Query 039651
Match_columns 353
No_of_seqs 95 out of 112
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 20:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bcv_A Putative glycosyltransf 90.1 0.19 6.4E-06 43.6 3.4 85 10-108 6-100 (240)
2 2fy7_A Beta-1,4-galactosyltran 89.2 0.11 3.7E-06 49.0 1.2 70 9-108 65-145 (287)
3 1qg8_A Protein (spore coat pol 85.9 0.14 4.8E-06 44.9 -0.1 26 83-108 79-104 (255)
4 3ckj_A Putative uncharacterize 82.3 0.97 3.3E-05 42.3 3.9 86 9-108 48-148 (329)
5 1xhb_A Polypeptide N-acetylgal 78.1 0.64 2.2E-05 45.4 1.1 36 83-118 105-140 (472)
6 3f1y_A Mannosyl-3-phosphoglyce 77.2 1.2 4.2E-05 43.5 2.9 86 9-108 94-196 (387)
7 2ffu_A Ppgalnact-2, polypeptid 77.1 0.81 2.8E-05 45.3 1.6 28 83-110 137-164 (501)
8 2d7i_A Polypeptide N-acetylgal 76.6 1.4 4.8E-05 44.8 3.3 36 83-118 187-222 (570)
9 3l7i_A Teichoic acid biosynthe 76.3 0.53 1.8E-05 49.1 0.0 90 10-109 3-100 (729)
10 2z86_A Chondroitin synthase; G 73.8 1.3 4.5E-05 44.8 2.1 85 10-108 94-190 (625)
11 2z86_A Chondroitin synthase; G 72.5 0.99 3.4E-05 45.7 0.9 84 10-108 376-470 (625)
12 2wvl_A Mannosyl-3-phosphoglyce 67.7 2.6 8.8E-05 41.9 2.6 34 10-44 54-88 (391)
13 4fix_A UDP-galactofuranosyl tr 63.8 1.3 4.4E-05 46.4 -0.4 26 84-109 256-285 (657)
14 2nxv_A ATP synthase subunits r 51.8 4.7 0.00016 36.0 1.3 28 82-109 64-91 (249)
15 4hg6_A Cellulose synthase subu 50.4 5.9 0.0002 42.1 1.9 25 84-108 230-254 (802)
16 3lw6_A FI08434P, beta-4-galact 35.5 14 0.00046 35.4 1.6 71 9-108 51-129 (287)
17 3hot_A Transposable element ma 33.1 21 0.00071 32.9 2.5 40 242-281 255-296 (345)
18 2cof_A Protein KIAA1914; PH do 26.3 46 0.0016 25.3 3.1 24 329-352 84-107 (107)
19 2d9d_A BAG family molecular ch 25.5 2.1E+02 0.007 22.7 6.5 61 264-348 27-88 (89)
20 2x0c_A Talin-1; cytoskeleton, 21.6 2.3E+02 0.0079 26.9 7.5 70 283-352 17-107 (309)
No 1
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=90.13 E-value=0.19 Score=43.61 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=47.9
Q ss_pred ceEEEEEecccCh---HHHHHHHhhc-ccCceEEEEeCCCccccCCCCCCceEEeechhhhhhhccccchhh-cc-----
Q 039651 10 EVDIVIAALQSDL---TSFLNAWRPL-FSRFHLIIVQDPDLKGELKIPQGFDHRVYTKSDIDQVIGPTTSIV-FS----- 79 (353)
Q Consensus 10 ~~~IVvttI~~~~---~~fl~~~~~~-~~~~~lvvV~D~d~~~~~ktP~g~~~~~~s~~~q~~~~~~~~~~i-~~----- 79 (353)
.+.||||+. +.. .++|++.... ...+.+|||-|+.+ ++ +.+-.+++........ ..
