Query 039650
Match_columns 391
No_of_seqs 189 out of 2832
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 20:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.4E-43 4.8E-48 345.7 25.7 387 2-391 228-708 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.8E-43 6.1E-48 344.9 25.9 378 2-382 252-723 (768)
3 3t6q_A CD180 antigen; protein- 100.0 3.6E-42 1.2E-46 328.6 29.7 386 2-389 38-526 (606)
4 3t6q_A CD180 antigen; protein- 100.0 2.5E-41 8.7E-46 322.7 28.5 368 21-390 33-503 (606)
5 4eco_A Uncharacterized protein 100.0 7.1E-41 2.4E-45 319.6 21.0 369 2-384 86-586 (636)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1E-40 3.4E-45 318.6 21.9 377 2-387 37-544 (606)
7 2z63_A TOLL-like receptor 4, v 100.0 4.3E-40 1.5E-44 312.2 22.3 381 1-390 32-521 (570)
8 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-38 8E-43 306.1 30.8 119 2-120 30-148 (680)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-38 4.1E-43 308.1 28.2 384 1-390 53-507 (680)
10 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-39 1.5E-43 307.3 24.6 375 1-380 60-562 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 6.9E-39 2.4E-43 303.9 24.5 377 1-381 56-536 (570)
12 4ecn_A Leucine-rich repeat pro 100.0 6.9E-39 2.4E-43 311.0 23.7 369 2-384 328-826 (876)
13 3j0a_A TOLL-like receptor 5; m 100.0 9E-39 3.1E-43 314.9 22.8 279 1-279 28-375 (844)
14 3v47_A TOLL-like receptor 5B a 100.0 4.6E-38 1.6E-42 289.9 25.3 354 21-380 30-412 (455)
15 4eco_A Uncharacterized protein 100.0 2E-38 6.8E-43 302.7 21.8 356 6-377 192-601 (636)
16 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-37 4.6E-42 306.5 23.0 383 1-386 52-549 (844)
17 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-37 8.5E-42 291.8 21.8 363 1-380 30-514 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 4.7E-37 1.6E-41 287.8 22.9 102 2-106 26-128 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 6.7E-37 2.3E-41 297.1 24.5 357 6-379 434-843 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 8.7E-37 3E-41 286.0 24.5 355 1-376 4-481 (520)
21 1o6v_A Internalin A; bacterial 100.0 3.1E-35 1.1E-39 271.3 32.3 339 2-377 51-389 (466)
22 3v47_A TOLL-like receptor 5B a 100.0 1.1E-36 3.8E-41 280.7 21.2 350 1-356 34-412 (455)
23 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-36 6.2E-41 285.9 19.4 376 3-390 11-500 (549)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.4E-35 1.2E-39 277.4 23.7 102 2-106 57-159 (562)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-35 1.2E-39 277.2 22.5 357 1-378 35-512 (562)
26 1o6v_A Internalin A; bacterial 100.0 3.4E-33 1.2E-37 257.6 32.0 336 18-390 43-378 (466)
27 4fmz_A Internalin; leucine ric 100.0 8.6E-33 2.9E-37 245.6 31.6 308 16-376 39-346 (347)
28 2id5_A Lingo-1, leucine rich r 100.0 4.2E-34 1.4E-38 264.9 22.5 317 4-328 18-334 (477)
29 2id5_A Lingo-1, leucine rich r 100.0 3.4E-34 1.2E-38 265.5 21.9 321 23-352 13-333 (477)
30 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-33 1.1E-37 268.4 26.9 371 1-377 56-581 (635)
31 4fmz_A Internalin; leucine ric 100.0 9.5E-32 3.2E-36 238.8 30.3 298 2-352 49-346 (347)
32 3o6n_A APL1; leucine-rich repe 100.0 1.9E-32 6.6E-37 247.0 24.9 310 20-377 44-353 (390)
33 3o6n_A APL1; leucine-rich repe 100.0 9.4E-32 3.2E-36 242.5 24.7 303 2-352 50-352 (390)
34 3oja_B Anopheles plasmodium-re 100.0 1.3E-31 4.5E-36 254.3 24.7 309 21-377 51-359 (597)
35 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-31 7.4E-36 243.7 24.5 336 12-384 33-395 (457)
36 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-31 6E-36 256.3 23.1 363 22-390 53-570 (635)
37 3oja_B Anopheles plasmodium-re 100.0 8.4E-31 2.9E-35 248.7 24.9 305 2-329 56-360 (597)
38 1z7x_W Ribonuclease inhibitor; 100.0 2.4E-34 8.4E-39 265.5 -1.1 371 1-377 7-441 (461)
39 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-29 4.5E-34 231.9 27.0 309 30-377 27-353 (457)
40 1jl5_A Outer protein YOPM; leu 100.0 1.9E-29 6.3E-34 230.7 22.3 242 2-279 16-290 (454)
41 2ft3_A Biglycan; proteoglycan, 100.0 2E-29 6.7E-34 222.3 21.3 289 46-374 34-331 (332)
42 1xku_A Decorin; proteoglycan, 100.0 1.8E-28 6.2E-33 216.0 26.4 289 22-350 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-28 3.8E-33 217.5 23.2 288 22-350 34-331 (332)
44 1jl5_A Outer protein YOPM; leu 100.0 5.5E-28 1.9E-32 221.0 27.7 329 2-386 76-421 (454)
45 1xku_A Decorin; proteoglycan, 100.0 4.3E-28 1.5E-32 213.5 25.7 285 2-325 36-330 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 3E-32 1E-36 251.6 -3.6 354 20-378 2-413 (461)
47 1ogq_A PGIP-2, polygalacturona 100.0 4.7E-29 1.6E-33 217.5 13.5 249 22-302 51-303 (313)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-28 5E-33 214.4 13.3 235 138-376 68-304 (313)
49 3ogk_B Coronatine-insensitive 100.0 2.1E-30 7.2E-35 246.7 -0.6 236 142-378 266-528 (592)
50 2z66_A Variable lymphocyte rec 99.9 1.7E-26 6E-31 201.1 17.8 248 24-328 10-262 (306)
51 2z80_A TOLL-like receptor 2, v 99.9 1.8E-26 6E-31 205.1 17.8 281 18-330 28-317 (353)
52 2z80_A TOLL-like receptor 2, v 99.9 2E-26 6.8E-31 204.8 17.4 279 43-379 29-317 (353)
53 2z66_A Variable lymphocyte rec 99.9 2.6E-26 9E-31 200.0 16.9 246 2-279 12-261 (306)
54 3ogk_B Coronatine-insensitive 99.9 2.2E-28 7.4E-33 232.9 2.5 317 67-390 162-516 (592)
55 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-25 7.1E-30 192.2 19.8 267 48-373 14-284 (285)
56 4fcg_A Uncharacterized protein 99.9 2E-25 6.9E-30 195.7 19.6 236 19-279 79-314 (328)
57 2p1m_B Transport inhibitor res 99.9 3.7E-29 1.3E-33 238.2 -5.3 353 17-377 101-520 (594)
58 3zyj_A Leucine-rich repeat-con 99.9 1.5E-24 5.2E-29 198.4 22.4 246 47-302 45-291 (440)
59 4fcg_A Uncharacterized protein 99.9 9.1E-25 3.1E-29 191.5 19.1 234 45-327 81-314 (328)
60 3zyi_A Leucine-rich repeat-con 99.9 9.6E-25 3.3E-29 200.4 20.1 229 146-377 75-304 (452)
61 3zyi_A Leucine-rich repeat-con 99.9 2.4E-24 8.1E-29 197.8 22.4 246 23-278 56-302 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 2.9E-24 9.9E-29 196.5 22.6 247 23-279 45-292 (440)
63 1ozn_A Reticulon 4 receptor; N 99.9 5.9E-25 2E-29 189.4 16.6 239 145-385 31-270 (285)
64 2p1m_B Transport inhibitor res 99.9 3.6E-27 1.2E-31 224.5 0.9 373 14-390 59-509 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-25 5.4E-30 195.8 10.1 232 142-388 30-263 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-25 1.8E-29 192.4 11.1 262 48-353 13-277 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.9 4E-23 1.4E-27 194.5 24.3 265 21-359 40-304 (622)
68 3oja_A Leucine-rich immune mol 99.9 2.7E-24 9.3E-29 198.5 13.0 231 144-389 32-264 (487)
69 3g06_A SSPH2 (leucine-rich rep 99.9 7.3E-22 2.5E-26 186.0 29.5 265 1-338 44-308 (622)
70 1wwl_A Monocyte differentiatio 99.9 1.5E-24 5.1E-29 189.1 8.4 256 17-328 39-310 (312)
71 3oja_A Leucine-rich immune mol 99.9 6.5E-24 2.2E-28 195.9 10.5 235 20-297 33-269 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 1.5E-22 5.1E-27 173.5 17.8 206 171-378 29-239 (276)
73 2o6q_A Variable lymphocyte rec 99.9 1.1E-21 3.8E-26 167.3 19.7 203 146-352 16-218 (270)
74 3rfs_A Internalin B, repeat mo 99.9 3.2E-22 1.1E-26 170.9 15.2 212 142-365 37-248 (272)
75 2o6q_A Variable lymphocyte rec 99.9 3.3E-21 1.1E-25 164.4 20.3 199 127-328 21-219 (270)
76 1wwl_A Monocyte differentiatio 99.9 5.8E-22 2E-26 172.7 15.5 224 2-256 68-310 (312)
77 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4.1E-28 189.2 4.5 267 60-348 23-339 (386)
78 2z62_A TOLL-like receptor 4, v 99.9 2.9E-21 9.9E-26 165.4 18.8 60 46-105 29-88 (276)
79 3rfs_A Internalin B, repeat mo 99.9 2E-21 6.7E-26 165.9 15.6 212 165-388 36-247 (272)
80 2ca6_A RAN GTPase-activating p 99.9 8.3E-23 2.8E-27 183.7 5.4 242 138-379 24-319 (386)
81 2ast_B S-phase kinase-associat 99.9 1.9E-22 6.5E-27 178.1 7.4 257 46-361 48-315 (336)
82 1p9a_G Platelet glycoprotein I 99.9 1.1E-20 3.9E-25 162.4 18.2 204 141-352 5-208 (290)
83 3goz_A Leucine-rich repeat-con 99.9 2.5E-22 8.4E-27 178.9 7.2 246 133-378 9-299 (362)
84 1p9a_G Platelet glycoprotein I 99.9 1.3E-20 4.4E-25 162.1 17.6 204 113-328 6-209 (290)
85 2ast_B S-phase kinase-associat 99.9 2.9E-22 9.8E-27 176.9 6.9 235 146-385 70-315 (336)
86 3goz_A Leucine-rich repeat-con 99.9 2.5E-22 8.4E-27 178.9 5.4 259 2-305 3-299 (362)
87 1h6u_A Internalin H; cell adhe 99.8 1.1E-19 3.9E-24 157.7 18.9 194 143-353 38-231 (308)
88 2xwt_C Thyrotropin receptor; s 99.8 4.3E-20 1.5E-24 154.6 14.4 196 46-276 32-236 (239)
89 2xwt_C Thyrotropin receptor; s 99.8 2.6E-20 8.8E-25 155.9 12.5 198 171-374 32-237 (239)
90 3m19_A Variable lymphocyte rec 99.8 1.3E-19 4.4E-24 152.8 16.8 179 171-353 15-193 (251)
91 1h6u_A Internalin H; cell adhe 99.8 2.4E-19 8.3E-24 155.6 18.9 193 18-279 38-230 (308)
92 3m19_A Variable lymphocyte rec 99.8 5.6E-19 1.9E-23 148.9 20.2 181 146-329 14-194 (251)
93 4glp_A Monocyte differentiatio 99.8 2.3E-20 7.9E-25 162.5 11.7 107 168-279 195-307 (310)
94 4glp_A Monocyte differentiatio 99.8 1.7E-19 5.8E-24 157.0 14.1 233 45-328 64-308 (310)
95 2o6s_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 142.3 12.8 181 173-364 10-190 (208)
96 2o6s_A Variable lymphocyte rec 99.8 8.4E-18 2.9E-22 137.4 14.8 159 170-335 28-186 (208)
97 4ay9_X Follicle-stimulating ho 99.7 5.1E-17 1.7E-21 143.8 17.6 240 24-300 12-256 (350)
98 1h6t_A Internalin B; cell adhe 99.7 2.6E-17 8.8E-22 141.6 14.7 171 18-231 43-213 (291)
99 1h6t_A Internalin B; cell adhe 99.7 2.8E-17 9.5E-22 141.4 14.4 174 166-354 42-215 (291)
100 4ay9_X Follicle-stimulating ho 99.7 1E-16 3.5E-21 141.9 17.5 196 3-207 15-215 (350)
101 4fs7_A Uncharacterized protein 99.7 1E-16 3.5E-21 144.2 17.4 331 36-391 62-392 (394)
102 1m9s_A Internalin B; cell inva 99.7 8.9E-17 3.1E-21 151.2 16.4 184 3-231 27-210 (605)
103 3sb4_A Hypothetical leucine ri 99.7 8E-18 2.7E-22 147.7 7.8 219 145-369 100-327 (329)
104 2v9t_B SLIT homolog 2 protein 99.7 1E-16 3.5E-21 131.9 12.3 152 197-352 14-165 (220)
105 1m9s_A Internalin B; cell inva 99.7 1.9E-16 6.4E-21 149.1 15.5 188 166-368 39-226 (605)
106 3cvr_A Invasion plasmid antige 99.7 1.4E-16 4.8E-21 148.3 14.3 188 146-362 59-253 (571)
107 4ezg_A Putative uncharacterize 99.7 2.9E-16 9.8E-21 127.0 13.4 154 215-377 41-195 (197)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 2.3E-16 7.7E-21 129.8 12.3 153 197-353 14-167 (220)
109 3e6j_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 129.0 13.8 153 195-352 20-172 (229)
110 2v9t_B SLIT homolog 2 protein 99.7 1.1E-15 3.8E-20 125.7 15.4 152 149-327 14-165 (220)
111 4ezg_A Putative uncharacterize 99.7 4.3E-16 1.5E-20 126.0 12.5 154 17-207 40-194 (197)
112 3e6j_A Variable lymphocyte rec 99.7 1.2E-15 4.2E-20 126.3 15.5 152 23-207 21-172 (229)
113 2xot_A Amphoterin-induced prot 99.7 6.2E-16 2.1E-20 137.4 14.5 176 149-327 21-202 (361)
114 2xot_A Amphoterin-induced prot 99.7 7.2E-16 2.5E-20 136.9 14.9 176 173-352 21-202 (361)
115 3cvr_A Invasion plasmid antige 99.7 1.6E-15 5.4E-20 141.2 17.4 178 22-256 60-244 (571)
116 1xeu_A Internalin C; cellular 99.7 4.2E-16 1.4E-20 131.9 11.1 170 169-354 18-187 (263)
117 4fdw_A Leucine rich hypothetic 99.7 2.4E-15 8.3E-20 134.6 16.4 267 18-302 110-382 (401)
118 3sb4_A Hypothetical leucine ri 99.6 4.3E-16 1.5E-20 136.6 10.5 246 17-273 44-328 (329)
119 1xeu_A Internalin C; cellular 99.6 1.3E-15 4.5E-20 128.8 12.9 168 20-231 18-185 (263)
120 2v70_A SLIT-2, SLIT homolog 2 99.6 4E-15 1.4E-19 122.3 15.5 152 149-327 14-166 (220)
121 4fdw_A Leucine rich hypothetic 99.6 6.9E-15 2.4E-19 131.7 17.4 267 42-326 110-382 (401)
122 4fs7_A Uncharacterized protein 99.6 1.2E-14 4E-19 130.8 17.1 336 8-368 58-393 (394)
123 2ell_A Acidic leucine-rich nuc 99.6 3.4E-15 1.2E-19 117.4 9.3 136 242-381 24-164 (168)
124 2je0_A Acidic leucine-rich nuc 99.6 5.7E-15 1.9E-19 113.7 10.3 129 241-372 16-149 (149)
125 1dce_A Protein (RAB geranylger 99.6 4E-16 1.4E-20 146.0 2.3 176 68-255 348-546 (567)
126 4gt6_A Cell surface protein; l 99.5 2.4E-13 8.1E-18 122.2 17.9 321 11-375 53-390 (394)
127 2ell_A Acidic leucine-rich nuc 99.5 3.6E-14 1.2E-18 111.5 10.6 132 218-352 24-160 (168)
128 2je0_A Acidic leucine-rich nuc 99.5 6.2E-14 2.1E-18 107.8 11.1 129 217-348 16-149 (149)
129 1w8a_A SLIT protein; signaling 99.5 5.5E-14 1.9E-18 113.0 10.0 130 221-354 11-141 (192)
130 1dce_A Protein (RAB geranylger 99.5 8.3E-16 2.9E-20 143.8 -1.3 202 42-249 346-567 (567)
131 1w8a_A SLIT protein; signaling 99.5 3.4E-13 1.2E-17 108.3 13.4 130 197-329 11-141 (192)
132 4gt6_A Cell surface protein; l 99.5 1.4E-12 4.6E-17 117.3 18.5 311 9-349 75-388 (394)
133 4b8c_D Glucose-repressible alc 99.5 4E-14 1.4E-18 136.6 7.7 152 187-349 217-369 (727)
134 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-13 3.7E-18 109.6 8.2 110 215-327 16-126 (176)
135 2o6r_A Variable lymphocyte rec 99.5 2.8E-13 9.6E-18 107.4 10.6 130 220-353 9-138 (177)
136 2o6r_A Variable lymphocyte rec 99.5 1.2E-12 4.1E-17 103.7 13.7 132 196-330 9-140 (177)
137 2wfh_A SLIT homolog 2 protein 99.4 1.5E-12 5.2E-17 104.4 13.2 127 197-327 13-139 (193)
138 4b8c_D Glucose-repressible alc 99.4 5.8E-14 2E-18 135.5 4.8 143 211-357 217-359 (727)
139 2wfh_A SLIT homolog 2 protein 99.4 3.7E-12 1.3E-16 102.2 14.4 126 149-278 13-138 (193)
140 1a9n_A U2A', U2A'; complex (nu 99.4 8.5E-13 2.9E-17 104.4 10.5 132 191-326 16-152 (176)
141 3un9_A NLR family member X1; l 99.3 1.6E-13 5.4E-18 121.7 2.0 90 265-354 154-254 (372)
142 1ds9_A Outer arm dynein; leuci 99.3 3.2E-14 1.1E-18 115.0 -3.2 110 237-352 43-153 (198)
143 3un9_A NLR family member X1; l 99.3 1.7E-13 5.8E-18 121.5 0.8 165 217-381 71-257 (372)
144 4h09_A Hypothetical leucine ri 99.3 1.5E-10 5.2E-15 103.4 19.6 305 40-364 41-357 (379)
145 4h09_A Hypothetical leucine ri 99.3 1.8E-10 6.3E-15 102.9 19.9 301 16-335 41-353 (379)
146 1ds9_A Outer arm dynein; leuci 99.3 9.1E-14 3.1E-18 112.3 -1.7 132 213-352 43-185 (198)
147 3g39_A Variable lymphocyte rec 99.3 8.8E-12 3E-16 97.8 9.7 103 2-107 14-116 (170)
148 2r9u_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 97.1 9.8 103 2-107 17-119 (174)
149 3g39_A Variable lymphocyte rec 99.2 1.6E-10 5.4E-15 90.6 10.3 105 221-328 12-116 (170)
150 2r9u_A Variable lymphocyte rec 99.1 2.2E-10 7.5E-15 90.1 10.3 86 242-327 33-118 (174)
151 2ra8_A Uncharacterized protein 99.1 2.6E-10 8.8E-15 100.2 8.4 178 168-350 137-341 (362)
152 2ra8_A Uncharacterized protein 99.0 4.9E-10 1.7E-14 98.4 8.9 200 170-374 107-341 (362)
153 2ifg_A High affinity nerve gro 99.0 7E-10 2.4E-14 97.8 8.8 103 2-107 13-117 (347)
154 3e4g_A ATP synthase subunit S, 98.9 1.4E-09 4.7E-14 84.0 4.5 85 290-374 61-150 (176)
155 2ifg_A High affinity nerve gro 98.8 1.8E-08 6.1E-13 88.8 11.1 103 198-303 12-116 (347)
156 1io0_A Tropomodulin; LRR prote 98.7 9.4E-09 3.2E-13 81.6 5.6 117 236-352 30-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.6 4.3E-08 1.5E-12 77.7 6.6 113 263-375 33-163 (185)
158 3e4g_A ATP synthase subunit S, 98.6 1.1E-07 3.8E-12 73.4 6.4 84 266-350 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 4.7E-07 1.6E-11 75.4 1.9 40 19-58 168-209 (267)
160 3rw6_A Nuclear RNA export fact 98.0 2.3E-06 7.8E-11 71.3 3.6 81 287-369 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 2.7E-05 9.4E-10 61.2 5.4 85 239-323 38-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00023 8E-09 55.9 7.4 111 216-326 39-169 (197)
163 3rfe_A Platelet glycoprotein I 95.4 0.016 5.3E-07 42.3 4.2 55 294-352 12-68 (130)
164 3rfe_A Platelet glycoprotein I 95.2 0.035 1.2E-06 40.5 5.5 38 290-327 31-68 (130)
165 2lz0_A Uncharacterized protein 86.1 1.2 4.1E-05 30.4 4.7 46 8-54 7-52 (100)
166 2lz0_A Uncharacterized protein 74.5 9.8 0.00034 25.8 6.1 48 31-79 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-43 Score=345.69 Aligned_cols=387 Identities=33% Similarity=0.468 Sum_probs=257.5
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhc-CCCCCEEEeeCCc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVES-LKSLSDLRLYNNT 80 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~ 80 (391)
|++++|++++..+..+.++++|++|++++|.+.+..|.. .+++|++|++++|.+.+.+|..+.. +++|++|++++|.
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred EECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence 455555555555555566666666666655554333322 4444555555554444444444433 2556666666555
Q ss_pred cCCCCcccccCCCCCceEEecccccccccch-hhcccccchhhhhc--------------------eeeecccccccccc
Q 039650 81 LKGSIPSSLGNLTNLVNLHLHINALSGLIPD-EIRNLEFLSDLIYN--------------------YLIYWINALSDLIP 139 (391)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~l~l~--------------------~~~~~~~~~~~~~~ 139 (391)
+.+..|..+..+++|++|++++|.+.+..+. .+.++++|+.|.+. .+.+..+.+....+
T Consensus 306 l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence 5555555555566666666666555533332 25555555533222 12222222222223
Q ss_pred ccccC--CCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCC
Q 039650 140 NEIGN--LKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNL 217 (391)
Q Consensus 140 ~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 217 (391)
..+.. +++|+.|++++|.+.+..+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 33332 4556666666666655566667777777777777777766666777777788888888777776667777777
Q ss_pred CcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEc
Q 039650 218 TNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYL 297 (391)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 297 (391)
++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 88888888888777677777788888888888888887777777788888888888888887777777778888888888
Q ss_pred CCCccCchhhH---------------------------------------------------------------------
Q 039650 298 YENSLCDSIQK--------------------------------------------------------------------- 308 (391)
Q Consensus 298 ~~~~~~~~~~~--------------------------------------------------------------------- 308 (391)
++|.+....+.
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 88876432221
Q ss_pred -hhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccccCCCccccccC
Q 039650 309 -EIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSLI 387 (391)
Q Consensus 309 -~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 387 (391)
.+..+++|+.|++++|++++.+|..+..+. +|+.|++++|.+++.+|..++++++|+.|++++|++++.+|..+++++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 122346788888888888888888887776 888889988888888888888888899999999988888888888888
Q ss_pred CCcC
Q 039650 388 QLEY 391 (391)
Q Consensus 388 ~L~~ 391 (391)
.|++
T Consensus 705 ~L~~ 708 (768)
T 3rgz_A 705 MLTE 708 (768)
T ss_dssp CCSE
T ss_pred CCCE
Confidence 7763
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-43 Score=344.94 Aligned_cols=378 Identities=38% Similarity=0.521 Sum_probs=298.9
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCC-CCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGN-LTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
|++++|++++..+.. .+++|++|++++|.+.+..|..+.. +++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 456666665444433 5566666666666555455555544 3666666666666555555556666666666666665
Q ss_pred cCCCCccc-ccCCCCCceEEecccccccccchhhcccc-cchhhh---------------------hceeeecccccccc
Q 039650 81 LKGSIPSS-LGNLTNLVNLHLHINALSGLIPDEIRNLE-FLSDLI---------------------YNYLIYWINALSDL 137 (391)
Q Consensus 81 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~l~---------------------l~~~~~~~~~~~~~ 137 (391)
+.+.+|.. +..+++|++|++++|.+.+..|..+.++. +|+.+. +..+.+..+.+...
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 55444433 55566666666666655544444444433 333332 22555666777777
Q ss_pred ccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCC
Q 039650 138 IPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNL 217 (391)
Q Consensus 138 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 217 (391)
.+..+.++++|+.|++++|.+.+..+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 88899999999999999999988888899999999999999999998888899999999999999999988888889999
Q ss_pred CcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccccc-------------
Q 039650 218 TNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISL------------- 284 (391)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~------------- 284 (391)
++|+.|++++|.+.+..+.++..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+.
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 9999999999999888999999999999999999999988899999999999999999987633221
Q ss_pred ---------------------------------------------------------ccccCCcccEEEcCCCccCchhh
Q 039650 285 ---------------------------------------------------------SYASLTSLTNLYLYENSLCDSIQ 307 (391)
Q Consensus 285 ---------------------------------------------------------~~~~~~~L~~L~l~~~~~~~~~~ 307 (391)
.+..+++|+.|++++|.+....+
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 12335789999999999988888
Q ss_pred HhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccccCCCcc
Q 039650 308 KEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPE 382 (391)
Q Consensus 308 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 382 (391)
..+..+++|+.|++++|++++.+|..+..+. +|+.|++++|++++.+|..+.+++.|++|++++|+++|.+|+.
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999999999999998887 9999999999999999999999999999999999999999963
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.6e-42 Score=328.56 Aligned_cols=386 Identities=22% Similarity=0.199 Sum_probs=231.6
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCC
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCc
Confidence 55666666655555666666666666666655555555566666666666666655544444555555555555555544
Q ss_pred CCCCcccccC------------------------CCCCceEEecccccccccchhhcccccch--hhh------------
Q 039650 82 KGSIPSSLGN------------------------LTNLVNLHLHINALSGLIPDEIRNLEFLS--DLI------------ 123 (391)
Q Consensus 82 ~~~~~~~~~~------------------------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~l~------------ 123 (391)
++..+..+.. +++|++|++++|.+....+..+..+.+++ .+.
T Consensus 118 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~ 197 (606)
T 3t6q_A 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197 (606)
T ss_dssp SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTT
T ss_pred ccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChh
Confidence 4332333344 45555555555555544455555555554 221
Q ss_pred ----------------------------------------------------------hceeeeccccccccccccccCC
Q 039650 124 ----------------------------------------------------------YNYLIYWINALSDLIPNEIGNL 145 (391)
Q Consensus 124 ----------------------------------------------------------l~~~~~~~~~~~~~~~~~~~~~ 145 (391)
+..+.+..+.+....+..++.+
T Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l 277 (606)
T 3t6q_A 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277 (606)
T ss_dssp TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTC
T ss_pred HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccc
Confidence 1122222333333444456777
Q ss_pred CCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCc-cccccCCCcccEEE
Q 039650 146 KSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSI-PLSLGNLTNLTTLY 224 (391)
Q Consensus 146 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 224 (391)
++|+.|+++++.++ .+|..+..+++|++|++.+|.+....+..+..+++|+.|++++|.+.... ...+..+++|+.|+
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 78888888888777 55667777788888888888777555566677777777777777654222 23356667777777
Q ss_pred ccCccccccc--chhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccc-cccccCCcccEEEcCCCc
Q 039650 225 FSMNALSGSI--PNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSIS-LSYASLTSLTNLYLYENS 301 (391)
Q Consensus 225 l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 301 (391)
+++|.+.... +..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+....+ ..+..+++|+.|++++|.
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 7777665433 4456666777777777776665556666666777777777776654432 235566667777777776
Q ss_pred cCchhhHhhhCCCCccEEEcCCCcccchhH---HHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccccC
Q 039650 302 LCDSIQKEIGDMKSLSILDLSSNKLNGSIL---LSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQ 378 (391)
Q Consensus 302 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 378 (391)
+....+..+..+++|+.|++++|++++... ..+..+. +|+.|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 655555566666677777777766654211 2333333 666666666666655566666666666666666666666
Q ss_pred CCccccccCCC
Q 039650 379 LSPELGSLIQL 389 (391)
Q Consensus 379 ~~~~~~~~~~L 389 (391)
.|+.+.+++.|
T Consensus 516 ~~~~l~~l~~L 526 (606)
T 3t6q_A 516 SIEALSHLKGI 526 (606)
T ss_dssp GGGGGTTCCSC
T ss_pred ChhHhCccccc
Confidence 66666555544
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-41 Score=322.71 Aligned_cols=368 Identities=22% Similarity=0.224 Sum_probs=222.3
Q ss_pred CcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEe
Q 039650 21 SSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHL 100 (391)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 100 (391)
+.+++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 37999999999999888999999999999999999998778889999999999999999998778889999999999999
Q ss_pred cccccccccchhhcccccchhhhhce-------------------eeeccccccccccccccCCCCCC--EEECCCCCCC
Q 039650 101 HINALSGLIPDEIRNLEFLSDLIYNY-------------------LIYWINALSDLIPNEIGNLKSLS--DLRLDYNTLS 159 (391)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~L~~l~l~~-------------------~~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~ 159 (391)
++|.+....+..+.++++|+.|.+.. +.+..+.+....+..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999987777888888888554332 11222222222333344444444 4444444333
Q ss_pred CCCCCCcCCC---------------------------------------------------CCccEEEcCCCcCCCCCCc
Q 039650 160 GSIPYSFGNL---------------------------------------------------TKLVTLYLDTNALSGSIPD 188 (391)
Q Consensus 160 ~~~~~~~~~~---------------------------------------------------~~L~~L~l~~~~~~~~~~~ 188 (391)
...+..+... .+++.+++.+|.+....+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 2211111100 0233333333333333333
Q ss_pred cccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcc--------------
Q 039650 189 EIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTL-------------- 254 (391)
Q Consensus 189 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------- 254 (391)
.+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 3455555566666555554 3444455555555555555555444444444445555555554443
Q ss_pred -----------cCcc--CccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhh-HhhhCCCCccEEE
Q 039650 255 -----------NGSI--PLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQ-KEIGDMKSLSILD 320 (391)
Q Consensus 255 -----------~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 320 (391)
.+.. +..+..+++|+++++++|.+.+..+..+..+++|+.|++++|.+....+ ..+..+++|+.|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 3222 2334444555555555554444444444555555555555555543222 2355566666666
Q ss_pred cCCCcccchhHHHHHHhhccccEEEcCCCcccCC---CcccccCCccccEEEccccccccCCCccccccCCCc
Q 039650 321 LSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGE---IPLGHGKFSSLIQLILTNNELSGQLSPELGSLIQLE 390 (391)
Q Consensus 321 l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 390 (391)
+++|.+.+..+..+..++ +|++|++++|++.+. .+..+..+++|++|++++|.+.+..|..++.+++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp CTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence 666666554444444443 666666666666542 224456667777777777776666666666666665
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.1e-41 Score=319.56 Aligned_cols=369 Identities=24% Similarity=0.314 Sum_probs=296.2
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcC------------------------------------------------
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFL------------------------------------------------ 33 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------------------------------------------ 33 (391)
|+++++++.+..+..+.++++|++|++++|.+
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l 165 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence 68899999988899999999999999988843
Q ss_pred ------------------------------CCCCCCCCCCCCCccEEecCCcccccC-----------------Chhhhh
Q 039650 34 ------------------------------KGSIPPSLGNLTSLSYIGISNNLLSGS-----------------IPNEVE 66 (391)
Q Consensus 34 ------------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~ 66 (391)
.+ .|..++++++|++|++++|.+.+. +|..+.
T Consensus 166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred hhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence 22 567788999999999999998864 888888
Q ss_pred --cCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccc-ccc-ccchhhccc------ccchhhhhceeeeccccccc
Q 039650 67 --SLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINA-LSG-LIPDEIRNL------EFLSDLIYNYLIYWINALSD 136 (391)
Q Consensus 67 --~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~l~l~~~~~~~~~~~~ 136 (391)
++++|++|++++|.+.+.+|..+..+++|++|++++|. +++ ..|..+..+ ++|+ .+.+..+.+.
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-----~L~L~~n~l~- 318 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-----IIYIGYNNLK- 318 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-----EEECCSSCCS-
T ss_pred hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC-----EEECCCCcCC-
Confidence 89999999999999888899999999999999999998 876 677777776 7777 4555556666
Q ss_pred cccc--cccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCc-ccEEEccCCCCCCCcccc
Q 039650 137 LIPN--EIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKS-LFNLQLDNNTLSGSIPLS 213 (391)
Q Consensus 137 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~ 213 (391)
.++. .++++++|+.|++++|.+.+.++ .+..+++|+.|++.+|.+. ..+..+..+++ |+.|++++|.+. ..+..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 5666 78899999999999998885666 7888899999999999887 66667888888 999999999887 56666
Q ss_pred ccCCC--cccEEEccCcccccccchhhc-------cCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccccc
Q 039650 214 LGNLT--NLTTLYFSMNALSGSIPNEIT-------NLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISL 284 (391)
Q Consensus 214 ~~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 284 (391)
+...+ +|+.|++++|.+....+..+. .+++|+.|++++|.+.......+..+++|++|++++|.+......
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 65543 899999999988776666666 667889999999988855555566788999999999988744443
Q ss_pred ccccC-------CcccEEEcCCCccCchhhHhhh--CCCCccEEEcCCCcccchhHHHHHHhhccccEEEcC------CC
Q 039650 285 SYASL-------TSLTNLYLYENSLCDSIQKEIG--DMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLS------SN 349 (391)
Q Consensus 285 ~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~------~~ 349 (391)
.+... ++|+.|++++|.+.. .+..+. .+++|+.|++++|++++ +|..+..+. +|+.|+++ +|
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~-~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS-TLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS-SCCEEECCSCBCTTCC
T ss_pred HhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC-CCCEEECCCCcccccC
Confidence 43332 388999999998874 344444 88899999999998886 677776655 89999984 56
Q ss_pred cccCCCcccccCCccccEEEccccccccCCCcccc
Q 039650 350 HIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELG 384 (391)
Q Consensus 350 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 384 (391)
++.+.++..+.++++|++|++++|++ +.+|..+.
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred cccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 67777888888899999999999988 47776544
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-40 Score=318.62 Aligned_cols=377 Identities=23% Similarity=0.217 Sum_probs=206.4
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|++++|++++..+..|.++++|++|++++|.+.+..|.+|..+++|++|++++|.+.+..|..+.++++|++|++++|.+
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 67777777777777777888888888888777766677777788888888887777755677777777888888887777
Q ss_pred CCCCcccccCCCCCceEEeccccccc-ccchhhcccccchhhhhce-----------------------eeecccccccc
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSG-LIPDEIRNLEFLSDLIYNY-----------------------LIYWINALSDL 137 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~l~~-----------------------~~~~~~~~~~~ 137 (391)
.+..+..+..+++|++|++++|.+.. ..|..+.++++|+.|.+.. +.+..+.+...
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~ 196 (606)
T 3vq2_A 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196 (606)
T ss_dssp CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEE
T ss_pred ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCccee
Confidence 75555667777777777777777765 3466777777777553332 22223333333
Q ss_pred ccccccCCCCCCEEECCCCCCC----------------------------------------------------------
Q 039650 138 IPNEIGNLKSLSDLRLDYNTLS---------------------------------------------------------- 159 (391)
Q Consensus 138 ~~~~~~~~~~L~~L~l~~~~~~---------------------------------------------------------- 159 (391)
.+..+.. .+|+.|+++++.+.
T Consensus 197 ~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~ 275 (606)
T 3vq2_A 197 QDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275 (606)
T ss_dssp CTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC
T ss_pred CcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccc
Confidence 2333322 24555555444321
Q ss_pred ----------------------CCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCC
Q 039650 160 ----------------------GSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNL 217 (391)
Q Consensus 160 ----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 217 (391)
...+ .+..+++|+.|++.+|.+. ..+ .+ .+++|+.|++++|.... ...+..+
T Consensus 276 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~--~~~~~~l 349 (606)
T 3vq2_A 276 DDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSI--SFKKVAL 349 (606)
T ss_dssp GGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCE--ECCCCCC
T ss_pred ccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCcc--chhhccC
Confidence 0011 2333344555555555442 222 11 33444444444432211 1123334
Q ss_pred CcccEEEccCcccccc-------------------------cchhhccCCCCCEEEcCCCcccCccC-ccccCCCCccEE
Q 039650 218 TNLTTLYFSMNALSGS-------------------------IPNEITNLRSLSDLQLSENTLNGSIP-LALGNLTKLVVL 271 (391)
Q Consensus 218 ~~L~~L~l~~~~~~~~-------------------------~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l 271 (391)
++|+.|++++|.+... .+..+..+++|+.|++++|.+.+..+ ..+..+++|+++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 4455555554443322 22333444444444444444443333 344455555555
Q ss_pred EccCCccccccccccccCCcccEEEcCCCccCc-hhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCc
Q 039650 272 YLSINKLSGSISLSYASLTSLTNLYLYENSLCD-SIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNH 350 (391)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~ 350 (391)
++++|.+.+..+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|++++..+..+..+. +|++|++++|+
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~ 508 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-RLQLLNMSHNN 508 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc-cCCEEECCCCc
Confidence 555555544444445555555555555555543 2344455556666666666655554444444443 56666666666
Q ss_pred ccCCCcccccCCccccEEEccccccccCCCccccccC
Q 039650 351 IVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSLI 387 (391)
Q Consensus 351 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 387 (391)
+++..+..+..+++|++|++++|++. .+|..+..++
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred CCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 65555555666666666666666655 4554454443
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-40 Score=312.20 Aligned_cols=381 Identities=21% Similarity=0.181 Sum_probs=245.2
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
+|++++|++++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence 37888999988888889999999999999998887778889999999999999998876666788889999999999988
Q ss_pred cCCCCcccccCCCCCceEEecccccccc-cchhhcccccchhhhhceeeeccccccccccccccCCCCC----CEEECCC
Q 039650 81 LKGSIPSSLGNLTNLVNLHLHINALSGL-IPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSL----SDLRLDY 155 (391)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L----~~L~l~~ 155 (391)
+....+..+..+++|++|++++|.+... .|..++++++|+.|. +..+.+....+..++.+++| +.+++++
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~-----l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD-----LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE-----CTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe-----CcCCccceecHHHccchhccchhhhhcccCC
Confidence 8865555688889999999999888764 478888888888544 33444444444445545555 5555555
Q ss_pred CCCCCCC-------------------------------------------------------------------------
Q 039650 156 NTLSGSI------------------------------------------------------------------------- 162 (391)
Q Consensus 156 ~~~~~~~------------------------------------------------------------------------- 162 (391)
+.+....
