Query 039652
Match_columns 255
No_of_seqs 124 out of 929
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 11:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 7.2E-78 1.6E-82 552.8 14.5 252 1-254 30-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 5E-33 1.1E-37 246.4 13.1 209 1-246 79-305 (305)
3 PF03198 Glyco_hydro_72: Gluca 97.4 0.00086 1.9E-08 62.1 8.8 126 1-148 70-217 (314)
4 PF07745 Glyco_hydro_53: Glyco 95.7 0.056 1.2E-06 50.7 8.5 209 10-248 63-325 (332)
5 PRK10150 beta-D-glucuronidase; 80.9 51 0.0011 33.1 14.3 67 179-250 506-583 (604)
6 PF11790 Glyco_hydro_cc: Glyco 79.6 32 0.00069 30.4 11.1 161 54-248 63-232 (239)
7 PF00150 Cellulase: Cellulase 73.5 12 0.00026 32.7 6.7 93 8-100 65-172 (281)
8 cd02875 GH18_chitobiase Chitob 63.9 59 0.0013 30.6 9.6 91 6-99 65-157 (358)
9 COG3867 Arabinogalactan endo-1 63.1 10 0.00023 35.5 4.1 172 54-249 169-385 (403)
10 cd02874 GH18_CFLE_spore_hydrol 63.0 22 0.00048 32.4 6.3 85 6-92 46-138 (313)
11 cd00598 GH18_chitinase-like Th 48.3 34 0.00073 28.7 4.7 83 9-92 53-142 (210)
12 cd06545 GH18_3CO4_chitinase Th 46.8 50 0.0011 29.2 5.7 81 9-92 50-133 (253)
13 PHA01735 hypothetical protein 41.5 17 0.00036 26.6 1.4 26 35-68 33-58 (76)
14 smart00636 Glyco_18 Glycosyl h 41.5 86 0.0019 28.6 6.6 79 11-90 57-142 (334)
15 PF06117 DUF957: Enterobacteri 40.9 40 0.00086 24.2 3.2 39 39-89 12-54 (65)
16 PF07799 DUF1643: Protein of u 37.5 35 0.00076 27.3 3.0 39 112-152 22-62 (136)
17 cd02872 GH18_chitolectin_chito 34.0 1.7E+02 0.0038 27.0 7.5 78 12-90 62-150 (362)
18 PRK00124 hypothetical protein; 33.2 39 0.00084 28.3 2.6 51 1-51 1-68 (151)
19 COG4213 XylF ABC-type xylose t 30.9 1.5E+02 0.0032 28.0 6.2 79 4-100 171-249 (341)
20 cd06156 eu_AANH_C_2 A group of 28.9 1E+02 0.0022 24.2 4.3 29 72-100 31-59 (118)
21 KOG0093 GTPase Rab3, small G p 26.4 88 0.0019 26.6 3.6 79 2-92 73-158 (193)
22 cd02873 GH18_IDGF The IDGF's ( 23.9 1.5E+02 0.0033 28.4 5.3 81 11-92 65-187 (413)
23 PF00232 Glyco_hydro_1: Glycos 23.4 19 0.0004 35.0 -1.1 92 9-105 103-224 (455)
24 PRK08944 motB flagellar motor 23.3 1.6E+02 0.0036 27.2 5.2 71 75-145 143-217 (302)
25 PF15560 Imm8: Immunity protei 22.9 1.8E+02 0.0039 23.8 4.6 54 59-119 6-66 (133)
26 PF10671 TcpQ: Toxin co-regula 22.5 1.9E+02 0.004 21.2 4.4 34 113-146 38-71 (84)
27 KOG1462 Translation initiation 22.2 2.4E+02 0.0053 27.4 6.1 110 10-153 46-155 (433)
28 PF06722 DUF1205: Protein of u 22.0 81 0.0018 24.2 2.4 27 8-34 64-90 (97)
29 PF02055 Glyco_hydro_30: O-Gly 21.2 1.6E+02 0.0034 29.3 4.8 62 39-100 205-278 (496)
30 cd06150 YjgF_YER057c_UK114_lik 20.2 1.2E+02 0.0026 22.9 3.1 22 72-93 27-48 (105)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=7.2e-78 Score=552.75 Aligned_cols=252 Identities=49% Similarity=0.910 Sum_probs=207.1
Q ss_pred CccccCCHHHHHHHhCCCCeEEEEcCcccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCCCchhhHHHHH
Q 039652 1 MRLYDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAM 80 (255)
Q Consensus 1 vrlyd~d~~vl~A~~~t~i~v~vgv~n~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~Lv~am 80 (255)
|||||+|+++|+||++|||+|+|+|+|++|+++++++..|..||++||.+|+|+++|++|+||||++...+ ...|||||
T Consensus 30 vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~~~-~~~lvpAm 108 (310)
T PF00332_consen 30 VRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTGTD-NAYLVPAM 108 (310)
T ss_dssp EEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCCSG-GGGHHHHH
T ss_pred EEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhcccccCcccceeeeecccccccCcc-ceeeccHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999998653 23899999
Q ss_pred HHHHHHHHhCCCCCceEEecccccCcccccCCCCccccccCchhhhHHHHHHHhhcCCcceeccccccccccC-cccccc
Q 039652 81 RNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADN-RQISLD 159 (255)
Q Consensus 81 ~nv~~aL~~~gL~~~IkVsT~~s~~~l~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~sp~~vNiyPyf~~~~~-~~~~l~ 159 (255)
+|+|++|.+.||+++|||+|+|++++|..+||||+|.|++++.++|+++++||.+|+||||+|+||||+|..+ ..++|+
T Consensus 109 ~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~ 188 (310)
T PF00332_consen 109 QNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLD 188 (310)
T ss_dssp HHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HH
T ss_pred HHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHHHhhccCCCceeccchhhhccCCcccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred cccccCCCccccCCCCC----------------C-------c--e-eeccC--CCCCCCHHHHHHHHHHHHhccccCCCC
Q 039652 160 YALFRKPAGVAGHRDIG----------------E-------R--V-ADGWW--GRALTNVDNARTYNNNLIQHVKRRSPK 211 (255)
Q Consensus 160 yalf~~~~~~~~~~~~~----------------~-------k--v-EtGWP--G~~~as~~na~~y~~~li~~~~~GTp~ 211 (255)
||+|++++..+ |+++. + + | ||||| |+.+|+++||++|++|+++|+.+|||+
T Consensus 189 yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~~gt~~ 267 (310)
T PF00332_consen 189 YALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGDPGATPENAQAYNQNLIKHVLKGTPL 267 (310)
T ss_dssp HHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCCGBBSS
T ss_pred ccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCCCCCCcchhHHHHHHHHHHHhCCCcc
Confidence 99999876665 55432 1 1 7 99999 778999999999999999999999999
Q ss_pred CCCCCceEEEEeeecCCCCCCCCCCceeeeecCCCCceeeecc
Q 039652 212 KPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQPRYQINF 254 (255)
Q Consensus 212 rp~~~i~~yiF~lfdE~~K~g~~~E~~wGlf~~d~~~ky~~~~ 254 (255)
||+..+++||||||||+||+++.+|||||||++||++||+|+|
