BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039656
(660 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 17/148 (11%)
Query: 236 QIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGC-KASVLPRVLS---------GLS 285
Q + G + L + + + LP+SIA LN+L +LS C + + LP L+ GL
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 286 SLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLR 345
+L+ + L + +P I +L +L+ + + L +I L +L L+L GC LR
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 346 SLPEL-----PIRLICLDARNCERLRTL 368
+ P + P++ + L ++C L TL
Sbjct: 244 NYPPIFGGRAPLKRLIL--KDCSNLLTL 269
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIK-I 300
+ L ++ + I LP+SIA+L L+ L S L + L L+ ++LR C ++
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Query: 301 PQDIGSLSSLEWFVLSG-NNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL 350
P G + L+ +L +N LP I +L++L L+L GC L LP L
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 284 LSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNM 343
LS L+ + L ++P + LE L+ N LPASI L+RL L++ C
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162
Query: 344 LRSLPE 349
L LPE
Sbjct: 163 LTELPE 168
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 161 GTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF- 219
G S +L L+F +R+G S D G L+YL + T+ SNF
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG----TTSLKYLDLSFNGVITMSSNFL 393
Query: 220 DPENLIALNLPYSKVEQIWKGEKYL---NVDGSAISHLPSSIA------DLNKLEDLSFF 270
E L L+ +S ++Q+ + +L N+ ISH + +A L+ LE L
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 271 G--CKASVLPRVLSGLSSLKWMELRDCDLIKI-PQDIGSLSSLEWFVLSGNNF 320
G + + LP + + L +L +++L C L ++ P SLSSL+ +S NNF
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPR--VLSGLSSLKWMELRDCDL-I 298
KYL++ + + + S+ L +LE L F + V L +L ++++ +
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 299 KIPQDIGSLSSLEWFVLSGNNFEH--LPASIKKLSRLTYLNLSGCNM 343
LSSLE ++GN+F+ LP +L LT+L+LS C +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 261 LNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNF 320
+N+ +L S LP L + +E+ LI +P+ SL L+ +
Sbjct: 58 INQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPASLEYLDACDNRLSTL 115
Query: 321 EHLPASIKKL--------------SRLTYLNLSGCNMLRSLPELPIRLICLDARNCERLR 366
LPAS+K L + L Y+N + N L LPELP L L RN +L
Sbjct: 116 PELPASLKHLDVDNNQLTXLPELPALLEYIN-ADNNQLTXLPELPTSLEVLSVRN-NQLT 173
Query: 367 TLQELPSCPEELDAS--ILESL-----SKHSRESTQPRIYF 400
L ELP E LD S +LESL H E T+ I+F
Sbjct: 174 FLPELPESLEALDVSTNLLESLPAVPVRNHHSEETE--IFF 212
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 202 LRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWKGEKYL---NVDGSAISHLPSS 257
L+YL + T+ SNF E L L+ +S ++Q+ + +L N+ ISH +
Sbjct: 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139
Query: 258 IA------DLNKLEDLSFFG--CKASVLPRVLSGLSSLKWMELRDCDLIKI-PQDIGSLS 308
+A L+ LE L G + + LP + + L +L +++L C L ++ P SLS
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 309 SLEWFVLSGNNF 320
SL+ +S NNF
Sbjct: 200 SLQVLNMSHNNF 211
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPR--VLSGLSSLKWMELRDCDL-I 298
KYL++ + + + S+ L +LE L F + V L +L ++++ +
Sbjct: 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140
Query: 299 KIPQDIGSLSSLEWFVLSGNNFEH--LPASIKKLSRLTYLNLSGCNM 343
LSSLE ++GN+F+ LP +L LT+L+LS C +
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 161 GTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF- 219
G S +L L+F +R+G S D G L+YL + T+ SNF
Sbjct: 362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG----TISLKYLDLSFNGVITMSSNFL 417
