Query 039656
Match_columns 660
No_of_seqs 795 out of 4129
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 20:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.3E-21 4.3E-26 205.9 15.6 200 140-352 80-298 (328)
2 4fcg_A Uncharacterized protein 99.9 2.4E-21 8.4E-26 203.8 15.4 195 165-369 79-294 (328)
3 1ogq_A PGIP-2, polygalacturona 99.8 4.2E-20 1.4E-24 193.0 13.4 213 141-363 50-279 (313)
4 2z66_A Variable lymphocyte rec 99.8 7E-20 2.4E-24 190.3 13.5 212 142-362 29-258 (306)
5 1ogq_A PGIP-2, polygalacturona 99.8 4.6E-20 1.6E-24 192.7 10.9 215 141-367 76-306 (313)
6 3o6n_A APL1; leucine-rich repe 99.8 9.2E-19 3.2E-23 188.3 19.3 195 159-368 109-333 (390)
7 3zyi_A Leucine-rich repeat-con 99.8 1.5E-18 5.2E-23 190.5 20.9 208 142-362 76-300 (452)
8 4ecn_A Leucine-rich repeat pro 99.8 7.9E-19 2.7E-23 206.0 19.7 215 142-370 574-823 (876)
9 3zyj_A Leucine-rich repeat-con 99.8 1.7E-18 5.9E-23 189.4 20.8 209 142-362 65-289 (440)
10 3oja_B Anopheles plasmodium-re 99.8 1.2E-18 4E-23 198.3 19.3 191 159-363 115-335 (597)
11 1xku_A Decorin; proteoglycan, 99.8 3.3E-18 1.1E-22 179.7 21.3 212 142-369 53-279 (330)
12 3rgz_A Protein brassinosteroid 99.8 1E-18 3.5E-23 204.6 17.8 130 159-297 410-550 (768)
13 4eco_A Uncharacterized protein 99.8 3.3E-19 1.1E-23 204.3 12.1 201 160-362 199-443 (636)
14 4ecn_A Leucine-rich repeat pro 99.8 7.8E-19 2.7E-23 206.0 15.5 201 160-362 441-683 (876)
15 1ozn_A Reticulon 4 receptor; N 99.8 4.1E-18 1.4E-22 175.1 18.9 167 195-362 52-235 (285)
16 2ft3_A Biglycan; proteoglycan, 99.8 7.3E-18 2.5E-22 177.3 19.3 210 142-368 55-279 (332)
17 3rgz_A Protein brassinosteroid 99.8 8.3E-19 2.8E-23 205.4 12.9 197 158-363 433-715 (768)
18 2ft3_A Biglycan; proteoglycan, 99.8 9.5E-18 3.2E-22 176.4 18.7 206 141-363 78-305 (332)
19 1ozn_A Reticulon 4 receptor; N 99.8 6.7E-18 2.3E-22 173.5 16.7 194 141-345 32-239 (285)
20 1p9a_G Platelet glycoprotein I 99.8 8.8E-18 3E-22 173.4 17.1 188 162-362 5-205 (290)
21 4eco_A Uncharacterized protein 99.8 4.5E-18 1.5E-22 194.8 16.0 179 190-369 367-582 (636)
22 3o6n_A APL1; leucine-rich repe 99.8 6.3E-18 2.2E-22 181.8 16.1 193 160-368 86-310 (390)
23 3oja_B Anopheles plasmodium-re 99.8 7.2E-18 2.4E-22 191.8 17.1 77 285-363 232-312 (597)
24 1xku_A Decorin; proteoglycan, 99.8 1.3E-17 4.4E-22 175.1 17.6 206 141-363 76-304 (330)
25 2id5_A Lingo-1, leucine rich r 99.8 3.5E-17 1.2E-21 180.8 21.9 210 142-362 33-282 (477)
26 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-16 3.8E-21 181.7 26.3 153 201-369 102-257 (622)
27 3v47_A TOLL-like receptor 5B a 99.8 1.1E-17 3.6E-22 183.5 17.5 107 262-369 275-387 (455)
28 1h6u_A Internalin H; cell adhe 99.7 3.5E-18 1.2E-22 178.0 12.8 185 163-363 37-228 (308)
29 3v47_A TOLL-like receptor 5B a 99.7 2.8E-17 9.7E-22 180.1 19.4 212 141-362 30-357 (455)
30 2z80_A TOLL-like receptor 2, v 99.7 2.4E-18 8.3E-23 182.5 10.1 167 168-344 53-235 (353)
31 3o53_A Protein LRIM1, AGAP0063 99.7 3.7E-18 1.3E-22 178.4 10.9 204 142-363 35-248 (317)
32 3oja_A Leucine-rich immune mol 99.7 4.6E-18 1.6E-22 188.5 12.2 204 142-363 35-248 (487)
33 2xwt_C Thyrotropin receptor; s 99.7 1.7E-17 5.9E-22 165.9 14.5 186 168-365 32-239 (239)
34 3zyi_A Leucine-rich repeat-con 99.7 4.4E-17 1.5E-21 178.9 18.6 192 167-369 75-282 (452)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 5.8E-17 2E-21 182.9 19.2 81 282-362 350-438 (562)
36 2o6q_A Variable lymphocyte rec 99.7 8.2E-17 2.8E-21 164.2 18.5 150 194-362 56-215 (270)
37 2z62_A TOLL-like receptor 4, v 99.7 2.2E-17 7.4E-22 168.9 14.2 184 168-362 29-234 (276)
38 2o6q_A Variable lymphocyte rec 99.7 1E-16 3.6E-21 163.4 19.3 172 168-369 17-197 (270)
39 3t6q_A CD180 antigen; protein- 99.7 5.8E-17 2E-21 184.4 18.7 98 265-362 257-360 (606)
40 3bz5_A Internalin-J, INLJ; leu 99.7 6.5E-17 2.2E-21 177.7 18.4 124 240-369 171-303 (457)
41 1p9a_G Platelet glycoprotein I 99.7 5.7E-17 1.9E-21 167.3 16.6 168 167-343 31-207 (290)
42 2z62_A TOLL-like receptor 4, v 99.7 2.6E-17 9E-22 168.2 13.9 193 142-345 29-238 (276)
43 1h6u_A Internalin H; cell adhe 99.7 3.5E-17 1.2E-21 170.4 14.7 187 142-348 42-233 (308)
44 4g8a_A TOLL-like receptor 4; l 99.7 9.9E-17 3.4E-21 182.7 19.2 79 284-362 468-552 (635)
45 3rfs_A Internalin B, repeat mo 99.7 6E-17 2E-21 165.4 15.2 173 163-346 37-220 (272)
46 3bz5_A Internalin-J, INLJ; leu 99.7 2E-16 6.7E-21 173.9 20.4 195 142-362 43-243 (457)
47 2id5_A Lingo-1, leucine rich r 99.7 7.9E-17 2.7E-21 177.9 17.3 199 160-368 97-311 (477)
48 2z66_A Variable lymphocyte rec 99.7 2.5E-17 8.5E-22 171.0 12.5 195 141-345 52-262 (306)
49 2z7x_B TOLL-like receptor 1, v 99.7 8.7E-17 3E-21 179.5 17.6 82 282-363 321-410 (520)
50 1wwl_A Monocyte differentiatio 99.7 5E-17 1.7E-21 169.5 14.4 169 164-344 118-309 (312)
51 3zyj_A Leucine-rich repeat-con 99.7 1E-16 3.5E-21 175.3 17.5 190 141-343 88-291 (440)
52 4fmz_A Internalin; leucine ric 99.7 1.9E-16 6.7E-21 167.1 19.0 186 162-362 61-253 (347)
53 3t6q_A CD180 antigen; protein- 99.7 5.6E-17 1.9E-21 184.5 15.7 78 286-363 255-336 (606)
54 4fmz_A Internalin; leucine ric 99.7 1.1E-16 3.8E-21 168.9 16.6 205 141-363 110-322 (347)
55 3vq2_A TLR4, TOLL-like recepto 99.7 4.5E-17 1.5E-21 185.3 14.3 205 142-362 308-531 (606)
56 1jl5_A Outer protein YOPM; leu 99.7 3.6E-16 1.2E-20 171.6 20.8 183 166-372 110-296 (454)
57 1wwl_A Monocyte differentiatio 99.7 1.4E-17 4.7E-22 173.7 8.6 186 165-362 93-306 (312)
58 4glp_A Monocyte differentiatio 99.7 6.1E-17 2.1E-21 168.6 13.3 191 143-344 93-307 (310)
59 1jl5_A Outer protein YOPM; leu 99.7 5.1E-17 1.7E-21 178.4 11.8 205 142-369 12-231 (454)
60 1o6v_A Internalin A; bacterial 99.7 3.8E-16 1.3E-20 172.1 18.8 163 195-362 173-341 (466)
61 2xwt_C Thyrotropin receptor; s 99.7 9.3E-17 3.2E-21 160.6 12.6 188 142-343 32-238 (239)
62 3g06_A SSPH2 (leucine-rich rep 99.7 7.3E-16 2.5E-20 175.0 20.7 175 165-368 99-276 (622)
63 1h6t_A Internalin B; cell adhe 99.7 5.3E-17 1.8E-21 167.6 10.2 168 163-345 42-214 (291)
64 3o53_A Protein LRIM1, AGAP0063 99.7 9.1E-18 3.1E-22 175.5 3.7 207 141-367 58-277 (317)
65 3vq2_A TLR4, TOLL-like recepto 99.7 4.1E-16 1.4E-20 177.4 17.3 161 201-362 329-507 (606)
66 1ziw_A TOLL-like receptor 3; i 99.7 3.5E-16 1.2E-20 180.5 16.8 211 142-362 354-594 (680)
67 3m19_A Variable lymphocyte rec 99.7 6.6E-16 2.3E-20 155.6 16.6 143 201-343 36-191 (251)
68 2z63_A TOLL-like receptor 4, v 99.7 3.5E-16 1.2E-20 176.3 15.7 167 201-368 326-509 (570)
69 2z80_A TOLL-like receptor 2, v 99.7 3.1E-16 1.1E-20 166.2 14.2 210 142-362 53-287 (353)
70 1o6v_A Internalin A; bacterial 99.7 4.5E-16 1.6E-20 171.4 16.0 186 162-363 172-364 (466)
71 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.2E-15 4.2E-20 172.1 19.2 120 141-274 52-181 (562)
72 2z63_A TOLL-like receptor 4, v 99.7 6.9E-16 2.4E-20 173.9 17.1 209 142-363 29-336 (570)
73 4glp_A Monocyte differentiatio 99.7 9.9E-17 3.4E-21 167.0 9.0 187 165-362 89-304 (310)
74 1ziw_A TOLL-like receptor 3; i 99.7 1.6E-15 5.3E-20 175.0 19.4 209 142-361 26-305 (680)
75 3rfs_A Internalin B, repeat mo 99.7 1.8E-15 6.1E-20 154.4 17.6 168 195-363 37-216 (272)
76 3oja_A Leucine-rich immune mol 99.7 9.1E-17 3.1E-21 178.1 8.4 192 165-369 32-230 (487)
77 3cvr_A Invasion plasmid antige 99.7 6.3E-16 2.1E-20 173.5 15.2 180 142-350 60-249 (571)
78 3m19_A Variable lymphocyte rec 99.6 2E-15 6.8E-20 152.1 16.9 161 201-362 15-189 (251)
79 3j0a_A TOLL-like receptor 5; m 99.6 3E-16 1E-20 185.6 12.5 171 192-363 331-537 (844)
80 3cvr_A Invasion plasmid antige 99.6 1.6E-15 5.4E-20 170.3 16.7 169 168-363 60-241 (571)
81 2z81_A CD282 antigen, TOLL-lik 99.6 1.3E-15 4.4E-20 171.0 15.7 195 162-367 276-487 (549)
82 2z7x_B TOLL-like receptor 1, v 99.6 9.6E-16 3.3E-20 171.0 14.1 119 142-274 22-150 (520)
83 4ay9_X Follicle-stimulating ho 99.6 2.2E-15 7.7E-20 159.6 15.7 207 142-360 31-254 (350)
84 1m9s_A Internalin B; cell inva 99.6 6E-16 2.1E-20 175.4 11.8 167 164-345 40-211 (605)
85 2z81_A CD282 antigen, TOLL-lik 99.6 1.7E-15 6E-20 170.0 15.0 187 167-362 26-233 (549)
86 3j0a_A TOLL-like receptor 5; m 99.6 4.4E-15 1.5E-19 175.6 19.1 212 143-370 268-521 (844)
87 1h6t_A Internalin B; cell adhe 99.6 2E-15 7E-20 155.7 12.8 161 197-363 44-211 (291)
88 4ezg_A Putative uncharacterize 99.6 1.3E-15 4.6E-20 147.5 10.6 151 164-343 41-193 (197)
89 2o6s_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 145.8 13.7 131 201-354 53-188 (208)
90 1dce_A Protein (RAB geranylger 99.6 7.4E-18 2.5E-22 189.8 -8.8 183 164-358 346-566 (567)
91 2ca6_A RAN GTPase-activating p 99.6 2.1E-16 7.2E-21 169.7 0.8 196 162-363 55-314 (386)
92 1m9s_A Internalin B; cell inva 99.6 4.6E-15 1.6E-19 168.1 11.4 163 195-363 39-208 (605)
93 2v70_A SLIT-2, SLIT homolog 2 99.6 1.6E-14 5.5E-19 142.6 13.9 126 201-343 33-165 (220)
94 2v9t_B SLIT homolog 2 protein 99.6 2E-14 6.8E-19 141.9 14.0 128 200-343 32-164 (220)
95 3e6j_A Variable lymphocyte rec 99.6 2.1E-14 7.3E-19 142.6 14.0 128 200-344 40-172 (229)
96 4ay9_X Follicle-stimulating ho 99.6 3E-14 1E-18 150.9 15.4 196 167-373 30-244 (350)
97 1xeu_A Internalin C; cellular 99.6 1.8E-15 6.1E-20 153.7 5.4 151 162-345 36-186 (263)
98 1xeu_A Internalin C; cellular 99.5 9.9E-15 3.4E-19 148.2 10.4 148 142-325 42-189 (263)
99 2xot_A Amphoterin-induced prot 99.5 2.3E-14 7.7E-19 152.5 13.1 141 201-341 40-199 (361)
100 2o6s_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 136.2 15.4 143 199-362 27-175 (208)
101 4ezg_A Putative uncharacterize 99.5 3.2E-14 1.1E-18 137.8 11.9 146 196-362 41-191 (197)
102 2v70_A SLIT-2, SLIT homolog 2 99.5 1.2E-13 4E-18 136.4 13.2 145 202-362 13-163 (220)
103 3e6j_A Variable lymphocyte rec 99.5 2.1E-13 7.1E-18 135.4 14.7 144 201-362 20-169 (229)
104 2v9t_B SLIT homolog 2 protein 99.5 1.8E-13 6E-18 135.1 13.7 143 202-362 13-162 (220)
105 2ell_A Acidic leucine-rich nuc 99.5 3.7E-14 1.3E-18 133.5 7.8 130 200-348 24-163 (168)
106 2xot_A Amphoterin-induced prot 99.5 1E-13 3.5E-18 147.4 12.1 145 202-348 20-179 (361)
107 2ast_B S-phase kinase-associat 99.5 1.8E-15 6.3E-20 158.8 -1.6 193 160-362 61-282 (336)
108 4g8a_A TOLL-like receptor 4; l 99.5 2.1E-13 7.3E-18 155.1 15.0 145 199-343 51-213 (635)
109 4b8c_D Glucose-repressible alc 99.5 2.1E-14 7E-19 166.6 5.3 142 201-362 225-369 (727)
110 2ca6_A RAN GTPase-activating p 99.5 5.2E-15 1.8E-19 158.8 -0.1 182 162-348 89-320 (386)
111 2ell_A Acidic leucine-rich nuc 99.5 1.2E-13 4E-18 130.0 9.1 137 165-326 22-165 (168)
112 2ast_B S-phase kinase-associat 99.5 4.4E-15 1.5E-19 155.9 -1.1 196 163-367 89-307 (336)
113 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-13 4.5E-18 130.9 8.5 125 201-343 20-152 (176)
114 2je0_A Acidic leucine-rich nuc 99.4 9.2E-14 3.2E-18 128.0 6.8 123 200-340 17-149 (149)
115 3goz_A Leucine-rich repeat-con 99.4 1.4E-14 4.9E-19 154.0 1.4 195 164-362 19-263 (362)
116 4b8c_D Glucose-repressible alc 99.4 6.1E-14 2.1E-18 162.6 6.1 159 166-351 172-336 (727)
117 3goz_A Leucine-rich repeat-con 99.4 6.1E-15 2.1E-19 156.9 -2.3 215 143-363 24-295 (362)
118 2a5y_B CED-4; apoptosis; HET: 99.4 9.4E-15 3.2E-19 164.2 -1.0 113 1-115 332-473 (549)
119 2wfh_A SLIT homolog 2 protein 99.4 7.8E-13 2.7E-17 127.7 12.2 123 203-343 13-138 (193)
120 2je0_A Acidic leucine-rich nuc 99.4 3E-13 1E-17 124.5 7.5 119 240-360 18-148 (149)
121 1w8a_A SLIT protein; signaling 99.4 1.1E-12 3.8E-17 126.4 11.4 127 202-346 10-141 (192)
122 1z7x_W Ribonuclease inhibitor; 99.4 4.1E-14 1.4E-18 155.1 -1.1 190 168-362 86-323 (461)
123 2o6r_A Variable lymphocyte rec 99.4 3.8E-12 1.3E-16 120.8 12.3 126 202-345 9-138 (177)
124 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-12 3.6E-17 124.6 6.5 137 161-324 13-156 (176)
125 2wfh_A SLIT homolog 2 protein 99.3 6.5E-12 2.2E-16 121.2 12.1 124 170-321 13-139 (193)
126 1w8a_A SLIT protein; signaling 99.3 4E-12 1.4E-16 122.5 10.6 119 242-362 11-136 (192)
127 1dce_A Protein (RAB geranylger 99.3 2.2E-12 7.6E-17 145.1 9.9 115 223-338 442-567 (567)
128 1z7x_W Ribonuclease inhibitor; 99.3 6.9E-14 2.4E-18 153.3 -2.7 217 142-362 86-351 (461)
129 2o6r_A Variable lymphocyte rec 99.2 4.6E-11 1.6E-15 113.2 13.0 127 169-324 9-140 (177)
130 2r9u_A Variable lymphocyte rec 99.2 3.8E-11 1.3E-15 113.7 11.2 109 202-327 14-124 (174)
131 1ds9_A Outer arm dynein; leuci 99.2 2.8E-14 9.5E-19 138.3 -11.7 89 257-346 65-155 (198)
132 2r9u_A Variable lymphocyte rec 99.2 4.1E-11 1.4E-15 113.5 10.0 101 242-344 15-118 (174)
133 1ds9_A Outer arm dynein; leuci 99.2 1.6E-13 5.4E-18 133.0 -7.7 152 164-337 15-180 (198)
134 3g39_A Variable lymphocyte rec 99.2 5.9E-11 2E-15 111.9 10.0 103 202-321 11-115 (170)
135 3g39_A Variable lymphocyte rec 99.2 8.4E-11 2.9E-15 110.8 10.9 102 242-345 12-116 (170)
136 3sfz_A APAF-1, apoptotic pepti 99.1 5.1E-12 1.8E-16 155.2 0.8 113 1-113 323-452 (1249)