T Consensus 268 ~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 268 RPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp SBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred cCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999999999999999999998899999999999999999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-33 Score=246.40 Aligned_cols=209 Identities=20% Similarity=0.313 Sum_probs=160.2
Q ss_pred CccccCCH----HHHHHHhCCCCeEEEEcCcccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCCC-chhh
Q 039652 1 MRLYDPNR----EALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDN-FAQY 75 (255)
Q Consensus 1 vrlyd~d~----~vl~A~~~t~i~v~vgv~n~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~-~~~~ 75 (255)
||+|..|| .|++|.+..|+++.+||+..+- +. .+.++-+...++++.....|++|+||||.|.+++ .+.+
T Consensus 79 IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd--~~---~~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasq 153 (305)
T COG5309 79 IRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDD--IH---DAVEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQ 153 (305)
T ss_pred EEEeeccchhhhhhHHHHHhcCceEEEEEeeccc--hh---hhHHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHH
Confidence 79999887 6678999999999999986431 11 2223244556888888899999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhCCCCCceEEecccccCcccccCCCCccccccCchhhhHHHHHHHhhcCCcceeccccccccccCcc
Q 039652 76 LVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADNRQ 155 (255)
Q Consensus 76 Lv~am~nv~~aL~~~gL~~~IkVsT~~s~~~l~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~sp~~vNiyPyf~~~~~~~ 155 (255)
|..+|..+|.+|+++|.+ .+|+|+++|.++.+. |. |++..+++|+|.||||......+
T Consensus 154 l~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n-------------p~-------l~~~SDfia~N~~aYwd~~~~a~ 211 (305)
T COG5309 154 LIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN-------------PE-------LCQASDFIAANAHAYWDGQTVAN 211 (305)
T ss_pred HHHHHHHHHHHHHhcCCC--CceeecccceeeeCC-------------hH-------Hhhhhhhhhcccchhccccchhh
Confidence 999999999999999996 579999999988652 23 34455678999999999875422
Q ss_pred cccccccccCCCccccC-CCCCCc---e-eeccC--C----CCCCCHHHHHHHHHHHHhccccCCCCCCCCCceEEEEee
Q 039652 156 ISLDYALFRKPAGVAGH-RDIGER---V-ADGWW--G----RALTNVDNARTYNNNLIQHVKRRSPKKPGRPIETYIFAM 224 (255)
Q Consensus 156 ~~l~yalf~~~~~~~~~-~~~~~k---v-EtGWP--G----~~~as~~na~~y~~~li~~~~~GTp~rp~~~i~~yiF~l 224 (255)
.. +.++..+-..++. .+. +| | ||||| | ++.||++||..|.++++|.++. . .+++|+||+
T Consensus 212 ~~--~~f~~~q~e~vqsa~g~-~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~------~-G~d~fvfeA 281 (305)
T COG5309 212 AA--GTFLLEQLERVQSACGT-KKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS------C-GYDVFVFEA 281 (305)
T ss_pred hh--hHHHHHHHHHHHHhcCC-CccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc------c-CccEEEeee
Confidence 22 1222111123331 121 24 8 99999 4 4689999999999999997731 2 579999999
Q ss_pred ecCCCCCCC--CCCceeeeecCCC
Q 039652 225 FDENGKKGP--ETERHWGLFAPNR 246 (255)
Q Consensus 225 fdE~~K~g~--~~E~~wGlf~~d~ 246 (255)
|||+||..+ ++|+|||+++.|+
T Consensus 282 Fdd~WK~~~~y~VEkywGv~~s~~ 305 (305)
T COG5309 282 FDDDWKADGSYGVEKYWGVLSSDR 305 (305)
T ss_pred ccccccCccccchhhceeeeccCC
Confidence 999999864 6899999999875
No 3
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.39 E-value=0.00086 Score=62.06 Aligned_cols=126 Identities=23% Similarity=0.352 Sum_probs=69.6
Q ss_pred CccccCCH-----HHHHHHhCCCCeEEEEcCcc--cHHHhhhCHHHHHHHHH-------hhcccCCCCceEEEEEecccc
Q 039652 1 MRLYDPNR-----EALEALRGSNIEVTLGLPND--DLRRIASNQAEANTWVQ-------NNVRNFANNVKFKYIAVGNDA 66 (255)
Q Consensus 1 vrlyd~d~-----~vl~A~~~t~i~v~vgv~n~--~l~~la~~~~~A~~Wv~-------~nv~~~~~~~~I~~I~VGNEv 66 (255)
||+|.-|| +-+++|+..||=|++.+... .|.+-. + +..|=. .-|..+..-.++-+..+||||
T Consensus 70 IRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r~~--P--~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 70 IRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINRSD--P--APSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp EEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--TTS----------HHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccCCC--C--cCCCCHHHHHHHHHHHHHhccCCceEEEEeccee
Confidence 69997654 56899999999999988643 333322 1 123322 223334444788999999999
Q ss_pred CCCCC---chhhHHHHHHHHHHHHHhCCCCCceEEecccccCcccccCCCCccccccCchhhhHHHHHHHh-----hcCC
Q 039652 67 KPGDN---FAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLN-----ENRS 138 (255)
Q Consensus 67 l~~~~---~~~~Lv~am~nv~~aL~~~gL~~~IkVsT~~s~~~l~~s~pPS~g~F~~~~~~~~~~~l~fL~-----~~~s 138 (255)
+.... .++.+-.+.|.+|+-+++.++ .+|+|+-+-+- ....-.++.+||. +.-+
T Consensus 146 in~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsaaD-----------------~~~~r~~~a~Yl~Cg~~~~~iD 207 (314)
T PF03198_consen 146 INDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSAAD-----------------DAEIRQDLANYLNCGDDDERID 207 (314)
T ss_dssp S-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--------------------TTTHHHHHHHTTBTT-----S
T ss_pred ecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEccC-----------------ChhHHHHHHHHhcCCCcccccc
Confidence 97542 677888889999999999888 46899865321 1122335667765 3456
Q ss_pred cceecccccc
Q 039652 139 PLLVNLYPYF 148 (255)
Q Consensus 139 p~~vNiyPyf 148 (255)
.+.+|.|-|=
T Consensus 208 f~g~N~Y~WC 217 (314)
T PF03198_consen 208 FFGLNSYEWC 217 (314)
T ss_dssp -EEEEE----
T ss_pred eeeeccceec
Confidence 7888888764
No 4
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.66 E-value=0.056 Score=50.72 Aligned_cols=209 Identities=14% Similarity=0.211 Sum_probs=97.4
Q ss_pred HHHHHhCCCCeEEEEcCc---------ccHHH------hhhCHHHHHHHHHhhcccC-CCCceEEEEEeccccCCC----
