Query 039650
Match_columns 391
No_of_seqs 189 out of 2832
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 11:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.6E-41 5.6E-46 338.9 24.1 382 2-390 145-550 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.9E-41 8.5E-46 337.6 25.0 383 1-390 168-574 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-37 2.3E-42 271.1 5.5 363 2-372 83-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.5E-37 9.9E-42 267.3 4.6 361 22-390 79-442 (873)
5 KOG0444 Cytoskeletal regulator 100.0 4.3E-31 9.4E-36 232.4 -5.3 367 2-384 12-382 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 4.8E-30 1.1E-34 225.9 -6.4 356 20-390 6-365 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 7.8E-30 1.7E-34 212.9 -6.9 357 2-376 119-541 (565)
8 PLN03210 Resistant to P. syrin 99.9 2.7E-23 5.8E-28 209.6 25.3 344 12-376 549-906 (1153)
9 KOG0472 Leucine-rich repeat pr 99.9 1.3E-27 2.8E-32 199.7 -7.2 364 2-385 50-479 (565)
10 KOG0618 Serine/threonine phosp 99.9 1.4E-26 2.9E-31 212.3 -3.2 371 2-390 26-455 (1081)
11 PLN03210 Resistant to P. syrin 99.9 5.4E-22 1.2E-26 200.2 21.3 334 36-390 549-896 (1153)
12 KOG0618 Serine/threonine phosp 99.9 5.6E-25 1.2E-29 201.8 -3.8 355 2-374 50-487 (1081)
13 KOG4237 Extracellular matrix p 99.8 1E-23 2.2E-28 176.2 -5.1 340 22-373 68-498 (498)
14 KOG4237 Extracellular matrix p 99.8 7.8E-22 1.7E-26 165.0 -5.7 336 45-389 67-490 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 7E-18 1.5E-22 159.3 15.8 259 21-353 201-459 (788)
16 cd00116 LRR_RI Leucine-rich re 99.7 3.7E-19 8.1E-24 156.9 3.0 283 49-374 2-318 (319)
17 cd00116 LRR_RI Leucine-rich re 99.7 6.5E-19 1.4E-23 155.4 4.5 280 25-350 2-318 (319)
18 PRK15387 E3 ubiquitin-protein 99.7 4E-17 8.7E-22 154.2 16.6 260 2-334 206-465 (788)
19 PRK15370 E3 ubiquitin-protein 99.7 1.1E-15 2.5E-20 145.3 13.4 118 147-279 263-380 (754)
20 PRK15370 E3 ubiquitin-protein 99.6 4.1E-15 8.9E-20 141.5 15.5 184 147-352 242-428 (754)
21 KOG0617 Ras suppressor protein 99.5 1.4E-16 3.1E-21 118.7 -4.8 163 18-191 30-193 (264)
22 KOG0617 Ras suppressor protein 99.5 3.1E-16 6.6E-21 116.9 -3.8 157 41-231 29-186 (264)
23 KOG1909 Ran GTPase-activating 99.3 2.8E-13 6E-18 112.6 1.7 239 88-351 25-310 (382)
24 KOG1909 Ran GTPase-activating 99.3 4.5E-13 9.8E-18 111.3 -0.0 238 138-375 22-310 (382)
25 KOG4658 Apoptotic ATPase [Sign 99.2 2E-12 4.3E-17 125.4 1.6 83 20-103 544-628 (889)
26 KOG4658 Apoptotic ATPase [Sign 99.2 9E-12 2E-16 120.9 4.9 95 9-104 559-653 (889)
27 KOG3207 Beta-tubulin folding c 99.1 5.2E-12 1.1E-16 108.1 -1.4 211 143-353 118-340 (505)
28 KOG3207 Beta-tubulin folding c 99.1 1.2E-11 2.7E-16 105.9 0.3 211 166-376 117-339 (505)
29 PF14580 LRR_9: Leucine-rich r 99.1 6E-11 1.3E-15 92.4 3.2 108 216-327 17-126 (175)
30 KOG0532 Leucine-rich repeat (L 99.1 6E-12 1.3E-16 111.3 -3.3 180 194-384 75-254 (722)
31 KOG1259 Nischarin, modulator o 99.1 1.2E-10 2.6E-15 95.4 3.9 129 242-377 284-413 (490)
32 PF14580 LRR_9: Leucine-rich r 99.0 1.3E-09 2.8E-14 85.0 6.3 128 240-372 17-149 (175)
33 PLN03150 hypothetical protein; 98.9 4.2E-09 9.1E-14 100.3 8.0 94 22-115 419-512 (623)
34 KOG1259 Nischarin, modulator o 98.9 9.7E-10 2.1E-14 90.1 2.4 183 138-327 206-412 (490)
35 PF13855 LRR_8: Leucine rich r 98.9 2.5E-09 5.5E-14 68.5 3.5 60 21-80 1-60 (61)
36 KOG2120 SCF ubiquitin ligase, 98.8 3.2E-11 7E-16 98.4 -6.8 193 147-340 186-388 (419)
37 KOG0532 Leucine-rich repeat (L 98.8 5.1E-10 1.1E-14 99.3 -0.3 174 2-190 80-253 (722)
38 COG4886 Leucine-rich repeat (L 98.8 7.1E-09 1.5E-13 94.2 7.1 193 25-255 97-290 (394)
39 COG4886 Leucine-rich repeat (L 98.8 1.4E-08 3.1E-13 92.2 6.8 132 142-279 159-290 (394)
40 PF13855 LRR_8: Leucine rich r 98.8 1E-08 2.2E-13 65.6 4.2 59 267-325 2-60 (61)
41 KOG2120 SCF ubiquitin ligase, 98.7 4.3E-10 9.3E-15 92.0 -4.3 179 195-374 186-374 (419)
42 PLN03150 hypothetical protein; 98.7 4.2E-08 9.2E-13 93.5 7.8 113 267-380 419-532 (623)
43 KOG4341 F-box protein containi 98.7 1E-09 2.2E-14 93.9 -3.3 156 192-347 292-460 (483)
44 KOG2982 Uncharacterized conser 98.5 2.8E-08 6E-13 81.6 1.4 181 141-321 92-286 (418)
45 KOG2982 Uncharacterized conser 98.5 3.3E-08 7.2E-13 81.2 0.6 199 169-369 70-285 (418)
46 KOG0531 Protein phosphatase 1, 98.4 3.5E-08 7.7E-13 89.8 -0.9 62 43-106 70-131 (414)
47 COG5238 RNA1 Ran GTPase-activa 98.3 6.3E-07 1.4E-11 72.9 3.3 233 144-376 28-316 (388)
48 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.6E-13 93.5 -7.5 183 86-279 102-292 (1096)
49 KOG0531 Protein phosphatase 1, 98.2 2.1E-07 4.6E-12 84.8 -0.4 224 142-377 91-319 (414)
50 KOG1859 Leucine-rich repeat pr 98.2 1.4E-07 3.1E-12 86.7 -1.6 179 163-352 102-292 (1096)
51 COG5238 RNA1 Ran GTPase-activa 98.2 1.7E-06 3.6E-11 70.5 4.5 212 166-377 26-286 (388)
52 KOG3665 ZYG-1-like serine/thre 98.0 2.7E-06 5.9E-11 81.3 2.8 82 20-103 147-230 (699)
53 KOG4341 F-box protein containi 98.0 6.6E-08 1.4E-12 83.1 -8.2 247 144-390 188-455 (483)
54 KOG3665 ZYG-1-like serine/thre 98.0 5.2E-06 1.1E-10 79.4 3.3 132 216-349 146-285 (699)
55 KOG1644 U2-associated snRNP A' 97.9 2.6E-05 5.6E-10 60.9 6.3 104 195-300 43-150 (233)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 47.1 2.5 36 340-376 2-37 (44)
57 KOG1644 U2-associated snRNP A' 97.9 2.6E-05 5.6E-10 60.9 5.0 83 243-327 43-126 (233)
58 PF13306 LRR_5: Leucine rich r 97.8 7.6E-05 1.7E-09 56.0 7.2 36 261-298 76-111 (129)
59 KOG4579 Leucine-rich repeat (L 97.8 2.5E-06 5.4E-11 62.1 -1.5 106 243-352 28-136 (177)
60 PF13306 LRR_5: Leucine rich r 97.8 0.0001 2.2E-09 55.3 6.9 106 141-251 7-112 (129)
61 PF12799 LRR_4: Leucine Rich r 97.7 4.5E-05 9.7E-10 44.6 3.5 36 46-82 2-37 (44)
62 KOG4579 Leucine-rich repeat (L 97.7 3.7E-06 8E-11 61.2 -1.8 86 18-106 50-136 (177)
63 KOG1947 Leucine rich repeat pr 97.5 1E-05 2.2E-10 75.8 -2.0 111 144-254 186-307 (482)
64 PRK15386 type III secretion pr 97.5 0.00051 1.1E-08 61.0 8.0 138 214-373 48-187 (426)
65 PRK15386 type III secretion pr 97.4 0.00094 2E-08 59.3 8.9 136 168-324 50-187 (426)
66 KOG2739 Leucine-rich acidic nu 97.4 8.9E-05 1.9E-09 60.4 1.7 89 17-107 39-130 (260)
67 KOG3864 Uncharacterized conser 97.3 5.2E-05 1.1E-09 59.2 -0.2 84 291-374 102-187 (221)
68 KOG2123 Uncharacterized conser 96.9 3.9E-05 8.4E-10 63.0 -4.2 101 241-345 18-123 (388)
69 KOG1947 Leucine rich repeat pr 96.8 0.00045 9.8E-09 64.7 1.3 132 217-348 187-330 (482)
70 KOG2739 Leucine-rich acidic nu 96.7 0.00099 2.1E-08 54.5 2.4 39 241-279 64-104 (260)
71 KOG2123 Uncharacterized conser 95.8 0.0012 2.6E-08 54.5 -1.7 101 265-369 18-123 (388)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.0054 1.2E-07 29.6 0.8 21 364-385 1-21 (22)
73 KOG4308 LRR-containing protein 95.3 0.00028 6.1E-09 64.8 -7.9 91 264-354 202-305 (478)
74 KOG3864 Uncharacterized conser 94.6 0.011 2.3E-07 46.7 0.4 76 314-390 101-179 (221)
75 PF00560 LRR_1: Leucine Rich R 94.4 0.018 4E-07 27.7 0.7 12 47-58 2-13 (22)
76 PF13516 LRR_6: Leucine Rich r 94.4 0.038 8.2E-07 27.2 1.9 21 314-334 2-22 (24)
77 PF13504 LRR_7: Leucine rich r 93.6 0.044 9.5E-07 24.4 1.1 12 364-375 2-13 (17)
78 KOG4308 LRR-containing protein 92.6 0.0013 2.8E-08 60.5 -9.2 203 148-350 89-329 (478)
79 smart00369 LRR_TYP Leucine-ric 88.6 0.33 7.2E-06 24.3 1.5 14 21-34 2-15 (26)
80 smart00370 LRR Leucine-rich re 88.6 0.33 7.2E-06 24.3 1.5 14 21-34 2-15 (26)
81 KOG0473 Leucine-rich repeat pr 88.2 0.0092 2E-07 48.1 -6.6 92 12-106 33-124 (326)
82 smart00368 LRR_RI Leucine rich 87.6 0.84 1.8E-05 23.4 2.6 23 314-336 2-24 (28)
83 KOG3763 mRNA export factor TAP 86.0 0.71 1.5E-05 42.6 3.0 12 289-300 243-254 (585)
84 smart00367 LRR_CC Leucine-rich 85.6 0.88 1.9E-05 22.7 2.1 19 314-332 2-21 (26)
85 KOG3763 mRNA export factor TAP 79.6 0.99 2.1E-05 41.7 1.4 68 286-354 214-285 (585)
86 KOG0473 Leucine-rich repeat pr 79.2 0.076 1.6E-06 43.1 -5.0 88 285-376 37-124 (326)
87 smart00364 LRR_BAC Leucine-ric 76.3 1.8 3.9E-05 21.7 1.2 18 363-381 2-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 59.8 8.8 0.00019 19.3 1.7 12 315-326 3-14 (26)
89 KOG4242 Predicted myosin-I-bin 47.4 1E+02 0.0022 28.6 7.4 278 93-375 165-480 (553)
90 TIGR00864 PCC polycystin catio 22.5 69 0.0015 36.8 2.7 32 3-34 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-41 Score=338.93 Aligned_cols=382 Identities=39% Similarity=0.544 Sum_probs=251.8
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|++++|.+.+..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 56666777666677777777777777777777667777777777777777777777666777777777777777777777
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS 161 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (391)
.+..|..+..+++|++|++++|.+.+..|..+.++.+|+.|.+ ..+.+....+..+.++++|+.|++++|.+...
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-----~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL-----YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC-----cCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 7667777777777777777777777666777777777774433 33444444555566666666666666666555
Q ss_pred CCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchh----
Q 039650 162 IPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNE---- 237 (391)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---- 237 (391)
.|..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..
T Consensus 300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 379 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379 (968)
T ss_pred CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc
Confidence 5555666666666666666665555555556666666666666555444555555555555555555544333443
Q ss_pred --------------------hccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEc
Q 039650 238 --------------------ITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYL 297 (391)
Q Consensus 238 --------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 297 (391)
+..+++|+.|++++|.+.+..+..+..++.|+.+++++|.+.+..+..+..+++|+.|++
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 444444555555555444444444445555555555555554444444445556666666
Q ss_pred CCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEcccccccc
Q 039650 298 YENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSG 377 (391)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 377 (391)
++|.+....+..+ ..++|+.|++++|++++..+..+..+. +|+.|++++|.+.+.+|..+.++++|+.|++++|.+++
T Consensus 460 ~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 537 (968)
T PLN00113 460 ARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537 (968)
T ss_pred cCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh-ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccc
Confidence 6665543333322 346777777777777777777776665 88888888888887888888888889999999998888
Q ss_pred CCCccccccCCCc
Q 039650 378 QLSPELGSLIQLE 390 (391)
Q Consensus 378 ~~~~~~~~~~~L~ 390 (391)
.+|..+..+++|+
T Consensus 538 ~~p~~~~~l~~L~ 550 (968)
T PLN00113 538 QIPASFSEMPVLS 550 (968)
T ss_pred cCChhHhCcccCC
Confidence 8888888888776
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.9e-41 Score=337.62 Aligned_cols=383 Identities=38% Similarity=0.533 Sum_probs=303.9
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
+|++++|.+.+..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 36788888887888888888888888888888877788888888888888888888777788888888888888888888
Q ss_pred cCCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCC
Q 039650 81 LKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSG 160 (391)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 160 (391)
+.+..|..+..+++|++|++++|.+.+..|..+.++.+|+.|.+ ..+.+....+..+.++++|+.|++++|.+..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-----s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL-----SDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC-----cCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 87777888888888888888888877777777777777774433 3344444555555666666666666666555
Q ss_pred CCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCC------------------------CCCCCccccccC
Q 039650 161 SIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNN------------------------TLSGSIPLSLGN 216 (391)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~------------------------~~~~~~~~~~~~ 216 (391)
..+..+..+++|+.|++.+|.+....+..+..+++|+.|++++| .+....+..+..
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 55555555566666666665555444444445555555555444 444444555667
Q ss_pred CCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEE
Q 039650 217 LTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLY 296 (391)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 296 (391)
+++|+.|++.+|.+....+..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+ ..++|+.|+
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ 481 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD 481 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence 7889999999998887788889999999999999999988888878889999999999999886655544 358999999
Q ss_pred cCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccc
Q 039650 297 LYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELS 376 (391)
Q Consensus 297 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 376 (391)
+++|.+....+..+..+++|+.|++++|.+.+..|..+..+. +|+.|++++|.+++.++..+..+++|+.|++++|++.
T Consensus 482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK-KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred CcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc-CCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 999999887888889999999999999999988888887766 9999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCc
Q 039650 377 GQLSPELGSLIQLE 390 (391)
Q Consensus 377 ~~~~~~~~~~~~L~ 390 (391)
+.+|..+..++.|+
T Consensus 561 ~~~p~~l~~l~~L~ 574 (968)
T PLN00113 561 GEIPKNLGNVESLV 574 (968)
T ss_pred ccCChhHhcCcccC
Confidence 99999998888776
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=271.11 Aligned_cols=363 Identities=25% Similarity=0.261 Sum_probs=268.2
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|||++|.+.++-...|.++|+|+.+++..|.++ ..|.......+|+.|++.+|.+.......+..++.|+.|+++.|.+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI 161 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence 788888888777778888888888888888776 5666556667788888888887766666777788888888888887
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS 161 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (391)
+......|..-.++++|++.+|.|++.....|..+..|..+ .+..|.+..+....|+++++|+.|++..|.+...