137 1vt4_I APAF-1 related killer D 99.1 6E-12 2.1E-16 145.6 -1.0 99 1-106 329-436 (1221)
138 3ogk_B Coronatine-insensitive 99.0 3E-11 1E-15 136.6 0.2 164 197-361 162-351 (592)
139 3ogk_B Coronatine-insensitive 99.0 2.1E-11 7.2E-16 137.8 -1.7 199 164-370 109-349 (592)
140 2ifg_A High affinity nerve gro 98.9 1.5E-09 5E-14 114.3 8.7 92 250-342 20-114 (347)
141 1z6t_A APAF-1, apoptotic prote 98.9 2.3E-10 7.9E-15 129.6 1.4 138 1-138 323-496 (591)
142 2p1m_B Transport inhibitor res 98.9 3.3E-11 1.1E-15 136.2 -7.2 170 165-341 128-324 (594)
143 3sb4_A Hypothetical leucine ri 98.9 7.3E-09 2.5E-13 108.3 10.8 173 166-341 48-307 (329)
144 2ifg_A High affinity nerve gro 98.8 8.2E-09 2.8E-13 108.5 9.8 102 204-323 12-118 (347)
145 3sb4_A Hypothetical leucine ri 98.8 1.5E-08 5.3E-13 105.7 10.5 169 157-338 83-328 (329)
146 2p1m_B Transport inhibitor res 98.7 1.1E-10 3.6E-15 132.0 -9.1 191 163-362 101-324 (594)
147 3un9_A NLR family member X1; l 98.7 8.8E-10 3E-14 117.4 -1.9 163 166-344 71-252 (372)
148 3un9_A NLR family member X1; l 98.7 5.9E-10 2E-14 118.7 -5.2 138 165-322 99-253 (372)
149 4fdw_A Leucine rich hypothetic 98.6 5.9E-07 2E-11 96.4 15.0 135 201-340 181-332 (401)
150 4fdw_A Leucine rich hypothetic 98.4 2.2E-06 7.4E-11 92.0 15.3 174 157-349 126-316 (401)
151 2ra8_A Uncharacterized protein 98.4 1.1E-07 3.7E-12 100.6 2.4 189 137-343 103-319 (362)
152 1io0_A Tropomodulin; LRR prote 98.0 1E-06 3.5E-11 83.9 -0.2 88 255-342 58-162 (185)
153 3rw6_A Nuclear RNA export fact 97.8 6E-06 2.1E-10 83.0 2.5 78 259-337 167-257 (267)
154 2ra8_A Uncharacterized protein 97.7 1.1E-05 3.7E-10 85.1 2.5 159 161-342 166-341 (362)
155 3rw6_A Nuclear RNA export fact 97.6 3.8E-05 1.3E-09 77.2 4.6 67 282-349 167-238 (267)
156 1io0_A Tropomodulin; LRR prote 97.5 1.5E-05 5.1E-10 75.7 0.3 108 255-362 29-161 (185)
157 3e4g_A ATP synthase subunit S, 97.3 0.00011 3.7E-09 68.8 3.8 83 262-345 61-153 (176)
158 3e4g_A ATP synthase subunit S, 97.2 0.0002 6.8E-09 67.0 4.1 90 277-367 53-154 (176)
159 4fs7_A Uncharacterized protein 96.9 0.0067 2.3E-07 64.3 13.0 63 158-231 153-217 (394)
160 4fs7_A Uncharacterized protein 96.6 0.011 3.7E-07 62.7 12.3 78 258-339 272-351 (394)
161 4gt6_A Cell surface protein; l 96.5 0.043 1.5E-06 58.0 15.8 21 157-177 77-97 (394)
162 4h09_A Hypothetical leucine ri 96.2 0.1 3.5E-06 54.6 16.6 21 156-176 58-78 (379)
163 4gt6_A Cell surface protein; l 95.9 0.21 7.1E-06 52.6 17.0 81 257-339 260-342 (394)
164 3rfe_A Platelet glycoprotein I 95.3 0.017 5.6E-07 51.1 5.1 54 266-321 12-68 (130)
165 4h09_A Hypothetical leucine ri 95.3 0.14 4.9E-06 53.5 13.1 81 257-339 258-341 (379)
166 3rfe_A Platelet glycoprotein I 94.6 0.043 1.5E-06 48.3 5.7 52 289-342 12-66 (130)
167 1pgv_A TMD-1, tropomodulin TMD 94.6 0.0046 1.6E-07 58.8 -0.7 56 285-340 70-135 (197)
168 1pgv_A TMD-1, tropomodulin TMD 93.1 0.023 7.9E-07 53.9 1.0 60 258-317 66-135 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.3e-21 Score=205.94 Aligned_cols=200 Identities=24% Similarity=0.350 Sum_probs=149.8
Q ss_pred CCcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC
Q 039656 140 TIAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF 219 (660)
Q Consensus 140 ~~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~ 219 (660)
...++.+.+....+. .++ ..+.++++|++|++++|.+. .+|..+..++ +|++|++++|.+..+|..+
T Consensus 80 ~~~l~~L~L~~n~l~--~lp-~~l~~l~~L~~L~L~~n~l~---------~lp~~~~~l~-~L~~L~Ls~n~l~~lp~~l 146 (328)
T 4fcg_A 80 QPGRVALELRSVPLP--QFP-DQAFRLSHLQHMTIDAAGLM---------ELPDTMQQFA-GLETLTLARNPLRALPASI 146 (328)
T ss_dssp STTCCEEEEESSCCS--SCC-SCGGGGTTCSEEEEESSCCC---------CCCSCGGGGT-TCSEEEEESCCCCCCCGGG
T ss_pred ccceeEEEccCCCch--hcC-hhhhhCCCCCEEECCCCCcc---------chhHHHhccC-CCCEEECCCCccccCcHHH
Confidence 345667777666664 333 34667999999999999873 6788888888 8999999999999999888
Q ss_pred -CCCCceEEeCCCCCCc-cc---------------cCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCC
Q 039656 220 -DPENLIALNLPYSKVE-QI---------------WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLS 282 (660)
Q Consensus 220 -~l~~L~~L~L~~n~l~-~l---------------~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~ 282 (660)
.+++|++|++++|++. .+ .+.++.|++++|.++.+|.+++++++|++|++++|.+..+|..+.
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~ 226 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence 8999999999986543 33 345667777777777777777777777777777777777777777
Q ss_pred CCCCCCEEEccCCCCCC-CCcccCCCcccCccccccccce-ecchhhhcCCCCCeecccCccCCCCCCCCCc
Q 039656 283 GLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSGNNFE-HLPASIKKLSRLTYLNLSGCNMLRSLPELPI 352 (660)
Q Consensus 283 ~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~~~ 352 (660)
.+++|++|+|++|.+.+ +|..++.+++|++|+|++|++. .+|..+..+++|+.|+|++|+.++.+|+.+.
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 77777777777776665 6777777777777777776554 6777777777777777777777777776533
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.4e-21 Score=203.76 Aligned_cols=195 Identities=23% Similarity=0.266 Sum_probs=173.9
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccC----
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWK---- 239 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~---- 239 (660)
...+++.|++++|.+. .+|..+..++ +|++|++++|.+..+|..+ .+++|++|+|++|.++.++.
T Consensus 79 ~~~~l~~L~L~~n~l~---------~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 148 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP---------QFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIAS 148 (328)
T ss_dssp TSTTCCEEEEESSCCS---------SCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGG
T ss_pred cccceeEEEccCCCch---------hcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhc
Confidence 4578999999999873 7888899988 9999999999999999888 89999999999999987753
Q ss_pred --CCeeecCCCC-CCcccCccccC---------CCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCC
Q 039656 240 --GEKYLNVDGS-AISHLPSSIAD---------LNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSL 307 (660)
Q Consensus 240 --~l~~L~l~~~-~l~~lp~si~~---------L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l 307 (660)
.+++|++++| .+..+|..++. +++|++|++++|.+..+|..+.++++|++|+|++|.+.++|+.++.+
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 6788899874 55688887765 99999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccce-ecchhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCcCCcccC
Q 039656 308 SSLEWFVLSGNNFE-HLPASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCERLRTLQ 369 (660)
Q Consensus 308 ~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~L~~l~ 369 (660)
++|++|++++|++. .+|..++.+++|+.|+|++|+.++.+|.. +++|+.|++++|..+..++
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 99999999998776 88888999999999999999999999965 6789999999998777665
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4.2e-20 Score=192.99 Aligned_cols=213 Identities=16% Similarity=0.192 Sum_probs=178.8
Q ss_pred CcEEEEEeecCCCeeeecCcccccCCCCccEEEEec-CCCCCcccCCcceecCCccccCCcCceEEEeeCCCCC-CCCCC
Q 039656 141 IAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYM-PNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLR-TLPSN 218 (660)
Q Consensus 141 ~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~-n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~-~lP~~ 218 (660)
..++.+.+....+......+.+|.++++|++|++++ |.+. ..+|..+..++ +|++|++++|.+. .+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~--------~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV--------GPIPPAIAKLT-QLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE--------SCCCGGGGGCT-TCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc--------ccCChhHhcCC-CCCEEECcCCeeCCcCCHH
Confidence 578888887776643223456899999999999995 7653 36788888888 9999999999996 78887
Q ss_pred C-CCCCceEEeCCCCCCccc-------cCCCeeecCCCCCCc-ccCccccCCC-CCcEEEecCCCCc-CCCCCCCCCCCC
Q 039656 219 F-DPENLIALNLPYSKVEQI-------WKGEKYLNVDGSAIS-HLPSSIADLN-KLEDLSFFGCKAS-VLPRVLSGLSSL 287 (660)
Q Consensus 219 ~-~l~~L~~L~L~~n~l~~l-------~~~l~~L~l~~~~l~-~lp~si~~L~-~L~~L~l~~~~~~-~lp~~l~~L~~L 287 (660)
+ .+++|++|++++|.++.. .+.+++|++++|.+. .+|..++.++ +|++|++++|.+. .+|..+..++ |
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 7 899999999999998843 246789999999998 8999999998 9999999999976 7788888887 9
Q ss_pred CEEEccCCCCCC-CCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCc
Q 039656 288 KWMELRDCDLIK-IPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCE 363 (660)
Q Consensus 288 ~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~ 363 (660)
+.|+|++|.+.+ .|..++.+++|+.|++++|.++..+..+..+++|++|+|++|...+.+|.. +++|+.|+++++.
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 999999999886 677889999999999999999966656888999999999999888788865 5778888888774
No 4
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=7e-20 Score=190.32 Aligned_cols=212 Identities=26% Similarity=0.329 Sum_probs=167.4
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-C
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-D 220 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~ 220 (660)
.++.+.+....+. .++...|.++++|+.|++++|.+.. ....+..+..++ +|++|++++|.+..+|..+ .
T Consensus 29 ~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~~~~~-~L~~L~Ls~n~i~~l~~~~~~ 99 (306)
T 2z66_A 29 SATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSF------KGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLG 99 (306)
T ss_dssp TCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCE------EEEEEHHHHSCS-CCCEEECCSCSEEEEEEEEET
T ss_pred CCCEEECCCCccC--ccCHhHhhccccCCEEECCCCccCc------ccCccccccccc-ccCEEECCCCccccChhhcCC
Confidence 4555555555443 5666778999999999999988741 122344555566 8999999999998888777 8
Q ss_pred CCCceEEeCCCCCCcccc--------CCCeeecCCCCCCccc-CccccCCCCCcEEEecCCCCcC--CCCCCCCCCCCCE
Q 039656 221 PENLIALNLPYSKVEQIW--------KGEKYLNVDGSAISHL-PSSIADLNKLEDLSFFGCKASV--LPRVLSGLSSLKW 289 (660)
Q Consensus 221 l~~L~~L~L~~n~l~~l~--------~~l~~L~l~~~~l~~l-p~si~~L~~L~~L~l~~~~~~~--lp~~l~~L~~L~~ 289 (660)
+++|++|++++|.++.++ +.++.|++++|.+..+ |..+..+++|++|++++|.+.. +|..+..+++|++
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 899999999999887664 3678899999998854 4568889999999999998764 7888899999999
Q ss_pred EEccCCCCCCC-CcccCCCcccCccccccccceecch-hhhcCCCCCeecccCccCCCCCCCC----CcCCcEEecccC
Q 039656 290 MELRDCDLIKI-PQDIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSGCNMLRSLPEL----PIRLICLDARNC 362 (660)
Q Consensus 290 L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~----~~~L~~L~l~~c 362 (660)
|+|++|.+.++ |..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|+..+..|.. +++|+.|++.++
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 99999999885 6788899999999999999987764 5788999999999999877766643 357777777665
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=4.6e-20 Score=192.68 Aligned_cols=215 Identities=17% Similarity=0.170 Sum_probs=181.8
Q ss_pred CcEEEEEeec-CCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCC-CCCCC
Q 039656 141 IAIEGIFLDM-SKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLR-TLPSN 218 (660)
Q Consensus 141 ~~v~~i~l~~-s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~-~lP~~ 218 (660)
..++.+.+.. +.+ ....+..|.++++|++|++++|.+. ..+|..+..++ +|++|++++|.+. .+|..
T Consensus 76 ~~L~~L~L~~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~l~--------~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 76 PYLNFLYIGGINNL--VGPIPPAIAKLTQLHYLYITHTNVS--------GAIPDFLSQIK-TLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp TTCSEEEEEEETTE--ESCCCGGGGGCTTCSEEEEEEECCE--------EECCGGGGGCT-TCCEEECCSSEEESCCCGG
T ss_pred CCCCeeeCCCCCcc--cccCChhHhcCCCCCEEECcCCeeC--------CcCCHHHhCCC-CCCEEeCCCCccCCcCChH
Confidence 3455555552 333 2234667999999999999999874 36788899998 9999999999996 78888
Q ss_pred C-CCCCceEEeCCCCCCcc-cc-------CCCeeecCCCCCCc-ccCccccCCCCCcEEEecCCCCc-CCCCCCCCCCCC
Q 039656 219 F-DPENLIALNLPYSKVEQ-IW-------KGEKYLNVDGSAIS-HLPSSIADLNKLEDLSFFGCKAS-VLPRVLSGLSSL 287 (660)
Q Consensus 219 ~-~l~~L~~L~L~~n~l~~-l~-------~~l~~L~l~~~~l~-~lp~si~~L~~L~~L~l~~~~~~-~lp~~l~~L~~L 287 (660)
+ .+++|++|++++|++++ ++ +.++.|++++|.+. .+|..++.++ |++|++++|.+. ..|..+..+++|
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence 8 89999999999999973 32 37899999999999 7899999997 999999999976 567789999999
Q ss_pred CEEEccCCCCCCCCcccCCCcccCccccccccce-ecchhhhcCCCCCeecccCccCCCCCCCC--CcCCcEEecccCcC
Q 039656 288 KWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFE-HLPASIKKLSRLTYLNLSGCNMLRSLPEL--PIRLICLDARNCER 364 (660)
Q Consensus 288 ~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~ 364 (660)
+.|+|++|.+...++.+..+++|++|++++|.++ .+|..+..+++|+.|+|++|+..+.+|.. +++|+.|++.+++.