Q 039652 10 ALEALRGSNIEVTLGLPN---------DDLRR------IASNQAEANTWVQNNVRNF-ANNVKFKYIAVGNDAKPG---- 69 (255)
Q Consensus 10 vl~A~~~t~i~v~vgv~n---------~~l~~------la~~~~~A~~Wv~~nv~~~-~~~~~I~~I~VGNEvl~~---- 69 (255)
..+..+..|.+|+|..-- +.+|. +++=..+..++.++-+... ..++....|-||||+-.+
T Consensus 63 ~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp 142 (332)
T PF07745_consen 63 LAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWP 142 (332)
T ss_dssp HHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBT
T ss_pred HHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCc
Confidence 345556789999887631 11211 1111123334444433322 135788999999998542
Q ss_pred -C-C-chhhHHHHHHHHHHHHHhCCCCCceEEecccccCcccccCCCCccccccCchhhhHHHHHHHhh---cCCcceec
Q 039652 70 -D-N-FAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNE---NRSPLLVN 143 (255)
Q Consensus 70 -~-~-~~~~Lv~am~nv~~aL~~~gL~~~IkVsT~~s~~~l~~s~pPS~g~F~~~~~~~~~~~l~fL~~---~~sp~~vN 143 (255)
+ . ..+.+...++.-.+|+++.+ ..+||-.-.. . |-.. ..++-..+-|.. -=|.+.++
T Consensus 143 ~g~~~~~~~~a~ll~ag~~AVr~~~--p~~kV~lH~~-----~--~~~~--------~~~~~~f~~l~~~g~d~DviGlS 205 (332)
T PF07745_consen 143 DGKPSNWDNLAKLLNAGIKAVREVD--PNIKVMLHLA-----N--GGDN--------DLYRWFFDNLKAAGVDFDVIGLS 205 (332)
T ss_dssp TTCTT-HHHHHHHHHHHHHHHHTHS--STSEEEEEES--------TTSH--------HHHHHHHHHHHHTTGG-SEEEEE
T ss_pred CCCccCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEC-----C--CCch--------HHHHHHHHHHHhcCCCcceEEEe
Confidence 1 1 44566777777777777644 3455543211 1 1011 122223333333 23678999
Q ss_pred cccccccccCcccccccccccCCCccccCCCCCCc--e-eeccC-C----C--C------------CCCHHHHHHHHHHH
Q 039652 144 LYPYFAIADNRQISLDYALFRKPAGVAGHRDIGER--V-ADGWW-G----R--A------------LTNVDNARTYNNNL 201 (255)
Q Consensus 144 iyPyf~~~~~~~~~l~yalf~~~~~~~~~~~~~~k--v-EtGWP-G----~--~------------~as~~na~~y~~~l 201 (255)
.||||...-+ . +..+-..+. ..++++ | ||||| . + . .+|++.++.|.+.+
T Consensus 206 yYP~w~~~l~-~-------l~~~l~~l~-~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l 276 (332)
T PF07745_consen 206 YYPFWHGTLE-D-------LKNNLNDLA-SRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDL 276 (332)
T ss_dssp E-STTST-HH-H-------HHHHHHHHH-HHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHH
T ss_pred cCCCCcchHH-H-------HHHHHHHHH-HHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHH
Confidence 9999876211 1 111000000 112123 7 99999 3 1 0 25899999999999
Q ss_pred HhccccCCCCCCCCCceEEEEe-eecCCC-----CCCCCCCceeeeecCCCCc
Q 039652 202 IQHVKRRSPKKPGRPIETYIFA-MFDENG-----KKGPETERHWGLFAPNRQP 248 (255)
Q Consensus 202 i~~~~~GTp~rp~~~i~~yiF~-lfdE~~-----K~g~~~E~~wGlf~~d~~~ 248 (255)
++.+.. .|- +..+-+|+-| ..-... ..|...|.. +||+.++++
T Consensus 277 ~~~v~~-~p~--~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~ 325 (332)
T PF07745_consen 277 INAVKN-VPN--GGGLGVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNA 325 (332)
T ss_dssp HHHHHT-S----TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB
T ss_pred HHHHHH-hcc--CCeEEEEeeccccccCCcccccCCCCCcccc-ccCCCCCCC
Confidence 998832 111 2245566554 222222 223334444 899988865
No 5
>PRK10150 beta-D-glucuronidase; Provisional
Probab=80.87 E-value=51 Score=33.15 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=44.9
Q ss_pred e-eeccC---C-----CCCCCHHHHHHHHHHHHhccccCCCCCCCCCceEEEEeeecCCCCCCC--CCCceeeeecCCCC
Q 039652 179 V-ADGWW---G-----RALTNVDNARTYNNNLIQHVKRRSPKKPGRPIETYIFAMFDENGKKGP--ETERHWGLFAPNRQ 247 (255)
Q Consensus 179 v-EtGWP---G-----~~~as~~na~~y~~~li~~~~~GTp~rp~~~i~~yiF~lfdE~~K~g~--~~E~~wGlf~~d~~ 247 (255)
+ |.|+. | ...-+.+.+..|++...+.+.+ +|. -+-.||..+||=....|. ....+.||++.||+
T Consensus 506 isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~----~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~ 580 (604)
T PRK10150 506 ITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR----VPA-VVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQ 580 (604)
T ss_pred EEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc----CCc-eEEEEEEeeeccCCCCCCcccCCCcceeEcCCCC
Confidence 6 99965 2 1234677887877766665532 344 567999999995554431 12347899999999
Q ss_pred cee
Q 039652 248 PRY 250 (255)
Q Consensus 248 ~ky 250 (255)
||-
T Consensus 581 ~k~ 583 (604)
T PRK10150 581 PKS 583 (604)
T ss_pred ChH
Confidence 984
No 6
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=79.58 E-value=32 Score=30.43 Aligned_cols=161 Identities=10% Similarity=0.143 Sum_probs=88.4
Q ss_pred CceEEEEEeccccCCCCC---chhhHHHHHHHHHHHHHhCCCCCceEEecccccCcccccCCCCccccccCchhhhHHHH
Q 039652 54 NVKFKYIAVGNDAKPGDN---FAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLI 130 (255)
Q Consensus 54 ~~~I~~I~VGNEvl~~~~---~~~~Lv~am~nv~~aL~~~gL~~~IkVsT~~s~~~l~~s~pPS~g~F~~~~~~~~~~~l 130 (255)
...+++|..=||+=...+ .+++.+...+.+.+.|+. ..+|+..|.-...-. . +|+. .+-|+..+
T Consensus 63 ~~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~~~-~-~~~g-------~~Wl~~F~ 129 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PGVKLGSPAVAFTNG-G-TPGG-------LDWLSQFL 129 (239)
T ss_pred ccCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CCcEEECCeecccCC-C-CCCc-------cHHHHHHH
Confidence 457889999999976543 567777777777777763 357888763211100 0 1111 13444333
Q ss_pred HHHhhcCCcceeccccccccccCcccccccccccCCCcccc--CCCCCCc--e-eeccC-CCCCCCHHHHHHHHHHHHhc
Q 039652 131 RFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGVAG--HRDIGER--V-ADGWW-GRALTNVDNARTYNNNLIQH 204 (255)
Q Consensus 131 ~fL~~~~sp~~vNiyPyf~~~~~~~~~l~yalf~~~~~~~~--~~~~~~k--v-EtGWP-G~~~as~~na~~y~~~li~~ 204 (255)
+-+...+.+=.+++|.| ..+ + .-|.. .+. ...+++. | |.|+. +....+.+.+..|.+..+..