T Consensus 6 ~vsViIp~y-n~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~-------d~------t~~~~~~~~~~~~~i~~i~~~n~G 71 (240)
T 3bcv_A 6 KVSVIVPIY-NVEKYLDQCVQALLAQTLSDIEIILIDDESP-------DN------CPKICDDYAAQYPNIKVIHKKNAG 71 (240)
T ss_dssp SEEEEEEES-SCTTTHHHHHHHHHTCSSSSEEEEEEECCCS-------SS------HHHHHHHHHHHCSSEEEEECCCCC
T ss_pred cEEEEEecC-CCHHHHHHHHHHHHhCcCCCeEEEEEECCCC-------cC------HHHHHHHHHhhCCCEEEEECCCCC
Confidence 599999998 544 2444444322 34678999988422 11 1111111111111111 11
Q ss_pred ccccceeeeeeEeeeeeeeccCCCCCCCC
Q 039651 80 GYSCRYFGYLVSRKKYIISVDDDCLPAKD 108 (353)
Q Consensus 80 s~arkn~GyL~a~a~~I~~~DDDn~P~~~ 108 (353)
-.+.+|.|.-.|..+||+.+|+|..+..+
T Consensus 72 ~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~ 100 (240)
T 3bcv_A 72 LGMACNSGLDVATGEYVAFCDSDDYVDSD 100 (240)
T ss_dssp HHHHHHHHHHHCCSSEEEECCTTCCCCTT
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCcCCHH
Confidence 12335666666779999999999998765
No 2
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=89.21 E-value=0.11 Score=48.98 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=45.7
Q ss_pred CceEEEEEecccCh---HHHHHHHhh----cccCceEEEEeCCCccccCCCCCCceEEeechhhhhhhccccchhhcccc
Q 039651 9 SEVDIVIAALQSDL---TSFLNAWRP----LFSRFHLIIVQDPDLKGELKIPQGFDHRVYTKSDIDQVIGPTTSIVFSGY 81 (353)
Q Consensus 9 ~~~~IVvttI~~~~---~~fl~~~~~----~~~~~~lvvV~D~d~~~~~ktP~g~~~~~~s~~~q~~~~~~~~~~i~~s~ 81 (353)
-.+.||||+. +.. ..+|+...+ ....+.+|||-|. +..+|. --
T Consensus 65 ~~VSIIIP~y-N~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds-------~d~~f~----------------------~a 114 (287)
T 2fy7_A 65 HKVAIIIPFR-NRQEHLKYWLYYLHPVLQRQQLDYGIYVINQA-------GDTIFN----------------------RA 114 (287)
T ss_dssp CEEEEEEEES-SCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEC-------SSSCCC----------------------HH
T ss_pred CcEEEEEeeC-CCHHHHHHHHHHHHHHHHHhcCCceEEEEEeC-------CCCccc----------------------hh
Confidence 3599999998 544 255555542 2346778888772 112220 01
Q ss_pred ccceeee----eeEeeeeeeeccCCCCCCCC
Q 039651 82 SCRYFGY----LVSRKKYIISVDDDCLPAKD 108 (353)
Q Consensus 82 arkn~Gy----L~a~a~~I~~~DDDn~P~~~ 108 (353)
.-+|.|+ -.|..+||+++|+|+.|..+
T Consensus 115 ~a~N~G~~~al~~A~gd~i~flD~D~i~~~d 145 (287)
T 2fy7_A 115 KLLNVGFQEALKDYDYTCFVFSDVDLIPMND 145 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEECTTEEESBT
T ss_pred hhhhhHHHHHHHhCCCCEEEEECCCcccCCC
Confidence 2268888 44558999999999999986
No 3
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=85.90 E-value=0.14 Score=44.93 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=21.0
Q ss_pred cceeeeeeEeeeeeeeccCCCCCCCC
Q 039651 83 CRYFGYLVSRKKYIISVDDDCLPAKD 108 (353)
Q Consensus 83 rkn~GyL~a~a~~I~~~DDDn~P~~~ 108 (353)
.+|.|+-.|..+||+.+|+|+.+..+
T Consensus 79 a~N~gi~~a~g~~i~~lD~Dd~~~~~ 104 (255)
T 1qg8_A 79 LINQAIEMAEGEYITYATDDNIYMPD 104 (255)
T ss_dssp HHHHHHHHCCCSEEEEEETTEEECTT
T ss_pred HHHHHHHHcCCCEEEEeCCCCccChH
Confidence 45666666679999999999998764
No 4
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=82.26 E-value=0.97 Score=42.31 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=46.4
Q ss_pred CceEEEEEecccCh---HHHHHHHhhcc-c-CceEEEEeCCCccccCCCCCCceEEeechhhhhhhccccchhh-ccc--
Q 039651 9 SEVDIVIAALQSDL---TSFLNAWRPLF-S-RFHLIIVQDPDLKGELKIPQGFDHRVYTKSDIDQVIGPTTSIV-FSG-- 80 (353)
Q Consensus 9 ~~~~IVvttI~~~~---~~fl~~~~~~~-~-~~~lvvV~D~d~~~~~ktP~g~~~~~~s~~~q~~~~~~~~~~i-~~s-- 80 (353)
-.+.||||+. ++. .+++++..... . .+.+|||-|+.+ ++ +.+-.+++.......+ +-.