Query: 220 DPENLIALNLPYSKVEQIWKGEKYL---NVDGSAISHLPSSIA------DLNKLEDLSFF 270
E L L+ +S ++Q+ + +L N+ ISH + +A L+ LE L
Sbjct: 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 477
Query: 271 G--CKASVLPRVLSGLSSLKWMELRDCDLIKI-PQDIGSLSSLEWFVLSGNNF 320
G + + LP + + L +L +++L C L ++ P SLSSL+ +S NNF
Sbjct: 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPR--VLSGLSSLKWMELRDCDL-I 298
KYL++ + + + S+ L +LE L F + V L +L ++++ +
Sbjct: 400 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459
Query: 299 KIPQDIGSLSSLEWFVLSGNNFEH--LPASIKKLSRLTYLNLSGCNM 343
LSSLE ++GN+F+ LP +L LT+L+LS C +
Sbjct: 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 244 LNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQD 303
L ++G++++ LP+ I +L+ L L + + LP L LK+ D + +P +
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE 311
Query: 304 IGSLSSLEWFVLSGNNFE 321
G+L +L++ + GN E
Sbjct: 312 FGNLCNLQFLGVEGNPLE 329
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 290 MELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLP 348
++L + + I +I L L+GN+ LPA IK LS L L+LS N L SLP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLP 286
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 289 WMELRDCDLIKIPQDI-GSLSSLEWFVLSGNNFEHLPASI-KKLSRLTYLNLSGCNMLRS 346
+++L L +P + L+SL L GN + LP + KL+ LTYLNLS N L+S
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TNQLQS 90
Query: 347 LP 348
LP
Sbjct: 91 LP 92
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 14/90 (15%)
Query: 262 NKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDI-GSLSSLEWFVLSGNNF 320
NKL D+S L L++L ++ L L +P + L++L+ VL N
Sbjct: 73 NKLHDIS-----------ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 321 EHLPASI-KKLSRLTYLNLSGCNMLRSLPE 349
+ LP + KL+ LTYLNL+ N L+SLP+
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAH-NQLQSLPK 150
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 298 IKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLP 348
IK Q I L ++ + L GN + A +K+L+ LTYL L+G N L+SLP
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTG-NQLQSLP 101
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 232 SKVEQIW-KGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKASVLPRVLSGLSSLKW 289
SK++++W + ++ A + +PS DL +L+ LS+ A GLS+L++
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA------FEGLSNLRY 189
Query: 290 MELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYL 336
+ L C+L +IP ++ L L+ LSGN+ + P S + L L L
Sbjct: 190 LNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 26/108 (24%)
Query: 256 SSIADLNKLEDLSFFGCKASVLPR-VLSGLSSLKWMELRDCDLIKIPQ------------ 302
+ +A+LN LE F + + +P LS LK + LR+ + IP
Sbjct: 109 NGLANLNTLE---LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165
Query: 303 DIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL 350
D+G L L + +S FE LS L YLNL+ CN LR +P L
Sbjct: 166 DLGELKRLSY--ISEGAFE-------GLSNLRYLNLAMCN-LREIPNL 203
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 10/130 (7%)
Query: 118 PSKRSRLWHHEDVYNVLKRNKGTIAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMP 177
PS R +++Y R + +G + + I IHLAC L +
Sbjct: 186 PSYRLYTSDGQEIYGDPLRKAAELIDKGYIVAIKGIGGIHLACDAANEEVVAELRRRTFR 245
Query: 178 NRDGFSIMSSKVHLDQGLEYL-PEELRYLHWYGYPLRT--------LPSNFDPE-NLIAL 227
+ F+I + + + Y+ PEE L Y P+ T LP N P + I +
Sbjct: 246 PQKPFAIXAKDIETVKSFAYVSPEEEEELTSYRRPIITLRKKEPFPLPENLAPGLHTIGV 305
Query: 228 NLPYSKVEQI 237
LPY+ I
Sbjct: 306 XLPYAGTHYI 315
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPR--VLSGLSSLKWMELRDCDL-I 298
KYL++ + + + S+ L +LE L F + V L +L ++++ +
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 299 KIPQDIGSLSSLEWFVLSGNNFEH--LPASIKKLSRLTYLNLSGCNM 343
