Query 039656
Match_columns 660
No_of_seqs 795 out of 4129
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.2E-62 2.7E-67 595.1 42.9 548 1-570 391-1100(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-33 3.4E-38 326.0 3.2 282 1-315 358-675 (889)
3 PLN00113 leucine-rich repeat r 99.8 3.3E-18 7.2E-23 207.0 16.1 237 113-362 39-294 (968)
4 KOG0444 Cytoskeletal regulator 99.7 7.5E-20 1.6E-24 193.7 -1.8 198 163-370 122-380 (1255)
5 PLN00113 leucine-rich repeat r 99.7 4.5E-17 9.8E-22 197.2 10.7 193 161-362 158-366 (968)
6 KOG0444 Cytoskeletal regulator 99.7 2.8E-18 6.1E-23 181.9 -0.4 160 189-349 212-380 (1255)
7 PLN03210 Resistant to P. syrin 99.6 7.7E-15 1.7E-19 179.1 17.1 199 163-370 653-911 (1153)
8 KOG4194 Membrane glycoprotein 99.6 1.6E-16 3.4E-21 168.1 1.6 257 94-361 125-401 (873)
9 KOG0617 Ras suppressor protein 99.6 3.8E-17 8.2E-22 148.4 -5.2 157 164-348 30-189 (264)
10 PRK15370 E3 ubiquitin-protein 99.5 3.3E-14 7.1E-19 163.4 12.4 180 167-369 199-383 (754)
11 KOG0617 Ras suppressor protein 99.5 4.2E-16 9.2E-21 141.6 -3.5 148 158-330 47-195 (264)
12 PRK15370 E3 ubiquitin-protein 99.5 1.7E-14 3.6E-19 165.8 8.1 180 167-369 220-404 (754)
13 KOG4194 Membrane glycoprotein 99.5 1.1E-14 2.3E-19 154.4 5.7 215 147-362 82-327 (873)
14 KOG0472 Leucine-rich repeat pr 99.5 1.4E-15 3.1E-20 154.7 -1.1 107 255-362 428-538 (565)
15 PRK15387 E3 ubiquitin-protein 99.5 1.4E-13 3E-18 157.4 14.7 177 168-370 223-419 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 5.9E-14 1.3E-18 160.5 10.8 182 166-369 241-438 (788)
17 KOG0472 Leucine-rich repeat pr 99.5 5.5E-16 1.2E-20 157.7 -7.2 149 190-340 128-284 (565)
18 KOG0618 Serine/threonine phosp 99.4 1.3E-14 2.8E-19 161.4 -3.3 192 161-364 258-488 (1081)
19 KOG0532 Leucine-rich repeat (L 99.3 6.6E-14 1.4E-18 148.4 -6.4 187 165-363 73-271 (722)
20 KOG0618 Serine/threonine phosp 99.3 1.1E-12 2.4E-17 146.2 1.5 170 197-368 238-467 (1081)
21 KOG4237 Extracellular matrix p 99.2 6E-13 1.3E-17 135.7 -3.1 202 143-354 69-345 (498)
22 KOG3207 Beta-tubulin folding c 99.1 2.7E-11 5.8E-16 125.4 0.7 203 134-344 114-339 (505)
23 cd00116 LRR_RI Leucine-rich re 99.0 4.7E-11 1E-15 125.7 1.6 149 194-343 76-262 (319)
24 COG4886 Leucine-rich repeat (L 99.0 1.2E-10 2.7E-15 126.6 4.4 141 201-341 117-265 (394)
25 KOG0532 Leucine-rich repeat (L 99.0 9.8E-12 2.1E-16 132.2 -4.7 167 165-342 96-271 (722)
26 cd00116 LRR_RI Leucine-rich re 99.0 7.1E-11 1.5E-15 124.3 0.6 197 161-362 17-260 (319)
27 PF14580 LRR_9: Leucine-rich r 98.9 3.8E-10 8.2E-15 107.1 3.3 83 261-344 41-126 (175)
28 KOG1259 Nischarin, modulator o 98.9 2.1E-10 4.5E-15 113.3 1.0 103 238-342 283-385 (490)
29 KOG1259 Nischarin, modulator o 98.9 2.8E-10 6E-15 112.5 0.9 121 222-344 284-412 (490)
30 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.7E-14 103.6 3.9 121 201-339 20-148 (175)
31 COG4886 Leucine-rich repeat (L 98.8 3.2E-09 7E-14 115.5 5.8 177 163-349 112-295 (394)
32 KOG4237 Extracellular matrix p 98.8 1.8E-10 4E-15 117.8 -5.1 195 148-343 96-358 (498)
33 KOG3207 Beta-tubulin folding c 98.8 8.7E-10 1.9E-14 114.4 -1.7 189 139-343 101-313 (505)
34 PLN03150 hypothetical protein; 98.7 3.8E-08 8.2E-13 112.9 7.7 106 263-368 419-531 (623)
35 KOG4658 Apoptotic ATPase [Sign 98.6 2.3E-08 4.9E-13 117.4 4.9 149 164-339 520-676 (889)
36 PF00931 NB-ARC: NB-ARC domain 98.6 1.9E-09 4.1E-14 111.9 -4.2 74 1-74 198-281 (287)
37 PRK15386 type III secretion pr 98.5 2.1E-07 4.6E-12 98.8 8.7 133 195-362 48-187 (426)
38 PRK15386 type III secretion pr 98.5 1.6E-07 3.5E-12 99.6 7.8 153 164-342 49-211 (426)
39 PLN03150 hypothetical protein; 98.5 1.8E-07 3.8E-12 107.4 7.6 109 241-349 420-533 (623)
40 KOG1859 Leucine-rich repeat pr 98.4 4.1E-09 8.9E-14 115.2 -7.7 103 238-342 163-265 (1096)
41 PF13855 LRR_8: Leucine rich r 98.3 5.5E-07 1.2E-11 70.1 2.8 57 286-342 2-60 (61)
42 KOG1909 Ran GTPase-activating 98.2 9.4E-08 2E-12 97.1 -2.5 123 221-343 156-310 (382)
43 KOG0531 Protein phosphatase 1, 98.2 2.3E-07 5.1E-12 101.5 0.3 81 201-299 119-200 (414)
44 PF13855 LRR_8: Leucine rich r 98.2 9.7E-07 2.1E-11 68.7 3.0 57 263-319 2-60 (61)
45 KOG0531 Protein phosphatase 1, 98.1 3.4E-07 7.5E-12 100.2 -1.0 147 165-341 70-218 (414)
46 KOG1909 Ran GTPase-activating 98.1 3.1E-07 6.7E-12 93.4 -2.8 126 195-321 88-254 (382)
47 KOG1859 Leucine-rich repeat pr 98.0 1.6E-07 3.5E-12 103.0 -6.3 119 223-343 165-291 (1096)
48 KOG4579 Leucine-rich repeat (L 98.0 2.9E-07 6.3E-12 81.6 -4.2 64 263-326 78-141 (177)
49 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.3E-10 57.3 2.1 36 263-298 2-37 (44)
50 PF12799 LRR_4: Leucine Rich r 97.7 2.4E-05 5.1E-10 56.4 2.8 40 285-324 1-40 (44)
51 KOG4579 Leucine-rich repeat (L 97.7 3E-06 6.5E-11 75.3 -2.7 86 258-343 49-135 (177)
52 KOG1644 U2-associated snRNP A' 97.6 7.1E-05 1.5E-09 71.0 4.5 94 246-340 49-149 (233)
53 KOG2982 Uncharacterized conser 97.6 3.3E-05 7.2E-10 77.1 2.3 66 284-349 198-267 (418)
54 KOG3665 ZYG-1-like serine/thre 97.3 6.8E-05 1.5E-09 86.3 1.0 99 240-339 174-283 (699)
55 KOG2120 SCF ubiquitin ligase, 97.1 3.6E-05 7.8E-10 76.9 -3.2 56 306-363 311-374 (419)
56 KOG3665 ZYG-1-like serine/thre 97.1 6.9E-05 1.5E-09 86.3 -2.1 148 201-364 123-287 (699)
57 KOG2982 Uncharacterized conser 97.1 0.00011 2.3E-09 73.6 -0.6 151 162-321 92-262 (418)
58 KOG1644 U2-associated snRNP A' 97.0 0.00091 2E-08 63.7 5.1 107 196-319 38-151 (233)
59 KOG2739 Leucine-rich acidic nu 96.8 0.00065 1.4E-08 67.2 2.6 104 260-366 41-157 (260)
60 KOG2123 Uncharacterized conser 96.7 0.00023 4.9E-09 70.7 -2.1 86 261-348 18-105 (388)
61 KOG2120 SCF ubiquitin ligase, 96.6 2.9E-05 6.3E-10 77.5 -9.0 168 168-343 186-375 (419)
62 KOG2739 Leucine-rich acidic nu 96.0 0.004 8.7E-08 61.7 2.5 89 277-366 35-130 (260)
63 COG5238 RNA1 Ran GTPase-activa 95.7 0.0031 6.6E-08 62.7 0.1 84 260-343 155-254 (388)
64 KOG2123 Uncharacterized conser 95.3 0.0013 2.9E-08 65.4 -3.6 79 258-337 37-123 (388)
65 COG5238 RNA1 Ran GTPase-activa 95.3 0.0059 1.3E-07 60.7 0.8 180 165-362 28-252 (388)
66 PF00560 LRR_1: Leucine Rich R 94.2 0.016 3.5E-07 34.8 0.5 18 310-327 2-19 (22)
67 PF00560 LRR_1: Leucine Rich R 94.0 0.017 3.7E-07 34.7 0.2 19 287-305 2-20 (22)
68 KOG0473 Leucine-rich repeat pr 93.7 0.0016 3.4E-08 63.3 -7.3 90 257-346 37-126 (326)
69 PF07725 LRR_3: Leucine Rich R 92.1 0.1 2.3E-06 30.4 1.6 20 223-242 1-20 (20)
70 PF13306 LRR_5: Leucine rich r 91.3 1.1 2.3E-05 39.9 8.2 62 158-230 3-66 (129)
71 PF13504 LRR_7: Leucine rich r 91.0 0.14 3.1E-06 28.6 1.4 12 287-298 3-14 (17)
72 PF13504 LRR_7: Leucine rich r 89.5 0.24 5.2E-06 27.7 1.4 16 263-278 2-17 (17)
73 KOG0473 Leucine-rich repeat pr 87.9 0.018 3.9E-07 56.1 -6.3 79 243-321 46-124 (326)
74 PF13306 LRR_5: Leucine rich r 86.9 2 4.3E-05 38.0 6.7 78 258-339 31-111 (129)
75 smart00370 LRR Leucine-rich re 84.4 0.56 1.2E-05 29.2 1.2 19 308-326 2-20 (26)
76 smart00369 LRR_TYP Leucine-ric 84.4 0.56 1.2E-05 29.2 1.2 19 308-326 2-20 (26)
77 smart00370 LRR Leucine-rich re 83.9 0.82 1.8E-05 28.4 1.9 20 284-303 1-20 (26)
78 smart00369 LRR_TYP Leucine-ric 83.9 0.82 1.8E-05 28.4 1.9 20 284-303 1-20 (26)
79 KOG4308 LRR-containing protein 83.7 0.016 3.5E-07 64.2 -10.3 19 162-180 110-128 (478)
80 KOG1947 Leucine rich repeat pr 80.3 0.26 5.6E-06 54.7 -2.6 87 258-344 210-308 (482)
81 KOG4308 LRR-containing protein 78.6 0.064 1.4E-06 59.5 -7.9 94 253-346 163-277 (478)
82 smart00364 LRR_BAC Leucine-ric 72.2 2.3 5.1E-05 26.6 1.3 17 201-217 3-19 (26)
83 KOG3864 Uncharacterized conser 72.2 0.92 2E-05 43.7 -0.8 77 147-230 105-184 (221)
84 KOG1947 Leucine rich repeat pr 71.6 1.3 2.7E-05 49.1 -0.0 106 260-365 186-308 (482)
85 KOG4341 F-box protein containi 66.6 3 6.5E-05 44.6 1.5 87 260-346 344-441 (483)
86 smart00365 LRR_SD22 Leucine-ri 54.1 11 0.00023 23.7 1.8 14 222-235 2-15 (26)
87 KOG3864 Uncharacterized conser 53.1 8.8 0.00019 37.2 2.0 40 327-366 121-165 (221)
88 KOG4341 F-box protein containi 46.7 8.1 0.00018 41.4 0.7 107 260-366 292-415 (483)
89 PF13516 LRR_6: Leucine Rich r 41.7 14 0.0003 22.2 0.9 12 309-320 3-14 (24)
90 smart00367 LRR_CC Leucine-rich 38.7 24 0.00051 21.8 1.7 12 331-342 2-13 (26)
91 KOG3763 mRNA export factor TAP 36.4 17 0.00036 40.5 1.1 14 332-345 271-284 (585)
92 smart00368 LRR_RI Leucine rich 31.7 38 0.00082 21.4 1.8 14 285-298 2-15 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-62 Score=595.11 Aligned_cols=548 Identities=31% Similarity=0.548 Sum_probs=397.3
Q ss_pred CeeeecccccCC-HHHHHHHHHHHhcCCCchhhhhhhccccccch-hhhceeeeeecCCCCCCHHHHHHHhcCCCC-ccc
Q 039656 1 KLEALGQFLTKS-KLDWKNALKNLTRISNPNIYDVLKISYNELKK-EEKSIFLDIACFFKGEDKDYMTMIQDYPDY-ADY 77 (660)
Q Consensus 1 AlkvlG~~L~~k-~~eW~~~l~~l~~~~~~~I~~~LklSYd~Lp~-~lK~cFLy~a~Fp~~~~~~~l~~iw~a~gf-~~~ 77 (660)
||+|+|+.|++| .++|++++++|++.++.+|+++|++|||+|++ .+|.||+||||||++++++++..++.++|+ ++.
T Consensus 391 Al~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~ 470 (1153)
T PLN03210 391 GLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNI 470 (1153)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchh
Confidence 789999999999 99999999999998889999999999999987 489999999999999999999999988888 888
Q ss_pred cchhhhcCCCEEEecCCeEeecHHHHHHHHHHHhhhccCCCCCcccccCchhHHHHhhcCcCCCcEEEEEeecCCCeeee
Q 039656 78 GVNFLVDKSLITISCYNKLQMHDLLQEMGQEIVRQESVRDPSKRSRLWHHEDVYNVLKRNKGTIAIEGIFLDMSKIRDIH 157 (660)
Q Consensus 78 ~i~~Li~rsLi~~~~~~~~~MHDLl~d~~~~i~~~e~~~~p~~~~rL~~~~di~~vl~~~~~~~~v~~i~l~~s~~~~~~ 157 (660)
+++.|++||||++. .++++||||+|+||++++++++ .+|++++|+|+++|+++++..++|++.+++|.++.+.+.++.
T Consensus 471 ~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~ 548 (1153)
T PLN03210 471 GLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELH 548 (1153)
T ss_pred ChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceee
Confidence 99999999999998 7899999999999999999998 789999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccc
Q 039656 158 LACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQI 237 (660)
Q Consensus 158 l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l 237 (660)
+...+|.+|++|++|.++.+.... ......++|.++..+|.+||+|+|.+|+++.+|..+.+.+|+.|+|++|+++.+
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccc
Confidence 999999999999999998775421 112346789999999989999999999999999999999999999999999888
Q ss_pred cC------CCeeecCCCC-CCcccCccccCCCCCcEEEecCCC-CcCCCCCCCCCCCCCEEEccCCC-CCCCCcccCCC-
Q 039656 238 WK------GEKYLNVDGS-AISHLPSSIADLNKLEDLSFFGCK-ASVLPRVLSGLSSLKWMELRDCD-LIKIPQDIGSL- 307 (660)
Q Consensus 238 ~~------~l~~L~l~~~-~l~~lp~si~~L~~L~~L~l~~~~-~~~lp~~l~~L~~L~~L~Ls~~~-l~~lp~~l~~l- 307 (660)
|. +++.|+++++ .++.+|. ++.+++|++|++++|. +..+|..+.++++|+.|++++|. +..+|..+ ++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 75 3466666543 3455553 5555666666666554 44455555555555555554442 22233221 11
Q ss_pred -------------------------------------------------------------------------cccCccc
Q 039656 308 -------------------------------------------------------------------------SSLEWFV 314 (660)
Q Consensus 308 -------------------------------------------------------------------------~~L~~L~ 314 (660)
++|+.|+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred CCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 2445555
Q ss_pred ccccc-ceecchhhhcCCCCCeecccCccCCCCCCCC--CcCCcEEecccCcCCcccCCCCCCCcccc--hh----HH--
Q 039656 315 LSGNN-FEHLPASIKKLSRLTYLNLSGCNMLRSLPEL--PIRLICLDARNCERLRTLQELPSCPEELD--AS----IL-- 383 (660)
Q Consensus 315 L~~n~-l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~L~~l~~~~~~~~~l~--~~----~~-- 383 (660)
|++|. +..+|.+++++++|+.|+|++|+.++.+|.. +++|+.|++++|..|+.++..+..+..|. .. .+
T Consensus 785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence 55443 3367888888999999999999888888865 67888888888888776654432221110 00 00
Q ss_pred ----hhhhcccCC-------------CCCCCeEEe-------------------------------------ecCCcccC
Q 039656 384 ----ESLSKHSRE-------------STQPRIYFN-------------------------------------FTNCLKVN 409 (660)
Q Consensus 384 ----~~l~~~~~~-------------~~~~~~~~~-------------------------------------~~nC~~L~ 409 (660)
..|....+. ....+..+. |.||++|+
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 000000000 001112233 44555554
Q ss_pred hhHHHHHHHHHHHHhhccCCCCcCcceeecCCCCCCCCccccCCCceEE-EeCCCCCCcCcccceEEEEEEeeccCCC-C
Q 039656 410 GNAYNILAEIKLRLFNEKNFDTQRGISICLPGSGIPDWFSNQSSGSSIT-IQLPRHCCNRIFIGFAFSAVIEFQRDSD-A 487 (660)
Q Consensus 410 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pg~~iP~Wf~~q~~g~si~-i~lp~~~~~~~~~gf~~c~v~~~~~~~~-~ 487 (660)
+.+. + + .+ .....+++||.++|+||.||+.|++++ |++|+.|+...|.||++|+|+++..... .