T Consensus 48 ~~vSViIp~y-N~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~-------D~------t~~~~~~~~~~~~~~~~~~~~~ 113 (329)
T 3ckj_A 48 RTISVVLPAL-DEEDTIGSVIDSISPLVDGLVDELIVLDSGST-------DD------TEIRAVAAGARVVSREQALPEV 113 (329)
T ss_dssp CCEEEEEEES-SCTTTHHHHHHHHGGGBTTTBSEEEEEECSCC-------SS------HHHHHHHTTCEEEEHHHHCTTS
T ss_pred CcEEEEEeeC-CCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCC-------ch------HHHHHHHhhhhhccceeeeccC
Confidence 4699999999 544 24555554332 2 478999988422 11 1111221111111111 111
Q ss_pred ------cccceeeeeeEeeeeeeeccCCCC-CCCC
Q 039651 81 ------YSCRYFGYLVSRKKYIISVDDDCL-PAKD 108 (353)
Q Consensus 81 ------~arkn~GyL~a~a~~I~~~DDDn~-P~~~ 108 (353)
.+-+|.|+-.|..+||+.+|+|.. +..+
T Consensus 114 ~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~p~ 148 (329)
T 3ckj_A 114 PIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPM 148 (329)
T ss_dssp CCCCSHHHHHHHHHHHCCCSEEEECCTTEESCCTT
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEECCCCCCcChH
Confidence 112345555566999999999998 5654
No 5
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=78.05 E-value=0.64 Score=45.42 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=25.9
Q ss_pred cceeeeeeEeeeeeeeccCCCCCCCCCCCCcchhhh
Q 039651 83 CRYFGYLVSRKKYIISVDDDCLPAKDNDGNLTNAVS 118 (353)
Q Consensus 83 rkn~GyL~a~a~~I~~~DDDn~P~~~~~g~~~d~~~ 118 (353)
-+|.|.-.|..+||+.+|+|+.+..++....+..+.
T Consensus 105 a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~ 140 (472)
T 1xhb_A 105 ARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIK 140 (472)
T ss_dssp HHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHH
T ss_pred HHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHHH
Confidence 356677777799999999999988876433333333
No 6
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=77.16 E-value=1.2 Score=43.50 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=48.2
Q ss_pred CceEEEEEecccC---hHHHHHHHhhcc----cCceEEEEeCCCccccCCCCCCceEEeechhhhhhhccccc-h---hh
Q 039651 9 SEVDIVIAALQSD---LTSFLNAWRPLF----SRFHLIIVQDPDLKGELKIPQGFDHRVYTKSDIDQVIGPTT-S---IV 77 (353)
Q Consensus 9 ~~~~IVvttI~~~---~~~fl~~~~~~~----~~~~lvvV~D~d~~~~~ktP~g~~~~~~s~~~q~~~~~~~~-~---~i 77 (353)
-.+.||||+. ++ ..+++++..+.+ ..+.+|||-|+. +++ |.+-.+++..... . ++
T Consensus 94 p~vSVVIP~y-Ne~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgS-------tD~------T~~i~~~~~~~v~~~~~~~i 159 (387)
T 3f1y_A 94 LTVSAVLPSR-NVADTVGGIIDEIHALNERAPLIDQILVVDADS-------EDG------TAGVAASHGAEVYSENELMS 159 (387)
T ss_dssp CCEEEEEEES-SCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSC-------SSS------HHHHHHHTTCEEEEGGGTTG
T ss_pred CeEEEEEEcC-CCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcC-------Ccc------HHHHHHHhCchhcccceeEe
Confidence 3589999999 53 335666665422 367899998842 222 1111121111110 0 11
