------VGEIPLGHGKFSSLIQL 368
L+ +N + + + GH + S L L
Sbjct: 330 RLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPL 366
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 130/273 (47%), Gaps = 49/273 (17%)
Query: 113 IRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKL 172
I +E+L++L + + N L+D+ P + NL L D+ ++ N ++ P NLT L
Sbjct: 56 IDGVEYLNNLTQ--INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 109
Query: 173 VTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSG 232
L L N ++ D ++NL +L L+L +NT+S ++ALSG
Sbjct: 110 TGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS------------------DISALSG 149
Query: 233 SIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSL 292
L SL L N + PLA NLT L L +S NK+S IS+ A LT+L
Sbjct: 150 --------LTSLQQLNFG-NQVTDLKPLA--NLTTLERLDISSNKVS-DISV-LAKLTNL 196
Query: 293 TNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG-SILLSLANLTNSLKVLYLSSNHI 351
+L N + D +G + +L L L+ N+L L SL NLT+ L L++N I
Sbjct: 197 ESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGTLASLTNLTD----LDLANNQI 250
Query: 352 VGEIPLGHGKFSSLIQLILTNNELSGQLSPELG 384
PL + L +L L N++S +SP G
Sbjct: 251 SNLAPLSG--LTKLTELKLGANQISN-ISPLAG 280
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L NQ+S + P + L++ L L N L+ P + NL +L+Y+ + N +S
Sbjct: 265 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 320
Query: 62 PNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSD 121
P V SL L L YNN K S SSL NLTN+ L N +S L P + NL ++
Sbjct: 321 P--VSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 374
Query: 122 LIYNYLIYWINALSDL-----IPNEIGNL 145
L N W NA + IPN + N+
Sbjct: 375 LGLNDQ-AWTNAPVNYKANVSIPNTVKNV 402
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 91/238 (38%), Gaps = 33/238 (13%)
Query: 76 LYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINA-L 134
L+ N + +S NL L LH N L+ + L L L + NA L
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS-----DNAQL 93
Query: 135 SDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLK 194
+ P L L L LD L P F L L LYL NAL D R+L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 195 SLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNE-ITNLRSLSDLQLSENT 253
+L +L L N +S S+P L SL L L +N
Sbjct: 154 NLTHLFLHGNRIS-------------------------SVPERAFRGLHSLDRLLLHQNR 188
Query: 254 LNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENS-LCDSIQKEI 310
+ P A +L +L+ LYL N LS + + A L +L L L +N +CD + +
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 29/206 (14%)
Query: 123 IYNYLIYWI--NALSDLIPNEIGNLKSLSDLRLDYNTLSGSI-PYSFGNLTKLVTLYLDT 179
N I W+ N L+ + L L L L N S+ P +F L +L TL+LD
Sbjct: 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114
Query: 180 NALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNE-I 238
L P R L +L L L +N L ++P++
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQ-------------------------ALPDDTF 149
Query: 239 TNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLY 298
+L +L+ L L N ++ A L L L L N+++ ++ L L LYL+
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 299 ENSLCDSIQKEIGDMKSLSILDLSSN 324
N+L + + +++L L L+ N
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDN 235
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Query: 235 PNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTN 294
P L L L L L P L L LYL N L ++ L +LT+
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 295 LYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSN 349
L+L+ N + ++ + SL L L N++ + +L L LYL +N
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLFAN 211
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 91/238 (38%), Gaps = 33/238 (13%)
Query: 76 LYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINA-L 134
L+ N + +S NL L LH N L+ + L L L + NA L
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS-----DNAQL 92
Query: 135 SDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLK 194
+ P L L L LD L P F L L LYL NAL D R+L
Sbjct: 93 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 152
Query: 195 SLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNE-ITNLRSLSDLQLSENT 253
+L +L L N +S S+P L SL L L +N
Sbjct: 153 NLTHLFLHGNRIS-------------------------SVPERAFRGLHSLDRLLLHQNR 187
Query: 254 LNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENS-LCDSIQKEI 310
+ P A +L +L+ LYL N LS + + A L +L L L +N +CD + +
Sbjct: 188 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 245
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 29/206 (14%)
Query: 123 IYNYLIYWI--NALSDLIPNEIGNLKSLSDLRLDYNTLSGSI-PYSFGNLTKLVTLYLDT 179
N I W+ N L+ + L L L L N S+ P +F L +L TL+LD
Sbjct: 54 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 113
Query: 180 NALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNE-I 238
L P R L +L L L +N L ++P++
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNALQ-------------------------ALPDDTF 148
Query: 239 TNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLY 298
+L +L+ L L N ++ A L L L L N+++ ++ L L LYL+
Sbjct: 149 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 208
Query: 299 ENSLCDSIQKEIGDMKSLSILDLSSN 324
N+L + + +++L L L+ N
Sbjct: 209 ANNLSALPTEALAPLRALQYLRLNDN 234
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Query: 235 PNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTN 294
P L L L L L P L L LYL N L ++ L +LT+
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 295 LYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSN 349
L+L+ N + ++ + SL L L N++ + +L L LYL +N
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLFAN 210
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSL-GNLTSLSYIGISNNLLSGS 60
L + N+L L +L + L L N LK S+PP + +LT L+Y+ + N L S
Sbjct: 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-S 147
Query: 61 IPNEV-ESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFL 119
+P V + L SL +LRLYNN LK + LT L L L N L + +LE L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Query: 120 S---------DLIYNYLIY---WINALSD 136
D N +IY W+ +D
Sbjct: 208 KMLQLQENPWDCTCNGIIYMAKWLKKKAD 236
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 85/200 (42%), Gaps = 27/200 (13%)