T Consensus 945 ~~a~--l---~-----~~----~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~ 1010 (1153)
T PLN03210 945 QEAL--L---Q-----QQ----SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIIS 1010 (1153)
T ss_pred chhh--h---c-----cc----ccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCC
Confidence 4331 0 0 00 112347899999999999999999998 9999999988899999999998876432 2
Q ss_pred CCceEEEEEEEeecCCceee--EEEeec-cCCCCCeEEEccccCCC----CC-CCCCCCCceEEEEEEEeecCCC-eeee
Q 039656 488 RGEYFHVRCDYTFENKHVDH--CHLVQY-LTIDSDHVILGFQPCCD----IQ-PPDGDHSAAVSFRFLIENKKCH-NEKC 558 (660)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~sdh~~l~~~~~~~----~~-~~~~~~~~~~~f~f~~~~~~~~-~vk~ 558 (660)
....+.|.|.|....|.... +..+.+ .....+|+++ |+.... .. .....+++ |+++|.+.+.... +||+
T Consensus 1011 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~ 1088 (1153)
T PLN03210 1011 VSFDIQVCCRFIDRLGNHFDSPYQPHVFSVTKKGSHLVI-FDCCFPLNEDNAPLAELNYDH-VDIQFRLTNKNSQLKLKG 1088 (1153)
T ss_pred CceeEEEEEEEECCCCCccccCCCceeEeeeccccceEE-ecccccccccccchhccCCce-eeEEEEEecCCCCeEEEe
Confidence 35678888887655443111 000011 0123445554 121100 00 11234566 8888888664444 8999
Q ss_pred eeeEEEecCCCC
Q 039656 559 CGVNPVYANPNM 570 (660)
Q Consensus 559 cGv~lvy~~~~~ 570 (660)
|||+++|+.+.-
T Consensus 1089 cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1089 CGIRLSEDDSSL 1100 (1153)
T ss_pred eeEEEeccCCCc
Confidence 999999987744
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-33 Score=326.03 Aligned_cols=282 Identities=26% Similarity=0.335 Sum_probs=195.0
Q ss_pred CeeeecccccCC--HHHHHHHHHHHhcC-----C--CchhhhhhhccccccchhhhceeeeeecCCCCCC--HHHHHHHh
Q 039656 1 KLEALGQFLTKS--KLDWKNALKNLTRI-----S--NPNIYDVLKISYNELKKEEKSIFLDIACFFKGED--KDYMTMIQ 69 (660)
Q Consensus 1 AlkvlG~~L~~k--~~eW~~~l~~l~~~-----~--~~~I~~~LklSYd~Lp~~lK~cFLy~a~Fp~~~~--~~~l~~iw 69 (660)
|++|||+.|+.| .+||+.+.+.+++. + .+.|+++|++|||.||+++|.||||||+||+||+ +++++..|
T Consensus 358 Al~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yW 437 (889)
T KOG4658|consen 358 ALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYW 437 (889)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHH
Confidence 789999999999 88999999988775 2 3569999999999999999999999999999998 58999999
Q ss_pred cCCCC-------------ccccchhhhcCCCEEEecC----CeEeecHHHHHHHHHHHhhhccCCCCCcccccCch-hHH
Q 039656 70 DYPDY-------------ADYGVNFLVDKSLITISCY----NKLQMHDLLQEMGQEIVRQESVRDPSKRSRLWHHE-DVY 131 (660)
Q Consensus 70 ~a~gf-------------~~~~i~~Li~rsLi~~~~~----~~~~MHDLl~d~~~~i~~~e~~~~p~~~~rL~~~~-di~ 131 (660)
+|||| ++.++.+|+.++|++.... .+|+|||++||||.+++.+....... ...... ...
T Consensus 438 iaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~---~iv~~~~~~~ 514 (889)
T KOG4658|consen 438 IAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN---QIVSDGVGLS 514 (889)
T ss_pred HhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc---eEEECCcCcc
Confidence 99997 3455999999999998742 57999999999999999944322111 000000 000
Q ss_pred HHhhcCcCCCcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCc-cccCCcCceEEEeeCC
Q 039656 132 NVLKRNKGTIAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQG-LEYLPEELRYLHWYGY 210 (660)
Q Consensus 132 ~vl~~~~~~~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~-l~~l~~~Lr~L~l~~~ 210 (660)
+ ..+......++++++.......+.-. .+.++|++|-+..|.. ....++.. +..+| .||+||+++|
T Consensus 515 ~-~~~~~~~~~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~-------~l~~is~~ff~~m~-~LrVLDLs~~ 581 (889)
T KOG4658|consen 515 E-IPQVKSWNSVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSD-------WLLEISGEFFRSLP-LLRVLDLSGN 581 (889)
T ss_pred c-cccccchhheeEEEEeccchhhccCC----CCCCccceEEEeecch-------hhhhcCHHHHhhCc-ceEEEECCCC
Confidence 0 11222335667777666555433221 2334799999887751 01345554 44466 9999999977
Q ss_pred -CCCCCCCCC-CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCc-CCCCCCCCCCCC
Q 039656 211 -PLRTLPSNF-DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKAS-VLPRVLSGLSSL 287 (660)
Q Consensus 211 -~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~-~lp~~l~~L~~L 287 (660)
.+..||+.+ ++-+|++|++++ +.+..+|.++++|++|.+|++..+... .+|.....|++|
T Consensus 582 ~~l~~LP~~I~~Li~LryL~L~~-----------------t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 582 SSLSKLPSSIGELVHLRYLDLSD-----------------TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred CccCcCChHHhhhhhhhcccccC-----------------CCccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 468999888 677776665554 445667777888888888888877743 334444458888
Q ss_pred CEEEccCCCCCC---CCcccCCCcccCcccc
Q 039656 288 KWMELRDCDLIK---IPQDIGSLSSLEWFVL 315 (660)
Q Consensus 288 ~~L~Ls~~~l~~---lp~~l~~l~~L~~L~L 315 (660)
++|.+..-.... .-..+..+.+|+.|..
T Consensus 645 r~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 645 RVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cEEEeeccccccchhhHHhhhcccchhhhee
Confidence 888776554222 2223344444444444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=3.3e-18 Score=206.97 Aligned_cols=237 Identities=25% Similarity=0.376 Sum_probs=148.7
Q ss_pred hccCCCCCcccccCch-hHHHHhhcCc--CCCcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcce
Q 039656 113 ESVRDPSKRSRLWHHE-DVYNVLKRNK--GTIAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKV 189 (660)
Q Consensus 113 e~~~~p~~~~rL~~~~-di~~vl~~~~--~~~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~ 189 (660)
+.+.+|+++.+.|... +.|.+ ...+ ....+..+.+..+.+.. ..+.+|.++++|+.|++++|.+.+
T Consensus 39 ~~~~~~~~~~~~w~~~~~~c~w-~gv~c~~~~~v~~L~L~~~~i~~--~~~~~~~~l~~L~~L~Ls~n~~~~-------- 107 (968)
T PLN00113 39 SSINDPLKYLSNWNSSADVCLW-QGITCNNSSRVVSIDLSGKNISG--KISSAIFRLPYIQTINLSNNQLSG-------- 107 (968)
T ss_pred HhCCCCcccCCCCCCCCCCCcC-cceecCCCCcEEEEEecCCCccc--cCChHHhCCCCCCEEECCCCccCC--------
Confidence 4445677777788654 33322 1111 23456666655444322 235678899999999999888753
Q ss_pred ecCCccc-cCCcCceEEEeeCCCCC-CCCCCCCCCCceEEeCCCCCCccc-------cCCCeeecCCCCCCc-ccCcccc
Q 039656 190 HLDQGLE-YLPEELRYLHWYGYPLR-TLPSNFDPENLIALNLPYSKVEQI-------WKGEKYLNVDGSAIS-HLPSSIA 259 (660)
Q Consensus 190 ~lp~~l~-~l~~~Lr~L~l~~~~l~-~lP~~~~l~~L~~L~L~~n~l~~l-------~~~l~~L~l~~~~l~-~lp~si~ 259 (660)
.+|..+. .+. +||+|++++|.+. .+|. ..+++|++|++++|.+... .+.+++|++++|.+. .+|.+++
T Consensus 108 ~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 108 PIPDDIFTTSS-SLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred cCChHHhccCC-CCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 5666655 444 7778877777764 3443 2466777777777766532 235666777777665 5666677
Q ss_pred CCCCCcEEEecCCCCc-CCCCCCCCCCCCCEEEccCCCCCC-CCcccCCCcccCccccccccce-ecchhhhcCCCCCee
Q 039656 260 DLNKLEDLSFFGCKAS-VLPRVLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSGNNFE-HLPASIKKLSRLTYL 336 (660)
Q Consensus 260 ~L~~L~~L~l~~~~~~-~lp~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L 336 (660)
++++|++|++++|.+. .+|..++++++|+.|+|++|.+.+ +|..++.+++|++|++++|++. .+|..++++++|+.|
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 7777777777777643 456666667777777777776664 6666666667777777666665 566666666666666
Q ss_pred cccCccCCCCCCCC---CcCCcEEecccC
Q 039656 337 NLSGCNMLRSLPEL---PIRLICLDARNC 362 (660)
Q Consensus 337 ~L~~c~~l~~lp~~---~~~L~~L~l~~c 362 (660)
+|++|+..+.+|.. +.+|+.|++++|
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 66666665555543 355566666554
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=7.5e-20 Score=193.74 Aligned_cols=198 Identities=24% Similarity=0.314 Sum_probs=132.0
Q ss_pred ccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCc-----c
Q 039656 163 FTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVE-----Q 236 (660)
Q Consensus 163 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~-----~ 236 (660)
+...+++-+|+|++|++. .+|..++--...|-+|++++|.+..+|+.+ .+.+|++|+|++|.+. +
T Consensus 122 LE~AKn~iVLNLS~N~Ie---------tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIE---------TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred hhhhcCcEEEEcccCccc---------cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence 344455555555555442 444433322224556666666666666555 5566666666665432 1
Q ss_pred c---------------------cC------CCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcC-------------
Q 039656 237 I---------------------WK------GEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASV------------- 276 (660)
Q Consensus 237 l---------------------~~------~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~------------- 276 (660)
+ |+ +++.+++++|++..+|+.+.++++|+.|+|++|++++
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLET 272 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhh
Confidence 1 11 2234448888888888888888888888888877665
Q ss_pred ----------CCCCCCCCCCCCEEEccCCCCC--CCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCC
Q 039656 277 ----------LPRVLSGLSSLKWMELRDCDLI--KIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNML 344 (660)
Q Consensus 277 ----------lp~~l~~L~~L~~L~Ls~~~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l 344 (660)
+|..+++|+.|+.|.+.+|++. ++|.+||.|..|+.+..++|++.-+|+++..+..|+.|.|+.| .+
T Consensus 273 LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N-rL 351 (1255)
T KOG0444|consen 273 LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN-RL 351 (1255)
T ss_pred hccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc-ce
Confidence 5666666666666666666554 3778888888888888888888888888888888888888754 56
Q ss_pred CCCCCC---CcCCcEEecccCcCCcccCC
Q 039656 345 RSLPEL---PIRLICLDARNCERLRTLQE 370 (660)
Q Consensus 345 ~~lp~~---~~~L~~L~l~~c~~L~~l~~ 370 (660)
-.+|+. ++.|+.|++.+.++|..-|.
T Consensus 352 iTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 352 ITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred eechhhhhhcCCcceeeccCCcCccCCCC
Confidence 678865 78899999999998875443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=4.5e-17 Score=197.15 Aligned_cols=193 Identities=24% Similarity=0.334 Sum_probs=106.6
Q ss_pred ccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCC-CCCCCCC-CCCCceEEeCCCCCCccc-
Q 039656 161 GTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPL-RTLPSNF-DPENLIALNLPYSKVEQI- 237 (660)
Q Consensus 161 ~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l-~~lP~~~-~l~~L~~L~L~~n~l~~l- 237 (660)
..|.++++|++|++++|.+. ..+|..+..++ +|++|++++|.+ ..+|..+ .+++|++|++++|++...
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~--------~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLV--------GKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred hHHhcCCCCCEEECccCccc--------ccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 34555555666655555542 13455555555 566666665554 3445544 555666666665555432
Q ss_pred ------cCCCeeecCCCCCCc-ccCccccCCCCCcEEEecCCCCc-CCCCCCCCCCCCCEEEccCCCCCC-CCcccCCCc
Q 039656 238 ------WKGEKYLNVDGSAIS-HLPSSIADLNKLEDLSFFGCKAS-VLPRVLSGLSSLKWMELRDCDLIK-IPQDIGSLS 308 (660)
Q Consensus 238 ------~~~l~~L~l~~~~l~-~lp~si~~L~~L~~L~l~~~~~~-~lp~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~ 308 (660)
.++++.|++++|.+. .+|.+++++++|++|++++|.+. .+|..+.++++|+.|+|++|.+.+ +|..+..++
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 124455556555554 45555566666666666665533 455555556666666666665554 555555666
Q ss_pred ccCccccccccce-ecchhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccC
Q 039656 309 SLEWFVLSGNNFE-HLPASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNC 362 (660)
Q Consensus 309 ~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c 362 (660)
+|+.|++++|.+. .+|..+..+++|+.|+|++|+..+.+|.. .++|+.|+++++
T Consensus 309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 6666666666555 45555566666666666666555555543 345555555544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.68 E-value=2.8e-18 Score=181.95 Aligned_cols=160 Identities=24% Similarity=0.339 Sum_probs=148.7
Q ss_pred eecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccc------cCCCeeecCCCCCCcccCccccCC
Q 039656 189 VHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQI------WKGEKYLNVDGSAISHLPSSIADL 261 (660)
Q Consensus 189 ~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l------~~~l~~L~l~~~~l~~lp~si~~L 261 (660)
..+|.++..+. +|+-++++.|.+..+|+.. ++.+|+.|+|++|+|+++ |.++..|+++.|+++.+|+.+.+|
T Consensus 212 ~N~Ptsld~l~-NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL 290 (1255)
T KOG0444|consen 212 DNIPTSLDDLH-NLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL 290 (1255)
T ss_pred hcCCCchhhhh-hhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhh
Confidence 46777888887 8999999999999999887 899999999999999876 889999999999999999999999
Q ss_pred CCCcEEEecCCCC--cCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeeccc
Q 039656 262 NKLEDLSFFGCKA--SVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLS 339 (660)
Q Consensus 262 ~~L~~L~l~~~~~--~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~ 339 (660)
++|+.|.+.+|++ ..+|+.+++|.+|+.+.+.+|.+.-+|++++.+..|+.|.|++|.+.++|+.|.-|+.|+.|++.
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeecc
Confidence 9999999999994 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCC
Q 039656 340 GCNMLRSLPE 349 (660)
Q Consensus 340 ~c~~l~~lp~ 349 (660)
.|+.+---|.
T Consensus 371 eNpnLVMPPK 380 (1255)
T KOG0444|consen 371 ENPNLVMPPK 380 (1255)
T ss_pred CCcCccCCCC
Confidence 9998865553
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.61 E-value=7.7e-15 Score=179.06 Aligned_cols=199 Identities=26% Similarity=0.385 Sum_probs=131.0
Q ss_pred ccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCC-CCCCCCCCCCCCCceEEeCCCCC-Cccc---
Q 039656 163 FTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGY-PLRTLPSNFDPENLIALNLPYSK-VEQI--- 237 (660)
Q Consensus 163 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~-~l~~lP~~~~l~~L~~L~L~~n~-l~~l--- 237 (660)
++.+++|+.|++.+|.. ...+|..+..++ +|+.|++++| .++.+|..+++++|+.|++++|. +..+
T Consensus 653 ls~l~~Le~L~L~~c~~--------L~~lp~si~~L~-~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 653 LSMATNLETLKLSDCSS--------LVELPSSIQYLN-KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred cccCCcccEEEecCCCC--------ccccchhhhccC-CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc
Confidence 45566666666665542 246777777777 8888888886 46888877777888888887764 2222
Q ss_pred cCCCeeecCCCCCCcccCcccc------------------------------CCCCCcEEEecCCC-CcCCCCCCCCCCC
Q 039656 238 WKGEKYLNVDGSAISHLPSSIA------------------------------DLNKLEDLSFFGCK-ASVLPRVLSGLSS 286 (660)
Q Consensus 238 ~~~l~~L~l~~~~l~~lp~si~------------------------------~L~~L~~L~l~~~~-~~~lp~~l~~L~~ 286 (660)
+.+++.|++++|.+..+|..+. ..++|+.|++++|. +..+|.+++++++
T Consensus 724 ~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 724 STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 2345566666666555554320 01234444444443 3345555555555
Q ss_pred CCEEEccCCC-CCCCCccc--------------------CCCcccCccccccccceecchhhhcCCCCCeecccCccCCC
Q 039656 287 LKWMELRDCD-LIKIPQDI--------------------GSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLR 345 (660)
Q Consensus 287 L~~L~Ls~~~-l~~lp~~l--------------------~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~ 345 (660)
|+.|+|++|. +..+|..+ ....+|+.|+|++|.++.+|.++..+++|+.|+|++|+.++
T Consensus 804 L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC
Confidence 5555555543 22233322 01246778888888889999999999999999999999999
Q ss_pred CCCCC---CcCCcEEecccCcCCcccCC
Q 039656 346 SLPEL---PIRLICLDARNCERLRTLQE 370 (660)
Q Consensus 346 ~lp~~---~~~L~~L~l~~c~~L~~l~~ 370 (660)
.+|.. +++|+.|++.+|.+|+.++.