Q ss_pred -c----cccccceeeeeeEeeeeeeeccCCCC-CCCC
Q 039651 78 -F----SGYSCRYFGYLVSRKKYIISVDDDCL-PAKD 108 (353)
Q Consensus 78 -~----~s~arkn~GyL~a~a~~I~~~DDDn~-P~~~ 108 (353)
. .--+.+|.|+-.|..+||+.+|.|.. +..+
T Consensus 160 ~~~~n~G~g~A~n~G~~~A~gd~i~~lDaD~~~~~p~ 196 (387)
T 3f1y_A 160 GYGDAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQ 196 (387)
T ss_dssp GGCSCCSHHHHHHHHTTTCCSSEEEECCTTCSSCCTH
T ss_pred cCCccCCHHHHHHHHHHhcCCCEEEEEcCCCCcCCHH
Confidence 0 01123456677777999999999999 4543
No 7
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=77.14 E-value=0.81 Score=45.26 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=23.0
Q ss_pred cceeeeeeEeeeeeeeccCCCCCCCCCC
Q 039651 83 CRYFGYLVSRKKYIISVDDDCLPAKDND 110 (353)
Q Consensus 83 rkn~GyL~a~a~~I~~~DDDn~P~~~~~ 110 (353)
-+|.|.-.|..+||+.+|+|+.+..++.
T Consensus 137 A~N~G~~~A~gd~i~flD~D~~~~p~~L 164 (501)
T 2ffu_A 137 SRVRGADAAQAKVLTFLDSHCECNEHWL 164 (501)
T ss_dssp HHHHHHHHCCSSEEEECCSSEEECTTCH
T ss_pred HHHHHHHhcCCCEEEEECCCcccCccHH
Confidence 4567777777999999999999987653
No 8
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=76.61 E-value=1.4 Score=44.75 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=26.1
Q ss_pred cceeeeeeEeeeeeeeccCCCCCCCCCCCCcchhhh
Q 039651 83 CRYFGYLVSRKKYIISVDDDCLPAKDNDGNLTNAVS 118 (353)
Q Consensus 83 rkn~GyL~a~a~~I~~~DDDn~P~~~~~g~~~d~~~ 118 (353)
-+|.|.-.|..+||+.+|+|+.+..++....+..+.
T Consensus 187 A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~ 222 (570)
T 2d7i_A 187 TRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIA 222 (570)
T ss_dssp HHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHH
Confidence 356777777799999999999998776443344433
No 9
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=76.31 E-value=0.53 Score=49.13 Aligned_cols=90 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred ceEEEEEecccChHHHHHHHhhcc-----cCceEEEEeCCCccccCCCCCCce-EEeechh-h-hhhhccccchhhcccc
Q 039651 10 EVDIVIAALQSDLTSFLNAWRPLF-----SRFHLIIVQDPDLKGELKIPQGFD-HRVYTKS-D-IDQVIGPTTSIVFSGY 81 (353)
Q Consensus 10 ~~~IVvttI~~~~~~fl~~~~~~~-----~~~~lvvV~D~d~~~~~ktP~g~~-~~~~s~~-~-q~~~~~~~~~~i~~s~ 81 (353)
.+.|||||. +.. ++|++.-+++ ..+.+|||-|+.+ ..... ++-+..+ + +-++... ..- ..-.
T Consensus 3 ~vSVIIp~y-N~~-~~L~~~L~Sll~Qt~~~~EIIVVDDgSt------D~t~~il~~~~~~~~~~i~~i~~-~~n-~G~~ 72 (729)
T 3l7i_A 3 KLTIIVTYY-NAE-EYITGCLESIKQQRTQDFNLIIVNDGST------DQSKKLMDEAIKDYDKNIRFIDL-DEN-SGHA 72 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEcC-CCH-HHHHHHHHHHHhCCCCCeEEEEEECCCC------CcHHHHHHHHHHhCCCCEEEEEC-CCC-CCHH
Confidence 478999998 554 5555544443 4677999988422 11111 1111000 0 0000000 000 1234
Q ss_pred ccceeeeeeEeeeeeeeccCCCCCCCCC
Q 039651 82 SCRYFGYLVSRKKYIISVDDDCLPAKDN 109 (353)
Q Consensus 82 arkn~GyL~a~a~~I~~~DDDn~P~~~~ 109 (353)
+.+|.|.-.|..+||..+|+|..+..+.
