BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039652
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 265 bits (677), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/288 (50%), Positives = 189/288 (65%), Gaps = 35/288 (12%)
Query: 1 MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
MR+YDPN+ LEALRGSNIE+ LG+PN DL+ + +N + A +WVQ NVR F ++V+F+YI
Sbjct: 31 MRIYDPNQAVLEALRGSNIELILGVPNSDLQSL-TNPSNAKSWVQKNVRGFWSSVRFRYI 89
Query: 61 AVGNDAKPGDN----FAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRG 116
AVGN+ P + AQ+++PAMRNI A+ AGL +QIKVSTAI+ +G S+PPS G
Sbjct: 90 AVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAG 149
Query: 117 SFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADN-RQISLDYALFRKPAGVA----- 170
+F+ D R L+P+IRFL+ RSPLL N+YPYF A N R ISL YALF P+ V
Sbjct: 150 AFRDDVRSYLNPIIRFLSSIRSPLLANIYPYFTYAGNPRDISLPYALFTSPSVVVWDGQR 209
Query: 171 GHRDIGERVAD---------------------GW--WGRALTNVDNARTYNNNLIQHVKR 207
G++++ + D GW G DN RTY +NLIQHVKR
Sbjct: 210 GYKNLFDATLDALYSALERASGGSLEVVVSESGWPSAGAFAATFDNGRTYLSNLIQHVKR 269
Query: 208 RSPKKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN 255
+PK+P R IETY+FAMFDEN KK PE E+H+GLF PN+ +Y +NF+
Sbjct: 270 GTPKRPKRAIETYLFAMFDEN-KKQPEVEKHFGLFFPNKWQKYNLNFS 316
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/284 (46%), Positives = 182/284 (64%), Gaps = 31/284 (10%)
Query: 1 MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
MRLYDPN+ AL+ALR SNI+V L +P D++ +ASN + A W++ NV + +V F+YI
Sbjct: 30 MRLYDPNQAALQALRNSNIQVLLDVPRSDVQSLASNPSAAGDWIRRNVVAYWPSVSFRYI 89
Query: 61 AVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 120
AVGN+ PG + AQY++PAMRNI +A++ AGL NQIKVSTA++TG LG S+PPS G+F
Sbjct: 90 AVGNELIPGSDLAQYILPAMRNIYNALSSAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSS 149
Query: 121 DYRPILDPLIRFLNENRSPLLVNLYPYFAIADN-RQISLDYALFRKPAGVA-----GHRD 174
+ L P+++FL N +PLLVN+YPYF+ N QISL YALF V +++
Sbjct: 150 AAQAYLSPIVQFLASNGAPLLVNVYPYFSYTGNPGQISLPYALFTASGVVVQDGRFSYQN 209
Query: 175 IGERVAD---------------------GW---WGRALTNVDNARTYNNNLIQHVKRRSP 210
+ + + D GW G A + NA+TYN NLI+HV +P
Sbjct: 210 LFDAIVDAVFAALERVGGANVAVVVSESGWPSAGGGAEASTSNAQTYNQNLIRHVGGGTP 269
Query: 211 KKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINF 254
++PG+ IE YIF MF+EN K G E+++GLF PN+QP YQI+F
Sbjct: 270 RRPGKEIEAYIFEMFNENQKAG-GIEQNFGLFYPNKQPVYQISF 312
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 234 bits (597), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 178/285 (62%), Gaps = 31/285 (10%)
Query: 1 MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
MR+Y P+ AL+GSNIE+ L +PN DL +A N + AN WVQ+N+RN +VKFKYI
Sbjct: 32 MRIYYPHTNVFNALKGSNIEIILDVPNQDLEALA-NPSNANGWVQDNIRNHFPDVKFKYI 90
Query: 61 AVGNDAKPG---DNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGS 117
AVGN+ PG +A+++ PAM NI +A++ AGL NQIKVST+ +G L ++PP