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl-----kLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL-----KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccccccccccccchheee-----ecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 75444556666778888888888888777777777776633 3444666666677777778888888877777644
Q ss_pred CCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccC
Q 039650 162 IPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNL 241 (391)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (391)
....|..+++|+.|.+..|.+.......|..+.+++.|++..|++......++.++.+|+.|+++.|.+.++....+..+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 45567777788888887777776556667777788888888777776666777777888888888887777777777777
Q ss_pred CCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccC---chhhHhhhCCCCccE
Q 039650 242 RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLC---DSIQKEIGDMKSLSI 318 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~ 318 (391)
++|+.|++++|.++...+..|..+..|++|++++|.+.......|.++++|+.|+++.|.+. +.....|.++++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 78888888888777667777777777888888888777666666777778888888777653 233345667788888
Q ss_pred EEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccc
Q 039650 319 LDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTN 372 (391)
Q Consensus 319 L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 372 (391)
|.+.+|++....-.++.++. +|++|++.+|.+.+.-+.+|..+ .|++|.+..
T Consensus 397 L~l~gNqlk~I~krAfsgl~-~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLE-ALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred eeecCceeeecchhhhccCc-ccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 88888877744444444444 78888888887776677777777 777776654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-37 Score=267.25 Aligned_cols=361 Identities=25% Similarity=0.230 Sum_probs=317.0
Q ss_pred cccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEec
Q 039650 22 SFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLH 101 (391)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 101 (391)
.-+.|++++|.+..+.+..|.++++|+.+.+..|.+. .+|+.....-+|+.|++..|.|.+.-.+.+..++.|+.+|++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 5567999999998888888999999999999999887 888877777789999999999988778889999999999999
Q ss_pred ccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCc
Q 039650 102 INALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNA 181 (391)
Q Consensus 102 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 181 (391)
.|.+..+....|..-.+++ ++.+..|.+.......|..+.+|-.|.++.|+++...+..|.++++|+.|++..|.
T Consensus 158 rN~is~i~~~sfp~~~ni~-----~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIK-----KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hchhhcccCCCCCCCCCce-----EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 9999988777887767777 66777788888888999999999999999999997777788889999999999999
Q ss_pred CCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCcc
Q 039650 182 LSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLA 261 (391)
Q Consensus 182 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 261 (391)
+.-.-...|.++++|+.|.+..|.+.......|..+.+++++++..|.+......++.+++.|+.|++++|.+.......
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 87444567899999999999999998888888999999999999999998778888899999999999999998788888
Q ss_pred ccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchh---HHHHHHhh
Q 039650 262 LGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSI---LLSLANLT 338 (391)
Q Consensus 262 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~---~~~~~~~~ 338 (391)
.+.+++|+.|+++.|.+++..+..|..+..|+.|+++.|.++......|..+.+|+.|++++|.++..+ ...+.. .
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g-l 391 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG-L 391 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc-c
Confidence 899999999999999999999999999999999999999998888888999999999999999987543 334444 4
Q ss_pred ccccEEEcCCCcccCCCcccccCCccccEEEccccccccCCCccccccCCCc
Q 039650 339 NSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSLIQLE 390 (391)
Q Consensus 339 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 390 (391)
++|+.|.+.||++......+|..+++||.|++-+|.+...-|+-+..+ .||
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK 442 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence 599999999999997777899999999999999999885556666665 544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=4.3e-31 Score=232.44 Aligned_cols=367 Identities=28% Similarity=0.391 Sum_probs=293.7
Q ss_pred cccccCccC-CCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 2 LSFSKNQLS-GLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 2 l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
.|+++|-++ +..+.....+.+++-|.+....+. ..|+.++.+.+|++|.+.+|++. .+...++.++.|+.+.+..|.
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNN 89 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccc
Confidence 467888888 567788888999999999988886 68888999999999999999876 555667788899999998887
Q ss_pred cC-CCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCC
Q 039650 81 LK-GSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLS 159 (391)
Q Consensus 81 ~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 159 (391)
+. +-+|..+.++..|+.||+++|++. ..|..++..+++- -+.++.+++..+....|-++..|-.|++++|.+.
T Consensus 90 LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~i-----VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSI-----VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred cccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcE-----EEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 65 356777888999999999999887 5577777777665 4455567777777777778888888999988887
Q ss_pred CCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCC-CCccccccCCCcccEEEccCcccccccchhh
Q 039650 160 GSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLS-GSIPLSLGNLTNLTTLYFSMNALSGSIPNEI 238 (391)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 238 (391)
.+|..+..+..|+.|.+++|.+.......+..+.+|+.|.+++.+.+ +.++..+..+.+|..++++.|.+. ..|..+
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 56777888888999999888876444445566777888888877543 346667777888999999988887 777888
Q ss_pred ccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccC-chhhHhhhCCCCcc
Q 039650 239 TNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLC-DSIQKEIGDMKSLS 317 (391)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~ 317 (391)
..+++|+.|++++|.++ ..........+|++|+++.|+++ ..+..++++++|+.|-+.+|+++ +..+..++.+.+|+
T Consensus 242 y~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 88889999999999887 44445566788999999999887 66777788889999988888864 45667788888899
Q ss_pred EEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccccCCCcccc
Q 039650 318 ILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELG 384 (391)
Q Consensus 318 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 384 (391)
.+..++|.+. -.|+.++.+. .|+.|+++.|++. .+|+.+--++.|+.|++.+|+.. +.|.-..
T Consensus 320 vf~aanN~LE-lVPEglcRC~-kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL-VMPPKP~ 382 (1255)
T KOG0444|consen 320 VFHAANNKLE-LVPEGLCRCV-KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL-VMPPKPN 382 (1255)
T ss_pred HHHhhccccc-cCchhhhhhH-HHHHhccccccee-echhhhhhcCCcceeeccCCcCc-cCCCCcc
Confidence 9999988875 6788888887 8999999999988 78999999999999999999876 5554443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=4.8e-30 Score=225.87 Aligned_cols=356 Identities=28% Similarity=0.388 Sum_probs=282.2
Q ss_pred CCcccEEeecCCcCC-CCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceE
Q 039650 20 LSSFNGLSLYSNFLK-GSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNL 98 (391)
Q Consensus 20 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 98 (391)
+|-.|-+|+++|.+. +.+|.....++.++.|.+..+.+. .+|..+..+.+|++|.++.|.+. .+-..+..+|.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 566778889999877 488888889999999999988886 88999999999999999998877 455567888999999
Q ss_pred Eecccccccc-cchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEc
Q 039650 99 HLHINALSGL-IPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYL 177 (391)
Q Consensus 99 ~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 177 (391)
++++|++... .|..+-.+..|+.+.++ -+++.. .|..+...+++-.|++++|.+.++..+.+.++..|-.|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLS-----hNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLS-----HNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecc-----hhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence 9998877533 46666677777744443 344433 4666777788888999999888777777888888889999
Q ss_pred CCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCccc-ccccchhhccCCCCCEEEcCCCcccC
Q 039650 178 DTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNAL-SGSIPNEITNLRSLSDLQLSENTLNG 256 (391)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~ 256 (391)
++|.+. ..|..+..+.+|+.|++++|.+.......+..+++|+.|.+++..- ....|..+..+.+|..++++.|.+.
T Consensus 158 S~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 158 SNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred ccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence 988887 5666677888899999999887655555566677788888887643 2356777788889999999998886
Q ss_pred ccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccch-hHHHHH
Q 039650 257 SIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGS-ILLSLA 335 (391)
Q Consensus 257 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~ 335 (391)
..|..+..+++|+.|++++|++++ .........+|+.|++++|+++. .+..++.++.|+.|.+.+|+++-+ +|+.++
T Consensus 236 ~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 677888889999999999999884 33444556789999999999854 677788899999999999987743 467777
Q ss_pred HhhccccEEEcCCCcccCCCcccccCCccccEEEccccccccCCCccccccCCCc
Q 039650 336 NLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSLIQLE 390 (391)
Q Consensus 336 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 390 (391)
.+. .|+.+...+|.+. ..|+.+++|+.|++|.++.|++. .+|+.+--++.|+
T Consensus 314 KL~-~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 314 KLI-QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK 365 (1255)
T ss_pred hhh-hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcc
Confidence 776 8899999998887 78999999999999999999988 8888776666654
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=7.8e-30 Score=212.94 Aligned_cols=357 Identities=29% Similarity=0.367 Sum_probs=224.9
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|++++|.++ ..++.+..+..|+.++-.+|.+. ..|+.+..+.++..+++.+|.+. .+|....+++.|++++...|-+
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLL 195 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhh
Confidence 556666666 45556667777777777777775 56666777777777777777776 4444444578888888887766
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS 161 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (391)
+ .+|..++.+.+|.-|++..|++... | .|+.+..|.+++. +.+.+.-..++..++++++..||+..|.++ .
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~-----g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e 266 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHV-----GENQIEMLPAEHLKHLNSLLVLDLRDNKLK-E 266 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHh-----cccHHHhhHHHHhcccccceeeeccccccc-c
Confidence 6 6778888888888888888888743 4 7788888885544 345666555666678899999999999888 6
Q ss_pred CCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCc-------------------------------
Q 039650 162 IPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSI------------------------------- 210 (391)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~------------------------------- 210 (391)
.|..+.-+.+|++|++++|.++ ..+..++++ +|+.|.+.+|.+...-
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 6777777888999999999887 566677887 8888888888653000
Q ss_pred ------cc----cccCCCcccEEEccCcccccccchhhccC--CCCCEEEcCCCcccC----------------------
Q 039650 211 ------PL----SLGNLTNLTTLYFSMNALSGSIPNEITNL--RSLSDLQLSENTLNG---------------------- 256 (391)
Q Consensus 211 ------~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~---------------------- 256 (391)
+. .....-+.+.|.+++-.++....++|..- .....+++++|++..
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 00 00011234445555444443333444322 234556666665541
Q ss_pred -ccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHH
Q 039650 257 -SIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLA 335 (391)
Q Consensus 257 -~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 335 (391)
..+..++.+++|..+++++|.+. ..+..+.....|+.++++.|.+. ..+..+-.+..++.+-.++|++....+..+.
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhh
Confidence 12233344555666666665554 33333344445666666666552 2333333344444444555566544444455
Q ss_pred HhhccccEEEcCCCcccCCCcccccCCccccEEEccccccc
Q 039650 336 NLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELS 376 (391)
Q Consensus 336 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 376 (391)
.+. +|..||+.+|.+- .+|-.+++|.+|++|.+++|++.
T Consensus 503 nm~-nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMR-NLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhh-hcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 444 6777777777666 56666777777777777777765
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.7e-23 Score=209.60 Aligned_cols=344 Identities=20% Similarity=0.214 Sum_probs=256.9
Q ss_pred CchhhhhcCCcccEEeecCCcC------CCCCCCCCCCCC-CccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCC
Q 039650 12 LIPHEIGRLSSFNGLSLYSNFL------KGSIPPSLGNLT-SLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGS 84 (391)
Q Consensus 12 ~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 84 (391)
....+|.++++|+.|.+..+.. ...+|+.+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.++.+. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 4567799999999999976532 225677777775 5999999998876 777776 4689999999999887 6
Q ss_pred CcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCC
Q 039650 85 IPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPY 164 (391)
Q Consensus 85 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 164 (391)
++..+..+++|++++++++......| .++.+++|+.|.+ .++.....++..++++++|+.|++++|.....+|.
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L-----~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL-----SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe-----cCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 77778899999999999875444444 3677788885444 44444455677888999999999998854445665
Q ss_pred CcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCccccc-------ccchh
Q 039650 165 SFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSG-------SIPNE 237 (391)
Q Consensus 165 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~ 237 (391)
.+ ++++|+.|++.+|......+. ...+|+.|+++++.+. ..+..+ .+++|+.|.+.++.... ..+..
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhh
Confidence 44 688999999998865433332 2467899999998876 444433 56788888887643211 11222
Q ss_pred hccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCcc
Q 039650 238 ITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLS 317 (391)
Q Consensus 238 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 317 (391)
...+++|+.|++++|......|..+..+++|+.|++++|...+..+... .+++|+.|++++|......+. ..++|+
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~ 849 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNIS 849 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccC
Confidence 3345789999999997666788889999999999999985443444433 678999999999865333222 347899
Q ss_pred EEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccc
Q 039650 318 ILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELS 376 (391)
Q Consensus 318 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 376 (391)
.|++++|.+. ..|.++..+. +|+.|++++|+....++.....+++|+.+++++|...
T Consensus 850 ~L~Ls~n~i~-~iP~si~~l~-~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 850 DLNLSRTGIE-EVPWWIEKFS-NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred EeECCCCCCc-cChHHHhcCC-CCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 9999999997 6777777666 9999999998766578888889999999999999643
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.3e-27 Score=199.71 Aligned_cols=364 Identities=31% Similarity=0.423 Sum_probs=272.5
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|.|++|.+. ....++.++..|.++.+.++.+. .+|.+++.+..++.++.+++.+. .+|+.+....+|.+++++++.+
T Consensus 50 lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 50 LILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNEL 126 (565)
T ss_pred hhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccce
Confidence 567777776 45566788999999999999886 68888999999999999999887 8888888899999999999988
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS 161 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (391)
. +++..+..+..++.++..+|++.. .|.++.++.++..+. ...+...+..+.... ++.|++++...|.+. .
T Consensus 127 ~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~-----~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 127 K-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLD-----LEGNKLKALPENHIA-MKRLKHLDCNSNLLE-T 197 (565)
T ss_pred e-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhh-----ccccchhhCCHHHHH-HHHHHhcccchhhhh-c
Confidence 8 788889999999999999998874 467777777777443 334666666555554 889999999888777 6
Q ss_pred CCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccC
Q 039650 162 IPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNL 241 (391)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (391)
+|+.++.+.+|..|+++.|.+. ..| .|.+|..|++++++.|++.-.-......++++..|++.+|.++ ..|..+.-+
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 7788989999999999999887 444 6888899999999998886333334457889999999999887 667777777
Q ss_pred CCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccc--------------------------------------c
Q 039650 242 RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSI--------------------------------------S 283 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------------------------------------~ 283 (391)
.+|..|++++|.++ ..+..++++ .|+.+-+.||.+.... .
T Consensus 275 rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 275 RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence 88999999999988 566677888 8888888888753100 0
Q ss_pred ccc---ccCCcccEEEcCCCccCchhhHhhhCCC--CccEEEcCCCcccchhHHHHHHh---------------------
Q 039650 284 LSY---ASLTSLTNLYLYENSLCDSIQKEIGDMK--SLSILDLSSNKLNGSILLSLANL--------------------- 337 (391)
Q Consensus 284 ~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~i~~~~~~~~~~~--------------------- 337 (391)
..+ ...-+.+.|++++-+++..+.++|.... -...+++++|++. +.|..+..+
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence 000 0123456677777777666666666433 2556677777654 344333222
Q ss_pred --hccccEEEcCCCcccCCCcccccCCccccEEEccccccccCCCccccc
Q 039650 338 --TNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGS 385 (391)
Q Consensus 338 --~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 385 (391)
.++|..|++++|.+. .+|..++....|+.|+++.|++. .+|.+.--
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~ 479 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE 479 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh
Confidence 237778888887777 67777777777888888888776 66665433
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-26 Score=212.32 Aligned_cols=371 Identities=30% Similarity=0.376 Sum_probs=235.2
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|++++|.+-....+...+...|++|++++|.+. .+|..+..+.+|+.|+++.|.+. ..|....++.+|+++++.++..
T Consensus 26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l 103 (1081)
T KOG0618|consen 26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL 103 (1081)
T ss_pred hhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh
Confidence 566667666555555666777999999999886 79999999999999999999887 7888888999999999999988
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhccccc--------------chhhhhceeeeccccccccccccccCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEF--------------LSDLIYNYLIYWINALSDLIPNEIGNLKS 147 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~--------------L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 147 (391)
. .+|..+..+.+|++|++++|.+... |..+..+.. +....++.+.+..+.....+......+..
T Consensus 104 ~-~lP~~~~~lknl~~LdlS~N~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 104 Q-SLPASISELKNLQYLDLSFNHFGPI-PLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred h-cCchhHHhhhcccccccchhccCCC-chhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe
Confidence 8 7899999999999999999987644 222222111 11112333333334444444444444333
Q ss_pred CCEEECCCCCCCCCCCCCcCCCC--------------------CccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCC
Q 039650 148 LSDLRLDYNTLSGSIPYSFGNLT--------------------KLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLS 207 (391)
Q Consensus 148 L~~L~l~~~~~~~~~~~~~~~~~--------------------~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 207 (391)
.+++.+|.+... .+..++ +++.|+...|.+.... .-....+++.++++.+.+.