T Consensus 73 ~arN~gi~~A~gdyI~flD~Dd~~~p~~ 100 (729)
T 3l7i_A 73 HARNIALEEVETPYFMFLDADDELASYA 100 (729)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHhccCCEEEEECCCCCCChhH
Confidence 5678898888899999999999997654
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=73.82 E-value=1.3 Score=44.76 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=48.7
Q ss_pred ceEEEEEecccCh---HHHHHHHhhcc--cCceEEEEeCCCccccCCCCCCceEEeechhhhhhhccc-cchhh-cc--c
Q 039651 10 EVDIVIAALQSDL---TSFLNAWRPLF--SRFHLIIVQDPDLKGELKIPQGFDHRVYTKSDIDQVIGP-TTSIV-FS--G 80 (353)
Q Consensus 10 ~~~IVvttI~~~~---~~fl~~~~~~~--~~~~lvvV~D~d~~~~~ktP~g~~~~~~s~~~q~~~~~~-~~~~i-~~--s 80 (353)
.+.|||||. +.. ..+|++..... ..+.+|||-|+.+ +. +.+-.+++... ....+ -. +
T Consensus 94 ~vsviIp~~-n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~------d~-------t~~~~~~~~~~~~i~~i~~~~~~ 159 (625)
T 2z86_A 94 GLSIVIPTY-NRAKILAITLACLCNQKTIYDYEVIVADDGSK------EN-------IEEIVREFESLLNIKYVRQKDYG 159 (625)
T ss_dssp CEEEEEEES-SCHHHHHHHHHHHHTCCCSSCEEEEEEEESCS------SC-------HHHHHHTTTTTSCEEEEEECCCS
T ss_pred cEEEEEecC-CcHHHHHHHHHHHHhhccCCCeEEEEEeCCCc------hh-------HHHHHHHhhhcCCeEEEEeCCCC
Confidence 589999999 655 13344443321 2577999988422 11 12222222110 01112 11 1
Q ss_pred ---cccceeeeeeEeeeeeeeccCCCCCCCC
Q 039651 81 ---YSCRYFGYLVSRKKYIISVDDDCLPAKD 108 (353)
Q Consensus 81 ---~arkn~GyL~a~a~~I~~~DDDn~P~~~ 108 (353)
.+.+|.|+-.|..+||+.+|+|+.+..+
T Consensus 160 ~g~~~a~N~g~~~a~g~~v~~lD~D~~~~~~ 190 (625)
T 2z86_A 160 YQLCAVRNLGLRAAKYNYVAILDCDMAPNPL 190 (625)
T ss_dssp CCHHHHHHHHHHHCCSSEEEEECTTEEECTT
T ss_pred cchhHHHHHHHHhCCcCEEEEECCCCCCCHH
Confidence 1346778888889999999999999765
No 11
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=72.46 E-value=0.99 Score=45.65 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=46.7
Q ss_pred ceEEEEEecccChHHHHHHHhhc-----ccCceEEEEeCCCccccCCCCCCceEEeechhhhhhhccccchhh-cc----
Q 039651 10 EVDIVIAALQSDLTSFLNAWRPL-----FSRFHLIIVQDPDLKGELKIPQGFDHRVYTKSDIDQVIGPTTSIV-FS---- 79 (353)
Q Consensus 10 ~~~IVvttI~~~~~~fl~~~~~~-----~~~~~lvvV~D~d~~~~~ktP~g~~~~~~s~~~q~~~~~~~~~~i-~~---- 79 (353)
.+.|||||. +.. +++++.-++ ...+.+|||-|+.+ ++ +.+-.+++........ ..