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 5443222
Q ss_pred --------CCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCcccc-------------------cc
Q 039650 163 --------PYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLS-------------------LG 215 (391)
Q Consensus 163 --------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------------------~~ 215 (391)
+..+..+++|+.+++.++.+. ..+..+..+ +|+.|++++|.+....... ..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccc
Confidence 233444566777777776665 334444444 4555555544443110000 03
Q ss_pred CCCcccEEEccCccccccc--chhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccc-cccccCCcc
Q 039650 216 NLTNLTTLYFSMNALSGSI--PNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSIS-LSYASLTSL 292 (391)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L 292 (391)
.+++|+.|++++|.+.... +..+..+++|+.|++++|.+.+..+. +..+++|+++++++|.+.+..+ ..+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 4556666666666554322 44555666666666666665533332 5566666666666666654332 345556666
Q ss_pred cEEEcCCCccCchhhHhhhCCCCccEEEcCCCccc-chhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEcc
Q 039650 293 TNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN-GSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILT 371 (391)
Q Consensus 293 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 371 (391)
+.|++++|.+....+..+..+++|+.|++++|.++ +..|..+..+. +|+.|++++|++++..+..+.++++|++|+++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc-CCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 66666666665555555666666666666666665 23444444443 66666666666665556666666666666666
Q ss_pred ccccccCCCccccccCCCc
Q 039650 372 NNELSGQLSPELGSLIQLE 390 (391)
Q Consensus 372 ~~~~~~~~~~~~~~~~~L~ 390 (391)
+|++.+..|..+..+++|+
T Consensus 503 ~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCC
T ss_pred CCcCCCCCHHHhhcccCCc
Confidence 6666655555555555554
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-38 Score=306.13 Aligned_cols=119 Identities=24% Similarity=0.260 Sum_probs=60.0
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|++++|++++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 45555555555555555555555555555555544455555555555555555554422222344555555555555555
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccch
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLS 120 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 120 (391)
.+..+..+..+++|++|++++|.+....+..+.++++|+
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred CccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 444444455555555555555554444444444444444
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-38 Score=308.14 Aligned_cols=384 Identities=24% Similarity=0.190 Sum_probs=275.4
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
+|++++|.+++..+..|.++++|++|++++|.+.+..+.+|..+++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132 (680)
T ss_dssp EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc
Confidence 37888899998888889999999999999998886666679999999999999998876666778889999999999998
Q ss_pred cCCCCcccccCCCCCceEEecccccccccchhhc--ccccchhhhhceeeeccccccccccccccCC-------------
Q 039650 81 LKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIR--NLEFLSDLIYNYLIYWINALSDLIPNEIGNL------------- 145 (391)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~------------- 145 (391)
+.+..+..+..+++|++|++++|.+....+..+. .+.+|+.| .+..+.+....+..+..+
T Consensus 133 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L-----~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL-----ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE-----ECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE-----ECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 8877788888899999999999988877766654 34677744 444455555444444332
Q ss_pred --------------CCCCEEECCCCCCCCCCCCCcCCCCC--ccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCC
Q 039650 146 --------------KSLSDLRLDYNTLSGSIPYSFGNLTK--LVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGS 209 (391)
Q Consensus 146 --------------~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 209 (391)
++|+.|+++++.+.+..+..+..++. |+.|++++|.+....+..+..+++|+.|++++|.+...
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 56777888888777666667776654 99999999988866667788889999999999988766
Q ss_pred ccccccCCCcccEEEccCcccc---------cccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccc-
Q 039650 210 IPLSLGNLTNLTTLYFSMNALS---------GSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLS- 279 (391)
Q Consensus 210 ~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~- 279 (391)
.+..+..+++|+.+++.++... ......+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+.
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence 6777888899999999876432 112236678899999999999988777777888888888888776532
Q ss_pred ---------------------------cccccccccCCcccEEEcCCCccCc-hhhHhhhCCCCccEEEcCCCcccchhH
Q 039650 280 ---------------------------GSISLSYASLTSLTNLYLYENSLCD-SIQKEIGDMKSLSILDLSSNKLNGSIL 331 (391)
Q Consensus 280 ---------------------------~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~ 331 (391)
+..+..+..+++|+.|++++|.+.. .....+..+++|+.|++++|++.+..+
T Consensus 368 ~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred hhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh
Confidence 1122233344455555555555432 122344455555555555555544333
Q ss_pred HHHHHhhccccEEEcCCCccc--CCCcccccCCccccEEEccccccccCCCccccccCCCc
Q 039650 332 LSLANLTNSLKVLYLSSNHIV--GEIPLGHGKFSSLIQLILTNNELSGQLSPELGSLIQLE 390 (391)
Q Consensus 332 ~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 390 (391)
..+..++ +|+.|++++|.+. +..+..+..+++|+.|++++|.+.+..|..++.+++|+
T Consensus 448 ~~~~~~~-~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 507 (680)
T 1ziw_A 448 NSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507 (680)
T ss_dssp TTTTTCT-TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhhhcCc-ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccC
Confidence 4443333 5666666666554 23566777788888888888888755566677777765
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-39 Score=307.29 Aligned_cols=375 Identities=24% Similarity=0.196 Sum_probs=297.9
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
+|++++|++++..+..|.++++|++|++++|.+.+..|+.|..+++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred EEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc
Confidence 47899999998889999999999999999999988889999999999999999999886665778999999999999999
Q ss_pred cCC-CCcccccCCCCCceEEecccccccccchhhcccccchh----h------------------hhceeeecccccc--
Q 039650 81 LKG-SIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSD----L------------------IYNYLIYWINALS-- 135 (391)
Q Consensus 81 ~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~----l------------------~l~~~~~~~~~~~-- 135 (391)
+.+ .+|..+.++++|++|++++|.+....+..+..+.+++. + .+..+.+..+.+.
T Consensus 140 l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~ 219 (606)
T 3vq2_A 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN 219 (606)
T ss_dssp CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHH
T ss_pred ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchh
Confidence 885 56899999999999999999998877776666555431 1 1122222222110
Q ss_pred --------------------------------------------------------c----------------------c
Q 039650 136 --------------------------------------------------------D----------------------L 137 (391)
Q Consensus 136 --------------------------------------------------------~----------------------~ 137 (391)
. .
T Consensus 220 ~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 299 (606)
T 3vq2_A 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299 (606)
T ss_dssp HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC
T ss_pred HHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh
Confidence 0 0
Q ss_pred ccccccCCCCCCEEECCCCCCCCCCCC--------------------CcCCCCCccEEEcCCCcCCCC--CCccccCCCc
Q 039650 138 IPNEIGNLKSLSDLRLDYNTLSGSIPY--------------------SFGNLTKLVTLYLDTNALSGS--IPDEIRNLKS 195 (391)
Q Consensus 138 ~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~ 195 (391)
++ .+..+++|+.|++++|.+. .++. .+..+++|+.|++.+|.+... .+..+..+++
T Consensus 300 l~-~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 300 LE-DVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp CC-CCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred hh-hccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence 11 3455567777777777763 3332 222344555555555554422 1445566777
Q ss_pred ccEEEccCCCCCCCccccccCCCcccEEEccCcccccccc-hhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEcc
Q 039650 196 LFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIP-NEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLS 274 (391)
Q Consensus 196 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 274 (391)
|+.|++++|.+. ..+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 378 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 888888777765 344667788999999999998876655 678899999999999999987788889999999999999
Q ss_pred CCcccc-ccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccC
Q 039650 275 INKLSG-SISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVG 353 (391)
Q Consensus 275 ~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~ 353 (391)
+|.+.+ ..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++++..+..+..+. +|+.|++++|+++
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~- 534 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-SLSTLDCSFNRIE- 534 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT-TCCEEECTTSCCC-
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC-cCCEEECCCCcCc-
Confidence 999986 4677888999999999999999888888899999999999999999988788887776 9999999999998
Q ss_pred CCcccccCCc-cccEEEccccccccCCC
Q 039650 354 EIPLGHGKFS-SLIQLILTNNELSGQLS 380 (391)
Q Consensus 354 ~~~~~~~~~~-~L~~L~l~~~~~~~~~~ 380 (391)
.++..+..++ +|++|++++|++.+.-+
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 6777788887 69999999999886443
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-39 Score=303.90 Aligned_cols=377 Identities=23% Similarity=0.208 Sum_probs=299.1
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
+|++++|++++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 135 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc
Confidence 47899999998888899999999999999999987788899999999999999998874444468889999999999999
Q ss_pred cCC-CCcccccCCCCCceEEecccccccccchhhcccccc----hhhhh------------------ceeeeccc-----
Q 039650 81 LKG-SIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFL----SDLIY------------------NYLIYWIN----- 132 (391)
Q Consensus 81 ~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~l~l------------------~~~~~~~~----- 132 (391)
+.+ .+|..+.++++|++|++++|.+....+..+..+.+| +.+.+ ..+.+..+
T Consensus 136 l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 215 (570)
T 2z63_A 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 215 (570)
T ss_dssp CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTT
T ss_pred cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccccccc
Confidence 886 468899999999999999998887766666666555 22211 11111110
Q ss_pred -----------------------------------------------------cccccccccccCCCCCCEEECCCCCCC
Q 039650 133 -----------------------------------------------------ALSDLIPNEIGNLKSLSDLRLDYNTLS 159 (391)
Q Consensus 133 -----------------------------------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~ 159 (391)
.+....+..+..+++|+.|+++++.+.
T Consensus 216 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 295 (570)
T 2z63_A 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295 (570)
T ss_dssp HHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC
T ss_pred chhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch
Confidence 222233455666788888888888766
Q ss_pred CCCCCCcCCCCCccEEEcCCCcCCCCCCcc-------------------ccCCCcccEEEccCCCCCCCc--cccccCCC
Q 039650 160 GSIPYSFGNLTKLVTLYLDTNALSGSIPDE-------------------IRNLKSLFNLQLDNNTLSGSI--PLSLGNLT 218 (391)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~ 218 (391)
..+..+..+ +|++|++.+|.+....... ...+++|+.|++++|.+.... +..+..++
T Consensus 296 -~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 373 (570)
T 2z63_A 296 -RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373 (570)
T ss_dssp -SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCS
T ss_pred -hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccC
Confidence 355555555 6666666666654221111 146788899999988876332 45677899
Q ss_pred cccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccC-ccccCCCCccEEEccCCccccccccccccCCcccEEEc
Q 039650 219 NLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIP-LALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYL 297 (391)
Q Consensus 219 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 297 (391)
+|+.|++++|.+....+. +..+++|+.|++++|.+.+..+ ..+..+++|+++++++|.+.+..+..+..+++|+.|++
T Consensus 374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 999999999988755444 8899999999999999876544 56789999999999999998777888889999999999
Q ss_pred CCCccC-chhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccc
Q 039650 298 YENSLC-DSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELS 376 (391)
Q Consensus 298 ~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 376 (391)
++|.+. ...+..+..+++|+.|++++|++++..+..+..+. +|++|++++|++++..+..+.++++|+.|++++|++.
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc-CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 999986 34567788999999999999999987788887766 9999999999999877888999999999999999999
Q ss_pred cCCCc
Q 039650 377 GQLSP 381 (391)
Q Consensus 377 ~~~~~ 381 (391)
+..|.
T Consensus 532 ~~~~~ 536 (570)
T 2z63_A 532 CSCPR 536 (570)
T ss_dssp CCTTT
T ss_pred CCCcc
Confidence 87664
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.9e-39 Score=310.99 Aligned_cols=369 Identities=24% Similarity=0.297 Sum_probs=277.9
Q ss_pred cccccCccCCCchhhhhcCCcccEEee-cCCcCCCC--------------------------------------------
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSL-YSNFLKGS-------------------------------------------- 36 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~-------------------------------------------- 36 (391)
|+++++++.+..+..+.++++|++|++ ++|.+.+.
T Consensus 328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 688889999888899999999999999 66533211
Q ss_pred --------------------------------CCCCCCCCCCccEEecCCccccc-----------------CChhhhh-
Q 039650 37 --------------------------------IPPSLGNLTSLSYIGISNNLLSG-----------------SIPNEVE- 66 (391)
Q Consensus 37 --------------------------------~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~~- 66 (391)
+|..|.++++|++|++++|.+.+ .+|..+.
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f 487 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence 56778889999999999998886 2777766
Q ss_pred -cCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccc-ccc-ccchhhcccc-------cchhhhhceeeeccccccc
Q 039650 67 -SLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINA-LSG-LIPDEIRNLE-------FLSDLIYNYLIYWINALSD 136 (391)
Q Consensus 67 -~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~l~l~~~~~~~~~~~~ 136 (391)
++++|++|++++|.+.+.+|..+..+++|++|++++|. +.+ ..|..+.++. +|+ .+.+..+.+.
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-----~L~Ls~N~L~- 561 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-----IFYMGYNNLE- 561 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-----EEECCSSCCC-
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc-----EEEeeCCcCC-
Confidence 89999999999998888888889999999999999997 776 5677666665 666 5555566666
Q ss_pred cccc--cccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCc-ccEEEccCCCCCCCcccc
Q 039650 137 LIPN--EIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKS-LFNLQLDNNTLSGSIPLS 213 (391)
Q Consensus 137 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~ 213 (391)
.++. .++++++|+.|++++|.+. .+| .+..+++|+.|++.+|.+. ..+..+..+++ |+.|++++|.+. ..+..
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 5566 7888999999999999887 566 7888899999999999888 66667888888 999999999887 55655
Q ss_pred ccCCC--cccEEEccCcccccccchh---hc--cCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccccccc
Q 039650 214 LGNLT--NLTTLYFSMNALSGSIPNE---IT--NLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSY 286 (391)
Q Consensus 214 ~~~~~--~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 286 (391)
+...+ +|+.|++++|.+....+.. +. ..++|+.|++++|.+.......+..+++|+.|++++|.+.......+
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 717 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHh
Confidence 55544 4888888888776433321 12 33578888888888874444444577888888888888774333333
Q ss_pred c-------cCCcccEEEcCCCccCchhhHhhh--CCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCC------Ccc
Q 039650 287 A-------SLTSLTNLYLYENSLCDSIQKEIG--DMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSS------NHI 351 (391)
Q Consensus 287 ~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~------~~~ 351 (391)
. .+++|+.|++++|.+.. .+..+. .+++|+.|++++|.+++ +|..+..+. +|+.|++++ |.+
T Consensus 718 ~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 718 KPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCCBCTTCCBC
T ss_pred ccccccccccCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCCCCcccccc
Confidence 2 22378888888888864 344444 77888888888888875 566666554 788888865 666
Q ss_pred cCCCcccccCCccccEEEccccccccCCCcccc
Q 039650 352 VGEIPLGHGKFSSLIQLILTNNELSGQLSPELG 384 (391)
Q Consensus 352 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 384 (391)
.+.+|..+.++++|+.|++++|++ +.+|..+.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 667788888888888888888888 47776544
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9e-39 Score=314.88 Aligned_cols=279 Identities=22% Similarity=0.204 Sum_probs=183.9
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCC-CCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCC
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKG-SIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNN 79 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 79 (391)
+|++++|.+++..+..|.++++|++|++++|...+ ..|..|.++++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 37888888887777888888888888888884433 44777888888888888888877666777888888888888888
Q ss_pred ccCCCCccc--ccCCCCCceEEecccccccccc-hhhcccccchhhhhce---------------------eeecccccc
Q 039650 80 TLKGSIPSS--LGNLTNLVNLHLHINALSGLIP-DEIRNLEFLSDLIYNY---------------------LIYWINALS 135 (391)
Q Consensus 80 ~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~---------------------~~~~~~~~~ 135 (391)
.+.+..+.. +..+++|++|++++|.+....+ ..++++++|+.|.+.. +.+..+.+.
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 777544443 7778888888888887766543 4677777777443332 111122222
Q ss_pred ccccccccCCCC------CCEEECCCCCCCCCCCCCcC------------------------------------C--CCC
Q 039650 136 DLIPNEIGNLKS------LSDLRLDYNTLSGSIPYSFG------------------------------------N--LTK 171 (391)
Q Consensus 136 ~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~~~------------------------------------~--~~~ 171 (391)
...+..+..+++ |+.|++++|.+....+..+. . .++
T Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 222222232222 66666666644322221111 1 145
Q ss_pred ccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCC
Q 039650 172 LVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSE 251 (391)
Q Consensus 172 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 251 (391)
|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 66677766666655555666777777777777776655555666777777777777777656666677777777777777
Q ss_pred CcccCccCccccCCCCccEEEccCCccc
Q 039650 252 NTLNGSIPLALGNLTKLVVLYLSINKLS 279 (391)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 279 (391)
|.+....+..+..+++|++|++++|.+.
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 7776555666677777777777777665
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.6e-38 Score=289.95 Aligned_cols=354 Identities=21% Similarity=0.197 Sum_probs=292.1
Q ss_pred CcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccC-ChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEE
Q 039650 21 SSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGS-IPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLH 99 (391)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 99 (391)
++|++|++++|.+.+..|..|..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6899999999999877888899999999999999987533 356688899999999999998877788899999999999
Q ss_pred ecccccccccchh--hcccccchhhhhceeeecccccccccccc-ccCCCCCCEEECCCCCCCCCCCCCcCCC--CCccE
Q 039650 100 LHINALSGLIPDE--IRNLEFLSDLIYNYLIYWINALSDLIPNE-IGNLKSLSDLRLDYNTLSGSIPYSFGNL--TKLVT 174 (391)
Q Consensus 100 l~~~~~~~~~~~~--~~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~ 174 (391)
+++|.+.+..+.. +..+++|+ .+.+..+.+....+.. +.++++|+.|++++|.+....+..+..+ .+++.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~-----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLE-----MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCC-----EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCCCCCCccccCcccccCcccCC-----EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 9999987644443 78888888 5555567777766654 7889999999999999887777777665 68999
Q ss_pred EEcCCCcCCCCCCcc--------ccCCCcccEEEccCCCCCCCccccccC---CCcccEEEccCccccc----------c
Q 039650 175 LYLDTNALSGSIPDE--------IRNLKSLFNLQLDNNTLSGSIPLSLGN---LTNLTTLYFSMNALSG----------S 233 (391)
Q Consensus 175 L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~----------~ 233 (391)
+++.++.+....+.. +..+++|+.|++++|.+....+..+.. .++++.++++++.... .
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 999999887544332 335688999999999887554444433 3789999998874331 1
Q ss_pred cchhhc--cCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhh
Q 039650 234 IPNEIT--NLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIG 311 (391)
Q Consensus 234 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 311 (391)
....+. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+.
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence 112222 236899999999999878888899999999999999999987788889999999999999999888788899
Q ss_pred CCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccccCCC
Q 039650 312 DMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLS 380 (391)
Q Consensus 312 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 380 (391)
.+++|+.|++++|++++..+..+..+. +|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcccCCEEECCCCcccccChhhccccc-cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999987787887766 99999999999997667778899999999999999998776
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-38 Score=302.66 Aligned_cols=356 Identities=19% Similarity=0.238 Sum_probs=302.0
Q ss_pred cCccCCCchhhhhcCCcccEEeecCCcCCCC-----------------CCCCCC--CCCCccEEecCCcccccCChhhhh
Q 039650 6 KNQLSGLIPHEIGRLSSFNGLSLYSNFLKGS-----------------IPPSLG--NLTSLSYIGISNNLLSGSIPNEVE 66 (391)
Q Consensus 6 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~ 66 (391)
+|++++ ++..+.++++|++|++++|.+.+. .|+.+. ++++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 578887 788899999999999999999874 888998 999999999999998889999999
Q ss_pred cCCCCCEEEeeCCc-cCC-CCcccccCC------CCCceEEecccccccccch--hhcccccchhhhhceeeeccccccc
Q 039650 67 SLKSLSDLRLYNNT-LKG-SIPSSLGNL------TNLVNLHLHINALSGLIPD--EIRNLEFLSDLIYNYLIYWINALSD 136 (391)
Q Consensus 67 ~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~ 136 (391)
++++|++|++++|. +++ .+|..+..+ ++|++|++++|.+. ..|. .+.++++|+ .+.+..+.+.+
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~-----~L~L~~N~l~g 344 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG-----MLECLYNQLEG 344 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC-----EEECCSCCCEE
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC-----EEeCcCCcCcc
Confidence 99999999999998 876 678877765 99999999999998 5666 899999999 44555677775
Q ss_pred cccccccCCCCCCEEECCCCCCCCCCCCCcCCCCC-ccEEEcCCCcCCCCCCccccCC--CcccEEEccCCCCCCCcccc
Q 039650 137 LIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTK-LVTLYLDTNALSGSIPDEIRNL--KSLFNLQLDNNTLSGSIPLS 213 (391)
Q Consensus 137 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~ 213 (391)
.++ .++.+++|+.|++++|.+. .+|..+..+++ |+.|++.+|.+. ..+..+... ++|+.|++++|.+....+..
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred chh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 666 8888999999999999988 67778888999 999999999998 566666654 48999999999998766666
Q ss_pred cc-------CCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCC-------CCccEEEccCCccc
Q 039650 214 LG-------NLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNL-------TKLVVLYLSINKLS 279 (391)
Q Consensus 214 ~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~l~l~~~~~~ 279 (391)
+. .+++|+.|++++|.++......+..+++|+.|++++|.+.......+... ++|++|++++|.+.
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 76 67899999999999986666667778999999999999984444444333 39999999999998
Q ss_pred cccccccc--cCCcccEEEcCCCccCchhhHhhhCCCCccEEEc------CCCcccchhHHHHHHhhccccEEEcCCCcc
Q 039650 280 GSISLSYA--SLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDL------SSNKLNGSILLSLANLTNSLKVLYLSSNHI 351 (391)
Q Consensus 280 ~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~ 351 (391)
..+..+. .+++|+.|++++|.+.. .+..+..+++|+.|++ ++|.+.+..|..+..+. +|++|++++|++
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l 578 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP-SLTQLQIGSNDI 578 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC
T ss_pred -ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC-CCCEEECCCCcC
Confidence 4445554 88999999999999977 5667788999999999 45777878888888766 999999999999
Q ss_pred cCCCcccccCCccccEEEcccccccc
Q 039650 352 VGEIPLGHGKFSSLIQLILTNNELSG 377 (391)
Q Consensus 352 ~~~~~~~~~~~~~L~~L~l~~~~~~~ 377 (391)
+ .+|..+. ++|+.|++++|++..
T Consensus 579 ~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 579 R-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp C-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred C-ccCHhHh--CcCCEEECcCCCCcc
Confidence 5 6777766 899999999998763
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=306.52 Aligned_cols=383 Identities=22% Similarity=0.179 Sum_probs=266.0
Q ss_pred CcccccCccCC-CchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhh--hhcCCCCCEEEee
Q 039650 1 LLSFSKNQLSG-LIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNE--VESLKSLSDLRLY 77 (391)
Q Consensus 1 ~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~ 77 (391)
+|++++|.... +.+..|.++++|++|++++|.+.+..|+.|..+++|++|++++|.+.+..+.. +.++++|++|+++
T Consensus 52 ~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls 131 (844)
T 3j0a_A 52 LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131 (844)
T ss_dssp EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE
T ss_pred EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECC
Confidence 37888885543 44788999999999999999998888999999999999999999887655554 7889999999999
Q ss_pred CCccCCCCc-ccccCCCCCceEEecccccccccchhhccc--ccchhhh-------------------------hceeee
Q 039650 78 NNTLKGSIP-SSLGNLTNLVNLHLHINALSGLIPDEIRNL--EFLSDLI-------------------------YNYLIY 129 (391)
Q Consensus 78 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~l~-------------------------l~~~~~ 129 (391)
+|.+.+..+ ..+..+++|++|++++|.+....+..+..+ .+|+.+. +..+.+
T Consensus 132 ~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L 211 (844)
T 3j0a_A 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211 (844)
T ss_dssp SCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBC
T ss_pred CCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEec
Confidence 999886544 578999999999999998887777666555 4444333 233444
Q ss_pred ccccccccccc------------------------------------cccC--CCCCCEEECCCCCCCCCCCCCcCCCCC
Q 039650 130 WINALSDLIPN------------------------------------EIGN--LKSLSDLRLDYNTLSGSIPYSFGNLTK 171 (391)
Q Consensus 130 ~~~~~~~~~~~------------------------------------~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~ 171 (391)
..+.+....+. .+.. .++|+.|++++|.+....+..+..+++
T Consensus 212 s~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 291 (844)
T 3j0a_A 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291 (844)
T ss_dssp SSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCC
T ss_pred CCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCC
Confidence 44432221111 1222 268999999999988777888999999
Q ss_pred ccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCC
Q 039650 172 LVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSE 251 (391)
Q Consensus 172 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 251 (391)
|+.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 292 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 99999999999877778899999999999999999877778899999999999999999877777888999999999999
Q ss_pred CcccCccC----------------------------------------ccccCCCCccEEEccCCccccccc-cccccCC
Q 039650 252 NTLNGSIP----------------------------------------LALGNLTKLVVLYLSINKLSGSIS-LSYASLT 290 (391)
Q Consensus 252 ~~~~~~~~----------------------------------------~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~ 290 (391)
|.+.+... ..+..+++|+.|++++|.+..... ..+..++
T Consensus 372 N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 451 (844)
T 3j0a_A 372 NALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451 (844)
T ss_dssp CCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred CCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC
Confidence 98763211 001133444444444444432211 1122234
Q ss_pred cccEEEcCCCccCc-----hhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccc
Q 039650 291 SLTNLYLYENSLCD-----SIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSL 365 (391)
Q Consensus 291 ~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 365 (391)
+|+.|++++|.+.. .....+..+++|+.|++++|.+++..+..+..+. +|+.|++++|++++..+..+. ++|
T Consensus 452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~--~~L 528 (844)
T 3j0a_A 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHNDLP--ANL 528 (844)
T ss_dssp TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC-SCSEEEEESCCCSSCCCCCCC--SCC
T ss_pred ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh-hhheeECCCCCCCccChhhhh--ccc
Confidence 44444444444421 1112344556666666666666544444444433 666666666666644444443 566
Q ss_pred cEEEccccccccCCCcccccc
Q 039650 366 IQLILTNNELSGQLSPELGSL 386 (391)
Q Consensus 366 ~~L~l~~~~~~~~~~~~~~~~ 386 (391)
+.|++++|++++..|..+.++
T Consensus 529 ~~L~Ls~N~l~~~~~~~~~~L 549 (844)
T 3j0a_A 529 EILDISRNQLLAPNPDVFVSL 549 (844)
T ss_dssp CEEEEEEECCCCCCSCCCSSC
T ss_pred cEEECCCCcCCCCChhHhCCc
Confidence 666666666665555554433
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-37 Score=291.80 Aligned_cols=363 Identities=23% Similarity=0.200 Sum_probs=223.7
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
+|++++|++++..+..|.++++|++|++++|.+.+..+++|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 47899999998888889999999999999999988888899999999999999999987777778999999999999998
Q ss_pred cCC-CCcccccCCCCCceEEecccc-cccccchhhcccccchhhhhceeeecccccccccccccc---------------
Q 039650 81 LKG-SIPSSLGNLTNLVNLHLHINA-LSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIG--------------- 143 (391)
Q Consensus 81 ~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~--------------- 143 (391)
+.+ ..+..+..+++|++|++++|. +....+..+..+++|+.|.+. .+.+....+..++
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK-----ALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-----ETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc-----CCcccccChhhhhccccCceEecccCcc
Confidence 875 346678899999999999887 444445678888888855443 3444443343333
Q ss_pred ---------CCCCCCEEECCCCCCCCCC--C-CCcCCCCC----------------------------------------
Q 039650 144 ---------NLKSLSDLRLDYNTLSGSI--P-YSFGNLTK---------------------------------------- 171 (391)
Q Consensus 144 ---------~~~~L~~L~l~~~~~~~~~--~-~~~~~~~~---------------------------------------- 171 (391)
.+++|+.|++++|.+.+.. + .....+++
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 3566777777766655321 0 00111122
Q ss_pred -----------------------------------------------ccEEEcCCCcCCCCCCccc-cCCCcccEEEccC
Q 039650 172 -----------------------------------------------LVTLYLDTNALSGSIPDEI-RNLKSLFNLQLDN 203 (391)
Q Consensus 172 -----------------------------------------------L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~ 203 (391)
|+.+++.+|.+. ..+..+ ..+++|+.|++++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence 222222222222 111111 2345555555555
Q ss_pred CCCCCCc---cccccCCCcccEEEccCcccccccc--hhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcc
Q 039650 204 NTLSGSI---PLSLGNLTNLTTLYFSMNALSGSIP--NEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKL 278 (391)
Q Consensus 204 ~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 278 (391)
|.+.... ...+..+++|+.|++++|.++.... ..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 5544222 1123445555555555555443211 23455555555555555554 3344445555566666665555
Q ss_pred ccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCccc
Q 039650 279 SGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLG 358 (391)
Q Consensus 279 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 358 (391)
...... ..++|+.|++++|.+... ...+++|+.|++++|+++ .+|. .. ..++|+.|++++|++++..+..
T Consensus 423 ~~l~~~---~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~-~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 423 RVVKTC---IPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-AS-LFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp SCCCTT---SCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GG-GCTTCCEEECCSSCCCCCCTTG
T ss_pred ccccch---hcCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cc-cCccCCEEecCCCccCCcCHHH
Confidence 422111 124566666666655432 135667777777777766 3333 22 2336777777777777656666
Q ss_pred ccCCccccEEEccccccccCCC
Q 039650 359 HGKFSSLIQLILTNNELSGQLS 380 (391)
Q Consensus 359 ~~~~~~L~~L~l~~~~~~~~~~ 380 (391)
+..+++|+.|++++|++.+..|
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHH
T ss_pred HhcCcccCEEEecCCCccCCCc
Confidence 6777777777777777665444
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.7e-37 Score=287.82 Aligned_cols=102 Identities=26% Similarity=0.275 Sum_probs=55.5
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|++++|++++..+..|.++++|++|++++|.+.+..|+.|..+++|++|++++|.+. .+|.. .+++|++|++++|.+
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAF 102 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCcc
Confidence 455555555555555555555555555555555444555555555555555555554 33333 455555555555555
Q ss_pred CC-CCcccccCCCCCceEEecccccc
Q 039650 82 KG-SIPSSLGNLTNLVNLHLHINALS 106 (391)
Q Consensus 82 ~~-~~~~~~~~l~~L~~L~l~~~~~~ 106 (391)
++ ..|..+..+++|++|++++|.+.
T Consensus 103 ~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 103 DALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred ccccchhhhccCCcceEEEecCcccc
Confidence 53 23455555555555555555554
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.7e-37 Score=297.11 Aligned_cols=357 Identities=20% Similarity=0.234 Sum_probs=293.7
Q ss_pred cCccCCCchhhhhcCCcccEEeecCCcCCC-----------------CCCCCCC--CCCCccEEecCCcccccCChhhhh
Q 039650 6 KNQLSGLIPHEIGRLSSFNGLSLYSNFLKG-----------------SIPPSLG--NLTSLSYIGISNNLLSGSIPNEVE 66 (391)
Q Consensus 6 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~ 66 (391)
+|++++ ++..|.++++|++|++++|.+.+ ..|+.+. .+++|++|++++|.+.+.+|..+.
T Consensus 434 ~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 467776 77889999999999999999987 2788887 999999999999998889999999
Q ss_pred cCCCCCEEEeeCCc-cCC-CCcccccCC-------CCCceEEecccccccccch--hhcccccchhhhhceeeecccccc
Q 039650 67 SLKSLSDLRLYNNT-LKG-SIPSSLGNL-------TNLVNLHLHINALSGLIPD--EIRNLEFLSDLIYNYLIYWINALS 135 (391)
Q Consensus 67 ~~~~L~~L~l~~~~-~~~-~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~ 135 (391)
++++|++|++++|. +++ .+|..+..+ ++|++|++++|.+. ..|. .+.++++|+ .+.+..+.+.
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~-----~L~Ls~N~l~ 586 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG-----LLDCVHNKVR 586 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC-----EEECTTSCCC
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC-----EEECCCCCcc
Confidence 99999999999998 776 577665554 59999999999999 5566 899999999 4455556666
Q ss_pred ccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCC-ccEEEcCCCcCCCCCCccccCCC--cccEEEccCCCCCCCccc
Q 039650 136 DLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTK-LVTLYLDTNALSGSIPDEIRNLK--SLFNLQLDNNTLSGSIPL 212 (391)
Q Consensus 136 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~ 212 (391)
.++ .++++++|+.|++++|.+. .+|..+..+++ |+.|++.+|.+. ..+..+...+ +|+.|++++|.+....+.
T Consensus 587 -~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 587 -HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp -BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred -cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 455 8899999999999999998 77778888998 999999999998 5666666654 499999999998754332
Q ss_pred ---ccc--CCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCcccc-------CCCCccEEEccCCcccc
Q 039650 213 ---SLG--NLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALG-------NLTKLVVLYLSINKLSG 280 (391)
Q Consensus 213 ---~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~l~l~~~~~~~ 280 (391)
.+. ..++|+.|++++|.+.......+..+++|+.|++++|.+.......+. ++++|+.|++++|.+.
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~- 741 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT- 741 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-
Confidence 122 345899999999999855555556889999999999998844433333 2349999999999998
Q ss_pred ccccccc--cCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCC------CcccchhHHHHHHhhccccEEEcCCCccc
Q 039650 281 SISLSYA--SLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSS------NKLNGSILLSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 281 ~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~i~~~~~~~~~~~~~~L~~L~l~~~~~~ 352 (391)
..+..+. .+++|+.|++++|.+.. .+..+..+++|+.|++++ |.+.+..|..+..+. +|+.|++++|++.
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~-~L~~L~Ls~N~L~ 819 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP-SLIQLQIGSNDIR 819 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCCC
T ss_pred cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC-CCCEEECCCCCCC
Confidence 4455554 88999999999999977 566677999999999976 778878888888766 9999999999994
Q ss_pred CCCcccccCCccccEEEccccccccCC
Q 039650 353 GEIPLGHGKFSSLIQLILTNNELSGQL 379 (391)
Q Consensus 353 ~~~~~~~~~~~~L~~L~l~~~~~~~~~ 379 (391)
.+|..+. ++|+.|++++|++...-
T Consensus 820 -~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 820 -KVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp -BCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred -ccCHhhc--CCCCEEECCCCCCCccC
Confidence 7887765 69999999999987433
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.7e-37 Score=286.03 Aligned_cols=355 Identities=24% Similarity=0.261 Sum_probs=212.8
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
+|++++|+++++. ..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 4 ~l~ls~n~l~~ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIHVP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSSCC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCccccc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 4789999999544 4443 899999999999987777889999999999999999987778889999999999999999
Q ss_pred cCCCCcccccCCCCCceEEecccccccc-cchhhcccccchhhhhceeeeccccccccccccccCCCCC--CEEECCCCC
Q 039650 81 LKGSIPSSLGNLTNLVNLHLHINALSGL-IPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSL--SDLRLDYNT 157 (391)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~ 157 (391)
++ .+|.. .+++|++|++++|.+... .|..++++++|+.|.+. .+.+.. ..+..+++| +.|++++|.
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~-----~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS-----TTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEE-----ESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEec-----Ccccch---hhccccccceeeEEEeeccc
Confidence 88 45555 889999999999999874 57889999999855443 344433 344555666 777777766
Q ss_pred C--CCCCCCCcCCC------------------------------------------------------------------
Q 039650 158 L--SGSIPYSFGNL------------------------------------------------------------------ 169 (391)
Q Consensus 158 ~--~~~~~~~~~~~------------------------------------------------------------------ 169 (391)
+ ....+..+..+
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccc
Confidence 5 33333333221
Q ss_pred -----------------CCccEEEcCCCcCCCCCCccc-----cCCCcccEEEccCCCCCCCcc-ccc------------
Q 039650 170 -----------------TKLVTLYLDTNALSGSIPDEI-----RNLKSLFNLQLDNNTLSGSIP-LSL------------ 214 (391)
Q Consensus 170 -----------------~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~~------------ 214 (391)
++|+.|++.+|.+.+..+..+ ..+++|+.++++.+.+ ..+ ..+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 156666666666554455555 5666666666666655 111 111
Q ss_pred -------------cCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccC--ccCccccCCCCccEEEccCCccc
Q 039650 215 -------------GNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNG--SIPLALGNLTKLVVLYLSINKLS 279 (391)
Q Consensus 215 -------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~ 279 (391)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ ..+..+..+++|++|++++|.+.
T Consensus 308 ~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp EEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred EcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 334455555555554444344444445555555555554442 12233444555555555555544
Q ss_pred c-ccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcc-
Q 039650 280 G-SISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPL- 357 (391)
Q Consensus 280 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~- 357 (391)
+ .....+..+++|+.|++++|.+....+..+. ++|+.|++++|+++ .+|..+..+. +|++|++++|++++ ++.
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~-~L~~L~L~~N~l~~-l~~~ 462 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE-ALQELNVASNQLKS-VPDG 462 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT-TCCEEECCSSCCCC-CCTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC-CCCEEECCCCcCCc-cCHH
Confidence 3 2222234445555555555554332222211 45555555555554 3333333322 55555555555552 222
Q ss_pred cccCCccccEEEccccccc
Q 039650 358 GHGKFSSLIQLILTNNELS 376 (391)
Q Consensus 358 ~~~~~~~L~~L~l~~~~~~ 376 (391)
.+..+++|++|++++|++.
T Consensus 463 ~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TTTTCTTCCEEECCSSCBC
T ss_pred HhccCCcccEEECcCCCCc
Confidence 2445555555555555544
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.1e-35 Score=271.29 Aligned_cols=339 Identities=30% Similarity=0.416 Sum_probs=279.3
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|+++++.+.... .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. +.++++|++|++++|.+
T Consensus 51 L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l 124 (466)
T 1o6v_A 51 LQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQI 124 (466)
T ss_dssp EECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred EecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCC
Confidence 677888887643 37889999999999999875443 89999999999999988744 33 88999999999999998
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS 161 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (391)
.+. +. +..+++|++|++++|.+.... .+..+++|+.+.+. +..... ..+.++++|+.|++++|.+...