T Consensus 182 --~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 182 --QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLS 254 (1081)
T ss_pred --eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceeeecchhhhh
Confidence 466666554411 112222 2333333333332100 0112245666666666665
Q ss_pred CCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccccccc-
Q 039650 208 GSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSY- 286 (391)
Q Consensus 208 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~- 286 (391)
..+.++..+.+|+.+....|.+. ..+..+....+|+.|.+..|.+. ..+....+...|++|++..|++.......+
T Consensus 255 -~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 255 -NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred -cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHh
Confidence 44466666667777776666664 44444455566666666666665 344455667778888887777653322111
Q ss_pred ------------------------ccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhcccc
Q 039650 287 ------------------------ASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLK 342 (391)
Q Consensus 287 ------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 342 (391)
..++.|+.|.+.+|.+++.....+.++..|+.|++++|++.......+..+. .|+
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle-~Le 410 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE-ELE 410 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH-HhH
Confidence 1234566677777777776667777777788888887777633333333333 777
Q ss_pred EEEcCCCcccCCCcccccCCccccEEEccccccccCCCccccccCCCc
Q 039650 343 VLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSLIQLE 390 (391)
Q Consensus 343 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 390 (391)
+|++++|+++ .++.++.+++.|++|...+|.+. ..| .+..+++|+
T Consensus 411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLK 455 (1081)
T ss_pred HHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence 7788887777 67777777777787777777777 666 555555554
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.4e-22 Score=200.23 Aligned_cols=334 Identities=24% Similarity=0.273 Sum_probs=246.3
Q ss_pred CCCCCCCCCCCccEEecCCcc------cccCChhhhhcCC-CCCEEEeeCCccCCCCcccccCCCCCceEEecccccccc
Q 039650 36 SIPPSLGNLTSLSYIGISNNL------LSGSIPNEVESLK-SLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGL 108 (391)
Q Consensus 36 ~~~~~~~~~~~L~~L~l~~~~------~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 108 (391)
..+.+|..+++|+.|.+.++. ....+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.++.+..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~- 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK- 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-
Confidence 455678899999999996643 2224566666654 5999999998877 667666 46899999999998874
Q ss_pred cchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCc
Q 039650 109 IPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPD 188 (391)
Q Consensus 109 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 188 (391)
.+.++..+++|+.+.+ ..+.....++ .++.+++|+.|++++|.....+|..+..+++|+.|++.+|......+.
T Consensus 626 L~~~~~~l~~Lk~L~L-----s~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDL-----RGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccccccCCCCCEEEC-----CCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 4666778888885544 3333333334 377889999999999876557788889999999999998764445554
Q ss_pred cccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccC-------ccCcc
Q 039650 189 EIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNG-------SIPLA 261 (391)
Q Consensus 189 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~ 261 (391)
.+ .+++|+.|++++|......+. ...+|+.|++.++.+. ..+..+ .+++|+.|.+.++.... ..+..
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhh
Confidence 44 788999999999865433332 2468999999998876 334333 56888888887753211 11112
Q ss_pred ccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccc
Q 039650 262 LGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSL 341 (391)
Q Consensus 262 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L 341 (391)
...+++|+.|++++|......+..+..+++|+.|++++|......+... .+++|+.|++++|......| ..+.+|
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p----~~~~nL 848 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP----DISTNI 848 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc----cccccc
Confidence 2345789999999997766677788899999999999986434344333 68999999999986443333 234589
Q ss_pred cEEEcCCCcccCCCcccccCCccccEEEccccccccCCCccccccCCCc
Q 039650 342 KVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSLIQLE 390 (391)
Q Consensus 342 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 390 (391)
+.|++++|.+. .+|..+..+++|+.|++++|+....+|..+..+++|+
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 99999999998 6888999999999999999977768887777776664
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=5.6e-25 Score=201.83 Aligned_cols=355 Identities=32% Similarity=0.339 Sum_probs=195.6
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|++++|++. ..+..+-.+++|+.|.++.|.+. ..|....++.+|+++.|.+|... .+|..+..+++|++|++++|.+
T Consensus 50 l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 50 LDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHF 126 (1081)
T ss_pred eeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhcc
Confidence 789999988 56667788899999999999887 56777889999999999999876 8899999999999999999987
Q ss_pred CCCCcccccCCCCCceEEeccc-------------------ccccccchhhcccccchhhhhceeeeccccccccccccc
Q 039650 82 KGSIPSSLGNLTNLVNLHLHIN-------------------ALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEI 142 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~-------------------~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 142 (391)
. ..|..+..+..++.+..++| .+.+..+.+...+.+ .+. +..+.+.......+
T Consensus 127 ~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ld-----Lr~N~~~~~dls~~ 198 (1081)
T KOG0618|consen 127 G-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLD-----LRYNEMEVLDLSNL 198 (1081)
T ss_pred C-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eee-----cccchhhhhhhhhc
Confidence 6 44544444444444443333 222222222222222 011 11111110000000
Q ss_pred -----------------cCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCC
Q 039650 143 -----------------GNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNT 205 (391)
Q Consensus 143 -----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 205 (391)
-.-++++.|..++|.++... ......++++++++.+.+. ..+.++..+.+|+.+....|.
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceeeecchhhhh-cchHHHHhcccceEecccchh
Confidence 01133344444444443111 1112345666666666665 334666666666666666655
Q ss_pred CCC----------------------CccccccCCCcccEEEccCcccccccchhhccC----------------------
Q 039650 206 LSG----------------------SIPLSLGNLTNLTTLYFSMNALSGSIPNEITNL---------------------- 241 (391)
Q Consensus 206 ~~~----------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------------------- 241 (391)
+.. ..+....+...|++|++..|.+.......+...
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 531 233334445666667666666543222222111
Q ss_pred ---CCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccE
Q 039650 242 ---RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSI 318 (391)
Q Consensus 242 ---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 318 (391)
+.|+.|.+.+|.+++.....+....+|+.|+++.|.+.......+.++..|+.|+++||.+.. .+..+..++.|++
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHT 434 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHH
Confidence 223344444444443333344445555555555555554444444555555555555555533 2244445555555
Q ss_pred EEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccc
Q 039650 319 LDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNE 374 (391)
Q Consensus 319 L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 374 (391)
|...+|++. ..| .+...+ .|+.+|++.|.+..........-|.|++|++++|.
T Consensus 435 L~ahsN~l~-~fP-e~~~l~-qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 435 LRAHSNQLL-SFP-ELAQLP-QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HhhcCCcee-ech-hhhhcC-cceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 555555553 233 333333 67788888777774433222223788888888875
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=1e-23 Score=176.17 Aligned_cols=340 Identities=23% Similarity=0.257 Sum_probs=199.0
Q ss_pred cccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeC-CccCCCCcccccCCCCCceEEe
Q 039650 22 SFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYN-NTLKGSIPSSLGNLTNLVNLHL 100 (391)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l 100 (391)
.-..+++..|.+..+++.+|+.+++||.||+++|.|+.+.|.+|..++.|..|.+.+ |+|+......|.++..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 444555666666656666666666666666666666656666666666655555544 5555444445566666666666
Q ss_pred cccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCC----------------------
Q 039650 101 HINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTL---------------------- 158 (391)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------------- 158 (391)
..+++.....+.|..++.+..|. +.++.+..+-...|..+.+++.+.+..+.+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLs-----lyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLS-----LYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhc-----ccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 66666555555555555555222 222333333223444455555554444331
Q ss_pred --------------CCCCCCCcCCCCCccEE--EcCCCc-CCCC-CCccccCCCcccEEEccCCCCCCCccccccCCCcc
Q 039650 159 --------------SGSIPYSFGNLTKLVTL--YLDTNA-LSGS-IPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNL 220 (391)
Q Consensus 159 --------------~~~~~~~~~~~~~L~~L--~l~~~~-~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 220 (391)
.++.+..|.. .++.+ .+.... .... ....|..+++|+.|++++|.++.....+|.+..++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 1111111110 11122 111112 1112 22357888999999999999988888888999999
Q ss_pred cEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccc-----cccccc---------
Q 039650 221 TTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSG-----SISLSY--------- 286 (391)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~--------- 286 (391)
++|.+..|.+.......|.++.+|+.|++.+|+++...+.+|.....|.++++-.|.+.- +...|+
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 999999998877777888889999999999999987788888888999999988876530 111111
Q ss_pred --ccCCcccEEEcCCCccCch---hhH------------------hhhC-------------CCCccEEEcCCCcccchh
Q 039650 287 --ASLTSLTNLYLYENSLCDS---IQK------------------EIGD-------------MKSLSILDLSSNKLNGSI 330 (391)
Q Consensus 287 --~~~~~L~~L~l~~~~~~~~---~~~------------------~~~~-------------~~~L~~L~l~~~~i~~~~ 330 (391)
...-.++.+.++...+.+. .++ .... +....++.+.+|.++ .+
T Consensus 381 ~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~v 459 (498)
T KOG4237|consen 381 RCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SV 459 (498)
T ss_pred CCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-cc
Confidence 1112344555544332110 000 0000 123446677777776 33
Q ss_pred HHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEcccc
Q 039650 331 LLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNN 373 (391)
Q Consensus 331 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 373 (391)
|.. ...++ .+++++|++....-..|.+++.|.++-+++|
T Consensus 460 p~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 460 PDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 333 22356 7888888888656667778888888877765
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=7.8e-22 Score=164.98 Aligned_cols=336 Identities=23% Similarity=0.229 Sum_probs=233.8
Q ss_pred CCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecc-cccccccchhhcccccchhhh
Q 039650 45 TSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHI-NALSGLIPDEIRNLEFLSDLI 123 (391)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~ 123 (391)
+.-..+++..|.|+...+.+|..+++|+.|++++|.|+-+.|.+|.+++.|..+.+.+ |+|++...+.|..+..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3466789999999977778899999999999999999988899999999998888766 999999999999999999664
Q ss_pred hceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCC------------CCCcccc
Q 039650 124 YNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSG------------SIPDEIR 191 (391)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~l~ 191 (391)
+ ..+.+.-+..++|..++++..|.+-.+.+..+....+..+..++.+.+..+.+.. .-+..++
T Consensus 147 l-----Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 147 L-----NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred c-----ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 4 4466677778889999999999998888775555577777778877776655210 0011111
Q ss_pred CCCcccEEEcc-------------------------CC-CCCCCccccccCCCcccEEEccCcccccccchhhccCCCCC
Q 039650 192 NLKSLFNLQLD-------------------------NN-TLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLS 245 (391)
Q Consensus 192 ~~~~L~~L~l~-------------------------~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 245 (391)
+........+. .+ .........|..+++|+++++++|.++.+...+|.+...++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 11111111111 11 11111223467789999999999999988888999999999
Q ss_pred EEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCc-----hhhHhh----------
Q 039650 246 DLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCD-----SIQKEI---------- 310 (391)
Q Consensus 246 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~---------- 310 (391)
+|.+..|.+.......|.++..|+.|++.+|+++...+..|....+|.+|++-+|++.- ...+++
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~ 381 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR 381 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence 99999998876667788889999999999999998888888888899999987775521 111221
Q ss_pred -hCCCCccEEEcCCCcccc---hhHHHH------------------HHhh------------ccccEEEcCCCcccCCCc
Q 039650 311 -GDMKSLSILDLSSNKLNG---SILLSL------------------ANLT------------NSLKVLYLSSNHIVGEIP 356 (391)
Q Consensus 311 -~~~~~L~~L~l~~~~i~~---~~~~~~------------------~~~~------------~~L~~L~l~~~~~~~~~~ 356 (391)
+.+-.++.+.++...+.+ ..++.. ..+. ..-.++.+.+|.++ .++
T Consensus 382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp 460 (498)
T KOG4237|consen 382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVP 460 (498)
T ss_pred CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccC
Confidence 122345566555544331 112111 0000 12345677777777 445
Q ss_pred ccccCCccccEEEccccccccCCCccccccCCC
Q 039650 357 LGHGKFSSLIQLILTNNELSGQLSPELGSLIQL 389 (391)
Q Consensus 357 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 389 (391)
.. .+.+| .+++++|+++..---.+.++.+|
T Consensus 461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql 490 (498)
T KOG4237|consen 461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMTQL 490 (498)
T ss_pred HH--HHhhh-hcccccCceehhhcccccchhhh
Confidence 44 56677 88999998874334456666554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=7e-18 Score=159.34 Aligned_cols=259 Identities=26% Similarity=0.279 Sum_probs=122.6
Q ss_pred CcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEe
Q 039650 21 SSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHL 100 (391)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 100 (391)
..-..|+++++.+. .+|+.+. ++|+.|++.+|.++ .+|. .+++|++|++++|.++ .+|.. .++|++|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 34556677776665 4555443 35677777766665 4443 2456666666666666 23322 245666666
Q ss_pred cccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCC
Q 039650 101 HINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTN 180 (391)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 180 (391)
.+|.+... +. -.++|+.|++++|.++. +|. ..++|+.|++++|
T Consensus 270 s~N~L~~L------------------------------p~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N 312 (788)
T PRK15387 270 FSNPLTHL------------------------------PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDN 312 (788)
T ss_pred cCCchhhh------------------------------hh---chhhcCEEECcCCcccc-ccc---cccccceeECCCC
Confidence 66554411 11 01346666777666652 332 2356677777766
Q ss_pred cCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCc
Q 039650 181 ALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPL 260 (391)
Q Consensus 181 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 260 (391)
.+... +.. ..+|+.|++++|.+. .++. ...+|+.|++++|.+.. .+. ..++|+.|++++|.+.. .+.
T Consensus 313 ~L~~L-p~l---p~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~-LP~---lp~~L~~L~Ls~N~L~~-LP~ 379 (788)
T PRK15387 313 QLASL-PAL---PSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA 379 (788)
T ss_pred ccccC-CCC---cccccccccccCccc-cccc---cccccceEecCCCccCC-CCC---CCcccceehhhcccccc-Ccc
Confidence 66532 221 234555666666554 2221 11345555555555542 121 12345555555555442 221
Q ss_pred cccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhcc
Q 039650 261 ALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNS 340 (391)
Q Consensus 261 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 340 (391)
. ..+|+.|++++|.+..... ..++|+.|++++|.+...+ . .+.+|+.|++++|+++ .+|..+..+. +
T Consensus 380 l---~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~LssIP-~---l~~~L~~L~Ls~NqLt-~LP~sl~~L~-~ 446 (788)
T PRK15387 380 L---PSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLP-M---LPSGLLSLSVYRNQLT-RLPESLIHLS-S 446 (788)
T ss_pred c---ccccceEEecCCcccCCCC----cccCCCEEEccCCcCCCCC-c---chhhhhhhhhccCccc-ccChHHhhcc-C
Confidence 1 1345555555554442111 1234444555555443211 1 1123444444444444 3344443333 4
Q ss_pred ccEEEcCCCcccC
Q 039650 341 LKVLYLSSNHIVG 353 (391)
Q Consensus 341 L~~L~l~~~~~~~ 353 (391)
|+.|++++|++.+
T Consensus 447 L~~LdLs~N~Ls~ 459 (788)
T PRK15387 447 ETTVNLEGNPLSE 459 (788)
T ss_pred CCeEECCCCCCCc
Confidence 4444444444443
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=3.7e-19 Score=156.93 Aligned_cols=283 Identities=25% Similarity=0.257 Sum_probs=139.6
Q ss_pred EEecCCccccc-CChhhhhcCCCCCEEEeeCCccCC----CCcccccCCCCCceEEecccccccccchhhcccccchhhh
Q 039650 49 YIGISNNLLSG-SIPNEVESLKSLSDLRLYNNTLKG----SIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLI 123 (391)
Q Consensus 49 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 123 (391)
.|++.++.+.+ .....+..+..|+.++++++.++. .++..+...+.+++++++++.+... +.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~------------ 68 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PR------------ 68 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-ch------------
Confidence 46676666652 344445667778888888887643 2344556677788888877655420 00
Q ss_pred hceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCC---CccEEEcCCCcCCCCC----CccccCC-Cc
Q 039650 124 YNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLT---KLVTLYLDTNALSGSI----PDEIRNL-KS 195 (391)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~----~~~l~~~-~~ 195 (391)
....++..+..+++|+.|+++++.+....+..+..+. +|++|++.+|.+.+.. ...+..+ ++
T Consensus 69 ----------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~ 138 (319)
T cd00116 69 ----------GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138 (319)
T ss_pred ----------HHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCC
Confidence 0112344566678888888888877643333333333 3777777777665211 1223334 55
Q ss_pred ccEEEccCCCCCCC----ccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEE
Q 039650 196 LFNLQLDNNTLSGS----IPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVL 271 (391)
Q Consensus 196 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 271 (391)
|+.|++++|.+... ....+..+++|++|++.+|.+....... ....+..+++|+++
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--------------------l~~~l~~~~~L~~L 198 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA--------------------LAEGLKANCNLEVL 198 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH--------------------HHHHHHhCCCCCEE
Confidence 66666666555421 1112223344444444444433211100 11112233445555
Q ss_pred EccCCccccc----cccccccCCcccEEEcCCCccCchhhHhhh-----CCCCccEEEcCCCcccchhHHHHHHhh---c
Q 039650 272 YLSINKLSGS----ISLSYASLTSLTNLYLYENSLCDSIQKEIG-----DMKSLSILDLSSNKLNGSILLSLANLT---N 339 (391)
Q Consensus 272 ~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~i~~~~~~~~~~~~---~ 339 (391)
++++|.+.+. ....+..+++|++|++++|.+.+.....+. ..+.|+.|++++|.+++.....+.... +
T Consensus 199 ~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~ 278 (319)
T cd00116 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE 278 (319)
T ss_pred eccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC
Confidence 5555444321 112233445555555555555432121111 124566666666665543333332221 2
Q ss_pred cccEEEcCCCcccCC----CcccccCC-ccccEEEccccc
Q 039650 340 SLKVLYLSSNHIVGE----IPLGHGKF-SSLIQLILTNNE 374 (391)
Q Consensus 340 ~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~ 374 (391)
+|+++++++|.+.+. ....+... +.|+.+++.+++
T Consensus 279 ~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 279 SLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 456666666666544 22222333 456666665554
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=6.5e-19 Score=155.40 Aligned_cols=280 Identities=27% Similarity=0.294 Sum_probs=173.1
Q ss_pred EEeecCCcCCC-CCCCCCCCCCCccEEecCCcccccC----ChhhhhcCCCCCEEEeeCCccCC------CCcccccCCC
Q 039650 25 GLSLYSNFLKG-SIPPSLGNLTSLSYIGISNNLLSGS----IPNEVESLKSLSDLRLYNNTLKG------SIPSSLGNLT 93 (391)
Q Consensus 25 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~ 93 (391)
.|++..+.+.+ .....+..+.+|++|+++++.+... ++..+...+.+++++++++.+.+ ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46677776653 4445566778899999999987432 44456677889999999887652 2234567788
Q ss_pred CCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC----CCCCcCCC
Q 039650 94 NLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS----IPYSFGNL 169 (391)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~ 169 (391)
+|++|+++++.+....+..+ ...... ++|+.|+++++.+.+. ....+..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~-------------------------~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~ 135 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVL-------------------------ESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDL 135 (319)
T ss_pred ceeEEEccCCCCChhHHHHH-------------------------HHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhC
Confidence 99999999887763222211 111223 6799999999987632 22234455
Q ss_pred -CCccEEEcCCCcCCCC----CCccccCCCcccEEEccCCCCCCCcc----ccccCCCcccEEEccCcccccccchhhcc
Q 039650 170 -TKLVTLYLDTNALSGS----IPDEIRNLKSLFNLQLDNNTLSGSIP----LSLGNLTNLTTLYFSMNALSGSIPNEITN 240 (391)
Q Consensus 170 -~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 240 (391)
++|+.+++.+|.+... ....+..+++|+.|++++|.+.+... ..+...++|+.|++++|.+.......