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ccCcccccccCCCeeecCCCcccccccC
Confidence 99865 56778889999999987654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=1.6e-16 Score=168.07 Aligned_cols=257 Identities=21% Similarity=0.213 Sum_probs=157.0
Q ss_pred CeEeecHHHHHHHHHHHhhhccCCCCCcccccCchhHHHHhhcCcCCCcEEEEEeecCCCeeeecCcccccCCCCccEEE
Q 039656 94 NKLQMHDLLQEMGQEIVRQESVRDPSKRSRLWHHEDVYNVLKRNKGTIAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLK 173 (660)
Q Consensus 94 ~~~~MHDLl~d~~~~i~~~e~~~~p~~~~rL~~~~di~~vl~~~~~~~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~ 173 (660)
|.++--||.|.....|..++-..-|.-++ +-...+....+........+.-..++++.++...+...+|..+.+|-+|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrs-lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRS-LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhh-hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 34555555555555555544211111111 11112233444444444445555666677777777888888888999999
Q ss_pred EecCCCCCcccCCcceecCCccc-cCCcCceEEEeeCCCCCCC-CCCC-CCCCceEEeCCCCCCcccc-------CCCee
Q 039656 174 FYMPNRDGFSIMSSKVHLDQGLE-YLPEELRYLHWYGYPLRTL-PSNF-DPENLIALNLPYSKVEQIW-------KGEKY 243 (660)
Q Consensus 174 l~~n~~~~~~~~~~~~~lp~~l~-~l~~~Lr~L~l~~~~l~~l-P~~~-~l~~L~~L~L~~n~l~~l~-------~~l~~ 243 (660)
|+.|+++ .+|...+ .+| +|+.|++..|.++.. -..| .+++|+.|.|..|.|.++- .+++.
T Consensus 204 LsrNrit---------tLp~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 204 LSRNRIT---------TLPQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred cccCccc---------ccCHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 9888875 5665444 477 888888888877655 2445 6777777777777777663 34567
Q ss_pred ecCCCCCCcccCc-cccCCCCCcEEEecCCCCcCC-CCCCCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccc
Q 039656 244 LNVDGSAISHLPS-SIADLNKLEDLSFFGCKASVL-PRVLSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNF 320 (660)
Q Consensus 244 L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~l-p~~l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l 320 (660)
|++..|++..+-+ ++.+|+.|+.|++++|.+..+ ++.+.-.++|+.|+|++|++.++++ .+..|..|++|.|++|.+
T Consensus 274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred eecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence 7777777776654 567777777777777776654 4455666777777777777777554 455566666666666666
Q ss_pred eecchh-hhcCCCCCeecccCccCCCCCCCC------CcCCcEEeccc
Q 039656 321 EHLPAS-IKKLSRLTYLNLSGCNMLRSLPEL------PIRLICLDARN 361 (660)
Q Consensus 321 ~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~------~~~L~~L~l~~ 361 (660)
..+-+. +..+++|++|+|++|.....+.+. +++|+.|.+.+
T Consensus 354 ~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 354 DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 654432 455566666666665544433221 44555555544
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=3.8e-17 Score=148.36 Aligned_cols=157 Identities=26% Similarity=0.380 Sum_probs=112.1
Q ss_pred cCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccCCCe
Q 039656 164 TSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWKGEK 242 (660)
Q Consensus 164 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~~l~ 242 (660)
-+|.+...|.+++|.++ .+|+.+..+. +|++|++.+|.++.+|..+ .+++|+.|++.
T Consensus 30 f~~s~ITrLtLSHNKl~---------~vppnia~l~-nlevln~~nnqie~lp~~issl~klr~lnvg------------ 87 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT---------VVPPNIAELK-NLEVLNLSNNQIEELPTSISSLPKLRILNVG------------ 87 (264)
T ss_pred cchhhhhhhhcccCcee---------ecCCcHHHhh-hhhhhhcccchhhhcChhhhhchhhhheecc------------
Confidence 34555566666666552 5555665555 5666666666666666555 55555555544
Q ss_pred eecCCCCCCcccCccccCCCCCcEEEecCCCCc--CCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccc
Q 039656 243 YLNVDGSAISHLPSSIADLNKLEDLSFFGCKAS--VLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNF 320 (660)
Q Consensus 243 ~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~--~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l 320 (660)
-|++..+|..+|.++.|++||+.+|++. .+|..+..+..|+.|+|++|.+.-+|++++.+++|+.|.+..|.+
T Consensus 88 -----mnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 88 -----MNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred -----hhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence 4444567778888888888888888754 578888888888888888888888888888888888888888888
Q ss_pred eecchhhhcCCCCCeecccCccCCCCCC
Q 039656 321 EHLPASIKKLSRLTYLNLSGCNMLRSLP 348 (660)
Q Consensus 321 ~~lp~~i~~l~~L~~L~L~~c~~l~~lp 348 (660)
-++|..++.+++|+.|++.+|. ++.+|
T Consensus 163 l~lpkeig~lt~lrelhiqgnr-l~vlp 189 (264)
T KOG0617|consen 163 LSLPKEIGDLTRLRELHIQGNR-LTVLP 189 (264)
T ss_pred hhCcHHHHHHHHHHHHhcccce-eeecC
Confidence 8888888888888888888765 44444
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=3.3e-14 Score=163.37 Aligned_cols=180 Identities=22% Similarity=0.384 Sum_probs=138.3
Q ss_pred CCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccC----CCe
Q 039656 167 SNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWK----GEK 242 (660)
Q Consensus 167 ~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~----~l~ 242 (660)
++|+.|++++|.+. .+|..+. .+|++|++++|.++.+|..+ ..+|+.|+|++|++..+|. +++
T Consensus 199 ~~L~~L~Ls~N~Lt---------sLP~~l~---~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~s~L~ 265 (754)
T PRK15370 199 EQITTLILDNNELK---------SLPENLQ---GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLPSALQ 265 (754)
T ss_pred cCCcEEEecCCCCC---------cCChhhc---cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHhCCCC
Confidence 47889999888774 4565443 37999999999988888765 3578899999998887643 678
Q ss_pred eecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCcccccccccee
Q 039656 243 YLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEH 322 (660)
Q Consensus 243 ~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~ 322 (660)
.|++++|.++.+|..+. .+|+.|++++|++..+|..+. ++|+.|++++|.+..+|..+. ++|+.|++++|.++.
T Consensus 266 ~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 266 SLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTS 339 (754)
T ss_pred EEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCcccc
Confidence 89999999998888664 589999999998888886553 478888888888888776553 678888888888888
Q ss_pred cchhhhcCCCCCeecccCccCCCCCCC-CCcCCcEEecccCcCCcccC
Q 039656 323 LPASIKKLSRLTYLNLSGCNMLRSLPE-LPIRLICLDARNCERLRTLQ 369 (660)
Q Consensus 323 lp~~i~~l~~L~~L~L~~c~~l~~lp~-~~~~L~~L~l~~c~~L~~l~ 369 (660)
+|..+. ++|+.|+|++|+. ..+|. ++++|+.|++.+| .|..++
T Consensus 340 LP~~l~--~sL~~L~Ls~N~L-~~LP~~lp~~L~~LdLs~N-~Lt~LP 383 (754)
T PRK15370 340 LPASLP--PELQVLDVSKNQI-TVLPETLPPTITTLDVSRN-ALTNLP 383 (754)
T ss_pred CChhhc--CcccEEECCCCCC-CcCChhhcCCcCEEECCCC-cCCCCC
Confidence 887664 6888888888764 45764 4678888888887 355443
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=4.2e-16 Score=141.57 Aligned_cols=148 Identities=27% Similarity=0.448 Sum_probs=135.2
Q ss_pred cCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCcc
Q 039656 158 LACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQ 236 (660)
Q Consensus 158 l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~ 236 (660)
.-+.....+.+|+.|.+++|.+ ..+|..+..++ +||.|++.-|.+..+|..| .++.|+.|||.+|++.+
T Consensus 47 ~vppnia~l~nlevln~~nnqi---------e~lp~~issl~-klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQI---------EELPTSISSLP-KLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchh---------hhcChhhhhch-hhhheecchhhhhcCccccCCCchhhhhhcccccccc
Confidence 3345678999999999999987 48999999999 9999999999999999999 89999999999998753
Q ss_pred ccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccc
Q 039656 237 IWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLS 316 (660)
Q Consensus 237 l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~ 316 (660)
..+|..+..++.|+.|.+++|....+|+.+++|++|+.|.+++|.+..+|..++.++.|+.|.+.
T Consensus 117 ---------------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 117 ---------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred ---------------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 35788888899999999999999999999999999999999999999999999999999999999
Q ss_pred cccceecchhhhcC
Q 039656 317 GNNFEHLPASIKKL 330 (660)
Q Consensus 317 ~n~l~~lp~~i~~l 330 (660)
+|.++.+|..++++
T Consensus 182 gnrl~vlppel~~l 195 (264)
T KOG0617|consen 182 GNRLTVLPPELANL 195 (264)
T ss_pred cceeeecChhhhhh
Confidence 99999999887764
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=1.7e-14 Score=165.76 Aligned_cols=180 Identities=23% Similarity=0.364 Sum_probs=146.3
Q ss_pred CCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc----CCCe
Q 039656 167 SNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW----KGEK 242 (660)
Q Consensus 167 ~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~----~~l~ 242 (660)
++|+.|++++|.+. .+|..+ +++|+.|++++|.+..+|..+ ..+|+.|++++|+|+.+| ++++
T Consensus 220 ~nL~~L~Ls~N~Lt---------sLP~~l---~~~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~~sL~ 286 (754)
T PRK15370 220 GNIKTLYANSNQLT---------SIPATL---PDTIQEMELSINRITELPERL-PSALQSLDLFHNKISCLPENLPEELR 286 (754)
T ss_pred cCCCEEECCCCccc---------cCChhh---hccccEEECcCCccCcCChhH-hCCCCEEECcCCccCccccccCCCCc
Confidence 48999999999874 455543 448999999999999999776 358999999999998764 4789
Q ss_pred eecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCcccccccccee
Q 039656 243 YLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEH 322 (660)
Q Consensus 243 ~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~ 322 (660)
.|++++|.++.+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|+++.
T Consensus 287 ~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 287 YLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITV 360 (754)
T ss_pred EEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCCc
Confidence 99999999999987654 579999999999888887553 689999999999999987764 789999999999999
Q ss_pred cchhhhcCCCCCeecccCccCCCCCCCC-CcCCcEEecccCcCCcccC
Q 039656 323 LPASIKKLSRLTYLNLSGCNMLRSLPEL-PIRLICLDARNCERLRTLQ 369 (660)
Q Consensus 323 lp~~i~~l~~L~~L~L~~c~~l~~lp~~-~~~L~~L~l~~c~~L~~l~ 369 (660)
+|..+. ++|+.|+|++|+. ..+|.. +.+|+.|++.++ +|..++
T Consensus 361 LP~~lp--~~L~~LdLs~N~L-t~LP~~l~~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 361 LPETLP--PTITTLDVSRNAL-TNLPENLPAALQIMQASRN-NLVRLP 404 (754)
T ss_pred CChhhc--CCcCEEECCCCcC-CCCCHhHHHHHHHHhhccC-CcccCc
Confidence 997663 6899999999864 467644 567888888875 455444
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.51 E-value=1.1e-14 Score=154.38 Aligned_cols=215 Identities=23% Similarity=0.285 Sum_probs=136.5
Q ss_pred EeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCC---c-c-----------eecCCccccCCcCceEEEeeCCC
Q 039656 147 FLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMS---S-K-----------VHLDQGLEYLPEELRYLHWYGYP 211 (660)
Q Consensus 147 ~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~---~-~-----------~~lp~~l~~l~~~Lr~L~l~~~~ 211 (660)
.+|+++++.-.+....|.++++|+.+.+..|.+....... . . ..-.+.+..+| .||.||++.|.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrslDLSrN~ 160 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRSLDLSRNL 160 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh-hhhhhhhhhch
Confidence 4566666555666677888888888888888764211100 0 0 00112344555 66777777776
Q ss_pred CCCCCCC-C-CCCCceEEeCCCCCCcccc-------CCCeeecCCCCCCcccCc-cccCCCCCcEEEecCCCCcCC-CCC
Q 039656 212 LRTLPSN-F-DPENLIALNLPYSKVEQIW-------KGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKASVL-PRV 280 (660)
Q Consensus 212 l~~lP~~-~-~l~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~l-p~~ 280 (660)
+..+|.. | .-.++++|+|+.|.|+.+- ..+..|.++.|+|+.+|. ++.+|++|+.|+|..|.+... --.
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh
Confidence 6666633 3 3356777777777766552 245566677777777765 445577777777777775543 234
Q ss_pred CCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccceecch-hhhcCCCCCeecccCccCCCCCCCC---CcCCc
Q 039656 281 LSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSGCNMLRSLPEL---PIRLI 355 (660)
Q Consensus 281 l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~ 355 (660)
|.+|++|+.|.|..|++..+-+ .|..+.++++|+|..|+++.+-. ++-+|+.|+.|+|++|...+--++. -++|+
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 6677777777777777777544 46677788888888888875543 5678888888888887655443332 56777
Q ss_pred EEecccC
Q 039656 356 CLDARNC 362 (660)
Q Consensus 356 ~L~l~~c 362 (660)
.|++++.
T Consensus 321 ~LdLs~N 327 (873)
T KOG4194|consen 321 ELDLSSN 327 (873)
T ss_pred eEecccc
Confidence 7777653
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=1.4e-15 Score=154.70 Aligned_cols=107 Identities=24% Similarity=0.340 Sum_probs=53.4
Q ss_pred CccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchh-hhcCCCC
Q 039656 255 PSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPAS-IKKLSRL 333 (660)
Q Consensus 255 p~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L 333 (660)
|..+..+++|..|++++|-+..+|..++.+..|+.|+++.|++..+|..+..+..|+.+-.+.|++..++.+ +++|.+|
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred hHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 333344444444444444444444444444444444444444444444444444444444444444444444 6667777
Q ss_pred CeecccCccCCCCCCCC---CcCCcEEecccC
Q 039656 334 TYLNLSGCNMLRSLPEL---PIRLICLDARNC 362 (660)
Q Consensus 334 ~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c 362 (660)
.+|+|.+|. ++.+|.. +.+|++|++.+.
T Consensus 508 ~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 508 TTLDLQNND-LQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred ceeccCCCc-hhhCChhhccccceeEEEecCC
Confidence 777776543 4555543 445555555543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.4e-13 Score=157.42 Aligned_cols=177 Identities=30% Similarity=0.322 Sum_probs=112.6
Q ss_pred CccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccc---cCCCeee
Q 039656 168 NLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQI---WKGEKYL 244 (660)
Q Consensus 168 ~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l---~~~l~~L 244 (660)
+|+.|.+.+|.++ .+|. ++++|++|++++|.++.+|.. +++|+.|++.+|.++.+ +.+++.|
T Consensus 223 ~L~~L~L~~N~Lt---------~LP~----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L 287 (788)
T PRK15387 223 HITTLVIPDNNLT---------SLPA----LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKL 287 (788)
T ss_pred CCCEEEccCCcCC---------CCCC----CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEE
Confidence 6788888877764 3443 234788888888888777753 35677777777766654 3456666
Q ss_pred cCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCC-----------------CCCCCEEEccCCCCCCCCcccCCC
Q 039656 245 NVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSG-----------------LSSLKWMELRDCDLIKIPQDIGSL 307 (660)
Q Consensus 245 ~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~-----------------L~~L~~L~Ls~~~l~~lp~~l~~l 307 (660)
++++|.++.+|.. +++|+.|++++|++..+|..... ..+|+.|+|++|++..+|.. .
T Consensus 288 ~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p 361 (788)
T PRK15387 288 WIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL---P 361 (788)
T ss_pred ECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC---C
Confidence 6777777666652 35666666666666555431111 12566667776666666643 2
Q ss_pred cccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCCCcCCcEEecccCcCCcccCC
Q 039656 308 SSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPELPIRLICLDARNCERLRTLQE 370 (660)
Q Consensus 308 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~~~~L~~L~l~~c~~L~~l~~ 370 (660)
.+|+.|++++|.++.+|.. .++|+.|+|++|+ +..+|..+++|+.|+++++. |+.++.