Query: 151 LRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEI-RNLKSLFNLQLDNNTLSGS 209
L L N LS +F LTKL LYL+ N L ++P I + LK+L L + +N L +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99
Query: 210 IPLSLGXXXXXXXXYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLV 269
+P+ + L +L++L+L N L P +LTKL
Sbjct: 100 LPIGV-----------------------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 270 VLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGS 329
L L N+L + LTSL L LY N L + + L L L +N+L
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 330 ILLSLANLTNSLKVLYLSSN 349
+ +L LK+L L N
Sbjct: 197 PEGAFDSL-EKLKMLQLQEN 215
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Query: 84 SIPS-SLGNLTNLVNLHLHINALSGL---IPDEIRNLEFLSDLIYNYLIYWI--NALSDL 137
S+PS + LT L L+L+ N L L I E++NLE L W+ N L L
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL----------WVTDNKLQAL 100
Query: 138 IPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEI-RNLKSL 196
L +L++LRLD N L P F +LTKL L L N L S+P + L SL
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSL 159
Query: 197 FNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNEITNLRSLSDLQLSEN---- 252
L+L NN L + N L +L L LQL EN
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219
Query: 253 TLNGSIPLA 261
T NG I +A
Sbjct: 220 TCNGIIYMA 228
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 6 KNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEV 65
+NQL L +L++ L+L N L+ LT+L+ + +S N L S+P V
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGV 176
Query: 66 -ESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIY 124
+ L L DLRLY N LK LT+L + LH N P IR
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-IR---------- 225
Query: 125 NYLIYWINALSDLIPNEIGNL 145
YL WIN S ++ N G++
Sbjct: 226 -YLSEWINKHSGVVRNSAGSV 245
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Query: 44 LTSLSYIGISNNLLSGSIPNEVESLKSLSDLR---LYNNTLKGSIPSSL-GNLTNLVNLH 99
L ++ Y+ + N L +++ +LK L++L L N L+ S+P+ + LTNL L
Sbjct: 62 LPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 100 LHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLS 159
L N L L PD + + L++L Y L + N L L L +L++L L YN L
Sbjct: 116 LVENQLQSL-PDGV--FDKLTNLTYLNLAH--NQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
Query: 160 GSIPYSFGNLTKLVTLYLDTNALSGSIPDEI-RNLKSLFNLQLDNNTLSGSIP 211
F LT+L L L N L S+PD + L SL + L +N + P
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSL-GNLTSLSYIGISNNLLSGS 60
L S NQL L +L+ L LY N LK S+P + LTSL YI + +N +
Sbjct: 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 220
Query: 61 IP 62
P
Sbjct: 221 CP 222
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 261 ALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILD 320
AL LT L L L+ N+L + + LT+L L L EN L + +L+ L+
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 321 LSSNKLNG---SILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQL 368
L+ N+L + L NLT L LS N + L G F L QL
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTE----LDLSYNQLQS---LPEGVFDKLTQL 183
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 111/265 (41%), Gaps = 44/265 (16%)
Query: 131 INALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYS-FGNLTKLVTLYLDTNALSGSIPDE 189
NA+ L P+ N+ L+ L L+ N LS S+P F N KL TL + N L D
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160
Query: 190 IRNLKSLFNLQLDNNTLSG----------------------SIPLSLGXXXXXXXXYFSM 227
+ SL NLQL +N L+ +IP+++ + S+
Sbjct: 161 FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE---ELDASHNSI 217
Query: 228 NALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYA 287
N + G + E+T L+ L N L + L N LV + LS N+L + +
Sbjct: 218 NVVRGPVNVELTILK------LQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFV 269
Query: 288 SLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKL-----NGSILLSLANL---TN 339
+ L LY+ N L ++ + +L +LDLS N L N L NL N
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328
Query: 340 SLKVLYLSSNHIVGEIPLGHGKFSS 364
S+ L LS++H + + L H +
Sbjct: 329 SIVTLKLSTHHTLKNLTLSHNDWDC 353
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 96/239 (40%), Gaps = 35/239 (14%)
Query: 76 LYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLS--DLIYNYLIYWINA 133
L+ N + +S + NL L LH NAL+G+ L L DL N + ++
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD- 96
Query: 134 LSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPD-EIRN 192
P L L L LD L P F L L LYL N L ++PD R+
Sbjct: 97 -----PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRD 150
Query: 193 LKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNEITNLRSLSDLQLSEN 252
L +L +L L N + S+P +A G L SL L L +N
Sbjct: 151 LGNLTHLFLHGNRIP-SVP---------------EHAFRG--------LHSLDRLLLHQN 186
Query: 253 TLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENS-LCDSIQKEI 310
+ P A +L +L+ LYL N LS + L SL L L +N +CD + +
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPL 245
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 71/181 (39%), Gaps = 1/181 (0%)
Query: 145 LKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNA-LSGSIPDEIRNLKSLFNLQLDN 203
++L+ L L N L+G +F LT L L L NA L P R L L L LD
Sbjct: 54 CRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDR 113
Query: 204 NTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALG 263
L P Y N L N +L +L+ L L N + A
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFR 173
Query: 264 NLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSS 323
L L L L N ++ ++ L L LYL+ N+L + + ++SL L L+
Sbjct: 174 GLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
Query: 324 N 324
N
Sbjct: 234 N 234
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 64/185 (34%), Gaps = 24/185 (12%)
Query: 165 SFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXY 224
SF + L L+L +NAL+G L L L L +N
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA------------------- 90
Query: 225 FSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISL 284
L P L L L L L P L L LYL N L
Sbjct: 91 ----QLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDN 146
Query: 285 SYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVL 344