T Consensus 130 ~~~~~~~~~D~iavH~Y---~~~--~----~~~~~---~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ 197 (239)
T PF11790_consen 130 SACARGCRVDFIAVHWY---GGD--A----DDFKD---YIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPW 197 (239)
T ss_pred HhcccCCCccEEEEecC---CcC--H----HHHHH---HHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHH
Confidence 33221223335566666 111 0 00111 111 0112222 8 99988 66678999999999999998
Q ss_pred cccCCCCCCCCCceEEEEeeecCCCCCCCCCCceeeeecCCCCc
Q 039652 205 VKRRSPKKPGRPIETYIFAMFDENGKKGPETERHWGLFAPNRQP 248 (255)
Q Consensus 205 ~~~GTp~rp~~~i~~yiF~lfdE~~K~g~~~E~~wGlf~~d~~~ 248 (255)
+.+ ++. --.+++|...+.. ......-.|++.||++
T Consensus 198 ld~----~~~-VeryawF~~~~~~----~~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 198 LDS----QPY-VERYAWFGFMNDG----SGVNPNSALLDADGSL 232 (239)
T ss_pred Hhc----CCC-eeEEEeccccccc----CCCccccccccCCCCc
Confidence 842 233 2357788722222 2345566777777754
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=73.47 E-value=12 Score=32.67 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=58.7
Q ss_pred HHHHHHHhCCCCeEEEEcCcc-cH---HHhhhCHHHHHHHHHh---hcccCC-CCceEEEEEeccccCCCCC-------c
Q 039652 8 REALEALRGSNIEVTLGLPND-DL---RRIASNQAEANTWVQN---NVRNFA-NNVKFKYIAVGNDAKPGDN-------F 72 (255)
Q Consensus 8 ~~vl~A~~~t~i~v~vgv~n~-~l---~~la~~~~~A~~Wv~~---nv~~~~-~~~~I~~I~VGNEvl~~~~-------~ 72 (255)
..+|++++..||.|+|.+-+. .. ...........+|+++ .+...+ ....|.++=+.||+..... .
T Consensus 65 d~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~ 144 (281)
T PF00150_consen 65 DRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQN 144 (281)
T ss_dssp HHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHH
T ss_pred HHHHHHHHhCCCeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCcccccccc
Confidence 367899999999999988653 00 0111122333444333 233333 3345779999999987532 2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCceEEec
Q 039652 73 AQYLVPAMRNIQSAVNGAGLGNQIKVST 100 (255)
Q Consensus 73 ~~~Lv~am~nv~~aL~~~gL~~~IkVsT 100 (255)
...+.+.++.+.+++++.+-+..|-|+.
T Consensus 145 ~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 145 PADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp THHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred chhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 3678899999999999998765454443
No 8
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=63.88 E-value=59 Score=30.58 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=54.8
Q ss_pred CCHHHHHHHhCCCCeEEEEcCcccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCC-CC-chhhHHHHHHHH
Q 039652 6 PNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPG-DN-FAQYLVPAMRNI 83 (255)
Q Consensus 6 ~d~~vl~A~~~t~i~v~vgv~n~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~-~~-~~~~Lv~am~nv 83 (255)
.|++++......|++|++..... ... .+++..-..++++ +..++..-.+.+|-+==|-... +. ....+..-|+.+
T Consensus 65 ~~~~~~~~A~~~~v~v~~~~~~~-~~~-l~~~~~R~~fi~s-iv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkel 141 (358)
T cd02875 65 IDDELLCYAHSKGVRLVLKGDVP-LEQ-ISNPTYRTQWIQQ-KVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKET 141 (358)
T ss_pred CCHHHHHHHHHcCCEEEEECccC-HHH-cCCHHHHHHHHHH-HHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHH
Confidence 47899988888999999875322 222 3455555556555 3333322234455554444322 11 356788999999
Q ss_pred HHHHHhCCCCCceEEe
Q 039652 84 QSAVNGAGLGNQIKVS 99 (255)
Q Consensus 84 ~~aL~~~gL~~~IkVs 99 (255)
+++|.+.+.+-.+.|.