T Consensus 362 ~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N~-LssIP~ 419 (788)
T PRK15387 362 SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNR-LTSLPVLPSELKELMVSGNR-LTSLPM 419 (788)
T ss_pred cccceehhhccccccCccc---ccccceEEecCCc-ccCCCCcccCCCEEEccCCc-CCCCCc
Confidence 4556666666666666643 3467788887765 44677777788888887763 555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=5.9e-14 Score=160.45 Aligned_cols=182 Identities=28% Similarity=0.338 Sum_probs=132.6
Q ss_pred CCCccEEEEecCCCCCcccCCcceecCCc-------------cccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCC
Q 039656 166 MSNLRLLKFYMPNRDGFSIMSSKVHLDQG-------------LEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYS 232 (660)
Q Consensus 166 l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~-------------l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n 232 (660)
+++|++|++++|.++... .+|.. +..++.+|+.|++++|.++.+|.. +++|+.|++++|
T Consensus 241 p~~Lk~LdLs~N~LtsLP------~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~--p~~L~~LdLS~N 312 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLP------VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDN 312 (788)
T ss_pred CCCCcEEEecCCccCccc------CcccccceeeccCCchhhhhhchhhcCEEECcCCcccccccc--ccccceeECCCC
Confidence 578999999999875311 01111 111233566666666666666653 367777888777
Q ss_pred CCcccc---CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcc
Q 039656 233 KVEQIW---KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSS 309 (660)
Q Consensus 233 ~l~~l~---~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~ 309 (660)
+++.++ ..++.|.+++|.++.+|.. ..+|+.|++++|++..+|.. ..+|+.|++++|.+..+|.. ..+
T Consensus 313 ~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~ 383 (788)
T PRK15387 313 QLASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSG 383 (788)
T ss_pred ccccCCCCcccccccccccCcccccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccc
Confidence 777653 3567777777777777752 25899999999999999873 35788999999999998864 357
Q ss_pred cCccccccccceecchhhhcCCCCCeecccCccCCCCCCCCCcCCcEEecccCcCCcccC
Q 039656 310 LEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPELPIRLICLDARNCERLRTLQ 369 (660)
Q Consensus 310 L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~~~~L~~L~l~~c~~L~~l~ 369 (660)
|+.|++++|.++.+|.. .++|+.|++++|. +..+|..+.+|+.|++.++ .++.+|
T Consensus 384 L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP 438 (788)
T PRK15387 384 LKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLP 438 (788)
T ss_pred cceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcchhhhhhhhhccC-cccccC
Confidence 99999999999999864 3689999999986 5679988888999988775 355443
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.47 E-value=5.5e-16 Score=157.69 Aligned_cols=149 Identities=26% Similarity=0.338 Sum_probs=65.3
Q ss_pred ecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccC------CCeeecCCCCCCcccCccccCCC
Q 039656 190 HLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWK------GEKYLNVDGSAISHLPSSIADLN 262 (660)
Q Consensus 190 ~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~------~l~~L~l~~~~l~~lp~si~~L~ 262 (660)
.+|++++.+. .|..|+..+|.+.++|..+ .+..|..|++.+|+++.+++ .++.|+...|-++.+|+.++.+.
T Consensus 128 el~~~i~~~~-~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~ 206 (565)
T KOG0472|consen 128 ELPDSIGRLL-DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLE 206 (565)
T ss_pred ecCchHHHHh-hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchh
Confidence 3444444443 3444444444444444433 34444444444444444322 23344444444444444444444
Q ss_pred CCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccC-CCcccCccccccccceecchhhhcCCCCCeecccC
Q 039656 263 KLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIG-SLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSG 340 (660)
Q Consensus 263 ~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~-~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~ 340 (660)
+|..|++..|++..+| +|.++..|++|+++.|.+..+|...+ ++.+|..|||..|+++++|..+..+.+|.+|++++
T Consensus 207 ~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred hhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC
Confidence 4444444444444444 24444444444444444444443333 44444444444444444444444444444444443
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=1.3e-14 Score=161.44 Aligned_cols=192 Identities=21% Similarity=0.276 Sum_probs=145.0
Q ss_pred ccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccC
Q 039656 161 GTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWK 239 (660)
Q Consensus 161 ~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~ 239 (660)
+....+.+|..|...+|.+. .+|..+.... +|++|....|.++.+|... .++.|++|+|..|+|..+|+
T Consensus 258 ~wi~~~~nle~l~~n~N~l~---------~lp~ri~~~~-~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLV---------ALPLRISRIT-SLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred HHHHhcccceEecccchhHH---------hhHHHHhhhh-hHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccch
Confidence 45556667777777777653 4555555555 6666666666666666655 46667777776666665543
Q ss_pred C--------------------------------CeeecCCCCCCc--ccCccccCCCCCcEEEecCCCCcCCCCC-CCCC
Q 039656 240 G--------------------------------EKYLNVDGSAIS--HLPSSIADLNKLEDLSFFGCKASVLPRV-LSGL 284 (660)
Q Consensus 240 ~--------------------------------l~~L~l~~~~l~--~lp~si~~L~~L~~L~l~~~~~~~lp~~-l~~L 284 (660)
. ++.|.+.+|.++ .+|. +.+.++|++|+|++|++..+|.. +.+|
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kl 406 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKL 406 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhch
Confidence 1 234446667766 2333 67889999999999999999864 6789
Q ss_pred CCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCC-CCCCC-C-cCCcEEeccc
Q 039656 285 SSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLR-SLPEL-P-IRLICLDARN 361 (660)
Q Consensus 285 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~-~lp~~-~-~~L~~L~l~~ 361 (660)
..|++|+|++|++..+|..+..+..|++|...+|.+..+| .+.+++.|+.+|++.|+... .+|.. | ++|++|++++
T Consensus 407 e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 407 EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSG 485 (1081)
T ss_pred HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccC
Confidence 9999999999999999999999999999999999999999 89999999999999776543 24543 5 8999999998
Q ss_pred CcC
Q 039656 362 CER 364 (660)
Q Consensus 362 c~~ 364 (660)
.+.
T Consensus 486 N~~ 488 (1081)
T KOG0618|consen 486 NTR 488 (1081)
T ss_pred Ccc
Confidence 874
No 19
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=6.6e-14 Score=148.44 Aligned_cols=187 Identities=25% Similarity=0.339 Sum_probs=155.9
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccCC---
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWKG--- 240 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~~--- 240 (660)
.+..-...+++.|++. .+|..+..+- .|..|.++.|.+..+|..+ ++..|..|+|+.|++..+|.+
T Consensus 73 ~ltdt~~aDlsrNR~~---------elp~~~~~f~-~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~ 142 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS---------ELPEEACAFV-SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD 142 (722)
T ss_pred cccchhhhhccccccc---------cCchHHHHHH-HHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhc
Confidence 4445556677777663 6677666666 7888888888888888777 888888899999988888774
Q ss_pred --CeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccc
Q 039656 241 --EKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGN 318 (660)
Q Consensus 241 --l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n 318 (660)
++.|-+++|+++.+|..|+.+..|..||.+.|.+..+|..++.+.+|+.|+++.|++..+|+.+..| .|..||+++|
T Consensus 143 lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 143 LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN 221 (722)
T ss_pred CcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccC
Confidence 4777789999999999999999999999999999999999999999999999999999999999855 5999999999
Q ss_pred cceecchhhhcCCCCCeecccCccCCCCCCCC------CcCCcEEecccCc
Q 039656 319 NFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL------PIRLICLDARNCE 363 (660)
Q Consensus 319 ~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~------~~~L~~L~l~~c~ 363 (660)
++..+|..+.+|+.|++|-|.+|+ +++-|.. .--.++|++.-|.
T Consensus 222 kis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 222 KISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 999999999999999999999776 5665532 2335677777773
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.26 E-value=1.1e-12 Score=146.24 Aligned_cols=170 Identities=29% Similarity=0.379 Sum_probs=141.6
Q ss_pred cCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccC------CCeeecCCCCCCcccCccccCCCCCcEEEe
Q 039656 197 YLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWK------GEKYLNVDGSAISHLPSSIADLNKLEDLSF 269 (660)
Q Consensus 197 ~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~------~l~~L~l~~~~l~~lp~si~~L~~L~~L~l 269 (660)
..|.+|++++++.+.+..+|+++ .+.+|+.|+..+|++..++. .+++|.+..|.++.+|+....++.|++|+|
T Consensus 238 p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 35568999999999999999777 89999999999999987754 457788888888989888888899999999
Q ss_pred cCCCCcCCCC--------------------------------------------------CCCCCCCCCEEEccCCCCCC
Q 039656 270 FGCKASVLPR--------------------------------------------------VLSGLSSLKWMELRDCDLIK 299 (660)
Q Consensus 270 ~~~~~~~lp~--------------------------------------------------~l~~L~~L~~L~Ls~~~l~~ 299 (660)
..|++..+|+ .+.++++|+.|+|++|.+..
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 8888766332 15567899999999999999
Q ss_pred CCc-ccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC--CcCCcEEecccCcCCccc
Q 039656 300 IPQ-DIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL--PIRLICLDARNCERLRTL 368 (660)
Q Consensus 300 lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~L~~l 368 (660)
+|. .+.++..|+.|+|+||+++.+|..+..+..|++|...+|. +..+|++ ++.|+.+|++ |.+|+.+
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS-~N~L~~~ 467 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLS-CNNLSEV 467 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecc-cchhhhh
Confidence 987 4788999999999999999999999999999999988754 6678876 7889999985 4444433
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=6e-13 Score=135.67 Aligned_cols=202 Identities=19% Similarity=0.239 Sum_probs=157.6
Q ss_pred EEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC--C
Q 039656 143 IEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF--D 220 (660)
Q Consensus 143 v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~--~ 220 (660)
...|.+|.+.+ ..+++.+|+.+++||.|+|++|.++ ..-|..+..++.-++.+..++|.|+.+|... .
T Consensus 69 tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~Is--------~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 69 TVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNIS--------FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred ceEEEeccCCc--ccCChhhccchhhhceecccccchh--------hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 34455555554 5688999999999999999999985 2446777778744444455558999999765 8
Q ss_pred CCCceEEeCCCCCCcccc-------CCCeeecCCCCCCcccCc-cccCCCCCcEEEecCCCCcC----------------
Q 039656 221 PENLIALNLPYSKVEQIW-------KGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKASV---------------- 276 (660)
Q Consensus 221 l~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~---------------- 276 (660)
+..|+.|.+.-|++.-+. +.+..|.+..|.+..++. ++..+..++.+.+..|....
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 999999999988886552 355677788999999887 78889999998887765211
Q ss_pred -----------------------------------------CCC------CCCCCCCCCEEEccCCCCCCC-CcccCCCc
Q 039656 277 -----------------------------------------LPR------VLSGLSSLKWMELRDCDLIKI-PQDIGSLS 308 (660)
Q Consensus 277 -----------------------------------------lp~------~l~~L~~L~~L~Ls~~~l~~l-p~~l~~l~ 308 (660)
.|. .|..|++|+.|+|++|+++++ +.+|..+.
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 111 266899999999999999995 45799999
Q ss_pred ccCccccccccceecchh-hhcCCCCCeecccCccCCCCCCCCCcCC
Q 039656 309 SLEWFVLSGNNFEHLPAS-IKKLSRLTYLNLSGCNMLRSLPELPIRL 354 (660)
Q Consensus 309 ~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~~~~L 354 (660)
+|+.|.|..|++..+... +.++..|+.|+|.+|+...--|..+..+
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 999999999999977654 5889999999999999887777664433
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.7e-11 Score=125.41 Aligned_cols=203 Identities=17% Similarity=0.165 Sum_probs=146.5
Q ss_pred hhcCcCCCcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCC
Q 039656 134 LKRNKGTIAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLR 213 (660)
Q Consensus 134 l~~~~~~~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~ 213 (660)
..+++..+.++.|.+|-..+...... .....++++|.|+|+.|-+. ....+-.-...+| +|+.|+++.|.+.
T Consensus 114 ~akQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~------nw~~v~~i~eqLp-~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 114 AAKQSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFH------NWFPVLKIAEQLP-SLENLNLSSNRLS 185 (505)
T ss_pred HHHhhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHH------hHHHHHHHHHhcc-cchhccccccccc
Confidence 33444556677777776665433222 45567999999999998775 3334444566777 9999999999886
Q ss_pred CCCCCC---CCCCceEEeCCCCCCcc--------ccCCCeeecCCCCC-CcccCccccCCCCCcEEEecCCCCcCCC--C
Q 039656 214 TLPSNF---DPENLIALNLPYSKVEQ--------IWKGEKYLNVDGSA-ISHLPSSIADLNKLEDLSFFGCKASVLP--R 279 (660)
Q Consensus 214 ~lP~~~---~l~~L~~L~L~~n~l~~--------l~~~l~~L~l~~~~-l~~lp~si~~L~~L~~L~l~~~~~~~lp--~ 279 (660)
..-++. .+.+|+.|.++.|.++. .||++..|.+..|. +..--.+...+..|+.|||++|.+..++ .
T Consensus 186 ~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 186 NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc
Confidence 554443 68899999999998863 37888889988884 3222223456788999999999987776 5
Q ss_pred CCCCCCCCCEEEccCCCCCC--CCcc-----cCCCcccCccccccccceecch--hhhcCCCCCeecccCccCC
Q 039656 280 VLSGLSSLKWMELRDCDLIK--IPQD-----IGSLSSLEWFVLSGNNFEHLPA--SIKKLSRLTYLNLSGCNML 344 (660)
Q Consensus 280 ~l~~L~~L~~L~Ls~~~l~~--lp~~-----l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c~~l 344 (660)
..+.|+.|+.|+++.|.+.. +|+. ...+++|++|++..|++..+++ .+..+++|+.|.+..|...
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 57889999999999998887 5554 4567889999999999876663 3556677777777665543
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=4.7e-11 Score=125.74 Aligned_cols=149 Identities=20% Similarity=0.202 Sum_probs=77.4
Q ss_pred ccccCCcCceEEEeeCCCCC-CCCCCC-CC---CCceEEeCCCCCCcc------------ccCCCeeecCCCCCCc----
Q 039656 194 GLEYLPEELRYLHWYGYPLR-TLPSNF-DP---ENLIALNLPYSKVEQ------------IWKGEKYLNVDGSAIS---- 252 (660)
Q Consensus 194 ~l~~l~~~Lr~L~l~~~~l~-~lP~~~-~l---~~L~~L~L~~n~l~~------------l~~~l~~L~l~~~~l~---- 252 (660)
.+..++ +|+.|++++|++. ..+..+ .+ ++|++|++++|++.. .++.++.|++++|.++
T Consensus 76 ~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 76 GLTKGC-GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHhcC-ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 333333 5566666555553 222222 22 235566665555541 0134455555555544
Q ss_pred -ccCccccCCCCCcEEEecCCCCc-----CCCCCCCCCCCCCEEEccCCCCCC-----CCcccCCCcccCccccccccce
Q 039656 253 -HLPSSIADLNKLEDLSFFGCKAS-----VLPRVLSGLSSLKWMELRDCDLIK-----IPQDIGSLSSLEWFVLSGNNFE 321 (660)
Q Consensus 253 -~lp~si~~L~~L~~L~l~~~~~~-----~lp~~l~~L~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 321 (660)
.++..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+ ++..+..+++|++|++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 33444555666777777776654 133334445677777777776653 3344555666777777776665
Q ss_pred e-cchhh-hc----CCCCCeecccCccC
Q 039656 322 H-LPASI-KK----LSRLTYLNLSGCNM 343 (660)
Q Consensus 322 ~-lp~~i-~~----l~~L~~L~L~~c~~ 343 (660)
. -+..+ .. .+.|+.|++++|..
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 2 11111 11 35677777776654
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=1.2e-10 Score=126.62 Aligned_cols=141 Identities=30% Similarity=0.427 Sum_probs=71.2
Q ss_pred CceEEEeeCCCCCCCCCCCCCC--CceEEeCCCCCCccc------cCCCeeecCCCCCCcccCccccCCCCCcEEEecCC
Q 039656 201 ELRYLHWYGYPLRTLPSNFDPE--NLIALNLPYSKVEQI------WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGC 272 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~~l~--~L~~L~L~~n~l~~l------~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~ 272 (660)
.++.|++.++.+..+|....+. +|+.|++++|++..+ +++++.|+++.|.+..+|...+.+++|+.|++++|
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N 196 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN 196 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC
Confidence 4455555555555555444221 455555555554443 22344555555555555554445555555555555
Q ss_pred CCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCc
Q 039656 273 KASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGC 341 (660)
Q Consensus 273 ~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 341 (660)
++..+|..+..+..|+.|.+++|.+..++..+..+.++..|.+.+|.+..++..++.+++|++|++++|
T Consensus 197 ~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 197 KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 555555544444445555555554444444555555555555555555554555555555555555543
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=9.8e-12 Score=132.17 Aligned_cols=167 Identities=23% Similarity=0.329 Sum_probs=130.4
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCC---
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGE--- 241 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l--- 241 (660)
.+..|..|.++.|.+ -.+|..+..+. .|.+|+++.|.+..+|..+..--|+.|-+++|+++.+|+.+
T Consensus 96 ~f~~Le~liLy~n~~---------r~ip~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 96 AFVSLESLILYHNCI---------RTIPEAICNLE-ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLL 165 (722)
T ss_pred HHHHHHHHHHHhccc---------eecchhhhhhh-HHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccc
Confidence 334556666666654 25666666665 66677777777766666664445666666777666665543
Q ss_pred ---eeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccc
Q 039656 242 ---KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGN 318 (660)
Q Consensus 242 ---~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n 318 (660)
..|+.++|.+..+|+-++.|.+|+.|++..|.+..+|..+..|+ |..||++.|++..||-.|.+|+.|++|-|.+|
T Consensus 166 ~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccC
Confidence 45667888889999999999999999999999999999999664 99999999999999999999999999999999
Q ss_pred cceecchhhh---cCCCCCeecccCcc
Q 039656 319 NFEHLPASIK---KLSRLTYLNLSGCN 342 (660)
Q Consensus 319 ~l~~lp~~i~---~l~~L~~L~L~~c~ 342 (660)
.+.+-|..|. ...-.++|+..-|.
