Query 039654
Match_columns 225
No_of_seqs 187 out of 1456
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 20:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1E-38 3.5E-43 220.7 2.7 74 11-84 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 3.2E-38 1.1E-42 223.4 3.7 77 11-87 1-77 (90)
3 1hbx_A SRF, serum response fac 100.0 6.5E-38 2.2E-42 222.7 3.1 76 5-80 5-80 (92)
4 1mnm_A Protein (MCM1 transcrip 100.0 1.1E-37 3.8E-42 224.2 2.7 75 6-80 12-86 (100)
5 1k6o_B SRF, serum response fac 100.0 2.7E-37 9.3E-42 223.6 3.1 74 6-79 5-78 (103)
6 1g6u_A Domain swapped dimer; d 69.9 13 0.00046 21.4 4.9 29 143-171 15-43 (48)
7 1p9i_A Cortexillin I/GCN4 hybr 61.2 12 0.00043 19.6 3.3 26 148-173 2-27 (31)
8 2hv8_D RAB11 family-interactin 53.7 30 0.001 22.1 5.0 37 138-174 16-52 (64)
9 3nrf_A APAG protein; structura 52.4 1.2 4.1E-05 31.6 -2.0 50 20-76 21-70 (106)
10 2ke4_A CDC42-interacting prote 52.4 55 0.0019 22.6 9.9 66 99-166 15-80 (98)
11 1x79_B RAB GTPase binding effe 51.2 45 0.0015 23.8 6.1 27 146-172 57-83 (112)
12 2k48_A Nucleoprotein; viral pr 47.7 70 0.0024 22.4 7.7 68 94-170 30-97 (107)
13 1ik9_A DNA repair protein XRCC 47.4 1E+02 0.0035 24.3 9.5 26 150-175 177-202 (213)
14 1z56_A Ligase interacting fact 46.0 19 0.00064 29.3 3.7 27 19-45 118-144 (246)
15 3mwp_A Nucleoprotein; structur 44.0 33 0.0011 30.5 5.3 26 141-166 98-123 (577)
16 1deq_A Fibrinogen (alpha chain 42.7 1.4E+02 0.0048 25.9 8.9 17 38-54 24-40 (390)
17 1fxk_A Prefoldin; archaeal pro 35.7 65 0.0022 21.9 5.0 12 69-80 1-12 (107)
18 2phn_A F420-0:gamma-glutamyl l 33.6 8.4 0.00029 31.7 -0.1 29 43-71 138-166 (254)
19 1txp_A HnRNP C, heterogeneous 33.0 57 0.0019 17.1 3.3 18 148-165 6-23 (28)
20 1m2d_A [2Fe-2S] ferredoxin; th 32.2 21 0.00072 24.9 1.9 32 48-80 59-91 (110)
21 3sl9_C B-cell CLL/lymphoma 9 p 30.9 83 0.0028 18.8 4.0 25 139-163 4-28 (55)
22 1qoy_A Hemolysin E; toxin, mem 28.7 52 0.0018 27.8 3.9 107 51-166 196-302 (318)
23 2dfs_A Myosin-5A; myosin-V, in 28.4 2.9E+02 0.0099 27.3 9.8 23 149-171 1020-1042(1080)
24 2ic6_A Nucleocapsid protein; h 28.3 1.3E+02 0.0045 19.9 7.6 63 99-170 5-67 (78)
25 1lyp_A CAP18; lipopolysacchari 28.0 71 0.0024 16.7 3.9 23 150-172 6-28 (32)
26 3tnu_A Keratin, type I cytoske 27.7 1.7E+02 0.0058 21.0 7.5 27 100-126 39-65 (131)
27 3tnu_B Keratin, type II cytosk 27.5 1.7E+02 0.0058 20.9 8.4 29 99-127 36-64 (129)
28 4fi5_A Nucleoprotein; structur 26.4 1.7E+02 0.0059 20.7 7.5 65 98-171 21-85 (113)
29 2ky6_A Mediator of RNA polymer 26.1 36 0.0012 26.0 2.3 21 45-65 116-136 (166)
30 1ydm_A Hypothetical protein YQ 26.0 17 0.0006 28.0 0.5 10 216-225 131-140 (187)
31 3hls_A Guanylate cyclase solub 25.8 1.3E+02 0.0045 19.0 5.1 27 99-125 24-50 (66)
32 2zvv_Y Cyclin-dependent kinase 25.3 11 0.00039 19.2 -0.5 11 24-34 15-25 (26)
33 3tso_C RAB11 family-interactin 24.9 1.5E+02 0.0052 19.4 4.9 21 141-161 10-30 (75)
34 2ic9_A Nucleocapsid protein; h 24.5 1.8E+02 0.006 20.0 7.6 59 99-166 5-63 (96)
35 4gfh_A DNA topoisomerase 2; to 24.4 3.1E+02 0.011 27.5 9.2 42 35-80 958-999 (1177)
36 3fx7_A Putative uncharacterize 24.4 1.4E+02 0.0048 20.5 4.8 29 145-173 6-34 (94)
37 3rrk_A V-type ATPase 116 kDa s 23.7 2.2E+02 0.0075 23.7 7.2 43 70-117 200-244 (357)
38 2rpa_A Katanin P60 ATPase-cont 23.1 32 0.0011 22.9 1.3 33 38-81 16-48 (78)
39 1l8d_A DNA double-strand break 23.1 83 0.0028 21.7 3.7 17 28-44 27-43 (112)
40 3mq7_A Bone marrow stromal ant 22.9 1.6E+02 0.0056 21.0 5.1 19 149-167 86-104 (121)
41 3ghg_A Fibrinogen alpha chain; 22.9 74 0.0025 28.9 4.0 9 71-79 51-59 (562)
42 1s94_A S-syntaxin; three helix 22.2 2.5E+02 0.0085 21.0 9.6 27 147-173 80-106 (180)