T Consensus 224 ~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp SEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred CEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 9999999999986667999999999999999999 89999999999999999999999899976 56677777777665
Q ss_pred Ccc
Q 039656 365 LRT 367 (660)
Q Consensus 365 L~~ 367 (660)
+..
T Consensus 304 lc~ 306 (313)
T 1ogq_A 304 LCG 306 (313)
T ss_dssp EES
T ss_pred ccC
Confidence 543
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=9.2e-19 Score=188.32 Aligned_cols=195 Identities=18% Similarity=0.169 Sum_probs=125.2
Q ss_pred CcccccCCCCccEEEEecCCCCCcccCCcceecCCcc-ccCCcCceEEEeeCCCCCCCCCC-C-CCCCceEEeCCCCCCc
Q 039656 159 ACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGL-EYLPEELRYLHWYGYPLRTLPSN-F-DPENLIALNLPYSKVE 235 (660)
Q Consensus 159 ~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l-~~l~~~Lr~L~l~~~~l~~lP~~-~-~l~~L~~L~L~~n~l~ 235 (660)
.+.+|.++++|+.|++++|.+. .+|..+ ..++ +|++|++++|.+..++.. + .+++|++|++++|.++
T Consensus 109 ~~~~~~~l~~L~~L~L~~n~l~---------~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERNDLS---------SLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CHHHhcCCCCCCEEECCCCccC---------cCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 3444555555555555555442 344432 3444 566666666666555432 3 5566666666666554
Q ss_pred cc-----------------------cCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEc
Q 039656 236 QI-----------------------WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMEL 292 (660)
Q Consensus 236 ~l-----------------------~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~L 292 (660)
.+ +..++.|++++|.+..+|.. ..++|+.|++++|.+...+ .+..+++|++|+|
T Consensus 179 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 255 (390)
T 3o6n_A 179 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTA-WLLNYPGLVEVDL 255 (390)
T ss_dssp BCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred ccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccH-HHcCCCCccEEEC
Confidence 32 11233333444444433332 2346777777777766553 4778889999999
Q ss_pred cCCCCCC-CCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCcCCccc
Q 039656 293 RDCDLIK-IPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCERLRTL 368 (660)
Q Consensus 293 s~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~L~~l 368 (660)
++|.+.+ .|..++.+++|+.|++++|+++.+|..+..+++|+.|+|++|+. ..+|.. +++|+.|++.++. ++.+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N~-i~~~ 333 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS-IVTL 333 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSC-CCCC
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCCc-ccee
Confidence 9999888 47788889999999999999998888788889999999998864 466643 5788888888774 4444
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.5e-18 Score=190.53 Aligned_cols=208 Identities=22% Similarity=0.243 Sum_probs=156.8
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCC-C-
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSN-F- 219 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~-~- 219 (660)
.++.+.+..+. ...+.+.+|.++++|+.|++++|.+. ...+..+..++ +|++|++++|.++.+|.. +
T Consensus 76 ~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 76 NTRYLNLMENN--IQMIQADTFRHLHHLEVLQLGRNSIR--------QIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp TCSEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCT-TCCEEECCSSCCSBCCTTTSS
T ss_pred CccEEECcCCc--CceECHHHcCCCCCCCEEECCCCccC--------CcChhhccCcc-cCCEEECCCCcCCccChhhhc
Confidence 34444444333 34456678889999999999888874 23345677777 899999999998888865 4
Q ss_pred CCCCceEEeCCCCCCccccC-------CCeeecCCC-CCCcccCc-cccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEE
Q 039656 220 DPENLIALNLPYSKVEQIWK-------GEKYLNVDG-SAISHLPS-SIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWM 290 (660)
Q Consensus 220 ~l~~L~~L~L~~n~l~~l~~-------~l~~L~l~~-~~l~~lp~-si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L 290 (660)
.+++|++|+|++|+++.+++ .++.|++++ +.+..+|. .+..+++|++|++++|.+..+|. +..+++|+.|
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 223 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEEL 223 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEE
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEE
Confidence 68899999999998887643 567888876 67777765 57888888888888888888875 8888888888
Q ss_pred EccCCCCCCC-CcccCCCcccCccccccccceec-chhhhcCCCCCeecccCccCCCCCC-CC---CcCCcEEecccC
Q 039656 291 ELRDCDLIKI-PQDIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRSLP-EL---PIRLICLDARNC 362 (660)
Q Consensus 291 ~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp-~~---~~~L~~L~l~~c 362 (660)
+|++|.+.++ |..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+.. .+| .. +++|+.|++.++
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSS
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCC
Confidence 8888888884 66788888888888888888855 556788888888888887654 444 32 456666666654
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=7.9e-19 Score=205.97 Aligned_cols=215 Identities=18% Similarity=0.234 Sum_probs=167.9
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-C
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-D 220 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~ 220 (660)
.++.+.+..+.+. .++ .|.++++|+.|++++|.+. .+|..+..++.+|++|++++|.+..+|..+ .
T Consensus 574 ~L~~L~Ls~N~l~--~lp--~~~~L~~L~~L~Ls~N~l~---------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~ 640 (876)
T 4ecn_A 574 KLGLLDCVHNKVR--HLE--AFGTNVKLTDLKLDYNQIE---------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640 (876)
T ss_dssp TCCEEECTTSCCC--BCC--CCCTTSEESEEECCSSCCS---------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCT
T ss_pred CCCEEECCCCCcc--cch--hhcCCCcceEEECcCCccc---------cchHHHhhccccCCEEECcCCCCCcCchhhhc
Confidence 4444444444443 333 6777788888888777762 678888888833999999999999999777 3
Q ss_pred C--CCceEEeCCCCCCccccC------------CCeeecCCCCCCcccCcccc-CCCCCcEEEecCCCCcCCCCCCCCCC
Q 039656 221 P--ENLIALNLPYSKVEQIWK------------GEKYLNVDGSAISHLPSSIA-DLNKLEDLSFFGCKASVLPRVLSGLS 285 (660)
Q Consensus 221 l--~~L~~L~L~~n~l~~l~~------------~l~~L~l~~~~l~~lp~si~-~L~~L~~L~l~~~~~~~lp~~l~~L~ 285 (660)
+ .+|+.|++++|++.+..+ .++.|++++|.+..+|..+. .+++|+.|++++|.+..+|..+....
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence 3 449999999998865432 57889999999999998765 78999999999999888887665433
Q ss_pred --------CCCEEEccCCCCCCCCcccC--CCcccCccccccccceecchhhhcCCCCCeecccC------ccCCCCCCC
Q 039656 286 --------SLKWMELRDCDLIKIPQDIG--SLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSG------CNMLRSLPE 349 (660)
Q Consensus 286 --------~L~~L~Ls~~~l~~lp~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~~l~~lp~ 349 (660)
+|+.|+|++|++..+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++ |+..+.+|.
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred cccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 89999999999999998887 89999999999999999998899999999999976 666777886
Q ss_pred C---CcCCcEEecccCcCCcccCC
Q 039656 350 L---PIRLICLDARNCERLRTLQE 370 (660)
Q Consensus 350 ~---~~~L~~L~l~~c~~L~~l~~ 370 (660)
. +++|+.|++++|. +..++.
T Consensus 801 ~l~~L~~L~~L~Ls~N~-L~~Ip~ 823 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSND-IRKVDE 823 (876)
T ss_dssp TGGGCSSCCEEECCSSC-CCBCCS
T ss_pred HHhcCCCCCEEECCCCC-CCccCH
Confidence 5 6788888888874 355543
No 9
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=189.43 Aligned_cols=209 Identities=19% Similarity=0.248 Sum_probs=163.4
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCC-C-
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSN-F- 219 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~-~- 219 (660)
.++.+.+..+.+ ..+.+.+|.++++|+.|+|++|.+. ...+..+..++ +|++|++++|.++.+|.. +
T Consensus 65 ~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~--------~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 65 NTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIR--------TIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp TCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCC--------EECGGGGTTCS-SCCEEECCSSCCSSCCTTTSC
T ss_pred CCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCC--------ccChhhccCCc-cCCEEECCCCcCCeeCHhHhh
Confidence 344444444443 4456678999999999999999874 12335677777 899999999999988864 4
Q ss_pred CCCCceEEeCCCCCCccccC-------CCeeecCCC-CCCcccCc-cccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEE
Q 039656 220 DPENLIALNLPYSKVEQIWK-------GEKYLNVDG-SAISHLPS-SIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWM 290 (660)
Q Consensus 220 ~l~~L~~L~L~~n~l~~l~~-------~l~~L~l~~-~~l~~lp~-si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L 290 (660)
.+++|++|+|++|.++.+++ .++.|++++ +.+..+|. .+.++++|++|++++|.+..+|. +..+++|+.|
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 212 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDEL 212 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEE
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEE
Confidence 88999999999999987753 678888887 66777776 68889999999999999888885 8889999999
Q ss_pred EccCCCCCCC-CcccCCCcccCccccccccceec-chhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccC
Q 039656 291 ELRDCDLIKI-PQDIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNC 362 (660)
Q Consensus 291 ~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c 362 (660)
+|++|.+..+ |..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+.....+.. +++|+.|++.++
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 9999999884 67889999999999999999965 456788999999999988655433333 456666666554
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.2e-18 Score=198.29 Aligned_cols=191 Identities=18% Similarity=0.179 Sum_probs=110.8
Q ss_pred CcccccCCCCccEEEEecCCCCCcccCCcceecCCcc-ccCCcCceEEEeeCCCCCCCCC-CC-CCCCceEEeCCCCCCc
Q 039656 159 ACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGL-EYLPEELRYLHWYGYPLRTLPS-NF-DPENLIALNLPYSKVE 235 (660)
Q Consensus 159 ~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l-~~l~~~Lr~L~l~~~~l~~lP~-~~-~l~~L~~L~L~~n~l~ 235 (660)
.+..|.++++|++|++++|.+. .+|..+ ..++ +|++|++++|.+..+|. .+ .+++|++|++++|.++
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~l~---------~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 115 PPHVFQNVPLLTVLVLERNDLS---------SLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CHHHHcCCCCCCEEEeeCCCCC---------CCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 3444555555555555555442 333332 3444 56666666655544443 23 5555555555555554
Q ss_pred ccc----C-------------------CCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEc
Q 039656 236 QIW----K-------------------GEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMEL 292 (660)
Q Consensus 236 ~l~----~-------------------~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~L 292 (660)
.++ + .++.|++++|.+..+|..+ .++|+.|++++|.+... ..+..+++|+.|+|
T Consensus 185 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~L 261 (597)
T 3oja_B 185 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDL 261 (597)
T ss_dssp BCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEEC
T ss_pred CcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEEC
Confidence 321 1 1222333333333322211 13455555555555443 34677778888888
Q ss_pred cCCCCCC-CCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCc
Q 039656 293 RDCDLIK-IPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCE 363 (660)
Q Consensus 293 s~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~ 363 (660)
++|.+.+ .|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++|... .+|.. +++|+.|++.+|.
T Consensus 262 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 262 SYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred CCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence 8888777 466777888888888888888877777777788888888877644 56643 5677777777764
No 11
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=3.3e-18 Score=179.72 Aligned_cols=212 Identities=16% Similarity=0.194 Sum_probs=168.2
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDP 221 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 221 (660)
.++.+.+ +......+.+.+|.++++|++|++++|.+.+ ..|..+..++ +|++|++++|.++.+|..+.