T Consensus 125 ~~~-~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~------~~~~~~--~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 125 TDI-DP-LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG------NQVTDL--KPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CCC-GG-GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE------ESCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred CCC-hH-HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC------CcccCc--hhhccCCCCCEEECcCCcCCCC
Confidence 854 33 889999999999999887642 47888888866542 233322 2388899999999999998744
Q ss_pred CCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccC
Q 039650 162 IPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNL 241 (391)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (391)
..+..+++|+.|++.+|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 264 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 264 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcC
Confidence 357889999999999999875443 77889999999999988743 457789999999999998875443 7889
Q ss_pred CCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEc
Q 039650 242 RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDL 321 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 321 (391)
++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 999999999999885444 7889999999999999986544 6788999999999999976554 678999999999
Q ss_pred CCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEcccccccc
Q 039650 322 SSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSG 377 (391)
Q Consensus 322 ~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 377 (391)
++|++++. ..+..+. +|+.|++++|++++..+ +..+++|+.|++++|++++
T Consensus 339 ~~n~l~~~--~~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLT-NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC--GGGTTCT-TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc--hhhccCC-CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999864 3455554 99999999999997665 8899999999999999885
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-36 Score=280.70 Aligned_cols=350 Identities=23% Similarity=0.215 Sum_probs=291.0
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCC-CCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCC
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKG-SIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNN 79 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 79 (391)
+|++++|.+++..+..|.++++|++|++++|.+.+ ..+..|..+++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence 47899999998889999999999999999998864 55778999999999999999998777888999999999999999
Q ss_pred ccCCCCccc--ccCCCCCceEEecccccccccchh-hcccccchhhhhceeeeccccccccccccccCC--CCCCEEECC
Q 039650 80 TLKGSIPSS--LGNLTNLVNLHLHINALSGLIPDE-IRNLEFLSDLIYNYLIYWINALSDLIPNEIGNL--KSLSDLRLD 154 (391)
Q Consensus 80 ~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~ 154 (391)
.+.+..+.. +..+++|++|++++|.+....+.. +.++++|+ .+.+..+.+....+..+..+ .+++.++++
T Consensus 114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~-----~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH-----VLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC-----EEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc-----EEeCCCCcccccChhhhhccccccccccccc
Confidence 988644444 889999999999999999887765 78899998 55556677777777777665 689999999
Q ss_pred CCCCCCCCCCC--------cCCCCCccEEEcCCCcCCCCCCccccC---CCcccEEEccCCCCCCCc----------ccc
Q 039650 155 YNTLSGSIPYS--------FGNLTKLVTLYLDTNALSGSIPDEIRN---LKSLFNLQLDNNTLSGSI----------PLS 213 (391)
Q Consensus 155 ~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~----------~~~ 213 (391)
++.+....+.. +..+++|+.|++++|.+....+..+.. .++++.++++++...... ...
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 99887554433 335689999999999987555554433 388999999988543211 111
Q ss_pred cc--CCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCc
Q 039650 214 LG--NLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTS 291 (391)
Q Consensus 214 ~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 291 (391)
+. ..++|+.+++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 11 2368999999999998888888999999999999999998777888999999999999999998777888899999
Q ss_pred ccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCc
Q 039650 292 LTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIP 356 (391)
Q Consensus 292 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 356 (391)
|+.|++++|.+....+..+..+++|+.|++++|++++..+..+..+. +|++|++++|++....+
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC-cccEEEccCCCcccCCC
Confidence 99999999999887788899999999999999999865555555555 99999999999986654
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-36 Score=285.91 Aligned_cols=376 Identities=20% Similarity=0.192 Sum_probs=236.7
Q ss_pred ccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccC
Q 039650 3 SFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLK 82 (391)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 82 (391)
+.++++++.+.. .+ .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 11 ~~~~~~l~~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 11 DGRSRSFTSIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp ECTTSCCSSCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccccccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 455666774444 22 279999999999998888889999999999999999998777788999999999999999999
Q ss_pred CCCcccccCCCCCceEEecccccccc-cchhhcccccchhhhhceeeecccc-ccccccccccCCCCCCEEECCCCCCCC
Q 039650 83 GSIPSSLGNLTNLVNLHLHINALSGL-IPDEIRNLEFLSDLIYNYLIYWINA-LSDLIPNEIGNLKSLSDLRLDYNTLSG 160 (391)
Q Consensus 83 ~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~ 160 (391)
+..+..+..+++|++|++++|.+... .+..+.++++|+.|. +..+. .....+..+.++++|+.|++++|.+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-----L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR-----IGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE-----EEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE-----CCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 87778899999999999999999864 456788899998554 44455 334444678899999999999999887
Q ss_pred CCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCc--c-cc------------------------
Q 039650 161 SIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSI--P-LS------------------------ 213 (391)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~-~~------------------------ 213 (391)
..+..+..+++|+.|++.++.+.......+..+++|+.|++++|.+.... + ..
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 67777777666666666555543221112233444555554444433210 0 00
Q ss_pred ---------------------------------------------------------------ccCCCcccEEEccCccc
Q 039650 214 ---------------------------------------------------------------LGNLTNLTTLYFSMNAL 230 (391)
Q Consensus 214 ---------------------------------------------------------------~~~~~~L~~L~l~~~~~ 230 (391)
+...++|+.+++++|.+
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l 322 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence 00012233333333333
Q ss_pred ccccchhhccCCCCCEEEcCCCcccCcc---CccccCCCCccEEEccCCccccccc--cccccCCcccEEEcCCCccCch
Q 039650 231 SGSIPNEITNLRSLSDLQLSENTLNGSI---PLALGNLTKLVVLYLSINKLSGSIS--LSYASLTSLTNLYLYENSLCDS 305 (391)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~ 305 (391)
.......+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+... ..+..+++|+.|++++|.+..
T Consensus 323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 401 (549)
T 2z81_A 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP- 401 (549)
T ss_dssp CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-
T ss_pred ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-
Confidence 3111112234555666666665554322 1223445555555555555543321 234445555555555555532
Q ss_pred hhHhhhCCCCccEEEcCCCcccchhHHHH-----------------HHhhccccEEEcCCCcccCCCcccccCCccccEE
Q 039650 306 IQKEIGDMKSLSILDLSSNKLNGSILLSL-----------------ANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQL 368 (391)
Q Consensus 306 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-----------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 368 (391)
.+..+..+++|+.|++++|++++ .+..+ ....++|++|++++|+++ .++. ...+++|+.|
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L 478 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVM 478 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEE
T ss_pred CChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEE
Confidence 22233344444444444444431 11110 012347788888888777 4554 4567888888
Q ss_pred EccccccccCCCccccccCCCc
Q 039650 369 ILTNNELSGQLSPELGSLIQLE 390 (391)
Q Consensus 369 ~l~~~~~~~~~~~~~~~~~~L~ 390 (391)
++++|++++..|..+..+++|+
T Consensus 479 ~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 479 KISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp ECCSSCCCCCCTTGGGGCTTCC
T ss_pred ecCCCccCCcCHHHHhcCcccC
Confidence 8888888877777778777775
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.4e-35 Score=277.41 Aligned_cols=102 Identities=29% Similarity=0.289 Sum_probs=52.5
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|++++|.+++..+..|.++++|++|++++|.+.+..|+.|..+++|++|++++|.+. .+|.. .+++|++|++++|.+
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDF 133 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCc
Confidence 445555555555555555555555555555555444555555555555555555544 33333 455555555555555
Q ss_pred CCC-CcccccCCCCCceEEecccccc
Q 039650 82 KGS-IPSSLGNLTNLVNLHLHINALS 106 (391)
Q Consensus 82 ~~~-~~~~~~~l~~L~~L~l~~~~~~ 106 (391)
.+. .|..+..+++|++|++++|.+.
T Consensus 134 ~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 134 DVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred cccCchHhhcccCcccEEecCCCccc
Confidence 431 2345555555555555555544
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.6e-35 Score=277.25 Aligned_cols=357 Identities=23% Similarity=0.273 Sum_probs=236.5
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
++++++++++++. ..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 35 ~l~ls~~~L~~ip-~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 35 MVDYSNRNLTHVP-KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp EEECTTSCCCSCC-TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEEcCCCCCccCC-CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 3688999999644 3333 899999999999998888899999999999999999987778889999999999999999
Q ss_pred cCCCCcccccCCCCCceEEeccccccccc-chhhcccccchhhhhceeeeccccccccccccccCCCCC--CEEECCCCC
Q 039650 81 LKGSIPSSLGNLTNLVNLHLHINALSGLI-PDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSL--SDLRLDYNT 157 (391)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~ 157 (391)
++ .+|.. .+++|++|++++|.+.... +..+.++++|+.|.+. .+.+.. ..+..+++| +.|++++|.
T Consensus 112 l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~-----~n~l~~---~~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 112 LQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS-----AAKFRQ---LDLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEE-----CSBCCT---TTTGGGTTSCEEEEEEEESS
T ss_pred CC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecC-----CCcccc---CchhhhhhceeeEEEeeccc
Confidence 88 55555 8999999999999998753 5889999999955443 444443 234444555 888888776
Q ss_pred C--CCCCCCCcCCC------------------------------------------------------------------
Q 039650 158 L--SGSIPYSFGNL------------------------------------------------------------------ 169 (391)
Q Consensus 158 ~--~~~~~~~~~~~------------------------------------------------------------------ 169 (391)
+ ....+..+..+
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 6 43333333221
Q ss_pred ---------------CCccEEEcCCCcCCCCCCccc-----cCCCc--------------------------ccEEEccC
Q 039650 170 ---------------TKLVTLYLDTNALSGSIPDEI-----RNLKS--------------------------LFNLQLDN 203 (391)
Q Consensus 170 ---------------~~L~~L~l~~~~~~~~~~~~l-----~~~~~--------------------------L~~L~l~~ 203 (391)
++|++|++.+|.+....+..+ ..++. ++.|++++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEES
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccC
Confidence 156677777776654444433 33333 44555555
Q ss_pred CCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCc--cCccccCCCCccEEEccCCcccc-
Q 039650 204 NTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGS--IPLALGNLTKLVVLYLSINKLSG- 280 (391)
Q Consensus 204 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~- 280 (391)
+.+.... ....+++|+.|++++|.+....+..+..+++|+.|++++|.+.+. .+..+..+++|+++++++|.+.+
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 5443111 114556677777777766655566666667777777777766532 23445666777777777776665
Q ss_pred ccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCccc-c
Q 039650 281 SISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLG-H 359 (391)
Q Consensus 281 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 359 (391)
.....+..+++|+.|++++|.+....+..+. ++|+.|++++|+++ .+|..+..+ ++|++|++++|+++ .++.. +
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l-~~L~~L~L~~N~l~-~l~~~~~ 493 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL-QALQELNVASNQLK-SVPDGVF 493 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS-CCCSEEECCSSCCC-CCCTTST
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC-CCCCEEECCCCCCC-CCCHHHH
Confidence 3333455666777777777766543322221 56777777777666 444444433 36777777777766 34443 6
Q ss_pred cCCccccEEEccccccccC
Q 039650 360 GKFSSLIQLILTNNELSGQ 378 (391)
Q Consensus 360 ~~~~~L~~L~l~~~~~~~~ 378 (391)
..+++|+.|++++|++.+.
T Consensus 494 ~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TTCTTCCCEECCSCCBCCC
T ss_pred hcCCCCCEEEecCCCcCCC
Confidence 6677777777777766543
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.4e-33 Score=257.62 Aligned_cols=336 Identities=31% Similarity=0.423 Sum_probs=276.8
Q ss_pred hcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCce
Q 039650 18 GRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVN 97 (391)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 97 (391)
..+++++.|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 456799999999998874 44 48889999999999999874 444 8899999999999999985444 899999999
Q ss_pred EEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEc
Q 039650 98 LHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYL 177 (391)
Q Consensus 98 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 177 (391)
|++++|.+....+ +.++++|+.|.+. .+.+... ..+..+++|+.|++.+ .+.... .+..+++|+.|++
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~-----~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~~--~~~~l~~L~~L~l 184 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELS-----SNTISDI--SALSGLTSLQQLSFGN-QVTDLK--PLANLTTLERLDI 184 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEE-----EEEECCC--GGGTTCTTCSEEEEEE-SCCCCG--GGTTCTTCCEEEC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECC-----CCccCCC--hhhccCCcccEeecCC-cccCch--hhccCCCCCEEEC
Confidence 9999999887644 8888989855544 4444443 2488899999999964 444332 3888999999999
Q ss_pred CCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCc
Q 039650 178 DTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGS 257 (391)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 257 (391)
.+|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+.
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence 99998743 347889999999999999875433 67789999999999988743 4678899999999999998755
Q ss_pred cCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHh
Q 039650 258 IPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANL 337 (391)
Q Consensus 258 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 337 (391)
.+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+....+ +..+++|+.|++++|++++..+ +..+
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccC
Confidence 44 7899999999999999986544 7789999999999999976544 7889999999999999987655 4444
Q ss_pred hccccEEEcCCCcccCCCcccccCCccccEEEccccccccCCCccccccCCCc
Q 039650 338 TNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSLIQLE 390 (391)
Q Consensus 338 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 390 (391)
++|++|++++|++++. ..+..+++|+.|++++|++.+..| +..+++|+
T Consensus 331 -~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 331 -TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp -TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred -ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 4999999999999854 578899999999999999997766 77777765
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.6e-33 Score=245.55 Aligned_cols=308 Identities=27% Similarity=0.407 Sum_probs=249.8
Q ss_pred hhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCC
Q 039650 16 EIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNL 95 (391)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 95 (391)
.+.++++|++|+++++.+.. .+ .+..+++|++|++++|.+. .++. +..+++|++|++++|.++. + ..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 35678899999999998864 34 4888999999999999887 4444 7889999999999998884 3 368899999
Q ss_pred ceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEE
Q 039650 96 VNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTL 175 (391)
Q Consensus 96 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 175 (391)
++|++++|.+... + .+..+++|+.|++++|...... ..+..+++|++|
T Consensus 113 ~~L~l~~n~i~~~------------------------------~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L 160 (347)
T 4fmz_A 113 RELYLNEDNISDI------------------------------S-PLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYL 160 (347)
T ss_dssp SEEECTTSCCCCC------------------------------G-GGTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEE
T ss_pred CEEECcCCcccCc------------------------------h-hhccCCceeEEECCCCCCcccc-cchhhCCCCcEE
Confidence 9999999887632 1 1556788999999988655333 347888999999
Q ss_pred EcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCccc
Q 039650 176 YLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLN 255 (391)
Q Consensus 176 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 255 (391)
++.+|.+....+ +..+++|+.|++++|.+..... +..+++|+.+++.+|.+....+ +..+++|+.|++++|.+.
T Consensus 161 ~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC
Confidence 999998874433 7788999999999998874332 7788999999999998874433 778899999999999887
Q ss_pred CccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHH
Q 039650 256 GSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLA 335 (391)
Q Consensus 256 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 335 (391)
+..+ +..+++|+++++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|++++..+..+.
T Consensus 235 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 235 DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 5443 78899999999999988864 3567889999999999998764 4578899999999999999988888887
Q ss_pred HhhccccEEEcCCCcccCCCcccccCCccccEEEccccccc
Q 039650 336 NLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELS 376 (391)
Q Consensus 336 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 376 (391)
.++ +|++|++++|++++..+ +..+++|++|++++|+++
T Consensus 309 ~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 309 GLT-NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCT-TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccc-cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 776 99999999999986555 888999999999999875
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-34 Score=264.89 Aligned_cols=317 Identities=21% Similarity=0.172 Sum_probs=261.7
Q ss_pred cccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCC
Q 039650 4 FSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKG 83 (391)
Q Consensus 4 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 83 (391)
.++++++.+. ..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.+..
T Consensus 18 c~~~~l~~ip-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 18 CHRKRFVAVP-EGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp CCSCCCSSCC-SCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred eCCCCcCcCC-CCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 3445555332 222 2589999999999987778889999999999999998887778888999999999999999886
Q ss_pred CCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCC
Q 039650 84 SIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP 163 (391)
Q Consensus 84 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 163 (391)
..+..+..+++|++|++++|.+....+..+..+++|+ .+.+..+.+....+..|..+++|+.|++++|.++...+
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK-----SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC-----EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCC-----EEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 6666788999999999999999888888888888888 55555677777777788889999999999998886666
Q ss_pred CCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCC
Q 039650 164 YSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRS 243 (391)
Q Consensus 164 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 243 (391)
..+..+++|+.|++.+|.+....+..+..+++|+.|++++|......+.......+|+.|++++|.++......+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 66888899999999999887666667888899999999988766555555555668999999999888666667888899
Q ss_pred CCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCC
Q 039650 244 LSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSS 323 (391)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 323 (391)
|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 99999999988877777788899999999999998877777888889999999999998877777788889999999999
Q ss_pred Ccccc
Q 039650 324 NKLNG 328 (391)
Q Consensus 324 ~~i~~ 328 (391)
|.+..
T Consensus 330 N~l~c 334 (477)
T 2id5_A 330 NPLAC 334 (477)
T ss_dssp SCEEC
T ss_pred CCccC
Confidence 98763
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=265.50 Aligned_cols=321 Identities=21% Similarity=0.213 Sum_probs=208.9
Q ss_pred ccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecc
Q 039650 23 FNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHI 102 (391)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 102 (391)
-+.++.++..+. ..|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 356777777776 4555443 6899999999998876777889999999999999999877788999999999999999
Q ss_pred cccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcC
Q 039650 103 NALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNAL 182 (391)
Q Consensus 103 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 182 (391)
|.+....+..|.++++|+ .+.+..+.+....+..+.++++|+.|++++|.+....+..+..+++|+.|++.+|.+
T Consensus 90 n~l~~~~~~~~~~l~~L~-----~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLT-----KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp SCCCSCCTTSSTTCTTCC-----EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CcCCccCcccccCCCCCC-----EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 988866555566666666 334444555555555666666666666666666555555666666666666666666
Q ss_pred CCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccc
Q 039650 183 SGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLAL 262 (391)
Q Consensus 183 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 262 (391)
....+..+..+++|+.|++++|.+.......+..+++|+.|++++|......+.......+|+.|++++|.+.......+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 54444456666666666666666654444455566666666666654433333333334466666666666654443455
Q ss_pred cCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhcccc
Q 039650 263 GNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLK 342 (391)
Q Consensus 263 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 342 (391)
..+++|+.|++++|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+. +|+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~ 323 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG-NLE 323 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG-GCC
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc-ccC
Confidence 5666666666666666655555555666666666666666555555566666666666666666544443343333 666
Q ss_pred EEEcCCCccc
Q 039650 343 VLYLSSNHIV 352 (391)
Q Consensus 343 ~L~l~~~~~~ 352 (391)
.|++++|++.
T Consensus 324 ~L~l~~N~l~ 333 (477)
T 2id5_A 324 TLILDSNPLA 333 (477)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcc
Confidence 6666666554
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.2e-33 Score=268.40 Aligned_cols=371 Identities=23% Similarity=0.204 Sum_probs=249.7
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
+||+++|+|+++.+.+|.++++|++|++++|.+.+..+++|..+++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence 48999999999888999999999999999999988888899999999999999999886666678999999999999999
Q ss_pred cCCCCcccccCCCCCceEEecccccccc-cchhhcccccchhhhhceeeeccccccccccccccCCCCC----CEEECCC
Q 039650 81 LKGSIPSSLGNLTNLVNLHLHINALSGL-IPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSL----SDLRLDY 155 (391)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L----~~L~l~~ 155 (391)
+++..+..|..+++|++|++++|.+... .+..+..+++|+.|.+.. +.+....+..+..+.++ ..++++.
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-----N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-----NKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-----SCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-----ccccccccccccchhhhhhhhhhhhccc
Confidence 9977677899999999999999988754 467778888888664432 22222211111111000 0111111
Q ss_pred CCCCCC------------------------------------------------------C-------------------
Q 039650 156 NTLSGS------------------------------------------------------I------------------- 162 (391)
Q Consensus 156 ~~~~~~------------------------------------------------------~------------------- 162 (391)
+.+... .
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 100000 0
Q ss_pred ------------------------------CCCcCCCCCccEEEcCCCcCCCCCC-------------------ccccCC
Q 039650 163 ------------------------------PYSFGNLTKLVTLYLDTNALSGSIP-------------------DEIRNL 193 (391)
Q Consensus 163 ------------------------------~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~~l~~~ 193 (391)
...+.....++.|++.++.+..... .....+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 0001122234445444443321111 112245
Q ss_pred CcccEEEccCCCCCCC-------------------------ccccccCCCcccEEEccCccccc-ccchhhccCCCCCEE
Q 039650 194 KSLFNLQLDNNTLSGS-------------------------IPLSLGNLTNLTTLYFSMNALSG-SIPNEITNLRSLSDL 247 (391)
Q Consensus 194 ~~L~~L~l~~~~~~~~-------------------------~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L 247 (391)
++|+.++++.+.+... ....+..+++|+.+++..+.... .....+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 6777777777655311 11123344555555555543322 222345566777777
Q ss_pred EcCCCcccCccCccccCCCCccEEEccCCccc-cccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcc
Q 039650 248 QLSENTLNGSIPLALGNLTKLVVLYLSINKLS-GSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKL 326 (391)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 326 (391)
+++.+.+....+..+..++.++.+++++|... ...+..+..+++|+.|++++|.+....+..|.++++|+.|++++|++
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 77777776666667777788888888887643 34556677788888888888888777777788888888888888888
Q ss_pred cchhHHHHHHhhccccEEEcCCCcccCCCcccccCC-ccccEEEcccccccc
Q 039650 327 NGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKF-SSLIQLILTNNELSG 377 (391)
Q Consensus 327 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 377 (391)
++..+..+..+. +|+.|++++|++++..+..+..+ ++|+.|++++|++.+
T Consensus 531 ~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 531 FSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CBCCCGGGTTCT-TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCChhHHhCCC-CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 766666666555 78888888888887777777777 578888888887764
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.5e-32 Score=238.83 Aligned_cols=298 Identities=26% Similarity=0.380 Sum_probs=244.4
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|+++++.+.+.. .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+. .++ .+..+++|++|++++|.+
T Consensus 49 L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~~n~i 122 (347)
T 4fmz_A 49 LVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNI 122 (347)
T ss_dssp EECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECTTSCC
T ss_pred EEEeCCccccch--hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECcCCcc
Confidence 678889888654 388999999999999998754 33 999999999999999887 444 588999999999999998
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS 161 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (391)
... +. +..+++|++|++++|..... ...+..+++|+.|+++++.+...
T Consensus 123 ~~~-~~-~~~l~~L~~L~l~~n~~~~~------------------------------~~~~~~l~~L~~L~l~~~~~~~~ 170 (347)
T 4fmz_A 123 SDI-SP-LANLTKMYSLNLGANHNLSD------------------------------LSPLSNMTGLNYLTVTESKVKDV 170 (347)
T ss_dssp CCC-GG-GTTCTTCCEEECTTCTTCCC------------------------------CGGGTTCTTCCEEECCSSCCCCC
T ss_pred cCc-hh-hccCCceeEEECCCCCCccc------------------------------ccchhhCCCCcEEEecCCCcCCc
Confidence 843 33 88999999999999854321 12256788999999999988754
Q ss_pred CCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccC
Q 039650 162 IPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNL 241 (391)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (391)
.+ +..+++|+.|++.+|.+....+ +..+++|+.+++++|.+..... +..+++|+.|++++|.++...+ +..+
T Consensus 171 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l 242 (347)
T 4fmz_A 171 TP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANL 242 (347)
T ss_dssp GG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred hh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcC
Confidence 33 7788999999999998874433 7888999999999998874433 7788999999999998875443 7889
Q ss_pred CCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEc
Q 039650 242 RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDL 321 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 321 (391)
++|+.|++++|.+.+. ..+..+++|+++++++|.+.+. ..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 9999999999988743 4578899999999999998865 35678899999999999998888888999999999999
Q ss_pred CCCcccchhHHHHHHhhccccEEEcCCCccc
Q 039650 322 SSNKLNGSILLSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 322 ~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~ 352 (391)
++|++++..+ +..++ +|++|++++|+++
T Consensus 319 ~~n~l~~~~~--~~~l~-~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 319 SQNHITDIRP--LASLS-KMDSADFANQVIK 346 (347)
T ss_dssp CSSSCCCCGG--GGGCT-TCSEESSSCC---
T ss_pred cCCccccccC--hhhhh-ccceeehhhhccc
Confidence 9999987655 54444 9999999999876
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-32 Score=247.03 Aligned_cols=310 Identities=23% Similarity=0.241 Sum_probs=220.8
Q ss_pred CCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEE
Q 039650 20 LSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLH 99 (391)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 99 (391)
++++++++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666655543333455566666666666655544444555666666666666666555555556666666666
Q ss_pred ecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCC
Q 039650 100 LHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDT 179 (391)
Q Consensus 100 l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 179 (391)
+++|.+. ...+..++++++|+.|++++|.+....+..+..+++|+.|++.+
T Consensus 124 L~~n~l~-----------------------------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 124 LERNDLS-----------------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp CCSSCCC-----------------------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS
T ss_pred CCCCccC-----------------------------cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC
Confidence 6665554 33334467778888888888888766677788888888888888
Q ss_pred CcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccC
Q 039650 180 NALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIP 259 (391)
Q Consensus 180 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 259 (391)
|.+... .+..+++|+.+++++|.+.. +...++|+.|++++|.+..... ...++|+.|++++|.+.+.
T Consensus 175 n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~-- 241 (390)
T 3o6n_A 175 NRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT-- 241 (390)
T ss_dssp SCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--
T ss_pred CcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--
Confidence 887643 35667888888888887652 3345688889998887764322 2347899999999888743
Q ss_pred ccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhc
Q 039650 260 LALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTN 339 (391)
Q Consensus 260 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 339 (391)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+... +..+..+++|+.|++++|++. ..+..+..+.
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~- 318 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD- 318 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccC-
Confidence 4677889999999999988877777888889999999999988653 334467889999999999887 4555666555
Q ss_pred cccEEEcCCCcccCCCcccccCCccccEEEcccccccc
Q 039650 340 SLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSG 377 (391)
Q Consensus 340 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 377 (391)
+|++|++++|++++. .+..+++|++|++++|++.+
T Consensus 319 ~L~~L~L~~N~i~~~---~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 319 RLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEH
T ss_pred cCCEEECCCCcccee---CchhhccCCEEEcCCCCccc
Confidence 899999999988843 26778899999999998764
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.4e-32 Score=242.53 Aligned_cols=303 Identities=21% Similarity=0.206 Sum_probs=182.7
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|+++++.++......|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 129 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc
Confidence 67888899888788899999999999999999877888999999999999999999877777889999999999999999
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS 161 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (391)
....+..+..+++|++|++++|.+....+..+..++ +|+.|++++|.++..
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------------------------~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-----------------------------SLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT-----------------------------TCCEEECCSSCCSBC
T ss_pred CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC-----------------------------CCCEEECCCCcCCcc
Confidence 955555678999999999999988765555454444 444444444444322
Q ss_pred CCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccC
Q 039650 162 IPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNL 241 (391)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (391)
.+..+++|+.+++.+|.+.. +...++|+.|++++|.+... +. ...++|+.|++++|.++.. ..+..+
T Consensus 181 ---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 181 ---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp ---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred ---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCC
Confidence 12334444555554444331 12223445555555444321 11 1224455555555544422 334445
Q ss_pred CCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEc
Q 039650 242 RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDL 321 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 321 (391)
++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. +..+..+++|+.|++++|.+... +..+..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEEC
Confidence 5555555555555444444445555555555555554422 22223445555555555554322 222344455555555
Q ss_pred CCCcccchhHHHHHHhhccccEEEcCCCccc
Q 039650 322 SSNKLNGSILLSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 322 ~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~ 352 (391)
++|++++.. +.. .++|+.|++++|++.
T Consensus 326 ~~N~i~~~~---~~~-~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 326 DHNSIVTLK---LST-HHTLKNLTLSHNDWD 352 (390)
T ss_dssp CSSCCCCCC---CCT-TCCCSEEECCSSCEE
T ss_pred CCCccceeC---chh-hccCCEEEcCCCCcc
Confidence 555554321 111 224555555555544
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-31 Score=254.29 Aligned_cols=309 Identities=23% Similarity=0.235 Sum_probs=214.4
Q ss_pred CcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEe
Q 039650 21 SSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHL 100 (391)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 100 (391)
++++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 44555555555444333333444555555555555544334444455555555555555555444444455555555555
Q ss_pred cccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCC
Q 039650 101 HINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTN 180 (391)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 180 (391)
++|.+. ...+..|+++++|+.|++++|.+....+..+..+++|+.|++.+|
T Consensus 131 ~~n~l~-----------------------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 131 ERNDLS-----------------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CSSCCC-----------------------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred eCCCCC-----------------------------CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 555443 344445677888888888888888777777888888889988888
Q ss_pred cCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCc
Q 039650 181 ALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPL 260 (391)
Q Consensus 181 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 260 (391)
.+... .+..+++|+.|++++|.+.. +...++|+.|++++|.+...... ..++|+.|++++|.+.+ +.
T Consensus 182 ~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~ 248 (597)
T 3oja_B 182 RLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TA 248 (597)
T ss_dssp CCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CG
T ss_pred CCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--Ch
Confidence 87643 25567888888888886652 34557888899988877633222 23688999999988874 35
Q ss_pred cccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhcc
Q 039650 261 ALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNS 340 (391)
Q Consensus 261 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 340 (391)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+... +..+..+++|+.|++++|.++ .+|..+..++ +
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~-~ 325 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-R 325 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-T
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCC-C
Confidence 677889999999999988877777888889999999999988653 444566889999999999887 5666666555 8
Q ss_pred ccEEEcCCCcccCCCcccccCCccccEEEcccccccc
Q 039650 341 LKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSG 377 (391)
Q Consensus 341 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 377 (391)
|+.|++++|++++. .+..+++|+.|++++|++.+
T Consensus 326 L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 326 LENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEH
T ss_pred CCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCCC
Confidence 99999999988743 26678899999999998764
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-31 Score=243.72 Aligned_cols=336 Identities=22% Similarity=0.226 Sum_probs=209.7
Q ss_pred CchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccC
Q 039650 12 LIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGN 91 (391)
Q Consensus 12 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 91 (391)
..+..+.++++|++|+++++.+.+. | .+..+++|++|++++|.+.+ ++ +..+++|++|++++|.+++. + +..
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 3344566777777777777777643 3 57777777777777777663 33 56677777777777777643 2 667
Q ss_pred CCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCC
Q 039650 92 LTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTK 171 (391)
Q Consensus 92 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 171 (391)
+++|++|++++|.+... .+..+++|+ .+.+..+.+... .++.+++|+.|++++|...+.. .+..+++
T Consensus 105 l~~L~~L~L~~N~l~~l---~~~~l~~L~-----~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL---DVSQNPLLT-----YLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp CTTCCEEECCSSCCSCC---CCTTCTTCC-----EEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred CCcCCEEECCCCcCCee---cCCCCCcCC-----EEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 77777777777777654 256666666 333444444443 2666777777777777433233 3556777
Q ss_pred ccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCC
Q 039650 172 LVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSE 251 (391)
Q Consensus 172 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 251 (391)
|+.|++.+|.+... + +..+++|+.|++++|.+... .+..+++|+.|++++|.++.. + +..+++|+.|++++
T Consensus 172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCS
T ss_pred CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeC
Confidence 77777777777642 2 66677777777777776643 356677777777777777642 2 56677777777777
Q ss_pred CcccCccCccccCCCCccEEEccCCcccccc--------ccccccCCcccEEEcCCCccCchhhH--------hhhCCCC
Q 039650 252 NTLNGSIPLALGNLTKLVVLYLSINKLSGSI--------SLSYASLTSLTNLYLYENSLCDSIQK--------EIGDMKS 315 (391)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~ 315 (391)
|.+.+.. ...+++|+.++++++.+.... ......+++|+.|++++|......+. .+..+++
T Consensus 243 N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 243 NPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 7776543 234455555544444433211 11134567777777777754221111 2445677
Q ss_pred ccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCc-----------ccccCCccccEEEccccccccCCCcccc
Q 039650 316 LSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIP-----------LGHGKFSSLIQLILTNNELSGQLSPELG 384 (391)
Q Consensus 316 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----------~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 384 (391)
|+.|++++|++++. .+..+. +|+.|++++|++.+... ....++..|+.+++++|++++.+|..+.
T Consensus 320 L~~L~L~~N~l~~l---~l~~l~-~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 320 LVYLYLNNTELTEL---DVSHNT-KLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp CCEEECTTCCCSCC---CCTTCT-TCSEEECCSSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CCEEECCCCccccc---ccccCC-cCcEEECCCCCCCCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHh
Confidence 77777777777653 244443 77777777777764200 0012346778889999999988886543
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.8e-31 Score=256.34 Aligned_cols=363 Identities=22% Similarity=0.199 Sum_probs=263.2
Q ss_pred cccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEec
Q 039650 22 SFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLH 101 (391)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 101 (391)
++++|++++|.+++..+..|..+++|++|++++|.+.+..+.+|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 79999999999998888899999999999999999986667789999999999999999997667789999999999999
Q ss_pred ccccccccchhhcccccchhhhhceeeecccccccc-ccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCc----cEEE
Q 039650 102 INALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDL-IPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKL----VTLY 176 (391)
Q Consensus 102 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~ 176 (391)
+|.+....+..|+++++|+.| .+..+.+... .+..++.+++|+.|++++|.+....+..+..+.++ ..++
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L-----~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKEL-----NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEE-----ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred CCcCCCCChhhhhcCcccCee-----ccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 999998888889999999944 4555666543 46778889999999999998875544443322111 1122
Q ss_pred cCCCcCCCCC----------------------------------------------------------------------
Q 039650 177 LDTNALSGSI---------------------------------------------------------------------- 186 (391)
Q Consensus 177 l~~~~~~~~~---------------------------------------------------------------------- 186 (391)
+..+.+....
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 2221111000
Q ss_pred ---------------------------------CccccCCCcccEEEccCCCCCCCc-------------------cccc
Q 039650 187 ---------------------------------PDEIRNLKSLFNLQLDNNTLSGSI-------------------PLSL 214 (391)
Q Consensus 187 ---------------------------------~~~l~~~~~L~~L~l~~~~~~~~~-------------------~~~~ 214 (391)
...+.....++.|++.++.+.... ....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 000111234455555544332110 1112
Q ss_pred cCCCcccEEEccCccccc--ccchhh-----------------------ccCCCCCEEEcCCCcccCc-cCccccCCCCc
Q 039650 215 GNLTNLTTLYFSMNALSG--SIPNEI-----------------------TNLRSLSDLQLSENTLNGS-IPLALGNLTKL 268 (391)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~--~~~~~~-----------------------~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L 268 (391)
..+++|+.++++.|.+.. ..+..+ ..+++|+.+++..+..... ....+..++++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 245778888888776532 122222 2344555555554433322 23345667788
Q ss_pred cEEEccCCccccccccccccCCcccEEEcCCCccC-chhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcC
Q 039650 269 VVLYLSINKLSGSISLSYASLTSLTNLYLYENSLC-DSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLS 347 (391)
Q Consensus 269 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 347 (391)
+.++++.|.+.......+..++.++.|++++|.+. ...+..+..+++|+.|++++|++++..+..+..+. +|++|+++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~-~L~~L~Ls 526 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMS 526 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC-CCCEEECC
Confidence 88888888877666777788899999999999753 34556788999999999999999987787787776 99999999
Q ss_pred CCcccCCCcccccCCccccEEEccccccccCCCcccccc-CCCc
Q 039650 348 SNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSL-IQLE 390 (391)
Q Consensus 348 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~ 390 (391)
+|++++..+..+..+++|+.|++++|++++..|..+.++ ++|+
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 999998788889999999999999999998888888776 4554
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=8.4e-31 Score=248.73 Aligned_cols=305 Identities=21% Similarity=0.216 Sum_probs=220.7
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
+++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 57788888888888899999999999999999888888999999999999999999877777789999999999999999
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS 161 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (391)
.+..+..|..+++|++|++++|.+....+..+..+++|+.| .+..+.+... .++.+++|+.|++++|.+..
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-----~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL-----QLSSNRLTHV---DLSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE-----ECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE-----ECcCCCCCCc---ChhhhhhhhhhhcccCcccc-
Confidence 96666667999999999999999987777777777777733 3333444433 24455677777777766542
Q ss_pred CCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccC
Q 039650 162 IPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNL 241 (391)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (391)
+...++|+.|++.+|.+...... ..++|+.|++++|.+.. +..+..+++|+.|++++|.+....+..+..+
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 23445677777777766532221 12567777777777653 2456667777777777777766666667777
Q ss_pred CCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEc
Q 039650 242 RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDL 321 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 321 (391)
++|+.|++++|.+.+ .+..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+.... +..+++|+.|++
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l 352 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 352 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence 777777777777663 3444456677777777777766 33344556677777777777765432 455667777777
Q ss_pred CCCcccch
Q 039650 322 SSNKLNGS 329 (391)
Q Consensus 322 ~~~~i~~~ 329 (391)
++|.+.+.
T Consensus 353 ~~N~~~~~ 360 (597)
T 3oja_B 353 SHNDWDCN 360 (597)
T ss_dssp CSSCEEHH
T ss_pred eCCCCCCh
Confidence 77776643
No 38
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.4e-34 Score=265.55 Aligned_cols=371 Identities=22% Similarity=0.173 Sum_probs=243.0
Q ss_pred CcccccCccCCCchhh-hhcCCcccEEeecCCcCCC----CCCCCCCCCCCccEEecCCcccccCChhhhh-cCC----C
Q 039650 1 LLSFSKNQLSGLIPHE-IGRLSSFNGLSLYSNFLKG----SIPPSLGNLTSLSYIGISNNLLSGSIPNEVE-SLK----S 70 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~----~ 70 (391)
+|+++++++++..... +..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+..+. .++ +
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~ 86 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCc
Confidence 3788999988655444 7889999999999998863 3466788899999999999988754444443 355 6
Q ss_pred CCEEEeeCCccCC----CCcccccCCCCCceEEecccccccccchhhcc-----cccchhhhhceeeeccccccc----c
Q 039650 71 LSDLRLYNNTLKG----SIPSSLGNLTNLVNLHLHINALSGLIPDEIRN-----LEFLSDLIYNYLIYWINALSD----L 137 (391)
Q Consensus 71 L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~l~l~~~~~~~~~~~~----~ 137 (391)
|++|++++|.+.. .++..+..+++|++|++++|.+....+..+.. ..+|+.|.+ ..+.+.. .