T Consensus 245 PLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 245 PLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCCCChHHHHhccceeeeeeecchhcc
Confidence 9999998874 34445788888885
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=7.1e-11 Score=124.33 Aligned_cols=197 Identities=19% Similarity=0.231 Sum_probs=144.9
Q ss_pred ccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCC-------CCC-CCCCceEEeCCCC
Q 039656 161 GTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLP-------SNF-DPENLIALNLPYS 232 (660)
Q Consensus 161 ~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP-------~~~-~l~~L~~L~L~~n 232 (660)
..|..+.+|+.|++.++.++. .....++..+...+ .|+.|+++++.+...| ..+ .+.+|+.|++++|
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~----~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGE----EAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHHHhhccEEeecCCCCcH----HHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 346677889999999888742 11124555666666 7999999998776322 233 6789999999999
Q ss_pred CCccc--------c--CCCeeecCCCCCCc-----ccCccccCC-CCCcEEEecCCCCc-----CCCCCCCCCCCCCEEE
Q 039656 233 KVEQI--------W--KGEKYLNVDGSAIS-----HLPSSIADL-NKLEDLSFFGCKAS-----VLPRVLSGLSSLKWME 291 (660)
Q Consensus 233 ~l~~l--------~--~~l~~L~l~~~~l~-----~lp~si~~L-~~L~~L~l~~~~~~-----~lp~~l~~L~~L~~L~ 291 (660)
.+... . +.++.|++++|.+. .+..++..+ ++|+.|++++|.+. .++..+..+++|++|+
T Consensus 92 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 92 ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171 (319)
T ss_pred CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence 88632 1 23899999999887 344456677 89999999999976 3445566788999999
Q ss_pred ccCCCCCC-----CCcccCCCcccCccccccccce-----ecchhhhcCCCCCeecccCccCCCC--------CCCCCcC
Q 039656 292 LRDCDLIK-----IPQDIGSLSSLEWFVLSGNNFE-----HLPASIKKLSRLTYLNLSGCNMLRS--------LPELPIR 353 (660)
Q Consensus 292 Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~~l~~--------lp~~~~~ 353 (660)
+++|.+.+ ++..+..+++|+.|++++|.+. .++..+..+++|+.|++++|+.... ++.....
T Consensus 172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251 (319)
T ss_pred CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence 99999884 4455666789999999999876 3455667889999999999875531 1112367
Q ss_pred CcEEecccC
Q 039656 354 LICLDARNC 362 (660)
Q Consensus 354 L~~L~l~~c 362 (660)
|++|++.+|
T Consensus 252 L~~L~l~~n 260 (319)
T cd00116 252 LLTLSLSCN 260 (319)
T ss_pred ceEEEccCC
Confidence 888888877
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=3.8e-10 Score=107.05 Aligned_cols=83 Identities=29% Similarity=0.432 Sum_probs=27.0
Q ss_pred CCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCccc-CCCcccCccccccccceecc--hhhhcCCCCCeec
Q 039656 261 LNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDI-GSLSSLEWFVLSGNNFEHLP--ASIKKLSRLTYLN 337 (660)
Q Consensus 261 L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~ 337 (660)
+.+|+.|++++|.+..++. +..++.|+.|++++|.++.+++.+ ..+++|+.|++++|++..+- ..+..+++|+.|+
T Consensus 41 l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 4555555555555555543 555566666666666665554433 23555666666666555332 2345566666666
Q ss_pred ccCccCC
Q 039656 338 LSGCNML 344 (660)
Q Consensus 338 L~~c~~l 344 (660)
|.+|+..
T Consensus 120 L~~NPv~ 126 (175)
T PF14580_consen 120 LEGNPVC 126 (175)
T ss_dssp -TT-GGG
T ss_pred ccCCccc
Confidence 6666544
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.1e-10 Score=113.35 Aligned_cols=103 Identities=23% Similarity=0.314 Sum_probs=56.1
Q ss_pred cCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCcccccc
Q 039656 238 WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSG 317 (660)
Q Consensus 238 ~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~ 317 (660)
|..++.|++++|.|+.+.+++.-++.++.|+++.|.+..+.. +..|++|+.|||++|.++++..+-..+-+.++|.|++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 444555555566655555555555566666666665555444 5555556666666655555443333444555555555
Q ss_pred ccceecchhhhcCCCCCeecccCcc
Q 039656 318 NNFEHLPASIKKLSRLTYLNLSGCN 342 (660)
Q Consensus 318 n~l~~lp~~i~~l~~L~~L~L~~c~ 342 (660)
|.+..+. .++.|-+|..|++++|+
T Consensus 362 N~iE~LS-GL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 362 NKIETLS-GLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hhHhhhh-hhHhhhhheeccccccc
Confidence 5555443 45555555555555543
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=2.8e-10 Score=112.47 Aligned_cols=121 Identities=24% Similarity=0.259 Sum_probs=107.8
Q ss_pred CCceEEeCCCCCCccc------cCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCC
Q 039656 222 ENLIALNLPYSKVEQI------WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDC 295 (660)
Q Consensus 222 ~~L~~L~L~~n~l~~l------~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~ 295 (660)
+.|.+|||++|.|+.+ .|.++.|+++.|+|..+.. +..|.+|+.|||++|.+.++..+-.+|.+.+.|.|++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 6789999999998764 6788999999999999876 89999999999999999999888889999999999999
Q ss_pred CCCCCCcccCCCcccCccccccccceecc--hhhhcCCCCCeecccCccCC
Q 039656 296 DLIKIPQDIGSLSSLEWFVLSGNNFEHLP--ASIKKLSRLTYLNLSGCNML 344 (660)
Q Consensus 296 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~l 344 (660)
.+..+ .+++.+-+|..||+++|++..+. ..|++||.|++|.|.+|+..
T Consensus 363 ~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 363 KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 88776 37888999999999999999664 46899999999999998743
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.2e-09 Score=103.57 Aligned_cols=121 Identities=23% Similarity=0.308 Sum_probs=50.4
Q ss_pred CceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCC
Q 039656 201 ELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPR 279 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~ 279 (660)
++|.|+++||.++.+..-- .+.+|+.|++++|.|+ .++ .+..+++|++|++++|.+..+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-----------------~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-----------------KLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S-------------------T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCc-----------------ccc-CccChhhhhhcccCCCCCCcccc
Confidence 5777777777777765333 3566666666666654 443 36678999999999999998876
Q ss_pred CCC-CCCCCCEEEccCCCCCCCC--cccCCCcccCccccccccceecch----hhhcCCCCCeeccc
Q 039656 280 VLS-GLSSLKWMELRDCDLIKIP--QDIGSLSSLEWFVLSGNNFEHLPA----SIKKLSRLTYLNLS 339 (660)
Q Consensus 280 ~l~-~L~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~i~~l~~L~~L~L~ 339 (660)
.+. .+++|+.|+|++|++.++- ..+..+++|+.|+|.+|.+...+. .+..+|+|+.||-.
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 553 6899999999999988743 357788999999999999885553 35778888888754
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=3.2e-09 Score=115.51 Aligned_cols=177 Identities=29% Similarity=0.423 Sum_probs=138.2
Q ss_pred ccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccC--
Q 039656 163 FTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWK-- 239 (660)
Q Consensus 163 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~-- 239 (660)
....+.++.|++.+|.+. .++.....+..+|+.|++++|.+..+|..+ .+++|+.|++++|++..+++
T Consensus 112 ~~~~~~l~~L~l~~n~i~---------~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~ 182 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT---------DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL 182 (394)
T ss_pred hhcccceeEEecCCcccc---------cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh
Confidence 344567888888887763 555555544127888888888888887555 78888888888888877655
Q ss_pred ----CCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCcccc
Q 039656 240 ----GEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVL 315 (660)
Q Consensus 240 ----~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L 315 (660)
.++.|++++|.+..+|..+..+..|++|.+++|.....+..+.++.++..|.+.+|.+..++..++.+++|+.|++
T Consensus 183 ~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262 (394)
T ss_pred hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecc
Confidence 4577888888888888877777778888888887777777788888888888888888877888888888888888
Q ss_pred ccccceecchhhhcCCCCCeecccCccCCCCCCC
Q 039656 316 SGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPE 349 (660)
Q Consensus 316 ~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 349 (660)
++|.++.++. ++.+.+|+.|+++++.....+|.
T Consensus 263 s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 263 SNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccccccc-ccccCccCEEeccCccccccchh
Confidence 8888888886 88888888888888777666553
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.79 E-value=1.8e-10 Score=117.79 Aligned_cols=195 Identities=21% Similarity=0.255 Sum_probs=127.5
Q ss_pred eecCCCeeeecCcccccCCCCccEEEEec-CCCCCcccC---------------C-cceecCCccccCCcCceEEEeeCC
Q 039656 148 LDMSKIRDIHLACGTFTSMSNLRLLKFYM-PNRDGFSIM---------------S-SKVHLDQGLEYLPEELRYLHWYGY 210 (660)
Q Consensus 148 l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~-n~~~~~~~~---------------~-~~~~lp~~l~~l~~~Lr~L~l~~~ 210 (660)
+|++++....|.+++|+++.+|-.|.+++ |+++..... . ..-.....+..++ +|+.|.+.+|
T Consensus 96 LdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~-~l~lLslyDn 174 (498)
T KOG4237|consen 96 LDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP-SLSLLSLYDN 174 (498)
T ss_pred ecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh-hcchhcccch
Confidence 44555555557788888888888887777 655410000 0 0001112333444 5666666666
Q ss_pred CCCCCCC-CC-CCCCceEEeCCCCCCcc------c----------cCCCe-----------------------------e
Q 039656 211 PLRTLPS-NF-DPENLIALNLPYSKVEQ------I----------WKGEK-----------------------------Y 243 (660)
Q Consensus 211 ~l~~lP~-~~-~l~~L~~L~L~~n~l~~------l----------~~~l~-----------------------------~ 243 (660)
.++.++. .+ .+..++++.+..|.+.- + ..+.+ .
T Consensus 175 ~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~ 254 (498)
T KOG4237|consen 175 KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSR 254 (498)
T ss_pred hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHh
Confidence 6666665 33 56666666665554211 0 00000 0
Q ss_pred ecCCCCCCcccCc-cccCCCCCcEEEecCCCCcCC-CCCCCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccc
Q 039656 244 LNVDGSAISHLPS-SIADLNKLEDLSFFGCKASVL-PRVLSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNF 320 (660)
Q Consensus 244 L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~l-p~~l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l 320 (660)
+...|+.....|. .|..|++|+.|++++|++..+ +.+|.++..|+.|.|..|++..+.. .|.++..|+.|+|.+|+|
T Consensus 255 ~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 255 LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred hccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee
Confidence 0023333334443 578899999999999998877 5678899999999999999987543 578899999999999999
Q ss_pred ee-cchhhhcCCCCCeecccCccC
Q 039656 321 EH-LPASIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 321 ~~-lp~~i~~l~~L~~L~L~~c~~ 343 (660)
+. .|..+..+.+|.+|.|-.|+.
T Consensus 335 t~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 335 TTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred EEEecccccccceeeeeehccCcc
Confidence 94 566788999999999877653
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=8.7e-10 Score=114.38 Aligned_cols=189 Identities=19% Similarity=0.227 Sum_probs=129.6
Q ss_pred CCCcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCC
Q 039656 139 GTIAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSN 218 (660)
Q Consensus 139 ~~~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~ 218 (660)
+.+.|+.+-+|.-. ..=+++++||...|.++.... ...-.....+| ++|.|++++|-+..+-..
T Consensus 101 ~nK~vE~iGfDki~--------akQsn~kkL~~IsLdn~~V~~-------~~~~~~~k~~~-~v~~LdLS~NL~~nw~~v 164 (505)
T KOG3207|consen 101 SNKQVEFIGFDKIA--------AKQSNLKKLREISLDNYRVED-------AGIEEYSKILP-NVRDLDLSRNLFHNWFPV 164 (505)
T ss_pred cCceeEEecHHHHH--------HHhhhHHhhhheeecCccccc-------cchhhhhhhCC-cceeecchhhhHHhHHHH
Confidence 44566666554321 123467889999998776521 00113566677 999999999977544322
Q ss_pred ---C-CCCCceEEeCCCCCCcccc--------CCCeeecCCCCCCc--ccCccccCCCCCcEEEecCCC-CcCCCCCCCC
Q 039656 219 ---F-DPENLIALNLPYSKVEQIW--------KGEKYLNVDGSAIS--HLPSSIADLNKLEDLSFFGCK-ASVLPRVLSG 283 (660)
Q Consensus 219 ---~-~l~~L~~L~L~~n~l~~l~--------~~l~~L~l~~~~l~--~lp~si~~L~~L~~L~l~~~~-~~~lp~~l~~ 283 (660)
. .+++|+.|+++.|++...+ +.++.|.++.++++ .+-.-...+++|+.|++.+|. +..-......
T Consensus 165 ~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i 244 (505)
T KOG3207|consen 165 LKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI 244 (505)
T ss_pred HHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh
Confidence 2 7899999999999886544 35577777777776 333344567888888888884 3333333455
Q ss_pred CCCCCEEEccCCCCCCCC--cccCCCcccCccccccccce--ecchh-----hhcCCCCCeecccCccC
Q 039656 284 LSSLKWMELRDCDLIKIP--QDIGSLSSLEWFVLSGNNFE--HLPAS-----IKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 284 L~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~L~~n~l~--~lp~~-----i~~l~~L~~L~L~~c~~ 343 (660)
+..|+.|+|++|++...+ ..++.++.|+.|+++.+.+. ..|+. ...+++|++|++..|+.
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 778888888888888866 56788888888888888877 34443 35678888888888775
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=3.8e-08 Score=112.86 Aligned_cols=106 Identities=25% Similarity=0.392 Sum_probs=82.0
Q ss_pred CCcEEEecCCCCc-CCCCCCCCCCCCCEEEccCCCCCC-CCcccCCCcccCccccccccce-ecchhhhcCCCCCeeccc
Q 039656 263 KLEDLSFFGCKAS-VLPRVLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSGNNFE-HLPASIKKLSRLTYLNLS 339 (660)
Q Consensus 263 ~L~~L~l~~~~~~-~lp~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~ 339 (660)
.++.|+|++|.+. .+|..+.++++|+.|+|++|.+.+ +|..++.+++|+.|+|++|++. .+|..+++|++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888854 678888888888888888888875 8888888888888888888888 788888888888888888
Q ss_pred CccCCCCCCCCC----cCCcEEecccCcCCccc
Q 039656 340 GCNMLRSLPELP----IRLICLDARNCERLRTL 368 (660)
Q Consensus 340 ~c~~l~~lp~~~----~~L~~L~l~~c~~L~~l 368 (660)
+|+..+.+|..+ .++..+++.+++.+-..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCC
Confidence 888888888653 34456666666555443
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=2.3e-08 Score=117.40 Aligned_cols=149 Identities=27% Similarity=0.352 Sum_probs=112.0
Q ss_pred cCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCC--CCCCCCCC--CCCCceEEeCCCCCCccccC
Q 039656 164 TSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYP--LRTLPSNF--DPENLIALNLPYSKVEQIWK 239 (660)
Q Consensus 164 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~--l~~lP~~~--~l~~L~~L~L~~n~l~~l~~ 239 (660)
.+....|...+.+|.+. .++....+ + +|+.|-+.+|. +..++..| .++.|++|||++|
T Consensus 520 ~~~~~~rr~s~~~~~~~---------~~~~~~~~-~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~------- 581 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE---------HIAGSSEN-P-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN------- 581 (889)
T ss_pred cchhheeEEEEeccchh---------hccCCCCC-C-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC-------
Confidence 34467788888877652 44443333 2 69999999986 77787765 7999999999874
Q ss_pred CCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCC-CCcccCCCcccCccccccc
Q 039656 240 GEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSGN 318 (660)
Q Consensus 240 ~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n 318 (660)
..+.++|++|+.|-+|++|+++++.+..+|..+.+|..|.+|++..+.-.. +|.....|++|++|.+...
T Consensus 582 ---------~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 582 ---------SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ---------CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 345789999999999999999999999999999999999999999987655 5555566999999999865
Q ss_pred cce---ecchhhhcCCCCCeeccc
Q 039656 319 NFE---HLPASIKKLSRLTYLNLS 339 (660)
Q Consensus 319 ~l~---~lp~~i~~l~~L~~L~L~ 339 (660)
... ..-..+.+|.+|+.|...
T Consensus 653 ~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 653 ALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccchhhHHhhhcccchhhheee
Confidence 422 122234455555555443
No 36
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.61 E-value=1.9e-09 Score=111.92 Aligned_cols=74 Identities=20% Similarity=0.447 Sum_probs=64.8
Q ss_pred CeeeecccccCC--HHHHHHHHHHHhcCC------CchhhhhhhccccccchhhhceeeeeecCCCCCC--HHHHHHHhc
Q 039656 1 KLEALGQFLTKS--KLDWKNALKNLTRIS------NPNIYDVLKISYNELKKEEKSIFLDIACFFKGED--KDYMTMIQD 70 (660)
Q Consensus 1 AlkvlG~~L~~k--~~eW~~~l~~l~~~~------~~~I~~~LklSYd~Lp~~lK~cFLy~a~Fp~~~~--~~~l~~iw~ 70 (660)
||+++|++|+.+ ..+|+.+++++.+.. ...+..++.+||+.||+++|+||+|||+||+++. ++.++++|+
T Consensus 198 al~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~ 277 (287)
T PF00931_consen 198 ALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWV 277 (287)
T ss_dssp HHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHH
Confidence 678999999877 899999999876543 3669999999999999999999999999999987 799999999
Q ss_pred CCCC
Q 039656 71 YPDY 74 (660)
Q Consensus 71 a~gf 74 (660)
++||
T Consensus 278 ~e~~ 281 (287)
T PF00931_consen 278 AEGF 281 (287)
T ss_dssp T-HH
T ss_pred HCCC
Confidence 9998
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.54 E-value=2.1e-07 Score=98.76 Aligned_cols=133 Identities=23% Similarity=0.331 Sum_probs=87.3
Q ss_pred cccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCC-C
Q 039656 195 LEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGC-K 273 (660)
Q Consensus 195 l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~-~ 273 (660)
+..+. +++.|++++|.++++| --+.+|++|.+++ |+.++.+|..+ ..+|+.|++++| .