T Consensus 53 ~l~~L~L--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~- 120 (330)
T 1xku_A 53 DTALLDL--QNNKITEIKDGDFKNLKNLHTLILINNKISK--------ISPGAFAPLV-KLERLYLSKNQLKELPEKMP- 120 (330)
T ss_dssp TCCEEEC--CSSCCCCBCTTTTTTCTTCCEEECCSSCCCC--------BCTTTTTTCT-TCCEEECCSSCCSBCCSSCC-
T ss_pred CCeEEEC--CCCcCCEeChhhhccCCCCCEEECCCCcCCe--------eCHHHhcCCC-CCCEEECCCCcCCccChhhc-
Confidence 3444444 4333344566678999999999999988752 3467788888 89999999999998887764
Q ss_pred CCceEEeCCCCCCcccc-------CCCeeecCCCCCCc---ccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEE
Q 039656 222 ENLIALNLPYSKVEQIW-------KGEKYLNVDGSAIS---HLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWME 291 (660)
Q Consensus 222 ~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~---~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~ 291 (660)
++|++|++++|.++.++ +.++.|++++|.+. ..|..+..+++|++|++++|.+..+|..+. ++|++|+
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELH 198 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEE
Confidence 78999999999988763 46789999999986 346678899999999999999988887665 8999999
Q ss_pred ccCCCCCCC-CcccCCCcccCccccccccceecch-hhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCcCCc
Q 039656 292 LRDCDLIKI-PQDIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCERLR 366 (660)
Q Consensus 292 Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~L~ 366 (660)
+++|.+.++ |..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|+. ..+|.. +++|+.|++.++. ++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~-i~ 276 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNN-IS 276 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSC-CC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-ccCChhhccCCCcCEEECCCCc-CC
Confidence 999999884 6788999999999999999997664 688999999999998864 477764 5678888888763 44
Q ss_pred ccC
Q 039656 367 TLQ 369 (660)
Q Consensus 367 ~l~ 369 (660)
.++
T Consensus 277 ~~~ 279 (330)
T 1xku_A 277 AIG 279 (330)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=1e-18 Score=204.57 Aligned_cols=130 Identities=21% Similarity=0.304 Sum_probs=61.3
Q ss_pred CcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCC-CCCCCC-CCCCceEEeCCCCCCcc
Q 039656 159 ACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLR-TLPSNF-DPENLIALNLPYSKVEQ 236 (660)
Q Consensus 159 ~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~-~lP~~~-~l~~L~~L~L~~n~l~~ 236 (660)
.+..|.++++|+.|++++|.+.+ .+|..+..++ +|++|++++|.+. .+|..+ .+++|++|++++|++.+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~--------~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSG--------TIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEES--------CCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred cCHHHhcCCCCCEEECcCCcccC--------cccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 34456666666666666655431 3344444444 4555555555443 344444 44445555555544442
Q ss_pred c-------cCCCeeecCCCCCCc-ccCccccCCCCCcEEEecCCCCc-CCCCCCCCCCCCCEEEccCCCC
Q 039656 237 I-------WKGEKYLNVDGSAIS-HLPSSIADLNKLEDLSFFGCKAS-VLPRVLSGLSSLKWMELRDCDL 297 (660)
Q Consensus 237 l-------~~~l~~L~l~~~~l~-~lp~si~~L~~L~~L~l~~~~~~-~lp~~l~~L~~L~~L~Ls~~~l 297 (660)
. .+.++.|++++|.+. .+|..++.+++|++|++++|.+. .+|..+.++++|+.|++++|.+
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 2 123444444444444 34444444444444444444433 3444444444444444444433
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=3.3e-19 Score=204.28 Aligned_cols=201 Identities=14% Similarity=0.179 Sum_probs=174.0
Q ss_pred cccccCCCCccEEEEecCCCCCcccCCcc---------eecCCccc--cCCcCceEEEeeCCCC-CCCCCCC-CCCCceE
Q 039656 160 CGTFTSMSNLRLLKFYMPNRDGFSIMSSK---------VHLDQGLE--YLPEELRYLHWYGYPL-RTLPSNF-DPENLIA 226 (660)
Q Consensus 160 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~---------~~lp~~l~--~l~~~Lr~L~l~~~~l-~~lP~~~-~l~~L~~ 226 (660)
+..|+++++|++|++++|.+++....... ..+|..+. .++ +|++|++++|.+ +.+|..+ ++++|++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC-CCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 45799999999999999998641000000 01899988 998 999999999986 7889888 8999999
Q ss_pred EeCCCCC-Ccc--cc------------CCCeeecCCCCCCcccCc--cccCCCCCcEEEecCCCCc-CCCCCCCCCCCCC
Q 039656 227 LNLPYSK-VEQ--IW------------KGEKYLNVDGSAISHLPS--SIADLNKLEDLSFFGCKAS-VLPRVLSGLSSLK 288 (660)
Q Consensus 227 L~L~~n~-l~~--l~------------~~l~~L~l~~~~l~~lp~--si~~L~~L~~L~l~~~~~~-~lp~~l~~L~~L~ 288 (660)
|++++|+ +++ +| +.++.|++++|.++.+|. .++++++|++|++++|.+. .+| .+.++++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 9999998 875 43 789999999999999999 9999999999999999988 899 899999999
Q ss_pred EEEccCCCCCCCCcccCCCcc-cCccccccccceecchhhhcCC--CCCeecccCccCCCCCCCCCc----------CCc
Q 039656 289 WMELRDCDLIKIPQDIGSLSS-LEWFVLSGNNFEHLPASIKKLS--RLTYLNLSGCNMLRSLPELPI----------RLI 355 (660)
Q Consensus 289 ~L~Ls~~~l~~lp~~l~~l~~-L~~L~L~~n~l~~lp~~i~~l~--~L~~L~L~~c~~l~~lp~~~~----------~L~ 355 (660)
.|+|++|.+..+|..++.+++ |++|++++|.++.+|..+..++ +|+.|++++|...+.+|..++ +|+
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 999999999999999999999 9999999999999998877655 899999999998888776544 788
Q ss_pred EEecccC
Q 039656 356 CLDARNC 362 (660)
Q Consensus 356 ~L~l~~c 362 (660)
.|++.+|
T Consensus 437 ~L~Ls~N 443 (636)
T 4eco_A 437 SINLSNN 443 (636)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 8888876
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=7.8e-19 Score=206.03 Aligned_cols=201 Identities=16% Similarity=0.199 Sum_probs=173.6
Q ss_pred cccccCCCCccEEEEecCCCCCcccCCcce---------ecCCccc--cCCcCceEEEeeCCCC-CCCCCCC-CCCCceE
Q 039656 160 CGTFTSMSNLRLLKFYMPNRDGFSIMSSKV---------HLDQGLE--YLPEELRYLHWYGYPL-RTLPSNF-DPENLIA 226 (660)
Q Consensus 160 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~---------~lp~~l~--~l~~~Lr~L~l~~~~l-~~lP~~~-~l~~L~~ 226 (660)
+..|.++++|+.|+|++|.+++........ .+|..+. .++ +|++|++++|.+ +.+|..+ .+++|++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 457999999999999999986410000001 3888887 888 999999999985 7899888 8999999
Q ss_pred EeCCCCC-Ccc--cc-------------CCCeeecCCCCCCcccCc--cccCCCCCcEEEecCCCCcCCCCCCCCCCCCC
Q 039656 227 LNLPYSK-VEQ--IW-------------KGEKYLNVDGSAISHLPS--SIADLNKLEDLSFFGCKASVLPRVLSGLSSLK 288 (660)
Q Consensus 227 L~L~~n~-l~~--l~-------------~~l~~L~l~~~~l~~lp~--si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~ 288 (660)
|+|++|+ ++. +| +.++.|++++|.+..+|. .++++++|+.|++++|.+..+| .+.++++|+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT 598 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence 9999998 875 43 279999999999999999 9999999999999999998999 799999999
Q ss_pred EEEccCCCCCCCCcccCCCcc-cCccccccccceecchhhhcCCC--CCeecccCccCCCCCCCCC--------cCCcEE
Q 039656 289 WMELRDCDLIKIPQDIGSLSS-LEWFVLSGNNFEHLPASIKKLSR--LTYLNLSGCNMLRSLPELP--------IRLICL 357 (660)
Q Consensus 289 ~L~Ls~~~l~~lp~~l~~l~~-L~~L~L~~n~l~~lp~~i~~l~~--L~~L~L~~c~~l~~lp~~~--------~~L~~L 357 (660)
.|+|++|.+..+|..+..+++ |+.|+|++|.++.+|..+..++. |+.|+|++|+..+.+|.++ ++|+.|
T Consensus 599 ~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp EEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred EEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 999999999999999999999 99999999999999988877654 9999999999888777554 478888
Q ss_pred ecccC
Q 039656 358 DARNC 362 (660)
Q Consensus 358 ~l~~c 362 (660)
++++|
T Consensus 679 ~Ls~N 683 (876)
T 4ecn_A 679 TLSYN 683 (876)
T ss_dssp ECCSS
T ss_pred EccCC
Confidence 88776
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=4.1e-18 Score=175.09 Aligned_cols=167 Identities=22% Similarity=0.263 Sum_probs=96.8
Q ss_pred cccCCcCceEEEeeCCCCCCC-CCCC-CCCCceEEeCCCCC-Ccccc-------CCCeeecCCCCCCccc-CccccCCCC
Q 039656 195 LEYLPEELRYLHWYGYPLRTL-PSNF-DPENLIALNLPYSK-VEQIW-------KGEKYLNVDGSAISHL-PSSIADLNK 263 (660)
Q Consensus 195 l~~l~~~Lr~L~l~~~~l~~l-P~~~-~l~~L~~L~L~~n~-l~~l~-------~~l~~L~l~~~~l~~l-p~si~~L~~ 263 (660)
+..++ +|++|++++|.+..+ |..+ .+++|++|++++|. +..+. +.++.|++++|.+..+ |..+.++++
T Consensus 52 ~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 52 FRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp TTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence 34444 455555555555444 2333 44555555555554 43331 2345555555555544 345666777
Q ss_pred CcEEEecCCCCcCCCCC-CCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccceec-chhhhcCCCCCeecccC
Q 039656 264 LEDLSFFGCKASVLPRV-LSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSG 340 (660)
Q Consensus 264 L~~L~l~~~~~~~lp~~-l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~ 340 (660)
|++|++++|.+..+|.. +.++++|++|+|++|.+..+|. .+..+++|+.|++++|.++.+ |..+..+++|+.|+|++
T Consensus 131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 77777777776666543 5667777777777777776554 366677777777777777744 56667777777777777
Q ss_pred ccCCCCCCC---CCcCCcEEecccC
Q 039656 341 CNMLRSLPE---LPIRLICLDARNC 362 (660)
Q Consensus 341 c~~l~~lp~---~~~~L~~L~l~~c 362 (660)
|+..+..|. .+++|+.|++.++
T Consensus 211 n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 211 NNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp SCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CcCCcCCHHHcccCcccCEEeccCC
Confidence 654432222 1455666666554
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=7.3e-18 Score=177.27 Aligned_cols=210 Identities=18% Similarity=0.234 Sum_probs=146.6
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDP 221 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 221 (660)
.++.+.+..+.+ ..+.+.+|.++++|++|++++|.+. ...|..+..++ +|++|++++|.++.+|..+.
T Consensus 55 ~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~- 122 (332)
T 2ft3_A 55 DTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKIS--------KIHEKAFSPLR-KLQKLYISKNHLVEIPPNLP- 122 (332)
T ss_dssp TCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCC--------EECGGGSTTCT-TCCEEECCSSCCCSCCSSCC-
T ss_pred CCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccC--------ccCHhHhhCcC-CCCEEECCCCcCCccCcccc-
Confidence 344444433333 3455667888888888888888764 23355677777 78888888888887776654
Q ss_pred CCceEEeCCCCCCcccc-------CCCeeecCCCCCCc---ccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEE
Q 039656 222 ENLIALNLPYSKVEQIW-------KGEKYLNVDGSAIS---HLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWME 291 (660)
Q Consensus 222 ~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~---~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~ 291 (660)
++|++|++++|.++.++ +.++.|++++|.++ ..|..+..+ +|++|++++|.+..+|..+. ++|++|+
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~ 199 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELH 199 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCB
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEE
Confidence 77888888888777654 35677778888776 335566666 78888888888777776554 6788888
Q ss_pred ccCCCCCCCC-cccCCCcccCccccccccceecch-hhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCcCCc
Q 039656 292 LRDCDLIKIP-QDIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCERLR 366 (660)
Q Consensus 292 Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~L~ 366 (660)
+++|.+..++ ..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|+. ..+|.. +++|+.|++.++ .++
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N-~l~ 277 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTN-NIT 277 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSS-CCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCC-CCC
Confidence 8888887754 567788888888888888886654 577788888888887754 467654 466777777765 344
Q ss_pred cc
Q 039656 367 TL 368 (660)
Q Consensus 367 ~l 368 (660)
.+
T Consensus 278 ~~ 279 (332)
T 2ft3_A 278 KV 279 (332)
T ss_dssp BC
T ss_pred cc
Confidence 43
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=8.3e-19 Score=205.40 Aligned_cols=197 Identities=23% Similarity=0.324 Sum_probs=127.7
Q ss_pred cCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCC-CCCCCC-CCCCceEEeCCCCCCc
Q 039656 158 LACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLR-TLPSNF-DPENLIALNLPYSKVE 235 (660)
Q Consensus 158 l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~-~lP~~~-~l~~L~~L~L~~n~l~ 235 (660)
..+..|.++++|+.|++++|.+.+ .+|..+..++ +|++|++++|.+. .+|..+ .+++|++|++++|++.
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~--------~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEG--------EIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCS--------CCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccHHHhcCCCCCEEECCCCcccC--------cCCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 344566677777777777776542 4566666666 6777777777764 556555 6677777777777766
Q ss_pred cc-------cCCCeeecCCCCCCc-ccCccccCCCCCcEEEecCCCCc-CCCC---------------------------
Q 039656 236 QI-------WKGEKYLNVDGSAIS-HLPSSIADLNKLEDLSFFGCKAS-VLPR--------------------------- 279 (660)
Q Consensus 236 ~l-------~~~l~~L~l~~~~l~-~lp~si~~L~~L~~L~l~~~~~~-~lp~--------------------------- 279 (660)
+. .+.++.|++++|.+. .+|..++++++|++|++++|.+. .+|.
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 33 235667777777776 56767777777777777776633 3332
Q ss_pred -------------------------------------------CCCCCCCCCEEEccCCCCCC-CCcccCCCcccCcccc
Q 039656 280 -------------------------------------------VLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVL 315 (660)
Q Consensus 280 -------------------------------------------~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L 315 (660)
.+..+++|+.|+|++|++++ +|..++.+++|+.|+|
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeC
Confidence 23345566777777777665 6667777777777777
Q ss_pred ccccce-ecchhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCc
Q 039656 316 SGNNFE-HLPASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCE 363 (660)
Q Consensus 316 ~~n~l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~ 363 (660)
++|+++ .+|..++.+++|+.|+|++|+..+.+|.. +++|+.|+++++.
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 777776 66777777777777777777766666654 3455666666553
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=9.5e-18 Score=176.38 Aligned_cols=206 Identities=17% Similarity=0.220 Sum_probs=170.4
Q ss_pred CcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCC-C
Q 039656 141 IAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSN-F 219 (660)
Q Consensus 141 ~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 219 (660)
..++.+.+..+.+ ..+.+.+|.++++|++|++++|.+. .+|..+. ++|++|++++|.++.+|.. +
T Consensus 78 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~---------~l~~~~~---~~L~~L~l~~n~i~~~~~~~~ 143 (332)
T 2ft3_A 78 QHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLV---------EIPPNLP---SSLVELRIHDNRIRKVPKGVF 143 (332)
T ss_dssp TTCCEEECCSSCC--CEECGGGSTTCTTCCEEECCSSCCC---------SCCSSCC---TTCCEEECCSSCCCCCCSGGG
T ss_pred CCCcEEECCCCcc--CccCHhHhhCcCCCCEEECCCCcCC---------ccCcccc---ccCCEEECCCCccCccCHhHh
Confidence 3455555554444 3456788999999999999999874 5666554 4899999999999999875 4
Q ss_pred -CCCCceEEeCCCCCCcc--ccC------CCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCC-CCCCCCCCCCE
Q 039656 220 -DPENLIALNLPYSKVEQ--IWK------GEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLP-RVLSGLSSLKW 289 (660)
Q Consensus 220 -~l~~L~~L~L~~n~l~~--l~~------~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp-~~l~~L~~L~~ 289 (660)
.+++|++|++++|.++. ..+ .++.|++++|.++.+|..+. ++|++|++++|.+..++ ..+.++++|+.
T Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYR 221 (332)
T ss_dssp SSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSC
T ss_pred CCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 89999999999999864 211 67899999999999998765 79999999999988776 67999999999
Q ss_pred EEccCCCCCCCCc-ccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCC-CC---------CcCCcEEe
Q 039656 290 MELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLP-EL---------PIRLICLD 358 (660)
Q Consensus 290 L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~---------~~~L~~L~ 358 (660)
|+|++|.+..+++ .++.+++|+.|++++|+++.+|..+..+++|+.|++++|+.. .+| .. ..+|+.|+
T Consensus 222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEE
T ss_pred EECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceE
Confidence 9999999999665 799999999999999999999999999999999999998754 443 22 34577788
Q ss_pred cccCc
Q 039656 359 ARNCE 363 (660)
Q Consensus 359 l~~c~ 363 (660)
+.+++
T Consensus 301 l~~N~ 305 (332)
T 2ft3_A 301 LFNNP 305 (332)
T ss_dssp CCSSS
T ss_pred eecCc
Confidence 77765
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=6.7e-18 Score=173.52 Aligned_cols=194 Identities=26% Similarity=0.381 Sum_probs=156.8
Q ss_pred CcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCC-CCCC-CCC
Q 039656 141 IAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYP-LRTL-PSN 218 (660)
Q Consensus 141 ~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~-l~~l-P~~ 218 (660)
..++.+.+..+.+ ..+.+.+|.++++|+.|++++|.+. ...|..+..++ +|++|++++|. ++.+ |..
T Consensus 32 ~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~--------~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 32 AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLA--------RIDAAAFTGLA-LLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCT-TCCEEECCSCTTCCCCCTTT
T ss_pred CCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccc--------eeCHhhcCCcc-CCCEEeCCCCCCccccCHHH
Confidence 3455555555444 3456677899999999999988874 23366777777 89999999997 8877 455
Q ss_pred C-CCCCceEEeCCCCCCcccc-------CCCeeecCCCCCCcccCcc-ccCCCCCcEEEecCCCCcCCCC-CCCCCCCCC
Q 039656 219 F-DPENLIALNLPYSKVEQIW-------KGEKYLNVDGSAISHLPSS-IADLNKLEDLSFFGCKASVLPR-VLSGLSSLK 288 (660)
Q Consensus 219 ~-~l~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~~lp~s-i~~L~~L~~L~l~~~~~~~lp~-~l~~L~~L~ 288 (660)
+ .+++|++|++++|.++.++ +.+++|++++|.++.+|.. ++.+++|++|++++|.+..+|. .+..+++|+
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 5 7899999999999888763 3678899999999988764 7889999999999999888776 488899999
Q ss_pred EEEccCCCCCCC-CcccCCCcccCccccccccceecch-hhhcCCCCCeecccCccCCC
Q 039656 289 WMELRDCDLIKI-PQDIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSGCNMLR 345 (660)
Q Consensus 289 ~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~ 345 (660)
.|+|++|.+.++ |..++.+++|+.|++++|.++.+|. .+..+++|+.|+|++|+...
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 999999999884 7788999999999999999997775 47889999999999987643
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=8.8e-18 Score=173.38 Aligned_cols=188 Identities=22% Similarity=0.248 Sum_probs=156.1
Q ss_pred cccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCC-CCC-CCCCceEEeCCCCCCcccc-
Q 039656 162 TFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLP-SNF-DPENLIALNLPYSKVEQIW- 238 (660)
Q Consensus 162 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP-~~~-~l~~L~~L~L~~n~l~~l~- 238 (660)
.++++++|+.+++.++.++ .+|.++ +++|++|++++|.++.++ ..+ .+++|++|++++|.++.++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~---------~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT---------ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCS---------SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC
T ss_pred cccccCCccEEECCCCCCC---------cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC
Confidence 4678899999999888764 566554 348999999999998775 445 8999999999999998764
Q ss_pred ----CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCC-CCCCCCCCCCEEEccCCCCCCCCcc-cCCCcccCc
Q 039656 239 ----KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLP-RVLSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEW 312 (660)
Q Consensus 239 ----~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp-~~l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~ 312 (660)
+.++.|++++|.++.+|..+..+++|++|++++|++..+| ..+.++++|++|+|++|.+..+|.. +..+++|+.