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L-----~~n~l~~~~~~~ 161 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL-----EYCSLSAASCEP 161 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC-----TTSCCBGGGHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEEC-----CCCCCCHHHHHH
Confidence 9999999998874 34778899999999999999987554443332 334654433 3344333 2
Q ss_pred ccccccCCCCCCEEECCCCCCCCCCCCCcC-----CCCCccEEEcCCCcCCCC----CCccccCCCcccEEEccCCCCCC
Q 039650 138 IPNEIGNLKSLSDLRLDYNTLSGSIPYSFG-----NLTKLVTLYLDTNALSGS----IPDEIRNLKSLFNLQLDNNTLSG 208 (391)
Q Consensus 138 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~ 208 (391)
++..+..+++|+.|++++|.+.+.....+. ..++|++|++.+|.+... .+..+..+++|+.|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 345556677888888887776533222222 245788888888877643 24455667788888888877653
Q ss_pred Cc-----cccccCCCcccEEEccCcccccc----cchhhccCCCCCEEEcCCCcccCccCccc-----cCCCCccEEEcc
Q 039650 209 SI-----PLSLGNLTNLTTLYFSMNALSGS----IPNEITNLRSLSDLQLSENTLNGSIPLAL-----GNLTKLVVLYLS 274 (391)
Q Consensus 209 ~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~l~l~ 274 (391)
.. ...+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.+.....+ ...++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 22 11222467788888888776643 34455567788888888877653322222 123578888888
Q ss_pred CCccccc----cccccccCCcccEEEcCCCccCchhhHhhhC-----CCCccEEEcCCCcccc----hhHHHHHHhhccc
Q 039650 275 INKLSGS----ISLSYASLTSLTNLYLYENSLCDSIQKEIGD-----MKSLSILDLSSNKLNG----SILLSLANLTNSL 341 (391)
Q Consensus 275 ~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~i~~----~~~~~~~~~~~~L 341 (391)
+|.+++. .+..+..+++|+.|++++|.+.+.....+.. .++|+.|++++|.+++ ..+..+..+. +|
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L 400 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH-SL 400 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC-CC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC-Cc
Confidence 8877643 2334455678888888888775544433332 5678888888888776 3444444443 78
Q ss_pred cEEEcCCCcccCCCccc----cc-CCccccEEEcccccccc
Q 039650 342 KVLYLSSNHIVGEIPLG----HG-KFSSLIQLILTNNELSG 377 (391)
Q Consensus 342 ~~L~l~~~~~~~~~~~~----~~-~~~~L~~L~l~~~~~~~ 377 (391)
++|++++|++++..... +. ..+.|+.|.+.++....
T Consensus 401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 88888888777542222 22 23457777777766553
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.3e-29 Score=231.91 Aligned_cols=309 Identities=22% Similarity=0.238 Sum_probs=240.1
Q ss_pred CCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEeccccccccc
Q 039650 30 SNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLI 109 (391)
Q Consensus 30 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 109 (391)
........+..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+++. + +..+++|++|++++|.+...
T Consensus 27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~- 100 (457)
T 3bz5_A 27 AFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL- 100 (457)
T ss_dssp HTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-
T ss_pred hcCcCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-
Confidence 333334455567889999999999998874 45 688899999999999998854 3 88899999999999998875
Q ss_pred chhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCcc
Q 039650 110 PDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDE 189 (391)
Q Consensus 110 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 189 (391)
.+.++++|+ .+.+..+.+... .++.+++|+.|++++|.++.. .+..+++|++|++.+|...... .
T Consensus 101 --~~~~l~~L~-----~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~ 165 (457)
T 3bz5_A 101 --DVTPLTKLT-----YLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--D 165 (457)
T ss_dssp --CCTTCTTCC-----EEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--C
T ss_pred --ecCCCCcCC-----EEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--c
Confidence 277888888 444555666653 278899999999999998854 3778899999999999544333 4
Q ss_pred ccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCcc
Q 039650 190 IRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLV 269 (391)
Q Consensus 190 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 269 (391)
+..+++|+.|++++|.+.. .+ +..+++|+.|++++|.++.. .+..+++|+.|++++|.+.+ .+ +..+++|+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 7788999999999999874 33 77889999999999988754 37788999999999999986 34 77899999
Q ss_pred EEEccCCccccccccccccCCcccEE----------EcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHH------
Q 039650 270 VLYLSINKLSGSISLSYASLTSLTNL----------YLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLS------ 333 (391)
Q Consensus 270 ~l~l~~~~~~~~~~~~~~~~~~L~~L----------~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~------ 333 (391)
.+++++|.+.+... ..+++|+.+ ++++|.+....+ +..+++|+.|++++|...+..+..
T Consensus 237 ~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~ 311 (457)
T 3bz5_A 237 YFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITE 311 (457)
T ss_dssp EEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred EEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceE
Confidence 99999999986543 344555544 455554333222 457899999999999765444321
Q ss_pred --HHHhhccccEEEcCCCcccCCCcccccCCccccEEEcccccccc
Q 039650 334 --LANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSG 377 (391)
Q Consensus 334 --~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 377 (391)
+... ++|++|++++|++++ + .+..+++|+.|++++|++.+
T Consensus 312 L~l~~~-~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 312 LDLSQN-PKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCTTC-TTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCCB
T ss_pred echhhc-ccCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCCC
Confidence 2223 489999999999996 3 38899999999999999885
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.9e-29 Score=230.73 Aligned_cols=242 Identities=28% Similarity=0.304 Sum_probs=112.6
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCc-------------cEEecCCcccccCChhhhhcC
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSL-------------SYIGISNNLLSGSIPNEVESL 68 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~~~~~~~~~ 68 (391)
|++++|.+ +..+..+.++++|++|++++|.+.+..|..++.+++| ++|++++|.+. .+|. -.
T Consensus 16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~---~~ 90 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE---LP 90 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS---CC
T ss_pred hhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC---Cc
Confidence 56778888 5677778888888888888887777788878777654 77777777765 3333 13
Q ss_pred CCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCC
Q 039650 69 KSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSL 148 (391)
Q Consensus 69 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L 148 (391)
++|++|++++|.+++ +|.. +++|++|++++|.+...... .++|+ .+.+..+.+.. ++ .++++++|
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~-----~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL----PPLLE-----YLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC----CTTCC-----EEECCSSCCSS-CC-CCTTCTTC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC----CCCCC-----EEECcCCCCCC-Cc-ccCCCCCC
Confidence 567777777776664 3332 24555555555555432110 02333 22333333333 22 34555555
Q ss_pred CEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcc--------------------cEEEccCCCCCC
Q 039650 149 SDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSL--------------------FNLQLDNNTLSG 208 (391)
Q Consensus 149 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--------------------~~L~l~~~~~~~ 208 (391)
++|++++|.++. ++.. .++|++|++.+|.+.. .+ .+..+++| +.|++++|.+.
T Consensus 156 ~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE- 228 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-
T ss_pred CEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-
Confidence 555555555442 2221 1245555555554442 22 24444444 44555444444
Q ss_pred CccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccc
Q 039650 209 SIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLS 279 (391)
Q Consensus 209 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 279 (391)
..+ .+..+++|+.|++++|.+... +. .+++|+.|++++|.+.+ .+. ..++|+++++++|.+.
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFS 290 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCc---ccCcCCEEECcCCccC
Confidence 222 244455555555555544421 11 12455555555555442 121 1245555555555554
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2e-29 Score=222.28 Aligned_cols=289 Identities=22% Similarity=0.263 Sum_probs=178.3
Q ss_pred CccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhc
Q 039650 46 SLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYN 125 (391)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 125 (391)
+++.++++++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+...
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------- 93 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI----------------- 93 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----------------
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-----------------
Confidence 4666666665554 444433 24566666666665544455566666666666666555422
Q ss_pred eeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCC
Q 039650 126 YLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNT 205 (391)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 205 (391)
.+..+.++++|++|++++|.+.. ++..+. ++|++|++.+|.+....+..+..+++|+.|++++|.
T Consensus 94 ------------~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 94 ------------HEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp ------------CGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred ------------CHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 23344455566666666665552 222222 566666666666654444456666666666666665
Q ss_pred CCC--CccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccc
Q 039650 206 LSG--SIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSIS 283 (391)
Q Consensus 206 ~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 283 (391)
+.. ..+..+..+ +|+.+++++|.++.. +..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 159 l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 159 LENSGFEPGAFDGL-KLNYLRISEAKLTGI-PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred cccCCCCcccccCC-ccCEEECcCCCCCcc-Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 532 233334444 667777777666532 2222 2577777777777776666667777788888888887776666
Q ss_pred cccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHh-----hccccEEEcCCCccc--CCCc
Q 039650 284 LSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANL-----TNSLKVLYLSSNHIV--GEIP 356 (391)
Q Consensus 284 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~-----~~~L~~L~l~~~~~~--~~~~ 356 (391)
..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|++++..+..+... .+.|+.|++++|++. +..+
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred hHhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 667777788888888887753 34456777888888888888776555554433 246888888888876 4466
Q ss_pred ccccCCccccEEEccccc
Q 039650 357 LGHGKFSSLIQLILTNNE 374 (391)
Q Consensus 357 ~~~~~~~~L~~L~l~~~~ 374 (391)
..+..+++|+.+++++|+
T Consensus 314 ~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGTTBCCSTTEEC----
T ss_pred ccccccchhhhhhccccc
Confidence 778888888888888874
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.8e-28 Score=215.96 Aligned_cols=289 Identities=22% Similarity=0.260 Sum_probs=184.1
Q ss_pred cccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEec
Q 039650 22 SFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLH 101 (391)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 101 (391)
+++.++++++.+. .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 7888888888776 4554443 678889999888876555578888889999999888887668888888899999988
Q ss_pred ccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCc
Q 039650 102 INALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNA 181 (391)
Q Consensus 102 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 181 (391)
+|.+...... + .++|+.|++++|.+....+..+..+++|+.|++.+|.
T Consensus 109 ~n~l~~l~~~------------------------------~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 109 KNQLKELPEK------------------------------M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp SSCCSBCCSS------------------------------C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred CCcCCccChh------------------------------h--cccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence 8877633111 1 1456666666666654444455566666666666666
Q ss_pred CCC--CCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccC
Q 039650 182 LSG--SIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIP 259 (391)
Q Consensus 182 ~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 259 (391)
+.. ..+..+..+++|+.|++++|.+.. .+..+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred CCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence 542 334455666666666666666552 22222 2566777777666665555666666777777777776665555
Q ss_pred ccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhC------CCCccEEEcCCCcccc--hhH
Q 039650 260 LALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGD------MKSLSILDLSSNKLNG--SIL 331 (391)
Q Consensus 260 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~i~~--~~~ 331 (391)
..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+.......+.. .++++.+++++|.+.. ..+
T Consensus 234 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~ 312 (330)
T 1xku_A 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312 (330)
T ss_dssp TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence 55666677777777777666 33444556667777777777766554444432 3567777777776653 223
Q ss_pred HHHHHhhccccEEEcCCCc
Q 039650 332 LSLANLTNSLKVLYLSSNH 350 (391)
Q Consensus 332 ~~~~~~~~~L~~L~l~~~~ 350 (391)
..+.. .++++.+++++|+
T Consensus 313 ~~f~~-~~~l~~l~L~~N~ 330 (330)
T 1xku_A 313 STFRC-VYVRAAVQLGNYK 330 (330)
T ss_dssp GGGTT-CCCGGGEEC----
T ss_pred ccccc-ccceeEEEecccC
Confidence 33333 3367777777663
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-28 Score=217.47 Aligned_cols=288 Identities=20% Similarity=0.239 Sum_probs=207.8
Q ss_pred cccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEec
Q 039650 22 SFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLH 101 (391)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 101 (391)
+++.++++++.+. ..|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 7999999999887 455555 3789999999999886667789999999999999999997778899999999999999
Q ss_pred ccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCc
Q 039650 102 INALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNA 181 (391)
Q Consensus 102 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 181 (391)
+|.+....+ .+. ++|+.|++++|.+....+..+..+++|+.|++.+|.
T Consensus 111 ~n~l~~l~~------------------------------~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 111 KNHLVEIPP------------------------------NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp SSCCCSCCS------------------------------SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred CCcCCccCc------------------------------ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 998763311 111 567777777777775555567777777777777777
Q ss_pred CCC--CCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccC
Q 039650 182 LSG--SIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIP 259 (391)
Q Consensus 182 ~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 259 (391)
+.. ..+..+..+ +|+.|++++|.+.. .+..+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+
T Consensus 159 l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 159 LENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred cccCCCCcccccCC-ccCEEECcCCCCCc-cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 642 334445555 77777777777663 33322 2677788888877776666677777888888888887776666
Q ss_pred ccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhC------CCCccEEEcCCCccc--chhH
Q 039650 260 LALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGD------MKSLSILDLSSNKLN--GSIL 331 (391)
Q Consensus 260 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~i~--~~~~ 331 (391)
..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+.......+.. .++|+.+++.+|.+. +..+
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 66777788888888888776 44445677788888888888876655555543 366788888888776 3344
Q ss_pred HHHHHhhccccEEEcCCCc
Q 039650 332 LSLANLTNSLKVLYLSSNH 350 (391)
Q Consensus 332 ~~~~~~~~~L~~L~l~~~~ 350 (391)
..+..+ ++|+.+++++|+
T Consensus 314 ~~~~~l-~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCV-TDRLAIQFGNYK 331 (332)
T ss_dssp GGGTTB-CCSTTEEC----
T ss_pred cccccc-chhhhhhccccc
Confidence 444443 478888888774
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=5.5e-28 Score=220.96 Aligned_cols=329 Identities=28% Similarity=0.301 Sum_probs=221.0
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
|++++|++++... -.++|++|++++|.+.+ +|.. .++|++|++++|.+. .++.. .++|++|++++|.+
T Consensus 76 L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 76 LELNNLGLSSLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQL 143 (454)
T ss_dssp EECTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCC
T ss_pred EEecCCccccCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC---CCCCCEEECcCCCC
Confidence 4566666654322 12567777777777764 4432 367888888877765 33321 26788999988888
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCC
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGS 161 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 161 (391)
.+ +| .+..+++|++|++++|.+... +..+ .+|+ .+.+..+.+... + .++++++|+.|++++|.+..
T Consensus 144 ~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~~~---~~L~-----~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 144 EK-LP-ELQNSSFLKIIDVDNNSLKKL-PDLP---PSLE-----FIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK- 209 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSCC-CCCC---TTCC-----EEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-
T ss_pred CC-Cc-ccCCCCCCCEEECCCCcCccc-CCCc---cccc-----EEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-
Confidence 85 55 588889999999999888753 3332 3444 555555666653 4 58889999999999998874
Q ss_pred CCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccC
Q 039650 162 IPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNL 241 (391)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 241 (391)
.+.. .++|++|++.+|.+. ..+ .+..+++|+.|++++|.+.. .+. ..++|+.|++++|.+.. .+. .+
T Consensus 210 l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~---~~ 276 (454)
T 1jl5_A 210 LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPE---LP 276 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCC---CC
T ss_pred CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCc---cc
Confidence 3332 358999999999887 444 48899999999999998873 332 34899999999998874 232 24
Q ss_pred CCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEc
Q 039650 242 RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDL 321 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 321 (391)
++|+.|++++|.+.+. +. ..++|+.+++++|.+.+.. ...++|+.|++++|.+...+. .+++|+.|++
T Consensus 277 ~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L 344 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPA----LPPRLERLIA 344 (454)
T ss_dssp TTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred CcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCccc----CCcCcCCEEECCCCccccccc----cCCcCCEEEC
Confidence 7899999999988742 21 1378999999999987522 112589999999999865322 3689999999
Q ss_pred CCCcccchhHHHHHHhhccccEEEcCCCcccC--CCcccccCC-------------ccccEEEcccccccc--CCCcccc
Q 039650 322 SSNKLNGSILLSLANLTNSLKVLYLSSNHIVG--EIPLGHGKF-------------SSLIQLILTNNELSG--QLSPELG 384 (391)
Q Consensus 322 ~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~~~~--~~~~~~~ 384 (391)
++|+++. .|. .+++|++|++++|++++ .+|..+.++ ++|+.|++++|++.+ .+|..+.
T Consensus 345 ~~N~l~~-lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 345 SFNHLAE-VPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp CSSCCSC-CCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred CCCcccc-ccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 9999983 444 34589999999999997 677777777 899999999999986 6676554
Q ss_pred cc
Q 039650 385 SL 386 (391)
Q Consensus 385 ~~ 386 (391)
.+
T Consensus 420 ~L 421 (454)
T 1jl5_A 420 DL 421 (454)
T ss_dssp --
T ss_pred he
Confidence 43
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.3e-28 Score=213.54 Aligned_cols=285 Identities=24% Similarity=0.294 Sum_probs=207.8
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
+++++++++... ..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 36 l~~~~~~l~~lp-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 36 VQCSDLGLEKVP-KDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp EECTTSCCCSCC-CSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCccccC-ccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence 455666666433 222 36899999999999887777899999999999999999877788899999999999999998
Q ss_pred CCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCC-
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSG- 160 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 160 (391)
+ .+|..+. ++|++|++++|.+....+. .+.++++|+.|+++++.+..
T Consensus 113 ~-~l~~~~~--~~L~~L~l~~n~l~~~~~~-----------------------------~~~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 113 K-ELPEKMP--KTLQELRVHENEITKVRKS-----------------------------VFNGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp S-BCCSSCC--TTCCEEECCSSCCCBBCHH-----------------------------HHTTCTTCCEEECCSSCCCGG
T ss_pred C-ccChhhc--ccccEEECCCCcccccCHh-----------------------------HhcCCccccEEECCCCcCCcc
Confidence 8 4554443 7899999999988754333 34556667777777766642
Q ss_pred -CCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhc
Q 039650 161 -SIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEIT 239 (391)
Q Consensus 161 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 239 (391)
..+..+..+++|+.|++.+|.+.. .+..+. ++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+.
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred CcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 344556667777777777777663 232222 6777778877777655556677777888888888877766666777
Q ss_pred cCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccccccccc------CCcccEEEcCCCccCc--hhhHhhh
Q 039650 240 NLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYAS------LTSLTNLYLYENSLCD--SIQKEIG 311 (391)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~ 311 (391)
.+++|+.|++++|.+. ..+..+..+++|+++++++|.++......+.. .+.++.+++++|++.. ..+..+.
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 7888888888888777 55666777888888888888887655555432 3678889999888753 4556778
Q ss_pred CCCCccEEEcCCCc
Q 039650 312 DMKSLSILDLSSNK 325 (391)
Q Consensus 312 ~~~~L~~L~l~~~~ 325 (391)
.+++++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 88899999988874
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3e-32 Score=251.56 Aligned_cols=354 Identities=19% Similarity=0.177 Sum_probs=267.5
Q ss_pred CCcccEEeecCCcCCCCCC-CCCCCCCCccEEecCCccccc----CChhhhhcCCCCCEEEeeCCccCCCCcccc-cCCC
Q 039650 20 LSSFNGLSLYSNFLKGSIP-PSLGNLTSLSYIGISNNLLSG----SIPNEVESLKSLSDLRLYNNTLKGSIPSSL-GNLT 93 (391)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~ 93 (391)
.++|++|+++++.+.+... ..+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 3689999999998764332 236788999999999998764 345667788999999999998764333333 3454
Q ss_pred ----CCceEEecccccccc----cchhhcccccchhhhhceeeeccccccccccc----c-ccCCCCCCEEECCCCCCCC
Q 039650 94 ----NLVNLHLHINALSGL----IPDEIRNLEFLSDLIYNYLIYWINALSDLIPN----E-IGNLKSLSDLRLDYNTLSG 160 (391)
Q Consensus 94 ----~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~----~-~~~~~~L~~L~l~~~~~~~ 160 (391)
+|++|++++|.+... .+..+..+++|+.|.+. .+.+....+. . ....++|+.|++++|.++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls-----~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS-----DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECC-----SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECC-----CCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 799999999998853 46778888888855544 4444332222 2 2335689999999998875
Q ss_pred CC----CCCcCCCCCccEEEcCCCcCCCCCCcccc-----CCCcccEEEccCCCCCCC----ccccccCCCcccEEEccC
Q 039650 161 SI----PYSFGNLTKLVTLYLDTNALSGSIPDEIR-----NLKSLFNLQLDNNTLSGS----IPLSLGNLTNLTTLYFSM 227 (391)
Q Consensus 161 ~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~ 227 (391)
.. +..+..+++|++|++.+|.+.+.....+. ..++|+.|++++|.+... .+..+..+++|+.|++++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 33 44556679999999999987643333332 356999999999988754 355566789999999999
Q ss_pred cccccccc-----hhhccCCCCCEEEcCCCcccCc----cCccccCCCCccEEEccCCccccccccccc-----cCCccc
Q 039650 228 NALSGSIP-----NEITNLRSLSDLQLSENTLNGS----IPLALGNLTKLVVLYLSINKLSGSISLSYA-----SLTSLT 293 (391)
Q Consensus 228 ~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~L~ 293 (391)
|.++.... ..+..+++|+.|++++|.++.. .+..+..+++|++|++++|.+.+.....+. ..++|+
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 98764332 2223578999999999988743 355667789999999999988754333332 236999
Q ss_pred EEEcCCCccCch----hhHhhhCCCCccEEEcCCCcccchhHHHHHHh----hccccEEEcCCCcccC----CCcccccC
Q 039650 294 NLYLYENSLCDS----IQKEIGDMKSLSILDLSSNKLNGSILLSLANL----TNSLKVLYLSSNHIVG----EIPLGHGK 361 (391)
Q Consensus 294 ~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~----~~~L~~L~l~~~~~~~----~~~~~~~~ 361 (391)
.|++++|.+... .+..+..+++|+.|++++|.+++..+..+... .++|++|++++|++++ .++..+..
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 999999998764 34566778999999999999998777777653 3489999999999986 56777888
Q ss_pred CccccEEEccccccccC
Q 039650 362 FSSLIQLILTNNELSGQ 378 (391)
Q Consensus 362 ~~~L~~L~l~~~~~~~~ 378 (391)
+++|++|++++|++...
T Consensus 397 ~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCCCEEECCSSSCCHH
T ss_pred CCCccEEECCCCCCCHH
Confidence 99999999999998754
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=4.7e-29 Score=217.54 Aligned_cols=249 Identities=31% Similarity=0.474 Sum_probs=171.0
Q ss_pred cccEEeecCCcCCC--CCCCCCCCCCCccEEecCC-cccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceE
Q 039650 22 SFNGLSLYSNFLKG--SIPPSLGNLTSLSYIGISN-NLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNL 98 (391)
Q Consensus 22 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 98 (391)
++++|+++++.+.+ ..|..+..+++|++|++++ +.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555544 4455555555555555552 44444455555555555555555555544445555555555555
Q ss_pred EecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCC-CccEEEc
Q 039650 99 HLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLT-KLVTLYL 177 (391)
Q Consensus 99 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l 177 (391)
++++|.+. ...+..+..+++|++|++++|.+.+..+..+..++ +|+.|++
T Consensus 131 ~Ls~N~l~-----------------------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 131 DFSYNALS-----------------------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp ECCSSEEE-----------------------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred eCCCCccC-----------------------------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 55555444 34555667778888888888887766677777776 8888888
Q ss_pred CCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCc
Q 039650 178 DTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGS 257 (391)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 257 (391)
.+|.+....+..+..+. |+.|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+.+.
T Consensus 182 ~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEEC
T ss_pred cCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCc
Confidence 88887766666777766 88888888887766677777888888888888887644443 66778888888888888777
Q ss_pred cCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCcc
Q 039650 258 IPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSL 302 (391)
Q Consensus 258 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 302 (391)
.+..+..+++|++|++++|.+.+..+.. ..+++|+.+++++|+.
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 7888888888999999988887665554 6678888888888873
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.5e-28 Score=214.41 Aligned_cols=235 Identities=35% Similarity=0.538 Sum_probs=185.6
Q ss_pred ccccccCCCCCCEEECCC-CCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccC
Q 039650 138 IPNEIGNLKSLSDLRLDY-NTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGN 216 (391)
Q Consensus 138 ~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 216 (391)
++..+.++++|+.|++++ +.+.+..|..+..+++|++|++.+|.+....+..+..+++|+.|++++|.+....+..+..
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 345566677777888874 6666666777777888888888887776566667777888888888888777666677777
Q ss_pred CCcccEEEccCcccccccchhhccCC-CCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEE
Q 039650 217 LTNLTTLYFSMNALSGSIPNEITNLR-SLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNL 295 (391)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 295 (391)
+++|+.|++++|.+....+..+..++ +|+.|++++|.+.+..+..+..+. |++|++++|.+.+..+..+..+++|+.|
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 88888888888887766677777776 888888888888767777777776 8888888888887777778888889999
Q ss_pred EcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEcccccc
Q 039650 296 YLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNEL 375 (391)
Q Consensus 296 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 375 (391)
++++|.+....+. +..+++|+.|++++|++++..|..+..+. +|++|++++|++++.+|.. .++++|+.+++++|+.
T Consensus 227 ~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 227 HLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp ECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT-TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred ECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc-CCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 9988888654443 67788999999999999878888877766 8999999999998777776 7889999999999974
Q ss_pred c
Q 039650 376 S 376 (391)
Q Consensus 376 ~ 376 (391)
.
T Consensus 304 l 304 (313)
T 1ogq_A 304 L 304 (313)
T ss_dssp E
T ss_pred c
Confidence 4
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.1e-30 Score=246.71 Aligned_cols=236 Identities=15% Similarity=0.079 Sum_probs=128.2
Q ss_pred ccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCC-ccccCCCcccEEEccCCCCCCCccccccCCCcc
Q 039650 142 IGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIP-DEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNL 220 (391)
Q Consensus 142 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 220 (391)
+..+++|+.+++++.... ..+..+..+++|++|++.+|.+..... ..+..+++|+.|++.++............+++|
T Consensus 266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 334445555555443221 333444455566666666655432111 223555666666665221111111222345666
Q ss_pred cEEEccC-----------cccccccc-hhhccCCCCCEEEcCCCcccCccCccccC-CCCccEEEcc----CCccccc--
Q 039650 221 TTLYFSM-----------NALSGSIP-NEITNLRSLSDLQLSENTLNGSIPLALGN-LTKLVVLYLS----INKLSGS-- 281 (391)
Q Consensus 221 ~~L~l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~l~l~----~~~~~~~-- 281 (391)
++|++.+ +.++.... .....+++|+.|+++.+.+++.....+.. +++|++|+++ .+.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 6666662 23322111 12234666777766555554333333333 6777777775 3344432
Q ss_pred ---cccccccCCcccEEEcCCCc--cCchhhHhh-hCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCC-
Q 039650 282 ---ISLSYASLTSLTNLYLYENS--LCDSIQKEI-GDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGE- 354 (391)
Q Consensus 282 ---~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~- 354 (391)
....+..+++|+.|+++.|. +.+.....+ ..+++|+.|++++|++++.....+...+++|++|++++|++++.
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 22224557788888886544 444333333 34788888888888887666555544455888888888887644
Q ss_pred CcccccCCccccEEEccccccccC
Q 039650 355 IPLGHGKFSSLIQLILTNNELSGQ 378 (391)
Q Consensus 355 ~~~~~~~~~~L~~L~l~~~~~~~~ 378 (391)
.+..+..+++|+.|++++|+++..
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhcCccCeeECcCCcCCHH
Confidence 233345778888888888887754
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.7e-26 Score=201.12 Aligned_cols=248 Identities=25% Similarity=0.290 Sum_probs=132.8
Q ss_pred cEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCC--CcccccCCCCCceEEec
Q 039650 24 NGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGS--IPSSLGNLTNLVNLHLH 101 (391)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~ 101 (391)
+.++.+++.+. ..|..+. ++|++|++++|.+....+..+.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 34555555554 3333222 4566666666666532223345666666666666655421 13444455666666666
Q ss_pred ccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCC-CCcCCCCCccEEEcCCC
Q 039650 102 INALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP-YSFGNLTKLVTLYLDTN 180 (391)
Q Consensus 102 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~ 180 (391)
+|.+.. ++..+..+++|+.|+++++.+....+ ..+..+++|+.|++.+|
T Consensus 87 ~n~i~~------------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 87 FNGVIT------------------------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp SCSEEE------------------------------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred CCcccc------------------------------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence 555431 12224445566666666655543322 23444555555555555
Q ss_pred cCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCccccc-ccchhhccCCCCCEEEcCCCcccCccC
Q 039650 181 ALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSG-SIPNEITNLRSLSDLQLSENTLNGSIP 259 (391)
Q Consensus 181 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~ 259 (391)
.+....+.. +..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.+..+
T Consensus 137 ~l~~~~~~~------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 192 (306)
T 2z66_A 137 HTRVAFNGI------------------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192 (306)
T ss_dssp CCEECSTTT------------------------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cCCccchhh------------------------cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH
Confidence 444333333 4444455555555554432 234445555666666666666554445
Q ss_pred ccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCC-CccEEEcCCCcccc
Q 039650 260 LALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMK-SLSILDLSSNKLNG 328 (391)
Q Consensus 260 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~ 328 (391)
..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+....+..+..++ +|+.|++++|.+.+
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 5556666666666666666555444555666666666666666555555555553 67777777776653
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=205.14 Aligned_cols=281 Identities=21% Similarity=0.169 Sum_probs=196.6
Q ss_pred hcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCce
Q 039650 18 GRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVN 97 (391)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 97 (391)
..|+.....+.+++.++ ..|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34566666777777776 3444443 47888888888777544546777888888888888777666667778888888
Q ss_pred EEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCC-CCcCCCCCccEEE
Q 039650 98 LHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP-YSFGNLTKLVTLY 176 (391)
Q Consensus 98 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 176 (391)
|++++|.+... .+..++++++|+.|++++|.+..... ..+..+++|++|+
T Consensus 105 L~Ls~n~l~~~-----------------------------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 105 LDLSYNYLSNL-----------------------------SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp EECCSSCCSSC-----------------------------CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred EECCCCcCCcC-----------------------------CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 88888776532 22335667788888888887774433 4677788888888
Q ss_pred cCCCc-CCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCccc
Q 039650 177 LDTNA-LSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLN 255 (391)
Q Consensus 177 l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 255 (391)
+.+|. +....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 88874 55444566778888888888888877555667777888888888888776444444556788888888888776
Q ss_pred CccCccc---cCCCCccEEEccCCccccc----cccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccc
Q 039650 256 GSIPLAL---GNLTKLVVLYLSINKLSGS----ISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG 328 (391)
Q Consensus 256 ~~~~~~~---~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 328 (391)
+.....+ ...+.++.+++.++.+.+. .+..+..+++|+.|++++|.+...+...+..+++|+.|++++|++.+
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 5433322 2356677778877776532 33445677888888888888876555556778888888888888775
Q ss_pred hh
Q 039650 329 SI 330 (391)
Q Consensus 329 ~~ 330 (391)
..
T Consensus 316 ~~ 317 (353)
T 2z80_A 316 SC 317 (353)
T ss_dssp CH
T ss_pred cC
Confidence 44
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=204.81 Aligned_cols=279 Identities=22% Similarity=0.213 Sum_probs=147.6
Q ss_pred CCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccchhh
Q 039650 43 NLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDL 122 (391)
Q Consensus 43 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 122 (391)
.|+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------- 91 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-------------- 91 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE--------------
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc--------------
Confidence 4555555666666665 4554332 3666666666666644444566666666666666655421
Q ss_pred hhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCC-ccccCCCcccEEEc
Q 039650 123 IYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIP-DEIRNLKSLFNLQL 201 (391)
Q Consensus 123 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l 201 (391)
.+..+.++++|++|++++|.++...+..+..+++|++|++.+|.+..... ..+..+++|+.|++
T Consensus 92 ---------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 92 ---------------EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred ---------------CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEEC
Confidence 22334555666666666666654433335556666666666666553332 24555555555555
Q ss_pred cCCC-CCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccc
Q 039650 202 DNNT-LSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSG 280 (391)
Q Consensus 202 ~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 280 (391)
++|. +....+..+..+++|+.|++++|. +.+..+..+..+++|+++++++|.+..
T Consensus 157 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~------------------------l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 157 GNMDTFTKIQRKDFAGLTFLEELEIDASD------------------------LQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETT------------------------CCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCccccccCHHHccCCCCCCEEECCCCC------------------------cCccCHHHHhccccCCeecCCCCcccc
Confidence 5552 322222334444455555554444 443334444445555555555554443
Q ss_pred ccccccccCCcccEEEcCCCccCchhhH---hhhCCCCccEEEcCCCcccch----hHHHHHHhhccccEEEcCCCcccC
Q 039650 281 SISLSYASLTSLTNLYLYENSLCDSIQK---EIGDMKSLSILDLSSNKLNGS----ILLSLANLTNSLKVLYLSSNHIVG 353 (391)
Q Consensus 281 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~~L~~L~l~~~~~~~ 353 (391)
.....+..+++|+.|++++|.+...... .....+.++.+++.++.+.+. .+..+..+. +|++|++++|+++
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~-~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS-GLLELEFSRNQLK- 290 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT-TCCEEECCSSCCC-
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc-CCCEEECCCCCCC-
Confidence 3222233345555555555554332211 112345566666666666543 233333333 6777777777777
Q ss_pred CCccc-ccCCccccEEEccccccccCC
Q 039650 354 EIPLG-HGKFSSLIQLILTNNELSGQL 379 (391)
Q Consensus 354 ~~~~~-~~~~~~L~~L~l~~~~~~~~~ 379 (391)
.++.. +..+++|++|++++|++.+..
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 34443 467777777777777776543
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.6e-26 Score=199.99 Aligned_cols=246 Identities=24% Similarity=0.223 Sum_probs=173.5
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccC--ChhhhhcCCCCCEEEeeCC
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGS--IPNEVESLKSLSDLRLYNN 79 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 79 (391)
++.++++++.... .+ .++|++|++++|.+.+..+..|..+++|++|++++|.+... .+..+..+++|++|++++|
T Consensus 12 l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCSSCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEcCCCCcccCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 3455666664433 22 26899999999999866666789999999999999987632 3566778999999999999
Q ss_pred ccCCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCC
Q 039650 80 TLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLS 159 (391)
Q Consensus 80 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 159 (391)
.+. .++..+..+++|++|++++|.+....+ ...+..+++|+.|++++|.+.
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~----------------------------~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE----------------------------FSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTT----------------------------TTTTTTCTTCCEEECTTSCCE
T ss_pred ccc-cChhhcCCCCCCCEEECCCCccccccc----------------------------chhhhhccCCCEEECCCCcCC
Confidence 988 567779999999999999998763311 134667899999999999988
Q ss_pred CCCCCCcCCCCCccEEEcCCCcCCC-CCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhh
Q 039650 160 GSIPYSFGNLTKLVTLYLDTNALSG-SIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEI 238 (391)
Q Consensus 160 ~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 238 (391)
...+..+..+++|++|++.+|.+.. ..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+
T Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 7778888889999999999998764 345566777777777777776654444455555666666666655554444444
Q ss_pred ccCCCCCEEEcCCCcccCccCccccCCC-CccEEEccCCccc
Q 039650 239 TNLRSLSDLQLSENTLNGSIPLALGNLT-KLVVLYLSINKLS 279 (391)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~ 279 (391)
..+++|+.|++++|.+.+..+..+..++ +|+++++++|.+.
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 4555555555555555444444444442 4444444444443
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.2e-28 Score=232.87 Aligned_cols=317 Identities=12% Similarity=0.071 Sum_probs=195.5
Q ss_pred cCCCCCEEEeeCCccCCC----CcccccCCCCCceEEecccccccc----cchhhcccccchhhhhceeeeccccccccc
Q 039650 67 SLKSLSDLRLYNNTLKGS----IPSSLGNLTNLVNLHLHINALSGL----IPDEIRNLEFLSDLIYNYLIYWINALSDLI 138 (391)
Q Consensus 67 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 138 (391)
.+++|++|++++|.+++. ++..+..+++|++|+++++.+... .+..+.++++|+.|.+.. +.+.. +
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~-----~~~~~-l 235 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD-----FEILE-L 235 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS-----CBGGG-G
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC-----ccHHH-H
Confidence 445555555555544332 122233445555555555544311 122223444455333322 22222 3
Q ss_pred cccccCCCCCCEEECCCCCCC---CCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCcc-ccc
Q 039650 139 PNEIGNLKSLSDLRLDYNTLS---GSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIP-LSL 214 (391)
Q Consensus 139 ~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~ 214 (391)
+..+..+++|+.|+++..... ......+..+++|+.+.+.++... ..+..+..+++|+.|++++|.+..... ..+
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 344555566666666532211 122334556677777777664322 445566778899999999887543322 235
Q ss_pred cCCCcccEEEccCcccccccchhhccCCCCCEEEcCC----------C-cccCc-cCccccCCCCccEEEccCCcccccc
Q 039650 215 GNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSE----------N-TLNGS-IPLALGNLTKLVVLYLSINKLSGSI 282 (391)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~----------~-~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~ 282 (391)
..+++|+.|++.++............+++|++|++++ + .+++. .......+++|++|++..+.+++..
T Consensus 315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 6788999999884433323334446788999999984 3 33322 1222345899999999888887555
Q ss_pred cccccc-CCcccEEEcC----CCccCch-----hhHhhhCCCCccEEEcCCCc--ccchhHHHHHHhhccccEEEcCCCc
Q 039650 283 SLSYAS-LTSLTNLYLY----ENSLCDS-----IQKEIGDMKSLSILDLSSNK--LNGSILLSLANLTNSLKVLYLSSNH 350 (391)
Q Consensus 283 ~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~~L~~L~l~~~~ 350 (391)
...+.. +++|+.|+++ .+.+++. ....+..+++|+.|++++|. +++..+..+....++|+.|++++|+
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 444444 8899999996 4556542 33446679999999998654 8888888887766799999999999
Q ss_pred ccCC-CcccccCCccccEEEccccccccC-CCccccccCCCc
Q 039650 351 IVGE-IPLGHGKFSSLIQLILTNNELSGQ-LSPELGSLIQLE 390 (391)
Q Consensus 351 ~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~ 390 (391)
+++. .+..+..+++|++|++++|+++.. ++.....+++|+
T Consensus 475 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 475 ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 (592)
T ss_dssp SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence 8864 344557899999999999997653 455556666665
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.1e-25 Score=192.21 Aligned_cols=267 Identities=24% Similarity=0.268 Sum_probs=148.5
Q ss_pred cEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhcee
Q 039650 48 SYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYL 127 (391)
Q Consensus 48 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 127 (391)
++++.+++.+. .+|..+ .++|++|+++++.+.+..+..+..+++|++|++++|.+...
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~------------------- 71 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI------------------- 71 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------------------
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-------------------
Confidence 45566555554 344322 34566666666665544444555566666666655554321
Q ss_pred eeccccccccccccccCCCCCCEEECCCCC-CCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCC
Q 039650 128 IYWINALSDLIPNEIGNLKSLSDLRLDYNT-LSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTL 206 (391)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 206 (391)
.+..+..+++|+.|++++|. +....+..+..+++|++|++.+|.+....+..+..++
T Consensus 72 ----------~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------ 129 (285)
T 1ozn_A 72 ----------DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA------------ 129 (285)
T ss_dssp ----------CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT------------
T ss_pred ----------CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc------------
Confidence 12334445556666666654 4434344555555555555555555443334444444
Q ss_pred CCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccccccc
Q 039650 207 SGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSY 286 (391)
Q Consensus 207 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 286 (391)
+|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 130 ------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 130 ------------ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp ------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred ------------CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence 44444444444443334445556666666666666654444456666777777777777766556666
Q ss_pred ccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchh-HHHHHHhhccccEEEcCCCcccCCCccccc--CCc
Q 039650 287 ASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSI-LLSLANLTNSLKVLYLSSNHIVGEIPLGHG--KFS 363 (391)
Q Consensus 287 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~ 363 (391)
..+++|+.|++++|.+.......+..+++|+.|++++|.+.... ..++.. .++.+..+.+.+.-..|..+. .+.