LSSLE ++GN+F+ LP +L LT+L+LS C +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 254 LPSSIADLNKLEDLSFF-GCKASVLPRVLSGLSSLKWMELRDCDLI-KIPQDIGSLSSLE 311
+PSS+ L+KL DL + +P+ L + +L+ + L DL +IP + + ++L
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 312 WFVLSGNNFE-HLPASIKKLSRLTYLNLSGCNMLRSLP 348
W LS N +P I +L L L LS + ++P
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 298 IKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLP 348
IK Q I L ++ + L GN + A +K+L+ LTYL L+G N L+SLP
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTG-NQLQSLP 101
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 254 LPSSIADLNKLEDLSFF-GCKASVLPRVLSGLSSLKWMELRDCDLI-KIPQDIGSLSSLE 311
+PSS+ L+KL DL + +P+ L + +L+ + L DL +IP + + ++L
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 312 WFVLSGNNFE-HLPASIKKLSRLTYLNLSGCNMLRSLP 348
W LS N +P I +L L L LS + ++P
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIP 301
K ++VD +++ LP LE ++ + LP L L L + + L K+P
Sbjct: 156 KIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLP 211
Query: 302 QDIGSLSSLEWFVLSGNN-FEHLPASIKKLSRLTYLNLSGCNMLRSLPELPIRLICLDAR 360
SL S +++GNN E LP ++ L LT + + N+L++LP+LP L L+ R
Sbjct: 212 DLPLSLES----IVAGNNILEELP-ELQNLPFLTTI-YADNNLLKTLPDLPPSLEALNVR 265
Query: 361 NCERLRTLQELPSCPEEL 378
+ L +LP P+ L
Sbjct: 266 D----NYLTDLPELPQSL 279
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 180 DGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWK 239
D FS + LD GL + +EL W G EN+ + L Y+K Q+ +
Sbjct: 404 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-----------ENIFEIYLSYNKYLQLTR 452
Query: 240 GE-------KYLNVDGSAISHLPSSIADLNKLEDLSFFGCK----ASVLPRVLSGLSSLK 288
+ L + A+ ++ SS + L +L+ A++ +L GL L+
Sbjct: 453 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 512
Query: 289 WMELRDCDLIKIPQD---------IGSLSSLEWFVLSGNNFEHLPASI-KKLSRLTYLNL 338
++L+ +L ++ + + LS L L N F+ +P + K L L ++L
Sbjct: 513 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 572
Query: 339 SGCNMLRSLP 348
G N L +LP
Sbjct: 573 -GLNNLNTLP 581
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 180 DGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWK 239
D FS + LD GL + +EL W G EN+ + L Y+K Q+ +
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-----------ENIFEIYLSYNKYLQLTR 447
Query: 240 GE-------KYLNVDGSAISHLPSSIADLNKLEDLSFFGCK----ASVLPRVLSGLSSLK 288
+ L + A+ ++ SS + L +L+ A++ +L GL L+
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507
Query: 289 WMELRDCDLIKIPQD---------IGSLSSLEWFVLSGNNFEHLPASI-KKLSRLTYLNL 338
++L+ +L ++ + + LS L L N F+ +P + K L L ++L
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567
Query: 339 SGCNMLRSLP 348
G N L +LP
Sbjct: 568 -GLNNLNTLP 576
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 180 DGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWK 239
D FS + LD GL + +EL W G EN+ + L Y+K Q+ +
Sbjct: 409 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-----------ENIFEIYLSYNKYLQLTR 457
Query: 240 GE-------KYLNVDGSAISHLPSSIADLNKLEDLSFFGCK----ASVLPRVLSGLSSLK 288
+ L + A+ ++ SS + L +L+ A++ +L GL L+
Sbjct: 458 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 517
Query: 289 WMELRDCDLIKIPQD---------IGSLSSLEWFVLSGNNFEHLPASI-KKLSRLTYLNL 338
++L+ +L ++ + + LS L L N F+ +P + K L L ++L
Sbjct: 518 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 577
Query: 339 SGCNMLRSLP 348
G N L +LP
Sbjct: 578 -GLNNLNTLP 586
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 310 LEWFVLSGNNFEHLPASIKKLSR-----LTYLNLSGCNMLRSLPELPIRLICLDARNCER 364
+EW SGN + AS+K++S+ + +++ G ++++PEL R + + + E