++ L +LT+L+L+ N + + + SL L L N + + +L L L
Sbjct: 147 TFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDL-GRLMTL 205
Query: 345 YLSSN 349
YL +N
Sbjct: 206 YLFAN 210
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 119/291 (40%), Gaps = 44/291 (15%)
Query: 105 LSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPY 164
L+ L +EI F L NA+ L P+ N+ L+ L L+ N LS S+P
Sbjct: 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 140
Query: 165 S-FGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSG--------------- 208
F N KL TL + N L D + SL NLQL +N L+
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 200
Query: 209 -------SIPLSLGXXXXXXXXYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLA 261
+IP+++ + S+N + G + E+T L+ L N L +
Sbjct: 201 YNLLSTLAIPIAVE---ELDASHNSINVVRGPVNVELTILK------LQHNNLTDTA--W 249
Query: 262 LGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDL 321
L N LV + LS N+L + + + L LY+ N L ++ + +L +LDL
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308
Query: 322 SSNKL-----NGSILLSLANL---TNSLKVLYLSSNHIVGEIPLGHGKFSS 364
S N L N L NL NS+ L LS++H + + L H +
Sbjct: 309 SHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 359
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 121/266 (45%), Gaps = 26/266 (9%)
Query: 41 LGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLR-LYNNTLKGSIPSSLGNLTNLVNLH 99
L NL L+ + I N ++ ++ +L++L++LR LY N S S L NLT +L+
Sbjct: 84 LSNLVKLTNLYIGTNKIT-----DISALQNLTNLRELYLNEDNISDISPLANLTKXYSLN 138
Query: 100 LHINA-LSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTL 158
L N LS L P + N L NYL + + D+ P I NL L L L+YN +
Sbjct: 139 LGANHNLSDLSP--LSNXTGL-----NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189
Query: 159 SGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXX 218
P +LT L N ++ P + N L +L++ NN ++ PL+
Sbjct: 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSPLA----N 241
Query: 219 XXXXXYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKL 278
+ + S N + +L L L + N + S L NL++L L+L+ N+L
Sbjct: 242 LSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQI--SDISVLNNLSQLNSLFLNNNQL 299
Query: 279 SGSISLSYASLTSLTNLYLYENSLCD 304
LT+LT L+L +N + D
Sbjct: 300 GNEDXEVIGGLTNLTTLFLSQNHITD 325
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 21/206 (10%)
Query: 9 LSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESL 68
LS L P + + N L++ + +K P + NLT L + ++ N + P + SL
Sbjct: 145 LSDLSP--LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASL 198
Query: 69 KSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLI 128
SL Y N + P + N T L +L + N ++ L P + NL L+ +L
Sbjct: 199 TSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLT-----WLE 249
Query: 129 YWINALSDLIPNEIGNLKSLSDLRLDYNTLSG-SIPYSFGNLTKLVTLYLDTNALSGSIP 187
N +SD+ N + +L L L + N +S S+ NL++L +L+L+ N L
Sbjct: 250 IGTNQISDI--NAVKDLTKLKXLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDX 304
Query: 188 DEIRNLKSLFNLQLDNNTLSGSIPLS 213
+ I L +L L L N ++ PL+
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIRPLA 330
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 71/171 (41%), Gaps = 42/171 (24%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGN-LTSLSYIGISNNLLSGS 60
L N L L L+S L L N L+ S+P + N LTSL+Y+ +S N L S
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-S 90
Query: 61 IPNEV-------------------------ESLKSLSDLRLYNNTLKGSIPSSL-GNLTN 94
+PN V + L L DLRLY N LK S+P + LT+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTS 149
Query: 95 LVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNL 145
L + LH N P IR YL WIN S ++ N G++
Sbjct: 150 LQYIWLHDNPWDCTCPG-IR-----------YLSEWINKHSGVVRNSAGSV 188
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 224 YFSMNALSGSIPNEITN-LRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSI 282
Y N L S+PN + N L SL+ L LS N L LT+L L L+ N+L
Sbjct: 58 YLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116
Query: 283 SLSYASLTSLTNLYLYENSL 302
+ LT L +L LY+N L
Sbjct: 117 DGVFDKLTQLKDLRLYQNQL 136
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 244 LSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLC 303
L+ L L+ N+L +P + NL+ L VL LS N+L+ S+ S L Y ++N +
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MV 305
Query: 304 DSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFS 363
++ E G++ +L L + N L L L + + + YL N EIPL H +
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR--PEIPLPHER-- 361
Query: 364 SLIQLILTNNELSGQLSPELGSLIQ 388
+ I N + G+ E SL Q
Sbjct: 362 ---RFIEINTD--GEPQREYDSLQQ 381
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 71 LSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLS--DLIYNYLI 128
LS+L+++N I +++ L L+L+ N+L+ L P EI+NL L DL +N L
Sbjct: 231 LSNLQIFN------ISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT 283
Query: 129 YWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSI 186
+P E+G+ L ++ + ++P+ FGNL L L ++ N L
Sbjct: 284 S--------LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGS 60
+L S N+L+ L P E+G + N + ++P GNL +L ++G+ N L
Sbjct: 274 VLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQ 331
Query: 61 IPNEVESLKSLSDLRLYNNTLKGSIP 86
++ + KS++ L Y + IP
Sbjct: 332 F-LKILTEKSVTGLIFYLRDNRPEIP 356
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 23/124 (18%)
Query: 26 LSLYSNFLKGSI----PPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81
L+L SN L GS+ PP + L + NN + SIP +V L++L +L + +N L
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKVL------DLHNNRI-MSIPKDVTHLQALQELNVASNQL 485
Query: 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNE 141
K LT+L + LH N P IR YL WIN S ++ N
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-IR-----------YLSEWINKHSGVVRNS 533
Query: 142 IGNL 145
G++
Sbjct: 534 AGSV 537
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 7/152 (4%)
Query: 243 SLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSG--SISLSYASLTSLTNLYLYEN 300
S + L ++N S+ L +L L L N L ++L +++SL L + N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 301 SL-CDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGH 359