T Consensus 136 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~--- 212 (319)
T cd00116 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA--- 212 (319)
T ss_pred CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHH---
Confidence 8999999999998732 23345677899999999998763211 12233345666666555543211111
Q ss_pred CCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccc-----cCCcccEEEcCCCccCc----hhhHhhh
Q 039650 241 LRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYA-----SLTSLTNLYLYENSLCD----SIQKEIG 311 (391)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~----~~~~~~~ 311 (391)
....+..+++|++|++++|.+.+.....+. ..+.|++|++++|.+++ .....+.
T Consensus 213 -----------------l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 275 (319)
T cd00116 213 -----------------LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA 275 (319)
T ss_pred -----------------HHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh
Confidence 112233455566666666655432111111 23678888888887752 2223455
Q ss_pred CCCCccEEEcCCCcccchhHHHHHH----hhccccEEEcCCCc
Q 039650 312 DMKSLSILDLSSNKLNGSILLSLAN----LTNSLKVLYLSSNH 350 (391)
Q Consensus 312 ~~~~L~~L~l~~~~i~~~~~~~~~~----~~~~L~~L~l~~~~ 350 (391)
.+++|+.+++++|.+++.....+.. ..+.++++++.+++
T Consensus 276 ~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 276 EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 6678888888888888664443332 21367888877764
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=4e-17 Score=154.25 Aligned_cols=260 Identities=26% Similarity=0.389 Sum_probs=143.2
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|++++++++. ++..+. ++|+.|++.+|.++. +|. ..++|++|++++|.++ .+|.. .++|+.|++.+|.+
T Consensus 206 LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 206 LNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred EEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCch
Confidence 5566666663 333333 366777777776653 343 2366777777777665 44432 34666777776665
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS 161 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (391)
. .+|..+ ++|+.|++++|.+... +. ..++|+.|++++|.+..
T Consensus 275 ~-~Lp~lp---~~L~~L~Ls~N~Lt~L------------------------------P~---~p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 275 T-HLPALP---SGLCKLWIFGNQLTSL------------------------------PV---LPPGLQELSVSDNQLAS- 316 (788)
T ss_pred h-hhhhch---hhcCEEECcCCccccc------------------------------cc---cccccceeECCCCcccc-
Confidence 5 333322 3566666666655421 11 12456677777766653
Q ss_pred CCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccC
Q 039650 162 IPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNL 241 (391)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (391)
++.. ..+|+.|++.+|.+.. ++. ...+|+.|++++|.+. ..+. ..++|+.|++.+|.+.. .+. ..
T Consensus 317 Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls-~LP~---lp~~L~~L~Ls~N~L~~-LP~---l~ 381 (788)
T PRK15387 317 LPAL---PSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLTS-LPA---LP 381 (788)
T ss_pred CCCC---cccccccccccCcccc-ccc---cccccceEecCCCccC-CCCC---CCcccceehhhcccccc-Ccc---cc
Confidence 2221 2346666666666653 222 1245667777777665 2222 13456666666666552 222 12
Q ss_pred CCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEc
Q 039650 242 RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDL 321 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 321 (391)
++|+.|++++|.+.. .+.. .++|+.|++++|.+.... . .+.+|+.|++++|.+.. .+..+..+++|+.+++
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP-~---l~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLP-M---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCC-c---chhhhhhhhhccCcccc-cChHHhhccCCCeEEC
Confidence 456777777776653 2221 246677777777665322 1 12456667777777653 3445566677777777
Q ss_pred CCCcccchhHHHH
Q 039650 322 SSNKLNGSILLSL 334 (391)
Q Consensus 322 ~~~~i~~~~~~~~ 334 (391)
++|++++..+..+
T Consensus 453 s~N~Ls~~~~~~L 465 (788)
T PRK15387 453 EGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCchHHHHH
Confidence 7777766555544
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=1.1e-15 Score=145.29 Aligned_cols=118 Identities=27% Similarity=0.415 Sum_probs=50.1
Q ss_pred CCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEcc
Q 039650 147 SLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFS 226 (391)
Q Consensus 147 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 226 (391)
+|+.|++++|.+. .+|..+. ++|+.|++++|.+.. .+..+ .++|+.|++++|.+. ..+..+ .++|+.|++.
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls 333 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLT-ALPETL--PPGLKTLEAG 333 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccc-cCCccc--cccceecccc
Confidence 4555566555554 2333221 355555555555542 22211 124455555555444 122111 2345555555
Q ss_pred CcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccc
Q 039650 227 MNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLS 279 (391)
Q Consensus 227 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 279 (391)
+|.++. .+..+ +++|+.|++++|.+. ..+..+ .++|++|++++|.+.
T Consensus 334 ~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 334 ENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred CCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 554442 22221 134555555555443 222221 134455555555444
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=4.1e-15 Score=141.54 Aligned_cols=184 Identities=23% Similarity=0.384 Sum_probs=92.6
Q ss_pred CCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEcc
Q 039650 147 SLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFS 226 (391)
Q Consensus 147 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 226 (391)
+|+.|++++|.+. .+|..+. .+|+.|++++|.+. .++..+. ++|+.|++++|.+. ..+..+ .++|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL--PSGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc--hhhHHHHHhc
Confidence 4555666666555 3333332 35666666666655 2333222 35666666666555 222222 1356666666
Q ss_pred CcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchh
Q 039650 227 MNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSI 306 (391)
Q Consensus 227 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 306 (391)
+|.+.. .+..+ .++|+.|++++|.+.. .+..+ +++|+.|++++|.+.. .+..+ .++|+.|++++|.+...+
T Consensus 313 ~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 313 SNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLP 383 (754)
T ss_pred CCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCC
Confidence 665552 22211 2456666666666553 33222 2566666666666552 22222 246666666666665432
Q ss_pred hHhhhCCCCccEEEcCCCcccchhHHHHHHh---hccccEEEcCCCccc
Q 039650 307 QKEIGDMKSLSILDLSSNKLNGSILLSLANL---TNSLKVLYLSSNHIV 352 (391)
Q Consensus 307 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~---~~~L~~L~l~~~~~~ 352 (391)
.. +. .+|+.|++++|++. ..|..+..+ .+.+..|++.+|++.
T Consensus 384 ~~-l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 EN-LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred Hh-HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 22 21 34666666666665 333333322 125566666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.4e-16 Score=118.73 Aligned_cols=163 Identities=29% Similarity=0.483 Sum_probs=118.9
Q ss_pred hcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCce
Q 039650 18 GRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVN 97 (391)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 97 (391)
-++.+...|.++.|.++ ..|+.+..+.+|++|++.+|++. .+|..++.++.|++|+++-|++. .+|..|+.+|.|++
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34567777888888887 56667888899999999998887 78888888999999998888777 78888999999999
Q ss_pred EEecccccccc-cchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEE
Q 039650 98 LHLHINALSGL-IPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLY 176 (391)
Q Consensus 98 L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 176 (391)
||+.++.+... .|..|-.+..|+.+.+. ++...++|...+++++|+.|.+..+.+. .+|..++.+.+|++|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~------dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLG------DNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH 179 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhc------CCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence 99988877532 45555555556644443 2233456667777777777777777765 4566677777777777
Q ss_pred cCCCcCCCCCCcccc
Q 039650 177 LDTNALSGSIPDEIR 191 (391)
Q Consensus 177 l~~~~~~~~~~~~l~ 191 (391)
+.+|.++ ..|..++
T Consensus 180 iqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 180 IQGNRLT-VLPPELA 193 (264)
T ss_pred cccceee-ecChhhh
Confidence 7777776 4444333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3.1e-16 Score=116.95 Aligned_cols=157 Identities=34% Similarity=0.570 Sum_probs=131.2
Q ss_pred CCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccch
Q 039650 41 LGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLS 120 (391)
Q Consensus 41 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 120 (391)
+-.+.++..|.+++|.++ ..|..+..+.+|+.|++.+|.++ .+|..+..+++|++|+++-+++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-------------- 92 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-------------- 92 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--------------
Confidence 335677888899999887 67777888999999999999888 78889999999999998877664
Q ss_pred hhhhceeeeccccccccccccccCCCCCCEEECCCCCCC-CCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEE
Q 039650 121 DLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLS-GSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNL 199 (391)
Q Consensus 121 ~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 199 (391)
..|..|+.++.|+.||++++.+. ..+|..|..+..|+-|.+++|.+. ..|..++++.+|+.|
T Consensus 93 ----------------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 93 ----------------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQIL 155 (264)
T ss_pred ----------------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEE
Confidence 45777888999999999998774 457888888889999999999887 677778889999999
Q ss_pred EccCCCCCCCccccccCCCcccEEEccCcccc
Q 039650 200 QLDNNTLSGSIPLSLGNLTNLTTLYFSMNALS 231 (391)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 231 (391)
.+.+|.+. ..+..++.+..|++|.+.+|.++
T Consensus 156 ~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 156 SLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred eeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 99988876 66777788888888888888876
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.34 E-value=2.8e-13 Score=112.61 Aligned_cols=239 Identities=23% Similarity=0.250 Sum_probs=142.4
Q ss_pred cccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCC---CCCCCC-
Q 039650 88 SLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNT---LSGSIP- 163 (391)
Q Consensus 88 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~- 163 (391)
.+.....++++++++|.+....+.. +...+.+.+.|+..+++.-- ....+|
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~-------------------------i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e 79 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARA-------------------------IAKVLASKKELREVNLSDMFTGRLKDEIPE 79 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHH-------------------------HHHHHhhcccceeeehHhhhcCCcHHHHHH
Confidence 3455677888888888776433322 22333444455555554321 111111
Q ss_pred ------CCcCCCCCccEEEcCCCcCCCCCCc----cccCCCcccEEEccCCCCCCCccc-------------cccCCCcc
Q 039650 164 ------YSFGNLTKLVTLYLDTNALSGSIPD----EIRNLKSLFNLQLDNNTLSGSIPL-------------SLGNLTNL 220 (391)
Q Consensus 164 ------~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L 220 (391)
..+..+++|+.+++++|.+....+. .+..+.+|+.|.+.+|.+...... .....++|
T Consensus 80 ~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~L 159 (382)
T KOG1909|consen 80 ALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKL 159 (382)
T ss_pred HHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcce
Confidence 1233455677777776666543332 335566677777777665422111 22345778
Q ss_pred cEEEccCccccc----ccchhhccCCCCCEEEcCCCcccCc----cCccccCCCCccEEEccCCccccc----ccccccc
Q 039650 221 TTLYFSMNALSG----SIPNEITNLRSLSDLQLSENTLNGS----IPLALGNLTKLVVLYLSINKLSGS----ISLSYAS 288 (391)
Q Consensus 221 ~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~ 288 (391)
+.+...+|.+.. .....|+..+.|+.+.+..|.+... ....+..|++|+.|++..|.++.. ....++.
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s 239 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS 239 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc
Confidence 888888887653 3445666778888888888876522 223566788888888888877632 2334566
Q ss_pred CCcccEEEcCCCccCchhhHhh-----hCCCCccEEEcCCCcccchhHHHHHHh---hccccEEEcCCCcc
Q 039650 289 LTSLTNLYLYENSLCDSIQKEI-----GDMKSLSILDLSSNKLNGSILLSLANL---TNSLKVLYLSSNHI 351 (391)
Q Consensus 289 ~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~i~~~~~~~~~~~---~~~L~~L~l~~~~~ 351 (391)
+++|+.+++++|.+.......+ ...|+|+.+.+.+|.|+......+.-+ .|.|+.|++++|++
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7788888888887754332222 246788888888888774433333221 24778888888877
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=4.5e-13 Score=111.35 Aligned_cols=238 Identities=21% Similarity=0.227 Sum_probs=172.7
Q ss_pred ccccccCCCCCCEEECCCCCCCCC----CCCCcCCCCCccEEEcCCCcC---CCC-------CCccccCCCcccEEEccC
Q 039650 138 IPNEIGNLKSLSDLRLDYNTLSGS----IPYSFGNLTKLVTLYLDTNAL---SGS-------IPDEIRNLKSLFNLQLDN 203 (391)
Q Consensus 138 ~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~---~~~-------~~~~l~~~~~L~~L~l~~ 203 (391)
.......+..+++|++++|.+... +...+...++|+..++++--. ... ...++..+|.|+.+++++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 344556678999999999987633 333456677888887755311 111 123456778999999999
Q ss_pred CCCCCCccc----cccCCCcccEEEccCcccccccc-------------hhhccCCCCCEEEcCCCcccCcc----Cccc
Q 039650 204 NTLSGSIPL----SLGNLTNLTTLYFSMNALSGSIP-------------NEITNLRSLSDLQLSENTLNGSI----PLAL 262 (391)
Q Consensus 204 ~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~----~~~~ 262 (391)
|.+...... .+..+..|++|++.+|.+..... ...+..+.|+.+...+|++.... ...|
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 987644433 34467899999999997753222 22345578999999999875332 3456
Q ss_pred cCCCCccEEEccCCccccc----cccccccCCcccEEEcCCCccCc----hhhHhhhCCCCccEEEcCCCcccchhHHHH
Q 039650 263 GNLTKLVVLYLSINKLSGS----ISLSYASLTSLTNLYLYENSLCD----SIQKEIGDMKSLSILDLSSNKLNGSILLSL 334 (391)
Q Consensus 263 ~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 334 (391)
...+.|+.+.++.|.+... ....+..|++|+.|++..|-++. .....++.+++|+.+.+.+|-+.+.+...+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 6779999999999988632 23456789999999999998754 344667788999999999999887766555
Q ss_pred HH----hhccccEEEcCCCcccCC----CcccccCCccccEEEcccccc
Q 039650 335 AN----LTNSLKVLYLSSNHIVGE----IPLGHGKFSSLIQLILTNNEL 375 (391)
Q Consensus 335 ~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 375 (391)
.. ..|+|+.|.+.+|.++.. +..++...|.|++|++++|.+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 43 346899999999998865 345556689999999999988
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=2e-12 Score=125.41 Aligned_cols=83 Identities=27% Similarity=0.353 Sum_probs=38.2
Q ss_pred CCcccEEeecCCc--CCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCce
Q 039650 20 LSSFNGLSLYSNF--LKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVN 97 (391)
Q Consensus 20 ~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 97 (391)
+++|++|-+.++. +.....+.|..++.|++||+++|.--+.+|+.++.+.+|++|+++++.+. .+|..+.++.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3344444444442 22223333444455555555544333345555555555555555554444 44445555555555
Q ss_pred EEeccc
Q 039650 98 LHLHIN 103 (391)
Q Consensus 98 L~l~~~ 103 (391)
|++..+
T Consensus 623 Lnl~~~ 628 (889)
T KOG4658|consen 623 LNLEVT 628 (889)
T ss_pred eccccc
Confidence 554443
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.22 E-value=9e-12 Score=120.90 Aligned_cols=95 Identities=29% Similarity=0.334 Sum_probs=81.6
Q ss_pred cCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCccc
Q 039650 9 LSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSS 88 (391)
Q Consensus 9 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 88 (391)
+.......|..+|.|++||+++|.--+.+|+.++.+-+||+|+++++.+. .+|..+.+++.|.+|++..+......+..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence 44445566899999999999998655689999999999999999999988 89999999999999999988755455677
Q ss_pred ccCCCCCceEEecccc
Q 039650 89 LGNLTNLVNLHLHINA 104 (391)
Q Consensus 89 ~~~l~~L~~L~l~~~~ 104 (391)
...+.+|++|.+....