Sbjct: 91 AVGNEVDPGRESGKYARFVGPAMENIYNALSSAGLQNQIKVSTSTYSGLLTNTYPPRDSI 150
Query: 118 FKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQ-ISLDYALF----RKPAGVA-- 170
F+++Y+ ++P+I FL + PLL N+YPYF DN + L YALF R G
Sbjct: 151 FREEYKSFINPIIGFLARHNLPLLANIYPYFGHIDNTNAVPLSYALFNQQRRNDTGYQNL 210
Query: 171 ---------------GHRDIGERVADGWW---GRALTNVDNARTYNNNLIQHVKR--RSP 210
G ++I V++ W G + NARTY NLI HVKR +P
Sbjct: 211 FDALVDSMYFATEKLGGQNIEIIVSESGWPSEGHPAATLKNARTYYTNLINHVKRGAGTP 270
Query: 211 KKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN 255
KKPG+ IETY+FAMFDEN KKG +E+H+GLF P+++P+YQ+NFN
Sbjct: 271 KKPGKTIETYLFAMFDENEKKGEASEKHFGLFNPDQRPKYQLNFN 315
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 234 bits (596), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 128/285 (44%), Positives = 180/285 (63%), Gaps = 31/285 (10%)
Query: 1 MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
MR+Y P+ AL+GSNIE+ L +PN DL +A N + AN WVQ+N+RN +VKFKYI
Sbjct: 32 MRIYYPHTNVFNALKGSNIEIILDVPNQDLEALA-NPSNANGWVQDNIRNHFPDVKFKYI 90
Query: 61 AVGNDAKPG---DNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGS 117
AVGN+ PG +A+++ PAM NI +A++ AGL NQIKVST+ +G L ++PP
Sbjct: 91 AVGNEVDPGRESGKYARFVGPAMENIYNALSSAGLQNQIKVSTSTYSGLLTNTYPPRDSI 150
Query: 118 FKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQ-ISLDYALF-RKPAGVAGHRDI 175
F+++Y+ ++P+I FL + PLL N+YPYF DN + L YALF ++ G++++
Sbjct: 151 FREEYKSFINPIIGFLARHNLPLLANIYPYFGHIDNTNAVPLSYALFNQQRRNDTGYQNL 210
Query: 176 GERVAD---------------------GW--WGRALTNVDNARTYNNNLIQHVKR--RSP 210
+ + D GW G + NARTY NLI HVKR +P
Sbjct: 211 FDALVDSMYFATEKLGGQNIEIIVSASGWPSEGHPAATLKNARTYYTNLINHVKRGAGTP 270
Query: 211 KKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINFN 255
KKPG+ IETY+FAMFDEN KKG +E+H+GLF P+++P+YQ+NFN
Sbjct: 271 KKPGKTIETYLFAMFDENEKKGEASEKHFGLFNPDQRPKYQLNFN 315
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 158/283 (55%), Gaps = 35/283 (12%)
Query: 1 MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
MRLY PN+ AL+A+ G+ I V +G PND L +A++ A A +WV++N++ + V F+Y+
Sbjct: 30 MRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASPAAAASWVKSNIQAYP-KVSFRYV 88
Query: 61 AVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 120
VGN+ G + LVPAM+N+ A+ AGLG IKV+T++ LG PPS GSF
Sbjct: 89 CVGNEVAGGAT--RNLVPAMKNVHGALVAAGLG-HIKVTTSVSQAILGVFSPPSAGSFTG 145
Query: 121 DYRPILDPLIRFLNENRSPLLVNLYPYFAIADN-RQISLDYALFRKPA-----GVAGHRD 174
+ + P+++FL +PL+ N+YPY A A N + + YALF G G+++
Sbjct: 146 EAAAFMGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALFNASGTVVRDGAYGYQN 205
Query: 175 IGERVAD---------------------GW--WGRALTNVDNARTYNNNLIQHVKRRSPK 211
+ + D GW G NAR YN +LI HV R +P+
Sbjct: 206 LFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSGGGTAATPANARFYNQHLINHVGRGTPR 265
Query: 212 KPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINF 254
PG IETYIFAMF+EN +K E++WGLF PN Q Y INF