43 2cly_B ATP synthase D chain, m 22.2 1.6E+02 0.0055 22.1 5.3 13 140-152 125-137 (160)
44 1j1d_C Troponin I, TNI; THIN f 22.1 2.3E+02 0.008 20.6 9.6 20 140-159 53-72 (133)
45 1kaf_A Transcription regulator 22.1 15 0.00052 26.0 -0.5 52 15-81 23-75 (108)
46 1j1e_C Troponin I, TNI; THIN f 21.6 2.8E+02 0.0095 21.3 8.6 19 140-158 53-71 (180)
47 2z5i_A TM, general control pro 21.5 1.4E+02 0.0049 17.9 4.7 28 98-125 11-38 (52)
48 3efg_A Protein SLYX homolog; x 20.9 1.8E+02 0.0063 19.0 5.0 6 101-106 16-21 (78)
49 1lj9_A Transcriptional regulat 20.6 1.6E+02 0.0055 20.3 5.0 31 140-170 110-140 (144)
50 2k1v_A Insulin-like peptide IN 20.3 30 0.001 17.9 0.6 9 41-49 14-22 (26)
51 1dd4_C 50S ribosomal protein L 20.2 79 0.0027 18.1 2.4 21 140-160 8-28 (40)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1e-38 Score=220.73 Aligned_cols=74 Identities=39% Similarity=0.758 Sum_probs=70.1
Q ss_pred CccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhcCCCC
Q 039654 11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPP 84 (225)
Q Consensus 11 gR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~~~~~ 84 (225)
||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||+||...++|
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999986644
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=3.2e-38 Score=223.39 Aligned_cols=77 Identities=39% Similarity=0.731 Sum_probs=73.8
Q ss_pred CccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhcCCCCCCC
Q 039654 11 GRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPPQIS 87 (225)
Q Consensus 11 gR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~~~~~~~~ 87 (225)
||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||+||...+++...
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~ 77 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHES 77 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987766543
No 3
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=6.5e-38 Score=222.71 Aligned_cols=76 Identities=34% Similarity=0.525 Sum_probs=72.8
Q ss_pred CCCCCCCccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhc
Q 039654 5 SSKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLT 80 (225)
Q Consensus 5 ~~~~~mgR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~ 80 (225)
.+|++|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||++|..
T Consensus 5 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 5 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred cCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999998753
No 4
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.1e-37 Score=224.25 Aligned_cols=75 Identities=36% Similarity=0.554 Sum_probs=70.8
Q ss_pred CCCCCCccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhc
Q 039654 6 SKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLT 80 (225)
Q Consensus 6 ~~~~mgR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~ 80 (225)
++++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+++.|+++|..
T Consensus 12 ~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp ---CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999974
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=2.7e-37 Score=223.63 Aligned_cols=74 Identities=35% Similarity=0.542 Sum_probs=71.9
Q ss_pred CCCCCCccceeeEeeCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhh
Q 039654 6 SKKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYL 79 (225)
Q Consensus 6 ~~~~mgR~Ki~i~~I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~ 79 (225)
+|++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||+++.
