BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039651
         (353 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SI8|A Chain A, Crystal Structure Of E. Faecalis Catalase
 pdb|1SI8|B Chain B, Crystal Structure Of E. Faecalis Catalase
 pdb|1SI8|C Chain C, Crystal Structure Of E. Faecalis Catalase
 pdb|1SI8|D Chain D, Crystal Structure Of E. Faecalis Catalase
          Length = 484

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 19  QSDLTSFLNAWRPLFSRFHLIIVQDPDLKGELKIPQGFDHRVYTKSDIDQVIGPTTSIVF 78
           ++D  S +    PLF+RF   +  +      L+ P+GF  + YT      ++G  T I F
Sbjct: 75  KADFLSEVGKETPLFARFS-TVAGELGSSDTLRDPRGFALKFYTDEGNYDLVGNNTPIFF 133

Query: 79  SGYSCRYFGYLVSRKK 94
              + ++  ++ S+K+
Sbjct: 134 IRDAIKFPDFIHSQKR 149


>pdb|1S2O|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
           Synechocystis Sp. Pcc6803 At 1.40 A Resolution
 pdb|1TJ3|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
           Synechocystis Sp. Pcc6803 In A Closed Conformation
 pdb|1TJ4|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
           Synechocystis Sp. Pcc6803 In Complex With Sucrose
 pdb|1TJ5|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
           Synechocystis Sp. Pcc6803 In Complex With Sucrose And
           Phosphate
 pdb|1U2S|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
           Synechocystis Sp. Pcc6803 In Complex With Glucose
 pdb|1U2T|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
           Synechocystis Sp. Pcc6803 In Complex With Sucrose6p
 pdb|2B1Q|A Chain A, X-ray Structure Of The Sucrose-phosphatase (spp) From
           Synechocystis Sp.pcc6803 In Complex With Trehalose
 pdb|2B1R|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
           Synechocystis Sp.Pcc6803 In Complex With Cellobiose
 pdb|2D2V|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
           Synechocystis Sp.Pcc6803 In Complex With Maltose
          Length = 244

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 100 DDDCLPAKDNDGNLTNAVSQHLA 122
           D D LP + N GN T  + QHLA
Sbjct: 153 DVDLLPQRSNKGNATQYLQQHLA 175


>pdb|3ORJ|A Chain A, Crystal Structure Of A Sugar-Binding Protein
           (Bacova_04391) From Bacteroides Ovatus At 2.16 A
           Resolution
          Length = 439

 Score = 28.1 bits (61), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 76  IVFSGYSCRYFGYLVSRKKYIISVDDDCLPAKDNDGNLTNAV 117
           +  +GY+C +    VS K +++SV+   +P  + D N+ N +
Sbjct: 54  VYINGYNCYFNPVFVSNKSFLVSVNSK-VPTTEADENVRNTI 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,391,606
Number of Sequences: 62578
Number of extensions: 484430
Number of successful extensions: 1078
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 14
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)