Sbjct: 266 HPGA-IETYIFAMFNEN-QKDSGVEQNWGLFYPNMQHVYPINF 306
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 152/284 (53%), Gaps = 37/284 (13%)
Query: 1 MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 60
MR+Y + +AL ALR S I + L + ND L IA++ + A +WVQNNVR + V KYI
Sbjct: 30 MRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASWVQNNVRPYYPAVNIKYI 89
Query: 61 AVGNDAKPGDNFAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 120
A GN+ + G Q ++PAMRN+ +A++ A IKVST+I + SFPPS G FK
Sbjct: 90 AAGNEVQGGAT--QSILPAMRNLNAALS-AAGLGAIKVSTSIRFDEVANSFPPSAGVFKN 146
Query: 121 DYRPILDPLIRFLNENRSPLLVNLYPYFAIADN-RQISLDYALFRKPAGV---------- 169
Y + + R L +PLL N+YPYFA DN ISL+YA F+ V
Sbjct: 147 AY---MTDVARLLASTGAPLLANVYPYFAYRDNPGSISLNYATFQPGTTVRDQNNGLTYT 203
Query: 170 ----------------AGHRDIGERVADGWW---GRALTNVDNARTYNNNLIQHVKRRSP 210
AG + V++ W G + NARTYN LI HV +P
Sbjct: 204 SLFDAMVDAVYAALEKAGAPAVKVVVSESGWPSAGGFAASAGNARTYNQGLINHVGGGTP 263
Query: 211 KKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINF 254
KK +ETYIFAMF+EN K G TER +GLF P++ P Y I F
Sbjct: 264 KKR-EALETYIFAMFNENQKTGDATERSFGLFNPDKSPAYNIQF 306
>pdb|4F8X|A Chain A, Penicillium Canescens Endo-1,4-Beta-Xylanase Xyle
Length = 335
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 20/157 (12%)
Query: 52 ANNVKFKYIAVGNDAKPGDNFAQYL--VPAMRNIQSAVNGAGLGNQIKVSTAIETGALGE 109
AN+VK Y G + PG L V +R ++G GL + V ET +L +
Sbjct: 171 ANDVKLYYNDYGIE-NPGTKSTAVLQLVSNLRKRGIRIDGVGLESHFIVG---ETPSLAD 226
Query: 110 SFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGV 169
+ K + LD + L+ S + PY+ A +Q + DY +
Sbjct: 227 QLATKQAYIKAN----LDVAVTELDVRFSTV-----PYYTAAAQKQQAEDYYVSVASCMN 277
Query: 170 AGHRDIGERVAD-----GWWGRALTNVDNARTYNNNL 201
AG R IG V D W A A +NN L
Sbjct: 278 AGPRCIGVVVWDFDDAYSWVPSAFAGQGGACLFNNTL 314
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 179 VADGWWGRALTNVDNARTYNNNLIQHVKRRSP 210
V DGW+ L N NAR YN LI R P
Sbjct: 269 VDDGWYRLRLVNASNARIYNLVLIDEDDRPVP 300
>pdb|2QSF|X Chain X, Crystal Structure Of The Rad4-Rad23 Complex
pdb|2QSG|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Uv-Damaged Dna
pdb|2QSH|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Mismatch Dna
Length = 171
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 72 FAQYLVPAM-RNIQSAVNGAG---LGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILD 127
F L+ A+ N+Q + GA G I+V+ LG+ GSF+ DY P D
Sbjct: 74 FVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQG--EGEGSFQVDYTPEDD 131
Query: 128 PLIRFLNENRSPLLVNLYPYFAIADNRQ 155
I L E + + YFA N +
Sbjct: 132 QAISRLCELGFERDLVIQVYFACDKNEE 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,066,318
Number of Sequences: 62578
Number of extensions: 342105
Number of successful extensions: 1082
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1049
Number of HSP's gapped (non-prelim): 11
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)