T Consensus 5 ~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~ 78 (103)
T 1k6o_B 5 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 78 (103)
T ss_dssp CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHH
T ss_pred CCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999853
No 6
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=69.93 E-value=13 Score=21.36 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039654 143 EELNLPQLEQLKMSLEELKKNVGKQAEKM 171 (225)
Q Consensus 143 ~~Ls~eEL~~L~~~Le~l~~~V~~r~~~L 171 (225)
++.+.+||-.|+..|..+-+++..-+.+|
T Consensus 15 egfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999988887777776655554
No 7
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=61.18 E-value=12 Score=19.56 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039654 148 PQLEQLKMSLEELKKNVGKQAEKMLI 173 (225)
Q Consensus 148 eEL~~L~~~Le~l~~~V~~r~~~L~~ 173 (225)
+||..|..+||.-.+.+..+.++|+.
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777666667777666654
No 8
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=53.72 E-value=30 Score=22.13 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=31.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039654 138 WEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQ 174 (225)
Q Consensus 138 w~~~l~~Ls~eEL~~L~~~Le~l~~~V~~r~~~L~~q 174 (225)
+...+++++.+||.+....-++..+.++.-++.|+..
T Consensus 16 lAae~~~~s~deL~~~l~eqee~n~~Le~YID~LL~~ 52 (64)
T 2hv8_D 16 LAAEISSVSRDELMEAIQKQEEINFRLQDYIDRIIVA 52 (64)
T ss_dssp HHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999888888888899989988643
No 9
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=52.42 E-value=1.2 Score=31.64 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=36.3
Q ss_pred eCCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhh
Q 039654 20 MPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVD 76 (225)
Q Consensus 20 I~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~ 76 (225)
|.++.....||-=.-..|.++.-+|+.+| ++.|+|.|+-|-. ..|++.|.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l--dTVde~L~ 70 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL--DTVDEELT 70 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE--EEECGGGG
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe--cccchhhh
Confidence 34555666777778888899999999888 9999999986533 33444443
No 10
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=52.39 E-value=55 Score=22.64 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 039654 99 ASVRELNMQLTQVLNQLEIEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGK 166 (225)
Q Consensus 99 ~~i~~l~~ql~~l~~~le~ekk~~e~L~~l~k~~~~~~~w~~~l~~Ls~eEL~~L~~~Le~l~~~V~~ 166 (225)
.+...|..++.++..+++++....+.|.+|...-....-+| +...+ ..+|.+....|+.+...+..
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~G-D~~s~-~~~L~e~~~kid~L~~el~K 80 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMG-DPASL-EPQIAETLSNIERLKLEVQK 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGC-CGGGS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 35567888888998988888888888888887632222233 22333 66778777777776665543
No 11
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=51.15 E-value=45 Score=23.78 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039654 146 NLPQLEQLKMSLEELKKNVGKQAEKML 172 (225)
Q Consensus 146 s~eEL~~L~~~Le~l~~~V~~r~~~L~ 172 (225)
+...|..|.+.....+..|..++.+|.
T Consensus 57 sE~~L~~Lqq~fsq~q~~vq~qL~~Lt 83 (112)
T 1x79_B 57 SEILLEELQQGLSQAKRDVQEQMAVLM 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788888888887775
No 12
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=47.68 E-value=70 Score=22.45 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=38.1
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 039654 94 EAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEK 170 (225)
Q Consensus 94 E~~~~~~i~~l~~ql~~l~~~le~ekk~~e~L~~l~k~~~~~~~w~~~l~~Ls~eEL~~L~~~Le~l~~~V~~r~~~ 170 (225)
+....+.+.+|+.++.....+|..-..+ ++.+. .-.+.+.|+++..-+++-...+..+..++++-+.+
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQK------LkdAe---~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrq 97 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQK------LKDAE---KAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQ 97 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567788888888877777543322 11111 11245677777666666666555555555544433
No 13
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=47.40 E-value=1e+02 Score=24.34 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039654 150 LEQLKMSLEELKKNVGKQAEKMLIQS 175 (225)
Q Consensus 150 L~~L~~~Le~l~~~V~~r~~~L~~q~ 175 (225)
+..|...|.+++.+||...++|+.++
T Consensus 177 ~~KF~~lLNeKK~KIR~lq~~Ll~~~ 202 (213)
T 1ik9_A 177 YKRFILVLNEKKTKIRSLHNKLLNAA 202 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35788899999999999998887543
No 14
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=45.99 E-value=19 Score=29.27 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=0.0
Q ss_pred eeCCCCccchhhhcccchHHHHHHHHh
Q 039654 19 KMPNESNLQVTFSKRRTGLFKKASELC 45 (225)
Q Consensus 19 ~I~n~~~R~vTFsKRr~GL~KKA~ELs 45 (225)
.|+....-++|+.||-.||..|..+|.