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~---~l~~~~~~~~~~~c~~p~~l~g~~l~ 274 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA---WLQKFRGSSSEVPCSLPQRLAGRDLK 274 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH---HHHHCCSEECCCBEEESGGGTTCBGG
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH---HHHhcccccCccccCCchHhCCcChh
Confidence 67777777777777776666666777778888888877765322 122222 344444555555444554443 344
Q ss_pred cccEEEcccc
Q 039650 364 SLIQLILTNN 373 (391)
Q Consensus 364 ~L~~L~l~~~ 373 (391)
.++..++.+|
T Consensus 275 ~l~~~~l~~C 284 (285)
T 1ozn_A 275 RLAANDLQGC 284 (285)
T ss_dssp GSCGGGSCCC
T ss_pred hcCHHHhccC
Confidence 5555455554
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2e-25 Score=195.67 Aligned_cols=236 Identities=23% Similarity=0.309 Sum_probs=178.8
Q ss_pred cCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceE
Q 039650 19 RLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNL 98 (391)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 98 (391)
..+++++|+++++.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3589999999999997 67778888999999999999988 88888899999999999999998 778889999999999
Q ss_pred EecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcC
Q 039650 99 HLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLD 178 (391)
Q Consensus 99 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 178 (391)
++++|...+..|..+... .....+..+++|+.|++++|.++ .+|..+..+++|+.|++.
T Consensus 156 ~L~~n~~~~~~p~~~~~~--------------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST--------------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214 (328)
T ss_dssp EEEEETTCCCCCSCSEEE--------------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEE
T ss_pred ECCCCCCccccChhHhhc--------------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEcc
Confidence 999987765555443321 11233556788888888888777 566667778888888888
Q ss_pred CCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCcc
Q 039650 179 TNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSI 258 (391)
Q Consensus 179 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 258 (391)
+|.+.. .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..
T Consensus 215 ~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 215 NSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp SSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 887773 4445777777888888777766666666667777777777776665566666667777777777777666666
Q ss_pred CccccCCCCccEEEccCCccc
Q 039650 259 PLALGNLTKLVVLYLSINKLS 279 (391)
Q Consensus 259 ~~~~~~~~~L~~l~l~~~~~~ 279 (391)
|..+..+++++.+.+..+.+.
T Consensus 294 P~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGSC
T ss_pred cHHHhhccCceEEeCCHHHHH
Confidence 667777777777766655443
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=3.7e-29 Score=238.23 Aligned_cols=353 Identities=14% Similarity=0.109 Sum_probs=219.5
Q ss_pred hhcCCcccEEeecCCcCCCCCCCCCC-CCCCccEEecCCc-ccccC-ChhhhhcCCCCCEEEeeCCccCCCCcccc----
Q 039650 17 IGRLSSFNGLSLYSNFLKGSIPPSLG-NLTSLSYIGISNN-LLSGS-IPNEVESLKSLSDLRLYNNTLKGSIPSSL---- 89 (391)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 89 (391)
...+++|++|+++++.+.+..+..+. .+++|++|++++| .+... ++.....+++|++|++++|.+++..+..+
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 45678888888888876654444443 5788888888887 34322 34444578888888888887665443333
Q ss_pred cCCCCCceEEecccccccccchhh----cccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCC--------
Q 039650 90 GNLTNLVNLHLHINALSGLIPDEI----RNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNT-------- 157 (391)
Q Consensus 90 ~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------- 157 (391)
..+++|++|+++++. .......+ .++++|+.|.+.. +.....++..+..+++|+.|++..+.
T Consensus 181 ~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~-----~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR-----AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp TTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT-----TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred hcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC-----CCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence 356688888888775 11212222 3346666554432 21111134444555666666544331
Q ss_pred ------------------CC----CCCCCCcCCCCCccEEEcCCCcCCCCC-CccccCCCcccEEEccCCCCCCCccc-c
Q 039650 158 ------------------LS----GSIPYSFGNLTKLVTLYLDTNALSGSI-PDEIRNLKSLFNLQLDNNTLSGSIPL-S 213 (391)
Q Consensus 158 ------------------~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~-~ 213 (391)
+. ..++..+..+++|++|++.+|.+.+.. ...+..+++|+.|++.+| +.+.... .
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 11 112222234678888888888755321 123457788888888877 3222222 2
Q ss_pred ccCCCcccEEEccC---------cccccccchhh-ccCCCCCEEEcCCCcccCccCcccc-CCCCccEEEcc--C----C
Q 039650 214 LGNLTNLTTLYFSM---------NALSGSIPNEI-TNLRSLSDLQLSENTLNGSIPLALG-NLTKLVVLYLS--I----N 276 (391)
Q Consensus 214 ~~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~--~----~ 276 (391)
...+++|+.|++.+ +.++......+ ..+++|+.|.+..+.+++.....+. .+++|++|+++ + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 22478888888843 23332222223 2478888887777766543333333 57899999998 3 3
Q ss_pred ccccc-----cccccccCCcccEEEcCCCccCchhhHhhhC-CCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCc
Q 039650 277 KLSGS-----ISLSYASLTSLTNLYLYENSLCDSIQKEIGD-MKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNH 350 (391)
Q Consensus 277 ~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~ 350 (391)
.++.. ....+..+++|+.|++++ .+.+.....+.. +++|+.|++++|.+++..+..+...+++|++|++++|+
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 44421 112255678999999977 665555555554 89999999999999888777775556699999999999
Q ss_pred ccCCCcc-cccCCccccEEEcccccccc
Q 039650 351 IVGEIPL-GHGKFSSLIQLILTNNELSG 377 (391)
Q Consensus 351 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 377 (391)
+++.... ....+++|++|++++|+++.
T Consensus 493 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 493 FGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp CCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 8654433 44568999999999998854
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.5e-24 Score=198.41 Aligned_cols=246 Identities=24% Similarity=0.247 Sum_probs=128.1
Q ss_pred ccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhce
Q 039650 47 LSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNY 126 (391)
Q Consensus 47 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 126 (391)
.+.++..+..+. .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.+....+..|.++++|+ .
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~-----~ 116 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN-----T 116 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCC-----E
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCC-----E
Confidence 344454444443 3443322 3455555555555544444555555555555555554433333222222222 1
Q ss_pred eeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCc-CCCCCCccccCCCcccEEEccCCC
Q 039650 127 LIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNA-LSGSIPDEIRNLKSLFNLQLDNNT 205 (391)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~ 205 (391)
+.+..+.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++.++. +.......+..+++|+.|++++|.
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 1111122222233345556666666666666654445556666666666666533 222223345566666666666666
Q ss_pred CCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccc
Q 039650 206 LSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLS 285 (391)
Q Consensus 206 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 285 (391)
+.. .+ .+..+++|+.|++++|.+....+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.......
T Consensus 197 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 197 LRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp CSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred Ccc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 552 22 3455566666666666655555555566666666666666665555555556666666666666665555555
Q ss_pred cccCCcccEEEcCCCcc
Q 039650 286 YASLTSLTNLYLYENSL 302 (391)
Q Consensus 286 ~~~~~~L~~L~l~~~~~ 302 (391)
+..+++|+.|++++|++
T Consensus 275 ~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSCTTCCEEECCSSCE
T ss_pred hccccCCCEEEcCCCCc
Confidence 55556666666666554
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=9.1e-25 Score=191.50 Aligned_cols=234 Identities=22% Similarity=0.279 Sum_probs=140.9
Q ss_pred CCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccchhhhh
Q 039650 45 TSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIY 124 (391)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 124 (391)
+++++|+++++.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~------------------ 140 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR------------------ 140 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC------------------
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc------------------
Confidence 44555555555544 44444444555555555555554 44444555555555555554443
Q ss_pred ceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCC
Q 039650 125 NYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNN 204 (391)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 204 (391)
.++..++++++|+.|++++|.+.+..+..+.. . .....+..+++|+.|++++|
T Consensus 141 ------------~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 141 ------------ALPASIASLNRLRELSIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp ------------CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEE
T ss_pred ------------cCcHHHhcCcCCCEEECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCC
Confidence 11233444555555555554444344333321 0 00011334666777777776
Q ss_pred CCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccccc
Q 039650 205 TLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISL 284 (391)
Q Consensus 205 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 284 (391)
.+. ..+..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 194 ~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 194 GIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred CcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 665 455556667777777777776663 344566777777777777777666777777777788888887777666666
Q ss_pred ccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCccc
Q 039650 285 SYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN 327 (391)
Q Consensus 285 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 327 (391)
.+..+++|+.|++++|.+....+..+..+++++.+.+..+.+.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 6777778888888887777777777777888888877766543
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=9.6e-25 Score=200.42 Aligned_cols=229 Identities=21% Similarity=0.162 Sum_probs=185.0
Q ss_pred CCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEc
Q 039650 146 KSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYF 225 (391)
Q Consensus 146 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 225 (391)
++++.|++++|.+....+..|..+++|+.|++.+|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57888888888888777778888888888888888887666677888888888888888887555566778888999999
Q ss_pred cCcccccccchhhccCCCCCEEEcCCC-cccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCc
Q 039650 226 SMNALSGSIPNEITNLRSLSDLQLSEN-TLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCD 304 (391)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 304 (391)
++|.+.......|..+++|+.|+++++ .+.......+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcc
Confidence 888887666677888888999999884 444344456788889999999998887542 46678889999999998888
Q ss_pred hhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEcccccccc
Q 039650 305 SIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSG 377 (391)
Q Consensus 305 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 377 (391)
..+..+..+++|+.|++++|++++..+..+..+. +|+.|++++|++++..+..+..+++|+.|++++|++..
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCC-CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 7778888889999999999988877676666665 89999999998886666777888999999999987653
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.4e-24 Score=197.81 Aligned_cols=246 Identities=22% Similarity=0.217 Sum_probs=132.3
Q ss_pred ccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecc
Q 039650 23 FNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHI 102 (391)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 102 (391)
.+.++.++..+. ..|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 355666655554 3443332 4677777777766655566666777777777777776655556677777777777777
Q ss_pred cccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCC-CCCCCCCCCcCCCCCccEEEcCCCc
Q 039650 103 NALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYN-TLSGSIPYSFGNLTKLVTLYLDTNA 181 (391)
Q Consensus 103 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 181 (391)
|.+....+..|..+++|+ .+.+..+.+....+..+.++++|+.|+++++ .+....+..+..+++|+.|++.+|.
T Consensus 133 n~l~~~~~~~~~~l~~L~-----~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLR-----ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp SCCSBCCTTTSSSCTTCC-----EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhhhcccCCCC-----EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 766655444444444444 2222333333333444555555555555553 2222222344455555555555555
Q ss_pred CCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCcc
Q 039650 182 LSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLA 261 (391)
Q Consensus 182 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 261 (391)
+... ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+.+..+..
T Consensus 208 l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 208 IKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred cccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 5422 12444555555555555554444444555555555555555554444444555555555555555555444444
Q ss_pred ccCCCCccEEEccCCcc
Q 039650 262 LGNLTKLVVLYLSINKL 278 (391)
Q Consensus 262 ~~~~~~L~~l~l~~~~~ 278 (391)
+..+++|+.+++++|.+
T Consensus 286 ~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp STTCTTCCEEECCSSCE
T ss_pred hccccCCCEEEccCCCc
Confidence 45555555555555544
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.9e-24 Score=196.54 Aligned_cols=247 Identities=24% Similarity=0.248 Sum_probs=176.2
Q ss_pred ccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecc
Q 039650 23 FNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHI 102 (391)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 102 (391)
.+.++.++..+. .+|..+. +++++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 445555555554 3444332 5566677777666655555666666777777777666655556666677777777777
Q ss_pred cccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCC-CCCCCCCCcCCCCCccEEEcCCCc
Q 039650 103 NALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNT-LSGSIPYSFGNLTKLVTLYLDTNA 181 (391)
Q Consensus 103 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 181 (391)
|.+....+..|..+++|+ .+.+..+.+....+..|.++++|+.|+++++. +....+..+..+++|+.|++.+|.
T Consensus 122 n~l~~~~~~~~~~l~~L~-----~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLK-----ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp SCCSSCCTTTSCSCSSCC-----EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred CcCCeeCHhHhhccccCc-----eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 766666556666666666 33444455555556677788888888888753 443344467788888888888888
Q ss_pred CCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCcc
Q 039650 182 LSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLA 261 (391)
Q Consensus 182 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 261 (391)
+... + .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..
T Consensus 197 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 197 LREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp CSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred Cccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 8733 2 4677888888888888887666777888888889998888888777778888888999999988888777777
Q ss_pred ccCCCCccEEEccCCccc
Q 039650 262 LGNLTKLVVLYLSINKLS 279 (391)
Q Consensus 262 ~~~~~~L~~l~l~~~~~~ 279 (391)
+..+++|+.+++++|.+.
T Consensus 275 ~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSSCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEcCCCCcc
Confidence 788888999999888765
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=5.9e-25 Score=189.39 Aligned_cols=239 Identities=25% Similarity=0.262 Sum_probs=193.8
Q ss_pred CCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCC-CCCCccccccCCCcccEE
Q 039650 145 LKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNT-LSGSIPLSLGNLTNLTTL 223 (391)
Q Consensus 145 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L 223 (391)
.++++.|+++++.++...+..+..+++|++|++.+|.+....+..+..+++|+.|++++|. +....+..+..+++|+.|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4689999999999887666778889999999999998886667788889999999999997 665556778889999999
Q ss_pred EccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccC
Q 039650 224 YFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLC 303 (391)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 303 (391)
++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999888777788888999999999999988766677888999999999999988766667888899999999999998
Q ss_pred chhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccccCCCccc
Q 039650 304 DSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPEL 383 (391)
Q Consensus 304 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 383 (391)
...+..+..+++|+.|++++|.+++..+..+..+. +|+.|++++|++...-. ..+-...++.+..+.+.+.+..|+.+
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~~~-~~~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR-ALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT-TCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGG
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc-ccCEEeccCCCccCCCC-cHHHHHHHHhcccccCccccCCchHh
Confidence 77778888999999999999999876666666655 89999999998874322 11222345555666777776777655
Q ss_pred cc
Q 039650 384 GS 385 (391)
Q Consensus 384 ~~ 385 (391)
..
T Consensus 269 ~g 270 (285)
T 1ozn_A 269 AG 270 (285)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.6e-27 Score=224.55 Aligned_cols=373 Identities=14% Similarity=0.122 Sum_probs=248.1
Q ss_pred hhhhhcCCcccEEeecCCcCCC---CCCCC------------CCCCCCccEEecCCcccccCChhhhh-cCCCCCEEEee
Q 039650 14 PHEIGRLSSFNGLSLYSNFLKG---SIPPS------------LGNLTSLSYIGISNNLLSGSIPNEVE-SLKSLSDLRLY 77 (391)
Q Consensus 14 ~~~~~~~~~L~~L~l~~~~~~~---~~~~~------------~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~ 77 (391)
...+.++++|++|+++++.... ..|.. ...+++|++|++++|.+.+..+..+. .+++|++|++.
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 3456789999999999974221 11111 24688999999999988766666665 68999999999
Q ss_pred CC-ccCCC-CcccccCCCCCceEEecccccccccchhhc----ccccchhhhhceeeecccccc-ccccccccCCCCCCE
Q 039650 78 NN-TLKGS-IPSSLGNLTNLVNLHLHINALSGLIPDEIR----NLEFLSDLIYNYLIYWINALS-DLIPNEIGNLKSLSD 150 (391)
Q Consensus 78 ~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~~~~~L~~ 150 (391)
+| .+... ++..+..+++|++|++++|.+.+..+..+. .+++|+.|.+.... ..+. ..+......+++|+.
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~l~~l~~~~~~L~~ 215 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA---SEVSFSALERLVTRCPNLKS 215 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC---SCCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC---CcCCHHHHHHHHHhCCCCcE
Confidence 98 44422 344555899999999999988766554444 55577766554332 0111 112233345799999
Q ss_pred EECCCCCCCCCCCCCcCCCCCccEEEcCCCcC--------------------------CCC----CCccccCCCcccEEE
Q 039650 151 LRLDYNTLSGSIPYSFGNLTKLVTLYLDTNAL--------------------------SGS----IPDEIRNLKSLFNLQ 200 (391)
Q Consensus 151 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------------~~~----~~~~l~~~~~L~~L~ 200 (391)
|++++|......+..+..+++|+.|++..+.. ... .+..+..+++|+.|+
T Consensus 216 L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~ 295 (594)
T 2p1m_B 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295 (594)
T ss_dssp EECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEE
T ss_pred EecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEE
Confidence 99998832222444556677788887654421 111 122223568899999
Q ss_pred ccCCCCCCCc-cccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCC---------cccCccCccc-cCCCCcc
Q 039650 201 LDNNTLSGSI-PLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSEN---------TLNGSIPLAL-GNLTKLV 269 (391)
Q Consensus 201 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~---------~~~~~~~~~~-~~~~~L~ 269 (391)
+++|.+.+.. ...+..+++|+.|++.+|............+++|+.|++.++ .+++.....+ ..+++|+
T Consensus 296 L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~ 375 (594)
T 2p1m_B 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375 (594)
T ss_dssp CTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCC
T ss_pred ccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHH
Confidence 9988865322 222457889999999887222122223345889999998442 3322111122 3478999
Q ss_pred EEEccCCccccccccccc-cCCcccEEEcC--C----CccCc-----hhhHhhhCCCCccEEEcCCCcccchhHHHHHHh
Q 039650 270 VLYLSINKLSGSISLSYA-SLTSLTNLYLY--E----NSLCD-----SIQKEIGDMKSLSILDLSSNKLNGSILLSLANL 337 (391)
Q Consensus 270 ~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 337 (391)
+|.+..+.+++.....+. .+++|+.|+++ + +.++. .....+..+++|+.|++++ .+++..+..+...
T Consensus 376 ~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY 454 (594)
T ss_dssp EEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred HHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence 998888888754444443 58999999998 3 34442 2223467889999999988 7888888888776
Q ss_pred hccccEEEcCCCcccCCCcccc-cCCccccEEEccccccccCCC-ccccccCCCc
Q 039650 338 TNSLKVLYLSSNHIVGEIPLGH-GKFSSLIQLILTNNELSGQLS-PELGSLIQLE 390 (391)
Q Consensus 338 ~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 390 (391)
.++|+.|++++|.+++.....+ ..+++|++|++++|+++...+ .....+++|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 6699999999999876655555 679999999999999865433 3444466665
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.6e-25 Score=195.76 Aligned_cols=232 Identities=24% Similarity=0.191 Sum_probs=129.7
Q ss_pred ccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCccc
Q 039650 142 IGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLT 221 (391)
Q Consensus 142 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 221 (391)
+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.. +...++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcC
Confidence 3344566666666666655444556666666666666666543222 5566666666666665541 12235666
Q ss_pred EEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccccccc-ccCCcccEEEcCCC
Q 039650 222 TLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSY-ASLTSLTNLYLYEN 300 (391)
Q Consensus 222 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 300 (391)
.|++++|.+...... .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 666666655533222 24556666666666665555555566666666666666654443333 24566666666666
Q ss_pred ccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccc-cCC
Q 039650 301 SLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELS-GQL 379 (391)
Q Consensus 301 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~ 379 (391)
.+.... ....+++|+.|++++|++++.. ..+.... +|+.|++++|+++ .++..+..+++|+.|++++|++. +.+
T Consensus 180 ~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 180 FIYDVK--GQVVFAKLKTLDLSSNKLAFMG-PEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp CCCEEE--CCCCCTTCCEEECCSSCCCEEC-GGGGGGT-TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred cCcccc--cccccccCCEEECCCCcCCcch-hhhcccC-cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH
Confidence 664432 1223566666666666665332 2343333 6666666666666 45555666666666666666665 344
Q ss_pred CccccccCC
Q 039650 380 SPELGSLIQ 388 (391)
Q Consensus 380 ~~~~~~~~~ 388 (391)
|..+..+++
T Consensus 255 ~~~~~~~~~ 263 (317)
T 3o53_A 255 RDFFSKNQR 263 (317)
T ss_dssp HHHHHTCHH
T ss_pred HHHHhcccc
Confidence 444444433
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=5.4e-25 Score=192.39 Aligned_cols=262 Identities=21% Similarity=0.211 Sum_probs=155.6
Q ss_pred cEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhcee
Q 039650 48 SYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYL 127 (391)
Q Consensus 48 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 127 (391)
+..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------------------ 74 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL------------------ 74 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE------------------
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch------------------
Confidence 33444444433222223334445555555555555444455555555555555555543210
Q ss_pred eeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCC
Q 039650 128 IYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLS 207 (391)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 207 (391)
.+..+++|+.|++++|.++... ..++|+.|++.+|.+....+ ..+++|+.|++++|.+.
T Consensus 75 -------------~~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 75 -------------DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKIT 133 (317)
T ss_dssp -------------EETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCC
T ss_pred -------------hhhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCC
Confidence 0334455555555555443211 22455555555555543222 22455666666666665
Q ss_pred CCccccccCCCcccEEEccCcccccccchhh-ccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccccccc
Q 039650 208 GSIPLSLGNLTNLTTLYFSMNALSGSIPNEI-TNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSY 286 (391)
Q Consensus 208 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 286 (391)
...+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+.+.. ....+++|++|++++|.+.+... .+
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~ 210 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EF 210 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GG
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hh
Confidence 4444455566677777777776655444444 35678888888888776432 22347888888888888875433 36
Q ss_pred ccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCccc-chhHHHHHHhhccccEEEcCCC-cccC
Q 039650 287 ASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN-GSILLSLANLTNSLKVLYLSSN-HIVG 353 (391)
Q Consensus 287 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~~-~~~~ 353 (391)
..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+. +..+.++..+. +|+.++++++ .+.+
T Consensus 211 ~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~-~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQTVKKLTG 277 (317)
T ss_dssp GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH-HHHHHHHHHHHHHHS
T ss_pred cccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc-cceEEECCCchhccC
Confidence 778888889998888865 3455778889999999999888 55566666555 8888888855 3443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4e-23 Score=194.53 Aligned_cols=265 Identities=25% Similarity=0.254 Sum_probs=179.6
Q ss_pred CcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEe
Q 039650 21 SSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHL 100 (391)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 100 (391)
.++++|+++++.+. .+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46899999999987 5666554 79999999999887 5555 5788999999999888 4444 6788999999
Q ss_pred cccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCC
Q 039650 101 HINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTN 180 (391)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 180 (391)
++|.+... +. .+++|+.|++++|.++. ++.. +++|++|++.+|
T Consensus 109 s~N~l~~l------------------------------~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N 151 (622)
T 3g06_A 109 FSNPLTHL------------------------------PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDN 151 (622)
T ss_dssp CSCCCCCC------------------------------CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred cCCcCCCC------------------------------CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCC
Confidence 99877632 11 34778899999888874 3332 478888888888
Q ss_pred cCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCc
Q 039650 181 ALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPL 260 (391)
Q Consensus 181 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 260 (391)
.+... +. .+++|+.|++++|.+.. .+ ..+++|+.|++++|.++.. +. ..++|+.|++++|.+.. .+.
T Consensus 152 ~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~ 218 (622)
T 3g06_A 152 QLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA 218 (622)
T ss_dssp CCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC
T ss_pred cCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC
Confidence 87642 22 34678888888887763 33 3457778888877776632 21 23677777777777663 222
Q ss_pred cccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhcc
Q 039650 261 ALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNS 340 (391)
Q Consensus 261 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 340 (391)
.+++|++|++++|.+.... ..+++|+.|++++|.+...+. .+++|+.|++++|.++ .+|..+..++ +
T Consensus 219 ---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~-~ 285 (622)
T 3g06_A 219 ---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLS-S 285 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGGSC-T
T ss_pred ---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhhcc-c
Confidence 2366777777777666422 344667777777776654322 4566777777777666 4455555444 6
Q ss_pred ccEEEcCCCcccCCCcccc
Q 039650 341 LKVLYLSSNHIVGEIPLGH 359 (391)
Q Consensus 341 L~~L~l~~~~~~~~~~~~~ 359 (391)
|+.|++++|++.+..+..+
T Consensus 286 L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp TCEEECCSCCCCHHHHHHH
T ss_pred cCEEEecCCCCCCcCHHHH
Confidence 6777777776665544433
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.7e-24 Score=198.47 Aligned_cols=231 Identities=24% Similarity=0.200 Sum_probs=182.3
Q ss_pred CCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEE
Q 039650 144 NLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTL 223 (391)
Q Consensus 144 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 223 (391)
.+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.. +...++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-----EEECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-----CCCCCCcCEE
Confidence 45689999999998887777788889999999999998864433 7888999999999987762 2234889999
Q ss_pred EccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccc-cCCcccEEEcCCCcc
Q 039650 224 YFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYA-SLTSLTNLYLYENSL 302 (391)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 302 (391)
++++|.+....+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999988754433 457899999999998877777888899999999999998876666654 688999999999998
Q ss_pred CchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccc-cCCCc
Q 039650 303 CDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELS-GQLSP 381 (391)
Q Consensus 303 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~ 381 (391)
.... ....+++|+.|++++|.+++..+ .+..++ +|+.|++++|.++ .+|..+..+++|+.|++++|++. +.+|.
T Consensus 182 ~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 182 YDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGT-TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCC-CccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 6653 23468899999999999986444 455554 8999999999988 47777888899999999999887 45566
Q ss_pred cccccCCC
Q 039650 382 ELGSLIQL 389 (391)
Q Consensus 382 ~~~~~~~L 389 (391)
.+..++.|
T Consensus 257 ~~~~l~~L 264 (487)
T 3oja_A 257 FFSKNQRV 264 (487)
T ss_dssp HHTTCHHH
T ss_pred HHHhCCCC
Confidence 66555543
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=7.3e-22 Score=185.97 Aligned_cols=265 Identities=26% Similarity=0.359 Sum_probs=207.7
Q ss_pred CcccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc
Q 039650 1 LLSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT 80 (391)
Q Consensus 1 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 80 (391)
+|++++|+++.+ +..+. ++|++|++++|.+.. +|. .+++|++|++++|.+. .+|. .+++|++|++++|.
T Consensus 44 ~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 44 VLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp EEECCSSCCSCC-CSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCC
T ss_pred EEEecCCCcCcc-ChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCc
Confidence 378899999844 44433 799999999999884 554 5799999999999987 5665 67899999999999
Q ss_pred cCCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCC
Q 039650 81 LKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSG 160 (391)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 160 (391)
+++ ++. .+++|++|++++|.+... +. .+++|+.|++++|.++.
T Consensus 113 l~~-l~~---~l~~L~~L~L~~N~l~~l------------------------------p~---~l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 113 LTH-LPA---LPSGLCKLWIFGNQLTSL------------------------------PV---LPPGLQELSVSDNQLAS 155 (622)
T ss_dssp CCC-CCC---CCTTCCEEECCSSCCSCC------------------------------CC---CCTTCCEEECCSSCCSC
T ss_pred CCC-CCC---CCCCcCEEECCCCCCCcC------------------------------CC---CCCCCCEEECcCCcCCC
Confidence 884 444 568999999999987632 11 13789999999998874
Q ss_pred CCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhcc
Q 039650 161 SIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITN 240 (391)
Q Consensus 161 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 240 (391)
++. .+++|+.|++.+|.+... + ..+++|+.|++++|.+.. .+. ..++|+.|++.+|.++.. +. .
T Consensus 156 -l~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~---~ 219 (622)
T 3g06_A 156 -LPA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PA---L 219 (622)
T ss_dssp -CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CC---C
T ss_pred -cCC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CC---C
Confidence 332 357899999999988743 3 456889999999998873 332 347899999999988733 22 3
Q ss_pred CCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEE
Q 039650 241 LRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILD 320 (391)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 320 (391)
+++|+.|++++|.+.+ .+ ..+++|+.|++++|.+..... .+++|+.|++++|.+.. .+..+..+++|+.|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVN 290 (622)
T ss_dssp CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEE
T ss_pred CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCc-CCHHHhhccccCEEE
Confidence 4789999999998875 33 456899999999999885433 56899999999999974 456788999999999
Q ss_pred cCCCcccchhHHHHHHhh
Q 039650 321 LSSNKLNGSILLSLANLT 338 (391)
Q Consensus 321 l~~~~i~~~~~~~~~~~~ 338 (391)
+++|.+++..+..+....
T Consensus 291 L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 291 LEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSCCCCHHHHHHHHHHH
T ss_pred ecCCCCCCcCHHHHHhcc
Confidence 999999988888776654
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.5e-24 Score=189.13 Aligned_cols=256 Identities=18% Similarity=0.142 Sum_probs=149.6
Q ss_pred hhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccc-cCChhhhh-------cCCCCCEEEeeCCccCCCCccc
Q 039650 17 IGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLS-GSIPNEVE-------SLKSLSDLRLYNNTLKGSIPSS 88 (391)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~ 88 (391)
+...++|+.+++++|.+ ..|..+... |++|+++++.+. ...+..+. .+++|++|++++|.+.+..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34556677777777766 344433332 777777777663 23444433 5677777777777777666665
Q ss_pred c--cCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCc
Q 039650 89 L--GNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSF 166 (391)
Q Consensus 89 ~--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 166 (391)
+ ..+++|++|++++|.+... +..+..+.. ...++|++|++++|.+....+..+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~------------------------~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ------------------------WLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT------------------------TCCTTCCEEEEESCSCCCCCTTTC
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHH------------------------hhcCCCcEEEeeCCCCccchHHHh
Confidence 4 6677777777777776644 322221110 012566666666666665555566
Q ss_pred CCCCCccEEEcCCCcCCCC--CCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCccccc---ccchhhccC
Q 039650 167 GNLTKLVTLYLDTNALSGS--IPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSG---SIPNEITNL 241 (391)
Q Consensus 167 ~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~ 241 (391)
..+++|+.|++++|.+... .+..+ .+..+++|+.|++++|.++. .....+..+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISAL----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHS----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHH----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 6666666666666654321 01111 11334455555555554431 112233455
Q ss_pred CCCCEEEcCCCcccCccC-ccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEE
Q 039650 242 RSLSDLQLSENTLNGSIP-LALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILD 320 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 320 (391)
++|+.|++++|.+.+..+ ..+..+++|++|++++|.++ ..+..+. ++|+.|++++|.+... +. +..+++|+.|+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS 302 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence 677777777777665442 34455677777777777776 3333333 6788888888877655 22 67778888888
Q ss_pred cCCCcccc
Q 039650 321 LSSNKLNG 328 (391)
Q Consensus 321 l~~~~i~~ 328 (391)
+++|++++
T Consensus 303 L~~N~l~~ 310 (312)
T 1wwl_A 303 LKGNPFLD 310 (312)
T ss_dssp CTTCTTTC
T ss_pred ccCCCCCC
Confidence 88887764
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=6.5e-24 Score=195.93 Aligned_cols=235 Identities=21% Similarity=0.172 Sum_probs=141.9
Q ss_pred CCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEE
Q 039650 20 LSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLH 99 (391)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 99 (391)
+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. + ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 3477788887777776666777777777888877777664443 66677777777777766632 2 226777777
Q ss_pred ecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCC
Q 039650 100 LHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDT 179 (391)
Q Consensus 100 l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 179 (391)
+++|.+....+ ..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 106 L~~N~l~~~~~--------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 106 AANNNISRVSC--------------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp CCSSCCCCEEE--------------------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred CcCCcCCCCCc--------------------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence 77776653211 1235677777777776655555666667777777777
Q ss_pred CcCCCCCCcccc-CCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCcc
Q 039650 180 NALSGSIPDEIR-NLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSI 258 (391)
Q Consensus 180 ~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 258 (391)
|.+....+..+. .+++|+.|++++|.+... .....+++|+.|++++|.++.. +..+..+++|+.|++++|.+.+ .
T Consensus 154 N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-I 229 (487)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-E
T ss_pred CCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-c
Confidence 766654444443 566777777777666532 2223456666666666666533 2235556666666666666652 3
Q ss_pred CccccCCCCccEEEccCCccc-cccccccccCCcccEEEc
Q 039650 259 PLALGNLTKLVVLYLSINKLS-GSISLSYASLTSLTNLYL 297 (391)
Q Consensus 259 ~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l 297 (391)
+..+..+++|+.+++++|.+. +..+..+..++.++.+++
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 444555566666666666555 223333444444444444
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.5e-22 Score=173.46 Aligned_cols=206 Identities=21% Similarity=0.195 Sum_probs=120.2
Q ss_pred CccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcC
Q 039650 171 KLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLS 250 (391)
Q Consensus 171 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 250 (391)
++++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554433445555555555555555543333345555666666666665554444555666666666666
Q ss_pred CCcccCccCccccCCCCccEEEccCCccccc-cccccccCCcccEEEcCCCccCchhhHhhhCCCCcc----EEEcCCCc
Q 039650 251 ENTLNGSIPLALGNLTKLVVLYLSINKLSGS-ISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLS----ILDLSSNK 325 (391)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~ 325 (391)
+|.+.+..+..+..+++|++|++++|.+... .+..+..+++|+.|++++|.+.......+..+++|+ .+++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666544444566666666666666666543 245556666677777777666554444444444444 67777777
Q ss_pred ccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccccC
Q 039650 326 LNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQ 378 (391)
Q Consensus 326 i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 378 (391)
+++..+..+ ... +|++|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus 189 l~~~~~~~~-~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 189 MNFIQPGAF-KEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEECTTSS-CSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccccCcccc-CCC-cccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 664333222 222 677777777777755555566777777777777776643
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.1e-21 Score=167.32 Aligned_cols=203 Identities=28% Similarity=0.310 Sum_probs=162.3
Q ss_pred CCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEc
Q 039650 146 KSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYF 225 (391)
Q Consensus 146 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 225 (391)
...+.++++++.++. +|..+. ++++.|++.+|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 357889999888873 454443 67999999999988766667889999999999999887555556678889999999
Q ss_pred cCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCch
Q 039650 226 SMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDS 305 (391)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 305 (391)
++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+...
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99888866667778888999999999888877777788888999999999888876666677888888888888888776
Q ss_pred hhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCccc
Q 039650 306 IQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 306 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~ 352 (391)
....+..+++|+.|++++|++++..+..+..+. +|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE-KLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhcccc-CCCEEEecCCCee
Confidence 666777888888888888888754444454444 7888888888765
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.2e-22 Score=170.86 Aligned_cols=212 Identities=24% Similarity=0.244 Sum_probs=156.3
Q ss_pred ccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCccc
Q 039650 142 IGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLT 221 (391)
Q Consensus 142 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 221 (391)
...+++|+.|+++++.+... ..+..+++|+.|++.+|.+... ..+..+++|+.|++++|.+....+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 44567888888888877632 3577788888888888887642 3677888888888888887755555567778888
Q ss_pred EEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCc
Q 039650 222 TLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENS 301 (391)
Q Consensus 222 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 301 (391)
.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 88888887776666667777888888888887776666666777888888888887776666666777788888888887
Q ss_pred cCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccc
Q 039650 302 LCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSL 365 (391)
Q Consensus 302 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 365 (391)
+....+..+..+++|+.|++++|.+.+. +++++.+++++|.+++.+|..++.++..
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 7766666677778888888887776532 2356777777777777777766665443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=3.3e-21 Score=164.38 Aligned_cols=199 Identities=28% Similarity=0.292 Sum_probs=169.0
Q ss_pred eeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCC
Q 039650 127 LIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTL 206 (391)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 206 (391)
+....+.+.. +|..+ .++++.|+++++.+....+..+..+++|++|++.+|.+....+..+..+++|+.|++++|.+
T Consensus 21 l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 21 VDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 3334444443 33333 26899999999999877777899999999999999999866666778899999999999999
Q ss_pred CCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccccccc
Q 039650 207 SGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSY 286 (391)
Q Consensus 207 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 286 (391)
.......+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.......+
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence 86666677889999999999999987777888999999999999999987777778899999999999999987777778
Q ss_pred ccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccc
Q 039650 287 ASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG 328 (391)
Q Consensus 287 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 328 (391)
..+++|+.|++++|.+.......+..+++|+.|++++|.+..
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 889999999999999987777778899999999999998753
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=5.8e-22 Score=172.74 Aligned_cols=224 Identities=21% Similarity=0.189 Sum_probs=148.7
Q ss_pred cccccCccCC-Cchhhhh-------cCCcccEEeecCCcCCCCCCCCC--CCCCCccEEecCCcccccCChhhhhcC---
Q 039650 2 LSFSKNQLSG-LIPHEIG-------RLSSFNGLSLYSNFLKGSIPPSL--GNLTSLSYIGISNNLLSGSIPNEVESL--- 68 (391)
Q Consensus 2 l~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~--- 68 (391)
|++++|.+.. ..+..+. ++++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+. |..+..+
T Consensus 68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~ 146 (312)
T 1wwl_A 68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW 146 (312)
T ss_dssp CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT
T ss_pred cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh
Confidence 5666666642 2333332 57777777777777766666654 6777777777777777644 5555554
Q ss_pred --CCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCC
Q 039650 69 --KSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLK 146 (391)
Q Consensus 69 --~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~ 146 (391)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .....+..++
T Consensus 147 ~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------------------------~~~~~~~~l~ 201 (312)
T 1wwl_A 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL-------------------------ISALCPLKFP 201 (312)
T ss_dssp CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH-------------------------HHHSCTTSCT
T ss_pred hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH-------------------------HHHHHhccCC
Confidence 6777777777777766667777777777777777765421000 0011235677
Q ss_pred CCCEEECCCCCCCCC---CCCCcCCCCCccEEEcCCCcCCCCCC-ccccCCCcccEEEccCCCCCCCccccccCCCcccE
Q 039650 147 SLSDLRLDYNTLSGS---IPYSFGNLTKLVTLYLDTNALSGSIP-DEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTT 222 (391)
Q Consensus 147 ~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 222 (391)
+|+.|++++|.+... ....+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+. ..+..+. ++|+.