T Consensus 638 ~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhcccccEEEeeccc
Confidence 7779999999997765
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.2e-12 Score=108.15 Aligned_cols=211 Identities=24% Similarity=0.180 Sum_probs=110.9
Q ss_pred cCCCCCCEEECCCCCCCCCCC-CCcCCCCCccEEEcCCCcCCC--CCCccccCCCcccEEEccCCCCCCCccc-cccCCC
Q 039650 143 GNLKSLSDLRLDYNTLSGSIP-YSFGNLTKLVTLYLDTNALSG--SIPDEIRNLKSLFNLQLDNNTLSGSIPL-SLGNLT 218 (391)
Q Consensus 143 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 218 (391)
+++++|+.+.+.++....... .....+++++.|+++.|-+.. .+......+|+|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 455667777777666542211 345557777777777665542 1223345667777777777765421111 111346
Q ss_pred cccEEEccCcccccccc-hhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccc-ccccccCCcccEEE
Q 039650 219 NLTTLYFSMNALSGSIP-NEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSI-SLSYASLTSLTNLY 296 (391)
Q Consensus 219 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~L~ 296 (391)
+++.|.++.|.+..... .....+|+|+.|.+.+|...........-++.|+.|++++|.+.... ......+|.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 66777777666542222 22235667777777666322122223344566677777776655332 22335566677777
Q ss_pred cCCCccCchhhHh------hhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccC
Q 039650 297 LYENSLCDSIQKE------IGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVG 353 (391)
Q Consensus 297 l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~ 353 (391)
++.|.+....... ...+|+|+.|++..|+|.+.....-....++|+.|.+..+.+..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 7666654321111 23456666666666666533222222223356666666665554
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.2e-11 Score=105.90 Aligned_cols=211 Identities=26% Similarity=0.227 Sum_probs=148.4
Q ss_pred cCCCCCccEEEcCCCcCCCCCC-ccccCCCcccEEEccCCCCCCC--ccccccCCCcccEEEccCcccccccc-hhhccC
Q 039650 166 FGNLTKLVTLYLDTNALSGSIP-DEIRNLKSLFNLQLDNNTLSGS--IPLSLGNLTNLTTLYFSMNALSGSIP-NEITNL 241 (391)
Q Consensus 166 ~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 241 (391)
-.++.+|+...+.++.+..... .....+++++.|+++.|-+... ......++|+|+.|+++.|.+..-.. ..-..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3457788999999888764433 3567889999999998876533 23344578999999999987642111 111256
Q ss_pred CCCCEEEcCCCcccCc-cCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchh-hHhhhCCCCccEE
Q 039650 242 RSLSDLQLSENTLNGS-IPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSI-QKEIGDMKSLSIL 319 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 319 (391)
+.|+.|.++.|.++.. ....+..+|+|+.|.+..|..-.........+..|+.|+|++|.+.+.. ......+|.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7899999999988622 2334567899999999998532233444456778999999999875533 3456678899999
Q ss_pred EcCCCcccchhHHH-----HHHhhccccEEEcCCCcccCC-CcccccCCccccEEEccccccc
Q 039650 320 DLSSNKLNGSILLS-----LANLTNSLKVLYLSSNHIVGE-IPLGHGKFSSLIQLILTNNELS 376 (391)
Q Consensus 320 ~l~~~~i~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 376 (391)
.++.|++++..... ....+++|++|+++.|++.+. ....+...++|+.+.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 99999887533222 234456899999999998754 3456667788888888777665
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=6e-11 Score=92.43 Aligned_cols=108 Identities=28% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCCcccEEEccCcccccccchhhc-cCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccE
Q 039650 216 NLTNLTTLYFSMNALSGSIPNEIT-NLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTN 294 (391)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 294 (391)
++.++++|++.++.++.. +.++ .+.+|+.|++++|.+... ..+..++.|++|++++|.+..........+|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344566666666666532 2233 345666666666666532 23455666666666666665432211124566666
Q ss_pred EEcCCCccCc-hhhHhhhCCCCccEEEcCCCccc
Q 039650 295 LYLYENSLCD-SIQKEIGDMKSLSILDLSSNKLN 327 (391)
Q Consensus 295 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~ 327 (391)
|.+++|.+.+ .....+..+|+|+.|++.+|+++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666666543 12234455666666666666665
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=6e-12 Score=111.29 Aligned_cols=180 Identities=31% Similarity=0.413 Sum_probs=130.0
Q ss_pred CcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEc
Q 039650 194 KSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYL 273 (391)
Q Consensus 194 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 273 (391)
..-...+++.|++. ..+..+..+-.|+.+.++.|.+. ..+..+..+..|+.++++.|+++ ..+..+..+| |+.+.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33445666777665 55555666667777777777665 56667777788888888888876 4555555544 677888
Q ss_pred cCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccC
Q 039650 274 SINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVG 353 (391)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~ 353 (391)
++|+++ ..+..+...++|..++.+.|.+. ..+..+.++.+|+.+.+..|++. ..|+.+..+ .|.+||+++|++.
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L--pLi~lDfScNkis- 224 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL--PLIRLDFSCNKIS- 224 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--ceeeeecccCcee-
Confidence 888887 44444456778888888888874 45566778888888888888876 455666644 4888888888888
Q ss_pred CCcccccCCccccEEEccccccccCCCcccc
Q 039650 354 EIPLGHGKFSSLIQLILTNNELSGQLSPELG 384 (391)
Q Consensus 354 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 384 (391)
.+|.+|.+|+.|++|.+.+|++. ..|..++
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 78888888888888888888887 6665444
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=1.2e-10 Score=95.35 Aligned_cols=129 Identities=33% Similarity=0.307 Sum_probs=104.1
Q ss_pred CCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEc
Q 039650 242 RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDL 321 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 321 (391)
.-|++++++.|.++ .+...+.-.|.++.|+++.|.+.... .++.+++|+.|++++|.+.. ...+=..+-+++.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 45788999999887 56666777899999999999987544 36778999999999998854 3334446788999999
Q ss_pred CCCcccchhHHHHHHhhccccEEEcCCCcccCC-CcccccCCccccEEEcccccccc
Q 039650 322 SSNKLNGSILLSLANLTNSLKVLYLSSNHIVGE-IPLGHGKFSSLIQLILTNNELSG 377 (391)
Q Consensus 322 ~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~ 377 (391)
++|.| +....+...- +|..||+++|++... -...++++|.|+.+.+.+|++.+
T Consensus 360 a~N~i--E~LSGL~KLY-SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKI--ETLSGLRKLY-SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhH--hhhhhhHhhh-hheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99988 4466677776 899999999988744 35778999999999999999884
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=1.3e-09 Score=85.01 Aligned_cols=128 Identities=29% Similarity=0.269 Sum_probs=45.5
Q ss_pred cCCCCCEEEcCCCcccCccCcccc-CCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccE
Q 039650 240 NLRSLSDLQLSENTLNGSIPLALG-NLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSI 318 (391)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 318 (391)
.+.++++|+++++.+.. +. .++ .+.+|+.|++++|.+.... .+..+++|+.|++++|.+..........+|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 44567888888887763 22 233 4677888888888887543 4556788888888888886543322245788888
Q ss_pred EEcCCCcccchhH-HHHHHhhccccEEEcCCCcccCCC---cccccCCccccEEEccc
Q 039650 319 LDLSSNKLNGSIL-LSLANLTNSLKVLYLSSNHIVGEI---PLGHGKFSSLIQLILTN 372 (391)
Q Consensus 319 L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~ 372 (391)
|.+++|+|.+... ..+.. +++|+.|++.+|++...- ...+..+|+|+.||-..
T Consensus 93 L~L~~N~I~~l~~l~~L~~-l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSS-LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EE-TTS---SCCCCGGGGG--TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EECcCCcCCChHHhHHHHc-CCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 8888888765332 33333 347888888888877441 22345678888776554
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.89 E-value=4.2e-09 Score=100.28 Aligned_cols=94 Identities=40% Similarity=0.603 Sum_probs=80.7
Q ss_pred cccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEec
Q 039650 22 SFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLH 101 (391)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 101 (391)
.++.|+++++.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47888888888888888888888999999999888888888888888899999999998888888888888999999999
Q ss_pred ccccccccchhhcc
Q 039650 102 INALSGLIPDEIRN 115 (391)
Q Consensus 102 ~~~~~~~~~~~~~~ 115 (391)
+|.+.+..|..+..
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 88888777777654
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=9.7e-10 Score=90.10 Aligned_cols=183 Identities=22% Similarity=0.249 Sum_probs=83.0
Q ss_pred ccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCC---CCc--------------------cccCCC
Q 039650 138 IPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGS---IPD--------------------EIRNLK 194 (391)
Q Consensus 138 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~--------------------~l~~~~ 194 (391)
++..+.-+++|+.+.++.+.-..+. .....-|.|+.+.+.+..+... .|. .+.-+.
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred cccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 4444555677888888777544222 1222346677776666544321 010 011223
Q ss_pred cccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEcc
Q 039650 195 SLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLS 274 (391)
Q Consensus 195 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 274 (391)
.|+.++++.|.+. .+.....-.|+++.|+++.|.+.... .++.+++|+.|++++|.++ ....+-..+.++++|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4445555555444 23333334455555555555443221 2444555555555555443 222222344455555555
Q ss_pred CCccccccccccccCCcccEEEcCCCccCch-hhHhhhCCCCccEEEcCCCccc
Q 039650 275 INKLSGSISLSYASLTSLTNLYLYENSLCDS-IQKEIGDMKSLSILDLSSNKLN 327 (391)
Q Consensus 275 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~ 327 (391)
+|.+... ..+.++=+|.+|++.+|++... ....++++|-|+.+.+.+|.+.
T Consensus 361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5544421 1223333455555555554321 1123444555555555555443
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2.5e-09 Score=68.48 Aligned_cols=60 Identities=33% Similarity=0.436 Sum_probs=40.0
Q ss_pred CcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 21 SSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
|+|++|++++|.+....+++|..+++|++|++++|.+....+..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 466777777776665556667777777777777776665555566666777777766664
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.2e-11 Score=98.39 Aligned_cols=193 Identities=21% Similarity=0.190 Sum_probs=94.1
Q ss_pred CCCEEECCCCCCCCC-CCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCC-CCC-ccccccCCCcccEE
Q 039650 147 SLSDLRLDYNTLSGS-IPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTL-SGS-IPLSLGNLTNLTTL 223 (391)
Q Consensus 147 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~-~~~~~~~~~~L~~L 223 (391)
.++.+|++...++.. ....+..|.+|+.+.+.+..+.+.+...++.-..|+.++++.+.- +.. ..-.+..+..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666665554411 112234456666666666666655555566666666666665432 211 11123455666666
Q ss_pred EccCcccccccchhh-ccC-CCCCEEEcCCCccc--C-ccCccccCCCCccEEEccCCc-cccccccccccCCcccEEEc
Q 039650 224 YFSMNALSGSIPNEI-TNL-RSLSDLQLSENTLN--G-SIPLALGNLTKLVVLYLSINK-LSGSISLSYASLTSLTNLYL 297 (391)
Q Consensus 224 ~l~~~~~~~~~~~~~-~~~-~~L~~L~l~~~~~~--~-~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l 297 (391)
+++.|........+. .+. ++|+.|+++++.-. . ........||+|.+|+++.+. ++......+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 666664432211111 111 45666666665322 0 011122356666666666653 33323334455666666666
Q ss_pred CCCccC-chhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhcc
Q 039650 298 YENSLC-DSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNS 340 (391)
Q Consensus 298 ~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 340 (391)
++|... ....-.+...|+|..|++.++ +++...+.+...+++
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~-vsdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC-VSDTTMELLKEMLSH 388 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc-cCchHHHHHHHhCcc
Confidence 666531 122223445666666666665 233344444444433
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.83 E-value=5.1e-10 Score=99.33 Aligned_cols=174 Identities=34% Similarity=0.552 Sum_probs=137.4
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
.|++.|++. ..+..+..+..|+.+.++.|.+. ..|..+..+..|.+++++.|++. .+|..++.++ |+.|.+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 577888888 55666677889999999998886 78888999999999999999987 8888888765 89999999999
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS 161 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (391)
+ .+|..+...++|..++.+.|.+... +.-++.+.+|+.+.++. +..... +..+. .-.|..||++.|.+. .
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrR-----n~l~~l-p~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRR-----NHLEDL-PEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhh-----hhhhhC-CHHHh-CCceeeeecccCcee-e
Confidence 9 7788888889999999999988744 55667777777665442 444443 44444 346788999998887 6
Q ss_pred CCCCcCCCCCccEEEcCCCcCCCCCCccc
Q 039650 162 IPYSFGNLTKLVTLYLDTNALSGSIPDEI 190 (391)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 190 (391)
+|-.|.++.+|+.|-|.+|.+. ..+..+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 7778989999999999999887 344333
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=7.1e-09 Score=94.21 Aligned_cols=193 Identities=39% Similarity=0.532 Sum_probs=107.7
Q ss_pred EEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCC-CCCEEEeeCCccCCCCcccccCCCCCceEEeccc
Q 039650 25 GLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLK-SLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHIN 103 (391)
Q Consensus 25 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 103 (391)
.++...+.+. .....+...+.+..|++.++.+. .++....... +|+.|+++++.+. .++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4566665542 12333444567777777777766 5555555553 7777777777776 45556777777777777777
Q ss_pred ccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCC
Q 039650 104 ALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALS 183 (391)
Q Consensus 104 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 183 (391)
++....+ ..+..+.|+.|+++++.+. .++........|+++.+.+|...
T Consensus 174 ~l~~l~~------------------------------~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 174 DLSDLPK------------------------------LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII 222 (394)
T ss_pred hhhhhhh------------------------------hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce
Confidence 7663311 1113455666666666555 33333333444666666665322
Q ss_pred CCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCccc
Q 039650 184 GSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLN 255 (391)
Q Consensus 184 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 255 (391)
.....+.....+..+.+.++++.. .+..+..++.++.+++.+|.+..... +....+++.|+++++.+.
T Consensus 223 -~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 223 -ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred -ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 222334455555555555555442 23344555566666666666553322 555566666666666554
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=1.4e-08 Score=92.18 Aligned_cols=132 Identities=42% Similarity=0.562 Sum_probs=60.6
Q ss_pred ccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCccc
Q 039650 142 IGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLT 221 (391)
Q Consensus 142 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 221 (391)
+..++.|+.|++++|.+.. .+......+.|+.|++.++.+.. .+........|+.+.+++|... .....+....++.
T Consensus 159 ~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~ 235 (394)
T COG4886 159 LRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLS 235 (394)
T ss_pred hhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhccccc
Confidence 3445555556665555552 22222244555555555555542 2222223334555555555322 2223344444455
Q ss_pred EEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccc
Q 039650 222 TLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLS 279 (391)
Q Consensus 222 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 279 (391)
.+.+.++.+. ..+..++.++.++.|+++++.+..... +....+++.++++++.+.