SL + + +S+ +L+LSSN L GS+ L +KVL L +N I+ IP
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIMS-IPKDV 469
Query: 360 GKFSSLIQLILTNNELSGQLSPELGSLIQLEY 391
+L +L + +N+L L L+Y
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQY 501
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 30/180 (16%)
Query: 124 YNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSF--GNLTKLVTLYLDTNA 181
+ +L + N +D + LK L L L N L + N++ L TL + N+
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 182 LSGSIPDEIRNL-KSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNEITN 240
L+ D +S+ L L +N L+GS+ L + N SIP ++T+
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSIPKDVTH 471
Query: 241 LRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYEN 300
L++L +L ++ N L S+P + + LTSL ++L++N
Sbjct: 472 LQALQELNVASNQLK-SVPDGV-----------------------FDRLTSLQYIWLHDN 507
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%)
Query: 137 LIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSL 196
L+P E+ N K L+ + L N +S SF N+T+L+TL L N L P LKSL
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 197 FNLQLDNNTLS 207
L L N +S
Sbjct: 105 RLLSLHGNDIS 115
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 234 IPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLT 293
+P E++N + L+ + LS N ++ + N+T+L+ L LS N+L ++ L SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 294 NLYLYENSLCDSIQKEIGDMKSLSILDLSSNKL 326
L L+ N + + D+ +LS L + +N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 292 LTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHI 351
+T LYL N + KE+ + K L+++DLS+N+++ S +N+T L L LS N +
Sbjct: 33 VTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL-TLILSYNRL 90
Query: 352 VGEIPLGHGKFSSLIQLILTNNELS 376
P SL L L N++S
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 229 ALSGSIPNEITNLRSLSDLQ---LSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLS 285
AL G+ ++I+ L+ L++L L+ N L LT L L L N+L
Sbjct: 69 ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 286 YASLTSLTNLYLYENSLCDSIQKEIGD-MKSLSILDLSSNKLNGSILLSLANLTNSLKVL 344
+ LT+LT LYLY N L S+ K + D + +L+ LDL +N+L S+ + + LK L
Sbjct: 129 FDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQL 186
Query: 345 YLSSNHIVGEIPLG-HGKFSSLIQLILTNNELSGQLS 380
L+ N + +P G + +SL + L NN S
Sbjct: 187 SLNDNQL-KSVPDGVFDRLTSLTHIWLLNNPWDCACS 222
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 7 NQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEV- 65
NQL L +L++ L L N L+ LT+L+Y+ + +N L S+P V
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVF 153
Query: 66 ESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYN 125
+ L +L+ L L NN L+ LT L L L+ N L +PD + + L+ L +
Sbjct: 154 DKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGV--FDRLTSLTHI 210
Query: 126 YLI--YWINALSDLI 138
+L+ W A SD++
Sbjct: 211 WLLNNPWDCACSDIL 225
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 6 KNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEV 65
+NQL L +L++ L LY N L+ LT+L+ + + NN L S+P V
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGV 176
Query: 66 -ESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHL 100
+ L L L L +N LK LT+L ++ L
Sbjct: 177 FDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 10/222 (4%)
Query: 132 NALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIR 191
N ++++ + NLK+L L L N +S P +F L KL LYL N L +P+++
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP 120
Query: 192 NLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGS-IPN-EITNLRSLSDLQL 249
K+L L++ N ++ N L S I N ++ LS +++
Sbjct: 121 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 250 SENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKE 309
++ + +IP L L L+L NK++ + S L +L L L NS+
Sbjct: 179 ADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 310 IGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHI 351
+ + L L L++NKL + LA+ ++V+YL +N+I
Sbjct: 236 LANTPHLRELHLNNNKL-VKVPGGLAD-HKYIQVVYLHNNNI 275
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 104/251 (41%), Gaps = 24/251 (9%)
Query: 36 SIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNL 95
+P L T+L + + NN ++ + ++LK+L L L NN + P + L L
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 96 VNLHLHINALSGL---IPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGN--LKSLSD 150
L+L N L L +P ++ L + I N L+ +I E+G LKS
Sbjct: 103 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--- 159
Query: 151 LRLDYNTLSGSIPYSFGNLTKLVTLYL-DTNALSGSIPDEIRNLKSLFNLQLDNNTLSGS 209
SG +F + KL + + DTN +IP + SL L LD N ++
Sbjct: 160 --------SGIENGAFQGMKKLSYIRIADTNIT--TIPQGLP--PSLTELHLDGNKITKV 207
Query: 210 IPLSLGXXXXXXXXYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLV 269
SL S N++S + N L +L L+ N L +P L + +
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQ 266
Query: 270 VLYLSINKLSG 280
V+YL N +S
Sbjct: 267 VVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 10/222 (4%)
Query: 132 NALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIR 191
N ++++ + NLK+L L L N +S P +F L KL LYL N L +P+++
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP 120
Query: 192 NLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGS-IPN-EITNLRSLSDLQL 249
K+L L++ N ++ N L S I N ++ LS +++
Sbjct: 121 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 250 SENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKE 309
++ + +IP L L L+L NK++ + S L +L L L NS+
Sbjct: 179 ADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 310 IGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHI 351
+ + L L L++NKL + LA+ ++V+YL +N+I
Sbjct: 236 LANTPHLRELHLNNNKL-VKVPGGLAD-HKYIQVVYLHNNNI 275
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 104/251 (41%), Gaps = 24/251 (9%)
Query: 36 SIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNL 95
+P L T+L + + NN ++ + ++LK+L L L NN + P + L L
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 96 VNLHLHINALSGL---IPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGN--LKSLSD 150
L+L N L L +P ++ L + I N L+ +I E+G LKS
Sbjct: 103 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--- 159