T Consensus 118 ~iev~~~~~itmrkri~~Itqrlg~lt 144 (246)
T 1z56_A 118 RMQDDEVWKVVMELESSAIIRKIAELT 144 (246)
T ss_dssp ---------------------------
T ss_pred CceeCCEEEEEEeehhhHHHhhheeEE
Confidence 345566779999999999999877764
No 15
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=43.96 E-value=33 Score=30.51 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=23.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 039654 141 PIEELNLPQLEQLKMSLEELKKNVGK 166 (225)
Q Consensus 141 ~l~~Ls~eEL~~L~~~Le~l~~~V~~ 166 (225)
.+.+|+-+||..|..-||.++++|.+
T Consensus 98 kvG~LskdeLm~LasDLeKLK~KV~r 123 (577)
T 3mwp_A 98 RVGTLTSDDLLILAADLEKLKSKVIR 123 (577)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcCHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999865
No 16
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.68 E-value=1.4e+02 Score=25.88 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=9.6
Q ss_pred HHHHHHHhhhccCcEEE
Q 039654 38 FKKASELCTLCGADIAI 54 (225)
Q Consensus 38 ~KKA~ELs~LC~aeva~ 54 (225)
+-+|..-|---|+..|+
T Consensus 24 vE~~~s~Ck~~d~~~C~ 40 (390)
T 1deq_A 24 VERQQSACKETGWPFCS 40 (390)
T ss_pred hhhhccccCCCCCCCCc
Confidence 33555555555666666
No 17
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.71 E-value=65 Score=21.92 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=8.2
Q ss_pred cchhhhhhhhhc
Q 039654 69 PCVETIVDRYLT 80 (225)
Q Consensus 69 psv~~Vi~Ry~~ 80 (225)
|.++..|.+|..
T Consensus 1 ~~~Q~~i~~f~~ 12 (107)
T 1fxk_A 1 QNVQHQLAQFQQ 12 (107)
T ss_dssp CCHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 566777777764
No 18
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=33.56 E-value=8.4 Score=31.70 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=23.7
Q ss_pred HHhhhccCcEEEEEecCCCcccccCCcch
Q 039654 43 ELCTLCGADIAIIVFSPGKKVFSFGHPCV 71 (225)
Q Consensus 43 ELs~LC~aeva~Ivfsp~gk~~~f~~psv 71 (225)
+|.-.||++|+|||+.+.|++|-.|.+.|
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~~v 166 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVVGF 166 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCccc
Confidence 45577899999999999999887776644
No 19
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=32.96 E-value=57 Score=17.13 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039654 148 PQLEQLKMSLEELKKNVG 165 (225)
Q Consensus 148 eEL~~L~~~Le~l~~~V~ 165 (225)
.||.+++..++.++..+.
T Consensus 6 kELtQIK~kvDsLLe~Le 23 (28)
T 1txp_A 6 KELTQIKQKVDSLLENLE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777777777776654
No 20
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=32.21 E-value=21 Score=24.90 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=20.6
Q ss_pred ccCcEEEEEecCCCcccccCCc-chhhhhhhhhc
Q 039654 48 CGADIAIIVFSPGKKVFSFGHP-CVETIVDRYLT 80 (225)
Q Consensus 48 C~aeva~Ivfsp~gk~~~f~~p-sv~~Vi~Ry~~ 80 (225)
|+-.-.|+|+ |+|..|..-.| ++++||+.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 4444445566 88866655454 58899999753
No 21
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=30.92 E-value=83 Score=18.75 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=18.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHH
Q 039654 139 EAPIEELNLPQLEQLKMSLEELKKN 163 (225)
Q Consensus 139 ~~~l~~Ls~eEL~~L~~~Le~l~~~ 163 (225)
++.-++||-+||+.-+.+|..+...