T Consensus 142 r~~l~~~~~~~~Lsva 157 (358)
T cd02875 142 TKAFKKENPGYQISFD 157 (358)
T ss_pred HHHHhhcCCCcEEEEE
Confidence 9999987653334333
No 9
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=63.14 E-value=10 Score=35.46 Aligned_cols=172 Identities=20% Similarity=0.253 Sum_probs=85.8
Q ss_pred CceEEEEEeccccCCC-----CC--chhhHHHHHHHHHHHHHhCCCCCceEEecccccCcccccCCCCccccccCchhhh
Q 039652 54 NVKFKYIAVGNDAKPG-----DN--FAQYLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPIL 126 (255)
Q Consensus 54 ~~~I~~I~VGNEvl~~-----~~--~~~~Lv~am~nv~~aL~~~gL~~~IkVsT~~s~~~l~~s~pPS~g~F~~~~~~~~ 126 (255)
+..+..+-||||.-.+ +. ....+-.-++.--+|++... ..|||---. .+ |-..+.|+-=.+.+-
T Consensus 169 Gi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lHl-----a~--g~~n~~y~~~fd~lt 239 (403)
T COG3867 169 GILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALHL-----AE--GENNSLYRWIFDELT 239 (403)
T ss_pred CCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEEe-----cC--CCCCchhhHHHHHHH
Confidence 5678899999999642 11 22334444444445555432 457765422 22 222334431111111
Q ss_pred HHHHHHHhhcCCcceeccccccccccCcccccccccccCCCccccCCCCCCc--e-eecc--C---CC------------
Q 039652 127 DPLIRFLNENRSPLLVNLYPYFAIADNRQISLDYALFRKPAGVAGHRDIGER--V-ADGW--W---GR------------ 186 (255)
Q Consensus 127 ~~~l~fL~~~~sp~~vNiyPyf~~~~~~~~~l~yalf~~~~~~~~~~~~~~k--v-EtGW--P---G~------------ 186 (255)
+.-++| +.|..--||||.+.-+ .|.+-|-. + ...+.+. | ||+- - |+
T Consensus 240 k~nvdf-----DVig~SyYpyWhgtl~---nL~~nl~d-----i-a~rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t 305 (403)
T COG3867 240 KRNVDF-----DVIGSSYYPYWHGTLN---NLTTNLND-----I-ASRYHKDVMVVETAYTYTLEDGDGHENTFPSSEQT 305 (403)
T ss_pred HcCCCc-----eEEeeeccccccCcHH---HHHhHHHH-----H-HHHhcCeEEEEEecceeeeccCCCCCCcCCccccc
Confidence 112222 4677788999886422 22222211 0 0112222 6 8875 2 32
Q ss_pred --CCCCHHHHHHHHHHHHhcc-ccC--------------CCCCCCCCceE-EEEeeecCCCCCCCCCCceeeeecCCCCc
Q 039652 187 --ALTNVDNARTYNNNLIQHV-KRR--------------SPKKPGRPIET-YIFAMFDENGKKGPETERHWGLFAPNRQP 248 (255)
Q Consensus 187 --~~as~~na~~y~~~li~~~-~~G--------------Tp~rp~~~i~~-yiF~lfdE~~K~g~~~E~~wGlf~~d~~~ 248 (255)
-..+++-+.+|.+.+|..+ ..+ .|.+++....+ |--+--.|+|+.|..++.. -||+-+|.|
T Consensus 306 ~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~ 384 (403)
T COG3867 306 GGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHP 384 (403)
T ss_pred CCCceEEechhhHHHHHHHHHHhCCCCCceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCc
Confidence 1357788999999999988 211 23333322222 2223345777776544433 577777665
Q ss_pred e
Q 039652 249 R 249 (255)
Q Consensus 249 k 249 (255)
-
T Consensus 385 L 385 (403)
T COG3867 385 L 385 (403)
T ss_pred C
Confidence 4
No 10
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=62.97 E-value=22 Score=32.38 Aligned_cols=85 Identities=15% Similarity=0.271 Sum_probs=53.7
Q ss_pred CCHHHHHHHhCCCCeEEEEcCccc--------HHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCCCchhhHH
Q 039652 6 PNREALEALRGSNIEVTLGLPNDD--------LRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLV 77 (255)
Q Consensus 6 ~d~~vl~A~~~t~i~v~vgv~n~~--------l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~Lv 77 (255)
.++.++.+.+..++++++.|.+.. ...+.+++..-...++ +|..++..-.+.+|-+-=|.+... ....++
T Consensus 46 ~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~~~~~-d~~~~~ 123 (313)
T cd02874 46 PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDFENVPPE-DREAYT 123 (313)
T ss_pred CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEecccCCHH-HHHHHH
Confidence 357888888888999999997532 3455666553333333 344433222344555554654322 355788
Q ss_pred HHHHHHHHHHHhCCC
Q 039652 78 PAMRNIQSAVNGAGL 92 (255)
Q Consensus 78 ~am~nv~~aL~~~gL 92 (255)
.-|+.++++|.+.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987664
No 11
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=48.32 E-value=34 Score=28.69 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=48.3
Q ss_pred HHHHHHhCC--CCeEEEEcCcccHH---HhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCCC--chhhHHHHHH
Q 039652 9 EALEALRGS--NIEVTLGLPNDDLR---RIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDN--FAQYLVPAMR 81 (255)
Q Consensus 9 ~vl~A~~~t--~i~v~vgv~n~~l~---~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~--~~~~Lv~am~ 81 (255)
.-++.++.. |++|++++....-. .++++....+..+++ +..+...-++.+|-+==|.....+ ....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~-~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANS-LVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHH-HHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 445666665 99999999753322 345555544443333 333333334555555444433221 2578999999
Q ss_pred HHHHHHHhCCC
Q 039652 82 NIQSAVNGAGL 92 (255)
Q Consensus 82 nv~~aL~~~gL 92 (255)
.++++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987644
No 12
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=46.85 E-value=50 Score=29.19 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCeEEEEcCccc---HHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCCCchhhHHHHHHHHHH
Q 039652 9 EALEALRGSNIEVTLGLPNDD---LRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAMRNIQS 85 (255)
Q Consensus 9 ~vl~A~~~t~i~v~vgv~n~~---l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~Lv~am~nv~~ 85 (255)
..+++++..|++|++.|.+.. ...+.+++.....++++ +..++..-.+.+|-+-=|-... ....++.-++.+++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~--~~~~~~~fv~~Lr~ 126 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDV--TFGDYLVFIRALYA 126 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCc--cHhHHHHHHHHHHH
Confidence 456777778999999887643 22344565555555444 3333222233444444344321 13457778999999
Q ss_pred HHHhCCC
Q 039652 86 AVNGAGL 92 (255)
Q Consensus 86 aL~~~gL 92 (255)
+|.+.|+
T Consensus 127 ~l~~~~~ 133 (253)
T cd06545 127 ALKKEGK 133 (253)
T ss_pred HHhhcCc
Confidence 9987654
No 13
>PHA01735 hypothetical protein
Probab=41.54 E-value=17 Score=26.61 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=20.5
Q ss_pred hCHHHHHHHHHhhcccCCCCceEEEEEeccccCC
Q 039652 35 SNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKP 68 (255)
Q Consensus 35 ~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~ 68 (255)
++..+|.+|+++| .|+++.|-|..|.
T Consensus 33 aDL~AA~d~Lk~N--------dItgv~~~gspl~ 58 (76)
T PHA01735 33 ADLRAACDWLKSN--------DITGVAVDGSPLA 58 (76)
T ss_pred HHHHHHHHHHHHC--------CCceeeCCCCHHH
Confidence 4667999999997 6888888876653
No 14
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=41.49 E-value=86 Score=28.57 Aligned_cols=79 Identities=15% Similarity=0.324 Sum_probs=47.1
Q ss_pred HHHHhCC--CCeEEEEcCc----ccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCC-CchhhHHHHHHHH
Q 039652 11 LEALRGS--NIEVTLGLPN----DDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGD-NFAQYLVPAMRNI 83 (255)
Q Consensus 11 l~A~~~t--~i~v~vgv~n----~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~-~~~~~Lv~am~nv 83 (255)
|.+++.. +++|+++|.. +....++++.......+++ |..++..-.+.+|-+==|..... .....++.-|+.+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~~-i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFIDS-IVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHHH-HHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 5566654 8999998875 3456666665544443332 33333223455666544544321 1245688889999
Q ss_pred HHHHHhC
Q 039652 84 QSAVNGA 90 (255)
Q Consensus 84 ~~aL~~~ 90 (255)
+++|.+.