T Consensus 73 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 4788999999999999999999999999999999998887 4588999999999999999997764 688999999
Q ss_pred cccccccceecchhh-hcCCCCCeecccCccCCCCCCCC---CcCCcEEecccC
Q 039656 313 FVLSGNNFEHLPASI-KKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNC 362 (660)
Q Consensus 313 L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c 362 (660)
|+|++|+++.+|..+ ..+++|+.|+|++|+. ..+|.. ..+|+.|++.++
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEEECCSC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcC-CccChhhcccccCCeEEeCCC
Confidence 999999999988764 7899999999998764 577764 334556655543
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=4.5e-18 Score=194.85 Aligned_cols=179 Identities=21% Similarity=0.279 Sum_probs=143.3
Q ss_pred ecCCccccCCcCceEEEeeCCCCCCCCCCC-C--CCCceEEeCCCCCCcccc--------------CCCeeecCCCCCCc
Q 039656 190 HLDQGLEYLPEELRYLHWYGYPLRTLPSNF-D--PENLIALNLPYSKVEQIW--------------KGEKYLNVDGSAIS 252 (660)
Q Consensus 190 ~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~--l~~L~~L~L~~n~l~~l~--------------~~l~~L~l~~~~l~ 252 (660)
.+|..+..++.+|++|++++|.+..+|..+ . +.+|++|++++|.+.+.. ..++.|++++|.++
T Consensus 367 ~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446 (636)
T ss_dssp ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence 677778888833999999999988888877 3 348999999999887631 26788889999999
Q ss_pred ccCcccc-CCCCCcEEEecCCCCcCCCCCCCCC--------CCCCEEEccCCCCCCCCcccC--CCcccCccccccccce
Q 039656 253 HLPSSIA-DLNKLEDLSFFGCKASVLPRVLSGL--------SSLKWMELRDCDLIKIPQDIG--SLSSLEWFVLSGNNFE 321 (660)
Q Consensus 253 ~lp~si~-~L~~L~~L~l~~~~~~~lp~~l~~L--------~~L~~L~Ls~~~l~~lp~~l~--~l~~L~~L~L~~n~l~ 321 (660)
.+|..+. .+++|++|++++|.+..+|..+... ++|+.|+|++|.+..+|..+. .+++|+.|+|++|+++
T Consensus 447 ~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526 (636)
T ss_dssp SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCC
Confidence 8887654 5889999999999988888765442 289999999999999998887 8999999999999999
Q ss_pred ecchhhhcCCCCCeeccc------CccCCCCCCCC---CcCCcEEecccCcCCcccC
Q 039656 322 HLPASIKKLSRLTYLNLS------GCNMLRSLPEL---PIRLICLDARNCERLRTLQ 369 (660)
Q Consensus 322 ~lp~~i~~l~~L~~L~L~------~c~~l~~lp~~---~~~L~~L~l~~c~~L~~l~ 369 (660)
.+|..+..+++|+.|+|+ +|+..+.+|.. +++|+.|++++|.- ..++
T Consensus 527 ~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 899889999999999984 56667778865 57788888888753 5544
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=6.3e-18 Score=181.78 Aligned_cols=193 Identities=18% Similarity=0.154 Sum_probs=113.5
Q ss_pred cccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC--CCCCceEEeCCCCCCccc
Q 039656 160 CGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF--DPENLIALNLPYSKVEQI 237 (660)
Q Consensus 160 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~--~l~~L~~L~L~~n~l~~l 237 (660)
+.+|.++++|++|++++|.+.+ ..|..+..++ +|++|++++|.++.+|... .+++|++|++++|.++.+
T Consensus 86 ~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 86 TYAFAYAHTIQKLYMGFNAIRY--------LPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred hhhccCCCCcCEEECCCCCCCc--------CCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc
Confidence 3445555555555555554421 1222344444 5555555555555555432 455555555555555443
Q ss_pred c-------CCCeeecCCCCCCcccCccccCCCCCcEEEecCCC-------------------CcCCCCCCCCCCCCCEEE
Q 039656 238 W-------KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCK-------------------ASVLPRVLSGLSSLKWME 291 (660)
Q Consensus 238 ~-------~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~-------------------~~~lp~~l~~L~~L~~L~ 291 (660)
+ +.++.|++++|.++.++ ++.+++|+.|++++|. +..+|. ..+++|+.|+
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ 232 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILK 232 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEE
T ss_pred ChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEE
Confidence 2 23455555555555443 2233333333333322 222221 1235677777
Q ss_pred ccCCCCCCCCcccCCCcccCccccccccceec-chhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCcCCcc
Q 039656 292 LRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCERLRT 367 (660)
Q Consensus 292 Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~L~~ 367 (660)
+++|.+.+. +.++.+++|++|++++|.++.+ |..+..+++|+.|+|++|+. ..+|.. +++|+.|++++| .++.
T Consensus 233 l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 233 LQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp CCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEECSSSCCTTCCEEECCSS-CCCC
T ss_pred CCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccCcccCCCCCCCEEECCCC-ccee
Confidence 777777765 4688899999999999999955 77899999999999999865 445543 688999999988 4443
Q ss_pred c
Q 039656 368 L 368 (660)
Q Consensus 368 l 368 (660)
+
T Consensus 310 ~ 310 (390)
T 3o6n_A 310 V 310 (390)
T ss_dssp C
T ss_pred c
Confidence 3
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=7.2e-18 Score=191.81 Aligned_cols=77 Identities=22% Similarity=0.192 Sum_probs=62.1
Q ss_pred CCCCEEEccCCCCCCCCcccCCCcccCcccccccccee-cchhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecc
Q 039656 285 SSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEH-LPASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDAR 360 (660)
Q Consensus 285 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~ 360 (660)
++|+.|+|++|.+.+. ..++.+++|+.|+|++|.+.. .|..++.+++|+.|+|++|...+ +|.. +++|+.|+++
T Consensus 232 ~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 232 VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp SCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECC
Confidence 4567777777776663 568889999999999999995 47789999999999999987544 5543 6799999999
Q ss_pred cCc
Q 039656 361 NCE 363 (660)
Q Consensus 361 ~c~ 363 (660)
+|.
T Consensus 310 ~N~ 312 (597)
T 3oja_B 310 HNH 312 (597)
T ss_dssp SSC
T ss_pred CCC
Confidence 873
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=1.3e-17 Score=175.12 Aligned_cols=206 Identities=16% Similarity=0.251 Sum_probs=168.5
Q ss_pred CcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCC-C
Q 039656 141 IAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSN-F 219 (660)
Q Consensus 141 ~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 219 (660)
..++.+.+..+.+ ..+.+.+|.++++|++|++++|.+. .+|..+. ++|++|++++|.+..++.. +
T Consensus 76 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~---------~l~~~~~---~~L~~L~l~~n~l~~~~~~~~ 141 (330)
T 1xku_A 76 KNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLK---------ELPEKMP---KTLQELRVHENEITKVRKSVF 141 (330)
T ss_dssp TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCS---------BCCSSCC---TTCCEEECCSSCCCBBCHHHH
T ss_pred CCCCEEECCCCcC--CeeCHHHhcCCCCCCEEECCCCcCC---------ccChhhc---ccccEEECCCCcccccCHhHh
Confidence 4456555554444 3456778999999999999999874 5565554 4899999999999988865 3
Q ss_pred -CCCCceEEeCCCCCCcc--c-------cCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCC-CCCCCCCCCCC
Q 039656 220 -DPENLIALNLPYSKVEQ--I-------WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVL-PRVLSGLSSLK 288 (660)
Q Consensus 220 -~l~~L~~L~L~~n~l~~--l-------~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~l-p~~l~~L~~L~ 288 (660)
.+++|++|++++|.+.. . .+.++.|++++|.++.+|..+. ++|++|++++|.+..+ |..+.++++|+
T Consensus 142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLA 219 (330)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 89999999999999864 2 3578999999999999998765 8999999999998776 67799999999
Q ss_pred EEEccCCCCCCCCc-ccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCC-C---------CcCCcEE
Q 039656 289 WMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPE-L---------PIRLICL 357 (660)
Q Consensus 289 ~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~-~---------~~~L~~L 357 (660)
.|+|++|.+.+++. .+..+++|+.|++++|.++.+|..+..+++|++|++++|+.. .+|. . ..+++.|
T Consensus 220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEE
T ss_pred EEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccce
Confidence 99999999999654 789999999999999999999999999999999999998754 4442 2 2456666
Q ss_pred ecccCc
Q 039656 358 DARNCE 363 (660)
Q Consensus 358 ~l~~c~ 363 (660)
++.+.+
T Consensus 299 ~l~~N~ 304 (330)
T 1xku_A 299 SLFSNP 304 (330)
T ss_dssp ECCSSS
T ss_pred EeecCc
Confidence 666554
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.75 E-value=3.5e-17 Score=180.76 Aligned_cols=210 Identities=22% Similarity=0.279 Sum_probs=138.4
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCC-C-
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSN-F- 219 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~-~- 219 (660)
.++.+.+..+.+ ..+.+.+|.++++|+.|++++|.+. ...|..+..++ +|++|++++|.++.+|.. +
T Consensus 33 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~--------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 33 ETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVS--------AVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp TCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCC--------EECTTTTTTCT-TCCEEECCSSCCCSCCTTSST
T ss_pred CCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccC--------EeChhhhhCCc-cCCEEECCCCcCCccCccccc
Confidence 344444444433 3455678888999999999888764 23466777777 888888888888888865 3
Q ss_pred CCCCceEEeCCCCCCcccc-------CCCeeecCCCCCCccc-CccccCCCCCcEEEecCCCCcCCCC-CCCCCCCCCEE
Q 039656 220 DPENLIALNLPYSKVEQIW-------KGEKYLNVDGSAISHL-PSSIADLNKLEDLSFFGCKASVLPR-VLSGLSSLKWM 290 (660)
Q Consensus 220 ~l~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~~l-p~si~~L~~L~~L~l~~~~~~~lp~-~l~~L~~L~~L 290 (660)
.+++|++|+|++|++..+. +.++.|++++|.+..+ |..+..+++|+.|++++|.+..+|. .+.++++|+.|
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 7888888888888887663 3567888888888766 4467788888888888887776654 35566666666
Q ss_pred EccCCCCCCCCc-ccCCCc------------------------ccCccccccccceecch-hhhcCCCCCeecccCccCC
Q 039656 291 ELRDCDLIKIPQ-DIGSLS------------------------SLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSGCNML 344 (660)
Q Consensus 291 ~Ls~~~l~~lp~-~l~~l~------------------------~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~l 344 (660)
+|++|.+..++. .+..++ +|+.|++++|+++.+|. .+..+++|+.|+|++|+..
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 666666655332 344444 45555555555555553 4566666777777666544
Q ss_pred CCCCCC---CcCCcEEecccC
Q 039656 345 RSLPEL---PIRLICLDARNC 362 (660)
Q Consensus 345 ~~lp~~---~~~L~~L~l~~c 362 (660)
...+.. +++|+.|++.++
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSS
T ss_pred ccChhhccccccCCEEECCCC
Confidence 332222 455666666554
No 26
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=1.1e-16 Score=181.74 Aligned_cols=153 Identities=29% Similarity=0.326 Sum_probs=74.3
Q ss_pred CceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc---CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCC
Q 039656 201 ELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW---KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVL 277 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~---~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~l 277 (660)
+|++|++++|.++.+|. .+.+|+.|++++|+++.++ +++++|++++|.++.+|.. +.+|+.|++++|.+..+
T Consensus 102 ~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 102 GLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSL 176 (622)
T ss_dssp TCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCC
T ss_pred CCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCC
Confidence 44555555554444444 3344444445444444433 2344444555555444432 22333334444433333
Q ss_pred CCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCCCcCCcEE
Q 039656 278 PRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPELPIRLICL 357 (660)
Q Consensus 278 p~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~~~~L~~L 357 (660)
| ..+++|+.|++++|.+..+|.. +++|+.|++++|.++.+|. .+++|+.|+|++|. +..+|..+++|+.|
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L 246 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNR-LTSLPVLPSELKEL 246 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEE
T ss_pred c---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC---CCCCCCEEEccCCc-cCcCCCCCCcCcEE
Confidence 3 2235566666666666665543 2445555555555555543 23556666666553 33455555666666
Q ss_pred ecccCcCCcccC
Q 039656 358 DARNCERLRTLQ 369 (660)
Q Consensus 358 ~l~~c~~L~~l~ 369 (660)
+++++ .++.++
T Consensus 247 ~Ls~N-~L~~lp 257 (622)
T 3g06_A 247 MVSGN-RLTSLP 257 (622)
T ss_dssp ECCSS-CCSCCC
T ss_pred ECCCC-CCCcCC
Confidence 66554 344443
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=1.1e-17 Score=183.52 Aligned_cols=107 Identities=20% Similarity=0.183 Sum_probs=80.5
Q ss_pred CCCcEEEecCCCCcC-CCCCCCCCCCCCEEEccCCCCCCC-CcccCCCcccCccccccccceec-chhhhcCCCCCeecc
Q 039656 262 NKLEDLSFFGCKASV-LPRVLSGLSSLKWMELRDCDLIKI-PQDIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNL 338 (660)
Q Consensus 262 ~~L~~L~l~~~~~~~-lp~~l~~L~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L 338 (660)
++|++|++++|.+.. .|..+..+++|+.|+|++|.+.++ |..++.+++|++|+|++|.++.+ |..+..+++|+.|+|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 467777777777554 466688888888888888888884 56788888888888888888865 566788888888888
Q ss_pred cCccCCCCCCCC---CcCCcEEecccCcCCcccC
Q 039656 339 SGCNMLRSLPEL---PIRLICLDARNCERLRTLQ 369 (660)
Q Consensus 339 ~~c~~l~~lp~~---~~~L~~L~l~~c~~L~~l~ 369 (660)
++|...+..|.. +++|+.|++.++ .++.++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 387 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTN-QLKSVP 387 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred CCCcccccChhhccccccccEEECCCC-ccccCC
Confidence 888776665643 577888888875 344443
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=3.5e-18 Score=177.95 Aligned_cols=185 Identities=16% Similarity=0.282 Sum_probs=133.2
Q ss_pred ccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc----
Q 039656 163 FTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW---- 238 (660)
Q Consensus 163 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~---- 238 (660)
+.++++|+.|++.+|.+. .++ .+..++ +|++|++++|.+..+|....+++|++|++++|.++.++
T Consensus 37 ~~~l~~L~~L~l~~~~i~---------~l~-~~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT---------TIE-GVQYLN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCC---------CCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTT
T ss_pred HHHcCCcCEEEeeCCCcc---------Cch-hhhccC-CCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcC
Confidence 345667777777766653 233 455565 77777777777777766226777777777777776553
Q ss_pred -CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCcccccc
Q 039656 239 -KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSG 317 (660)
Q Consensus 239 -~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~ 317 (660)
+.++.|++++|.++.+|. +..+++|++|++++|.+..++. +..+++|+.|+|++|.+..++. +..+++|+.|++++
T Consensus 106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD 182 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC
Confidence 456777777777777765 7888888888888888877776 7788888888888888888766 78888888888888
Q ss_pred ccceecchhhhcCCCCCeecccCccCCCCCCCC--CcCCcEEecccCc
Q 039656 318 NNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL--PIRLICLDARNCE 363 (660)
Q Consensus 318 n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~ 363 (660)
|.++.++. +..+++|+.|+|++|+.. .+|.+ +++|+.|++.+++
T Consensus 183 n~l~~~~~-l~~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 183 NKISDISP-LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp SCCCCCGG-GGGCTTCCEEECTTSCCC-BCGGGTTCTTCCEEEEEEEE
T ss_pred CccCcChh-hcCCCCCCEEEccCCccC-ccccccCCCCCCEEEccCCe
Confidence 88887775 778888888888887654 33322 5667777776653
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=2.8e-17 Score=180.14 Aligned_cols=212 Identities=19% Similarity=0.200 Sum_probs=152.5
Q ss_pred CcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCC-CCCC
Q 039656 141 IAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTL-PSNF 219 (660)
Q Consensus 141 ~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~l-P~~~ 219 (660)
..++.+.+..+.+ ..+.+.+|.++++|++|++++|.+.+ ...+..+..++ +|++|++++|.+..+ |..+
T Consensus 30 ~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~-------~i~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGL-------VIRNNTFRGLS-SLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp TTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTC-------EECTTTTTTCT-TCCEEECTTCTTCEECTTTT
T ss_pred CccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccc-------eECcccccccc-cCCEEeCCCCccCccChhhc
Confidence 3455555544444 34556778888888888888887631 22244566776 888888888888665 5556
Q ss_pred -CCCCceEEeCCCCCCccc---------cCCCeeecCCCCCCccc-Ccc-ccCCCCCcEEEecCCCCcCCC-CCCC----
Q 039656 220 -DPENLIALNLPYSKVEQI---------WKGEKYLNVDGSAISHL-PSS-IADLNKLEDLSFFGCKASVLP-RVLS---- 282 (660)
Q Consensus 220 -~l~~L~~L~L~~n~l~~l---------~~~l~~L~l~~~~l~~l-p~s-i~~L~~L~~L~l~~~~~~~lp-~~l~---- 282 (660)
.+++|++|++++|++++. .+.++.|++++|.+..+ |.. ++++++|++|++++|.+..++ ..+.
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 788888888888888651 24678888888888876 444 778888888888888755432 2121
Q ss_pred ------------------------------CC------------------------------------------------
Q 039656 283 ------------------------------GL------------------------------------------------ 284 (660)
Q Consensus 283 ------------------------------~L------------------------------------------------ 284 (660)
.+
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 11
Q ss_pred ---------------CCCCEEEccCCCCCC-CCcccCCCcccCccccccccceec-chhhhcCCCCCeecccCccCCCCC
Q 039656 285 ---------------SSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRSL 347 (660)
Q Consensus 285 ---------------~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~l 347 (660)
++|+.|++++|.+.+ .|..++.+++|++|++++|.++.+ |..+..+++|+.|+|++|...+..