Sbjct: 69 IEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVED 128
Query: 365 LRTLQELPSCPEELDASILESLSKHSRE 392
L+ + L E + SI + LS E
Sbjct: 129 LK--KRLEGRGTETEESINKRLSAAQAE 154
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 310 LEWFVLSGNNFEHLPASIKKLSR-----LTYLNLSGCNMLRSLPELPIRLICLDARNCER 364
+EW SGN + AS+K++S+ + +++ G ++++PEL R + + + E
Sbjct: 68 IEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVED 127
Query: 365 LRTLQELPSCPEELDASILESLSKHSRE 392
L+ + L E + SI + LS E
Sbjct: 128 LK--KRLEGRGTETEESINKRLSAAQAE 153
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 285 SSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNM 343
S L+ ++L L ++P + LS+L+ VLS N FE+L S LT+L++ G
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG--- 334
Query: 344 LRSLPELPIRLICLDARNCERLRTL 368
+ L + CL+ N E LR L
Sbjct: 335 --NTKRLELGTGCLE--NLENLREL 355
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 310 LEWFVLSGNNFEHLPASIKKLSR-----LTYLNLSGCNMLRSLPELPIRLICLDARNCER 364
+EW SGN + AS+K++S+ + +++ G ++++PEL R + + + E
Sbjct: 84 IEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVED 143
Query: 365 LRTLQELPSCPEELDASILESLSKHSRE 392
L+ + L E + SI + LS E
Sbjct: 144 LK--KRLEGRGTETEESINKRLSAAQAE 169
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 32/137 (23%)
Query: 263 KLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEH 322
+LE+L G A V P V SGLS + L C +++ LS W + +
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLS----VALSGC------KELRCLSGF-WDAVPA----Y 280
Query: 323 LPASIKKLSRLTYLNLS-----GCNMLRSLPELPI--RLICLD----------ARNCERL 365
LPA SRLT LNLS ++++ L + P RL LD A C+ L
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDL 340
Query: 366 RTLQELPSCPEELDASI 382
R L+ PS P ++ ++
Sbjct: 341 RELRVFPSEPFVMEPNV 357
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 36/138 (26%)
Query: 74 YADYGVNFLVDKSLITISCYNKLQ--------------------MHDLLQEMGQE---IV 110
YA G + + L T+ CYN +++LL +G +V
Sbjct: 159 YAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLV 218
Query: 111 RQE-SVRDPSKRSRLWHHEDVYNVLKRNKGTIAIEGIFLDMSKIRDIHLACGTFTSMSNL 169
R+ V DP+ + W N+ +RN G A+ G+ G NL
Sbjct: 219 RKSVEVYDPTTNA--WRQVADMNMCRRNAGVCAVNGLL----------YVVGGDDGSCNL 266
Query: 170 RLLKFYMPNRDGFSIMSS 187
+++Y P D ++++SS
Sbjct: 267 ASVEYYNPTTDKWTVVSS 284
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 255 PSSIADLNKLEDLSFFGCKASVL-PRVLSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEW 312
P++ L +L L C L P + GL++L+++ L+D L +P D L +L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 313 FVLSGNNFEHLP 324
L GN +P
Sbjct: 157 LFLHGNRISSVP 168
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 255 PSSIADLNKLEDLSFFGCKASVL-PRVLSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEW 312
P++ L +L L C L P + GL++L+++ L+D L +P D L +L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 313 FVLSGNNFEHLP 324
L GN +P
Sbjct: 158 LFLHGNRISSVP 169
>pdb|4AIP|A Chain A, The Frpb Iron Transporter From Neisseria Meningitidis
(f3-3 Variant)
pdb|4AIP|B Chain B, The Frpb Iron Transporter From Neisseria Meningitidis
(f3-3 Variant)
pdb|4AIP|C Chain C, The Frpb Iron Transporter From Neisseria Meningitidis
(f3-3 Variant)
Length = 742
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 128 EDVYNVLKRNKGTIAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSS 187
ED + K + T G++++ I DI G FT LR +F + DG ++ SS
Sbjct: 426 EDTVHAYKLSNPTKTDTGVYIEA--IHDI----GDFTLTGGLRYDRFKVKTHDGKTVSSS 479
Query: 188 KVHLDQGLEYLPEELRYLHW 207
++ G+ + P E HW
Sbjct: 480 NLNPSFGVIWQPHE----HW 495
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 255 PSSIADLNKLEDLSFFGCKASVLP-RVLSGLSSLKWMELRDCDLIKIPQDI-GSLSSLEW 312