T Consensus 376 ~vsiii~~y-n~~-~~l~~~l~s~~~q~~~~~eiivvdd~S~-------d~------t~~~~~~~~~~~~~i~~~~~~n~ 440 (625)
T 2z86_A 376 LVSIYIPAY-NCS-KYIVRCVESALNQTITDLEVCICDDGST-------DD------TLRILQEHYANHPRVRFISQKNK 440 (625)
T ss_dssp SEEEEEEES-SCT-TTHHHHHHHHHSSSCCSEEEEEEEESCS-------SS------HHHHHHHHHTTCTTEEEEEECCC
T ss_pred eEEEEEeCC-CCH-HHHHHHHHHHHhCcCCCeEEEEEECcCC-------hh------HHHHHHHHHhhCCcEEEEeCCCC
Confidence 599999998 544 444443333 34678999988422 11 1222222211111111 11
Q ss_pred -ccccceeeeeeEeeeeeeeccCCCCCCCC
Q 039651 80 -GYSCRYFGYLVSRKKYIISVDDDCLPAKD 108 (353)
Q Consensus 80 -s~arkn~GyL~a~a~~I~~~DDDn~P~~~ 108 (353)
-.+.+|.|+-.|..+||..+|+|..+..+
T Consensus 441 G~~~a~n~g~~~a~g~~i~~ld~D~~~~~~ 470 (625)
T 2z86_A 441 GIGSASNTAVRLCRGFYIGQLDSDDFLEPD 470 (625)
T ss_dssp CHHHHHHHHHHHCCSSEEEECCTTCEECTT
T ss_pred CHHHHHHHHHHhcCCCEEEEECCCcccChh
Confidence 11234555556668999999999998664
No 12
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=67.69 E-value=2.6 Score=41.94 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=26.5
Q ss_pred ceEEEEEecccChHHHHHHHhhcc-cCceEEEEeCC
Q 039651 10 EVDIVIAALQSDLTSFLNAWRPLF-SRFHLIIVQDP 44 (353)
Q Consensus 10 ~~~IVvttI~~~~~~fl~~~~~~~-~~~~lvvV~D~ 44 (353)
++.||||..+-+. .+++...... .++.+|+|-|+
T Consensus 54 klSIVVPvYNEe~-~lLesVl~qi~~d~eIIlVdDG 88 (391)
T 2wvl_A 54 QTAIVVPTRNERL-KLLEGVLSGIPHEALILVASNS 88 (391)
T ss_dssp TEEEEEEESSCCH-HHHHHHHHTSCTTSEEEEEECC
T ss_pred ceEEEEeccCcHH-HHHHHHHhcCCCCceEEEEECC
Confidence 5899999994455 7888876554 48889999994
No 13
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=63.76 E-value=1.3 Score=46.38 Aligned_cols=26 Identities=19% Similarity=0.037 Sum_probs=19.6
Q ss_pred ceeeeeeEe----eeeeeeccCCCCCCCCC
Q 039651 84 RYFGYLVSR----KKYIISVDDDCLPAKDN 109 (353)
Q Consensus 84 kn~GyL~a~----a~~I~~~DDDn~P~~~~ 109 (353)
+|.|.-+|. ++||+.+|||+.+..++
T Consensus 256 ~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~ 285 (657)
T 4fix_A 256 YSRVMYEALKNTDCQQILFMDDDIRLEPDS 285 (657)
T ss_dssp HHHHHHHHHHHCCCSEEEEECSSEEECTHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCccChhH
Confidence 455655554 48999999999998753
No 14
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=51.82 E-value=4.7 Score=35.97 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=24.0
Q ss_pred ccceeeeeeEeeeeeeeccCCCCCCCCC
Q 039651 82 SCRYFGYLVSRKKYIISVDDDCLPAKDN 109 (353)
Q Consensus 82 arkn~GyL~a~a~~I~~~DDDn~P~~~~ 109 (353)
+.+|.|.-.|..+||+++|.|+.+..++