T Consensus 48 ~~~~~-~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsn----------------c~nLtsLP~~L--P~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 48 IEEAR-ASGRLYIKDCDIESLP--VLPNELTEITIEN----------------CNNLTTLPGSI--PEGLEKLTVCHCPE 106 (426)
T ss_pred HHHhc-CCCEEEeCCCCCcccC--CCCCCCcEEEccC----------------CCCcccCCchh--hhhhhheEccCccc
Confidence 55564 7888888888877777 3334566665543 35567777655 358999999999 4
Q ss_pred CcCCCCCCCCCCCCCEEEccCCCCCC---CCcccCCCcccCcccccccc-c--eecchhhhcCCCCCeecccCccCCCCC
Q 039656 274 ASVLPRVLSGLSSLKWMELRDCDLIK---IPQDIGSLSSLEWFVLSGNN-F--EHLPASIKKLSRLTYLNLSGCNMLRSL 347 (660)
Q Consensus 274 ~~~lp~~l~~L~~L~~L~Ls~~~l~~---lp~~l~~l~~L~~L~L~~n~-l--~~lp~~i~~l~~L~~L~L~~c~~l~~l 347 (660)
+..+|. +|+.|++..+.... +|+ +|+.|.+.+++ . ..+|.. -.++|++|.+++|..+...
T Consensus 107 L~sLP~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP 172 (426)
T PRK15386 107 ISGLPE------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILP 172 (426)
T ss_pred cccccc------ccceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCc
Confidence 666775 47777787765433 554 46666665332 1 122211 1168999999999876533
Q ss_pred CCCCcCCcEEecccC
Q 039656 348 PELPIRLICLDARNC 362 (660)
Q Consensus 348 p~~~~~L~~L~l~~c 362 (660)
+.+|.+|+.|.+..+
T Consensus 173 ~~LP~SLk~L~ls~n 187 (426)
T PRK15386 173 EKLPESLQSITLHIE 187 (426)
T ss_pred ccccccCcEEEeccc
Confidence 357889999998764
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.54 E-value=1.6e-07 Score=99.61 Aligned_cols=153 Identities=23% Similarity=0.292 Sum_probs=106.0
Q ss_pred cCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCC-CCCCCCCCCCCCCceEEeCCCC-CCccccCCC
Q 039656 164 TSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGY-PLRTLPSNFDPENLIALNLPYS-KVEQIWKGE 241 (660)
Q Consensus 164 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~-~l~~lP~~~~l~~L~~L~L~~n-~l~~l~~~l 241 (660)
..+++++.|++++|.+. .+| .+|.+|+.|.+++| .++.+|..+ +.+|+.|++++| .+..+|+++
T Consensus 49 ~~~~~l~~L~Is~c~L~---------sLP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIE---------SLP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCc---------ccC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccccc
Confidence 34688999999988663 455 46778999999985 568888765 578999999998 899999999
Q ss_pred eeecCCCCCC---cccCccccCCCCCcEEEecCCC-C--cCCCCCCCCC-CCCCEEEccCCCCCCCCcccCCCcccCccc
Q 039656 242 KYLNVDGSAI---SHLPSSIADLNKLEDLSFFGCK-A--SVLPRVLSGL-SSLKWMELRDCDLIKIPQDIGSLSSLEWFV 314 (660)
Q Consensus 242 ~~L~l~~~~l---~~lp~si~~L~~L~~L~l~~~~-~--~~lp~~l~~L-~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~ 314 (660)
+.|++.++.. ..+|+ +|+.|.+.+++ . ..+|. .| ++|++|++++|....+|..+. .+|+.|+
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcccCccccc--ccCcEEE
Confidence 9999987764 55665 45667665433 1 11221 12 589999999999877776655 6899999
Q ss_pred cccccceecchhhhcC-CCCCeecccCcc
Q 039656 315 LSGNNFEHLPASIKKL-SRLTYLNLSGCN 342 (660)
Q Consensus 315 L~~n~l~~lp~~i~~l-~~L~~L~L~~c~ 342 (660)
++.+....+.-....+ +++ .|++.+|-
T Consensus 184 ls~n~~~sLeI~~~sLP~nl-~L~f~n~l 211 (426)
T PRK15386 184 LHIEQKTTWNISFEGFPDGL-DIDLQNSV 211 (426)
T ss_pred ecccccccccCccccccccc-Eechhhhc
Confidence 8876433211111111 344 66666663
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=1.8e-07 Score=107.39 Aligned_cols=109 Identities=24% Similarity=0.434 Sum_probs=95.2
Q ss_pred CeeecCCCCCCc-ccCccccCCCCCcEEEecCCCCc-CCCCCCCCCCCCCEEEccCCCCCC-CCcccCCCcccCcccccc
Q 039656 241 EKYLNVDGSAIS-HLPSSIADLNKLEDLSFFGCKAS-VLPRVLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSG 317 (660)
Q Consensus 241 l~~L~l~~~~l~-~lp~si~~L~~L~~L~l~~~~~~-~lp~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~ 317 (660)
++.|++++|.+. .+|.+++.|++|+.|+|++|.+. .+|..++.+++|+.|+|++|++.+ +|+.++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 456778888887 78999999999999999999975 789889999999999999999986 899999999999999999
Q ss_pred ccce-ecchhhhcC-CCCCeecccCccCCCCCCC
Q 039656 318 NNFE-HLPASIKKL-SRLTYLNLSGCNMLRSLPE 349 (660)
Q Consensus 318 n~l~-~lp~~i~~l-~~L~~L~L~~c~~l~~lp~ 349 (660)
|+++ .+|..++.+ .++..+++.+|..+...|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 9999 899888764 5778899999887766654
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=4.1e-09 Score=115.18 Aligned_cols=103 Identities=24% Similarity=0.213 Sum_probs=61.8
Q ss_pred cCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCcccccc
Q 039656 238 WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSG 317 (660)
Q Consensus 238 ~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~ 317 (660)
|..+..-+.+||+++.+..++.-++.|+.|+|++|+..... .+..++.|++|||+.|.+..+|.--..-..|+.|.+++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 44455555666666666666666666666666666665554 36666666666666666666553211112266666666
Q ss_pred ccceecchhhhcCCCCCeecccCcc
Q 039656 318 NNFEHLPASIKKLSRLTYLNLSGCN 342 (660)
Q Consensus 318 n~l~~lp~~i~~l~~L~~L~L~~c~ 342 (660)
|.++++- .+.+|.+|+.|++++|-
T Consensus 242 N~l~tL~-gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSYNL 265 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhHhh
Confidence 6666554 45666666666666653
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=5.5e-07 Score=70.09 Aligned_cols=57 Identities=35% Similarity=0.591 Sum_probs=33.8
Q ss_pred CCCEEEccCCCCCCCCc-ccCCCcccCccccccccceecch-hhhcCCCCCeecccCcc
Q 039656 286 SLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSGCN 342 (660)
Q Consensus 286 ~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 342 (660)
+|++|++++|++..+|+ .+..+++|++|++++|+++.+|. .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666665543 45556666666666666665553 34666666666666654
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.24 E-value=9.4e-08 Score=97.06 Aligned_cols=123 Identities=24% Similarity=0.301 Sum_probs=82.6
Q ss_pred CCCceEEeCCCCCCccc-----------cCCCeeecCCCCCCc-----ccCccccCCCCCcEEEecCCCCcC-----CCC
Q 039656 221 PENLIALNLPYSKVEQI-----------WKGEKYLNVDGSAIS-----HLPSSIADLNKLEDLSFFGCKASV-----LPR 279 (660)
Q Consensus 221 l~~L~~L~L~~n~l~~l-----------~~~l~~L~l~~~~l~-----~lp~si~~L~~L~~L~l~~~~~~~-----lp~ 279 (660)
..+|+++...+|++..- .+.++.+.+..|.|. -+-.++..+++|++|||.+|.++. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 44555555555555431 234444444444443 334567888999999999998654 445
Q ss_pred CCCCCCCCCEEEccCCCCCC-----CCccc-CCCcccCccccccccce-----ecchhhhcCCCCCeecccCccC
Q 039656 280 VLSGLSSLKWMELRDCDLIK-----IPQDI-GSLSSLEWFVLSGNNFE-----HLPASIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 280 ~l~~L~~L~~L~Ls~~~l~~-----lp~~l-~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~~ 343 (660)
.++.+++|+.|++++|.+.. +-..+ ...++|+.|.+.+|.++ .+-..+...+.|+.|+|++|..
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 57778899999999998875 22222 23678999999999887 3444566788899999998874
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=2.3e-07 Score=101.53 Aligned_cols=81 Identities=22% Similarity=0.162 Sum_probs=41.4
Q ss_pred CceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCC
Q 039656 201 ELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRV 280 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~ 280 (660)
+|++|++++|.+..+...-.+..|+.|++.+|. |..++. +..+++|+.+++++|.+..+...
T Consensus 119 ~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~-----------------i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~ 180 (414)
T KOG0531|consen 119 NLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL-----------------ISDISG-LESLKSLKLLDLSYNRIVDIEND 180 (414)
T ss_pred cchheeccccccccccchhhccchhhheeccCc-----------------chhccC-CccchhhhcccCCcchhhhhhhh
Confidence 555555555555544433344445555555544 444433 33455566666666655555442
Q ss_pred -CCCCCCCCEEEccCCCCCC
Q 039656 281 -LSGLSSLKWMELRDCDLIK 299 (660)
Q Consensus 281 -l~~L~~L~~L~Ls~~~l~~ 299 (660)
+..+.+|+.+.+.+|.+..
T Consensus 181 ~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 181 ELSELISLEELDLGGNSIRE 200 (414)
T ss_pred hhhhccchHHHhccCCchhc
Confidence 3555555555555555544
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=9.7e-07 Score=68.70 Aligned_cols=57 Identities=32% Similarity=0.527 Sum_probs=29.5
Q ss_pred CCcEEEecCCCCcCCCC-CCCCCCCCCEEEccCCCCCCCC-cccCCCcccCcccccccc
Q 039656 263 KLEDLSFFGCKASVLPR-VLSGLSSLKWMELRDCDLIKIP-QDIGSLSSLEWFVLSGNN 319 (660)
Q Consensus 263 ~L~~L~l~~~~~~~lp~-~l~~L~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~ 319 (660)
+|++|++++|++..+|. .+.++++|++|++++|.+..+| ..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554442 3445555555555555555533 245555555555555554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.14 E-value=3.4e-07 Score=100.21 Aligned_cols=147 Identities=25% Similarity=0.378 Sum_probs=103.1
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccCCCee
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWKGEKY 243 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~~l~~ 243 (660)
.+..++.+.+..|.+. .+-..+..+. +|..|++.+|.++.+...+ .+.+|++|++++|.|+.+
T Consensus 70 ~l~~l~~l~l~~n~i~---------~~~~~l~~~~-~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i------ 133 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA---------KILNHLSKLK-SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL------ 133 (414)
T ss_pred HhHhHHhhccchhhhh---------hhhccccccc-ceeeeeccccchhhcccchhhhhcchheeccccccccc------
Confidence 3445555555555542 1222344444 7888888888887777634 678888888887777654
Q ss_pred ecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcc-cCCCcccCcccccccccee
Q 039656 244 LNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFEH 322 (660)
Q Consensus 244 L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~ 322 (660)
. .+..++.|+.|++.+|.+..+.. +..+++|+.+++++|.+..+... +..+.+|+.+.+.+|.+..
T Consensus 134 -----------~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 134 -----------E-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred -----------c-chhhccchhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 2 26677789999999999998876 77799999999999999997764 5788999999999998775
Q ss_pred cchhhhcCCCCCeecccCc
Q 039656 323 LPASIKKLSRLTYLNLSGC 341 (660)
Q Consensus 323 lp~~i~~l~~L~~L~L~~c 341 (660)
+. .+..+..+..+++..|
T Consensus 201 i~-~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 201 IE-GLDLLKKLVLLSLLDN 218 (414)
T ss_pred cc-chHHHHHHHHhhcccc
Confidence 54 2333333333344443
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.07 E-value=3.1e-07 Score=93.35 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=60.2
Q ss_pred cccCCcCceEEEeeCCCCC-CCCCCC-----CCCCceEEeCCCCCCccc--------------------cCCCeeecCCC
Q 039656 195 LEYLPEELRYLHWYGYPLR-TLPSNF-----DPENLIALNLPYSKVEQI--------------------WKGEKYLNVDG 248 (660)
Q Consensus 195 l~~l~~~Lr~L~l~~~~l~-~lP~~~-----~l~~L~~L~L~~n~l~~l--------------------~~~l~~L~l~~ 248 (660)
+...| +|++|+|++|-++ .-+..+ ....|++|.|.+|.+... ++.++.+..+.
T Consensus 88 L~~~~-~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCP-KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCC-ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 33444 6777777777663 222222 456677777777765321 23344444444
Q ss_pred CCCcccCc-----cccCCCCCcEEEecCCCCcC-----CCCCCCCCCCCCEEEccCCCCCC-----CCcccCCCcccCcc
Q 039656 249 SAISHLPS-----SIADLNKLEDLSFFGCKASV-----LPRVLSGLSSLKWMELRDCDLIK-----IPQDIGSLSSLEWF 313 (660)
Q Consensus 249 ~~l~~lp~-----si~~L~~L~~L~l~~~~~~~-----lp~~l~~L~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L 313 (660)
|++..-+. .+...+.|+.+.+..|.+.. +-..+..+++|+.|||++|-++. +...+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 44443221 23334445555555444321 11223444555555555554432 33334444555555
Q ss_pred ccccccce
Q 039656 314 VLSGNNFE 321 (660)
Q Consensus 314 ~L~~n~l~ 321 (660)
+++.|.++
T Consensus 247 ~l~dcll~ 254 (382)
T KOG1909|consen 247 NLGDCLLE 254 (382)
T ss_pred cccccccc
Confidence 55544444
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=1.6e-07 Score=102.98 Aligned_cols=119 Identities=22% Similarity=0.252 Sum_probs=66.2
Q ss_pred CceEEeCCCCCCccc------cCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCC
Q 039656 223 NLIALNLPYSKVEQI------WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCD 296 (660)
Q Consensus 223 ~L~~L~L~~n~l~~l------~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~ 296 (660)
.|...+.++|.+..+ .+.++.|+++.|.++.+. .+..|++|+.|||++|.+..+|.--..-..|+.|+|++|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH
Confidence 344455555554422 334455556666655554 4666666666677666666665421112236666666666
Q ss_pred CCCCCcccCCCcccCccccccccceecc--hhhhcCCCCCeecccCccC
Q 039656 297 LIKIPQDIGSLSSLEWFVLSGNNFEHLP--ASIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 297 l~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~ 343 (660)
++++- ++.+|.+|+.||++.|-+.... .-+..|..|+.|+|.+|+.
T Consensus 244 l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 244 LTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66542 4556666666666666554221 1245566666666666653
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=2.9e-07 Score=81.59 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=38.6
Q ss_pred CCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchh
Q 039656 263 KLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPAS 326 (660)
Q Consensus 263 ~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 326 (660)
.+++|++++|.+..+|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+..+|.+..+|..
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 4555666666666666666666666666666666666555555566666666666665555544
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=1.5e-05 Score=57.34 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=14.8
Q ss_pred CCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCC
Q 039656 263 KLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLI 298 (660)
Q Consensus 263 ~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~ 298 (660)
+|++|++++|++..+|+.+.+|++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444444443444444444444444443
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.4e-05 Score=56.35 Aligned_cols=40 Identities=23% Similarity=0.465 Sum_probs=25.5
Q ss_pred CCCCEEEccCCCCCCCCcccCCCcccCccccccccceecc
Q 039656 285 SSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLP 324 (660)
Q Consensus 285 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 324 (660)
++|++|++++|++.++|+.+++|++|+.|++++|+++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3566777777777766666667777777777777666554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.70 E-value=3e-06 Score=75.30 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=72.4
Q ss_pred ccCCCCCcEEEecCCCCcCCCCCCCC-CCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCee
Q 039656 258 IADLNKLEDLSFFGCKASVLPRVLSG-LSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYL 336 (660)
Q Consensus 258 i~~L~~L~~L~l~~~~~~~lp~~l~~-L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L 336 (660)
+.....|...+|++|.+..+|+.+.. ++.++.|+|++|.++++|..+..++.|+.|+++.|.+...|.-+..|.+|-.|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 44556677778999998888877764 56899999999999999999999999999999999999999888888888888
Q ss_pred cccCccC
Q 039656 337 NLSGCNM 343 (660)
Q Consensus 337 ~L~~c~~ 343 (660)
+..+|..