T Consensus 136 r~~l~~~ 142 (334)
T smart00636 136 REALDKE 142 (334)
T ss_pred HHHHHHh
Confidence 9999864
No 15
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=40.87 E-value=40 Score=24.18 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=27.1
Q ss_pred HHHHHHHhhcccCCCCceEEEEEeccccCCCCC----chhhHHHHHHHHHHHHHh
Q 039652 39 EANTWVQNNVRNFANNVKFKYIAVGNDAKPGDN----FAQYLVPAMRNIQSAVNG 89 (255)
Q Consensus 39 ~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~----~~~~Lv~am~nv~~aL~~ 89 (255)
--.+|+++||.- |+|.+..++ ....|+|+++..++.++.
T Consensus 12 iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~ 54 (65)
T PF06117_consen 12 ILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRP 54 (65)
T ss_pred HHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHH
Confidence 345799998653 445554332 457899999999888764
No 16
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=37.53 E-value=35 Score=27.28 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=27.3
Q ss_pred CCCccccccCchhhhHHHHHHHhh--cCCcceecccccccccc
Q 039652 112 PPSRGSFKQDYRPILDPLIRFLNE--NRSPLLVNLYPYFAIAD 152 (255)
Q Consensus 112 pPS~g~F~~~~~~~~~~~l~fL~~--~~sp~~vNiyPyf~~~~ 152 (255)
|.++..+.+ ++.++.++.|... -+...|+|+||+.+-.+
T Consensus 22 PS~A~~~~~--D~T~~~~~~~a~~~gyg~~~i~NLf~~~~t~p 62 (136)
T PF07799_consen 22 PSTADAEKD--DPTIRRCINFARRWGYGGVIIVNLFPQRSTDP 62 (136)
T ss_pred CCCCCCcCC--CHHHHHHHHHHhhcCCCeEEEEEecccccCCH
Confidence 444444444 3677788888765 56788999999987543
No 17
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=34.04 E-value=1.7e+02 Score=27.00 Aligned_cols=78 Identities=13% Similarity=0.247 Sum_probs=43.9
Q ss_pred HHHhC--CCCeEEEEcCc-----ccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCC---CC-chhhHHHHH
Q 039652 12 EALRG--SNIEVTLGLPN-----DDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPG---DN-FAQYLVPAM 80 (255)
Q Consensus 12 ~A~~~--t~i~v~vgv~n-----~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~---~~-~~~~Lv~am 80 (255)
.+++. .+++|+++|.. +....+++++......+++ +..++..-.+.+|-+==|.... .+ ....++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34444 58999988852 1356666666544444443 3333222233344333333221 11 346789999
Q ss_pred HHHHHHHHhC
Q 039652 81 RNIQSAVNGA 90 (255)
Q Consensus 81 ~nv~~aL~~~ 90 (255)
+.++++|.+.
T Consensus 141 ~~lr~~l~~~ 150 (362)
T cd02872 141 KELREAFEPE 150 (362)
T ss_pred HHHHHHHHhh
Confidence 9999999987
No 18
>PRK00124 hypothetical protein; Validated
Probab=33.24 E-value=39 Score=28.29 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=33.2
Q ss_pred Cccc-cCC-----HHHHHHHhCCCCeEEE-EcCcccH----------HHhhhCHHHHHHHHHhhcccC
Q 039652 1 MRLY-DPN-----REALEALRGSNIEVTL-GLPNDDL----------RRIASNQAEANTWVQNNVRNF 51 (255)
Q Consensus 1 vrly-d~d-----~~vl~A~~~t~i~v~v-gv~n~~l----------~~la~~~~~A~~Wv~~nv~~~ 51 (255)
|||| |+| .++.++....+++|++ .=.|..+ --+.+..++|+.|+-+++.+-
T Consensus 1 m~I~VDADACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~g 68 (151)
T PRK00124 1 MKIYVDADACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKG 68 (151)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCC
Confidence 5677 776 3677888889999976 4123222 113445678888888877765
No 19
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=30.88 E-value=1.5e+02 Score=28.05 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=53.8
Q ss_pred ccCCHHHHHHHhCCCCeEEEEcCcccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCCCchhhHHHHHHHH
Q 039652 4 YDPNREALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAMRNI 83 (255)
Q Consensus 4 yd~d~~vl~A~~~t~i~v~vgv~n~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~Lv~am~nv 83 (255)
|+--..||+++=.+|=-+.+|=. ..+. =+++.|..|+.+-+.+++- +|.+|+--|+-..++ +
T Consensus 171 ~~G~m~VLkp~idsGkik~~Ge~--~~d~--W~ps~Aq~~men~lta~~~--~vdaVvA~nDgtagG------------a 232 (341)
T COG4213 171 FAGAMKVLKPLIDSGKIKVVGEQ--WTDG--WLPSNAQQIMENLLTANYN--DIDAVVAPNDGTAGG------------A 232 (341)
T ss_pred HhcHHHHHHHHhhCCceEEeeec--cccc--cCHHHHHHHHHHHHhcccC--ceeEEEcCCCchhHH------------H
Confidence 34456899988888733335532 2222 2577899999998888864 488888887744332 2
Q ss_pred HHHHHhCCCCCceEEec
Q 039652 84 QSAVNGAGLGNQIKVST 100 (255)
Q Consensus 84 ~~aL~~~gL~~~IkVsT 100 (255)
-++|++.||+++++||=
T Consensus 233 I~aL~a~Gl~g~vpVsG 249 (341)
T COG4213 233 IAALKAQGLAGKVPVSG 249 (341)
T ss_pred HHHHHhcccCCCCcccC
Confidence 35788899999998764
No 20
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=28.86 E-value=1e+02 Score=24.18 Aligned_cols=29 Identities=3% Similarity=0.083 Sum_probs=23.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCCceEEec
Q 039652 72 FAQYLVPAMRNIQSAVNGAGLGNQIKVST 100 (255)
Q Consensus 72 ~~~~Lv~am~nv~~aL~~~gL~~~IkVsT 100 (255)
...++-.+|+||+..|+++|.++=+|+++
T Consensus 31 ~~~Q~~qal~Ni~~vL~~aG~~dVvk~~i 59 (118)
T cd06156 31 ITLQAVLSLQHLERVAKAMNVQWVLAAVC 59 (118)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 67799999999999999999943345553
No 21
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.38 E-value=88 Score=26.62 Aligned_cols=79 Identities=14% Similarity=0.330 Sum_probs=48.5
Q ss_pred ccccCC-HHHHHHH-----hC-CCCeEEEEcCcccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCCCchh
Q 039652 2 RLYDPN-REALEAL-----RG-SNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQ 74 (255)
Q Consensus 2 rlyd~d-~~vl~A~-----~~-t~i~v~vgv~n~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~ 74 (255)
.|||++ ++.++-+ ++ .|+-+|-.+.|++ +.++.++|+.+ | .++...++.-|+|||--=...+
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNee------Sf~svqdw~tq-I-ktysw~naqvilvgnKCDmd~e--- 141 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE------SFNSVQDWITQ-I-KTYSWDNAQVILVGNKCDMDSE--- 141 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCHH------HHHHHHHHHHH-h-eeeeccCceEEEEecccCCccc---
Confidence 467765 3444332 33 4788899999874 45667889875 3 4447788999999987643322