T Consensus 202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSV 278 (312)
T ss_dssp TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEE
T ss_pred CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceE
Confidence 888888888877621 11233456788888888888775543 34556788888888888877 4554444 78888
Q ss_pred EEccCcccccccchhhccCCCCCEEEcCCCcccC
Q 039650 223 LYFSMNALSGSIPNEITNLRSLSDLQLSENTLNG 256 (391)
Q Consensus 223 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 256 (391)
|++++|.++.. +. +..+++|+.|++++|.+++
T Consensus 279 L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 279 LDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88888888755 44 7778888888888887753
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.2e-23 Score=189.24 Aligned_cols=267 Identities=19% Similarity=0.212 Sum_probs=151.7
Q ss_pred CChhhhhcCCCCCEEEeeCCccCCCCc----ccccCCCCCceEEecccccccc---cchhhcccccchhhhhceeeeccc
Q 039650 60 SIPNEVESLKSLSDLRLYNNTLKGSIP----SSLGNLTNLVNLHLHINALSGL---IPDEIRNLEFLSDLIYNYLIYWIN 132 (391)
Q Consensus 60 ~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~l~l~~~~~~~~ 132 (391)
.++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+... .|..+.
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~------------------ 84 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR------------------ 84 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH------------------
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH------------------
Confidence 455556666677777777776654322 3355677777777776544321 121111
Q ss_pred cccccccccccCCCCCCEEECCCCCCCCC----CCCCcCCCCCccEEEcCCCcCCCCCCccc----cCC---------Cc
Q 039650 133 ALSDLIPNEIGNLKSLSDLRLDYNTLSGS----IPYSFGNLTKLVTLYLDTNALSGSIPDEI----RNL---------KS 195 (391)
Q Consensus 133 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~---------~~ 195 (391)
.+...+..+++|+.|++++|.+... ++..+..+++|+.|++.+|.+....+..+ ..+ ++
T Consensus 85 ----~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 85 ----LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160 (386)
T ss_dssp ----HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ----HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 1223456677788888887777642 34455667777777777777643222222 222 67
Q ss_pred ccEEEccCCCCCCCc-c---ccccCCCcccEEEccCcccccc-----cchhhccCCCCCEEEcCCCccc----CccCccc
Q 039650 196 LFNLQLDNNTLSGSI-P---LSLGNLTNLTTLYFSMNALSGS-----IPNEITNLRSLSDLQLSENTLN----GSIPLAL 262 (391)
Q Consensus 196 L~~L~l~~~~~~~~~-~---~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~ 262 (391)
|+.|++++|.+.+.. + ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.++ ...+..+
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 777777777665221 1 2344566677777776665421 1224556667777777777663 2344455
Q ss_pred cCCCCccEEEccCCccccc----ccccc--ccCCcccEEEcCCCccCc----hhhHhh-hCCCCccEEEcCCCcccchhH
Q 039650 263 GNLTKLVVLYLSINKLSGS----ISLSY--ASLTSLTNLYLYENSLCD----SIQKEI-GDMKSLSILDLSSNKLNGSIL 331 (391)
Q Consensus 263 ~~~~~L~~l~l~~~~~~~~----~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~i~~~~~ 331 (391)
..+++|++|++++|.+... .+..+ ..+++|+.|++++|.+.. ..+..+ .++++|+.|++++|.+++..+
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 6666777777777766543 12222 225667777777777655 233333 446777777777777765552
Q ss_pred --HHHHHhhccccEEEcCC
Q 039650 332 --LSLANLTNSLKVLYLSS 348 (391)
Q Consensus 332 --~~~~~~~~~L~~L~l~~ 348 (391)
..+....+.++.+++..
T Consensus 321 ~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 321 VVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHHHhhhcCcchhhh
Confidence 45555444555555443
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=2.9e-21 Score=165.43 Aligned_cols=60 Identities=22% Similarity=0.135 Sum_probs=26.9
Q ss_pred CccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEeccccc
Q 039650 46 SLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINAL 105 (391)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 105 (391)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 455555555544433333444444455555544444433333444444444444444433
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2e-21 Score=165.92 Aligned_cols=212 Identities=26% Similarity=0.247 Sum_probs=172.7
Q ss_pred CcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCC
Q 039650 165 SFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSL 244 (391)
Q Consensus 165 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 244 (391)
....+++|+.+++.++.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.++...+..+..+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 345678899999988887643 3477889999999999988742 467788999999999998887777778888999
Q ss_pred CEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCC
Q 039650 245 SDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSN 324 (391)
Q Consensus 245 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 324 (391)
+.|++++|.+.+..+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 99999999888777777888899999999999888776667788899999999999988777777788899999999999
Q ss_pred cccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccccccCCCccccccCC
Q 039650 325 KLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNELSGQLSPELGSLIQ 388 (391)
Q Consensus 325 ~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 388 (391)
++++..+..+..+. +|+.|++++|++. +.+++|+.++++.|.+.+.+|..++.++.
T Consensus 192 ~l~~~~~~~~~~l~-~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 192 QLKSVPDGVFDRLT-SLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCSCCCTTTTTTCT-TCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCCccCHHHHhCCc-CCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 98876665555555 8999999999766 34778888999999998888887776654
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=8.3e-23 Score=183.73 Aligned_cols=242 Identities=19% Similarity=0.191 Sum_probs=159.2
Q ss_pred ccccccCCCCCCEEECCCCCCCCC----CCCCcCCCCCccEEEcCCCcCCC---CCCcc-------ccCCCcccEEEccC
Q 039650 138 IPNEIGNLKSLSDLRLDYNTLSGS----IPYSFGNLTKLVTLYLDTNALSG---SIPDE-------IRNLKSLFNLQLDN 203 (391)
Q Consensus 138 ~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~---~~~~~-------l~~~~~L~~L~l~~ 203 (391)
++..+..+++|+.|++++|.+... ++..+..+++|+.|++++|.+.. ..+.. +..+++|+.|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 344556667788888887776543 22335567778888887764432 12222 35677888888888
Q ss_pred CCCCCC----ccccccCCCcccEEEccCcccccccchhh----ccC---------CCCCEEEcCCCcccC-ccC---ccc
Q 039650 204 NTLSGS----IPLSLGNLTNLTTLYFSMNALSGSIPNEI----TNL---------RSLSDLQLSENTLNG-SIP---LAL 262 (391)
Q Consensus 204 ~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~---------~~L~~L~l~~~~~~~-~~~---~~~ 262 (391)
|.+... .+..+..+++|+.|++++|.++...+..+ ..+ ++|+.|++++|.+.. ..+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 877652 34456677888888888877653333333 233 788888888887752 222 345
Q ss_pred cCCCCccEEEccCCccccc-----cccccccCCcccEEEcCCCccC----chhhHhhhCCCCccEEEcCCCcccchhHHH
Q 039650 263 GNLTKLVVLYLSINKLSGS-----ISLSYASLTSLTNLYLYENSLC----DSIQKEIGDMKSLSILDLSSNKLNGSILLS 333 (391)
Q Consensus 263 ~~~~~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 333 (391)
..+++|++|++++|.+... .+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+++.....
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 5677888888888877622 2225667788888888888875 344556677888888888888887664444
Q ss_pred HHHh-----hccccEEEcCCCcccC----CCcccc-cCCccccEEEccccccccCC
Q 039650 334 LANL-----TNSLKVLYLSSNHIVG----EIPLGH-GKFSSLIQLILTNNELSGQL 379 (391)
Q Consensus 334 ~~~~-----~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~ 379 (391)
+... .++|+.|++++|.+++ .++..+ .++++|++|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 3332 3478888888888876 255555 55788888888888887555
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.9e-22 Score=178.06 Aligned_cols=257 Identities=17% Similarity=0.206 Sum_probs=145.3
Q ss_pred CccEEecCCcccccCChhhhhcC--CCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccchhhh
Q 039650 46 SLSYIGISNNLLSGSIPNEVESL--KSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLI 123 (391)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 123 (391)
.++.++++++.+. +..+..+ +.++.++++++.+.+..+. +..+++|++|++++|.+...
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~--------------- 108 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS--------------- 108 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH---------------
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH---------------
Confidence 3666777666543 3344444 6677777777666644333 44566666666666654311
Q ss_pred hceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCC-cCCCCCCccccCCCcccEEEcc
Q 039650 124 YNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTN-ALSGSIPDEIRNLKSLFNLQLD 202 (391)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~ 202 (391)
..+..+..+++|+.|++++|.+++..+..+..+++|++|++.+| .+.+.
T Consensus 109 -------------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------- 158 (336)
T 2ast_B 109 -------------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------- 158 (336)
T ss_dssp -------------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------
T ss_pred -------------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------
Confidence 01233445566666666666554333444444555555555554 23211
Q ss_pred CCCCCCCccccccCCCcccEEEccCc-ccccc-cchhhccCC-CCCEEEcCCCc--cc-CccCccccCCCCccEEEccCC
Q 039650 203 NNTLSGSIPLSLGNLTNLTTLYFSMN-ALSGS-IPNEITNLR-SLSDLQLSENT--LN-GSIPLALGNLTKLVVLYLSIN 276 (391)
Q Consensus 203 ~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~l~l~~~ 276 (391)
..+..+..+++|+.|++++| .++.. .+..+..++ +|+.|++++|. +. +..+..+..+++|++|++++|
T Consensus 159 ------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 159 ------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp ------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred ------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 11222334455555555555 44322 233445566 66666666663 22 123344456677777777777
Q ss_pred c-cccccccccccCCcccEEEcCCCc-cCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCC
Q 039650 277 K-LSGSISLSYASLTSLTNLYLYENS-LCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGE 354 (391)
Q Consensus 277 ~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 354 (391)
. +++.....+..+++|+.|++++|. +.......+..+++|+.|++++| +++.....+. .++..|++++|++++.
T Consensus 233 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~---~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 233 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK---EALPHLQINCSHFTTI 308 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH---HHSTTSEESCCCSCCT
T ss_pred CcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH---hhCcceEEecccCccc
Confidence 6 554445556667788888888774 43333345677888888888888 6654444433 3567777888888877
Q ss_pred CcccccC
Q 039650 355 IPLGHGK 361 (391)
Q Consensus 355 ~~~~~~~ 361 (391)
.+..+.+
T Consensus 309 ~~~~~~~ 315 (336)
T 2ast_B 309 ARPTIGN 315 (336)
T ss_dssp TCSSCSS
T ss_pred cCCcccc
Confidence 6666654
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.1e-20 Score=162.40 Aligned_cols=204 Identities=26% Similarity=0.244 Sum_probs=164.8
Q ss_pred cccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcc
Q 039650 141 EIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNL 220 (391)
Q Consensus 141 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 220 (391)
.++++++++.++++++.++. +|..+. ++++.|++.+|.+....+..+..+++|+.|++++|.+... +. ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 35678899999999988874 444443 6899999999998866677888999999999999988733 22 3678899
Q ss_pred cEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCC
Q 039650 221 TTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYEN 300 (391)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 300 (391)
+.|++++|.+. ..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.......+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999887 45666778889999999999888777777888899999999999888777777778889999999999
Q ss_pred ccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCccc
Q 039650 301 SLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 301 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~ 352 (391)
.+...+...+..+++|+.|++++|+++ .+|..+.... +|+.+++++|++.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~-~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH-LLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc-cCCeEEeCCCCcc
Confidence 887777777788889999999999887 5566665555 7888999888765
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2.5e-22 Score=178.85 Aligned_cols=246 Identities=23% Similarity=0.238 Sum_probs=166.6
Q ss_pred cccccccccccCCCCCCEEECCCCCCCCCCC----CCcCCCC-CccEEEcCCCcCCCCCCccccCC-----CcccEEEcc
Q 039650 133 ALSDLIPNEIGNLKSLSDLRLDYNTLSGSIP----YSFGNLT-KLVTLYLDTNALSGSIPDEIRNL-----KSLFNLQLD 202 (391)
Q Consensus 133 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~ 202 (391)
.+.+.++..+...++|+.|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|+.|+++
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 3334445555555668888888888775544 5566677 78888888888876555555443 888888888
Q ss_pred CCCCCCCcccc----ccCC-CcccEEEccCcccccccchhhc----c-CCCCCEEEcCCCcccCccC----ccccCCC-C
Q 039650 203 NNTLSGSIPLS----LGNL-TNLTTLYFSMNALSGSIPNEIT----N-LRSLSDLQLSENTLNGSIP----LALGNLT-K 267 (391)
Q Consensus 203 ~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~L~l~~~~~~~~~~----~~~~~~~-~ 267 (391)
+|.+.+..... +... ++|+.|++++|.++......+. . +++|+.|++++|.+.+... ..+...+ +
T Consensus 89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 88876544443 3333 7888888888887765554433 3 3588888888888764332 2334454 8
Q ss_pred ccEEEccCCccccccccc----cccC-CcccEEEcCCCccCch----hhHhhhC-CCCccEEEcCCCcccchhHHHHHHh
Q 039650 268 LVVLYLSINKLSGSISLS----YASL-TSLTNLYLYENSLCDS----IQKEIGD-MKSLSILDLSSNKLNGSILLSLANL 337 (391)
Q Consensus 268 L~~l~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~i~~~~~~~~~~~ 337 (391)
|++|++++|.+++..... +..+ ++|+.|++++|.+... ....+.. .++|+.|++++|.+++..+..+...
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHH
Confidence 888888888887554433 2334 5888888888888652 2334444 4588888998888887666554432
Q ss_pred ---hccccEEEcCCCcccCC-------CcccccCCccccEEEccccccccC
Q 039650 338 ---TNSLKVLYLSSNHIVGE-------IPLGHGKFSSLIQLILTNNELSGQ 378 (391)
Q Consensus 338 ---~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~ 378 (391)
.++|+.|++++|.+.+. ++..+.+++.|+.|++++|++...
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 34788888888884432 334667788888888888887654
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.3e-20 Score=162.07 Aligned_cols=204 Identities=27% Similarity=0.212 Sum_probs=168.3
Q ss_pred hcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccC
Q 039650 113 IRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRN 192 (391)
Q Consensus 113 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 192 (391)
++++.+++. +....+.+..+ +..+ .++++.|++++|.+....+..+..+++|+.|++.+|.+..... ...
T Consensus 6 ~~~l~~l~~-----l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~ 75 (290)
T 1p9a_G 6 VSKVASHLE-----VNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGT 75 (290)
T ss_dssp EECSTTCCE-----EECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSC
T ss_pred ccccCCccE-----EECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCC
Confidence 455666663 34444555443 3333 2689999999999987777889999999999999999874333 378
Q ss_pred CCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEE
Q 039650 193 LKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLY 272 (391)
Q Consensus 193 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 272 (391)
+++|+.|++++|.+. ..+..+..+++|+.|++++|.++...+..|..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 76 l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 899999999999998 5666788899999999999999877778899999999999999999877777888999999999
Q ss_pred ccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccc
Q 039650 273 LSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG 328 (391)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 328 (391)
+++|.+.......+..+++|+.|++++|.+... +..+...++|+.+++.+|.+..
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence 999999977777788899999999999999754 4445567899999999998763
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.9e-22 Score=176.90 Aligned_cols=235 Identities=19% Similarity=0.213 Sum_probs=181.9
Q ss_pred CCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCC-CCccccCCCcccEEEccCCCCCCCccccccCCCcccEEE
Q 039650 146 KSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGS-IPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLY 224 (391)
Q Consensus 146 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 224 (391)
++++.++++++.+.+..+. +..+++|++|++.+|.+... .+..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6788999998887755544 55789999999999987643 556678899999999999988766677788899999999
Q ss_pred ccCc-ccccc-cchhhccCCCCCEEEcCCC-cccCc-cCccccCCC-CccEEEccCCc--cc-cccccccccCCcccEEE
Q 039650 225 FSMN-ALSGS-IPNEITNLRSLSDLQLSEN-TLNGS-IPLALGNLT-KLVVLYLSINK--LS-GSISLSYASLTSLTNLY 296 (391)
Q Consensus 225 l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~~~--~~-~~~~~~~~~~~~L~~L~ 296 (391)
+++| .++.. .+..+..+++|+.|++++| .+++. .+..+..++ +|++|++++|. ++ ...+..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9998 56542 4556778999999999999 77643 455677889 99999999994 44 23445566789999999
Q ss_pred cCCCc-cCchhhHhhhCCCCccEEEcCCC-cccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccc
Q 039650 297 LYENS-LCDSIQKEIGDMKSLSILDLSSN-KLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNE 374 (391)
Q Consensus 297 l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 374 (391)
+++|. +++.....+..+++|+.|++++| .+++.....+..++ +|+.|++++| +.+.....+. ..++.|++++|.
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC-CCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 99999 66666778889999999999999 56555555566655 9999999999 5433322222 346666789999
Q ss_pred cccCCCccccc
Q 039650 375 LSGQLSPELGS 385 (391)
Q Consensus 375 ~~~~~~~~~~~ 385 (391)
+++..|...+.
T Consensus 305 l~~~~~~~~~~ 315 (336)
T 2ast_B 305 FTTIARPTIGN 315 (336)
T ss_dssp SCCTTCSSCSS
T ss_pred CccccCCcccc
Confidence 99888766554
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=2.5e-22 Score=178.87 Aligned_cols=259 Identities=19% Similarity=0.213 Sum_probs=143.9
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCC----CCCCCCC-CccEEecCCcccccCChhhhhcC-----CCC
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIP----PSLGNLT-SLSYIGISNNLLSGSIPNEVESL-----KSL 71 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L 71 (391)
.+++++.+++..+..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3567777777666666666668888888887765554 5666777 78888888877766556555543 777
Q ss_pred CEEEeeCCccCCCCccc----ccCC-CCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccC-C
Q 039650 72 SDLRLYNNTLKGSIPSS----LGNL-TNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGN-L 145 (391)
Q Consensus 72 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~ 145 (391)
++|++++|.+++..+.. +..+ ++|++|++++|.+....+..+ ...+.. .
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-------------------------~~~l~~~~ 137 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF-------------------------KQAFSNLP 137 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH-------------------------HHHHTTSC
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH-------------------------HHHHHhCC
Confidence 77777777776544443 3333 677777777777654322221 122333 2
Q ss_pred CCCCEEECCCCCCCCCCCCC----cCCCC-CccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCC-Cc
Q 039650 146 KSLSDLRLDYNTLSGSIPYS----FGNLT-KLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNL-TN 219 (391)
Q Consensus 146 ~~L~~L~l~~~~~~~~~~~~----~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~ 219 (391)
++|+.|++++|.+.+..... +...+ +|++|++++|.+.+..+..+.. .+... ++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~ 197 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK--------------------FLASIPAS 197 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH--------------------HHHTSCTT
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHH--------------------HHHhCCCC
Confidence 46667777666655322211 22222 5555555555554333221111 11122 24
Q ss_pred ccEEEccCcccccc----cchhhcc-CCCCCEEEcCCCcccCccC----ccccCCCCccEEEccCCccccc-------cc
Q 039650 220 LTTLYFSMNALSGS----IPNEITN-LRSLSDLQLSENTLNGSIP----LALGNLTKLVVLYLSINKLSGS-------IS 283 (391)
Q Consensus 220 L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~-------~~ 283 (391)
|+.|++++|.++.. .+..+.. .++|+.|++++|.+.+... ..+..+++|++|++++|.+... ..
T Consensus 198 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 55555555444432 2222333 3466666666666653322 2345566777777777763321 22
Q ss_pred cccccCCcccEEEcCCCccCch
Q 039650 284 LSYASLTSLTNLYLYENSLCDS 305 (391)
Q Consensus 284 ~~~~~~~~L~~L~l~~~~~~~~ 305 (391)
..+..+++|+.|++++|.+...
T Consensus 278 ~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTSTTCCEEEEECTTSCBCCGG
T ss_pred HHhccCCceEEEecCCCcCCCc
Confidence 3445667777788888777543
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.1e-19 Score=157.72 Aligned_cols=194 Identities=24% Similarity=0.351 Sum_probs=146.3
Q ss_pred cCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccE
Q 039650 143 GNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTT 222 (391)
Q Consensus 143 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 222 (391)
..+++|+.|+++++.+.. .+ .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 456789999999988874 33 57788899999999998875443 78888999999999887643 35777888888
Q ss_pred EEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCcc
Q 039650 223 LYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSL 302 (391)
Q Consensus 223 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 302 (391)
|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+... +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 888888876432 37778888888888888764433 6778888888888888775443 67778888888888887
Q ss_pred CchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccC
Q 039650 303 CDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVG 353 (391)
Q Consensus 303 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~ 353 (391)
..... +..+++|+.|++++|++++..+ +..+. +|+.|++++|++++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~-~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTS-NLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCT-TCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCC-CCCEEEccCCeeec
Confidence 65443 6778888888888888875442 44443 78888888888774
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=4.3e-20 Score=154.58 Aligned_cols=196 Identities=17% Similarity=0.174 Sum_probs=109.2
Q ss_pred CccEEecCCcccccCChhhhhcCCCCCEEEeeCCc-cCCCCcccccCCCCCceEEecc-cccccccchhhcccccchhhh
Q 039650 46 SLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT-LKGSIPSSLGNLTNLVNLHLHI-NALSGLIPDEIRNLEFLSDLI 123 (391)
Q Consensus 46 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~ 123 (391)
+|++|++++|.+.+..+..+..+++|++|++++|. ++...+..+..+++|++|++++ +.+....
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-------------- 97 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-------------- 97 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC--------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC--------------
Confidence 56667776666654444456666667777776665 5544444666666777777666 5554322
Q ss_pred hceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCcc---EEEcCCC-cCCCCCCccccCCCccc-E
Q 039650 124 YNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLV---TLYLDTN-ALSGSIPDEIRNLKSLF-N 198 (391)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~ 198 (391)
+..|.++++|+.|++++|.++. ++. +..+++|+ .|++.+| .+....+..+..+++|+ .
T Consensus 98 ---------------~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~ 160 (239)
T 2xwt_C 98 ---------------PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160 (239)
T ss_dssp ---------------TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred ---------------HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeE
Confidence 2233444555555555555543 222 44455554 6666555 55444444455566666 6
Q ss_pred EEccCCCCCCCccccccCCCcccEEEccCcc-cccccchhhccC-CCCCEEEcCCCcccCccCccccCCCCccEEEccCC
Q 039650 199 LQLDNNTLSGSIPLSLGNLTNLTTLYFSMNA-LSGSIPNEITNL-RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSIN 276 (391)
Q Consensus 199 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 276 (391)
|++++|.+.......+.. ++|+.|++++|. ++...+..|..+ ++|+.|++++|.+....+. .+++|+.|.++++
T Consensus 161 L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 161 LKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp EECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred EEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 666666555222222223 566666666663 554445556666 6777777777666533222 4566666666654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=2.6e-20 Score=155.93 Aligned_cols=198 Identities=20% Similarity=0.184 Sum_probs=109.0
Q ss_pred CccEEEcCCCcCCCCCCccccCCCcccEEEccCCC-CCCCccccccCCCcccEEEccC-cccccccchhhccCCCCCEEE
Q 039650 171 KLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNT-LSGSIPLSLGNLTNLTTLYFSM-NALSGSIPNEITNLRSLSDLQ 248 (391)
Q Consensus 171 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 248 (391)
+++.|++.+|.+....+..+..+++|+.|++++|. +....+..+..+++|+.|++++ |.++...+..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44555555555443333344455555555555553 4322333445555555555555 555444444555566666666
Q ss_pred cCCCcccCccCccccCCCCcc---EEEccCC-ccccccccccccCCccc-EEEcCCCccCchhhHhhhCCCCccEEEcCC
Q 039650 249 LSENTLNGSIPLALGNLTKLV---VLYLSIN-KLSGSISLSYASLTSLT-NLYLYENSLCDSIQKEIGDMKSLSILDLSS 323 (391)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 323 (391)
+++|.+.+ .+. +..+++|+ ++++++| .+.......+..+++|+ .|++++|.+.......+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66665553 232 55555555 6666666 66555555566666676 7777766665444444444 6677777777
Q ss_pred Cc-ccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEccccc
Q 039650 324 NK-LNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNE 374 (391)
Q Consensus 324 ~~-i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 374 (391)
|+ +++..+..+..+.++|+.|++++|++++ ++.. .+++|+.|.++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 74 6544344444441367777777777663 3332 56667777776653
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.3e-19 Score=152.77 Aligned_cols=179 Identities=25% Similarity=0.255 Sum_probs=110.2
Q ss_pred CccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcC
Q 039650 171 KLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLS 250 (391)
Q Consensus 171 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 250 (391)
..+.+++.++.+.. ++..+. ++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45566666666652 333222 466677777776665555556666677777777766665555556666667777777
Q ss_pred CCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchh
Q 039650 251 ENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSI 330 (391)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 330 (391)
+|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.......+..+++|+.|++++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 66666555555666666666666666666555555566666666666666665555555666666666666666666444
Q ss_pred HHHHHHhhccccEEEcCCCcccC
Q 039650 331 LLSLANLTNSLKVLYLSSNHIVG 353 (391)
Q Consensus 331 ~~~~~~~~~~L~~L~l~~~~~~~ 353 (391)
+..+..+. +|+.|++++|++..
T Consensus 172 ~~~~~~l~-~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAFDRLG-KLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCT-TCCEEECCSCCBCT
T ss_pred HHHHhCCC-CCCEEEeeCCceeC
Confidence 44444433 66666666666553
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.4e-19 Score=155.63 Aligned_cols=193 Identities=25% Similarity=0.416 Sum_probs=94.1
Q ss_pred hcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCce
Q 039650 18 GRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVN 97 (391)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 97 (391)
.++++|++|+++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+ + ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCE
Confidence 345566666666665542 22 3555566666666665554 2222 5555556666665555552 2 23555555555
Q ss_pred EEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEc
Q 039650 98 LHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYL 177 (391)
Q Consensus 98 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 177 (391)
|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++
T Consensus 112 L~l~~n~l~~~-------------------------------~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l 158 (308)
T 1h6u_A 112 LDLTSTQITDV-------------------------------TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158 (308)
T ss_dssp EECTTSCCCCC-------------------------------GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred EECCCCCCCCc-------------------------------hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEc
Confidence 55555544321 013344455555555554442221 444444444444
Q ss_pred CCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCc
Q 039650 178 DTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGS 257 (391)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 257 (391)
.+|.+.+..+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+.
T Consensus 159 ~~n~l~~~~~--------------------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 159 GNAQVSDLTP--------------------------LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp CSSCCCCCGG--------------------------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred cCCcCCCChh--------------------------hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence 4444432211 3444445555555444432221 44555555555555555433
Q ss_pred cCccccCCCCccEEEccCCccc
Q 039650 258 IPLALGNLTKLVVLYLSINKLS 279 (391)
Q Consensus 258 ~~~~~~~~~~L~~l~l~~~~~~ 279 (391)
. .+..+++|+.+++++|.+.
T Consensus 211 ~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 211 S--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp G--GGTTCTTCCEEEEEEEEEE
T ss_pred c--cccCCCCCCEEEccCCeee
Confidence 2 2455566666666665554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=5.6e-19 Score=148.86 Aligned_cols=181 Identities=25% Similarity=0.265 Sum_probs=151.8
Q ss_pred CCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEc
Q 039650 146 KSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYF 225 (391)
Q Consensus 146 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 225 (391)
...+.++++++.+. .+|..+. ++++.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35677888888877 4444443 68899999999888777777888899999999999888666667888899999999
Q ss_pred cCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCch
Q 039650 226 SMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDS 305 (391)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 305 (391)
++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+...
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99988877777888899999999999998877777788899999999999999877777788889999999999999877
Q ss_pred hhHhhhCCCCccEEEcCCCcccch
Q 039650 306 IQKEIGDMKSLSILDLSSNKLNGS 329 (391)
Q Consensus 306 ~~~~~~~~~~L~~L~l~~~~i~~~ 329 (391)
....+..+++|+.|++++|.+...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 777888899999999999998754
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=162.51 Aligned_cols=107 Identities=22% Similarity=0.275 Sum_probs=52.3
Q ss_pred CCCCccEEEcCCCcCCCCCC--c-cccCCCcccEEEccCCCCCCCccccccCC---CcccEEEccCcccccccchhhccC
Q 039650 168 NLTKLVTLYLDTNALSGSIP--D-EIRNLKSLFNLQLDNNTLSGSIPLSLGNL---TNLTTLYFSMNALSGSIPNEITNL 241 (391)
Q Consensus 168 ~~~~L~~L~l~~~~~~~~~~--~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~ 241 (391)
.+++|++|++++|.+..... . .+..+++|+.|++++|.+....+..+..+ ++|+.|++++|.++ ..+..+.
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-- 271 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-- 271 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--
Confidence 34445555555554431111 0 12344555555555555543323333322 45666666655555 2233222
Q ss_pred CCCCEEEcCCCcccCccCccccCCCCccEEEccCCccc
Q 039650 242 RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLS 279 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 279 (391)
++|+.|++++|.+.+. +. +..+++|+.|++++|.+.
T Consensus 272 ~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 5666666666666532 22 455666666666666654
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=157.03 Aligned_cols=233 Identities=17% Similarity=0.102 Sum_probs=130.8
Q ss_pred CCccEEecCCcccccCChhh---hhcCCCCCEEEeeCCccCCCCcccc--cCCCCCceEEecccccccccchhhcccccc
Q 039650 45 TSLSYIGISNNLLSGSIPNE---VESLKSLSDLRLYNNTLKGSIPSSL--GNLTNLVNLHLHINALSGLIPDEIRNLEFL 119 (391)
Q Consensus 45 ~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 119 (391)
..++.+.+.++.+....... ...+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-------- 135 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-------- 135 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS--------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh--------
Confidence 34667777766543211111 1234567888888877776666666 6777788888777776532110
Q ss_pred hhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCC--C--CccccCCCc
Q 039650 120 SDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGS--I--PDEIRNLKS 195 (391)
Q Consensus 120 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~l~~~~~ 195 (391)
.....+..+++|+.|++++|.+....+..+..+++|++|++++|.+... . ...+..+++
T Consensus 136 -----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 198 (310)
T 4glp_A 136 -----------------LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA 198 (310)
T ss_dssp -----------------HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC
T ss_pred -----------------hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC
Confidence 0011233566777777777777655556666667777777766664311 0 111234444
Q ss_pred ccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCC---CCccEEE
Q 039650 196 LFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNL---TKLVVLY 272 (391)
Q Consensus 196 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~ 272 (391)
|+.|++++|.+. ..+. .....+..+++|++|++++|.+.+..+..+..+ ++|++|+
T Consensus 199 L~~L~Ls~N~l~-~l~~--------------------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 199 IQNLALRNTGME-TPTG--------------------VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp CCSCBCCSSCCC-CHHH--------------------HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred CCEEECCCCCCC-chHH--------------------HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence 444444444442 1111 000123455666666666666665444444444 5777777
Q ss_pred ccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccc
Q 039650 273 LSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG 328 (391)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 328 (391)
+++|.++.. +..+ +++|+.|++++|.+...+ .+..+++|+.|++++|++++
T Consensus 258 Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 258 LSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCCSC-CSCC--CSCCSCEECCSCCCCSCC--CTTSCCCCSCEECSSTTTSC
T ss_pred CCCCCCCch-hhhh--cCCCCEEECCCCcCCCCc--hhhhCCCccEEECcCCCCCC
Confidence 777776632 3322 267777777777775432 24566777777777777764
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.3e-18 Score=142.30 Aligned_cols=181 Identities=25% Similarity=0.246 Sum_probs=108.8
Q ss_pred cEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCC
Q 039650 173 VTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSEN 252 (391)
Q Consensus 173 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 252 (391)
+.++..++.+... +.. ..++++.|+++++.+.......+..+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4455555555422 222 2346677777777666444444566667777777776666555555566667777777776
Q ss_pred cccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHH
Q 039650 253 TLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILL 332 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 332 (391)
.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.......+..+++|+.|++++|.+.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--- 163 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--- 163 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC---
Confidence 66655555556666777777777666655555556666666666666666555555556666666666666655431
Q ss_pred HHHHhhccccEEEcCCCcccCCCcccccCCcc
Q 039650 333 SLANLTNSLKVLYLSSNHIVGEIPLGHGKFSS 364 (391)
Q Consensus 333 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 364 (391)
+++|+.|+++.|.+++.++..++.++.
T Consensus 164 -----~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 -----CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----CCCHHHHHHHHHhCCceeeccCccccC
Confidence 125666666666666666665555443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=8.4e-18 Score=137.44 Aligned_cols=159 Identities=28% Similarity=0.247 Sum_probs=86.8
Q ss_pred CCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEc
Q 039650 170 TKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQL 249 (391)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 249 (391)
+++++|++.+|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35566666666555444444555566666666666555333334455556666666666555444444555566666666
Q ss_pred CCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccch
Q 039650 250 SENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGS 329 (391)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 329 (391)
++|.+.+..+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+. ..+++|+.|+++.|++++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCce
Confidence 666555444444555566666666666555444444555556666666665442 2344555555555555555
Q ss_pred hHHHHH
Q 039650 330 ILLSLA 335 (391)
Q Consensus 330 ~~~~~~ 335 (391)
+|..+.
T Consensus 181 ip~~~~ 186 (208)
T 2o6s_A 181 VRNSAG 186 (208)
T ss_dssp BBCTTS
T ss_pred eeccCc
Confidence 554443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=5.1e-17 Score=143.78 Aligned_cols=240 Identities=17% Similarity=0.089 Sum_probs=138.2
Q ss_pred cEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCC-cccccCCCCCceE-Eec
Q 039650 24 NGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSI-PSSLGNLTNLVNL-HLH 101 (391)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L-~l~ 101 (391)
++++.+++.++ ..|..+ .+++++|++++|.++...+..|.++++|++|++++|.+.+.+ +.+|..+++++++ .+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 44555555554 333333 245666666666665333334556666666666666554322 2345555555443 223
Q ss_pred ccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCC-C
Q 039650 102 INALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDT-N 180 (391)
Q Consensus 102 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~ 180 (391)
++++. .+.+..|..+++|+.|++++|.+....+..+....++..+++.+ +
T Consensus 89 ~N~l~-----------------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~ 139 (350)
T 4ay9_X 89 ANNLL-----------------------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139 (350)
T ss_dssp ETTCC-----------------------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT
T ss_pred CCccc-----------------------------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccc
Confidence 34443 34455667777888888888777755555555566677777754 3
Q ss_pred cCCCCCCccccCC-CcccEEEccCCCCCCCccccccCCCcccEEEccC-cccccccchhhccCCCCCEEEcCCCcccCcc
Q 039650 181 ALSGSIPDEIRNL-KSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSM-NALSGSIPNEITNLRSLSDLQLSENTLNGSI 258 (391)
Q Consensus 181 ~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 258 (391)
.+.......+..+ ..++.|++++|.+.. .+.......+++.+.+.+ +.++......|..+++|+.|++++|.++...
T Consensus 140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 140 NIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp TCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred ccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 4443333445444 357778888887763 333333456778888764 5565555566777888888888888877544
Q ss_pred CccccCCCCccEEEccCCccccccccccccCCcccEEEcCCC
Q 039650 259 PLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYEN 300 (391)
Q Consensus 259 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 300 (391)
+.. +.+|+.|.+.++.-....+ .+..+++|+.+++..+
T Consensus 219 ~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 219 SYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp SSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 433 3455555554443222222 3566777888777653
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.6e-17 Score=141.59 Aligned_cols=171 Identities=30% Similarity=0.381 Sum_probs=95.2
Q ss_pred hcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCce
Q 039650 18 GRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVN 97 (391)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 97 (391)
.++++|+.|++++|.+.+ .+ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+ + ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 456667777777666653 22 36666667777776666653 222 5666666666666666653 2 23666666666
Q ss_pred EEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEc
Q 039650 98 LHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYL 177 (391)
Q Consensus 98 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 177 (391)
|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++
T Consensus 117 L~L~~n~i~~~-------------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 117 LSLEHNGISDI-------------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 163 (291)
T ss_dssp EECTTSCCCCC-------------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred EECCCCcCCCC-------------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence 66666655421 1233455666666666655533 34555566666666
Q ss_pred CCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccc
Q 039650 178 DTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALS 231 (391)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 231 (391)
++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 164 EDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred cCCccccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCccc
Confidence 6665553322 55555566666655555422 12445555555555555443
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.8e-17 Score=141.39 Aligned_cols=174 Identities=28% Similarity=0.394 Sum_probs=135.5
Q ss_pred cCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCC
Q 039650 166 FGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLS 245 (391)
Q Consensus 166 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 245 (391)
+..+++|+.|++.+|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.. ...+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCC
Confidence 44678899999999988744 347788999999999998874433 7888999999999988764 23477888999
Q ss_pred EEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCc
Q 039650 246 DLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNK 325 (391)
Q Consensus 246 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 325 (391)
.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 999999988743 4567888899999999888754 466778888999998888866544 7788888888888888
Q ss_pred ccchhHHHHHHhhccccEEEcCCCcccCC
Q 039650 326 LNGSILLSLANLTNSLKVLYLSSNHIVGE 354 (391)
Q Consensus 326 i~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 354 (391)
+++. ..+..+. +|+.|++++|+++..
T Consensus 190 i~~l--~~l~~l~-~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 190 ISDL--RALAGLK-NLDVLELFSQECLNK 215 (291)
T ss_dssp CCBC--GGGTTCT-TCSEEEEEEEEEECC
T ss_pred CCCC--hhhccCC-CCCEEECcCCcccCC
Confidence 8753 2354444 888888888888754
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=1e-16 Score=141.86 Aligned_cols=196 Identities=18% Similarity=0.094 Sum_probs=122.0
Q ss_pred ccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCCh-hhhhcCCCCCE-EEeeCCc
Q 039650 3 SFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIP-NEVESLKSLSD-LRLYNNT 80 (391)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~-L~l~~~~ 80 (391)
+-++++++.+ +..+ .+++++|++++|.++...+.+|..+++|++|++++|.+.+.++ ..+.+++++++ +.+.+++
T Consensus 15 ~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 15 LCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 3445566644 3333 2589999999999987777889999999999999998754444 45778888775 5566788
Q ss_pred cCCCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeecc-ccccccccccccCCC-CCCEEECCCCCC
Q 039650 81 LKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWI-NALSDLIPNEIGNLK-SLSDLRLDYNTL 158 (391)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 158 (391)
+....+..|..+++|++|++++|.+....+..+....++. .+.... +.+.......|..+. .++.|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-----~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-----LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE-----EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhh-----hhhhccccccccccccchhhcchhhhhhccccccc
Confidence 8877788899999999999999998866554444433333 222211 223333333344332 455566666655
Q ss_pred CCCCCCCcCCCCCccEEEcCC-CcCCCCCCccccCCCcccEEEccCCCCC
Q 039650 159 SGSIPYSFGNLTKLVTLYLDT-NALSGSIPDEIRNLKSLFNLQLDNNTLS 207 (391)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 207 (391)
+...+ ......+++++.+.+ +.+.......|..+++|+.|++++|.+.