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 8877653
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.58 E-value=7.1e-05 Score=71.05 Aligned_cols=94 Identities=22% Similarity=0.342 Sum_probs=58.3
Q ss_pred CCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCC-CCCCCEEEccCCCCCCCC--cccCCCcccCcccccccccee
Q 039656 246 VDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSG-LSSLKWMELRDCDLIKIP--QDIGSLSSLEWFVLSGNNFEH 322 (660)
Q Consensus 246 l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~-L~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~ 322 (660)
++.|.+..++. +..++.|.+|.+.+|.+..+.+.+.. +++|+.|.|.+|++.++- ..+..++.|++|.+-+|.++.
T Consensus 49 LtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 49 LTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred ccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 33333344433 55677777777777777776655554 566777777777776632 235566677777777776664
Q ss_pred cch----hhhcCCCCCeecccC
Q 039656 323 LPA----SIKKLSRLTYLNLSG 340 (660)
Q Consensus 323 lp~----~i~~l~~L~~L~L~~ 340 (660)
.+. -+..+++|+.||...
T Consensus 128 k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 128 KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccCceeEEEEecCcceEeehhh
Confidence 432 245667777777654
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=3.3e-05 Score=77.14 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=49.5
Q ss_pred CCCCCEEEccCCCCCC--CCcccCCCcccCccccccccceecc--hhhhcCCCCCeecccCccCCCCCCC
Q 039656 284 LSSLKWMELRDCDLIK--IPQDIGSLSSLEWFVLSGNNFEHLP--ASIKKLSRLTYLNLSGCNMLRSLPE 349 (660)
Q Consensus 284 L~~L~~L~Ls~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~l~~lp~ 349 (660)
++++..+-+..|.+.. -......++.+-.|+|+.|++..+. ..+..+++|+.|.+.+++....+..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 5677777788887665 2334556777888999999988654 3578899999999999988776653
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=6.8e-05 Score=86.31 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=56.5
Q ss_pred CCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCC--CCCCCCCCCCEEEccCCCCCCCCc-------ccCCCccc
Q 039656 240 GEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLP--RVLSGLSSLKWMELRDCDLIKIPQ-------DIGSLSSL 310 (660)
Q Consensus 240 ~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp--~~l~~L~~L~~L~Ls~~~l~~lp~-------~l~~l~~L 310 (660)
++..||+++++++.+ ..|++|++|++|.+.+-.+..-. ..+.+|++|+.||+|.......+. .-..|++|
T Consensus 174 NL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeL 252 (699)
T KOG3665|consen 174 NLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPEL 252 (699)
T ss_pred ccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccc
Confidence 334444444444444 55778888888877776544322 236678888888887765544221 12236777
Q ss_pred Cccccccccce--ecchhhhcCCCCCeeccc
Q 039656 311 EWFVLSGNNFE--HLPASIKKLSRLTYLNLS 339 (660)
Q Consensus 311 ~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~ 339 (660)
+.||.+++.+. .+-..+..-++|+.+.+-
T Consensus 253 rfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 253 RFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 77777777666 222233444555555443
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=3.6e-05 Score=76.91 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=32.6
Q ss_pred CCcccCccccccc-cce-ecchhhhcCCCCCeecccCccCCCCCCCC------CcCCcEEecccCc
Q 039656 306 SLSSLEWFVLSGN-NFE-HLPASIKKLSRLTYLNLSGCNMLRSLPEL------PIRLICLDARNCE 363 (660)
Q Consensus 306 ~l~~L~~L~L~~n-~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~------~~~L~~L~l~~c~ 363 (660)
.+++|..|||+.| .++ ..-..+.+++.|++|.++.|..+ +|+. .|+|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 4566777777743 343 33344566777777777776543 2321 4667777777663
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.09 E-value=6.9e-05 Score=86.27 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=90.3
Q ss_pred CceEEEeeCCCC--CCCCCCC--CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcC
Q 039656 201 ELRYLHWYGYPL--RTLPSNF--DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASV 276 (660)
Q Consensus 201 ~Lr~L~l~~~~l--~~lP~~~--~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~ 276 (660)
+|++|+++|... ...|..+ .++.|+.|.+.+-.+.. .++-.-..++++|..||++++++..
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---------------~dF~~lc~sFpNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN---------------DDFSQLCASFPNLRSLDISGTNISN 187 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc---------------hhHHHHhhccCccceeecCCCCccC
Confidence 577777777532 2333333 46777777666543321 0111223567888889999988887
Q ss_pred CCCCCCCCCCCCEEEccCCCCCCCC--cccCCCcccCccccccccceecch-------hhhcCCCCCeecccCccCCCCC
Q 039656 277 LPRVLSGLSSLKWMELRDCDLIKIP--QDIGSLSSLEWFVLSGNNFEHLPA-------SIKKLSRLTYLNLSGCNMLRSL 347 (660)
Q Consensus 277 lp~~l~~L~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~-------~i~~l~~L~~L~L~~c~~l~~l 347 (660)
+ ..+++|++|+.|.+.+-.+..-. ..+-+|++|+.||+|.......+. .-..||+|+.||.++....+.+
T Consensus 188 l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 188 L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 7 55888888888888877666522 356778889999998655443331 2235788888888876544332
Q ss_pred CC----CCcCCcEEecccCcC
Q 039656 348 PE----LPIRLICLDARNCER 364 (660)
Q Consensus 348 p~----~~~~L~~L~l~~c~~ 364 (660)
-+ .-++|+.+.+.+|..
T Consensus 267 le~ll~sH~~L~~i~~~~~~~ 287 (699)
T KOG3665|consen 267 LEELLNSHPNLQQIAALDCLA 287 (699)
T ss_pred HHHHHHhCccHhhhhhhhhhc
Confidence 21 134455544444433
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.00011 Score=73.62 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=94.3
Q ss_pred cccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCC--CCCCCCC-CCCCceEEeCCCCCCcccc
Q 039656 162 TFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPL--RTLPSNF-DPENLIALNLPYSKVEQIW 238 (660)
Q Consensus 162 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l--~~lP~~~-~l~~L~~L~L~~n~l~~l~ 238 (660)
...+|++|++|+++.|.+.. ...++| ..+ .+|++|-+.|..+ +...+.. +++.+++|+|+.|++.++.
T Consensus 92 ile~lP~l~~LNls~N~L~s-----~I~~lp---~p~-~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n 162 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSS-----DIKSLP---LPL-KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLN 162 (418)
T ss_pred HHhcCccceEeeccCCcCCC-----ccccCc---ccc-cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhc
Confidence 46789999999999887642 112333 112 3899999988865 4555444 7888889999888765431
Q ss_pred ----------CCCeeecCCCCCCccc---CccccCCCCCcEEEecCCCCcCC--CCCCCCCCCCCEEEccCCCCCCC--C
Q 039656 239 ----------KGEKYLNVDGSAISHL---PSSIADLNKLEDLSFFGCKASVL--PRVLSGLSSLKWMELRDCDLIKI--P 301 (660)
Q Consensus 239 ----------~~l~~L~l~~~~l~~l---p~si~~L~~L~~L~l~~~~~~~l--p~~l~~L~~L~~L~Ls~~~l~~l--p 301 (660)
+.++.|....+..... -.--..++++..+-+..|.+... -.....++.+-.|+|+.+++... -
T Consensus 163 ~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasv 242 (418)
T KOG2982|consen 163 LDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASV 242 (418)
T ss_pred cccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHH
Confidence 1222222222211100 00012245667777777765443 23455678888999999988773 3
Q ss_pred cccCCCcccCccccccccce
Q 039656 302 QDIGSLSSLEWFVLSGNNFE 321 (660)
Q Consensus 302 ~~l~~l~~L~~L~L~~n~l~ 321 (660)
+.+..+++|..|.++++.+.
T Consensus 243 D~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 243 DALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred HHHcCCchhheeeccCCccc
Confidence 46778889999988888765
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.03 E-value=0.00091 Score=63.70 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=68.3
Q ss_pred ccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccC-CCCCcEEEecCCCC
Q 039656 196 EYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIAD-LNKLEDLSFFGCKA 274 (660)
Q Consensus 196 ~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~-L~~L~~L~l~~~~~ 274 (660)
+...++...+|+++|.+..++.--.++.|.+|.+.+|+|+ .|.+.+.. +++|+.|.+.+|.+
T Consensus 38 g~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-----------------~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 38 GATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-----------------RIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccceecccccchhhcccCCCccccceEEecCCcce-----------------eeccchhhhccccceEEecCcch
Confidence 3333456666777776655554335566666666655554 44333433 46788888888886
Q ss_pred cCCCC--CCCCCCCCCEEEccCCCCCCCCc----ccCCCcccCcccccccc
Q 039656 275 SVLPR--VLSGLSSLKWMELRDCDLIKIPQ----DIGSLSSLEWFVLSGNN 319 (660)
Q Consensus 275 ~~lp~--~l~~L~~L~~L~Ls~~~l~~lp~----~l~~l~~L~~L~L~~n~ 319 (660)
.++-+ .+..++.|++|.+-+|.....+. -+..+++|+.||...-.
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 65432 26677888888888888776332 36678889999877543
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.00065 Score=67.23 Aligned_cols=104 Identities=27% Similarity=0.336 Sum_probs=62.5
Q ss_pred CCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCC--CCCC-CCcccCCCcccCccccccccce---ecchhhhcCCCC
Q 039656 260 DLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDC--DLIK-IPQDIGSLSSLEWFVLSGNNFE---HLPASIKKLSRL 333 (660)
Q Consensus 260 ~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~--~l~~-lp~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l~~L 333 (660)
.+.+|+.|++.++.++++-. +..|++|+.|.++.| +... ++.-...+++|++|++++|++. +++ .+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcch
Confidence 34556666666666555443 556677777777777 3333 4444444577777777777766 333 35667777
Q ss_pred CeecccCccCCCCCC-------CCCcCCcEEecccCcCCc
Q 039656 334 TYLNLSGCNMLRSLP-------ELPIRLICLDARNCERLR 366 (660)
Q Consensus 334 ~~L~L~~c~~l~~lp-------~~~~~L~~L~l~~c~~L~ 366 (660)
..|++.+|...+ +- .++++|++|+-.++..-+
T Consensus 119 ~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 119 KSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred hhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCcc
Confidence 788888776554 21 235666766666554433
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00023 Score=70.72 Aligned_cols=86 Identities=19% Similarity=0.236 Sum_probs=66.4
Q ss_pred CCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecch--hhhcCCCCCeecc
Q 039656 261 LNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPA--SIKKLSRLTYLNL 338 (660)
Q Consensus 261 L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L 338 (660)
|.+.+.|+.-||.+..+.- ..+|+.|+.|.|+-|+++.+. .+..+++|++|+|..|.|..+-+ -+.++++|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 4566677777777766543 557888888888888888764 46788899999999998886653 3688999999999
Q ss_pred cCccCCCCCC
Q 039656 339 SGCNMLRSLP 348 (660)
Q Consensus 339 ~~c~~l~~lp 348 (660)
..|+..+.-+
T Consensus 96 ~ENPCc~~ag 105 (388)
T KOG2123|consen 96 DENPCCGEAG 105 (388)
T ss_pred ccCCcccccc
Confidence 9998776654
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=2.9e-05 Score=77.55 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=91.8
Q ss_pred CccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCC-CCCCCC-CCCCceEEeCCCC-CCccc-------
Q 039656 168 NLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLR-TLPSNF-DPENLIALNLPYS-KVEQI------- 237 (660)
Q Consensus 168 ~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~-~lP~~~-~l~~L~~L~L~~n-~l~~l------- 237 (660)
.|++|+|++..++. ..+..-+.... +|+.|.+.|+.+. .+-..+ .-.+|+.|+++.+ .++..
T Consensus 186 Rlq~lDLS~s~it~-------stl~~iLs~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV-------STLHGILSQCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhHHhhcchhheeH-------HHHHHHHHHHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH
Confidence 47777777665531 12222233333 6677777776653 222222 4466777777663 23321
Q ss_pred -cCCCeeecCCCCCCcc--cCccccC-CCCCcEEEecCCCCc----CCCCCCCCCCCCCEEEccCCCCCC--CCcccCCC
Q 039656 238 -WKGEKYLNVDGSAISH--LPSSIAD-LNKLEDLSFFGCKAS----VLPRVLSGLSSLKWMELRDCDLIK--IPQDIGSL 307 (660)
Q Consensus 238 -~~~l~~L~l~~~~l~~--lp~si~~-L~~L~~L~l~~~~~~----~lp~~l~~L~~L~~L~Ls~~~l~~--lp~~l~~l 307 (660)
...+..|+++.+.+.. +...+.. -.+|..|+++||... .+..-....++|.+|||++|.... .-..+..+
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence 1223334444333321 1101111 146777777777521 122223467899999999886543 33456778
Q ss_pred cccCccccccccce--ecchhhhcCCCCCeecccCccC
Q 039656 308 SSLEWFVLSGNNFE--HLPASIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 308 ~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~ 343 (660)
+.|++|.++.|..- +.--.+...+.|.+|++.+|-.
T Consensus 338 ~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred chheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 89999999866432 1112357788999999988753
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.004 Score=61.73 Aligned_cols=89 Identities=26% Similarity=0.321 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccc--cce-ecchhhhcCCCCCeecccCccCC--CCCCCC-
Q 039656 277 LPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGN--NFE-HLPASIKKLSRLTYLNLSGCNML--RSLPEL- 350 (660)
Q Consensus 277 lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n--~l~-~lp~~i~~l~~L~~L~L~~c~~l--~~lp~~- 350 (660)
+....-.+..|+.|.+.++.++.+- .+..|++|+.|.++.| ++. .++.....+++|++|++++|+.- .+++.+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 4444556677888888888877642 3456889999999999 554 66666677799999999998753 444444
Q ss_pred -CcCCcEEecccCcCCc
Q 039656 351 -PIRLICLDARNCERLR 366 (660)
Q Consensus 351 -~~~L~~L~l~~c~~L~ 366 (660)
+.+|..|++.+|+...
T Consensus 114 ~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhcchhhhhcccCCccc
Confidence 5677788888776544
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.66 E-value=0.0031 Score=62.69 Aligned_cols=84 Identities=20% Similarity=0.146 Sum_probs=42.8
Q ss_pred CCCCCcEEEecCCCCcCCCCC-----CCCCCCCCEEEccCCCCCC------CCcccCCCcccCccccccccceec-----
Q 039656 260 DLNKLEDLSFFGCKASVLPRV-----LSGLSSLKWMELRDCDLIK------IPQDIGSLSSLEWFVLSGNNFEHL----- 323 (660)
Q Consensus 260 ~L~~L~~L~l~~~~~~~lp~~-----l~~L~~L~~L~Ls~~~l~~------lp~~l~~l~~L~~L~L~~n~l~~l----- 323 (660)
+-+.|++.....|++...|.. +..-.+|+.+.+..|.+.. +-..+..+.+|+.|||..|-++..
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 345566666666654443321 1122456666666665542 111233456666666666666522
Q ss_pred chhhhcCCCCCeecccCccC
Q 039656 324 PASIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 324 p~~i~~l~~L~~L~L~~c~~ 343 (660)
...+...+.|+.|.+.+|-.
T Consensus 235 a~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHhcccchhhhccccchhh
Confidence 22234455566666666644
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.0013 Score=65.36 Aligned_cols=79 Identities=25% Similarity=0.204 Sum_probs=57.2
Q ss_pred ccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCc--ccCCCcccCccccccccce-ecc-----hhhhc
Q 039656 258 IADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQ--DIGSLSSLEWFVLSGNNFE-HLP-----ASIKK 329 (660)
Q Consensus 258 i~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~--~l~~l~~L~~L~L~~n~l~-~lp-----~~i~~ 329 (660)
..+++.|++|.|+-|++..+.+ +..+++|++|+|+.|.|..+.+ .+.++++|+.|.|..|.-. .-+ ..+.-
T Consensus 37 c~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 3567788888888888877765 7778888888888888777543 4678888888888877544 222 13566
Q ss_pred CCCCCeec
Q 039656 330 LSRLTYLN 337 (660)
Q Consensus 330 l~~L~~L~ 337 (660)
|++|++|+
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 78888775
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.33 E-value=0.0059 Score=60.73 Aligned_cols=180 Identities=15% Similarity=0.055 Sum_probs=102.4
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCC----CCCCC--------CCCCCceEEeCCCC
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLR----TLPSN--------FDPENLIALNLPYS 232 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~----~lP~~--------~~l~~L~~L~L~~n 232 (660)
.|..+..++|++|.+... ....+...+...- +|+..+++.--.+ .+|++ ..+++|+..+|++|
T Consensus 28 ~~d~~~evdLSGNtigtE----A~e~l~~~ia~~~-~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 28 MMDELVEVDLSGNTIGTE----AMEELCNVIANVR-NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred hhcceeEEeccCCcccHH----HHHHHHHHHhhhc-ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 356666677777766310 1111222222222 5666555543211 22222 25567777777777
Q ss_pred CCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCC--------------CCCCCCCCCEEEccCCCCC
Q 039656 233 KVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPR--------------VLSGLSSLKWMELRDCDLI 298 (660)
Q Consensus 233 ~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~--------------~l~~L~~L~~L~Ls~~~l~ 298 (660)
.+..- ....+-+-|..-+.|..|.+++|.++.+.. ...+-|.|+......|++.