Q ss_pred hHHHHHHHHHHHHHhCCC
Q 039652 75 YLVPAMRNIQSAVNGAGL 92 (255)
Q Consensus 75 ~Lv~am~nv~~aL~~~gL 92 (255)
.+++ +...+.....+|+
T Consensus 142 Rvis-~e~g~~l~~~LGf 158 (193)
T KOG0093|consen 142 RVIS-HERGRQLADQLGF 158 (193)
T ss_pred eeee-HHHHHHHHHHhCh
Confidence 2222 3444555555565
No 22
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=23.89 E-value=1.5e+02 Score=28.37 Aligned_cols=81 Identities=11% Similarity=0.298 Sum_probs=45.9
Q ss_pred HHHHhC--CCCeEEEEcCc----------ccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEec---------------
Q 039652 11 LEALRG--SNIEVTLGLPN----------DDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVG--------------- 63 (255)
Q Consensus 11 l~A~~~--t~i~v~vgv~n----------~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VG--------------- 63 (255)
|.+|+. .+++++++|.. .....+++++..-...+++ +..++..-.+.+|-+-
T Consensus 65 ~~~lk~~~p~lKvllSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~s-iv~~l~~~~fDGidiDWEyP~~~~~~~~g~~ 143 (413)
T cd02873 65 ITSLKRKYPHLKVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINS-AHSLLKTYGFDGLDLAWQFPKNKPKKVRGTF 143 (413)
T ss_pred HHHHHhhCCCCeEEEeecCCCCCCCcccchhhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeEeeeeCCCCccccccccc
Confidence 456654 68999999962 1256677776654555444 3333222223333331
Q ss_pred -------------cccCCCC-C-chhhHHHHHHHHHHHHHhCCC
Q 039652 64 -------------NDAKPGD-N-FAQYLVPAMRNIQSAVNGAGL 92 (255)
Q Consensus 64 -------------NEvl~~~-~-~~~~Lv~am~nv~~aL~~~gL 92 (255)
+..+... + ..+.++.-|+.+|++|.+.++
T Consensus 144 ~~~~~~~~~~~~g~~~~~~~~~~d~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 144 GSAWHSFKKLFTGDSVVDEKAAEHKEQFTALVRELKNALRPDGL 187 (413)
T ss_pred chhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHhcccCc
Confidence 1111101 1 346688889999999987664
No 23
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=23.41 E-value=19 Score=35.04 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=48.8
Q ss_pred HHHHHHhCCCCeEEEEcCcccHHHhhhCHHHHHHHHHhhcccC--------CC--CceEEEEEeccccCCC-------C-
Q 039652 9 EALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNF--------AN--NVKFKYIAVGNDAKPG-------D- 70 (255)
Q Consensus 9 ~vl~A~~~t~i~v~vgv~n~~l~~la~~~~~A~~Wv~~nv~~~--------~~--~~~I~~I~VGNEvl~~-------~- 70 (255)
++|..|...||+-+|++.--++|.-- .....|....+..+ .. +.+|++-+.=||.... +
T Consensus 103 ~~i~~l~~~gi~P~vtL~H~~~P~~l---~~~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~ 179 (455)
T PF00232_consen 103 DLIDELLENGIEPIVTLYHFDLPLWL---EDYGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGG 179 (455)
T ss_dssp HHHHHHHHTT-EEEEEEESS--BHHH---HHHTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSS
T ss_pred HHHHHHHhhccceeeeeeecccccce---eecccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccceeecccccccc
Confidence 78899999999999999754555421 11223332222211 11 3567788888998531 1
Q ss_pred --C---chh-------hHHHHHHHHHHHHHhCCCCCceEEecccccC
Q 039652 71 --N---FAQ-------YLVPAMRNIQSAVNGAGLGNQIKVSTAIETG 105 (255)
Q Consensus 71 --~---~~~-------~Lv~am~nv~~aL~~~gL~~~IkVsT~~s~~ 105 (255)
+ ... .++-|--...+++++.+ .+-||+.+++..
T Consensus 180 ~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~--~~~~IGi~~~~~ 224 (455)
T PF00232_consen 180 FPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKY--PDGKIGIALNFS 224 (455)
T ss_dssp STTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHT--CTSEEEEEEEEE
T ss_pred ccccccccchhhHHHhhHHHHHHHHHHHHhhcc--cceEEecccccc
Confidence 0 112 24444444455566555 345677765543
No 24
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=23.26 E-value=1.6e+02 Score=27.16 Aligned_cols=71 Identities=10% Similarity=0.198 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCceEEecccccCccc----ccCCCCccccccCchhhhHHHHHHHhhcCCcceeccc
Q 039652 75 YLVPAMRNIQSAVNGAGLGNQIKVSTAIETGALG----ESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLY 145 (255)
Q Consensus 75 ~Lv~am~nv~~aL~~~gL~~~IkVsT~~s~~~l~----~s~pPS~g~F~~~~~~~~~~~l~fL~~~~sp~~vNiy 145 (255)
.+-..++.|+.+|.+..+++.|.|......-++. ..|++-....+++..+.|..+.+.|......+.|--|
T Consensus 143 ~~~~~~~~l~~~l~~~~~~~~v~v~~~~~~v~I~l~~~~~F~~gsa~L~~~~~~~L~~ia~~L~~~~~~I~I~GH 217 (302)
T PRK08944 143 QIEDLVKKLAQQLEKEIEDGAIEIESLGQQIIIRIREKGSFPSGSAFLQPKFKPVVRKIGELLKDVPGIITVSGH 217 (302)
T ss_pred HHHHHHHHHHHHHHHHhhcCceEEEEeCCEEEEEeCCCCeeCCCCcccCHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4455567888899988888888887765433331 1366666666666667888888888766555555433
No 25
>PF15560 Imm8: Immunity protein 8
Probab=22.92 E-value=1.8e+02 Score=23.77 Aligned_cols=54 Identities=19% Similarity=0.385 Sum_probs=39.8
Q ss_pred EEEeccccCCCCCchhhHHHHHHHHHHHHHhC-------CCCCceEEecccccCcccccCCCCccccc
Q 039652 59 YIAVGNDAKPGDNFAQYLVPAMRNIQSAVNGA-------GLGNQIKVSTAIETGALGESFPPSRGSFK 119 (255)
Q Consensus 59 ~I~VGNEvl~~~~~~~~Lv~am~nv~~aL~~~-------gL~~~IkVsT~~s~~~l~~s~pPS~g~F~ 119 (255)
-|++|-|.. ....+.|.++++|+.|++. ||+ +||+.-=.+.++ ++|=|+.|-++
T Consensus 6 n~ViGG~~~----~~~~~~~~ir~mRk~lKk~F~~~~~e~l~-k~kI~l~~sGdv--S~Y~~~sGIyq 66 (133)
T PF15560_consen 6 NIVIGGQID----AEKNLHSLIREMRKSLKKQFESIEFEGLD-KIKINLYFSGDV--SSYCDKSGIYQ 66 (133)
T ss_pred EEEEcCcch----HHHHHHHHHHHHHHHHHHHHHhhhHhhhh-hEeEEEEEcCch--hhhcCCCCcch
Confidence 456664432 3468999999999998865 774 689988888776 36778888765
No 26
>PF10671 TcpQ: Toxin co-regulated pilus biosynthesis protein Q; InterPro: IPR018927 The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonisation in the disease of cholera. TCP fibres are homopolymers of TcpA pilin, encoded by the first gene in the tcp biogenesis operon. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ. TcpQ is required for proper localisation of TcpC to the outer membrane [, ]. This entry represents a C-terminal domain found in TcpQ and other pilus biosynthesis proteins.; PDB: 3OV5_A 2L4W_A.