T Consensus 167 ~~i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 167 QEIHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp CEECT-TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cCCCh-hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 53222 222334555555543 3344333334555555555555555554
No 101
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.73 E-value=1e-16 Score=144.24 Aligned_cols=331 Identities=13% Similarity=0.039 Sum_probs=204.4
Q ss_pred CCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcc
Q 039650 36 SIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRN 115 (391)
Q Consensus 36 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 115 (391)
+-..+|..|.+|+.+.+..+ +......+|.+|.+|+.+++..+ ++.....+|..++.|+.+.+..+ +......+|.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 33445555555555555433 22233344555555555555433 33233445555555555544432 23333344444
Q ss_pred cccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCc
Q 039650 116 LEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKS 195 (391)
Q Consensus 116 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 195 (391)
+...... ...........+|.++++|+.+.+..+. .......|.++.+|+.+.+..+ +......++..+..
T Consensus 139 ~~~~~~~-------~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 139 CDFKEIT-------IPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp CCCSEEE-------CCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred ccccccc-------cCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 3322100 0112222334567788888888886543 3345567778888888888654 33344556778888
Q ss_pred ccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccC
Q 039650 196 LFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSI 275 (391)
Q Consensus 196 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 275 (391)
|+.+.+..+... .........+|+.+.+.... +......+..+..++.+.+..+... .....|..+..++.+....
T Consensus 210 L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 210 LENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred cceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence 887777655332 12223345678888886543 3355667778888988888776443 4556778888888888776
Q ss_pred CccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCC
Q 039650 276 NKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEI 355 (391)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 355 (391)
..+. ...+..+.+|+.+.+..+ +......+|.++.+|+.+.+..+ ++.....+|..+. +|+.+++..+ ++...
T Consensus 286 ~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~-~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 286 VIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT-SLSNINFPLS-LRKIG 358 (394)
T ss_dssp SEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT-TCCEECCCTT-CCEEC
T ss_pred eeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC-CCCEEEECcc-ccEeh
Confidence 6543 445677888998888654 44556677888999999998654 5544556666655 8999999776 55456
Q ss_pred cccccCCccccEEEccccccccCCCccccccCCCcC
Q 039650 356 PLGHGKFSSLIQLILTNNELSGQLSPELGSLIQLEY 391 (391)
Q Consensus 356 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 391 (391)
..+|..|++|+.+++.++- . .+...+.+|.+||+
T Consensus 359 ~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred HHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence 7788999999999998752 2 33456788888763
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=8.9e-17 Score=151.24 Aligned_cols=184 Identities=27% Similarity=0.359 Sum_probs=122.6
Q ss_pred ccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccC
Q 039650 3 SFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLK 82 (391)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 82 (391)
.+..+.+.+... +.++++|+.|+++++.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.
T Consensus 27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred hccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCC
Confidence 344455554333 5678899999999998864 33 588899999999999988744 33 788999999999999887
Q ss_pred CCCcccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCC
Q 039650 83 GSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSI 162 (391)
Q Consensus 83 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 162 (391)
+ ++ .+..+++|++|++++|.+... .. +..+++|+.|++++|.+...
T Consensus 101 ~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~-----------------------------l~~l~~L~~L~Ls~N~l~~l- 146 (605)
T 1m9s_A 101 D-LS-SLKDLKKLKSLSLEHNGISDI--NG-----------------------------LVHLPQLESLYLGNNKITDI- 146 (605)
T ss_dssp C-CT-TSTTCTTCCEEECTTSCCCCC--GG-----------------------------GGGCTTCSEEECCSSCCCCC-
T ss_pred C-Ch-hhccCCCCCEEEecCCCCCCC--cc-----------------------------ccCCCccCEEECCCCccCCc-
Confidence 4 33 688889999999999887642 12 33455666666666665533
Q ss_pred CCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccc
Q 039650 163 PYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALS 231 (391)
Q Consensus 163 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 231 (391)
..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 147 -~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 147 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred -hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 345556666666666666553333 55566666666666655532 23555666666666666554
No 103
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=8e-18 Score=147.66 Aligned_cols=219 Identities=13% Similarity=0.098 Sum_probs=118.7
Q ss_pred CCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCC----CCCccccccCCCcc
Q 039650 145 LKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTL----SGSIPLSLGNLTNL 220 (391)
Q Consensus 145 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~L 220 (391)
+++|+.|++.. .++......|.++++|+.+++.++.+....+.+|..+.++..+....... .......|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67777777766 55555556677777777777777766555555666665555554443211 11122234444455
Q ss_pred c-EEEccCcccccccchhh---ccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEE
Q 039650 221 T-TLYFSMNALSGSIPNEI---TNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLY 296 (391)
Q Consensus 221 ~-~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 296 (391)
+ .+.+..... .....+ ....++..+.+.+.-...........|++|+.+++++|.+.......|.++++|+.++
T Consensus 179 ~~~i~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 179 ETTIQVGAMGK--LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp EEEEEECTTCC--HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ceeEEecCCCc--HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 4 333322110 001111 1234445555444311101111112356677777776666656666666677777777
Q ss_pred cCCCccCchhhHhhhCCCCcc-EEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEE
Q 039650 297 LYENSLCDSIQKEIGDMKSLS-ILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLI 369 (391)
Q Consensus 297 l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 369 (391)
+..+ +.......|.++++|+ .+.+.+ .++.....+|..+. +|+.++++++.+.......|.+|++|+.|.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~-~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD-NLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT-TEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc-cCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7665 5555556666777776 777766 55544445555544 677777766666655566677777777665
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1e-16 Score=131.91 Aligned_cols=152 Identities=23% Similarity=0.288 Sum_probs=105.8
Q ss_pred cEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCC
Q 039650 197 FNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSIN 276 (391)
Q Consensus 197 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 276 (391)
+.++++++.+. ..+..+. ++++.|++++|.+....+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46677776665 3343332 57788888887777666666777777888888877777666667777777777777777
Q ss_pred ccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCccc
Q 039650 277 KLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 277 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~ 352 (391)
.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+. +|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC-CCCEEEeCCCCcC
Confidence 77766556666777777777777777666666677777777777777777755544454444 6777777777665
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.9e-16 Score=149.07 Aligned_cols=188 Identities=26% Similarity=0.345 Sum_probs=147.6
Q ss_pred cCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCC
Q 039650 166 FGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLS 245 (391)
Q Consensus 166 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 245 (391)
+..+++|+.|++.+|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 45678899999999988743 257889999999999999875433 78899999999999988743 3678889999
Q ss_pred EEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCc
Q 039650 246 DLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNK 325 (391)
Q Consensus 246 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 325 (391)
.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999988743 3577889999999999998865 567788999999999999876554 7889999999999999
Q ss_pred ccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEE
Q 039650 326 LNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQL 368 (391)
Q Consensus 326 i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 368 (391)
+.+. ..+..+. +|+.|++++|++.+.....+..+..+..+
T Consensus 187 i~~l--~~l~~l~-~L~~L~L~~N~l~~~p~~~~~~l~~~~~l 226 (605)
T 1m9s_A 187 ISDL--RALAGLK-NLDVLELFSQECLNKPINHQSNLVVPNTV 226 (605)
T ss_dssp CCBC--GGGTTCT-TCSEEECCSEEEECCCCCCCSSCEEECCC
T ss_pred CCCC--hHHccCC-CCCEEEccCCcCcCCcccccccEEecccc
Confidence 8753 3455554 89999999998886544444444444433
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=1.4e-16 Score=148.28 Aligned_cols=188 Identities=24% Similarity=0.241 Sum_probs=132.4
Q ss_pred CCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEc
Q 039650 146 KSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYF 225 (391)
Q Consensus 146 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 225 (391)
.+++.|+++++.++. +|..+ .++|+.|++.+|.+.. ++ ..+++|+.|++++|.+.. .+. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 389999999999885 55544 3789999999999883 44 456889999999998874 444 443 8889999
Q ss_pred cCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCch
Q 039650 226 SMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDS 305 (391)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 305 (391)
++|.++. .+. .+++|+.|++++|.+.+ .+. .+++|++|++++|.++.... +. ++|+.|++++|.+...
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 8888775 333 56788888888888874 333 46788888888888875333 44 7888888888887643
Q ss_pred hhHhhhCCCCc-------cEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCC
Q 039650 306 IQKEIGDMKSL-------SILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKF 362 (391)
Q Consensus 306 ~~~~~~~~~~L-------~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 362 (391)
+. +.. +| +.|++++|.++ .+|..+..+ ++|+.|++++|++++..+..+..+
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL-DPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCC-CCCGGGGGS-CTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcC-CCCCEEEeeCCcCCCcCHHHHHHh
Confidence 33 332 55 77777777776 455555553 377777777777776655555443
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=2.9e-16 Score=127.04 Aligned_cols=154 Identities=22% Similarity=0.285 Sum_probs=112.4
Q ss_pred cCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccE
Q 039650 215 GNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTN 294 (391)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 294 (391)
..+++|+.|+++++.+.. .+ .+..+++|+.|++++|.+. ....+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 345667777777776652 22 4667778888888877554 2235677888888888888887666667778888888
Q ss_pred EEcCCCccCchhhHhhhCCCCccEEEcCCCc-ccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEcccc
Q 039650 295 LYLYENSLCDSIQKEIGDMKSLSILDLSSNK-LNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNN 373 (391)
Q Consensus 295 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 373 (391)
|++++|.+....+..+..+++|+.|++++|. +++ .+ .+..++ +|+.|++++|++.+ ++ .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~-~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLP-ELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCS-SCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCC-CCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 8888888877667778888899999998887 654 33 455554 89999999998884 33 6788899999999999
Q ss_pred cccc
Q 039650 374 ELSG 377 (391)
Q Consensus 374 ~~~~ 377 (391)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 8763
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=129.82 Aligned_cols=153 Identities=20% Similarity=0.210 Sum_probs=99.6
Q ss_pred cEEEccCCCCCCCccccccCCCcccEEEccCcccccccc-hhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccC
Q 039650 197 FNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIP-NEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSI 275 (391)
Q Consensus 197 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 275 (391)
+.++++++.+. ..+..+ .+.++.|++++|.++...+ ..|..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777665 333322 2456777777777664422 3466677777777777777655555667777777777777
Q ss_pred CccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccC
Q 039650 276 NKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVG 353 (391)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~ 353 (391)
|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|++++..+..+..+. +|+.|++++|++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH-SLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT-TCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC-CCCEEEecCcCCcC
Confidence 777666565666677777777777777665566666677777777777777655555555544 67777777766653
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=4.3e-16 Score=129.04 Aligned_cols=153 Identities=27% Similarity=0.325 Sum_probs=90.1
Q ss_pred cccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEcc
Q 039650 195 SLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLS 274 (391)
Q Consensus 195 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 274 (391)
+.+.++.+++.+. ..+..+ .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3455666666554 333322 2666777777766665556666666667777776666654444555666666666666
Q ss_pred CCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCccc
Q 039650 275 INKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 275 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~ 352 (391)
+|.+.......+..+++|+.|++++|.+.. .+..+..+++|+.|++++|++++..+..+..+. +|+.|++++|++.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS-SLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCC-CCCEEEeeCCCcc
Confidence 666665555555566666666666666643 334445566666666666666543333333333 5666666666555
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=1.1e-15 Score=125.67 Aligned_cols=152 Identities=21% Similarity=0.288 Sum_probs=71.5
Q ss_pred CEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCc
Q 039650 149 SDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMN 228 (391)
Q Consensus 149 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 228 (391)
+.++.+++.++ .+|..+. ++++.|++.+|.+....+..+..+++|+.|++++|.+....+..|.++++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555554 2232221 45555555555555433334455555555555555544333334444444444444444
Q ss_pred ccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhH
Q 039650 229 ALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQK 308 (391)
Q Consensus 229 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 308 (391)
.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+......
T Consensus 91 ------------------------~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 91 ------------------------KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp ------------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ------------------------cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 44433333344444444444444444444444444444555555555554444444
Q ss_pred hhhCCCCccEEEcCCCccc
Q 039650 309 EIGDMKSLSILDLSSNKLN 327 (391)
Q Consensus 309 ~~~~~~~L~~L~l~~~~i~ 327 (391)
.+..+++|+.|++++|.+.
T Consensus 147 ~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTCTTCCEEECCSSCEE
T ss_pred HHhCCCCCCEEEeCCCCcC
Confidence 4444555555555555443
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=4.3e-16 Score=125.99 Aligned_cols=154 Identities=19% Similarity=0.281 Sum_probs=116.9
Q ss_pred hhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCc
Q 039650 17 IGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLV 96 (391)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 96 (391)
..++++|++|+++++.+. .++ .+..+++|++|++++|.+. .. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 366788999999988887 445 5888889999999888654 33 3677888899999998888866677888888999
Q ss_pred eEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCC-CCCCCCCCcCCCCCccEE
Q 039650 97 NLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNT-LSGSIPYSFGNLTKLVTL 175 (391)
Q Consensus 97 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L 175 (391)
+|++++|.+... .+..++.+++|+.|++++|. +.. .+ .+..+++|+.|
T Consensus 116 ~L~Ls~n~i~~~-----------------------------~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 116 LLDISHSAHDDS-----------------------------ILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSL 164 (197)
T ss_dssp EEECCSSBCBGG-----------------------------GHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEE
T ss_pred EEEecCCccCcH-----------------------------hHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEE
Confidence 999888877643 23445667888888888887 553 33 57778888999
Q ss_pred EcCCCcCCCCCCccccCCCcccEEEccCCCCC
Q 039650 176 YLDTNALSGSIPDEIRNLKSLFNLQLDNNTLS 207 (391)
Q Consensus 176 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 207 (391)
++.+|.+.+.. .+..+++|+.|++++|.+.
T Consensus 165 ~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 165 NIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 99888887532 6778888999998888764
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=1.2e-15 Score=126.30 Aligned_cols=152 Identities=26% Similarity=0.272 Sum_probs=104.0
Q ss_pred ccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecc
Q 039650 23 FNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHI 102 (391)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 102 (391)
-+.++.+++.+. ..|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777665 3444332 7788888888887766677777788888888888887755556677788888888888
Q ss_pred cccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcC
Q 039650 103 NALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNAL 182 (391)
Q Consensus 103 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 182 (391)
|.+.... +..+..+++|+.|++++|.+. .++..+..+++|+.|++++|.+
T Consensus 98 N~l~~l~-----------------------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 98 NQLTVLP-----------------------------SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp SCCCCCC-----------------------------TTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred CcCCccC-----------------------------hhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence 7775332 233455667777777777766 4455666677777777777777
Q ss_pred CCCCCccccCCCcccEEEccCCCCC
Q 039650 183 SGSIPDEIRNLKSLFNLQLDNNTLS 207 (391)
Q Consensus 183 ~~~~~~~l~~~~~L~~L~l~~~~~~ 207 (391)
....+..+..+++|+.|++.+|.+.
T Consensus 148 ~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 148 KSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6555555666777777777777654
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=6.2e-16 Score=137.36 Aligned_cols=176 Identities=25% Similarity=0.184 Sum_probs=118.4
Q ss_pred CEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCcccc-CCCcccEEEccCCCCCCCccccccCCCcccEEEccC
Q 039650 149 SDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIR-NLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSM 227 (391)
Q Consensus 149 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 227 (391)
+.++.+++.++. +|..+ .+.++.|++++|.+....+..+. .+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666653 34333 23567777777777655555555 677777777777777654445566777777777777
Q ss_pred cccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcccccccccc---ccCCcccEEEcCCCccCc
Q 039650 228 NALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSY---ASLTSLTNLYLYENSLCD 304 (391)
Q Consensus 228 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 304 (391)
|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+ ..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77765555667777777777777777766666677777777777777777775544444 456777778888777776
Q ss_pred hhhHhhhCCCC--ccEEEcCCCccc
Q 039650 305 SIQKEIGDMKS--LSILDLSSNKLN 327 (391)
Q Consensus 305 ~~~~~~~~~~~--L~~L~l~~~~i~ 327 (391)
.....+..++. ++.|++.+|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66666666666 367777777765
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=7.2e-16 Score=136.92 Aligned_cols=176 Identities=28% Similarity=0.302 Sum_probs=143.5
Q ss_pred cEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCcccccc-CCCcccEEEccCcccccccchhhccCCCCCEEEcCC
Q 039650 173 VTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLG-NLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSE 251 (391)
Q Consensus 173 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 251 (391)
+.+++.++.+.. +|..+ .+.++.|++++|.+.......+. .+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888888874 44333 24688999999998865566666 889999999999999877777889999999999999
Q ss_pred CcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhh---hCCCCccEEEcCCCcccc
Q 039650 252 NTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEI---GDMKSLSILDLSSNKLNG 328 (391)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~ 328 (391)
|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99987777778899999999999999987777888899999999999999987666665 568999999999999986
Q ss_pred hhHHHHHHhhcc--ccEEEcCCCccc
Q 039650 329 SILLSLANLTNS--LKVLYLSSNHIV 352 (391)
Q Consensus 329 ~~~~~~~~~~~~--L~~L~l~~~~~~ 352 (391)
..+..+..++ . ++.|++++|++.
T Consensus 178 l~~~~~~~l~-~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLP-AWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSC-HHHHTTEECCSSCEE
T ss_pred cCHHHhhhcc-HhhcceEEecCCCcc
Confidence 6656666554 4 588999998765
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=1.6e-15 Score=141.23 Aligned_cols=178 Identities=29% Similarity=0.382 Sum_probs=106.9
Q ss_pred cccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEec
Q 039650 22 SFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLH 101 (391)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 101 (391)
+|+.|+++++.+.+ +|..+ .++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888775 45444 367888888888776 566 346788888888888775 454 444 78888888
Q ss_pred ccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCc
Q 039650 102 INALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNA 181 (391)
Q Consensus 102 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 181 (391)
+|.+..+ +. .+++|+.|++++|.++. ++. .+++|+.|++.+|.
T Consensus 129 ~N~l~~l------------------------------p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 129 NNQLTML------------------------------PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp SSCCSCC------------------------------CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred CCcCCCC------------------------------CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC
Confidence 8776532 11 24567777777776663 333 35667777777776
Q ss_pred CCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcc-------cEEEccCcccccccchhhccCCCCCEEEcCCCcc
Q 039650 182 LSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNL-------TTLYFSMNALSGSIPNEITNLRSLSDLQLSENTL 254 (391)
Q Consensus 182 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 254 (391)
+.. ++. +. ++|+.|++++|.+. ..+. +.. +| +.|++++|.++ ..+..+..+++|+.|++++|.+
T Consensus 172 L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 172 LTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSC
T ss_pred CCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcC
Confidence 664 333 33 66666666666665 3332 222 34 55555555554 2333333455555555555554
Q ss_pred cC
Q 039650 255 NG 256 (391)
Q Consensus 255 ~~ 256 (391)
.+
T Consensus 243 ~~ 244 (571)
T 3cvr_A 243 SS 244 (571)
T ss_dssp CH
T ss_pred CC
Confidence 43
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=4.2e-16 Score=131.89 Aligned_cols=170 Identities=25% Similarity=0.363 Sum_probs=100.6
Q ss_pred CCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEE
Q 039650 169 LTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQ 248 (391)
Q Consensus 169 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 248 (391)
+.++..+++.++.+.+.. .+..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.+....+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555566666665322 35566777777777776653 22 45666777777777776654333 66667777777
Q ss_pred cCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccc
Q 039650 249 LSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG 328 (391)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 328 (391)
+++|.+.+... +.. ++|++|++++|.+.+. ..+..+++|+.|++++|.+.... .+..+++|+.|++++|++++
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence 77776653222 122 6667777777666643 23556666666666666665432 45566666666666666654
Q ss_pred hhHHHHHHhhccccEEEcCCCcccCC
Q 039650 329 SILLSLANLTNSLKVLYLSSNHIVGE 354 (391)
Q Consensus 329 ~~~~~~~~~~~~L~~L~l~~~~~~~~ 354 (391)
. ..+..+. +|+.|++++|++...
T Consensus 165 ~--~~l~~l~-~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLK-KVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCC-CCCEEEEEEEEEECC
T ss_pred h--HHhccCC-CCCEEeCCCCcccCC
Confidence 3 3333333 666666666666543
No 117
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=2.4e-15 Score=134.61 Aligned_cols=267 Identities=12% Similarity=0.089 Sum_probs=199.4
Q ss_pred hcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCce
Q 039650 18 GRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVN 97 (391)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 97 (391)
..+..++.+.+.+. +..+...+|..+ +|+.+.+..+ +......+|.++ +|+.+.+.. .+......+|..|++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 44577888888765 334566777775 7889988776 443445556664 688888876 455456678888999999
Q ss_pred EEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEc
Q 039650 98 LHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYL 177 (391)
Q Consensus 98 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 177 (391)
+++..+.+..+...+|. ..+|+.+.+ . +.+..+...+|.++++|+.+++..+ ++......|.+ .+|+.+.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~l-----p-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLL-----P-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEEC-----C-TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred eecCCCcceEechhhEe-ecccCEEEe-----C-CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 99988888877777776 466664433 2 3466666788999999999999864 45455666766 78999999
Q ss_pred CCCcCCCCCCccccCCCcccEEEccCCCCC-----CCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCC
Q 039650 178 DTNALSGSIPDEIRNLKSLFNLQLDNNTLS-----GSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSEN 252 (391)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 252 (391)
.+ .+......+|.++++|+.+.+.++... ......|.++++|+.+.+.. .+.......|..|++|+.+.+..+
T Consensus 256 p~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 PN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred CC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 44 455466678899999999999887653 24456788899999999985 466677888999999999999765
Q ss_pred cccCccCccccCCCCccEEEccCCccccccccccccCC-cccEEEcCCCcc
Q 039650 253 TLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLT-SLTNLYLYENSL 302 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 302 (391)
+......+|..| +|+.+.+.++.........|.+++ .++.+.+..+.+
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 544567788999 999999999988766666777774 788888877654
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=4.3e-16 Score=136.60 Aligned_cols=246 Identities=11% Similarity=0.060 Sum_probs=140.6
Q ss_pred hhc-CCcccEEeecCCcCC--CCCCCCCCCCCCccEEecCCcccccCChhhhhc--------CCCCCEEEeeCCccCCCC
Q 039650 17 IGR-LSSFNGLSLYSNFLK--GSIPPSLGNLTSLSYIGISNNLLSGSIPNEVES--------LKSLSDLRLYNNTLKGSI 85 (391)
Q Consensus 17 ~~~-~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~ 85 (391)
+.. +++|++|++++|.+. ...+..+ +.++.+.+..+.+. ...|.. +++|+.+.+.. .++...
T Consensus 44 l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~ 116 (329)
T 3sb4_A 44 LRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE 116 (329)
T ss_dssp HHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEEC
T ss_pred HHHhhccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchh
Confidence 444 788999999999876 1111111 22333444333221 223444 66666666665 455444
Q ss_pred cccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCC--------------------
Q 039650 86 PSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNL-------------------- 145 (391)
Q Consensus 86 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~-------------------- 145 (391)
..+|..|++|+++++..+.+..+.+.+|..+.++..+....... ......+...+|.++
T Consensus 117 ~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~-~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~ 195 (329)
T 3sb4_A 117 DAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA-YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIM 195 (329)
T ss_dssp TTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH-HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHH
T ss_pred HHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh-hhccccccccccccccccceeEEecCCCcHHHHHh
Confidence 55566666666666666655555555555544444322211000 000001111122222
Q ss_pred ------CCCCEEECCCCCCCCCCCCCc-CCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCC
Q 039650 146 ------KSLSDLRLDYNTLSGSIPYSF-GNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLT 218 (391)
Q Consensus 146 ------~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 218 (391)
.++..+.+.+.-.. .....+ ..+++|+.+++.+|.+......+|.++++|+.++++++ +.......|.+++
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 23333433322110 000011 13678888888887777666667888888888888876 5545566778888
Q ss_pred ccc-EEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEc
Q 039650 219 NLT-TLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYL 273 (391)
Q Consensus 219 ~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 273 (391)
+|+ .+.+.+ .++......|..|++|+.++++.+.+.......|.+|++|+.+..
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 888 888877 555567778888888888888888777667778888888888753
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.3e-15 Score=128.82 Aligned_cols=168 Identities=24% Similarity=0.256 Sum_probs=94.1
Q ss_pred CCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEE
Q 039650 20 LSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLH 99 (391)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 99 (391)
+.++..++++++.+.+ .+ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 4455555666665543 22 3555666666666666554 333 45566666666666666663322 66666666666
Q ss_pred ecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCC
Q 039650 100 LHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDT 179 (391)
Q Consensus 100 l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 179 (391)
+++|.+....+ +.. ++|+.|++++|.++.. ..+..+++|+.|++++
T Consensus 92 L~~N~l~~l~~-------------------------------~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 92 VNRNRLKNLNG-------------------------------IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRN 137 (263)
T ss_dssp CCSSCCSCCTT-------------------------------CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTT
T ss_pred CCCCccCCcCc-------------------------------ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCC
Confidence 66665542100 111 5566666666655532 2355566666666666
Q ss_pred CcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccc
Q 039650 180 NALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALS 231 (391)
Q Consensus 180 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 231 (391)
|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 138 N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 138 NKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp SCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 665532 2455666666666666666533 44556666666666666554
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.65 E-value=4e-15 Score=122.32 Aligned_cols=152 Identities=21% Similarity=0.287 Sum_probs=74.5
Q ss_pred CEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCC-ccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccC
Q 039650 149 SDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIP-DEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSM 227 (391)
Q Consensus 149 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 227 (391)
+.++++++.++. +|..+ .+.++.|++.+|.+....+ ..+..+++|+.|++++|.+..
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~------------------- 71 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD------------------- 71 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-------------------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-------------------
Confidence 356666665552 33322 2334566666665553322 234455555555555555443
Q ss_pred cccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhh
Q 039650 228 NALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQ 307 (391)
Q Consensus 228 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 307 (391)
..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+
T Consensus 72 -----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 72 -----IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp -----ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred -----ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 333344444444444444444444444444445555555555555544444444445555555555555544444
Q ss_pred HhhhCCCCccEEEcCCCccc
Q 039650 308 KEIGDMKSLSILDLSSNKLN 327 (391)
Q Consensus 308 ~~~~~~~~L~~L~l~~~~i~ 327 (391)
..+..+++|+.|++++|.+.
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEE
T ss_pred HHhcCCCCCCEEEecCcCCc
Confidence 44555555555555555544
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=6.9e-15 Score=131.69 Aligned_cols=267 Identities=12% Similarity=0.100 Sum_probs=205.1
Q ss_pred CCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccchh
Q 039650 42 GNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSD 121 (391)
Q Consensus 42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 121 (391)
..+..++.+.+.+. +......+|.++ +|+.+.+..+ ++.....+|..+ +|+.+.+.. .+..+...+|.++.+|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34578889999775 333445567665 7999999876 555566678775 799999986 677788889999999994
Q ss_pred hhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEc
Q 039650 122 LIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQL 201 (391)
Q Consensus 122 l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 201 (391)
+.+..+.+..+...+|. +.+|+.+.+..+ +.......|.++++|+.+.+..+ +......+|.. .+|+.+.+
T Consensus 185 -----l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 185 -----ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp -----EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred -----eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 44445666666667776 589999999844 66566778999999999999764 44455566766 78999999
Q ss_pred cCCCCCCCccccccCCCcccEEEccCcccc-----cccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCC
Q 039650 202 DNNTLSGSIPLSLGNLTNLTTLYFSMNALS-----GSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSIN 276 (391)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 276 (391)
.++ +.......|.++++|+.+.+.++... ......|..|++|+.+.+.++ +......+|..|.+|+.+.+..+
T Consensus 256 p~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 PNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT
T ss_pred CCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc
Confidence 544 44455678889999999999887653 466788899999999999854 55566778999999999999665
Q ss_pred ccccccccccccCCcccEEEcCCCccCchhhHhhhCCC-CccEEEcCCCcc
Q 039650 277 KLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMK-SLSILDLSSNKL 326 (391)
Q Consensus 277 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i 326 (391)
+.......|.++ +|+.+.+.++.........|.+++ +++.+.+..+.+
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 665667788888 999999999987666666777775 788898887654
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=1.2e-14 Score=130.77 Aligned_cols=336 Identities=12% Similarity=0.031 Sum_probs=234.3
Q ss_pred ccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcc
Q 039650 8 QLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPS 87 (391)
Q Consensus 8 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 87 (391)
.++++...+|.+|.+|+.+.+..+ +..+...+|..|.+|+.+++..+ +.......+..+..|+.+.+..+ +......
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 456677889999999999999865 55567888999999999999765 33344556788889988877654 3324445
Q ss_pred cccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcC
Q 039650 88 SLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFG 167 (391)
Q Consensus 88 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 167 (391)
+|..+..++..... ........+|.++.+|+.+.+. +....+...+|.++.+|+.+.+..+ ++......+.
T Consensus 135 aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~------~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~ 205 (394)
T 4fs7_A 135 AFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLP------DSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFA 205 (394)
T ss_dssp TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECC------TTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTT
T ss_pred eeecccccccccCc--cccccchhhhcccCCCcEEecC------CccceeccccccCCCCceEEEcCCC-ceEeCchhhc
Confidence 66666443333222 2233445678888888755442 2334455667888899999888754 4445566788
Q ss_pred CCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEE
Q 039650 168 NLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDL 247 (391)
Q Consensus 168 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 247 (391)
++..|+.+.+..+... ..........|+.+.+..... ......+..+..++.+.+..+... .....|..++.++.+
T Consensus 206 ~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 206 ECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSFT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKV 281 (394)
T ss_dssp TCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTCC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEE
T ss_pred cccccceeecCCCceE--eehhhcccCCCceEEECCCce-ecccccccccccceeEEcCCCcce-eecccccccccccee
Confidence 8888888877654322 223334557788888865432 234456778888999988776443 566778888889888
Q ss_pred EcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCccc
Q 039650 248 QLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN 327 (391)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 327 (391)
......+ ....+..+.+|+.+.+..+ +.......|.+|.+|+.+++..+ +......+|.+|.+|+.+.+..+ ++
T Consensus 282 ~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~ 355 (394)
T 4fs7_A 282 IYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR 355 (394)
T ss_dssp EECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred ccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc
Confidence 8776543 3446778899999998765 55456677888999999999654 55566678889999999999766 65
Q ss_pred chhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEE
Q 039650 328 GSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQL 368 (391)
Q Consensus 328 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 368 (391)
.....+|..+. +|+.+++..+ +. .+...|.+|++|+.+
T Consensus 356 ~I~~~aF~~C~-~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 356 KIGANAFQGCI-NLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECTTTBTTCT-TCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EehHHHhhCCC-CCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 45556666665 8999999765 22 245678889888875
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.4e-15 Score=117.45 Aligned_cols=136 Identities=24% Similarity=0.190 Sum_probs=90.7
Q ss_pred CCCCEEEcCCCccc-CccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEE
Q 039650 242 RSLSDLQLSENTLN-GSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILD 320 (391)
Q Consensus 242 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 320 (391)
++|+.|++++|.+. +..+..+..+++|++|++++|.+... ..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777665 34455566677777777777776644 5556677777777777777654555555677777777
Q ss_pred cCCCcccchh-HHHHHHhhccccEEEcCCCcccCCCc---ccccCCccccEEEccccccccCCCc
Q 039650 321 LSSNKLNGSI-LLSLANLTNSLKVLYLSSNHIVGEIP---LGHGKFSSLIQLILTNNELSGQLSP 381 (391)
Q Consensus 321 l~~~~i~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~ 381 (391)
+++|.+++.. +..+..+. +|+.|++++|++++..+ ..+..+++|+.|++++|.+. .+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLE-CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCS-CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcCC-CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 7777776532 23444443 77888888887774433 36777888888888888766 4444
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=5.7e-15 Score=113.68 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=87.9
Q ss_pred CCCCCEEEcCCCccc-CccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEE
Q 039650 241 LRSLSDLQLSENTLN-GSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSIL 319 (391)
Q Consensus 241 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 319 (391)
.++++.|++++|.+. +..+..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777765 45555667777777777777777654 556667777777777777766555666667778888
Q ss_pred EcCCCcccch-hHHHHHHhhccccEEEcCCCcccCCCc---ccccCCccccEEEccc
Q 039650 320 DLSSNKLNGS-ILLSLANLTNSLKVLYLSSNHIVGEIP---LGHGKFSSLIQLILTN 372 (391)
Q Consensus 320 ~l~~~~i~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~ 372 (391)
++++|++++. .+..+..++ +|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLE-NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCT-TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCC-CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8887777753 234444444 77788888777775444 3567777777777654
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=4e-16 Score=145.97 Aligned_cols=176 Identities=20% Similarity=0.185 Sum_probs=90.5
Q ss_pred CCCCCEEEeeCCccCCCCcccccCCCCCceEEecccc-------------cccccchhhcccccchhhh-hc--------
Q 039650 68 LKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINA-------------LSGLIPDEIRNLEFLSDLI-YN-------- 125 (391)
Q Consensus 68 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~l~-l~-------- 125 (391)
+++|+.|++++|.+. .+|..+..+++|++|+++++. ..+..+..++++.+|+.|. +.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 455555555555554 455555555555555554432 2333445555555555554 11
Q ss_pred eeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCC
Q 039650 126 YLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNT 205 (391)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 205 (391)
.+.+..+.+.... ...|+.|++++|.++. +|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 427 ~l~l~~n~i~~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 427 SKFLLENSVLKME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp HHHHHHHHHHHHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred hhhhhcccccccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 1111111121111 1246666666666653 333 566666666666666665 444556666666666666665
Q ss_pred CCCCccccccCCCcccEEEccCccccccc-chhhccCCCCCEEEcCCCccc
Q 039650 206 LSGSIPLSLGNLTNLTTLYFSMNALSGSI-PNEITNLRSLSDLQLSENTLN 255 (391)
Q Consensus 206 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 255 (391)
+.. .+ .+..+++|+.|++++|.++... +..+..+++|+.|++++|.+.
T Consensus 498 l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 498 LEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 552 33 4555555555555555554333 445555555555555555554
No 126
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.54 E-value=2.4e-13 Score=122.22 Aligned_cols=321 Identities=11% Similarity=0.084 Sum_probs=162.7
Q ss_pred CCchhhhhcCC-cccEEeecCCcCCCCCCCCCCCCCCccEEecCCcc---cccCChhhhhcCCCCCEEEeeCCccCCCCc
Q 039650 11 GLIPHEIGRLS-SFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNL---LSGSIPNEVESLKSLSDLRLYNNTLKGSIP 86 (391)
Q Consensus 11 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 86 (391)
.+...+|.++. .|+.+.+..+ ++.+-..+|..|.+|+.+.+..+. +...-..+|..+..|+.+.+..+ ++....
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 34445555553 4666666543 333445556666666666654431 22222334445555555544432 222333
Q ss_pred ccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCc
Q 039650 87 SSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSF 166 (391)
Q Consensus 87 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 166 (391)
.++..+.+|+.+.+... +. .+...+|..+.+|+.+.+..+ +.......|
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~-----------------------------~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF 179 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VT-----------------------------SVADGMFSYCYSLHTVTLPDS-VTAIEERAF 179 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CC-----------------------------EECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred hhhhhhcccccccccce-ee-----------------------------eecccceecccccccccccce-eeEeccccc
Confidence 44555555555555432 22 223344555556666655432 222223333
Q ss_pred CCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCC-------------ccccccCCCcccEEEccCcccccc
Q 039650 167 GNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGS-------------IPLSLGNLTNLTTLYFSMNALSGS 233 (391)
Q Consensus 167 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------------~~~~~~~~~~L~~L~l~~~~~~~~ 233 (391)
. ...|+.+.+..... .....++..+..+............. ....+.....+..+.+... +...
T Consensus 180 ~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i 256 (394)
T 4gt6_A 180 T-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARI 256 (394)
T ss_dssp T-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEE
T ss_pred c-ccceeEEEECCccc-ccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEc
Confidence 3 23456665543322 13334455555555544433222100 0001112233444444432 2234
Q ss_pred cchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCC
Q 039650 234 IPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDM 313 (391)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 313 (391)
....|..+..|+.+.+...... .....|..|+.|+.+.+.. .+.......|.+|.+|+.+++..+ +......+|.+|
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 5566777888888887665432 4455677788888888754 344455667777888888888653 444555677788
Q ss_pred CCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcccccCCccccEEEcccccc
Q 039650 314 KSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPLGHGKFSSLIQLILTNNEL 375 (391)
Q Consensus 314 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 375 (391)
.+|+.+.+..+ ++.....+|..+. +|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~-~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCT-ALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCT-TCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCC-CCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 88888888643 5544455665555 7888888776433 24566677888887776543
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=3.6e-14 Score=111.52 Aligned_cols=132 Identities=23% Similarity=0.186 Sum_probs=86.6
Q ss_pred CcccEEEccCcccc-cccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEE
Q 039650 218 TNLTTLYFSMNALS-GSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLY 296 (391)
Q Consensus 218 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 296 (391)
++|+.|++++|.+. ...+..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666654 33444456667777777777776643 5566777777777777777654555555577777777
Q ss_pred cCCCccCchhh-HhhhCCCCccEEEcCCCcccchhH---HHHHHhhccccEEEcCCCccc
Q 039650 297 LYENSLCDSIQ-KEIGDMKSLSILDLSSNKLNGSIL---LSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 297 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~~L~~L~l~~~~~~ 352 (391)
+++|.+..... ..+..+++|+.|++++|.+++..+ ..+..+ ++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-PQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-SSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-ccCcEecCCCCChh
Confidence 77777755432 566777788888888887764433 233333 37888888877766
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=6.2e-14 Score=107.82 Aligned_cols=129 Identities=22% Similarity=0.192 Sum_probs=92.4
Q ss_pred CCcccEEEccCcccc-cccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEE
Q 039650 217 LTNLTTLYFSMNALS-GSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNL 295 (391)
Q Consensus 217 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 295 (391)
.++++.|++++|.+. ...+..+..+++|+.|++++|.+.+. ..+..+++|+++++++|.+.+..+..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777665 34455666777888888888877644 566778888888888888876555566667888888
Q ss_pred EcCCCccCchh-hHhhhCCCCccEEEcCCCcccchhH---HHHHHhhccccEEEcCC
Q 039650 296 YLYENSLCDSI-QKEIGDMKSLSILDLSSNKLNGSIL---LSLANLTNSLKVLYLSS 348 (391)
Q Consensus 296 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~~L~~L~l~~ 348 (391)
++++|.+.... +..+..+++|+.|++++|++++..+ ..+..++ +|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCCC
Confidence 88888886642 3667788888888888888875544 3444444 888888764
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.51 E-value=5.5e-14 Score=112.95 Aligned_cols=130 Identities=28% Similarity=0.329 Sum_probs=92.2
Q ss_pred cEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCc-cccCCCCccEEEccCCccccccccccccCCcccEEEcCC
Q 039650 221 TTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPL-ALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYE 299 (391)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 299 (391)
+.++++++.++ ..+..+. ++++.|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777765 3333222 3778888888877655443 467778888888888888766667777778888888888
Q ss_pred CccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCC
Q 039650 300 NSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGE 354 (391)
Q Consensus 300 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 354 (391)
|.+....+..+..+++|+.|++++|++++..+..+..+. +|+.|++++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-SLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-CCCEEEeCCCCccCc
Confidence 887766666677778888888888887766666665554 778888887777643
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=8.3e-16 Score=143.80 Aligned_cols=202 Identities=22% Similarity=0.159 Sum_probs=151.2
Q ss_pred CCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCc-------------cCCCCcccccCCCCCceEE-eccccccc
Q 039650 42 GNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNT-------------LKGSIPSSLGNLTNLVNLH-LHINALSG 107 (391)
Q Consensus 42 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 107 (391)
..+++|+.|++++|.+. .+|..+.++++|+.|+++++. ..+..|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 56788999999998886 788888888888888886653 3345566777888888888 55554432
Q ss_pred ccchhhc--ccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCC
Q 039650 108 LIPDEIR--NLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGS 185 (391)
Q Consensus 108 ~~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 185 (391)
.....+. .+..+....+..+.+..+.+..+ +. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+..