T Consensus 103 Afg~~------------~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 103 AFGSE------------FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred ccCcc------------cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 65311 111222346677788888888888765432 1334577888888888877
Q ss_pred CCCc-----ccCCCcccCcccccccccee--c----chhhhcCCCCCeecccCccCCCC--------CCCCCcCCcEEec
Q 039656 299 KIPQ-----DIGSLSSLEWFVLSGNNFEH--L----PASIKKLSRLTYLNLSGCNMLRS--------LPELPIRLICLDA 359 (660)
Q Consensus 299 ~lp~-----~l~~l~~L~~L~L~~n~l~~--l----p~~i~~l~~L~~L~L~~c~~l~~--------lp~~~~~L~~L~l 359 (660)
.-|. .+..-.+|+.+.+..|.|.. + -..+..+.+|+.|+|.+|..... +|.++ .|+.|.+
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~l 249 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRL 249 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccc
Confidence 6443 23333578888888887761 1 12345678899999998865432 33333 3677777
Q ss_pred ccC
Q 039656 360 RNC 362 (660)
Q Consensus 360 ~~c 362 (660)
.+|
T Consensus 250 nDC 252 (388)
T COG5238 250 NDC 252 (388)
T ss_pred cch
Confidence 666
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.24 E-value=0.016 Score=34.79 Aligned_cols=18 Identities=50% Similarity=0.881 Sum_probs=8.7
Q ss_pred cCccccccccceecchhh
Q 039656 310 LEWFVLSGNNFEHLPASI 327 (660)
Q Consensus 310 L~~L~L~~n~l~~lp~~i 327 (660)
|++|+|++|+++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555555554443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.01 E-value=0.017 Score=34.70 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=9.5
Q ss_pred CCEEEccCCCCCCCCcccC
Q 039656 287 LKWMELRDCDLIKIPQDIG 305 (660)
Q Consensus 287 L~~L~Ls~~~l~~lp~~l~ 305 (660)
|++|+|++|+++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.67 E-value=0.0016 Score=63.29 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=76.4
Q ss_pred cccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCee
Q 039656 257 SIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYL 336 (660)
Q Consensus 257 si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L 336 (660)
.|.....-+.||++.|++..+-..++.++.|..|+++.|.+.-+|.+++.+..++.+++..|+.+..|.+.+.+++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 46667778888888888877777788888889999998888889999999999999999999999999999999999999
Q ss_pred cccCccCCCC
Q 039656 337 NLSGCNMLRS 346 (660)
Q Consensus 337 ~L~~c~~l~~ 346 (660)
++.++.....
T Consensus 117 e~k~~~~~~~ 126 (326)
T KOG0473|consen 117 EQKKTEFFRK 126 (326)
T ss_pred hhccCcchHH
Confidence 9888775443
No 69
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=92.10 E-value=0.1 Score=30.37 Aligned_cols=20 Identities=60% Similarity=1.253 Sum_probs=17.8
Q ss_pred CceEEeCCCCCCccccCCCe
Q 039656 223 NLIALNLPYSKVEQIWKGEK 242 (660)
Q Consensus 223 ~L~~L~L~~n~l~~l~~~l~ 242 (660)
+|+.|+|++++++++|++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998864
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.28 E-value=1.1 Score=39.86 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=27.1
Q ss_pred cCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC--CCCCceEEeCC
Q 039656 158 LACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF--DPENLIALNLP 230 (660)
Q Consensus 158 l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~--~l~~L~~L~L~ 230 (660)
+...+|.++++|+.+.+.. .+ ..++.....-..+|+.+.+.++ +..++... ...+|+.+.+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~---------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TI---------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T-----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred ECHHHHhCCCCCCEEEECC-Ce---------eEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 4556778888888877743 22 2344433333335666666553 55555433 44455555553
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.97 E-value=0.14 Score=28.57 Aligned_cols=12 Identities=25% Similarity=0.446 Sum_probs=3.8
Q ss_pred CCEEEccCCCCC
Q 039656 287 LKWMELRDCDLI 298 (660)
Q Consensus 287 L~~L~Ls~~~l~ 298 (660)
|+.|+|++|++.
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444433
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.47 E-value=0.24 Score=27.68 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=6.8
Q ss_pred CCcEEEecCCCCcCCC
Q 039656 263 KLEDLSFFGCKASVLP 278 (660)
Q Consensus 263 ~L~~L~l~~~~~~~lp 278 (660)
+|+.|++++|++..+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666554443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.95 E-value=0.018 Score=56.12 Aligned_cols=79 Identities=11% Similarity=0.068 Sum_probs=55.0
Q ss_pred eecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccce
Q 039656 243 YLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFE 321 (660)
Q Consensus 243 ~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~ 321 (660)
.|+++.|++..+-..+..++.|..|+++.|.+..+|..++.+..++.+++..|+.+..|.+++.++.++++++.+|.+.
T Consensus 46 vld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 46 VLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred eehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 3334444444444455666777777777777777777777777777777777777777777777888888777777654
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.93 E-value=2 Score=38.05 Aligned_cols=78 Identities=15% Similarity=0.271 Sum_probs=32.2
Q ss_pred ccCCCCCcEEEecCCCCcCCCC-CCCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccceecchh-hhcCCCCC
Q 039656 258 IADLNKLEDLSFFGCKASVLPR-VLSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPAS-IKKLSRLT 334 (660)
Q Consensus 258 i~~L~~L~~L~l~~~~~~~lp~-~l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~ 334 (660)
+..+++|+.+.+.++ +..++. .+.++++|+.+.+.+ .+..++. .+..+++|+.+.+..+ +..++.. +.+. +|+
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 444555566655543 333332 244454666666654 3333332 3444666666666543 4444433 3444 666
Q ss_pred eeccc
Q 039656 335 YLNLS 339 (660)
Q Consensus 335 ~L~L~ 339 (660)
.+.+.
T Consensus 107 ~i~~~ 111 (129)
T PF13306_consen 107 EINIP 111 (129)
T ss_dssp EEE-T
T ss_pred EEEEC
Confidence 66554
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.36 E-value=0.56 Score=29.17 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=9.8
Q ss_pred cccCccccccccceecchh
Q 039656 308 SSLEWFVLSGNNFEHLPAS 326 (660)
Q Consensus 308 ~~L~~L~L~~n~l~~lp~~ 326 (660)
++|+.|+|++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.36 E-value=0.56 Score=29.17 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=9.8
Q ss_pred cccCccccccccceecchh
Q 039656 308 SSLEWFVLSGNNFEHLPAS 326 (660)
Q Consensus 308 ~~L~~L~L~~n~l~~lp~~ 326 (660)
++|+.|+|++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.92 E-value=0.82 Score=28.40 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=14.4
Q ss_pred CCCCCEEEccCCCCCCCCcc
Q 039656 284 LSSLKWMELRDCDLIKIPQD 303 (660)
Q Consensus 284 L~~L~~L~Ls~~~l~~lp~~ 303 (660)
|++|+.|+|++|.+..+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677777777777777764
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.92 E-value=0.82 Score=28.40 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=14.4
Q ss_pred CCCCCEEEccCCCCCCCCcc
Q 039656 284 LSSLKWMELRDCDLIKIPQD 303 (660)
Q Consensus 284 L~~L~~L~Ls~~~l~~lp~~ 303 (660)
|++|+.|+|++|.+..+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677777777777777764
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.73 E-value=0.016 Score=64.16 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=11.0
Q ss_pred cccCCCCccEEEEecCCCC
Q 039656 162 TFTSMSNLRLLKFYMPNRD 180 (660)
Q Consensus 162 ~f~~l~~Lr~L~l~~n~~~ 180 (660)
++..+..|..|++.+|.+.
T Consensus 110 ~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HhcccccHhHhhcccCCCc
Confidence 4455556666666666553
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=80.31 E-value=0.26 Score=54.67 Aligned_cols=87 Identities=26% Similarity=0.373 Sum_probs=47.7
Q ss_pred ccCCCCCcEEEecCC-CC-cCC----CCCCCCCCCCCEEEccCCC-CCC--CCcccCCCcccCcccccccc-ce--ecch
Q 039656 258 IADLNKLEDLSFFGC-KA-SVL----PRVLSGLSSLKWMELRDCD-LIK--IPQDIGSLSSLEWFVLSGNN-FE--HLPA 325 (660)
Q Consensus 258 i~~L~~L~~L~l~~~-~~-~~l----p~~l~~L~~L~~L~Ls~~~-l~~--lp~~l~~l~~L~~L~L~~n~-l~--~lp~ 325 (660)
....++|+.|++++| .. ... ......+++|+.|+++.+. +++ +..-...+++|+.|.+..+. ++ .+-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 445666777777663 21 111 1223345677777777776 433 11111225677777765554 44 3444
Q ss_pred hhhcCCCCCeecccCccCC
Q 039656 326 SIKKLSRLTYLNLSGCNML 344 (660)
Q Consensus 326 ~i~~l~~L~~L~L~~c~~l 344 (660)
....+++|++|+|++|..+
T Consensus 290 i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHhcCcccEEeeecCccc
Confidence 4456777888888777665
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.55 E-value=0.064 Score=59.47 Aligned_cols=94 Identities=23% Similarity=0.274 Sum_probs=60.5
Q ss_pred ccCccccCCCCCcEEEecCCCCcC-----CCCC----CCCCCCCCEEEccCCCCCC-----CCcccCCCcc-cCcccccc
Q 039656 253 HLPSSIADLNKLEDLSFFGCKASV-----LPRV----LSGLSSLKWMELRDCDLIK-----IPQDIGSLSS-LEWFVLSG 317 (660)
Q Consensus 253 ~lp~si~~L~~L~~L~l~~~~~~~-----lp~~----l~~L~~L~~L~Ls~~~l~~-----lp~~l~~l~~-L~~L~L~~ 317 (660)
.+...+.....|+.|+++.|.+.. ++.. +....++++|.+++|.++. +-..+...++ +..|++.+
T Consensus 163 ~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 163 PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 344556667788888888887542 2222 3347788888888888764 2223445555 66788888
Q ss_pred ccce-----ecchhhhcC-CCCCeecccCccCCCC
Q 039656 318 NNFE-----HLPASIKKL-SRLTYLNLSGCNMLRS 346 (660)
Q Consensus 318 n~l~-----~lp~~i~~l-~~L~~L~L~~c~~l~~ 346 (660)
|.+. .+...+..+ ..++.++++.|.....
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~ 277 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEK 277 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence 8765 334455555 6778888888876654
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.22 E-value=2.3 Score=26.62 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=10.0
Q ss_pred CceEEEeeCCCCCCCCC
Q 039656 201 ELRYLHWYGYPLRTLPS 217 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~ 217 (660)
+|++|+.++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45566666666655554
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.15 E-value=0.92 Score=43.72 Aligned_cols=77 Identities=17% Similarity=0.078 Sum_probs=39.1
Q ss_pred EeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCC-CCCCCCC-C-CCCC
Q 039656 147 FLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYP-LRTLPSN-F-DPEN 223 (660)
Q Consensus 147 ~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~-l~~lP~~-~-~l~~ 223 (660)
.+|.+........-+.+.+++.++.|.+.++.--+ .---+.+..+.++|+.|++++|+ |++---. + .+++
T Consensus 105 aVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d-------D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 105 AVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD-------DWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred EEecCCchHHHHHHHHHhccchhhhheeccccchh-------hHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 34444443333333456677777777777664210 00011233344588888888885 3332211 1 4566
Q ss_pred ceEEeCC
Q 039656 224 LIALNLP 230 (660)
Q Consensus 224 L~~L~L~ 230 (660)
|+.|.+.
T Consensus 178 Lr~L~l~ 184 (221)
T KOG3864|consen 178 LRRLHLY 184 (221)
T ss_pred hHHHHhc
Confidence 6665544
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=71.62 E-value=1.3 Score=49.13 Aligned_cols=106 Identities=27% Similarity=0.325 Sum_probs=73.0
Q ss_pred CCCCCcEEEecCCC-CcC--CCCCCCCCCCCCEEEccCC-CCCC-C----CcccCCCcccCcccccccc-ce--ecchhh
Q 039656 260 DLNKLEDLSFFGCK-ASV--LPRVLSGLSSLKWMELRDC-DLIK-I----PQDIGSLSSLEWFVLSGNN-FE--HLPASI 327 (660)
Q Consensus 260 ~L~~L~~L~l~~~~-~~~--lp~~l~~L~~L~~L~Ls~~-~l~~-l----p~~l~~l~~L~~L~L~~n~-l~--~lp~~i 327 (660)
..+.|+.|.+.+|. +.. +-......+.|+.|++++| .... . ......+.+|+.|+++.+. ++ .+..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 46889999999887 443 3345677899999999984 2221 1 2234456889999999776 55 233222
Q ss_pred hcCCCCCeecccCccCCCC-----CCCCCcCCcEEecccCcCC
Q 039656 328 KKLSRLTYLNLSGCNMLRS-----LPELPIRLICLDARNCERL 365 (660)
Q Consensus 328 ~~l~~L~~L~L~~c~~l~~-----lp~~~~~L~~L~l~~c~~L 365 (660)
..+++|+.|.+.+|..+.. +-...++|++|++..|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3488999999998886322 2223677999999988876
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=66.64 E-value=3 Score=44.56 Aligned_cols=87 Identities=21% Similarity=0.310 Sum_probs=55.8
Q ss_pred CCCCCcEEEecCCCCcC---CCCCCCCCCCCCEEEccCCCCCC------CCcccCCCcccCccccccccce--ecchhhh
Q 039656 260 DLNKLEDLSFFGCKASV---LPRVLSGLSSLKWMELRDCDLIK------IPQDIGSLSSLEWFVLSGNNFE--HLPASIK 328 (660)
Q Consensus 260 ~L~~L~~L~l~~~~~~~---lp~~l~~L~~L~~L~Ls~~~l~~------lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~ 328 (660)
+.+.|+.|++..|.... +-.--.+.+.|+.|.|++|.+.. +...-..+..|+.|.|+++... ..-..+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 55677888887776332 33323467778888888776543 2233345667788888877655 3334566
Q ss_pred cCCCCCeecccCccCCCC
Q 039656 329 KLSRLTYLNLSGCNMLRS 346 (660)
Q Consensus 329 ~l~~L~~L~L~~c~~l~~ 346 (660)
.+++|+.+++-+|.....
T Consensus 424 ~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTK 441 (483)
T ss_pred hCcccceeeeechhhhhh
Confidence 777888888888876543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=54.05 E-value=11 Score=23.74 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=8.2
Q ss_pred CCceEEeCCCCCCc
Q 039656 222 ENLIALNLPYSKVE 235 (660)
Q Consensus 222 ~~L~~L~L~~n~l~ 235 (660)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666554
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.11 E-value=8.8 Score=37.20 Aligned_cols=40 Identities=28% Similarity=0.528 Sum_probs=20.5
Q ss_pred hhcCCCCCeecccCccCCCC-----CCCCCcCCcEEecccCcCCc
Q 039656 327 IKKLSRLTYLNLSGCNMLRS-----LPELPIRLICLDARNCERLR 366 (660)
Q Consensus 327 i~~l~~L~~L~L~~c~~l~~-----lp~~~~~L~~L~l~~c~~L~ 366 (660)
+..++.|+.|.+.+|+.... +-...++|+.|++++|+..+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 34445555555555544322 23345666666666665544
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=46.67 E-value=8.1 Score=41.41 Aligned_cols=107 Identities=20% Similarity=0.237 Sum_probs=67.2
Q ss_pred CCCCCcEEEecCCCC-cCCC--CCCCCCCCCCEEEccCCCC-CC--CCcccCCCcccCccccccccce---ecchhhhcC
Q 039656 260 DLNKLEDLSFFGCKA-SVLP--RVLSGLSSLKWMELRDCDL-IK--IPQDIGSLSSLEWFVLSGNNFE---HLPASIKKL 330 (660)
Q Consensus 260 ~L~~L~~L~l~~~~~-~~lp--~~l~~L~~L~~L~Ls~~~l-~~--lp~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l 330 (660)
.+..||+|+.++|.. ...+ .-..+..+|+.|-+.+|+. +. +-.--.+...|+.+++..+... ++-.--.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 467788888888873 2211 1123568899999988863 32 1111235678888888866544 233333578
Q ss_pred CCCCeecccCccCCCCC-----C---CCCcCCcEEecccCcCCc
Q 039656 331 SRLTYLNLSGCNMLRSL-----P---ELPIRLICLDARNCERLR 366 (660)
Q Consensus 331 ~~L~~L~L~~c~~l~~l-----p---~~~~~L~~L~l~~c~~L~ 366 (660)
+.|+.|.|++|...... . .....|..|.+.+|+...
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 89999999988765543 1 224566777777776544
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=41.65 E-value=14 Score=22.25 Aligned_cols=12 Identities=42% Similarity=0.451 Sum_probs=4.3
Q ss_pred ccCccccccccc
Q 039656 309 SLEWFVLSGNNF 320 (660)
Q Consensus 309 ~L~~L~L~~n~l 320 (660)
+|++|+|++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.65 E-value=24 Score=21.77 Aligned_cols=12 Identities=50% Similarity=0.911 Sum_probs=5.5
Q ss_pred CCCCeecccCcc
Q 039656 331 SRLTYLNLSGCN 342 (660)
Q Consensus 331 ~~L~~L~L~~c~ 342 (660)
++|+.|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 344444444444
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.40 E-value=17 Score=40.49 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=6.8
Q ss_pred CCCeecccCccCCC
Q 039656 332 RLTYLNLSGCNMLR 345 (660)
Q Consensus 332 ~L~~L~L~~c~~l~ 345 (660)
.|++|.+.+|+..+
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 34555555555443
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=31.66 E-value=38 Score=21.41 Aligned_cols=14 Identities=29% Similarity=0.352 Sum_probs=7.8
Q ss_pred CCCCEEEccCCCCC
Q 039656 285 SSLKWMELRDCDLI 298 (660)
Q Consensus 285 ~~L~~L~Ls~~~l~ 298 (660)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666553
Done!