T Consensus 64 ~a~N~Gi~~A~g~yl~fln~D~~~~~~~ 91 (249)
T 2nxv_A 64 SWHKQMLPRCKGRYVIFCHEDVELVDRG 91 (249)
T ss_dssp THHHHHGGGCCSSEEEEEETTEECSSCC
T ss_pred HHHHHHHHhcCCCEEEEECCCcccCccH
Confidence 4578898888899999999999996654
No 15
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=50.38 E-value=5.9 Score=42.10 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.0
Q ss_pred ceeeeeeEeeeeeeeccCCCCCCCC
Q 039651 84 RYFGYLVSRKKYIISVDDDCLPAKD 108 (353)
Q Consensus 84 kn~GyL~a~a~~I~~~DDDn~P~~~ 108 (353)
.|.|+-.|..|||+.+|+|+.+..+
T Consensus 230 lN~gl~~a~gd~Il~lDaD~~~~pd 254 (802)
T 4hg6_A 230 MSAALERLKGELVVVFDADHVPSRD 254 (802)
T ss_dssp HHHHHHHCCCSEEEECCTTEEECTT
T ss_pred HHHHHHhcCCCEEEEECCCCCcChH
Confidence 5677777779999999999999765
No 16
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=35.47 E-value=14 Score=35.39 Aligned_cols=71 Identities=18% Similarity=0.356 Sum_probs=48.8
Q ss_pred CceEEEEEeccc--ChHHHHHHHhhccc----CceEEEEeCCCccccCCCCCCceEEeechhhhhhhccccchhhccccc
Q 039651 9 SEVDIVIAALQS--DLTSFLNAWRPLFS----RFHLIIVQDPDLKGELKIPQGFDHRVYTKSDIDQVIGPTTSIVFSGYS 82 (353)
Q Consensus 9 ~~~~IVvttI~~--~~~~fl~~~~~~~~----~~~lvvV~D~d~~~~~ktP~g~~~~~~s~~~q~~~~~~~~~~i~~s~a 82 (353)
-.+.||||==+| .+..||..+.++++ +++++||--.|. ..+..+.++
T Consensus 51 ~kvAIIIPyRdR~~hL~~fl~~lhp~L~rQ~l~y~I~VieQ~~~----------------------~~FNRa~Ll----- 103 (287)
T 3lw6_A 51 HKMALLVPFRDRFEELLQFVPHMTAFLKRQGVAHHIFVLNQVDR----------------------FRFNRASLI----- 103 (287)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSS----------------------SCCCHHHHH-----
T ss_pred ceEEEEEEeCCHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCC----------------------Cccchhhee-----
Confidence 458999997534 34577777777775 555666653222 233334444
Q ss_pred cceeeeeeEe--eeeeeeccCCCCCCCC
Q 039651 83 CRYFGYLVSR--KKYIISVDDDCLPAKD 108 (353)
Q Consensus 83 rkn~GyL~a~--a~~I~~~DDDn~P~~~ 108 (353)
|+||+.|. .+|+++=|=|-+|.++
T Consensus 104 --NvGf~ea~~~~d~~ifHDVDLlP~dd 129 (287)
T 3lw6_A 104 --NVGFQFASDVYDYIAMHDVDLLPLND 129 (287)
T ss_dssp --HHHHHHSCTTCCEEEEECTTEEECCT
T ss_pred --cccHHHHhccCCEEEEecccccccCC
Confidence 88999987 7899999999999876
No 17
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=33.13 E-value=21 Score=32.87 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCeeeeccceeeecC--CCCchhhhHhhhh
Q 039651 242 CGMCVKVICDHLSIGVKTGLPYVFRSD--KGNPIESLKKEWE 281 (353)
Q Consensus 242 ~g~~~qri~~~lG~~V~fg~P~v~~~r--~h~~l~Dl~~E~~ 281 (353)
.+--.+..+...|..+.+-+|+.-..+ +..++..||+++.