P L L++L + LP V L+ L ++L L +P + L L+
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116
Query: 313 FVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPE 349
+ N LP I++L+ LT+L L N L+S+P
Sbjct: 117 LFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPH 152
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 255 PSSIADLNKLEDLSFFGCKASVL-PRVLSGLSSLKWMELRDCDLIKIP----QDIGSLSS 309
P++ L L L C L P + GL++L+++ L+D +L +P +D+G+L+
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 310 LEWFVLSGNNFEHLP 324
L L GN +P
Sbjct: 157 L---FLHGNRIPSVP 168
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 251 ISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDI-GSLSS 309
+S +P I K DLSF K + S S L+W++L C++ I L
Sbjct: 23 LSKVPDDIPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81
Query: 310 LEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRSLPELPI-RLICLDARN 361
L +L+GN + P S L+ L L ++ L SL PI +LI L N
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENL-VAVETKLASLESFPIGQLITLKKLN 134
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 251 ISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDI-GSLSS 309
+S +P I K DLSF K + S S L+W++L C++ I L
Sbjct: 18 LSKVPDDIPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 76
Query: 310 LEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRSLPELPI-RLICLDARN 361
L +L+GN + P S L+ L L ++ L SL PI +LI L N
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENL-VAVETKLASLESFPIGQLITLKKLN 129
>pdb|1V0R|A Chain A, Tungstate-Inhibited Phospholipase D From Streptomyces Sp.
Strain Pmf
pdb|1V0S|A Chain A, Uninhibited Form Of Phospholipase D From Streptomyces Sp.
Strain Pmf
pdb|1V0T|A Chain A, Phospholipase D From Streptomyces Sp. Strain Pmf Soaked
With The Product Glycerophosphate
pdb|1V0U|A Chain A, Phospholipase D From Streptomyces Sp. Strain Pmf Soaked
With The Product Glycerophosphate.
pdb|1V0V|A Chain A, Phospholipase D From Streptomyces Sp. Strain Pmf Soaked
With The Substrate Dibutyrylphosphatidylcholine.
pdb|1V0W|A Chain A, Phospholipase D From Streptomyces Sp. Strain Pmf Soaked
With The Substrate Dibutyrylphosphatidylcholine.
pdb|1V0Y|A Chain A, Phospholipase D From Streptomyces Sp. Strain Pmf Soaked
With The Substrate Dibutyrylphosphatidylcholine
Length = 506
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 572 KSNTFTLKFAASSEEECTKPRIEFHDKPSRSGATGNIP 609
KSN ++ FAAS C P + P S ATGN+P
Sbjct: 227 KSNIASVWFAASGNAGCM-PTMHKDTNPKASPATGNVP 263
>pdb|1F0I|A Chain A, The First Crystal Structure Of A Phospholipase D
Length = 504
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 572 KSNTFTLKFAASSEEECTKPRIEFHDKPSRSGATGNIP 609
KSN ++ FAAS C P + P S ATGN+P
Sbjct: 225 KSNIASVWFAASGNAGCM-PTMHKDTNPKASPATGNVP 261
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 279 RVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPA----SIKKLSRLT 334
R SGL+SL+ + L C+L IP + +LS L ++ ++ A S K+L RL
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTE--ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203
Query: 335 YLNLS 339
L +S
Sbjct: 204 VLEIS 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,839,780
Number of Sequences: 62578
Number of extensions: 837766
Number of successful extensions: 2386
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2341
Number of HSP's gapped (non-prelim): 82
length of query: 660
length of database: 14,973,337
effective HSP length: 105
effective length of query: 555
effective length of database: 8,402,647
effective search space: 4663469085
effective search space used: 4663469085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)