T Consensus 4 ~~n~~gls~eqlehrerslqtlrdi 28 (55)
T 3sl9_C 4 GENPDGLSQEQLEHRERSLQTLRDI 28 (55)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHH
Confidence 5678899999999999988876543
No 22
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=28.67 E-value=52 Score=27.76 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=51.0
Q ss_pred cEEEEEecCCCcccccCCcchhhhhhhhhcCCCCCCCcchhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039654 51 DIAIIVFSPGKKVFSFGHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELNQMRK 130 (225)
Q Consensus 51 eva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~~~~~~~~~~~~~~E~~~~~~i~~l~~ql~~l~~~le~ekk~~e~L~~l~k 130 (225)
.|+.|||.|-|-..+|.++- .+++-|.-...-..-+..+..-.....+|.+-+....+....|+.++ +.+..+.+
T Consensus 196 a~~~iv~gpfga~i~~~~a~--~f~e~~~i~s~k~~ikaI~~FF~~L~~kI~eA~~~~D~v~~~L~~e~---~~i~~~~~ 270 (318)
T 1qoy_A 196 AAAGVVVGPFGLIISYSIAA--GVVEGKLIPELKNKLKSVQNFFTTLSNTVKQANKDIDAAKLKLTTEI---AAIGEIKT 270 (318)
T ss_dssp TTTTEEECGGGCEEEHHHHT--TSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred chhhhhhccHHHHHhcccch--hHHhhccccCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHhccccc
Confidence 56679999999888874331 22333321000000000000011233455555555555555555444 33444444
Q ss_pred HHHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 039654 131 ASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGK 166 (225)
Q Consensus 131 ~~~~~~~w~~~l~~Ls~eEL~~L~~~Le~l~~~V~~ 166 (225)
..++..+ .-+-+.+-+.+|..++.++-..+.+
T Consensus 271 ~~~~~~~----~~~~d~~l~~~l~~~~~~l~~~C~e 302 (318)
T 1qoy_A 271 ETETTRF----YVDYDDLMLSLLKEAAKKMINTCNE 302 (318)
T ss_dssp HHHTCCC----CSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcee----eeeCCHHHHHHhHHHHHHHHHHHHH
Confidence 4333211 1344666667777777777666544
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.40 E-value=2.9e+02 Score=27.32 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039654 149 QLEQLKMSLEELKKNVGKQAEKM 171 (225)
Q Consensus 149 EL~~L~~~Le~l~~~V~~r~~~L 171 (225)
+|++....|++.+..+++++++|
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 24
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=28.27 E-value=1.3e+02 Score=19.88 Aligned_cols=63 Identities=14% Similarity=0.282 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 039654 99 ASVRELNMQLTQVLNQLEIEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEK 170 (225)
Q Consensus 99 ~~i~~l~~ql~~l~~~le~ekk~~e~L~~l~k~~~~~~~w~~~l~~Ls~eEL~~L~~~Le~l~~~V~~r~~~ 170 (225)
+.+.+|+..+.....+|..-..+ +.... .-.+.+.|+++..-+..-...+..+..++.+-+.+
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QK------LkdA~---~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrq 67 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQK------LKDAE---RAVELDPDDVNKSTLQSRRAAVSALETKLGELKRE 67 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776666443222 11111 11345677777666666666555555555544433
No 25
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=28.01 E-value=71 Score=16.74 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 039654 150 LEQLKMSLEELKKNVGKQAEKML 172 (225)
Q Consensus 150 L~~L~~~Le~l~~~V~~r~~~L~ 172 (225)
|..|...+.+.+++|.++++-|+
T Consensus 6 lrkfrnkikeklkkigqkiqgll 28 (32)
T 1lyp_A 6 LRKFRNKIKEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55667777777788887777664
No 26
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.70 E-value=1.7e+02 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039654 100 SVRELNMQLTQVLNQLEIEKKRGEELN 126 (225)
Q Consensus 100 ~i~~l~~ql~~l~~~le~ekk~~e~L~ 126 (225)
.+.+++.++..+..+++..+.....|.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLE 65 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455667777777776666655555443
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.55 E-value=1.7e+02 Score=20.88 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039654 99 ASVRELNMQLTQVLNQLEIEKKRGEELNQ 127 (225)
Q Consensus 99 ~~i~~l~~ql~~l~~~le~ekk~~e~L~~ 127 (225)
..+.+++.++..+..+++..+.....|..