T Consensus 236 ~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 236 GLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 5554444433 113344444555555555555542222 444555555555555443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=1e-08 Score=65.61 Aligned_cols=59 Identities=34% Similarity=0.385 Sum_probs=27.8
Q ss_pred CccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCc
Q 039650 267 KLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNK 325 (391)
Q Consensus 267 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 325 (391)
+|+++++++|.+.......|..+++|+.|++++|.+....+..|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444444444444444444444444444444444444445544444443
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.3e-10 Score=91.98 Aligned_cols=179 Identities=24% Similarity=0.157 Sum_probs=117.6
Q ss_pred cccEEEccCCCCCCCc-cccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcc-cCc-cCccccCCCCccEE
Q 039650 195 SLFNLQLDNNTLSGSI-PLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTL-NGS-IPLALGNLTKLVVL 271 (391)
Q Consensus 195 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~-~~~~~~~~~~L~~l 271 (391)
.++.+|++...++... -..+.++.+|+.+.+.++.+.+.....++...+|+.|+++.|.- +.. ..-.+..|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5778888877665332 23455678888888888887766667777888888888887742 211 12235678888888
Q ss_pred EccCCccccccccc-c-ccCCcccEEEcCCCcc--Cch-hhHhhhCCCCccEEEcCCC-cccchhHHHHHHhhccccEEE
Q 039650 272 YLSINKLSGSISLS-Y-ASLTSLTNLYLYENSL--CDS-IQKEIGDMKSLSILDLSSN-KLNGSILLSLANLTNSLKVLY 345 (391)
Q Consensus 272 ~l~~~~~~~~~~~~-~-~~~~~L~~L~l~~~~~--~~~-~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~ 345 (391)
+++-|......... + .--++|+.|+++|+.- ... .......+|+|..|+++.| .+++.....+.++. .|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-YLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc-hheeee
Confidence 88888665322111 1 1236788888888752 222 2223347899999999876 46554445555554 889999
Q ss_pred cCCCcccC-CCcccccCCccccEEEccccc
Q 039650 346 LSSNHIVG-EIPLGHGKFSSLIQLILTNNE 374 (391)
Q Consensus 346 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 374 (391)
++.|.... .....+...|+|.+|++-+|-
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 99886442 233455788999999988873
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.69 E-value=4.2e-08 Score=93.52 Aligned_cols=113 Identities=33% Similarity=0.412 Sum_probs=89.3
Q ss_pred CccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEc
Q 039650 267 KLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYL 346 (391)
Q Consensus 267 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l 346 (391)
.++.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..|..+..+. +|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~-~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC-CCCEEEC
Confidence 477788888888777777778888888888888888766777788888888888888888888888887766 8888888
Q ss_pred CCCcccCCCcccccC-CccccEEEccccccccCCC
Q 039650 347 SSNHIVGEIPLGHGK-FSSLIQLILTNNELSGQLS 380 (391)
Q Consensus 347 ~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~ 380 (391)
++|++.+.+|..+.. ..++..+++.+|...+..|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 888888888877764 3566788888886554443
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=1e-09 Score=93.87 Aligned_cols=156 Identities=24% Similarity=0.176 Sum_probs=89.8
Q ss_pred CCCcccEEEccCCCC-CCCccccc-cCCCcccEEEccCcc-cccccchhhc-cCCCCCEEEcCCCccc--CccCccccCC
Q 039650 192 NLKSLFNLQLDNNTL-SGSIPLSL-GNLTNLTTLYFSMNA-LSGSIPNEIT-NLRSLSDLQLSENTLN--GSIPLALGNL 265 (391)
Q Consensus 192 ~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~~~ 265 (391)
.+..|+.++.+++.. .+.....+ .+.++|+.+.+..+. ++......++ .++.|+.+++..+... +.....-.+|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 345566666665532 22222222 245677777777764 3323333333 4577888888777543 1122233467
Q ss_pred CCccEEEccCCcccccc-----ccccccCCcccEEEcCCCcc-CchhhHhhhCCCCccEEEcCCCc-ccchhHHHHHHhh
Q 039650 266 TKLVVLYLSINKLSGSI-----SLSYASLTSLTNLYLYENSL-CDSIQKEIGDMKSLSILDLSSNK-LNGSILLSLANLT 338 (391)
Q Consensus 266 ~~L~~l~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~ 338 (391)
+.|+++.++++...... ...-.....++.+.+++++. ++.....+..+++|+++++-+++ ++.+....+....
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 88888888877543221 22234566788888888874 44556677788888888887764 4445555555555
Q ss_pred ccccEEEcC
Q 039650 339 NSLKVLYLS 347 (391)
Q Consensus 339 ~~L~~L~l~ 347 (391)
|+++...+-
T Consensus 452 p~i~v~a~~ 460 (483)
T KOG4341|consen 452 PNIKVHAYF 460 (483)
T ss_pred ccceehhhc
Confidence 566554443
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=2.8e-08 Score=81.60 Aligned_cols=181 Identities=20% Similarity=0.185 Sum_probs=112.3
Q ss_pred cccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCC-CccccCCCcccEEEccCCCCCC--Ccccccc-C
Q 039650 141 EIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSI-PDEIRNLKSLFNLQLDNNTLSG--SIPLSLG-N 216 (391)
Q Consensus 141 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~-~ 216 (391)
.+.++|+|+.|+++.|.+...+...-....+|+.+-+.++.+.... ...+..+|.++.++++.|.+.. ....... .
T Consensus 92 ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~ 171 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW 171 (418)
T ss_pred HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc
Confidence 3456778888888877765333222134567778877777665332 2345667778888888774321 1111122 2
Q ss_pred CCcccEEEccCccccc--ccchhhccCCCCCEEEcCCCcccCc-cCccccCCCCccEEEccCCccccccc-cccccCCcc
Q 039650 217 LTNLTTLYFSMNALSG--SIPNEITNLRSLSDLQLSENTLNGS-IPLALGNLTKLVVLYLSINKLSGSIS-LSYASLTSL 292 (391)
Q Consensus 217 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L 292 (391)
.+.++++....|.... .....-..+|++..+.+..|.+... .......+|.+-.|+++.+++.++.. ..+.+++.|
T Consensus 172 s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l 251 (418)
T KOG2982|consen 172 STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQL 251 (418)
T ss_pred chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchh
Confidence 3467777776664321 1122224568888888888866422 34456677888899999999886643 456789999
Q ss_pred cEEEcCCCccCchhhH------hhhCCCCccEEEc
Q 039650 293 TNLYLYENSLCDSIQK------EIGDMKSLSILDL 321 (391)
Q Consensus 293 ~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l 321 (391)
..|.+..+++.+.... .++.+++++.|+=
T Consensus 252 ~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 252 VDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred heeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 9999999988653332 2345667666643
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=3.3e-08 Score=81.16 Aligned_cols=199 Identities=23% Similarity=0.229 Sum_probs=103.2
Q ss_pred CCCccEEEcCCCcCCC--CCCccccCCCcccEEEccCCCCCCCccccc-cCCCcccEEEccCccccc-ccchhhccCCCC
Q 039650 169 LTKLVTLYLDTNALSG--SIPDEIRNLKSLFNLQLDNNTLSGSIPLSL-GNLTNLTTLYFSMNALSG-SIPNEITNLRSL 244 (391)
Q Consensus 169 ~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L 244 (391)
+..++++++.+|.+.+ .+...+..+|.|+.|+++.|++... ...+ ....+|+.+.+.+..+.- .....+...|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4566777777776653 1223345667777777777766522 2222 244566677666654431 122233445666
Q ss_pred CEEEcCCCcccC--ccCccccCC-CCccEEEccCCccccc--cccccccCCcccEEEcCCCccCc-hhhHhhhCCCCccE
Q 039650 245 SDLQLSENTLNG--SIPLALGNL-TKLVVLYLSINKLSGS--ISLSYASLTSLTNLYLYENSLCD-SIQKEIGDMKSLSI 318 (391)
Q Consensus 245 ~~L~l~~~~~~~--~~~~~~~~~-~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~ 318 (391)
+.|.++.|.+.. ......... +.+++++...|....+ ......-+|++..+.+..|++.. .....+..+|.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 666666663321 111111222 2455555555543211 11111235677777777776633 23344555666667
Q ss_pred EEcCCCcccchhH-HHHHHhhccccEEEcCCCcccCCCccc------ccCCccccEEE
Q 039650 319 LDLSSNKLNGSIL-LSLANLTNSLKVLYLSSNHIVGEIPLG------HGKFSSLIQLI 369 (391)
Q Consensus 319 L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~------~~~~~~L~~L~ 369 (391)
|.+..++|.+... ..+..++ .|.-|.++++++.+.+... ++++++++.|+
T Consensus 229 LnL~~~~idswasvD~Ln~f~-~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFP-QLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhcccccccHHHHHHHcCCc-hhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 7777777765432 3333333 7777777777777554322 23455555554
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=3.5e-08 Score=89.84 Aligned_cols=62 Identities=39% Similarity=0.580 Sum_probs=31.8
Q ss_pred CCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccccc
Q 039650 43 NLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALS 106 (391)
Q Consensus 43 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 106 (391)
.+..++.+.+..+.+. .....+..+++|+.+++.++.+.. +...+..+++|+++++++|.|.
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~ 131 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT 131 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc
Confidence 3444555555555443 222224455566666666665552 2222555566666666666655
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=6.3e-07 Score=72.86 Aligned_cols=233 Identities=18% Similarity=0.153 Sum_probs=147.7
Q ss_pred CCCCCCEEECCCCCCCCCCCC----CcCCCCCccEEEcCCCcCC---CC-------CCccccCCCcccEEEccCCCCCCC
Q 039650 144 NLKSLSDLRLDYNTLSGSIPY----SFGNLTKLVTLYLDTNALS---GS-------IPDEIRNLKSLFNLQLDNNTLSGS 209 (391)
Q Consensus 144 ~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~---~~-------~~~~l~~~~~L~~L~l~~~~~~~~ 209 (391)
-+..+..+++++|.+...... .+++-.+|+..+++.--.. +. ....+.+||+++.+++++|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 367889999999988644433 3444566777766543211 11 123456788999999998877655
Q ss_pred ccc----cccCCCcccEEEccCcccccccch-------------hhccCCCCCEEEcCCCcccCccC----ccccCCCCc
Q 039650 210 IPL----SLGNLTNLTTLYFSMNALSGSIPN-------------EITNLRSLSDLQLSENTLNGSIP----LALGNLTKL 268 (391)
Q Consensus 210 ~~~----~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L 268 (391)
++. .++....|++|.+.+|.+....-. ....-|.|+.+...+|++..... ..+..-..|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 443 345567888888888876432111 11234778888888887652221 122333578
Q ss_pred cEEEccCCcccccc-----ccccccCCcccEEEcCCCccCc----hhhHhhhCCCCccEEEcCCCcccchhHHHHHHh--
Q 039650 269 VVLYLSINKLSGSI-----SLSYASLTSLTNLYLYENSLCD----SIQKEIGDMKSLSILDLSSNKLNGSILLSLANL-- 337 (391)
Q Consensus 269 ~~l~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~-- 337 (391)
+++.+..|.+.... ...+..+.+|+.|++..|-++. .....++.++.|+.|.+..|-++..+...+...
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 88888888776321 1223456788888888887643 344556667778888888887776665544332
Q ss_pred ---hccccEEEcCCCcccCCCcc-----cc--cCCccccEEEccccccc
Q 039650 338 ---TNSLKVLYLSSNHIVGEIPL-----GH--GKFSSLIQLILTNNELS 376 (391)
Q Consensus 338 ---~~~L~~L~l~~~~~~~~~~~-----~~--~~~~~L~~L~l~~~~~~ 376 (391)
.|+|..|...+|.+...+.. .+ .++|.|..+.+.+|++.
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 35788888888865544221 12 46788888888888775
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=1.2e-08 Score=93.53 Aligned_cols=183 Identities=31% Similarity=0.343 Sum_probs=116.2
Q ss_pred cccccCCCCCceEEecccccccccchhhcccc-cchhhhhceeeecccccccccccc---ccC---CCCCCEEECCCCCC
Q 039650 86 PSSLGNLTNLVNLHLHINALSGLIPDEIRNLE-FLSDLIYNYLIYWINALSDLIPNE---IGN---LKSLSDLRLDYNTL 158 (391)
Q Consensus 86 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~---~~~---~~~L~~L~l~~~~~ 158 (391)
|..+..+.+|++|.+++|.+.. ..++..+. .|++|.... .-......+... +.+ .-+|...++++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~---Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN---SLDALRHVFASCGGDISNSPVWNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc---cHHHHHHHHHHhccccccchhhhhHhhhhcchhhH
Confidence 5667778899999999988764 22222222 133332110 000000011111 111 13567777888877
Q ss_pred CCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhh
Q 039650 159 SGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEI 238 (391)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 238 (391)
. .....+.-++.++.|+++.|.+.++ ..+..+++|+.||++.|.+. ..+..-....+|..|.+.+|.++. ...+
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t--L~gi 250 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT--LRGI 250 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh--hhhH
Confidence 6 5556777788999999999998754 36888999999999999886 333322234569999999988763 3455
Q ss_pred ccCCCCCEEEcCCCcccCc-cCccccCCCCccEEEccCCccc
Q 039650 239 TNLRSLSDLQLSENTLNGS-IPLALGNLTKLVVLYLSINKLS 279 (391)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~ 279 (391)
..+.+|+.||+++|-+.+. ....+..+..|+.|.+.||.+.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6778899999999877532 1223455677888888888764
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.22 E-value=2.1e-07 Score=84.79 Aligned_cols=224 Identities=29% Similarity=0.362 Sum_probs=128.2
Q ss_pred ccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCccc
Q 039650 142 IGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLT 221 (391)
Q Consensus 142 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 221 (391)
+..+++++.+++.++.+... ...+..+++|+.|++++|.+.+. ..+..++.|+.|++.+|.+... ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhh
Confidence 45567777777777776633 22266677788888887777643 2345556677777777777532 2344467777
Q ss_pred EEEccCcccccccc-hhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCC
Q 039650 222 TLYFSMNALSGSIP-NEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYEN 300 (391)
Q Consensus 222 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 300 (391)
.+++++|.+..... . ...+..++.+.+.++.+... ..+..+..+..+++..|.+............+|+.+.++++
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGN 242 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccC
Confidence 77777777653333 1 35666777777777766421 22334444444466666665332222111113777777777
Q ss_pred ccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCC--Cccc--ccCCccccEEEccccccc
Q 039650 301 SLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGE--IPLG--HGKFSSLIQLILTNNELS 376 (391)
Q Consensus 301 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~ 376 (391)
++.... ..+..++.+..+++..+.+... ..+.... .+..+....+.+... .... ....+.+..+.+..+++.
T Consensus 243 ~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 243 RISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLP-KLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred cccccc-ccccccccccccchhhcccccc--ccccccc-hHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence 774432 4455667777777777776532 2222222 455555555554422 1111 345667777777777665
Q ss_pred c
Q 039650 377 G 377 (391)
Q Consensus 377 ~ 377 (391)
.