Probab=22.47 E-value=1.9e+02 Score=21.21 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=26.0
Q ss_pred CCccccccCchhhhHHHHHHHhhcCCcceecccc
Q 039652 113 PSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYP 146 (255)
Q Consensus 113 PS~g~F~~~~~~~~~~~l~fL~~~~sp~~vNiyP 146 (255)
++.-+|..+....++.+++-+...+.|+-+.+|+
T Consensus 38 ~~~~~~~gsf~~Av~~l~~~~~~~~~~l~~~~y~ 71 (84)
T PF10671_consen 38 DAPATFSGSFEDAVKQLFSAYNSAGYPLQVCFYQ 71 (84)
T ss_dssp -CCCCC-E-HHHHHHHHHHHHGGGTEEEEEETTE
T ss_pred cCceEecCcHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 4445677777788999999899999999999887
No 27
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=22.17 E-value=2.4e+02 Score=27.43 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=69.3
Q ss_pred HHHHHhCCCCeEEEEcCcccHHHhhhCHHHHHHHHHhhcccCCCCceEEEEEeccccCCCCCchhhHHHHHHHHHHHHHh
Q 039652 10 ALEALRGSNIEVTLGLPNDDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNDAKPGDNFAQYLVPAMRNIQSAVNG 89 (255)
Q Consensus 10 vl~A~~~t~i~v~vgv~n~~l~~la~~~~~A~~Wv~~nv~~~~~~~~I~~I~VGNEvl~~~~~~~~Lv~am~nv~~aL~~ 89 (255)
.|.-|..+|++=++-+-+++. ...-+.|+..+..-......+.+.+++||-+... ..++.++.-+++
T Consensus 46 pL~~L~~~gfteiiVv~~e~e------~~~i~~al~~~~~l~~~~~~v~ip~~~~~d~gta-------dsLr~Iy~kikS 112 (433)
T KOG1462|consen 46 PLNSLEQAGFTEIIVVVNEDE------KLDIESALGSNIDLKKRPDYVEIPTDDNSDFGTA-------DSLRYIYSKIKS 112 (433)
T ss_pred ehhHHHhcCCeEEEEEecHHH------HHHHHHHHhcCCcccccccEEEeecccccccCCH-------HHHhhhhhhhcc
Confidence 357777788765544444431 3345678888776665557789999999976432 345666665443
Q ss_pred CCCCCceEEecccccCcccccCCCCccccccCchhhhHHHHHHHhhcCCcceeccccccccccC
Q 039652 90 AGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLVNLYPYFAIADN 153 (255)
Q Consensus 90 ~gL~~~IkVsT~~s~~~l~~s~pPS~g~F~~~~~~~~~~~l~fL~~~~sp~~vNiyPyf~~~~~ 153 (255)
++-+-++ |.|-.|+. +.+++++...+++.+++=+++..+....
T Consensus 113 ---~Dflvls----------------CD~Vtdv~--l~~lvd~FR~~d~slamli~~~~s~~~~ 155 (433)
T KOG1462|consen 113 ---EDFLVLS----------------CDFVTDVP--LQPLVDKFRATDASLAMLIGNALSEVPI 155 (433)
T ss_pred ---CCEEEEe----------------cccccCCC--cHHHHHHHhccChhHhHHhccccccccc
Confidence 1112122 34444442 3488999999999999999887766543
No 28
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=21.95 E-value=81 Score=24.16 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCCeEEEEcCcccHHHhh
Q 039652 8 REALEALRGSNIEVTLGLPNDDLRRIA 34 (255)
Q Consensus 8 ~~vl~A~~~t~i~v~vgv~n~~l~~la 34 (255)
..+|.|+++-+++|.+.++..+...+.
T Consensus 64 ~~ll~ala~ldvEvV~a~~~~~~~~lg 90 (97)
T PF06722_consen 64 RRLLEALAGLDVEVVVALPAAQRAELG 90 (97)
T ss_dssp HHHHHHHHTSSSEEEEEETTCCCGGCC
T ss_pred HHHHHHHhhCCcEEEEECCHHHHHhhC
Confidence 588999999999999999987766553
No 29
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=21.18 E-value=1.6e+02 Score=29.32 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=41.1
Q ss_pred HHHHHHHhhcccCC-CCceEEEEEeccccCCC----C--C----chhhHHHHHHH-HHHHHHhCCCCCceEEec
Q 039652 39 EANTWVQNNVRNFA-NNVKFKYIAVGNDAKPG----D--N----FAQYLVPAMRN-IQSAVNGAGLGNQIKVST 100 (255)
Q Consensus 39 ~A~~Wv~~nv~~~~-~~~~I~~I~VGNEvl~~----~--~----~~~~Lv~am~n-v~~aL~~~gL~~~IkVsT 100 (255)
+=.+.+.+.|..|- .+..|-+|++.||+... . + .++++..-+++ +.-+|++.|++..+|+-.
T Consensus 205 ~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 205 AYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp HHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 33455556666663 46899999999999852 1 1 35566777776 999999999966688743
No 30
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.18 E-value=1.2e+02 Score=22.93 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHHHHHhCCCC
Q 039652 72 FAQYLVPAMRNIQSAVNGAGLG 93 (255)
Q Consensus 72 ~~~~Lv~am~nv~~aL~~~gL~ 93 (255)
...+.--+|+||++.|+++|.+
T Consensus 27 ~~~Q~~~~~~nl~~~L~~~G~~ 48 (105)
T cd06150 27 ITGQTRQVLAKIDALLAEAGSD 48 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 6789999999999999999864
Done!