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~ 64 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQN 64 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45677777888887777776666655543
No 28
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.43 E-value=1.7e+02 Score=20.66 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039654 98 NASVRELNMQLTQVLNQLEIEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKM 171 (225)
Q Consensus 98 ~~~i~~l~~ql~~l~~~le~ekk~~e~L~~l~k~~~~~~~w~~~l~~Ls~eEL~~L~~~Le~l~~~V~~r~~~L 171 (225)
...+.+|+..+.....+|..-..+ ++... .-.+.+.|+++..-|..-...+..+..++.+-+.+|
T Consensus 21 ~~~ieeLq~Ei~~~E~QL~~ArQK------LkdA~---~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqL 85 (113)
T 4fi5_A 21 SMTMEELQREINAHEGQLVIARQK------VRDAE---KQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQL 85 (113)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777887887777766543222 11111 112456677766666665555555555554444443
No 29
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=26.15 E-value=36 Score=25.96 Aligned_cols=21 Identities=24% Similarity=0.619 Sum_probs=17.1
Q ss_pred hhhccCcEEEEEecCCCcccc
Q 039654 45 CTLCGADIAIIVFSPGKKVFS 65 (225)
Q Consensus 45 s~LC~aeva~Ivfsp~gk~~~ 65 (225)
+.-|++.|-+++|||+.+.|-
T Consensus 116 ~~~ceiKvLiLlYs~~k~afl 136 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFM 136 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEE
T ss_pred CCCcceEEEEEEEcCCcceee
Confidence 345999999999999888763
No 30
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=26.03 E-value=17 Score=27.98 Aligned_cols=10 Identities=50% Similarity=1.394 Sum_probs=8.5
Q ss_pred CCCCCCCCCC
Q 039654 216 YNPGFGHGFY 225 (225)
Q Consensus 216 ~~~~~~~~~~ 225 (225)
+=+|||+|||
T Consensus 131 ~RLG~GgGyY 140 (187)
T 1ydm_A 131 FRVGFGGGYY 140 (187)
T ss_dssp CEECCSCCST
T ss_pred CcccCCccHH
Confidence 3499999998
No 31
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=25.76 E-value=1.3e+02 Score=19.01 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039654 99 ASVRELNMQLTQVLNQLEIEKKRGEEL 125 (225)
Q Consensus 99 ~~i~~l~~ql~~l~~~le~ekk~~e~L 125 (225)
.++.....++++...+|+.||++.+.|
T Consensus 24 ~~lE~~~~~Lee~t~~L~~EK~ktd~L 50 (66)
T 3hls_A 24 QELEMLTDRLQLTLRALEDEKKKTDTL 50 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666666665543
No 32
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=25.31 E-value=11 Score=19.23 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=7.8
Q ss_pred Cccchhhhccc
Q 039654 24 SNLQVTFSKRR 34 (225)
Q Consensus 24 ~~R~vTFsKRr 34 (225)
+.|++.|.||+
T Consensus 15 sKRRlvf~~rk 25 (26)
T 2zvv_Y 15 SKRRLIFSXXX 25 (26)
T ss_pred hhceEEEEecc
Confidence 56777777776
No 33
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=24.86 E-value=1.5e+02 Score=19.42 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=12.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 039654 141 PIEELNLPQLEQLKMSLEELK 161 (225)
Q Consensus 141 ~l~~Ls~eEL~~L~~~Le~l~ 161 (225)
....++-+||.++.-.++..+
T Consensus 10 ~y~~ltreELi~l~lk~~~~l 30 (75)
T 3tso_C 10 GYRSLTYEEVLQELVKHKELL 30 (75)
T ss_dssp --CCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHH
Confidence 456777888877766666333
No 34
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=24.45 E-value=1.8e+02 Score=20.05 Aligned_cols=59 Identities=15% Similarity=0.303 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 039654 99 ASVRELNMQLTQVLNQLEIEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGK 166 (225)
Q Consensus 99 ~~i~~l~~ql~~l~~~le~ekk~~e~L~~l~k~~~~~~~w~~~l~~Ls~eEL~~L~~~Le~l~~~V~~ 166 (225)
+.+.+|+..+.....+|..-..+ +..+. .-.+.+.++++..-|..-...+..+..++.+
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QK------LkdA~---~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~e 63 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQK------LKDAE---RAVELDPDDVNKSTLQSRRAAVSALETKLGE 63 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776666443222 11111 1124466666665555555544444444443
No 35
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=24.44 E-value=3.1e+02 Score=27.47 Aligned_cols=42 Identities=17% Similarity=0.418 Sum_probs=26.5
Q ss_pred chHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhc
Q 039654 35 TGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLT 80 (225)
Q Consensus 35 ~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~ 80 (225)
.+|+|+- .|.+-.++- -+++|.+.|++..| -++++||+.|..