Query: 151 LRLDYNTLSGSIPYSFGNLTKLVTLYL-DTNALSGSIPDEIRNLKSLFNLQLDNNTLSGS 209
SG +F + KL + + DTN +IP + SL L LD N ++
Sbjct: 160 --------SGIENGAFQGMKKLSYIRIADTNIT--TIPQGLP--PSLTELHLDGNKITKV 207
Query: 210 IPLSLGXXXXXXXXYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLV 269
SL S N++S + N L +L L+ N L +P L + +
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQ 266
Query: 270 VLYLSINKLSG 280
V+YL N +S
Sbjct: 267 VVYLHNNNISA 277
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 234 IPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLT 293
+P+ T LR+L+ L LS+ L P A +L+ L VL ++ N+L + LTSL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 294 NLYLYENSL---CDSI-----------QKEIGDMKS 315
++L+ N C I QKE G K
Sbjct: 522 KIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 557
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSL-GNLTSLSYIGISNNLLSG 59
L S+ QL L P LSS L++ SN LK S+P + LTSL I + N
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 532
Query: 60 SIPN 63
S P
Sbjct: 533 SCPR 536
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 243 SLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSL 302
L +L L+ L G +P + L L L LS+N +S A+ SLT+LY+ N
Sbjct: 276 QLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV- 333
Query: 303 CDSIQKEIGDMKS---LSILDLSSNKLNGSILLS--LANLTNSLKVLYLSSNHIVG 353
+ +G ++ L LDLS N + S S L NL++ L+ L LS N +G
Sbjct: 334 -KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSH-LQTLNLSHNEPLG 387
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 261 ALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKE--IGDMKSLSI 318
A NL L +L L +K+ ++ L L L LY L D++ K+ ++K+L+
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 319 LDLSSNKLNGSILLSLANLTNSLKVLYLSSNHI--VGEIPLGHGKFSSLIQLILTNNELS 376
LDLS N++ L NSLK + SSN I V E L + +L L N L
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187
Query: 377 GQLSPELGSLI 387
++S + G +
Sbjct: 188 SRVSVDWGKCM 198
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 39 PSLGNLTSLSYIGISNNLLSGSIPNEVESL--KSLSDLRLYNNTLKGSIPSSLGNLTN-L 95
PS G L SL I S+N + +E+E L K+LS L N+L + G N
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 96 VNLHLHINALSG 107
N+ L I +SG
Sbjct: 202 RNMVLEILDVSG 213
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 166 FGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSG-SIPLSLGXXXXXXXXY 224
FG L LV L L N L+G P+ + LQL N + S + LG
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 225 FSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLA 261
+ N +S +P +L SL+ L L+ N N + LA
Sbjct: 110 YD-NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 226 SMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLS 285
S + L G +P+ L L+L N L G P A + + L L NK+ +
Sbjct: 45 SSDGLFGRLPH-------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97
Query: 286 YASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLS 333
+ L L L LY+N + + + SL+ L+L+SN N + L+
Sbjct: 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 16 EIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLR 75
E+GR+SS +GL G L L + + N L+G PN E + +L+
Sbjct: 40 ELGRISS-DGL--------------FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84
Query: 76 LYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDL 122
L N +K L L L+L+ N +S ++P +L L+ L
Sbjct: 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L +NQL+G+ P+ S L L N +K L L + + +N +S +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 62 PNEVESLKSLSDLRLYNN 79
P E L SL+ L L +N
Sbjct: 119 PGSFEHLNSLTSLNLASN 136
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 231 SGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLT 290
S + P++ + + D + + + S+P G T +LYL N+++ + SL
Sbjct: 10 SAACPSQCSCSGTTVDCR---SKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLI 64
Query: 291 SLTNLYLYENSLCDSIQKEIGD-MKSLSILDLSSNKLNGSILLSLA-NLTNSLKVLYLSS 348
+L LYL N L ++ + D + L++LDL +N+L ++L S + LK L++
Sbjct: 65 NLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCC 121
Query: 349 NHIVGEIPLGHGKFSSLIQLILTNNEL 375
N + E+P G + + L L L N+L
Sbjct: 122 NKLT-ELPRGIERLTHLTHLALDQNQL 147
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%)
Query: 238 ITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYL 297
T L+ L + NT++ P L L VL L N+LS ++A T+LT L+L
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Query: 298 YENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIL 331
NS+ K+L LDLS N L+ + L
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%)
Query: 238 ITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYL 297
T L+ L + NT++ P L L VL L N+LS ++A T+LT L+L
Sbjct: 55 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 114
Query: 298 YENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIL 331
NS+ K+L LDLS N L+ + L
Sbjct: 115 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 148
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%)
Query: 238 ITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYL 297
T L+ L + NT++ P L L VL L N+LS ++A T+LT L+L
Sbjct: 50 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 109
Query: 298 YENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIL 331
NS+ K+L LDLS N L+ + L
Sbjct: 110 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 143
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 43/190 (22%)
Query: 25 GLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGS 84
GL L N + P L NLT ++ + +S N L + + L+S+ L L + +
Sbjct: 67 GLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV 122
Query: 85 IPSSLGNLTNLVNLHLHINALSGLIP-DEIRNLEFLSDLIYNYLIYWINALSDLIPNEIG 143
P L L+NL L+L +N ++ + P + NL++LS IG
Sbjct: 123 TP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS---------------------IG 159
Query: 144 NLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDN 203
N + +SDL NL+KL TL D N +S P + +L +L + L N
Sbjct: 160 NAQ-VSDLT------------PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204
Query: 204 NTLSGSIPLS 213
N +S PL+
Sbjct: 205 NQISDVSPLA 214
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 238 ITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYL 297
+ NLR L LS N L+ +L L VL L N + ++ + L LYL