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence 345555555555555 466789999999999999999966 568899999999999999875555
Q ss_pred CCC---CcCCcEEecccC
Q 039656 348 PEL---PIRLICLDARNC 362 (660)
Q Consensus 348 p~~---~~~L~~L~l~~c 362 (660)
|.. +++|+.|++++|
T Consensus 340 ~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp GGGGTTCTTCCEEECCSS
T ss_pred hhHhcCcccCCEEECCCC
Confidence 544 688999999887
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=182.53 Aligned_cols=167 Identities=19% Similarity=0.247 Sum_probs=91.4
Q ss_pred CccEEEEecCCCCCcccCCcceecCC-ccccCCcCceEEEeeCCCCCCCCC-CC-CCCCceEEeCCCCCCcccc------
Q 039656 168 NLRLLKFYMPNRDGFSIMSSKVHLDQ-GLEYLPEELRYLHWYGYPLRTLPS-NF-DPENLIALNLPYSKVEQIW------ 238 (660)
Q Consensus 168 ~Lr~L~l~~n~~~~~~~~~~~~~lp~-~l~~l~~~Lr~L~l~~~~l~~lP~-~~-~l~~L~~L~L~~n~l~~l~------ 238 (660)
+|+.|++++|.+. .++. .+..++ +|++|++++|.++.++. .+ .+++|++|++++|+++.++
T Consensus 53 ~L~~L~l~~n~i~---------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 53 AVKSLDLSNNRIT---------YISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp TCCEEECTTSCCC---------EECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred cCcEEECCCCcCc---------ccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 4555555555442 2222 344444 55555555555544432 23 4555555555555554442
Q ss_pred -CCCeeecCCCCCCcccCc--cccCCCCCcEEEecCCC-CcCC-CCCCCCCCCCCEEEccCCCCCC-CCcccCCCcccCc
Q 039656 239 -KGEKYLNVDGSAISHLPS--SIADLNKLEDLSFFGCK-ASVL-PRVLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEW 312 (660)
Q Consensus 239 -~~l~~L~l~~~~l~~lp~--si~~L~~L~~L~l~~~~-~~~l-p~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~ 312 (660)
+.+++|++++|.++.+|. .+..+++|++|++++|. +..+ |..+.++++|++|++++|.+.+ .|..++.+++|++
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 244555555555555554 45666666666666663 4443 3445666666666666666665 3556666666666
Q ss_pred cccccccceecchhh-hcCCCCCeecccCccCC
Q 039656 313 FVLSGNNFEHLPASI-KKLSRLTYLNLSGCNML 344 (660)
Q Consensus 313 L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~~l 344 (660)
|++++|.+..+|..+ ..+++|+.|++++|...
T Consensus 203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred ecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 666666666555443 34566666666665543
No 31
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=3.7e-18 Score=178.44 Aligned_cols=204 Identities=14% Similarity=0.194 Sum_probs=163.0
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDP 221 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 221 (660)
.++.+.+..+.+ ..+.+.+|.++++|+.|++++|.+. ..+. +..++ +|++|++++|.++.+|. .
T Consensus 35 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~---------~~~~-~~~l~-~L~~L~Ls~n~l~~l~~---~ 98 (317)
T 3o53_A 35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLY---------ETLD-LESLS-TLRTLDLNNNYVQELLV---G 98 (317)
T ss_dssp GCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCE---------EEEE-ETTCT-TCCEEECCSSEEEEEEE---C
T ss_pred CCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCC---------cchh-hhhcC-CCCEEECcCCccccccC---C
Confidence 455555544444 3456678999999999999999874 2222 67777 89999999999887773 3
Q ss_pred CCceEEeCCCCCCccc----cCCCeeecCCCCCCcccCc-cccCCCCCcEEEecCCCCcCCC-CCC-CCCCCCCEEEccC
Q 039656 222 ENLIALNLPYSKVEQI----WKGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKASVLP-RVL-SGLSSLKWMELRD 294 (660)
Q Consensus 222 ~~L~~L~L~~n~l~~l----~~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~lp-~~l-~~L~~L~~L~Ls~ 294 (660)
++|++|++++|.++.+ .++++.|++++|.++.++. .++.+++|++|++++|.+..++ ..+ ..+++|++|+|++
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 8999999999999876 3568999999999998754 7888999999999999987653 444 4789999999999
Q ss_pred CCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCc
Q 039656 295 CDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCE 363 (660)
Q Consensus 295 ~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~ 363 (660)
|.+..+|.. ..+++|++|++++|.++.+|..+..+++|+.|+|++|+.. .+|.. +++|+.|++.+++
T Consensus 179 N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 179 NFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp SCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred CcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCC
Confidence 999988643 4589999999999999999888999999999999998654 66754 4677777777654
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=4.6e-18 Score=188.47 Aligned_cols=204 Identities=14% Similarity=0.175 Sum_probs=166.7
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDP 221 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 221 (660)
.++.+.+..+.+ ..+.+.+|.++++|++|+|++|.+++ .++ +..++ +|++|++++|.++.+|..
T Consensus 35 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~---------~~~-l~~l~-~L~~L~Ls~N~l~~l~~~--- 98 (487)
T 3oja_A 35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYE---------TLD-LESLS-TLRTLDLNNNYVQELLVG--- 98 (487)
T ss_dssp GCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEE---------EEE-CTTCT-TCCEEECCSSEEEEEEEC---
T ss_pred CccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCC---------Ccc-cccCC-CCCEEEecCCcCCCCCCC---
Confidence 566665555544 34667889999999999999998742 222 77777 999999999999887743
Q ss_pred CCceEEeCCCCCCcccc----CCCeeecCCCCCCccc-CccccCCCCCcEEEecCCCCcC-CCCCCC-CCCCCCEEEccC
Q 039656 222 ENLIALNLPYSKVEQIW----KGEKYLNVDGSAISHL-PSSIADLNKLEDLSFFGCKASV-LPRVLS-GLSSLKWMELRD 294 (660)
Q Consensus 222 ~~L~~L~L~~n~l~~l~----~~l~~L~l~~~~l~~l-p~si~~L~~L~~L~l~~~~~~~-lp~~l~-~L~~L~~L~Ls~ 294 (660)
++|++|++++|.+..++ ++++.|++++|.++.+ |..++.+++|++|++++|.+.. .|..+. .+++|+.|+|++
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 89999999999998763 5689999999999977 5578999999999999999776 455565 799999999999
Q ss_pred CCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCc
Q 039656 295 CDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCE 363 (660)
Q Consensus 295 ~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~ 363 (660)
|.+.++|. ...+++|+.|+|++|.++.+|..+..+++|+.|+|++|... .+|.. +++|+.|++.+++
T Consensus 179 N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 179 NFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred Cccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCC
Confidence 99998864 44699999999999999999988999999999999998755 56654 4677777777654
No 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.7e-17 Score=165.93 Aligned_cols=186 Identities=17% Similarity=0.182 Sum_probs=136.9
Q ss_pred CccEEEEecCCCCCcccCCcceecCC-ccccCCcCceEEEeeCCC-CCCCCC-CC-CCCCceEEeCCC-CCCccccC---
Q 039656 168 NLRLLKFYMPNRDGFSIMSSKVHLDQ-GLEYLPEELRYLHWYGYP-LRTLPS-NF-DPENLIALNLPY-SKVEQIWK--- 239 (660)
Q Consensus 168 ~Lr~L~l~~n~~~~~~~~~~~~~lp~-~l~~l~~~Lr~L~l~~~~-l~~lP~-~~-~l~~L~~L~L~~-n~l~~l~~--- 239 (660)
+|+.|++++|.+. .+|. .+..++ +|++|++++|. ++.+|. .+ .+++|++|++++ |+++.+++
T Consensus 32 ~l~~L~l~~n~l~---------~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 32 STQTLKLIETHLR---------TIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TCCEEEEESCCCS---------EECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred cccEEEEeCCcce---------EECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 6777777776653 3333 455555 67777777775 666665 33 667777777776 66665532
Q ss_pred ----CCeeecCCCCCCcccCccccCCCCCc---EEEecCC-CCcCCCCC-CCCCCCCC-EEEccCCCCCCCCcccCCCcc
Q 039656 240 ----GEKYLNVDGSAISHLPSSIADLNKLE---DLSFFGC-KASVLPRV-LSGLSSLK-WMELRDCDLIKIPQDIGSLSS 309 (660)
Q Consensus 240 ----~l~~L~l~~~~l~~lp~si~~L~~L~---~L~l~~~-~~~~lp~~-l~~L~~L~-~L~Ls~~~l~~lp~~l~~l~~ 309 (660)
.++.|++++|.++.+|. ++.+++|+ +|++++| .+..+|.. +.++++|+ .|++++|.+..+|......++
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK 180 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCE
T ss_pred CCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCC
Confidence 45666777777777887 77888887 9999999 78887764 78899999 999999999988876555589
Q ss_pred cCccccccc-cceecch-hhhcC-CCCCeecccCccCCCCCCC-CCcCCcEEecccCcCC
Q 039656 310 LEWFVLSGN-NFEHLPA-SIKKL-SRLTYLNLSGCNMLRSLPE-LPIRLICLDARNCERL 365 (660)
Q Consensus 310 L~~L~L~~n-~l~~lp~-~i~~l-~~L~~L~L~~c~~l~~lp~-~~~~L~~L~l~~c~~L 365 (660)
|+.|++++| .++.+|. .+..+ ++|+.|++++|+. ..+|. .+++|+.|++.++..|
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCCTTCTTCSEEECTTC---
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCChhHhccCceeeccCccCC
Confidence 999999999 4998864 47888 9999999998765 45664 4888999998887654
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=4.4e-17 Score=178.86 Aligned_cols=192 Identities=23% Similarity=0.302 Sum_probs=164.5
Q ss_pred CCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCC-CCC-CCCCceEEeCCCCCCccccC-----
Q 039656 167 SNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLP-SNF-DPENLIALNLPYSKVEQIWK----- 239 (660)
Q Consensus 167 ~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP-~~~-~l~~L~~L~L~~n~l~~l~~----- 239 (660)
++|+.|++++|.+. ...+..+..++ +|++|++++|.+..++ ..+ .+++|++|+|++|+++.+++
T Consensus 75 ~~l~~L~L~~n~i~--------~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ--------MIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp TTCSEEECCSSCCC--------EECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred CCccEEECcCCcCc--------eECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 68999999999875 24466788888 9999999999998877 455 89999999999999988754
Q ss_pred --CCeeecCCCCCCcccCc-cccCCCCCcEEEecCCC-CcCCCC-CCCCCCCCCEEEccCCCCCCCCcccCCCcccCccc
Q 039656 240 --GEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCK-ASVLPR-VLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFV 314 (660)
Q Consensus 240 --~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~-~~~lp~-~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~ 314 (660)
+++.|++++|.++.+|. .+.++++|++|++++|. +..+|. .+.++++|++|+|++|++.++| .+..+++|+.|+
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 224 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELE 224 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEE
Confidence 67999999999999886 78999999999999966 666665 5889999999999999999987 588999999999
Q ss_pred cccccceec-chhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCcCCcccC
Q 039656 315 LSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCERLRTLQ 369 (660)
Q Consensus 315 L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~L~~l~ 369 (660)
|++|.++.+ |..+..+++|+.|+|++|......|.. +++|+.|++.++ .++.++
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccC
Confidence 999999966 677999999999999999877665644 578999999887 455444
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=5.8e-17 Score=182.94 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=52.7
Q ss_pred CCCCCCCEEEccCCCCCC-CCcccCCCcccCccccccccceecc---hhhhcCCCCCeecccCccCCCCCCCC----CcC
Q 039656 282 SGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSGNNFEHLP---ASIKKLSRLTYLNLSGCNMLRSLPEL----PIR 353 (660)
Q Consensus 282 ~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp---~~i~~l~~L~~L~L~~c~~l~~lp~~----~~~ 353 (660)
..+++|++|++++|.+.+ +|..++.+++|+.|++++|+++.+| ..+..+++|+.|++++|...+.+|.. +++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456677777777777776 6666777777777777777777543 44667777777777776665545532 345
Q ss_pred CcEEecccC
Q 039656 354 LICLDARNC 362 (660)
Q Consensus 354 L~~L~l~~c 362 (660)
|+.|++++|
T Consensus 430 L~~L~l~~n 438 (562)
T 3a79_B 430 ILVLNLSSN 438 (562)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555554
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=8.2e-17 Score=164.16 Aligned_cols=150 Identities=27% Similarity=0.405 Sum_probs=92.9
Q ss_pred ccccCCcCceEEEeeCCCCCCCCCCC--CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCc-cccCCCCCcEEEec
Q 039656 194 GLEYLPEELRYLHWYGYPLRTLPSNF--DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPS-SIADLNKLEDLSFF 270 (660)
Q Consensus 194 ~l~~l~~~Lr~L~l~~~~l~~lP~~~--~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~ 270 (660)
.+..++ +|++|++++|.+..+|... .+++|++|++++|. ++.+|. .+..+++|++|+++
T Consensus 56 ~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-----------------l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 56 AFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-----------------LQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp SSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-----------------CCCCCTTTTTTCSSCCEEECC
T ss_pred HhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-----------------CCcCCHhHcccccCCCEEECC
Confidence 344444 5555555555555555432 45555555555554 444543 34667777777777
Q ss_pred CCCCcCCCC-CCCCCCCCCEEEccCCCCCCCCcc-cCCCcccCccccccccceecchh-hhcCCCCCeecccCccCCCCC
Q 039656 271 GCKASVLPR-VLSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFEHLPAS-IKKLSRLTYLNLSGCNMLRSL 347 (660)
Q Consensus 271 ~~~~~~lp~-~l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~l~~l 347 (660)
+|.+..+|. .+..+++|++|+|++|.+..+|.. ++.+++|+.|++++|.++.+|.. +..+++|+.|+|++|+.. .+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 196 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RV 196 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cC
Confidence 777666654 356777777777777777776654 67777777777777777766643 567777777777776543 34
Q ss_pred CC-C---CcCCcEEecccC
Q 039656 348 PE-L---PIRLICLDARNC 362 (660)
Q Consensus 348 p~-~---~~~L~~L~l~~c 362 (660)
|. . +++|+.|++.++
T Consensus 197 ~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred CHHHhccccCCCEEEecCC
Confidence 43 2 455666666554
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=2.2e-17 Score=168.88 Aligned_cols=184 Identities=20% Similarity=0.247 Sum_probs=119.0
Q ss_pred CccEEEEecCCCCCcccCCcceecC-CccccCCcCceEEEeeCCCCCCCCC-CC-CCCCceEEeCCCCCCcccc------
Q 039656 168 NLRLLKFYMPNRDGFSIMSSKVHLD-QGLEYLPEELRYLHWYGYPLRTLPS-NF-DPENLIALNLPYSKVEQIW------ 238 (660)
Q Consensus 168 ~Lr~L~l~~n~~~~~~~~~~~~~lp-~~l~~l~~~Lr~L~l~~~~l~~lP~-~~-~l~~L~~L~L~~n~l~~l~------ 238 (660)
+|+.|++++|.+. .++ ..+..++ +|++|++++|.+..++. .+ .+++|++|++++|.++.++
T Consensus 29 ~l~~L~ls~n~l~---------~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 29 STKNLDLSFNPLR---------HLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TCCEEECTTCCCC---------EECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CccEEECCCCccc---------ccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 4666666666553 222 2445555 66666666666655554 23 5666666666666665543
Q ss_pred -CCCeeecCCCCCCcccCc-cccCCCCCcEEEecCCCCcC--CCCCCCCCCCCCEEEccCCCCCCCC-cccCCCcccC--
Q 039656 239 -KGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKASV--LPRVLSGLSSLKWMELRDCDLIKIP-QDIGSLSSLE-- 311 (660)
Q Consensus 239 -~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~--lp~~l~~L~~L~~L~Ls~~~l~~lp-~~l~~l~~L~-- 311 (660)
+.++.|++++|.+..++. .++.+++|++|++++|.+.. +|..+.++++|++|+|++|.+..++ ..+..+.+|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 245666666666666654 57778888888888887665 5777778888888888888887754 4566666666
Q ss_pred --ccccccccceecchhhhcCCCCCeecccCccCCCCCCC-C---CcCCcEEecccC
Q 039656 312 --WFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPE-L---PIRLICLDARNC 362 (660)
Q Consensus 312 --~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~-~---~~~L~~L~l~~c 362 (660)
.|++++|.++.+|.......+|+.|+|++|... .+|. . +++|+.|++.++
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSS
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCC
Confidence 677778888877766666667888888877643 4443 2 466777777643
No 38
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=1e-16 Score=163.39 Aligned_cols=172 Identities=25% Similarity=0.327 Sum_probs=133.4
Q ss_pred CccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCC-CC-CCCCceEEeCCCCCCccccCCCeeec
Q 039656 168 NLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPS-NF-DPENLIALNLPYSKVEQIWKGEKYLN 245 (660)
Q Consensus 168 ~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~-~~-~l~~L~~L~L~~n~l~~l~~~l~~L~ 245 (660)
+++.++++++.++ .+|..+ +.+|+.|++++|.++.+|. .+ .+++|++|++++|.++
T Consensus 17 ~~~~l~~~~~~l~---------~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------- 74 (270)
T 2o6q_A 17 NKNSVDCSSKKLT---------AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---------- 74 (270)
T ss_dssp TTTEEECTTSCCS---------SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS----------
T ss_pred CCCEEEccCCCCC---------ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC----------
Confidence 4567777766653 345433 3478888888888877775 34 6777877777776654
Q ss_pred CCCCCCcccCcc-ccCCCCCcEEEecCCCCcCCCCC-CCCCCCCCEEEccCCCCCCCCc-ccCCCcccCcccccccccee
Q 039656 246 VDGSAISHLPSS-IADLNKLEDLSFFGCKASVLPRV-LSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEH 322 (660)
Q Consensus 246 l~~~~l~~lp~s-i~~L~~L~~L~l~~~~~~~lp~~-l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~ 322 (660)
.+|.. +..+++|++|++++|.+..+|.. +.++++|++|+|++|.+..+|. .++.+++|++|+|++|.++.