T Consensus 958 ~~L~k~t-~L~~s~~~~-Nm~~~d~~g~i~k~--~~l~eiL~~f~~ 999 (1177)
T 4gfh_A 958 IGFYERF-KLISPISLM-NMVAFDPHGKIKKY--NSVNEILSEFYY 999 (1177)
T ss_dssp HCHHHHT-TCEEEECCS-CCEEECTTSCEEEC--SSHHHHHHHHHH
T ss_pred HhHHHhc-cCcceecce-EEEEEcCCCCccCc--CCHHHHHHHHHH
Confidence 3455443 344444432 57888888876655 358889988864
No 36
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.39 E-value=1.4e+02 Score=20.47 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039654 145 LNLPQLEQLKMSLEELKKNVGKQAEKMLI 173 (225)
Q Consensus 145 Ls~eEL~~L~~~Le~l~~~V~~r~~~L~~ 173 (225)
++++||+.|...|+.-...+......|..
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~ 34 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSN 34 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998888888887777643
No 37
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=23.65 E-value=2.2e+02 Score=23.69 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=20.6
Q ss_pred chhhhhhhhhcC--CCCCCCcchhhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 039654 70 CVETIVDRYLTR--NPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEI 117 (225)
Q Consensus 70 sv~~Vi~Ry~~~--~~~~~~~~~~~~E~~~~~~i~~l~~ql~~l~~~le~ 117 (225)
.|+.|++.|.-. +.|...+. ......+.+++.++..+..+++.
T Consensus 200 ~v~~il~s~~f~~~~~p~~~~~-----~~p~~~l~~l~~~i~~l~~~l~~ 244 (357)
T 3rrk_A 200 AARSSLSRLGLAELRFPGAYGA-----MPLGKAAARMKERARLAPEELVG 244 (357)
T ss_dssp HHHHHHHTTTCCBCCCCGGGGG-----SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeccCCcccCC-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776432 22211110 02334455666666666555544
No 38
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.14 E-value=32 Score=22.88 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=26.5
Q ss_pred HHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhcC
Q 039654 38 FKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTR 81 (225)
Q Consensus 38 ~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~~ 81 (225)
.|+|.|.+.+++=+.|++.|.. +-.-|+||...
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-----------~~~qI~k~l~~ 48 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-----------VLDQMNKYLYS 48 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-----------HHHHHHHHHHT
T ss_pred HHHHHHHHHhcChHHHHHHHHH-----------HHHHHHHHHHh
Confidence 5899999999988888877753 56778888764
No 39
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.08 E-value=83 Score=21.67 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=7.5
Q ss_pred hhhhcccchHHHHHHHH
Q 039654 28 VTFSKRRTGLFKKASEL 44 (225)
Q Consensus 28 vTFsKRr~GL~KKA~EL 44 (225)
..+..+..-|-+...+|
T Consensus 27 ~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 27 GELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444444
No 40
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.94 E-value=1.6e+02 Score=20.98 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039654 149 QLEQLKMSLEELKKNVGKQ 167 (225)
Q Consensus 149 EL~~L~~~Le~l~~~V~~r 167 (225)
+|+.....+|.+++.....
T Consensus 86 ~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 86 KLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchhh
Confidence 5666666777666665533
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.86 E-value=74 Score=28.86 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=5.7
Q ss_pred hhhhhhhhh
Q 039654 71 VETIVDRYL 79 (225)
Q Consensus 71 v~~Vi~Ry~ 79 (225)
++..|++..
T Consensus 51 LQglLdkqE 59 (562)
T 3ghg_A 51 MKGLIDEVN 59 (562)
T ss_dssp HHHHHHHHH
T ss_pred hhhhHHhhc
Confidence 667776653
No 42
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=22.19 E-value=2.5e+02 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039654 147 LPQLEQLKMSLEELKKNVGKQAEKMLI 173 (225)
Q Consensus 147 ~eEL~~L~~~Le~l~~~V~~r~~~L~~ 173 (225)
-.+|..+...+..+-+.|+.++..|-.
T Consensus 80 k~~le~l~~~i~~~a~~ik~~Lk~l~~ 106 (180)
T 1s94_A 80 KEELEELMTDIKRTANKVRGKLKTIEL 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777653
No 43
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=22.17 E-value=1.6e+02 Score=22.09 Aligned_cols=13 Identities=15% Similarity=0.649 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHH
Q 039654 140 APIEELNLPQLEQ 152 (225)
Q Consensus 140 ~~l~~Ls~eEL~~ 152 (225)
.|++.|+++|+..