Sbjct: 87 VPNLRYLD---LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143
Query: 298 YENSLCDSIQKEIGD---MKSLSILDLSSNKLNGSILLSLANLTNSLK-VLYLSSNHIVG 353
+N + + I D + L +LDLSSNKL L L L +K LYL +N +
Sbjct: 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203
Query: 354 EIPL----GHGKFSSLIQLILTNNELSGQLSPELGSLIQLEY 391
+ L H ++ L ++ +L S +L ++ L++
Sbjct: 204 DCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDF 245
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 20/136 (14%)
Query: 2 LSFSKNQLSGLIPHEI-GRLSSFNGLSLYSNFLKGSIPPSL-GNLTSLSYIGISNNLLSG 59
L N+L L PH + +L+ LSL N ++ S+P + LT L+ + + N L
Sbjct: 33 LELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ- 89
Query: 60 SIPNEV-ESLKSLSDLRLYNNTLKGSIPSSL-GNLTNLVNLHLHINALSGLIPDEIRNLE 117
S+PN V + L L +L L N LK S+P + LT+L + LH N P
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR------ 142
Query: 118 FLSDLIYNYLIYWINA 133
+YL W+N
Sbjct: 143 ------IDYLSRWLNK 152
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 233 SIPNEITNLRSLSDLQLSENTLNGSIPLAL-GNLTKLVVLYLSINKLSGSISLSYASLTS 291
S+P I + S + L+L N L S+P + LT+L L LS N++ + LT
Sbjct: 21 SVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 292 LTNLYLYENSLCDSIQKEIGD-MKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNH 350
LT LYL+EN L S+ + D + L L L +N+L S+ + + SL+ ++L +N
Sbjct: 78 LTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135
Query: 351 IVGEIP 356
P
Sbjct: 136 WDCSCP 141
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 146 KSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNT 205
++++++RL+ NT+ P +F KL + L N +S PD + L+SL +L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 206 LSGSIPLSL 214
++ +P SL
Sbjct: 92 IT-ELPKSL 99
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 42 GNLTSLSYIGISNNLLSG------SIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNL 95
G+L + SNN++ IP + ++++++RL NT+K P + L
Sbjct: 1 GSLHCPAACTCSNNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL 58
Query: 96 VNLHLHINALSGLIPDEIRNLEFLSDLI 123
+ L N +S L PD + L L+ L+
Sbjct: 59 RRIDLSNNQISELAPDAFQGLRSLNSLV 86
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 26 LSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSI 85
+ L N +K P + L I +SNN +S P+ + L+SL+ L LY N + +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 86 PSSL-GNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGN 144
P SL L +L L L+ N ++ L D ++L L N L + N L +
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNL-----NLLSLYDNKLQTIAKGTFSP 150
Query: 145 LKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGS 185
L+++ + L N P+ K + YL TN + S
Sbjct: 151 LRAIQTMHLAQN------PFICDCHLKWLADYLHTNPIETS 185
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 239 TNL-RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYL 297
TNL ++++++L +NT+ P A KL + LS N++S ++ L SL +L L
Sbjct: 28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87
Query: 298 YENSL 302
Y N +
Sbjct: 88 YGNKI 92
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 146 KSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNT 205
++++++RL+ NT+ P +F KL + L N +S PD + L+SL +L L N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 206 LSGSIPLSL 214
++ +P SL
Sbjct: 92 IT-ELPKSL 99
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 26 LSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSI 85
+ L N +K P + L I +SNN +S P+ + L+SL+ L LY N + +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 86 PSSL-GNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGN 144
P SL L +L L L+ N ++ L D ++L L N L + N L +
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL-----NLLSLYDNKLQTIAKGTFSP 150
Query: 145 LKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGS 185
L+++ + L N P+ K + YL TN + S
Sbjct: 151 LRAIQTMHLAQN------PFICDCHLKWLADYLHTNPIETS 185
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 42 GNLTSLSYIGISNNLLSG------SIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNL 95
G+L + SNN++ IP + ++++++RL NT+K P + L
Sbjct: 1 GSLHCPAACTCSNNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL 58
Query: 96 VNLHLHINALSGLIPDEIRNLEFLSDLI 123
+ L N +S L PD + L L+ L+
Sbjct: 59 RRIDLSNNQISELAPDAFQGLRSLNSLV 86
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 239 TNL-RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYL 297
TNL ++++++L +NT+ P A KL + LS N++S ++ L SL +L L
Sbjct: 28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87
Query: 298 YENSL 302
Y N +
Sbjct: 88 YGNKI 92
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 267 KLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKL 326
+ V+ + I ++ S YA+ NLYL+ N CD++ + D +S S+K
Sbjct: 53 QAVIHLVDIAGITSSTPADYAT----KNLYLWNNETCDALSAPVADWNDVSTTPTGSDKY 108
Query: 327 NGSILLSLANLTNSLKVL 344
++ L + + V+
Sbjct: 109 GPYWVIPLTKESGCINVI 126
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSI 61
L + Q++ + P + LS+ L L N + P L LT+L Y+ I NN ++
Sbjct: 118 LDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLT 173
Query: 62 PNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIP 110
P + +L L+ LR +N K S S L +L NL+ +HL N +S + P
Sbjct: 174 P--LANLSKLTTLRADDN--KISDISPLASLPNLIEVHLKDNQISDVSP 218
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 43/198 (21%)
Query: 17 IGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRL 76
I L++ GL L N + P L NLT ++ + +S N L + + L+S+ L L
Sbjct: 65 IQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 120
Query: 77 YNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIP-DEIRNLEFLSDLIYNYLIYWINALS 135
+ + P L L+NL L+L +N ++ + P + NL++LS I N N ++
Sbjct: 121 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS--IGN------NQVN 170
Query: 136 DLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKS 195
DL P NL+KL TL D N +S P + +L +
Sbjct: 171 DLTP--------------------------LANLSKLTTLRADDNKISDISP--LASLPN 202
Query: 196 LFNLQLDNNTLSGSIPLS 213
L + L +N +S PL+
Sbjct: 203 LIEVHLKDNQISDVSPLA 220
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 83 GSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEI 142
S+P+ + T + LHL+IN ++ L P +L L+ YL +N L+ L