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 2111111 11112222344667777777764 44 889999999999999998 678899999999999999999985
Q ss_pred CCccccCCCcccEEEccCCCCCCCc-cccccCCCcccEEEccCcccccccc---hhhccCCCCCEEEc
Q 039650 186 IPDEIRNLKSLFNLQLDNNTLSGSI-PLSLGNLTNLTTLYFSMNALSGSIP---NEITNLRSLSDLQL 249 (391)
Q Consensus 186 ~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 249 (391)
++ .+..+++|+.|++++|.+.... +..+..+++|+.|++++|.++...+ ..+..+|+|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 45 7899999999999999998654 7889999999999999998875433 23345788888754
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.50 E-value=3.4e-13 Score=108.30 Aligned_cols=130 Identities=25% Similarity=0.338 Sum_probs=92.1
Q ss_pred cEEEccCCCCCCCccccccCCCcccEEEccCcccccccch-hhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccC
Q 039650 197 FNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPN-EITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSI 275 (391)
Q Consensus 197 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 275 (391)
+.++++++.+. ..+..+. ++++.|++++|.+....+. .+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666554 3333222 3677777777766644443 366777888888888877766677777788888888888
Q ss_pred CccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccch
Q 039650 276 NKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGS 329 (391)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 329 (391)
|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 888766666677778888888888888776677777888888888888887644
No 132
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=1.4e-12 Score=117.28 Aligned_cols=311 Identities=9% Similarity=0.091 Sum_probs=164.9
Q ss_pred cCCCchhhhhcCCcccEEeecCCc---CCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCC
Q 039650 9 LSGLIPHEIGRLSSFNGLSLYSNF---LKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSI 85 (391)
Q Consensus 9 ~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 85 (391)
++.+...+|.+|.+|+.+.+..+. +......+|..|.+|+.+.+..+ +.......+..+.+|+.+.+... +....
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~ 152 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVA 152 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeec
Confidence 555677889999999999998753 55566778999999999998765 33344556788999999999754 33355
Q ss_pred cccccCCCCCceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCC
Q 039650 86 PSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYS 165 (391)
Q Consensus 86 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 165 (391)
..++..+..|+.+.+..+ +..+...+|.. ..|+.+.+. .........+|..+.++..+..............
T Consensus 153 ~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip------~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~ 224 (394)
T 4gt6_A 153 DGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIP------AKVTRIGTNAFSECFALSTITSDSESYPAIDNVL 224 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEEC------TTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCE
T ss_pred ccceecccccccccccce-eeEeccccccc-cceeEEEEC------Ccccccccchhhhccccceeccccccccccccee
Confidence 667889999999988764 44344444433 234322221 1222233345555556655554433222110000
Q ss_pred cCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCC
Q 039650 166 FGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLS 245 (391)
Q Consensus 166 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 245 (391)
+.......... ........+..+.+... +.......|.++.+|+.+.+...... .....|..++.|+
T Consensus 225 ~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~ 291 (394)
T 4gt6_A 225 YEKSANGDYAL-----------IRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQ 291 (394)
T ss_dssp EEECTTSCEEE-----------EECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCC
T ss_pred ecccccccccc-----------cccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccccccccc
Confidence 00000000000 00011122233333221 11122334555666666666544332 4455566666666
Q ss_pred EEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCc
Q 039650 246 DLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNK 325 (391)
Q Consensus 246 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 325 (391)
.+.+... +.......|..|.+|+.+.+..+ ++......|.+|.+|+.+.+..+ +......+|.+|++|+.+.+.++.
T Consensus 292 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 292 DIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred cccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 6666532 33234455666667777766543 33344556666677777766443 334455666677777777776653
Q ss_pred ccchhHHHHHHhhccccEEEcCCC
Q 039650 326 LNGSILLSLANLTNSLKVLYLSSN 349 (391)
Q Consensus 326 i~~~~~~~~~~~~~~L~~L~l~~~ 349 (391)
.. ...+... .+|+.+.+..+
T Consensus 369 ~~---~~~~~~~-~~L~~i~i~~~ 388 (394)
T 4gt6_A 369 SQ---WNAISTD-SGLQNLPVAPG 388 (394)
T ss_dssp HH---HHTCBCC-CCC--------
T ss_pred ee---hhhhhcc-CCCCEEEeCCC
Confidence 32 1222222 25666655543
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=4e-14 Score=136.55 Aligned_cols=152 Identities=25% Similarity=0.334 Sum_probs=73.4
Q ss_pred CccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCC
Q 039650 187 PDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLT 266 (391)
Q Consensus 187 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 266 (391)
+..+..++.|+.|++++|.+. ..+..+..+++|+.|++++|.++ ..+..+..+++|+.|++++|.+. ..+..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 344555666666666666655 33334445566666666666555 44455556666666666666655 4455555666
Q ss_pred CccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCC-CccEEEcCCCcccchhHHHHHHhhccccEEE
Q 039650 267 KLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMK-SLSILDLSSNKLNGSILLSLANLTNSLKVLY 345 (391)
Q Consensus 267 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 345 (391)
+|++|++++|.+. ..+..+..+++|+.|++++|.+....+..+.... ....+++++|.+++..| +.|+.|+
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~ 365 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIE 365 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC-----
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------cccceeE
Confidence 6666666666554 2333355556666666666665544444433221 11124455555543332 2455555
Q ss_pred cCCC
Q 039650 346 LSSN 349 (391)
Q Consensus 346 l~~~ 349 (391)
+++|
T Consensus 366 l~~n 369 (727)
T 4b8c_D 366 INTD 369 (727)
T ss_dssp ----
T ss_pred eecc
Confidence 5554
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.1e-13 Score=109.63 Aligned_cols=110 Identities=21% Similarity=0.184 Sum_probs=56.3
Q ss_pred cCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccE
Q 039650 215 GNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTN 294 (391)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 294 (391)
..+++|+.|++++|.++.. +......++|+.|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3455666666666655522 22222223666666666655532 34555556666666666555433333345555555
Q ss_pred EEcCCCccCchhh-HhhhCCCCccEEEcCCCccc
Q 039650 295 LYLYENSLCDSIQ-KEIGDMKSLSILDLSSNKLN 327 (391)
Q Consensus 295 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~ 327 (391)
|++++|.+..... ..+..+++|+.|++++|.++
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 5555555533221 24445555555555555554
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=2.8e-13 Score=107.40 Aligned_cols=130 Identities=28% Similarity=0.264 Sum_probs=75.3
Q ss_pred ccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCC
Q 039650 220 LTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYE 299 (391)
Q Consensus 220 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 299 (391)
.+.+++.++.++.. +.. ..++|+.|+++++.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSC-CTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccC-CCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35566666655422 221 225667777777666655555556666677777777666655555556666666666666
Q ss_pred CccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccC
Q 039650 300 NSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVG 353 (391)
Q Consensus 300 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~ 353 (391)
|.+.......+..+++|+.|++++|++++..+..+..+. +|+.|++++|++..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc-ccCEEEecCCCeec
Confidence 666555555555666666666666666533332233333 56666666666553
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=1.2e-12 Score=103.70 Aligned_cols=132 Identities=26% Similarity=0.272 Sum_probs=95.0
Q ss_pred ccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccC
Q 039650 196 LFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSI 275 (391)
Q Consensus 196 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 275 (391)
.+.++++++.+.. .+.. ..++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3456666665542 2222 235777777777777655555667778888888888877766666677788888888888
Q ss_pred CccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchh
Q 039650 276 NKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSI 330 (391)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 330 (391)
|.+.+.....+..+++|+.|++++|.+.......+..+++|+.|++++|.+.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 8887666666777888888888888887666666777888888888888887544
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=1.5e-12 Score=104.44 Aligned_cols=127 Identities=27% Similarity=0.396 Sum_probs=82.6
Q ss_pred cEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCC
Q 039650 197 FNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSIN 276 (391)
Q Consensus 197 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 276 (391)
+.++++++.+. ..+..+ .++++.|++++|.++ ..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 223222 245666666666665 33456666677777777777776555666677777777777777
Q ss_pred ccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCccc
Q 039650 277 KLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN 327 (391)
Q Consensus 277 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 327 (391)
.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666667777777777777776655556677777777777777765
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=5.8e-14 Score=135.47 Aligned_cols=143 Identities=26% Similarity=0.324 Sum_probs=91.9
Q ss_pred cccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCC
Q 039650 211 PLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLT 290 (391)
Q Consensus 211 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 290 (391)
+..+..++.|+.|++++|.+. ..+..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+. ..+..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 445566677777777777766 33444446777777777777776 55666677777777777777776 4455666777
Q ss_pred cccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCcccCCCcc
Q 039650 291 SLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIVGEIPL 357 (391)
Q Consensus 291 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 357 (391)
+|+.|+|++|.+.. .+..+..+++|+.|++++|.+++..+..+.........+++++|.+++.++.
T Consensus 294 ~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 294 QLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 77777777777754 3344677777777777777777666666654432334466777776655554
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=3.7e-12 Score=102.19 Aligned_cols=126 Identities=31% Similarity=0.393 Sum_probs=69.1
Q ss_pred CEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCc
Q 039650 149 SDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMN 228 (391)
Q Consensus 149 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 228 (391)
+.++++++.++ .+|..+ .++++.|++.+|.+. ..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666665 333332 246666666666665 33455666666666666666665444444555555555555555
Q ss_pred ccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCcc
Q 039650 229 ALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKL 278 (391)
Q Consensus 229 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 278 (391)
.+....+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55544444555555555555555555543344444555555555555544
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=8.5e-13 Score=104.43 Aligned_cols=132 Identities=25% Similarity=0.217 Sum_probs=64.8
Q ss_pred cCCCcccEEEccCCCCCCCccccccCC-CcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCcc
Q 039650 191 RNLKSLFNLQLDNNTLSGSIPLSLGNL-TNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLV 269 (391)
Q Consensus 191 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 269 (391)
..+++|+.|++++|.+.. .+. +... ++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 344555555555555542 222 2222 2555555555555432 3445555555555555555533333335555555
Q ss_pred EEEccCCccccccc-cccccCCcccEEEcCCCccCchhhH---hhhCCCCccEEEcCCCcc
Q 039650 270 VLYLSINKLSGSIS-LSYASLTSLTNLYLYENSLCDSIQK---EIGDMKSLSILDLSSNKL 326 (391)
Q Consensus 270 ~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~i 326 (391)
+|++++|.+..... ..+..+++|+.|++++|.+...+.. .+..+++|+.|++++|.+
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555555543221 2344555555555555555432221 344555555555555544
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.6e-13 Score=121.67 Aligned_cols=90 Identities=28% Similarity=0.275 Sum_probs=41.5
Q ss_pred CCCccEEEccCCcccccc----ccccccCCcccEEEcCCCccCchh----hHhhhCCCCccEEEcCCCcccchhHHHHHH
Q 039650 265 LTKLVVLYLSINKLSGSI----SLSYASLTSLTNLYLYENSLCDSI----QKEIGDMKSLSILDLSSNKLNGSILLSLAN 336 (391)
Q Consensus 265 ~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 336 (391)
.++|++|++++|.+++.. ...+...++|++|++++|.+.+.. ...+...++|+.|++++|.+++.....+..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 344555555555544211 112233455555555555553322 233344455555555555555444333332
Q ss_pred h---hccccEEEcCCCcccCC
Q 039650 337 L---TNSLKVLYLSSNHIVGE 354 (391)
Q Consensus 337 ~---~~~L~~L~l~~~~~~~~ 354 (391)
. .++|++|++++|++++.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHH
T ss_pred HHHhCCCCCEEeccCCCCCHH
Confidence 2 13555555555555543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=3.2e-14 Score=115.05 Aligned_cols=110 Identities=26% Similarity=0.333 Sum_probs=48.6
Q ss_pred hhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCc
Q 039650 237 EITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSL 316 (391)
Q Consensus 237 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 316 (391)
.+..+++|+.|++++|.+.+ .+ .+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.... .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 34444455555555544442 22 34444555555555554442 2222333345555555555543321 34444555
Q ss_pred cEEEcCCCcccchhH-HHHHHhhccccEEEcCCCccc
Q 039650 317 SILDLSSNKLNGSIL-LSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 317 ~~L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~~~~~ 352 (391)
+.|++++|.+++... ..+..+. +|++|++++|++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~-~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALD-KLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTT-TCSEEEECSCHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCC-CCCEEEecCCccc
Confidence 555555555543221 2222222 4555555555544
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=1.7e-13 Score=121.48 Aligned_cols=165 Identities=21% Similarity=0.157 Sum_probs=115.6
Q ss_pred CCcccEEEccCcccccccchhhc-----cCCCCCEEEcCCCcccCccCcc-ccCCCCccEEEccCCcccccccccc----
Q 039650 217 LTNLTTLYFSMNALSGSIPNEIT-----NLRSLSDLQLSENTLNGSIPLA-LGNLTKLVVLYLSINKLSGSISLSY---- 286 (391)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~---- 286 (391)
.+.|+.+++++|.++......+. .+++|+.|++++|.+....... ...+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35677777777766543333332 2267888888888775332222 2335678999999998875433333
Q ss_pred -ccCCcccEEEcCCCccCchh----hHhhhCCCCccEEEcCCCcccchhHHHHHHh---hccccEEEcCCCcccCC----
Q 039650 287 -ASLTSLTNLYLYENSLCDSI----QKEIGDMKSLSILDLSSNKLNGSILLSLANL---TNSLKVLYLSSNHIVGE---- 354 (391)
Q Consensus 287 -~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~---~~~L~~L~l~~~~~~~~---- 354 (391)
...++|+.|++++|.+++.. ...+...++|+.|++++|.+++.+...+... .++|+.|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 24678999999999986533 3345678999999999999997765555432 24899999999999865
Q ss_pred CcccccCCccccEEEccccccccCCCc
Q 039650 355 IPLGHGKFSSLIQLILTNNELSGQLSP 381 (391)
Q Consensus 355 ~~~~~~~~~~L~~L~l~~~~~~~~~~~ 381 (391)
++..+..+++|++|++++|+++.....
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence 344556789999999999998754443
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.32 E-value=1.5e-10 Score=103.42 Aligned_cols=305 Identities=11% Similarity=0.069 Sum_probs=153.4
Q ss_pred CCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCCceEEecccccccccchhhcccccc
Q 039650 40 SLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNLVNLHLHINALSGLIPDEIRNLEFL 119 (391)
Q Consensus 40 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 119 (391)
++....+|+.+.+... ++..-..+|.+|.+|+.+.+..+ ++.....+|..+ +|+.+.+..+ +..+...+|... +|
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 4555667888888664 33344556777788888888654 443445566666 5666665442 333434444433 34
Q ss_pred hhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCCCCCCCcCCCCCccEEEcCCCcCCC------------CCC
Q 039650 120 SDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSGSIPYSFGNLTKLVTLYLDTNALSG------------SIP 187 (391)
Q Consensus 120 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~ 187 (391)
+.+.+. .........+|.++ +++.+.+..+ ++......+..+..++...+....... ...
T Consensus 116 ~~i~lp------~~~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 116 DDFEFP------GATTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp SEEECC------TTCCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred ccccCC------Cccccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee
Confidence 422221 11222222333332 3444444322 222333445555556555554332110 001
Q ss_pred ccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCC
Q 039650 188 DEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTK 267 (391)
Q Consensus 188 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 267 (391)
..+.....+..+.+...... .....+..+..++.+.+..+ +.......+..+..|+.+.+..+ +.......|..+.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp EECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 11223333444443332211 22233444556666666543 22244555666667777766554 33234455666677
Q ss_pred ccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcC
Q 039650 268 LVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLS 347 (391)
Q Consensus 268 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 347 (391)
|+.+.+..+ +.......|..|++|+.+.+.++.+.......|.+|.+|+.+.+..+ ++.....+|..+. +|+.+.+.
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-~L~~i~ip 341 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK-ALSTISYP 341 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCCCCCC
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC-CCCEEEEC
Confidence 777766543 33344555666677777777666665555566667777777777543 4433344454444 66666665
Q ss_pred CCcccCCCcccccCCcc
Q 039650 348 SNHIVGEIPLGHGKFSS 364 (391)
Q Consensus 348 ~~~~~~~~~~~~~~~~~ 364 (391)
.+ ++.....+|.+++.
T Consensus 342 ~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 342 KS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TT-CCEECTTTTTTSSC
T ss_pred Cc-cCEEchhHhhCCCC
Confidence 43 33334455555543
No 145
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=1.8e-10 Score=102.87 Aligned_cols=301 Identities=8% Similarity=0.019 Sum_probs=180.9
Q ss_pred hhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCccCCCCcccccCCCCC
Q 039650 16 EIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTLKGSIPSSLGNLTNL 95 (391)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 95 (391)
++....+|+.+.+... ++.+...+|..|.+|+.+++..+ +......+|..+ .|+.+.+..+ +......+|..+ +|
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 3566678888888754 44466777888888888888664 333444556665 5777776543 332334455554 68
Q ss_pred ceEEecccccccccchhhcccccchhhhhceeeeccccccccccccccCCCCCCEEECCCCCCCC------------CCC
Q 039650 96 VNLHLHINALSGLIPDEIRNLEFLSDLIYNYLIYWINALSDLIPNEIGNLKSLSDLRLDYNTLSG------------SIP 163 (391)
Q Consensus 96 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~ 163 (391)
+.+.+..+ +......+|.+. .+..+ .. ......+...++..+..++.+.+....... ...
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~-----~~-~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRI-----VI-PKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEE-----EE-CTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred ccccCCCc-cccccccccccc-eeeee-----ec-cceeeccccchhcccccccccccccccceeecccceeccccccee
Confidence 88887654 333444445443 22211 11 123333445566677777777765432210 111
Q ss_pred CCcCCCCCccEEEcCCCcCCCCCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhhccCCC
Q 039650 164 YSFGNLTKLVTLYLDTNALSGSIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEITNLRS 243 (391)
Q Consensus 164 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 243 (391)
..+.....+..+.+..... ......+..+.+++.+.+...- .......+..+..|+.+.+..+ ++......|..+.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp EECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred cccccccccccccccccee-EEeecccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 1233344555555543322 1333455667778887776542 2234455667788888888765 44466667778888
Q ss_pred CCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEcCC
Q 039650 244 LSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSS 323 (391)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 323 (391)
|+.+.+... +.......|..|.+|+.+.+.++.++......|.+|.+|+.+.+..+ +......+|.+|.+|+.+.+..
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 888888654 33344557788888888888877777666777888888888888654 4455566788888888887754
Q ss_pred CcccchhHHHHH
Q 039650 324 NKLNGSILLSLA 335 (391)
Q Consensus 324 ~~i~~~~~~~~~ 335 (391)
+ ++.....+|.
T Consensus 343 ~-v~~I~~~aF~ 353 (379)
T 4h09_A 343 S-ITLIESGAFE 353 (379)
T ss_dssp T-CCEECTTTTT
T ss_pred c-cCEEchhHhh
Confidence 3 4433334443
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=9.1e-14 Score=112.35 Aligned_cols=132 Identities=22% Similarity=0.266 Sum_probs=92.8
Q ss_pred cccCCCcccEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcc
Q 039650 213 SLGNLTNLTTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSL 292 (391)
Q Consensus 213 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 292 (391)
.+..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+.+.. .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 56667777788887777764 33 6677788888888888776 44555566688888888888887533 46677888
Q ss_pred cEEEcCCCccCchhh-HhhhCCCCccEEEcCCCcccchhHH----------HHHHhhccccEEEcCCCccc
Q 039650 293 TNLYLYENSLCDSIQ-KEIGDMKSLSILDLSSNKLNGSILL----------SLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 293 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~----------~~~~~~~~L~~L~l~~~~~~ 352 (391)
+.|++++|.+..... ..+..+++|+.|++++|.+.+..+. .+..+ ++|+.|+ +++++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l-~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL-PNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC-SSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC-CCcEEEC--CcccC
Confidence 888888888866443 5677888999999999888654332 12333 3677665 55554
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=8.8e-12 Score=97.82 Aligned_cols=103 Identities=25% Similarity=0.311 Sum_probs=85.9
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
+++++++++.+.. .+ .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 14 l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 14 VDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 6788888886443 33 37899999999999888888899999999999999998866666678899999999999999
Q ss_pred CCCCcccccCCCCCceEEeccccccc
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSG 107 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~ 107 (391)
++..+..+..+++|++|++++|.+..
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 87666778899999999999998763
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.3e-11 Score=97.12 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=84.1
Q ss_pred cccccCccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCCcc
Q 039650 2 LSFSKNQLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNNTL 81 (391)
Q Consensus 2 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 81 (391)
+++++++++.... .+. ++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 17 l~~~~n~l~~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 17 VNCQNIRLASVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp EECCSSCCSSCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCCCccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 5778888875433 332 7899999999999888888899999999999999998855555567899999999999999
Q ss_pred CCCCcccccCCCCCceEEeccccccc
Q 039650 82 KGSIPSSLGNLTNLVNLHLHINALSG 107 (391)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~ 107 (391)
.+..+..+..+++|++|++++|.+..
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ceeCHHHhccccCCCEEEeCCCCccc
Confidence 86666668899999999999998763
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1.6e-10 Score=90.60 Aligned_cols=105 Identities=29% Similarity=0.287 Sum_probs=64.6
Q ss_pred cEEEccCcccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCC
Q 039650 221 TTLYFSMNALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYEN 300 (391)
Q Consensus 221 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 300 (391)
+.++++++.++. .+..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 445555554442 22222 255666666666666555556666666777777776666555555666677777777777
Q ss_pred ccCchhhHhhhCCCCccEEEcCCCcccc
Q 039650 301 SLCDSIQKEIGDMKSLSILDLSSNKLNG 328 (391)
Q Consensus 301 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 328 (391)
.+.......+..+++|+.|++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7665555566677777777777776653
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=2.2e-10 Score=90.08 Aligned_cols=86 Identities=28% Similarity=0.333 Sum_probs=52.7
Q ss_pred CCCCEEEcCCCcccCccCccccCCCCccEEEccCCccccccccccccCCcccEEEcCCCccCchhhHhhhCCCCccEEEc
Q 039650 242 RSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENSLCDSIQKEIGDMKSLSILDL 321 (391)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 321 (391)
++|+.|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.......+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45566666666665555555566666666666666666544444556666666666666665555445666666777777
Q ss_pred CCCccc
Q 039650 322 SSNKLN 327 (391)
Q Consensus 322 ~~~~i~ 327 (391)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 766665
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=2.6e-10 Score=100.23 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=74.3
Q ss_pred CCCCccEEEcCCCcCCC---------CCCccccCCCcccEEEccCCCCCCCccccccCCCcccEEEccCcccccccchhh
Q 039650 168 NLTKLVTLYLDTNALSG---------SIPDEIRNLKSLFNLQLDNNTLSGSIPLSLGNLTNLTTLYFSMNALSGSIPNEI 238 (391)
Q Consensus 168 ~~~~L~~L~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 238 (391)
.+++|+.|.+.+..... .....+..+|+|+.|.+.++... ..+. + ..++|+.|.+..+.+.......+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 45677777665432210 11223345566666666554211 1111 2 24556666665554433222222
Q ss_pred c--cCCCCCEEEcCCC--cccCc-----cCccc--cCCCCccEEEccCCcccccccccc---ccCCcccEEEcCCCccCc
Q 039650 239 T--NLRSLSDLQLSEN--TLNGS-----IPLAL--GNLTKLVVLYLSINKLSGSISLSY---ASLTSLTNLYLYENSLCD 304 (391)
Q Consensus 239 ~--~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 304 (391)
. .+|+|+.|+++.+ ...+. ....+ ..+|+|++|.+.+|.+.+.....+ ..+++|+.|+++.|.+.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 2 4556666655321 10000 00011 134555555555554432111111 134455555555555443
Q ss_pred hhhH----hhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCc
Q 039650 305 SIQK----EIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNH 350 (391)
Q Consensus 305 ~~~~----~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~ 350 (391)
.... .+..+++|+.|++++|.+++.....+.... ...+++++++
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2211 112345555555555555544444333321 2334555443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=4.9e-10 Score=98.43 Aligned_cols=200 Identities=14% Similarity=0.128 Sum_probs=117.7
Q ss_pred CCccEEEcCCCcCC-CCC-------CccccCCCcccEEEccCCCCCC---------CccccccCCCcccEEEccCccccc
Q 039650 170 TKLVTLYLDTNALS-GSI-------PDEIRNLKSLFNLQLDNNTLSG---------SIPLSLGNLTNLTTLYFSMNALSG 232 (391)
Q Consensus 170 ~~L~~L~l~~~~~~-~~~-------~~~l~~~~~L~~L~l~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~~~~ 232 (391)
..++.|.+..+... ... ......+++|+.|.+.+..... .....+..+|+|+.|.+.++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 45778888765533 111 1223456889998886543211 12233456788888888776311
Q ss_pred ccchhhccCCCCCEEEcCCCcccCccCccc--cCCCCccEEEccCC--ccccc-----ccccc--ccCCcccEEEcCCCc
Q 039650 233 SIPNEITNLRSLSDLQLSENTLNGSIPLAL--GNLTKLVVLYLSIN--KLSGS-----ISLSY--ASLTSLTNLYLYENS 301 (391)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~l~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~~~ 301 (391)
..+. + ..++|+.|++..+.+.......+ ..+|+|++|+++.+ ...+. ....+ ..+|+|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 1121 2 36788888888777653332223 26788888887532 11111 01111 247888888888887
Q ss_pred cCchhhHhhh---CCCCccEEEcCCCcccchhHHHHHH---hhccccEEEcCCCcccCCCcccccC-CccccEEEccccc
Q 039650 302 LCDSIQKEIG---DMKSLSILDLSSNKLNGSILLSLAN---LTNSLKVLYLSSNHIVGEIPLGHGK-FSSLIQLILTNNE 374 (391)
Q Consensus 302 ~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~ 374 (391)
+.+.....+. .+|+|+.|+++.|.+++.+...+.. ..++|+.|++++|.+++.....+.. + ..++++++++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7543322222 4678888888888888766555532 2347888888888877554444432 2 3456777665
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=7e-10 Score=97.85 Aligned_cols=103 Identities=23% Similarity=0.220 Sum_probs=85.9
Q ss_pred cccccC-ccCCCchhhhhcCCcccEEeecC-CcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCC
Q 039650 2 LSFSKN-QLSGLIPHEIGRLSSFNGLSLYS-NFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNN 79 (391)
Q Consensus 2 l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 79 (391)
++.+++ +++++ +. +..+++|+.|++++ |.+.+..+..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456666 78754 44 88899999999996 8888777788999999999999999998777888899999999999999
Q ss_pred ccCCCCcccccCCCCCceEEeccccccc
Q 039650 80 TLKGSIPSSLGNLTNLVNLHLHINALSG 107 (391)
Q Consensus 80 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 107 (391)
.+.+..+..+..++ |++|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99866666666665 9999999988763
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.87 E-value=1.4e-09 Score=84.02 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=62.6
Q ss_pred CcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCc-ccchhHHHHHHh---hccccEEEcCCCc-ccCCCcccccCCcc
Q 039650 290 TSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNK-LNGSILLSLANL---TNSLKVLYLSSNH-IVGEIPLGHGKFSS 364 (391)
Q Consensus 290 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~---~~~L~~L~l~~~~-~~~~~~~~~~~~~~ 364 (391)
..|+.|++++|.+++.....+..+++|+.|++++|. |++.....+... +++|++|++++|. +++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 367778888777776666667778888888888874 777777777653 3468888888874 77666666677888
Q ss_pred ccEEEccccc
Q 039650 365 LIQLILTNNE 374 (391)
Q Consensus 365 L~~L~l~~~~ 374 (391)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888885
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=1.8e-08 Score=88.77 Aligned_cols=103 Identities=27% Similarity=0.286 Sum_probs=62.4
Q ss_pred EEEccCC-CCCCCccccccCCCcccEEEccC-cccccccchhhccCCCCCEEEcCCCcccCccCccccCCCCccEEEccC
Q 039650 198 NLQLDNN-TLSGSIPLSLGNLTNLTTLYFSM-NALSGSIPNEITNLRSLSDLQLSENTLNGSIPLALGNLTKLVVLYLSI 275 (391)
Q Consensus 198 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 275 (391)
.++++++ .+. ..+. +..+++|+.|++++ |.+....+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 554 3444 66666677777764 666655555666666666666666666655555666666666666666
Q ss_pred CccccccccccccCCcccEEEcCCCccC
Q 039650 276 NKLSGSISLSYASLTSLTNLYLYENSLC 303 (391)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 303 (391)
|.+.......+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666644444444333 666666666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=9.4e-09 Score=81.55 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=57.9
Q ss_pred hhhccCCCCCEEEcCCC-cccCc----cCccccCCCCccEEEccCCcccccc----ccccccCCcccEEEcCCCccCchh
Q 039650 236 NEITNLRSLSDLQLSEN-TLNGS----IPLALGNLTKLVVLYLSINKLSGSI----SLSYASLTSLTNLYLYENSLCDSI 306 (391)
Q Consensus 236 ~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~ 306 (391)
..+...+.|++|++++| .+... ....+...++|++|++++|.+.+.. ...+...++|++|++++|.+.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455666777777666 55422 2223344556666666666655321 122233455666666666554322
Q ss_pred ----hHhhhCCCCccEEEc--CCCcccchhHHHHHHhh---ccccEEEcCCCccc
Q 039650 307 ----QKEIGDMKSLSILDL--SSNKLNGSILLSLANLT---NSLKVLYLSSNHIV 352 (391)
Q Consensus 307 ----~~~~~~~~~L~~L~l--~~~~i~~~~~~~~~~~~---~~L~~L~l~~~~~~ 352 (391)
...+...++|+.|++ ++|.+++.+...+.... ++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 233344455666666 55555554443333321 24555555555443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=4.3e-08 Score=77.72 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=47.7
Q ss_pred cCCCCccEEEccCC-ccccc----cccccccCCcccEEEcCCCccCchh----hHhhhCCCCccEEEcCCCcccchhHHH
Q 039650 263 GNLTKLVVLYLSIN-KLSGS----ISLSYASLTSLTNLYLYENSLCDSI----QKEIGDMKSLSILDLSSNKLNGSILLS 333 (391)
Q Consensus 263 ~~~~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~~~~ 333 (391)
...+.|++|++++| .+... ....+...++|++|++++|.+.+.. ...+...++|+.|++++|.|++.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34445555555554 44321 1112223344555555555543321 122233344555555555555444333
Q ss_pred HHHhh---ccccEEEc--CCCcccCC----CcccccCCccccEEEcccccc
Q 039650 334 LANLT---NSLKVLYL--SSNHIVGE----IPLGHGKFSSLIQLILTNNEL 375 (391)
Q Consensus 334 ~~~~~---~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 375 (391)
+.... ++|++|++ ++|.+++. +...+...+.|++|++++|.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 33221 14555555 44444433 222333344555555555544
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.55 E-value=1.1e-07 Score=73.37 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=54.5
Q ss_pred CCccEEEccCCccccccccccccCCcccEEEcCCCc-cCchhhHhhhCC----CCccEEEcCCCc-ccchhHHHHHHhhc
Q 039650 266 TKLVVLYLSINKLSGSISLSYASLTSLTNLYLYENS-LCDSIQKEIGDM----KSLSILDLSSNK-LNGSILLSLANLTN 339 (391)
Q Consensus 266 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-i~~~~~~~~~~~~~ 339 (391)
..|++++++++.+++.....+..+++|+.|++++|. +++.....+... ++|+.|++++|. |++.+...+..+ +
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~-~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-R 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC-T
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC-C
Confidence 456777777776665544455667777777777774 555555555543 467777777764 777776666654 3
Q ss_pred cccEEEcCCCc
Q 039650 340 SLKVLYLSSNH 350 (391)
Q Consensus 340 ~L~~L~l~~~~ 350 (391)
+|++|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777774
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=4.7e-07 Score=75.41 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=19.0
Q ss_pred cCCcccEEeecCCcCCC--CCCCCCCCCCCccEEecCCcccc
Q 039650 19 RLSSFNGLSLYSNFLKG--SIPPSLGNLTSLSYIGISNNLLS 58 (391)
Q Consensus 19 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 58 (391)
++++|++|++++|.+.+ .++..+..+++|++|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 34555555555555543 12233344555555555555444
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=2.3e-06 Score=71.29 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=50.5
Q ss_pred ccCCcccEEEcCCCccCch--hhHhhhCCCCccEEEcCCCcccchh-HHHHHHhhccccEEEcCCCcccCCCc-------
Q 039650 287 ASLTSLTNLYLYENSLCDS--IQKEIGDMKSLSILDLSSNKLNGSI-LLSLANLTNSLKVLYLSSNHIVGEIP------- 356 (391)
Q Consensus 287 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~------- 356 (391)
..+++|+.|+|++|.+... .+..+..+++|+.|++++|++.+.. ...+. .. +|++|++++|++.+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHHH
Confidence 3567788888888877652 2345567778888888888777541 11111 12 67777777777765433
Q ss_pred ccccCCccccEEE
Q 039650 357 LGHGKFSSLIQLI 369 (391)
Q Consensus 357 ~~~~~~~~L~~L~ 369 (391)
..+..+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2345677777665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.79 E-value=2.7e-05 Score=61.23 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=38.7
Q ss_pred ccCCCCCEEEcCCC-cccCc----cCccccCCCCccEEEccCCccccccc----cccccCCcccEEEcCCCccCchhh--
Q 039650 239 TNLRSLSDLQLSEN-TLNGS----IPLALGNLTKLVVLYLSINKLSGSIS----LSYASLTSLTNLYLYENSLCDSIQ-- 307 (391)
Q Consensus 239 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~-- 307 (391)
...+.|+.|+++++ .+... +...+..-..|+.|++++|.+.+... ..+...+.|+.|+|++|.+.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666666653 44311 22233444555556665555553221 122233455555555555543222
Q ss_pred --HhhhCCCCccEEEcCC
Q 039650 308 --KEIGDMKSLSILDLSS 323 (391)
Q Consensus 308 --~~~~~~~~L~~L~l~~ 323 (391)
..+..-..|+.|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 2233334455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.54 E-value=0.00023 Score=55.94 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=53.4
Q ss_pred CCCcccEEEccCc-cccc----ccchhhccCCCCCEEEcCCCcccCcc----CccccCCCCccEEEccCCcccccc----
Q 039650 216 NLTNLTTLYFSMN-ALSG----SIPNEITNLRSLSDLQLSENTLNGSI----PLALGNLTKLVVLYLSINKLSGSI---- 282 (391)
Q Consensus 216 ~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~---- 282 (391)
.-+.|++|+++++ .+.. .....+...+.|+.|++++|.+.+.. ...+..-..|++|+++.|.+....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666653 4432 12233444556666666666554222 222233456666666666665321
Q ss_pred ccccccCCcccEEEcCCC---ccCc----hhhHhhhCCCCccEEEcCCCcc
Q 039650 283 SLSYASLTSLTNLYLYEN---SLCD----SIQKEIGDMKSLSILDLSSNKL 326 (391)
Q Consensus 283 ~~~~~~~~~L~~L~l~~~---~~~~----~~~~~~~~~~~L~~L~l~~~~i 326 (391)
...+...+.|+.|+++++ .+.. .....+..-+.|+.|+++.+.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 122333455666666543 2322 1223344445566666655543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.39 E-value=0.016 Score=42.34 Aligned_cols=55 Identities=18% Similarity=0.001 Sum_probs=30.4
Q ss_pred EEEcCCCccC--chhhHhhhCCCCccEEEcCCCcccchhHHHHHHhhccccEEEcCCCccc
Q 039650 294 NLYLYENSLC--DSIQKEIGDMKSLSILDLSSNKLNGSILLSLANLTNSLKVLYLSSNHIV 352 (391)
Q Consensus 294 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~~~ 352 (391)
.++.++..++ ..+ .. -.++|+.|+|++|.|+......+..+. +|+.|+|++|+..
T Consensus 12 ~v~Cs~~~L~~~~vP-~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLP-TA--FPVDTTELVLTGNNLTALPPGLLDALP-ALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSC-SC--CCTTCSEEECTTSCCSSCCTTTGGGCT-TCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCC-CC--CCcCCCEEECCCCcCCccChhhhhhcc-ccCEEEecCCCee
Confidence 5566666554 222 11 224677777777777643333444443 6777777776554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.18 E-value=0.035 Score=40.45 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=25.2
Q ss_pred CcccEEEcCCCccCchhhHhhhCCCCccEEEcCCCccc
Q 039650 290 TSLTNLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN 327 (391)
Q Consensus 290 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 327 (391)
++++.|+|++|.+.......|..+++|+.|+|.+|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35667777777766666666666677777777776654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.11 E-value=1.2 Score=30.43 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=26.5
Q ss_pred ccCCCchhhhhcCCcccEEeecCCcCCCCCCCCCCCCCCccEEecCC
Q 039650 8 QLSGLIPHEIGRLSSFNGLSLYSNFLKGSIPPSLGNLTSLSYIGISN 54 (391)
Q Consensus 8 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 54 (391)
.++.+...+|.+|..|+.+.|-.+ +..+-..+|..|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 445555566666666666666554 2234455566666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.50 E-value=9.8 Score=25.76 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=34.6
Q ss_pred CcCCCCCCCCCCCCCCccEEecCCcccccCChhhhhcCCCCCEEEeeCC
Q 039650 31 NFLKGSIPPSLGNLTSLSYIGISNNLLSGSIPNEVESLKSLSDLRLYNN 79 (391)
Q Consensus 31 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 79 (391)
..++.+-..+|..|..|+.+.+..+. +..-..+|..|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 34555667778888888888887753 3355566788888888888764
Done!