T Consensus 319 ~ 319 (414)
T KOG0531|consen 319 K 319 (414)
T ss_pred c
Confidence 4
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=1.4e-07 Score=86.66 Aligned_cols=179 Identities=32% Similarity=0.320 Sum_probs=97.6
Q ss_pred CCCcCCCCCccEEEcCCCcCCCCCCccccCC-CcccEEEccCCCCCCCccc-------cc---cCCCcccEEEccCcccc
Q 039650 163 PYSFGNLTKLVTLYLDTNALSGSIPDEIRNL-KSLFNLQLDNNTLSGSIPL-------SL---GNLTNLTTLYFSMNALS 231 (391)
Q Consensus 163 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~-------~~---~~~~~L~~L~l~~~~~~ 231 (391)
|-.+..+..|+.|.++++.+.. ...+..+ ..|+.|...+ ... .... .+ ..+.+|...+++.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLD-ALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHH-HHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 5567778999999999998753 2222221 1222222111 010 0000 01 11235666666666655
Q ss_pred cccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhh
Q 039650 232 GSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIG 311 (391)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 311 (391)
.+...+.-++.++.|+++.|.+... ..+..|++|++|+++.|.+....-....+|. |+.|++++|.++. .-.+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hhhHH
Confidence 5556666666777777777766532 2556677777777777766643333333443 7777777776633 23345
Q ss_pred CCCCccEEEcCCCcccchhH-HHHHHhhccccEEEcCCCccc
Q 039650 312 DMKSLSILDLSSNKLNGSIL-LSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 312 ~~~~L~~L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~~~~~ 352 (391)
++.+|+.|++++|-+.+..- ..++.+. .|+.|.+.||++-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCccc
Confidence 66667777777766554332 2223333 6666777776654
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=1.7e-06 Score=70.48 Aligned_cols=212 Identities=21% Similarity=0.183 Sum_probs=145.0
Q ss_pred cCCCCCccEEEcCCCcCCCC----CCccccCCCcccEEEccCCCCC---CC-------ccccccCCCcccEEEccCcccc
Q 039650 166 FGNLTKLVTLYLDTNALSGS----IPDEIRNLKSLFNLQLDNNTLS---GS-------IPLSLGNLTNLTTLYFSMNALS 231 (391)
Q Consensus 166 ~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~---~~-------~~~~~~~~~~L~~L~l~~~~~~ 231 (391)
+..+..+.++++++|.+... .+..++.-.+|+..++++--.. +. ....+..||+++.+++++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 33467889999999988633 2334556678888887764221 11 2334567899999999999876
Q ss_pred cccch----hhccCCCCCEEEcCCCcccCccCc-------------cccCCCCccEEEccCCcccccc----ccccccCC
Q 039650 232 GSIPN----EITNLRSLSDLQLSENTLNGSIPL-------------ALGNLTKLVVLYLSINKLSGSI----SLSYASLT 290 (391)
Q Consensus 232 ~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~ 290 (391)
...+. .+++.+.|++|.+++|.+...-.. -...-|.|+++.+..|.+.... ...+....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 55554 345668999999999977522111 1234588999999999876322 22233345
Q ss_pred cccEEEcCCCccCch-----hhHhhhCCCCccEEEcCCCcccchhHHHHHHhhc---cccEEEcCCCcccCCCcccc---
Q 039650 291 SLTNLYLYENSLCDS-----IQKEIGDMKSLSILDLSSNKLNGSILLSLANLTN---SLKVLYLSSNHIVGEIPLGH--- 359 (391)
Q Consensus 291 ~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~~~--- 359 (391)
.|+.+.+..|.|... ....+.++.+|+.|+++.|.++-.+...+....+ .|++|.+..|-+.......+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 788999999987543 2234557899999999999988666655544332 57899999997775544332
Q ss_pred ---cCCccccEEEcccccccc
Q 039650 360 ---GKFSSLIQLILTNNELSG 377 (391)
Q Consensus 360 ---~~~~~L~~L~l~~~~~~~ 377 (391)
...|+|..|-..+|.+.+
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhhcCCCccccccchhhhcC
Confidence 246899999999987654
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=2.7e-06 Score=81.27 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=34.8
Q ss_pred CCcccEEeecCCcCC-CCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCC-CCcccccCCCCCce
Q 039650 20 LSSFNGLSLYSNFLK-GSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKG-SIPSSLGNLTNLVN 97 (391)
Q Consensus 20 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~ 97 (391)
+|.|++|.+++-.+. +.+.....++|+|+.||++++.+. .+ ..++++++|++|.+.+-.+.. .....+..+++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555544332 122222334455555555554443 12 334445555555444433331 11223344455555
Q ss_pred EEeccc
Q 039650 98 LHLHIN 103 (391)
Q Consensus 98 L~l~~~ 103 (391)
||++..
T Consensus 225 LDIS~~ 230 (699)
T KOG3665|consen 225 LDISRD 230 (699)
T ss_pred eecccc
Confidence 555443
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.97 E-value=6.6e-08 Score=83.06 Aligned_cols=247 Identities=17% Similarity=0.063 Sum_probs=135.4
Q ss_pred CCCCCCEEECCCC-CCCCCCCC-CcCCCCCccEEEcCCCcCC-C-CCCccccCCCcccEEEccCCCCC-CCc-cccccCC
Q 039650 144 NLKSLSDLRLDYN-TLSGSIPY-SFGNLTKLVTLYLDTNALS-G-SIPDEIRNLKSLFNLQLDNNTLS-GSI-PLSLGNL 217 (391)
Q Consensus 144 ~~~~L~~L~l~~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~-~-~~~~~l~~~~~L~~L~l~~~~~~-~~~-~~~~~~~ 217 (391)
.+++++.|++..| .+++.... ....+++|+++++++|.-. + .+.....++..++.+...+|.-. ... ...-..+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 4555666655553 22222111 1223556666666555421 1 01112334444444444443211 000 0001123
Q ss_pred CcccEEEccCcc-cccccc-hhhccCCCCCEEEcCCCcccCc--cCccccCCCCccEEEccCCc-ccccccccc-ccCCc
Q 039650 218 TNLTTLYFSMNA-LSGSIP-NEITNLRSLSDLQLSENTLNGS--IPLALGNLTKLVVLYLSINK-LSGSISLSY-ASLTS 291 (391)
Q Consensus 218 ~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~-~~~~~ 291 (391)
+.+.++++..|. ++.... ..-..+..|+.|+.+++.-.+. ....-.++++|+.+.+.+++ +++.....+ .+++.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 445555554442 221111 1113567788888887743211 12223577999999999986 333222222 46789
Q ss_pred ccEEEcCCCccCc-h-hhHhhhCCCCccEEEcCCCc-ccchhHHHHHHh---hccccEEEcCCCcccCC-CcccccCCcc
Q 039650 292 LTNLYLYENSLCD-S-IQKEIGDMKSLSILDLSSNK-LNGSILLSLANL---TNSLKVLYLSSNHIVGE-IPLGHGKFSS 364 (391)
Q Consensus 292 L~~L~l~~~~~~~-~-~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~---~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 364 (391)
|+.+++.++.... . ....-.+++.|+.+.+++|. |++.+...+... ...|..+.+++|+.+.. ....+..|++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 9999999887532 2 23333478999999999885 666654444332 23788999999976533 5667789999
Q ss_pred ccEEEccccc-ccc-CCCccccccCCCc
Q 039650 365 LIQLILTNNE-LSG-QLSPELGSLIQLE 390 (391)
Q Consensus 365 L~~L~l~~~~-~~~-~~~~~~~~~~~L~ 390 (391)
||.+++.+|+ +++ .+..+-.++|+++
T Consensus 428 Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred cceeeeechhhhhhhhhHHHHhhCccce
Confidence 9999999995 443 2234445555544
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=5.2e-06 Score=79.36 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=87.9
Q ss_pred CCCcccEEEccCcccc-cccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccc-ccccccccCCccc
Q 039650 216 NLTNLTTLYFSMNALS-GSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSG-SISLSYASLTSLT 293 (391)
Q Consensus 216 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~ 293 (391)
.+|+|+.|.+.+-.+. ..+.....++|+|..||++++.++.. .+++.+++|+.|.+.+-.+.. .....+-.+++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 3677777777765442 22334456778888888888877633 566788888888888777664 2233445678888
Q ss_pred EEEcCCCccCchh------hHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCC
Q 039650 294 NLYLYENSLCDSI------QKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSN 349 (391)
Q Consensus 294 ~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~ 349 (391)
.||+|+....... .+....+|.|+.||.+++.+.....+.+...-|+|+.+..-+|
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 8888876543322 1222357889999999888887777777665567776665543
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.95 E-value=2.6e-05 Score=60.87 Aligned_cols=104 Identities=25% Similarity=0.183 Sum_probs=52.2
Q ss_pred cccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCc-cCccccCCCCccEEEc
Q 039650 195 SLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGS-IPLALGNLTKLVVLYL 273 (391)
Q Consensus 195 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l 273 (391)
....+++++|.+.. ...|..++.|.+|.+.+|.++.+.+..-.-+|+|..|.+.+|++... ....+..||+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34455555555532 22344555666666666665544443333445566666666555311 1123445566666666
Q ss_pred cCCcccc---ccccccccCCcccEEEcCCC
Q 039650 274 SINKLSG---SISLSYASLTSLTNLYLYEN 300 (391)
Q Consensus 274 ~~~~~~~---~~~~~~~~~~~L~~L~l~~~ 300 (391)
-+|.... .....+..+|+|+.||+++-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6665542 12233445566666666543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.1e-05 Score=47.12 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=25.8
Q ss_pred cccEEEcCCCcccCCCcccccCCccccEEEccccccc
Q 039650 340 SLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELS 376 (391)
Q Consensus 340 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 376 (391)
+|++|++++|+++ .++..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 6777888888777 45556778888888888888776
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=2.6e-05 Score=60.86 Aligned_cols=83 Identities=23% Similarity=0.262 Sum_probs=45.6
Q ss_pred CCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCc-hhhHhhhCCCCccEEEc
Q 039650 243 SLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCD-SIQKEIGDMKSLSILDL 321 (391)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l 321 (391)
+...+++++|.+.. ...|..++.|.+|.+.+|.++...+.-...+++|+.|.+.+|.+.. .....+..||+|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44555666665542 2234556666666666666665544444445566666666666533 11233445666666666
Q ss_pred CCCccc
Q 039650 322 SSNKLN 327 (391)
Q Consensus 322 ~~~~i~ 327 (391)
-+|++.
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 666554
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.83 E-value=7.6e-05 Score=56.00 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=11.8
Q ss_pred cccCCCCccEEEccCCccccccccccccCCcccEEEcC
Q 039650 261 ALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLY 298 (391)
Q Consensus 261 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 298 (391)
.|..+++++.+.+..+ +.......+..+ .++.+.+.
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 3344444444444332 222233333333 44444443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=2.5e-06 Score=62.10 Aligned_cols=106 Identities=26% Similarity=0.197 Sum_probs=67.7
Q ss_pred CCCEEEcCCCcccCccCc---cccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEE
Q 039650 243 SLSDLQLSENTLNGSIPL---ALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSIL 319 (391)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 319 (391)
.+..+++++|.+. .+++ .+.....|..+++++|.+.+........++.++.+++..|.+.+.+.+ +..+|.|+.+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhc
Confidence 4455666777654 2222 233445666677777777655444445666777778877777654443 7777888888
Q ss_pred EcCCCcccchhHHHHHHhhccccEEEcCCCccc
Q 039650 320 DLSSNKLNGSILLSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 320 ~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~ 352 (391)
+++.|.+. ..|..+..+- ++-.|+..++.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~-~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLI-KLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHH-hHHHhcCCCCccc
Confidence 88887776 4556665543 6777777777665
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.76 E-value=0.0001 Score=55.33 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=38.4
Q ss_pred cccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcc
Q 039650 141 EIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNL 220 (391)
Q Consensus 141 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 220 (391)
+|.++++|+.+.+.. .+.......|..+.+++.+.+..+ +.......+..+++++.+.+.+ .........|..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 445555555555543 233333444555555555555443 3323333445554555555543 2211222233444555
Q ss_pred cEEEccCcccccccchhhccCCCCCEEEcCC
Q 039650 221 TTLYFSMNALSGSIPNEITNLRSLSDLQLSE 251 (391)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 251 (391)
+.+.+..+ +.......|..+ .++.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55555432 222333334443 444444443
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=4.5e-05 Score=44.56 Aligned_cols=36 Identities=33% Similarity=0.580 Sum_probs=16.8
Q ss_pred CccEEecCCcccccCChhhhhcCCCCCEEEeeCCccC
Q 039650 46 SLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLK 82 (391)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 82 (391)
+|++|++++|.+. .++..+.++++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555554 34434445555555555555444
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.70 E-value=3.7e-06 Score=61.21 Aligned_cols=86 Identities=24% Similarity=0.353 Sum_probs=46.1
Q ss_pred hcCCcccEEeecCCcCCCCCCCCCC-CCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCc
Q 039650 18 GRLSSFNGLSLYSNFLKGSIPPSLG-NLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLV 96 (391)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 96 (391)
.+...|...++++|.+. .+|+.|. +++.+.++++.+|.+. .+|..+..++.|+.++++.|.+. ..|..+..+.++.
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 44445555566666554 3444443 3445566666665554 45555555566666666655555 4455555555555
Q ss_pred eEEecccccc
Q 039650 97 NLHLHINALS 106 (391)
Q Consensus 97 ~L~l~~~~~~ 106 (391)
.|+..++.+.
T Consensus 127 ~Lds~~na~~ 136 (177)
T KOG4579|consen 127 MLDSPENARA 136 (177)
T ss_pred HhcCCCCccc
Confidence 5555555443
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.52 E-value=1e-05 Score=75.76 Aligned_cols=111 Identities=20% Similarity=0.025 Sum_probs=57.4
Q ss_pred CCCCCCEEECCCCCCCCC--CCCCcCCCCCccEEEcCCC-cCCCCC----CccccCCCcccEEEccCCC-CCCCcccccc
Q 039650 144 NLKSLSDLRLDYNTLSGS--IPYSFGNLTKLVTLYLDTN-ALSGSI----PDEIRNLKSLFNLQLDNNT-LSGSIPLSLG 215 (391)
Q Consensus 144 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~ 215 (391)
.++.|+.+.+..+.-... .......+++|+.|++.++ ...... ......+++|+.++++.+. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666665532211 2233445677777777652 111111 1123445667777777666 4444333333
Q ss_pred C-CCcccEEEccCcc-cccccch-hhccCCCCCEEEcCCCcc
Q 039650 216 N-LTNLTTLYFSMNA-LSGSIPN-EITNLRSLSDLQLSENTL 254 (391)
Q Consensus 216 ~-~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~ 254 (391)
. +++|+.|.+.++. ++..... ....++.|++|++++|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2 5677777766555 3333222 223566677777776644
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00051 Score=60.98 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=89.1
Q ss_pred ccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCC-ccccccccccccCCcc
Q 039650 214 LGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSIN-KLSGSISLSYASLTSL 292 (391)
Q Consensus 214 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L 292 (391)
+..+..++.|++++|.++.. + .-.++|+.|.+++|.-....+..+ .++|++|.+++| .+. .. .++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL------P~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL------PESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc------cccc
Confidence 44568899999999877633 3 123479999999875433445433 368999999988 443 11 2568
Q ss_pred cEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHH-HHhhccccEEEcCCCcccCCCcccccCCccccEEEcc
Q 039650 293 TNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSL-ANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILT 371 (391)
Q Consensus 293 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 371 (391)
+.|++..+.... . . .-+++|+.|.+.++... ....+ ..+|++|+.|++++|... ..|..+. .+|+.|+++
T Consensus 115 e~L~L~~n~~~~-L-~--~LPssLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 115 RSLEIKGSATDS-I-K--NVPNGLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred ceEEeCCCCCcc-c-c--cCcchHhheeccccccc--cccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 888887655422 1 1 13357888888543311 01111 125568999999999866 4555555 589999988
Q ss_pred cc
Q 039650 372 NN 373 (391)
Q Consensus 372 ~~ 373 (391)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 76
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.42 E-value=0.00094 Score=59.32 Aligned_cols=136 Identities=17% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCc-ccccccchhhccCCCCCE
Q 039650 168 NLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMN-ALSGSIPNEITNLRSLSD 246 (391)
Q Consensus 168 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~ 246 (391)
.+.+++.|++.+|.+.. +| .-.++|+.|.+++|......+..+ .++|+.|.+.+| .+. .. .++|+.
T Consensus 50 ~~~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL------P~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL------PESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc------ccccce
Confidence 45677788887776653 23 123457777777654432333322 246777777766 222 11 235666
Q ss_pred EEcCCCcccCccCccccCC-CCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCC
Q 039650 247 LQLSENTLNGSIPLALGNL-TKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSN 324 (391)
Q Consensus 247 L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 324 (391)
|+++.+.... +..+ ++|+.|.+.++...........-.++|+.|.+++|.... .+.. -+.+|+.|.++.+
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEK--LPESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccc--ccccCcEEEeccc
Confidence 6665433221 1112 345555554322110000000112466666666665432 1111 2246666666554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=8.9e-05 Score=60.42 Aligned_cols=89 Identities=25% Similarity=0.272 Sum_probs=53.7
Q ss_pred hhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCc--ccccCChhhhhcCCCCCEEEeeCCccCC-CCcccccCCC
Q 039650 17 IGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNN--LLSGSIPNEVESLKSLSDLRLYNNTLKG-SIPSSLGNLT 93 (391)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~ 93 (391)
......|+.+++.+..++. -..+-.+++|++|+++.| .+.+.++.....+++|+++++++|++.. ..-..+..++
T Consensus 39 ~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 3455566777776665542 223556777888888777 4444444444556788888888877662 1112344556
Q ss_pred CCceEEeccccccc
Q 039650 94 NLVNLHLHINALSG 107 (391)
Q Consensus 94 ~L~~L~l~~~~~~~ 107 (391)
+|..|++.+|..+.