Sbjct: 32 ASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLT-----YLNLAVNQLTALPVGVF 84
Query: 143 GNLKSLSDLRLDYNTLSGSIPYS-FGNLTKLVTLYLDTNALSGSIPD 188
L L+ L L N L SIP F NL L +YL N D
Sbjct: 85 DKLTKLTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNNPWDCECSD 130
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 130 WINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDE 189
+IN ++ L P +L L+ L L N L+ F LTKL L L N L SIP
Sbjct: 48 YINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SIPMG 106
Query: 190 I-RNLKSLFNLQLDNN 204
+ NLKSL ++ L NN
Sbjct: 107 VFDNLKSLTHIYLFNN 122
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 208 GSIPLSLGXXXXXXXXYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLAL-GNLT 266
S+P G + +N ++ P +L L+ L L+ N L ++P+ + LT
Sbjct: 32 ASVPA--GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT-ALPVGVFDKLT 88
Query: 267 KLVVLYLSINKLSGSISLSYASLTSLTNLYLYEN 300
KL L L IN+L + +L SLT++YL+ N
Sbjct: 89 KLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 236 NEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNL 295
+E + L +L+L+EN ++ P A NL L L L N+L + L++LT L
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 296 YLYENS---LCDSIQKEIGDMKSLSILD 320
+ EN L D + +++ ++KSL + D
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGD 137
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 224 YFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLAL-GNLTKLVVLYLSINKLSGSI 282
Y + LS + +++T L +L L+ N L S+PL + +LT+L LYL N+L
Sbjct: 68 YNQLQTLSAGVFDDLTELGTLG---LANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 283 SLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN 327
S + LT L L L N L + +L L LS+N+L
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 132 NALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPY-SFGNLTKLVTLYLDTNALSGSIP--- 187
N L L L L +LRL+ N L SIP +F LT L TL L TN L S+P
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA 174
Query: 188 -DEIRNLK--SLFNLQLD 202
D + L+ +LF Q D
Sbjct: 175 FDRLGKLQTITLFGNQFD 192
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 22/155 (14%)
Query: 7 NQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIP-PSLGNLTSLSYIGISNNLLSGSIPNEV 65
NQL L L+ L L +N L S+P +LT L + + N L S+P+ V
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGV 126
Query: 66 -ESLKSLSDLRLYNNTLKGSIPS-SLGNLTNLVNLHLHINALSGLIP----DEIRNLEFL 119
+ L L +LRL N L+ SIP+ + LTNL L L N L +P D + L+ +
Sbjct: 127 FDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTI 184
Query: 120 SDLIYN----------YLIYWINALSDLIPNEIGN 144
+ L N YL WI S+ + + G
Sbjct: 185 T-LFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ 218
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 224 YFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLAL-GNLTKLVVLYLSINKLSGSI 282
Y + LS + +++T L +L L+ N L S+PL + +LT+L LYL N+L
Sbjct: 68 YNQLQTLSAGVFDDLTELGTLG---LANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 283 SLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN 327
S + LT L L L N L + +L L LS+N+L
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 132 NALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPY-SFGNLTKLVTLYLDTNALSGSIP--- 187
N L L L L +LRL+ N L SIP +F LT L TL L TN L S+P
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA 174
Query: 188 -DEIRNLK--SLFNLQLD 202
D + L+ +LF Q D
Sbjct: 175 FDRLGKLQTITLFGNQFD 192
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 22/155 (14%)
Query: 7 NQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIP-PSLGNLTSLSYIGISNNLLSGSIPNEV 65
NQL L L+ L L +N L S+P +LT L + + N L S+P+ V
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGV 126
Query: 66 -ESLKSLSDLRLYNNTLKGSIPS-SLGNLTNLVNLHLHINALSGLIP----DEIRNLEFL 119
+ L L +LRL N L+ SIP+ + LTNL L L N L +P D + L+ +
Sbjct: 127 FDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTI 184
Query: 120 SDLIYN----------YLIYWINALSDLIPNEIGN 144
+ L N YL WI S+ + + G
Sbjct: 185 T-LFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQ 218
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 183 SGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNEITNLR 242
S P + ++L N Q N S+P G + + N ++ P +L
Sbjct: 3 SAGCPSQCSCDQTLVNCQ---NIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLV 57
Query: 243 SLSDLQLSENTLNGSIPLAL-GNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYEN 300
+L L + N L +IP + LT+L L L+ N L ++ +L SLT++YLY N
Sbjct: 58 NLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 83/207 (40%), Gaps = 25/207 (12%)
Query: 132 NALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIR 191
N++ + + +L+ L L+L N + +F L L TL L N L+
Sbjct: 45 NSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFE 104
Query: 192 NLKSLFNLQLDNNTLSGSIP------------LSLGXXXXXXXXYFSMNALSGSIPNEIT 239
L L L L NN + SIP L LG Y S A G +
Sbjct: 105 YLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLE--YISEAAFEG-----LV 156
Query: 240 NLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYE 299
NLR L+ L L IP L L +L L LS N+L S+ LTSL L+L
Sbjct: 157 NLRYLN---LGMCNLK-DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 300 NSLCDSIQKEIGDMKSLSILDLSSNKL 326
+ + D+KSL L+LS N L
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 144 NLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRN-LKSLFNLQLD 202
NL L L L YN + SF L L L LDTN L S+PD I + L SL + L
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 403
Query: 203 NNTLSGSIP 211
N S P
Sbjct: 404 TNPWDCSCP 412
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 132 NALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPD-EI 190
N ++ L P L L+ L LD N L+ F LT+L L L+ N L SIP
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAF 106
Query: 191 RNLKSLFNLQLDNN 204
NLKSL ++ L NN
Sbjct: 107 DNLKSLTHIWLLNN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 132 NALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPD-EI 190
N ++ L P L L+ L LD N L+ F LT+L L L+ N L SIP
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAF 98
Query: 191 RNLKSLFNLQLDNN 204
NLKSL ++ L NN
Sbjct: 99 DNLKSLTHIWLLNN 112
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 83/207 (40%), Gaps = 25/207 (12%)