T Consensus 75 -------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 75 -------TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp -------CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred -------eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence 45544 47899999999999999888754 6889999999999999999665 57899999999999999998
Q ss_pred cchh-hhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCcCCcccC
Q 039656 323 LPAS-IKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCERLRTLQ 369 (660)
Q Consensus 323 lp~~-i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~L~~l~ 369 (660)
+|.. +..+++|+.|+|++|......+.. +++|+.|++.++ .++.++
T Consensus 148 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 197 (270)
T 2o6q_A 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVP 197 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCC
Confidence 8865 789999999999998755443332 578999999887 455444
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=5.8e-17 Score=184.39 Aligned_cols=98 Identities=26% Similarity=0.270 Sum_probs=58.8
Q ss_pred cEEEecCCCCcCCCCC-CCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceec-chhhhcCCCCCeecccCcc
Q 039656 265 EDLSFFGCKASVLPRV-LSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCN 342 (660)
Q Consensus 265 ~~L~l~~~~~~~lp~~-l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~ 342 (660)
+.|++++|.+..++.. +.++++|++|++++|.+..+|..++.+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 3344444443333332 5566667777777776666666666667777777777666644 4456666777777777666
Q ss_pred CCCCCCCC----CcCCcEEecccC
Q 039656 343 MLRSLPEL----PIRLICLDARNC 362 (660)
Q Consensus 343 ~l~~lp~~----~~~L~~L~l~~c 362 (660)
..+.+|.. +++|+.|++.++
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSS
T ss_pred cccccchhhhhccCcCCEEECCCC
Confidence 55555432 456666666554
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.72 E-value=6.5e-17 Score=177.73 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=60.6
Q ss_pred CCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCcccccccc
Q 039656 240 GEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNN 319 (660)
Q Consensus 240 ~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~ 319 (660)
.++.|++++|.++.+| ++.+++|+.|++++|.+..++ +..+++|+.|++++|++.++| ++.+++|+.|++++|+
T Consensus 171 ~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 171 QLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp TCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC
T ss_pred cCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCc
Confidence 3455555555555554 455555555555555554442 555555555555555555554 5555555555555555
Q ss_pred ceecch-hhhcCC-------CCCeecccCccCCCCCCCC-CcCCcEEecccCcCCcccC
Q 039656 320 FEHLPA-SIKKLS-------RLTYLNLSGCNMLRSLPEL-PIRLICLDARNCERLRTLQ 369 (660)
Q Consensus 320 l~~lp~-~i~~l~-------~L~~L~L~~c~~l~~lp~~-~~~L~~L~l~~c~~L~~l~ 369 (660)
++.+|. .+..+. +|+.|++++|+.++.+|.. +++|+.|++++|..+..++
T Consensus 245 l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 245 LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceec
Confidence 554441 111111 2333344444444444321 3455555555554444433
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=5.7e-17 Score=167.31 Aligned_cols=168 Identities=19% Similarity=0.225 Sum_probs=135.9
Q ss_pred CCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccC------C
Q 039656 167 SNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWK------G 240 (660)
Q Consensus 167 ~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~------~ 240 (660)
++|+.|++++|.+. ...+..+..++ +|++|++++|.++.+|....+++|++|++++|+++.++. .
T Consensus 31 ~~l~~L~L~~N~l~--------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 101 (290)
T 1p9a_G 31 KDTTILHLSENLLY--------TFSLATLMPYT-RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA 101 (290)
T ss_dssp TTCCEEECTTSCCS--------EEEGGGGTTCT-TCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTT
T ss_pred CCCCEEEcCCCcCC--------ccCHHHhhcCC-CCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCC
Confidence 46777777777764 12344566666 777777777777777665567777777777777776543 4
Q ss_pred CeeecCCCCCCcccC-ccccCCCCCcEEEecCCCCcCCCCC-CCCCCCCCEEEccCCCCCCCCcc-cCCCcccCcccccc
Q 039656 241 EKYLNVDGSAISHLP-SSIADLNKLEDLSFFGCKASVLPRV-LSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSG 317 (660)
Q Consensus 241 l~~L~l~~~~l~~lp-~si~~L~~L~~L~l~~~~~~~lp~~-l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~ 317 (660)
++.|++++|.++.+| ..+..+++|++|++++|.+..+|.. +..+++|+.|+|++|++..+|.. +..+++|+.|+|++
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 577778888888877 4689999999999999999888765 57899999999999999998875 57899999999999
Q ss_pred ccceecchhhhcCCCCCeecccCccC
Q 039656 318 NNFEHLPASIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 318 n~l~~lp~~i~~l~~L~~L~L~~c~~ 343 (660)
|.++.+|..+..+++|+.|+|++|+.
T Consensus 182 N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 182 NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CcCCccChhhcccccCCeEEeCCCCc
Confidence 99999999999999999999999875
No 42
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=2.6e-17 Score=168.21 Aligned_cols=193 Identities=21% Similarity=0.222 Sum_probs=143.5
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCC-CC-
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPS-NF- 219 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~-~~- 219 (660)
.++.+.+..+.+ ..+.+.+|.++++|+.|++++|.+. ...+..+..++ +|++|++++|.++.++. .+
T Consensus 29 ~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 29 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQ--------TIEDGAYQSLS-HLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp TCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCC--------EECTTTTTTCT-TCCEEECTTCCCCEECTTTTT
T ss_pred CccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCC--------ccCHHHccCCc-CCCEEECCCCccCccChhhhc
Confidence 355554444433 3455567888888888888888764 12234566676 88888888888877764 44
Q ss_pred CCCCceEEeCCCCCCcccc-------CCCeeecCCCCCCcc--cCccccCCCCCcEEEecCCCCcCCC-CCCCCCCCCC-
Q 039656 220 DPENLIALNLPYSKVEQIW-------KGEKYLNVDGSAISH--LPSSIADLNKLEDLSFFGCKASVLP-RVLSGLSSLK- 288 (660)
Q Consensus 220 ~l~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~~--lp~si~~L~~L~~L~l~~~~~~~lp-~~l~~L~~L~- 288 (660)
.+++|++|++++|.+..+. +.++.|++++|.+.. +|..++.+++|++|++++|.+..++ ..+..+++|+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 7888888888888887653 367888888888886 6788888888888888888877665 3455555555
Q ss_pred ---EEEccCCCCCCCCcccCCCcccCccccccccceecchh-hhcCCCCCeecccCccCCC
Q 039656 289 ---WMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPAS-IKKLSRLTYLNLSGCNMLR 345 (660)
Q Consensus 289 ---~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~l~ 345 (660)
.|++++|.+..+|.......+|+.|++++|.++.+|.. +..+++|+.|+|++|+...
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 88888888888777666667888888888888877765 4778888888888887543
No 43
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=3.5e-17 Score=170.42 Aligned_cols=187 Identities=20% Similarity=0.267 Sum_probs=159.6
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDP 221 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 221 (660)
.++.+.+....+.. + ..+..+++|+.|++++|.+. .++. +..++ +|++|++++|.++.+|....+
T Consensus 42 ~L~~L~l~~~~i~~--l--~~~~~l~~L~~L~L~~n~i~---------~~~~-~~~l~-~L~~L~L~~n~l~~~~~~~~l 106 (308)
T 1h6u_A 42 GITTLSAFGTGVTT--I--EGVQYLNNLIGLELKDNQIT---------DLAP-LKNLT-KITELELSGNPLKNVSAIAGL 106 (308)
T ss_dssp TCCEEECTTSCCCC--C--TTGGGCTTCCEEECCSSCCC---------CCGG-GTTCC-SCCEEECCSCCCSCCGGGTTC
T ss_pred CcCEEEeeCCCccC--c--hhhhccCCCCEEEccCCcCC---------CChh-HccCC-CCCEEEccCCcCCCchhhcCC
Confidence 34555554444433 2 25889999999999999875 3444 77777 999999999999998854489
Q ss_pred CCceEEeCCCCCCcccc-----CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCC
Q 039656 222 ENLIALNLPYSKVEQIW-----KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCD 296 (660)
Q Consensus 222 ~~L~~L~L~~n~l~~l~-----~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~ 296 (660)
++|++|++++|+++.++ +.++.|++++|.++.+|. ++.+++|+.|++++|.+..++. +..+++|+.|++++|.
T Consensus 107 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 99999999999998764 578999999999999987 8999999999999999998887 9999999999999999
Q ss_pred CCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCC
Q 039656 297 LIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLP 348 (660)
Q Consensus 297 l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp 348 (660)
+.+++. +..+++|++|++++|.++.++ .+..+++|+.|++++|+. ...|
T Consensus 185 l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i-~~~~ 233 (308)
T 1h6u_A 185 ISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI-TNQP 233 (308)
T ss_dssp CCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE-ECCC
T ss_pred cCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee-ecCC
Confidence 999876 889999999999999999888 489999999999999875 3444
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=9.9e-17 Score=182.72 Aligned_cols=79 Identities=28% Similarity=0.314 Sum_probs=58.3
Q ss_pred CCCCCEEEccCCCCCC--CCcccCCCcccCccccccccceec-chhhhcCCCCCeecccCccCCCCCCCC---CcCCcEE
Q 039656 284 LSSLKWMELRDCDLIK--IPQDIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICL 357 (660)
Q Consensus 284 L~~L~~L~Ls~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L 357 (660)
+++|+.|+|++|.+.. .|..+..+++|++|+|++|+++.+ |..+..+++|+.|+|++|+..+-.|.. +++|+.|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 3445555555554333 566678889999999999999966 567899999999999998755444433 5788999
Q ss_pred ecccC
Q 039656 358 DARNC 362 (660)
Q Consensus 358 ~l~~c 362 (660)
+++++
T Consensus 548 ~Ls~N 552 (635)
T 4g8a_A 548 DYSLN 552 (635)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 99876
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=6e-17 Score=165.43 Aligned_cols=173 Identities=21% Similarity=0.316 Sum_probs=106.2
Q ss_pred ccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccC---
Q 039656 163 FTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWK--- 239 (660)
Q Consensus 163 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~--- 239 (660)
...+++|+.|++.+|.+. . ...+..++ +|++|++++|.+..++....+++|++|++++|.++.+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~---------~-~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK---------S-VQGIQYLP-NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEECTTSCCC---------C-CTTGGGCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccccceeeeeeCCCCcc---------c-ccccccCC-CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHh
Confidence 345566666666666542 1 12355555 677777777666665533366666666666666654422
Q ss_pred ----CCeeecCCCCCCcccCcc-ccCCCCCcEEEecCCCCcCCCCC-CCCCCCCCEEEccCCCCCCCCcc-cCCCcccCc
Q 039656 240 ----GEKYLNVDGSAISHLPSS-IADLNKLEDLSFFGCKASVLPRV-LSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEW 312 (660)
Q Consensus 240 ----~l~~L~l~~~~l~~lp~s-i~~L~~L~~L~l~~~~~~~lp~~-l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~ 312 (660)
.++.|++++|.++.+|.. ++.+++|++|++++|.+..+|.. +.++++|+.|++++|.+..+|+. ++.+++|+.
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 334455555555555443 56677777777777776666544 46677777777777777765543 466777777
Q ss_pred cccccccceecchh-hhcCCCCCeecccCccCCCC
Q 039656 313 FVLSGNNFEHLPAS-IKKLSRLTYLNLSGCNMLRS 346 (660)
Q Consensus 313 L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~l~~ 346 (660)
|++++|+++.+|.. +..+++|+.|+|++|+....
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 77777777755543 56677777777777765443
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=2e-16 Score=173.88 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=120.1
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDP 221 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 221 (660)
.++.+.+....+.. + ..|.++++|++|++++|.+++ +| +..++ +|++|++++|.++.+| ...+
T Consensus 43 ~L~~L~Ls~n~l~~--~--~~l~~l~~L~~L~Ls~n~l~~---------~~--~~~l~-~L~~L~Ls~N~l~~~~-~~~l 105 (457)
T 3bz5_A 43 TLTSLDCHNSSITD--M--TGIEKLTGLTKLICTSNNITT---------LD--LSQNT-NLTYLACDSNKLTNLD-VTPL 105 (457)
T ss_dssp TCCEEECCSSCCCC--C--TTGGGCTTCSEEECCSSCCSC---------CC--CTTCT-TCSEEECCSSCCSCCC-CTTC
T ss_pred CCCEEEccCCCccc--C--hhhcccCCCCEEEccCCcCCe---------Ec--cccCC-CCCEEECcCCCCceee-cCCC
Confidence 34444444444432 2 257778888888888877642 22 55565 7777777777777665 2267
Q ss_pred CCceEEeCCCCCCcccc----CCCeeecCCCCCCcccCccccCCCCCcEEEecCCC-CcCCCCCCCCCCCCCEEEccCCC
Q 039656 222 ENLIALNLPYSKVEQIW----KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCK-ASVLPRVLSGLSSLKWMELRDCD 296 (660)
Q Consensus 222 ~~L~~L~L~~n~l~~l~----~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~-~~~lp~~l~~L~~L~~L~Ls~~~ 296 (660)
++|++|++++|+++.++ +.++.|++++|.++.+| ++.+++|++|++++|. +..+ .+..+++|+.|++++|.
T Consensus 106 ~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp TTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 77777777777776653 45677777777777764 6667777777777764 4444 25566666666666666
Q ss_pred CCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCC-CCcCCcEEecccC
Q 039656 297 LIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPE-LPIRLICLDARNC 362 (660)
Q Consensus 297 l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~-~~~~L~~L~l~~c 362 (660)
+.++| ++.+++|+.|++++|+++.++ ++.+++|+.|++++|+..+ +|- .+++|+.|++.++
T Consensus 182 l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 182 ITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSS
T ss_pred cceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cCccccCCCCEEEeeCC
Confidence 66655 556666666666666666553 5556666666666554333 441 1455555555544
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=7.9e-17 Score=177.88 Aligned_cols=199 Identities=23% Similarity=0.233 Sum_probs=134.3
Q ss_pred cccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCC-CC-CCCCceEEeCCCCCCccc
Q 039656 160 CGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPS-NF-DPENLIALNLPYSKVEQI 237 (660)
Q Consensus 160 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~-~~-~l~~L~~L~L~~n~l~~l 237 (660)
...|.++++|+.|++++|.+. ...+..+..++ +|++|++++|.+..++. .+ .+++|++|++++|+++.+
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIV--------ILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCC--------EECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred cccccCCCCCCEEECCCCccc--------cCChhHccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 344555555555555555542 12344455555 66666666666654432 33 566666666666666554
Q ss_pred c-------CCCeeecCCCCCCcccCc-cccCCCCCcEEEecCCC-CcCCCCCCCCCCCCCEEEccCCCCCCCCc-ccCCC
Q 039656 238 W-------KGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCK-ASVLPRVLSGLSSLKWMELRDCDLIKIPQ-DIGSL 307 (660)
Q Consensus 238 ~-------~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~-~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~-~l~~l 307 (660)
+ +.++.|++++|.+..++. .+..+++|+.|++++|. ...+|.......+|+.|+|++|.+..+|. .+..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 2 355666666666665543 56667777777777766 44566666666688888888888888874 68899
Q ss_pred cccCccccccccceecch-hhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCcCCccc
Q 039656 308 SSLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCERLRTL 368 (660)
Q Consensus 308 ~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~L~~l 368 (660)
++|+.|+|++|.++.++. .+..+++|+.|+|++|......|.. +++|+.|+++++ .++.+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 311 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTL 311 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCcee
Confidence 999999999999997764 4789999999999999877666654 578888988877 34433
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=2.5e-17 Score=171.00 Aligned_cols=195 Identities=18% Similarity=0.288 Sum_probs=163.6
Q ss_pred CcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCC--C
Q 039656 141 IAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPS--N 218 (660)
Q Consensus 141 ~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~--~ 218 (660)
..++.+.+..+.+......+.++.++++|++|++++|.+ ..+|..+..++ +|++|++++|.+..+|. .