T Consensus 125 ~P~~~mT~dd~~~ 137 (160)
T 2cly_B 125 IPFDQMTIEDLNE 137 (160)
T ss_dssp -------------
T ss_pred CChHhCCHHHHHH
Confidence 4888999888754
No 44
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=22.07 E-value=2.3e+02 Score=20.62 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q 039654 140 APIEELNLPQLEQLKMSLEE 159 (225)
Q Consensus 140 ~~l~~Ls~eEL~~L~~~Le~ 159 (225)
-+|++||.++|+++-..|-+
T Consensus 53 L~id~ls~~~L~e~~keLh~ 72 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHA 72 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 35899999999988776643
No 45
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=22.05 E-value=15 Score=26.01 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=36.3
Q ss_pred eeeEee-CCCCccchhhhcccchHHHHHHHHhhhccCcEEEEEecCCCcccccCCcchhhhhhhhhcC
Q 039654 15 VEMVKM-PNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSFGHPCVETIVDRYLTR 81 (225)
Q Consensus 15 i~i~~I-~n~~~R~vTFsKRr~GL~KKA~ELs~LC~aeva~Ivfsp~gk~~~f~~psv~~Vi~Ry~~~ 81 (225)
|++|.+ ++.++-.++|.||-.|+-+ +=....|..--||.--.+.++..|.+.
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~GiRq---------------fEi~n~G~fRI~gYk~se~~~~~f~sl 75 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGIRN---------------FEINNNGNMRIFGYKMMEHHIQKFTDI 75 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTEEE---------------EEECTTSEEEEEEESCCHHHHHHHHTT
T ss_pred ceeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEecCCHHHHHHHHhc
Confidence 666665 6888999999999999732 222345666666666667777777764
No 46
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=21.64 E-value=2.8e+02 Score=21.33 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 039654 140 APIEELNLPQLEQLKMSLE 158 (225)
Q Consensus 140 ~~l~~Ls~eEL~~L~~~Le 158 (225)
-+|++|+.++|+++-..|-
T Consensus 53 Lnid~Lse~~L~e~ckELh 71 (180)
T 1j1e_C 53 LELAGLGFAELQDLARQLH 71 (180)
T ss_dssp CCGGGCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 3688999999998877653
No 47
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.52 E-value=1.4e+02 Score=17.92 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039654 98 NASVRELNMQLTQVLNQLEIEKKRGEEL 125 (225)
Q Consensus 98 ~~~i~~l~~ql~~l~~~le~ekk~~e~L 125 (225)
...|..|+..+.++..+|..+|.+...+
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKek~~~i 38 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKLKYKAI 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3467888888888888887776655444
No 48
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.92 E-value=1.8e+02 Score=18.98 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.2
Q ss_pred HHHHHH
Q 039654 101 VRELNM 106 (225)
Q Consensus 101 i~~l~~ 106 (225)
+.+|..
T Consensus 16 i~~LE~ 21 (78)
T 3efg_A 16 LVELET 21 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 49
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=20.56 E-value=1.6e+02 Score=20.29 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=25.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 039654 140 APIEELNLPQLEQLKMSLEELKKNVGKQAEK 170 (225)
Q Consensus 140 ~~l~~Ls~eEL~~L~~~Le~l~~~V~~r~~~ 170 (225)
.-++.++.+|+..|...|+.+...+.....+
T Consensus 110 ~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~~ 140 (144)
T 1lj9_A 110 VALQGLSEVEISQLADYLVRMRKNVSEDWEF 140 (144)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3467899999999999999988888776554
No 50
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=20.29 E-value=30 Score=17.89 Aligned_cols=9 Identities=33% Similarity=0.848 Sum_probs=6.8
Q ss_pred HHHHhhhcc
Q 039654 41 ASELCTLCG 49 (225)
Q Consensus 41 A~ELs~LC~ 49 (225)
.+||++||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 479999995
No 51
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=20.16 E-value=79 Score=18.09 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q 039654 140 APIEELNLPQLEQLKMSLEEL 160 (225)
Q Consensus 140 ~~l~~Ls~eEL~~L~~~Le~l 160 (225)
+.|.+|++-|+.+|...||+.
T Consensus 8 e~i~~lTvlE~~eLvk~leek 28 (40)
T 1dd4_C 8 EAIEKLTVSELAELVKKLEDK 28 (40)
T ss_dssp HHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHH
Confidence 356789999999999998864
Done!