T Consensus 255 ~~~~~~~~l~~~~~~~~~~p~~spdlnpie~~~~~~lk~~~~ 296 (345)
T 3hot_A 255 TARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALA 296 (345)
T ss_dssp TSHHHHHHHHHTTCEECCCCTTCGGGCHHHHTHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCcEeccCCCCCCCcccccchhhHHHHHHhc
Confidence 344567778888999999999887777 3356666665443
No 18
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.31 E-value=46 Score=25.28 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCC
Q 039651 329 RAAEAMVEWVKIWKAAGASHSTPG 352 (353)
Q Consensus 329 ~~a~~m~~W~~~l~~l~~~~~~~~ 352 (353)
...+-|..|+++|++.-....+|+
T Consensus 84 ~s~~e~~~Wi~al~~~~~~~~~p~ 107 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGSGPSSG 107 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSCSSSCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCC
Confidence 346668889999988866666665
No 19
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.53 E-value=2.1e+02 Score=22.66 Aligned_cols=61 Identities=21% Similarity=0.409 Sum_probs=41.3
Q ss_pred eeecCCCCchhhhHhhhhhhhhhcchHHhhhcccCCCCCCCHHHHHHHHHHH-HHhhcCCCChHHHHHHHHHHHHHHHHH
Q 039651 264 VFRSDKGNPIESLKKEWEGVKKMEEIIPFFQSVRLPRTATTAEDCLLEMAKS-VKDRLGGTDPLFARAAEAMVEWVKIWK 342 (353)
Q Consensus 264 v~~~r~h~~l~Dl~~E~~g~~~~e~ii~fl~~~~~~~~a~t~~~c~~eLa~~-v~~~l~~~~~f~~~~a~~m~~W~~~l~ 342 (353)
..|..+.+.+.-++.|++| +|--|+++...+ + .|++++=.. |+| .+.+-+.|+ ++
T Consensus 27 l~~~~~s~~yl~~k~eLq~------Li~~LDev~~~~---N--pcIReaRRrAV~E------------vQ~lit~lD-lk 82 (89)
T 2d9d_A 27 LQAQNPSELYLSSKTELQG------LIGQLDEVSLEK---N--PCIREARRRAVIE------------VQTLITYID-LK 82 (89)
T ss_dssp HHCSCTTTHHHHHHHHHHH------HHHHHGGGCSCS---S--HHHHHHHHHHHHH------------HHHHHHHHH-HH
T ss_pred HHhcCchHHHhhhHHHHHH------HHHHHhhcccCC---C--hHHHHHHHHHHHH------------HHHHHHHHH-HH
Confidence 3455578888899999999 677788876632 2 699988775 433 344555663 66
Q ss_pred HhCCCC
Q 039651 343 AAGASH 348 (353)
Q Consensus 343 ~l~~~~ 348 (353)
+-|+.+
T Consensus 83 ea~~~~ 88 (89)
T 2d9d_A 83 ESGPSS 88 (89)
T ss_dssp HCCCSC
T ss_pred hhCCCC
Confidence 666543
No 20
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B
Probab=21.63 E-value=2.3e+02 Score=26.91 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=40.5
Q ss_pred hhhhcchHHhhhcccCCCCCCCHHHHHHHHHHHHHh---hc--------CCCChHHHH----HHHHHHHHHHHHH-----
Q 039651 283 VKKMEEIIPFFQSVRLPRTATTAEDCLLEMAKSVKD---RL--------GGTDPLFAR----AAEAMVEWVKIWK----- 342 (353)
Q Consensus 283 ~~~~e~ii~fl~~~~~~~~a~t~~~c~~eLa~~v~~---~l--------~~~~~f~~~----~a~~m~~W~~~l~----- 342 (353)
++..+.+...|++--.|-+..+|++|...|...-|. .. .++..+|.. .++.+..-+++-+
T Consensus 17 l~~i~~~~~~L~~~~~Pv~~~t~~~c~~~l~~~sK~Lg~~m~~l~~~a~~~~~~~~g~a~~~~a~al~~Lteaa~~aayl 96 (309)
T 2x0c_A 17 LRQLETVRELLENPVQPINDMSYFGCLDSVMENSKVLGEAMTGISQNAKNGNLPEFGDAIATASKALCGFTEAAAQAAYL 96 (309)
T ss_dssp HHHHHHHGGGGTCCCSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHcCChhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344444555543444789999999998875333 11 124456755 5666666666666
Q ss_pred -HhCCCCCCCC
Q 039651 343 -AAGASHSTPG 352 (353)
Q Consensus 343 -~l~~~~~~~~ 352 (353)
.+-.++|.||
T Consensus 97 vgVs~p~s~~g 107 (309)
T 2x0c_A 97 VGVSDPNSQAG 107 (309)
T ss_dssp HHHHSTTCBCC
T ss_pred hhccccccccC
Confidence 4545555555
Done!