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 67777777776553
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=5.2e-05 Score=59.25 Aligned_cols=84 Identities=23% Similarity=0.184 Sum_probs=56.5
Q ss_pred cccEEEcCCCccCchhhHhhhCCCCccEEEcCCCc-ccchhHHHHHHhhccccEEEcCCC-cccCCCcccccCCccccEE
Q 039650 291 SLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNK-LNGSILLSLANLTNSLKVLYLSSN-HIVGEIPLGHGKFSSLIQL 368 (391)
Q Consensus 291 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L 368 (391)
.++.++-+++.+..+....+..+++++.|.+.+|+ +.+...+.+.+..++|+.|++++| +|++....++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45666667776666666666777777777777764 445556666666667777777777 4665566667777777777
Q ss_pred Eccccc
Q 039650 369 ILTNNE 374 (391)
Q Consensus 369 ~l~~~~ 374 (391)
.+.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=3.9e-05 Score=62.97 Aligned_cols=101 Identities=26% Similarity=0.241 Sum_probs=63.9
Q ss_pred CCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCch-hhHhhhCCCCccEE
Q 039650 241 LRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDS-IQKEIGDMKSLSIL 319 (391)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 319 (391)
+.+.++|+..+|.+.+. .....++.|+.|.++.|++.... .+..|++|+.|.|..|.|.+. ...-+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34567778888777522 23456788888888888876433 445677888888888777542 22345677888888
Q ss_pred EcCCCcccchhHHH----HHHhhccccEEE
Q 039650 320 DLSSNKLNGSILLS----LANLTNSLKVLY 345 (391)
Q Consensus 320 ~l~~~~i~~~~~~~----~~~~~~~L~~L~ 345 (391)
++..|...+..... .....|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88777665544332 223345666554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.82 E-value=0.00045 Score=64.72 Aligned_cols=132 Identities=27% Similarity=0.121 Sum_probs=61.6
Q ss_pred CCcccEEEccCcccccc--cchhhccCCCCCEEEcCCC-cccCc----cCccccCCCCccEEEccCCc-cccccccccc-
Q 039650 217 LTNLTTLYFSMNALSGS--IPNEITNLRSLSDLQLSEN-TLNGS----IPLALGNLTKLVVLYLSINK-LSGSISLSYA- 287 (391)
Q Consensus 217 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~- 287 (391)
.+.++.+.+.++..... .......++.|+.|+++++ ..... .......+++|+.++++.+. +++.....++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532211 2233345667777776652 11100 11123345666666666655 3332222222
Q ss_pred cCCcccEEEcCCCc-cCch-hhHhhhCCCCccEEEcCCCcc-cchhHHHHHHhhccccEEEcCC
Q 039650 288 SLTSLTNLYLYENS-LCDS-IQKEIGDMKSLSILDLSSNKL-NGSILLSLANLTNSLKVLYLSS 348 (391)
Q Consensus 288 ~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~i-~~~~~~~~~~~~~~L~~L~l~~ 348 (391)
.|+.|+.|.+.+|. +++. .......+++|+.|++++|.. ++.....+...+++++.|.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 25666666655555 3332 222333556666666665543 2333333333344555544433
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.00099 Score=54.50 Aligned_cols=39 Identities=36% Similarity=0.488 Sum_probs=16.1
Q ss_pred CCCCCEEEcCCC--cccCccCccccCCCCccEEEccCCccc
Q 039650 241 LRSLSDLQLSEN--TLNGSIPLALGNLTKLVVLYLSINKLS 279 (391)
Q Consensus 241 ~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~ 279 (391)
+|+|+.|.++.| +..+........+|+|+++++++|++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344444444444 222222222333345555555555443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.0012 Score=54.51 Aligned_cols=101 Identities=21% Similarity=0.107 Sum_probs=57.1
Q ss_pred CCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEE
Q 039650 265 LTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVL 344 (391)
Q Consensus 265 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 344 (391)
+.+.++|++++|.+.++. ....++.|+.|.|+-|.+.. ...+..|++|++|.+..|.|.+..........|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 445666777777665321 22456677777777776643 23456667777777777776654433333344467777
Q ss_pred EcCCCcccCCCc-----ccccCCccccEEE
Q 039650 345 YLSSNHIVGEIP-----LGHGKFSSLIQLI 369 (391)
Q Consensus 345 ~l~~~~~~~~~~-----~~~~~~~~L~~L~ 369 (391)
.|..|+-.+... .-++-+|+|++|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777665443322 1223456666553
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.62 E-value=0.0054 Score=29.60 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=12.1
Q ss_pred cccEEEccccccccCCCccccc
Q 039650 364 SLIQLILTNNELSGQLSPELGS 385 (391)
Q Consensus 364 ~L~~L~l~~~~~~~~~~~~~~~ 385 (391)
+|++|++++|+++ .+|+.+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 55555443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.27 E-value=0.00028 Score=64.79 Aligned_cols=91 Identities=31% Similarity=0.272 Sum_probs=52.6
Q ss_pred CCCCccEEEccCCcccccc----ccccccCCc-ccEEEcCCCccCchh----hHhhhCC-CCccEEEcCCCcccchhHHH
Q 039650 264 NLTKLVVLYLSINKLSGSI----SLSYASLTS-LTNLYLYENSLCDSI----QKEIGDM-KSLSILDLSSNKLNGSILLS 333 (391)
Q Consensus 264 ~~~~L~~l~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~l~~~~i~~~~~~~ 333 (391)
...+++++++..|.++... ...+...++ +..+++..|.+.+.. ...+..+ +.++.++++.|.|++.....
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 4566777777777665321 222333344 555777777765432 2233344 56677777777777665555
Q ss_pred HHHhh---ccccEEEcCCCcccCC
Q 039650 334 LANLT---NSLKVLYLSSNHIVGE 354 (391)
Q Consensus 334 ~~~~~---~~L~~L~l~~~~~~~~ 354 (391)
+.... +.++.+.+++|++++.
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccccH
Confidence 44432 2677777777777754
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=0.011 Score=46.67 Aligned_cols=76 Identities=22% Similarity=0.146 Sum_probs=57.7
Q ss_pred CCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCC-Ccccc-cCCccccEEEcccc-ccccCCCccccccCCCc
Q 039650 314 KSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGE-IPLGH-GKFSSLIQLILTNN-ELSGQLSPELGSLIQLE 390 (391)
Q Consensus 314 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~ 390 (391)
..++.++-+++.|..++.+.+..+. .++.|.+.+|.-.+. -.+.+ .-.++|+.|++++| +|+...-.++..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~-~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLR-SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccc-hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 3577899999999999988888776 899999999965543 22222 35689999999999 57766666666666654
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.38 E-value=0.018 Score=27.70 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=5.8
Q ss_pred ccEEecCCcccc
Q 039650 47 LSYIGISNNLLS 58 (391)
Q Consensus 47 L~~L~l~~~~~~ 58 (391)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444555555444
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.37 E-value=0.038 Score=27.22 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=12.1
Q ss_pred CCccEEEcCCCcccchhHHHH
Q 039650 314 KSLSILDLSSNKLNGSILLSL 334 (391)
Q Consensus 314 ~~L~~L~l~~~~i~~~~~~~~ 334 (391)
++|+.|++++|+|++.+..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566677777777666555554
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.61 E-value=0.044 Score=24.43 Aligned_cols=12 Identities=50% Similarity=0.562 Sum_probs=4.5
Q ss_pred cccEEEcccccc
Q 039650 364 SLIQLILTNNEL 375 (391)
Q Consensus 364 ~L~~L~l~~~~~ 375 (391)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 445555555543
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.56 E-value=0.0013 Score=60.50 Aligned_cols=203 Identities=26% Similarity=0.229 Sum_probs=110.3
Q ss_pred CCEEECCCCCCCCC----CCCCcCCCCCccEEEcCCCcCCCCCCc----cccCC-CcccEEEccCCCCCCCc----cccc
Q 039650 148 LSDLRLDYNTLSGS----IPYSFGNLTKLVTLYLDTNALSGSIPD----EIRNL-KSLFNLQLDNNTLSGSI----PLSL 214 (391)
Q Consensus 148 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~----~~~~ 214 (391)
+..+.+.+|.+.+. +...+...+.|..|++++|.+.+.... .+... +.++.|.+..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55556666655432 222344456677777777766532222 12222 44555666666554322 2223
Q ss_pred cCCCcccEEEccCcccccc----cchhhc----cCCCCCEEEcCCCcccCcc----CccccCCCC-ccEEEccCCccccc
Q 039650 215 GNLTNLTTLYFSMNALSGS----IPNEIT----NLRSLSDLQLSENTLNGSI----PLALGNLTK-LVVLYLSINKLSGS 281 (391)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~l~l~~~~~~~~ 281 (391)
...+.++.+++..|.+... ....+. ...+++.|.+.+|.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 3456666666666654311 112222 3456777888877765322 223334444 66688888887744
Q ss_pred cc----cccccC-CcccEEEcCCCccCch----hhHhhhCCCCccEEEcCCCcccchhHHHHHHhh---ccccEEEcCCC
Q 039650 282 IS----LSYASL-TSLTNLYLYENSLCDS----IQKEIGDMKSLSILDLSSNKLNGSILLSLANLT---NSLKVLYLSSN 349 (391)
Q Consensus 282 ~~----~~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~---~~L~~L~l~~~ 349 (391)
.. ..+..+ +.++.+++..|.+.+. ....+..++.++.+.++.|.+++.......... ..+..+.+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 22 222333 5678888888888653 334555677888888888888765544443322 14555555544
Q ss_pred c
Q 039650 350 H 350 (391)
Q Consensus 350 ~ 350 (391)
.
T Consensus 329 ~ 329 (478)
T KOG4308|consen 329 G 329 (478)
T ss_pred C
Confidence 3
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.59 E-value=0.33 Score=24.27 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=6.6
Q ss_pred CcccEEeecCCcCC
Q 039650 21 SSFNGLSLYSNFLK 34 (391)
Q Consensus 21 ~~L~~L~l~~~~~~ 34 (391)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.59 E-value=0.33 Score=24.27 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=6.6
Q ss_pred CcccEEeecCCcCC
Q 039650 21 SSFNGLSLYSNFLK 34 (391)
Q Consensus 21 ~~L~~L~l~~~~~~ 34 (391)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.23 E-value=0.0092 Score=48.14 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=64.2
Q ss_pred CchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccC
Q 039650 12 LIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGN 91 (391)
Q Consensus 12 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 91 (391)
+.-.++........||++.+.+. .+-.-|+.++.+..|+++-+.+. -.|..+.....+.+++.+.|..+ ..|.++..
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred cchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence 33445666677777888777664 34445666777777888777765 56666666666777777777666 67778888
Q ss_pred CCCCceEEecccccc
Q 039650 92 LTNLVNLHLHINALS 106 (391)
Q Consensus 92 l~~L~~L~l~~~~~~ 106 (391)
.+++++++...+.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 888888887777654
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.58 E-value=0.84 Score=23.39 Aligned_cols=23 Identities=48% Similarity=0.446 Sum_probs=14.0
Q ss_pred CCccEEEcCCCcccchhHHHHHH
Q 039650 314 KSLSILDLSSNKLNGSILLSLAN 336 (391)
Q Consensus 314 ~~L~~L~l~~~~i~~~~~~~~~~ 336 (391)
++|+.|++++|.+.+++...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 45667777777776655554443
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.01 E-value=0.71 Score=42.57 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=5.4
Q ss_pred CCcccEEEcCCC
Q 039650 289 LTSLTNLYLYEN 300 (391)
Q Consensus 289 ~~~L~~L~l~~~ 300 (391)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 344444444444
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.60 E-value=0.88 Score=22.75 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=9.5
Q ss_pred CCccEEEcCCCc-ccchhHH
Q 039650 314 KSLSILDLSSNK-LNGSILL 332 (391)
Q Consensus 314 ~~L~~L~l~~~~-i~~~~~~ 332 (391)
++|+.|++++|. +++....
T Consensus 2 ~~L~~L~l~~C~~itD~gl~ 21 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQ 21 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHH
Confidence 455555555553 5444433
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.64 E-value=0.99 Score=41.69 Aligned_cols=68 Identities=24% Similarity=0.226 Sum_probs=46.2
Q ss_pred cccCCcccEEEcCCCccCc--hhhHhhhCCCCccEEEcCCC--cccchhHHHHHHhhccccEEEcCCCcccCC
Q 039650 286 YASLTSLTNLYLYENSLCD--SIQKEIGDMKSLSILDLSSN--KLNGSILLSLANLTNSLKVLYLSSNHIVGE 354 (391)
Q Consensus 286 ~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~--~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 354 (391)
..+.+.+..+++++|++.. .....-+..|+|+.|+|++| .+.......-.... .|++|-+.||++...
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTT 285 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccc
Confidence 3467888889999988743 22233446799999999999 55432211112233 599999999998865
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.20 E-value=0.076 Score=43.08 Aligned_cols=88 Identities=20% Similarity=0.134 Sum_probs=59.6
Q ss_pred ccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCcc
Q 039650 285 SYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSS 364 (391)
Q Consensus 285 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 364 (391)
.+..+...+.||++.+++. ....-|+.++.+.+++++.|++. ..|..+.+.- .++.++..+|... -.|..+.+.|+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~-e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQR-ETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHH-HHHHHHhhccchh-hCCccccccCC
Confidence 3445566777777777653 23344555667777888877775 5666666554 5667777776666 57777888888
Q ss_pred ccEEEccccccc
Q 039650 365 LIQLILTNNELS 376 (391)
Q Consensus 365 L~~L~l~~~~~~ 376 (391)
+++++..++++.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888887754
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.35 E-value=1.8 Score=21.74 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=11.5
Q ss_pred ccccEEEccccccccCCCc
Q 039650 363 SSLIQLILTNNELSGQLSP 381 (391)
Q Consensus 363 ~~L~~L~l~~~~~~~~~~~ 381 (391)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35666777777766 5565
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.82 E-value=8.8 Score=19.28 Aligned_cols=12 Identities=58% Similarity=0.758 Sum_probs=6.1
Q ss_pred CccEEEcCCCcc
Q 039650 315 SLSILDLSSNKL 326 (391)
Q Consensus 315 ~L~~L~l~~~~i 326 (391)
+|+.|++++|+|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 445555555554
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=47.35 E-value=1e+02 Score=28.62 Aligned_cols=278 Identities=17% Similarity=0.049 Sum_probs=125.8
Q ss_pred CCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCC---
Q 039650 93 TNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNL--- 169 (391)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--- 169 (391)
+.+++++++.+.+....+..+..-..= +.++.+......+...... +.-..+.+++++.+...+..+..+..+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~q--sg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQ--SGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhh--hccccccccccccCCCCccchhHHHHhhhh
Confidence 456777777777666655544321110 1111221211111111111 111346778888777665555443322
Q ss_pred CCccEEEcCCCcCC-CCC--CccccCCCcccEEEccCCCCC--------CCccccccCCCcccEEEccCcccccccchhh
Q 039650 170 TKLVTLYLDTNALS-GSI--PDEIRNLKSLFNLQLDNNTLS--------GSIPLSLGNLTNLTTLYFSMNALSGSIPNEI 238 (391)
Q Consensus 170 ~~L~~L~l~~~~~~-~~~--~~~l~~~~~L~~L~l~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 238 (391)
.-++.++.....+. +.. +-......++...+++.+... ......++.-+++ .|++..+.........+
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~ 319 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSM 319 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhh
Confidence 23455555554432 111 112233355666666555332 1122233444555 66666654432211111
Q ss_pred ----cc--CCCCCEEEcCCCcccCc-cCccccCCCCccEEEccCCcccccccc--ccccCCcccEEEcCCCccCch----
Q 039650 239 ----TN--LRSLSDLQLSENTLNGS-IPLALGNLTKLVVLYLSINKLSGSISL--SYASLTSLTNLYLYENSLCDS---- 305 (391)
Q Consensus 239 ----~~--~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~---- 305 (391)
.. -+.=-.++++.|...+. .......=..++++.+..|...+.... .....++.+.+...+..-...
T Consensus 320 LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~ 399 (553)
T KOG4242|consen 320 LLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSS 399 (553)
T ss_pred hcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceecccc
Confidence 11 11112345555544211 111111224578888888877644322 223345666666654332110
Q ss_pred ---hhHhhh--CCCCccEEEcCCCcccchhHHHHHH--hhccccEEEcCCCcccCC----CcccccCCccccEEEccccc
Q 039650 306 ---IQKEIG--DMKSLSILDLSSNKLNGSILLSLAN--LTNSLKVLYLSSNHIVGE----IPLGHGKFSSLIQLILTNNE 374 (391)
Q Consensus 306 ---~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~--~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~ 374 (391)
.+.... ..--+..+.++.+......-..+.. ..+.+..|++++|...+. ++.....-..++.+.++.|.
T Consensus 400 ~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 400 TEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 000000 1123556777777766322222222 234788888888876654 45555555566666666654
Q ss_pred c
Q 039650 375 L 375 (391)
Q Consensus 375 ~ 375 (391)
.
T Consensus 480 p 480 (553)
T KOG4242|consen 480 P 480 (553)
T ss_pred c
Confidence 3
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.47 E-value=69 Score=36.81 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=28.9
Q ss_pred ccccCccCCCchhhhhcCCcccEEeecCCcCC
Q 039650 3 SFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLK 34 (391)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 34 (391)
||++|+|+.+....|.++++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999999999999999999999998664
Done!