Query: 132 NALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIR 191
N++ + + +L+ L L+L N + +F L L TL L N L+
Sbjct: 45 NSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFE 104
Query: 192 NLKSLFNLQLDNNTLSGSIP------------LSLGXXXXXXXXYFSMNALSGSIPNEIT 239
L L L L NN + SIP L LG Y S A G +
Sbjct: 105 YLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLE--YISEAAFEG-----LV 156
Query: 240 NLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYE 299
NLR L+ L L IP L L +L L LS N+L S+ LTSL L+L
Sbjct: 157 NLRYLN---LGMCNLK-DIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 300 NSLCDSIQKEIGDMKSLSILDLSSNKL 326
+ + D+KSL L+LS N L
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|4LVE|A Chain A, Len K30t Mutant: A Domain Flip As A Result Of A Single
Amino Acid Substitution
pdb|4LVE|B Chain B, Len K30t Mutant: A Domain Flip As A Result Of A Single
Amino Acid Substitution
Length = 114
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 127 LIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSG------------SIPYSFGNLTKL 172
LIYW + +P+ S +D L ++L S PYSFG TKL
Sbjct: 53 LIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQGTKL 110
>pdb|2LVE|A Chain A, Recombinant Len
Length = 114
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 127 LIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSG------------SIPYSFGNLTKL 172
LIYW + +P+ S +D L ++L S PYSFG TKL
Sbjct: 53 LIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQGTKL 110
>pdb|5LVE|A Chain A, Structure Of The Variable Domain Of Human Immunoglobulin
K-4 Light Chain Len
Length = 114
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 127 LIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSG------------SIPYSFGNLTKL 172
LIYW + +P+ S +D L ++L S PYSFG TKL
Sbjct: 53 LIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCAQYYSTPYSFGQGTKL 110
>pdb|3LVE|A Chain A, Len Q38e Mutant: A Domain Flip From A Single Amino Acid
Substitution
Length = 114
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 127 LIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSG------------SIPYSFGNLTKL 172
LIYW + +P+ S +D L ++L S PYSFG TKL
Sbjct: 53 LIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQGTKL 110
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 132 NALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPD-EI 190
N ++ L P L L+ L LD N L+ F LT+L L L+ N L SIP
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAF 98
Query: 191 RNLKSLFNLQLDNN 204
NL+SL ++ L NN
Sbjct: 99 DNLRSLTHIWLLNN 112
>pdb|1QAC|A Chain A, Change In Dimerization Mode By Removal Of A Single
Unsatisfied Polar Residue
pdb|1QAC|B Chain B, Change In Dimerization Mode By Removal Of A Single
Unsatisfied Polar Residue
Length = 114
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 127 LIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSG------------SIPYSFGNLTKL 172
LIYW + +P+ S +D L ++L S PYSFG TKL
Sbjct: 53 LIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCLQYYSTPYSFGQGTKL 110
>pdb|1EFQ|A Chain A, Q38d Mutant Of Len
Length = 114
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 127 LIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSG------------SIPYSFGNLTKL 172
LIYW + +P+ S +D L ++L S PYSFG TKL
Sbjct: 53 LIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPYSFGQGTKL 110
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 33/215 (15%)
Query: 123 IYNYLIYWINALSDLIPNEIGNLKSLSDLRLDY--NTLSGSIPYSFGNLTKLVTLYLDTN 180
I N+ + + L P++I L LD+ N L+ ++ + G+LT+L TL L N
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPF-----LHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 181 ALS--GSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGXXXXXXXXYFSMNALSGSIPNEI 238
L I + +KSL L + N++S S+N S + + I
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYD---EKKGDCSWTKSLLSLNMSSNILTDTI 415
Query: 239 TNLRSLSD----LQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTN 294
R L L L N + SIP + L L L ++ N+L + LTSL
Sbjct: 416 --FRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Query: 295 LYLYENSL---CDSI-----------QKEIGDMKS 315
++L+ N C I QKE G K
Sbjct: 473 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 507
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 21/115 (18%)
Query: 41 LGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHL 100
+G + YIG NNL + + ++ K L L N L+G +P + G+ L +L+L
Sbjct: 303 VGEKIQIIYIGY-NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNL 360
Query: 101 HINALSGL------IPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLS 149
N ++ + +++ NL F +N L Y IPN I + KS+S
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSF----AHNKLKY--------IPN-IFDAKSVS 402
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 229 ALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYAS 288
AL S+ + T+L L+ L++N +N A LT L L L N+L +
Sbjct: 289 ALLKSVFSHFTDLEQLT---LAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDR 345
Query: 289 LTSLTNLYLYENSL---CDSI-----------QKEIGDMKS 315
LTSL ++L+ N C I QKE G K
Sbjct: 346 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 386
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 26 LSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSI 85
L + N P S L+SL + + N+ +S N + L SL +L L +N L S+
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSL 281
Query: 86 PSSLGN-LTNLVNLHLHIN 103
P L L LV LHLH N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%)
Query: 226 SMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLS 285
+ N L P T L+ L N+++ P L L VL L N+LS +
Sbjct: 33 THNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQT 92
Query: 286 YASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIL 331
+ T+LT L L NS+ + K+L LDLS N L+ + L
Sbjct: 93 FVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKL 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.134 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,151,437
Number of Sequences: 62578
Number of extensions: 402711
Number of successful extensions: 1425
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 363
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)