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i---------~~l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~ 121 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV---------ITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSV 121 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE---------EEEEEEEETCT-TCCEEECTTSEEESSTTTTT
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCcc---------ccChhhcCCCC-CCCEEECCCCcccccccchh
Confidence 456666666665554433356677899999999999976 35777788888 99999999999988875 4
Q ss_pred C-CCCCceEEeCCCCCCcccc-------CCCeeecCCCCCCcc--cCccccCCCCCcEEEecCCCCcCC-CCCCCCCCCC
Q 039656 219 F-DPENLIALNLPYSKVEQIW-------KGEKYLNVDGSAISH--LPSSIADLNKLEDLSFFGCKASVL-PRVLSGLSSL 287 (660)
Q Consensus 219 ~-~l~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~~--lp~si~~L~~L~~L~l~~~~~~~l-p~~l~~L~~L 287 (660)
+ .+++|++|++++|.+.... +.++.|++++|.+.. +|..+..+++|++|++++|.+..+ |..+..+++|
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 5 8999999999999987653 467999999999985 899999999999999999998876 6778999999
Q ss_pred CEEEccCCCCCCCCc-ccCCCcccCcccccccccee-cchhhhcCC-CCCeecccCccCCC
Q 039656 288 KWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEH-LPASIKKLS-RLTYLNLSGCNMLR 345 (660)
Q Consensus 288 ~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~-lp~~i~~l~-~L~~L~L~~c~~l~ 345 (660)
+.|+|++|.+.+++. .+..+++|+.|++++|.++. .|..+..++ +|++|+|++|+...
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 999999999999765 78899999999999999994 566788884 99999999998643
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.71 E-value=8.7e-17 Score=179.50 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=64.8
Q ss_pred CCCCCCCEEEccCCCCCC-CCcccCCCcccCcccccccccee---cchhhhcCCCCCeecccCccCCCCCCCC----CcC
Q 039656 282 SGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSGNNFEH---LPASIKKLSRLTYLNLSGCNMLRSLPEL----PIR 353 (660)
Q Consensus 282 ~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~---lp~~i~~l~~L~~L~L~~c~~l~~lp~~----~~~ 353 (660)
..+++|++|++++|.+.+ +|..++.+++|++|++++|+++. +|..++.+++|++|+|++|...+.+|.. +++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567888888888888887 77888888888888888888884 4566888888888888888876656632 567
Q ss_pred CcEEecccCc
Q 039656 354 LICLDARNCE 363 (660)
Q Consensus 354 L~~L~l~~c~ 363 (660)
|+.|++++|.
T Consensus 401 L~~L~Ls~N~ 410 (520)
T 2z7x_B 401 LLSLNMSSNI 410 (520)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECcCCC
Confidence 8888887774
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=5e-17 Score=169.46 Aligned_cols=169 Identities=18% Similarity=0.143 Sum_probs=110.5
Q ss_pred cCCCCccEEEEecCCCCCcccCCcceecCCccccC----CcCceEEEeeCCCCCCCC-CCC-CCCCceEEeCCCCCCcc-
Q 039656 164 TSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYL----PEELRYLHWYGYPLRTLP-SNF-DPENLIALNLPYSKVEQ- 236 (660)
Q Consensus 164 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l----~~~Lr~L~l~~~~l~~lP-~~~-~l~~L~~L~L~~n~l~~- 236 (660)
..+++|+.|++++|.+.+ +|..+..+ +++|++|++++|.+..+| ..+ .+++|++|++++|++.+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~---------~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWAT---------RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCSCCCSEEEEESCBCSS---------SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hcCCCccEEEccCCCCcc---------hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 677777777777777642 24444444 137777888777776666 444 67777777777777532
Q ss_pred ----------ccCCCeeecCCCCCCcccC---cc-ccCCCCCcEEEecCCCCcCCC--CCCCCCCCCCEEEccCCCCCCC
Q 039656 237 ----------IWKGEKYLNVDGSAISHLP---SS-IADLNKLEDLSFFGCKASVLP--RVLSGLSSLKWMELRDCDLIKI 300 (660)
Q Consensus 237 ----------l~~~l~~L~l~~~~l~~lp---~s-i~~L~~L~~L~l~~~~~~~lp--~~l~~L~~L~~L~Ls~~~l~~l 300 (660)
-.+.++.|++++|.++.+| .. +..+++|++|++++|.+...+ ..+..+++|++|+|++|.+..+
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 1345677777777776433 22 245677777777777766543 3345567777777777777777
Q ss_pred CcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCC
Q 039656 301 PQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNML 344 (660)
Q Consensus 301 p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l 344 (660)
|..+. ++|++|++++|+++.+|. +..+++|++|+|++|+..
T Consensus 269 p~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred hhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 76665 677777777777776665 667777777777776543
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=175.27 Aligned_cols=190 Identities=24% Similarity=0.378 Sum_probs=160.4
Q ss_pred CcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCC-ccccCCcCceEEEeeCCCCCCCCCC-
Q 039656 141 IAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQ-GLEYLPEELRYLHWYGYPLRTLPSN- 218 (660)
Q Consensus 141 ~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~-~l~~l~~~Lr~L~l~~~~l~~lP~~- 218 (660)
..++.+.+..+.+ ..+.+.+|.++++|+.|++++|.++ .++. .+..++ +|++|++++|.+..+|..
T Consensus 88 ~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~ 155 (440)
T 3zyj_A 88 RHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLT---------TIPNGAFVYLS-KLKELWLRNNPIESIPSYA 155 (440)
T ss_dssp SSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCS---------SCCTTTSCSCS-SCCEEECCSCCCCEECTTT
T ss_pred CCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCC---------eeCHhHhhccc-cCceeeCCCCcccccCHHH
Confidence 4455555555444 4466789999999999999999875 4444 566777 999999999999998864
Q ss_pred C-CCCCceEEeCCC-CCCcccc-------CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCC-CCCCCCCCCCC
Q 039656 219 F-DPENLIALNLPY-SKVEQIW-------KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVL-PRVLSGLSSLK 288 (660)
Q Consensus 219 ~-~l~~L~~L~L~~-n~l~~l~-------~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~l-p~~l~~L~~L~ 288 (660)
+ .+++|++|++++ +.+..++ ++++.|++++|.++.+|. +..+++|++|++++|.+..+ |..+.++++|+
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCC
Confidence 4 899999999998 4555443 467999999999999996 89999999999999998876 67899999999
Q ss_pred EEEccCCCCCCC-CcccCCCcccCccccccccceecchh-hhcCCCCCeecccCccC
Q 039656 289 WMELRDCDLIKI-PQDIGSLSSLEWFVLSGNNFEHLPAS-IKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 289 ~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 343 (660)
.|+|++|.+..+ |..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+.
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 999999999994 56799999999999999999988765 58899999999999874
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=1.9e-16 Score=167.10 Aligned_cols=186 Identities=19% Similarity=0.223 Sum_probs=106.3
Q ss_pred cccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc---
Q 039656 162 TFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW--- 238 (660)
Q Consensus 162 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~--- 238 (660)
.+..+++|++|++++|.+. .++. +..++ +|++|++++|.++.+|....+++|++|++++|.+..++
T Consensus 61 ~~~~~~~L~~L~l~~n~i~---------~~~~-~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 129 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQIT---------DISP-LSNLV-KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLA 129 (347)
T ss_dssp TGGGCTTCCEEECCSSCCC---------CCGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGT
T ss_pred hhhhcCCccEEEccCCccc---------cchh-hhcCC-cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhc
Confidence 3666677777777766653 2222 45555 67777777766666654336666777777666665543
Q ss_pred --CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccc
Q 039656 239 --KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLS 316 (660)
Q Consensus 239 --~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~ 316 (660)
+.++.|++++|.....+..+..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|+++
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAY 207 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecc
Confidence 34566666666443333346666666666666666555554 5566666666666666665544 5555555666665
Q ss_pred cccceecchhhhcCCCCCeecccCccCCCCCCCC--CcCCcEEecccC
Q 039656 317 GNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL--PIRLICLDARNC 362 (660)
Q Consensus 317 ~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c 362 (660)
+|.+..++. +..+++|+.|++++|... .+|.. +++|+.|++.+|
T Consensus 208 ~n~l~~~~~-~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 208 VNQITDITP-VANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTN 253 (347)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS
T ss_pred cCCCCCCch-hhcCCcCCEEEccCCccC-CCcchhcCCCCCEEECCCC
Confidence 555555443 555555666665555432 22221 445555555544
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=5.6e-17 Score=184.50 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=48.8
Q ss_pred CCCEEEccCCCCCCCCc-ccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEeccc
Q 039656 286 SLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARN 361 (660)
Q Consensus 286 ~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~ 361 (660)
+|+.|++++|.+.+++. .++.+++|++|++++|.++.+|..+..+++|++|++++|...+..|.. +++|+.|++.+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 34455555555555433 366677777777777777777777777777777777776655443422 56677777766
Q ss_pred Cc
Q 039656 362 CE 363 (660)
Q Consensus 362 c~ 363 (660)
|.
T Consensus 335 n~ 336 (606)
T 3t6q_A 335 NT 336 (606)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=1.1e-16 Score=168.95 Aligned_cols=205 Identities=20% Similarity=0.305 Sum_probs=125.1
Q ss_pred CcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCC
Q 039656 141 IAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFD 220 (660)
Q Consensus 141 ~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 220 (660)
..++.+.+..+.+..+ ..+.++++|+.|++++|... ..+..+..++ +|++|++++|.+..++....
T Consensus 110 ~~L~~L~l~~n~i~~~----~~~~~l~~L~~L~l~~n~~~---------~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~ 175 (347)
T 4fmz_A 110 TNLRELYLNEDNISDI----SPLANLTKMYSLNLGANHNL---------SDLSPLSNMT-GLNYLTVTESKVKDVTPIAN 175 (347)
T ss_dssp TTCSEEECTTSCCCCC----GGGTTCTTCCEEECTTCTTC---------CCCGGGTTCT-TCCEEECCSSCCCCCGGGGG
T ss_pred CcCCEEECcCCcccCc----hhhccCCceeEEECCCCCCc---------ccccchhhCC-CCcEEEecCCCcCCchhhcc
Confidence 3445454444433321 12667777777777766432 1222355555 67777777777666655336
Q ss_pred CCCceEEeCCCCCCcccc-----CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCC
Q 039656 221 PENLIALNLPYSKVEQIW-----KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDC 295 (660)
Q Consensus 221 l~~L~~L~L~~n~l~~l~-----~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~ 295 (660)
+++|++|++++|.+..++ +.++.|++++|.+..++. +..+++|++|++++|.+..+|. +..+++|++|++++|
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN 253 (347)
T ss_dssp CTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC
Confidence 667777777777666543 355666666666666655 6666677777777776666665 666667777777776
Q ss_pred CCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccCc
Q 039656 296 DLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNCE 363 (660)
Q Consensus 296 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~ 363 (660)
.+..++ .+..+++|++|++++|.++.+| .+..+++|+.|++++|+.....|.. +++|+.|++.+|.
T Consensus 254 ~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 254 QISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ccCCCh-hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 666653 4666666777777766666664 4666666777777666654444332 4566666666654
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=4.5e-17 Score=185.28 Aligned_cols=205 Identities=19% Similarity=0.225 Sum_probs=117.1
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCC---CCC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTL---PSN 218 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~l---P~~ 218 (660)
.++.+.+....+.. ++ .+ .+++|+.|++++|...+ .+ .+..++ +|++|++++|.+..+ |..
T Consensus 308 ~L~~L~l~~n~l~~--lp--~~-~l~~L~~L~l~~n~~~~--------~~--~~~~l~-~L~~L~ls~n~l~~~~~~~~~ 371 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQ--FP--TL-DLPFLKSLTLTMNKGSI--------SF--KKVALP-SLSYLDLSRNALSFSGCCSYS 371 (606)
T ss_dssp CCSEEEEESCCCSS--CC--CC-CCSSCCEEEEESCSSCE--------EC--CCCCCT-TCCEEECCSSCEEEEEECCHH
T ss_pred cCCEEEcccccCcc--cc--cC-CCCccceeeccCCcCcc--------ch--hhccCC-CCCEEECcCCccCCCcchhhh
Confidence 45555555555422 22 33 67777777777774321 11 333444 666666666665443 333
Q ss_pred C-CCCCceEEeCCCCCCcccc------CCCeeecCCCCCCcccCc--cccCCCCCcEEEecCCCCcC-CCCCCCCCCCCC
Q 039656 219 F-DPENLIALNLPYSKVEQIW------KGEKYLNVDGSAISHLPS--SIADLNKLEDLSFFGCKASV-LPRVLSGLSSLK 288 (660)
Q Consensus 219 ~-~l~~L~~L~L~~n~l~~l~------~~l~~L~l~~~~l~~lp~--si~~L~~L~~L~l~~~~~~~-lp~~l~~L~~L~ 288 (660)
+ .+++|++|++++|.+..++ +.++.|++++|.+..++. .+..+++|++|++++|.+.. .|..+.++++|+
T Consensus 372 ~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 3 5666666666666655543 245566666666665432 55666666666666666443 445566666666
Q ss_pred EEEccCCCCCC--CCcccCCCcccCccccccccceec-chhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccC
Q 039656 289 WMELRDCDLIK--IPQDIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNC 362 (660)
Q Consensus 289 ~L~Ls~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c 362 (660)
+|++++|.+.+ +|..++.+++|+.|++++|.++.+ |..+..+++|+.|+|++|+..+..|.. +++|+.|++++|
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 66666666654 455666666666666666666633 344566666666666666555544433 345666666655
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=3.6e-16 Score=171.65 Aligned_cols=183 Identities=23% Similarity=0.312 Sum_probs=150.7
Q ss_pred CCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCcccc---CCC
Q 039656 166 MSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIW---KGE 241 (660)
Q Consensus 166 l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~---~~l 241 (660)
+++|+.|++++|.+.+ +| .++++|++|++++|.++.+|. + .+++|++|++++|+++.++ ..+
T Consensus 110 ~~~L~~L~l~~n~l~~---------l~----~~~~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~lp~~~~~L 175 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKA---------LS----DLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSL 175 (454)
T ss_dssp CTTCCEEECCSSCCSC---------CC----SCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred cCCCcEEECCCCccCc---------cc----CCCCCCCEEECcCCCCCCCcc-cCCCCCCCEEECCCCcCcccCCCcccc
Confidence 4678888888887642 22 233589999999999998995 5 8999999999999998764 468
Q ss_pred eeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccce
Q 039656 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFE 321 (660)
Q Consensus 242 ~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~ 321 (660)
++|++++|.++.+| +++++++|++|++++|.+..+|... ++|++|++++|.+..+| .++.+++|++|++++|+++
T Consensus 176 ~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 176 EFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred cEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCC
Confidence 99999999999998 5999999999999999988887643 58999999999999888 4899999999999999999
Q ss_pred ecchhhhcCCCCCeecccCccCCCCCCCCCcCCcEEecccCcCCcccCCCC
Q 039656 322 HLPASIKKLSRLTYLNLSGCNMLRSLPELPIRLICLDARNCERLRTLQELP 372 (660)
Q Consensus 322 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~~~~L~~L~l~~c~~L~~l~~~~ 372 (660)
.+|.. +++|+.|++++|.. ..+|..+++|+.|++++|. ++.++..+
T Consensus 251 ~l~~~---~~~L~~L~l~~N~l-~~l~~~~~~L~~L~ls~N~-l~~l~~~~ 296 (454)
T 1jl5_A 251 TLPDL---PPSLEALNVRDNYL-TDLPELPQSLTFLDVSENI-FSGLSELP 296 (454)
T ss_dssp SCCSC---CTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSC-CSEESCCC
T ss_pred ccccc---ccccCEEECCCCcc-cccCcccCcCCEEECcCCc-cCcccCcC
Confidence 88853 47899999998764 4588888899999998863 55554443
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=1.4e-17 Score=173.70 Aligned_cols=186 Identities=16% Similarity=0.142 Sum_probs=134.2
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCcc--ccCCcCceEEEeeCCCCCCCCCCC-CC-----CCceEEeCCCCCCcc
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGL--EYLPEELRYLHWYGYPLRTLPSNF-DP-----ENLIALNLPYSKVEQ 236 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l--~~l~~~Lr~L~l~~~~l~~lP~~~-~l-----~~L~~L~L~~n~l~~ 236 (660)
++++|+.|++++|.+.+ .+|..+ ..++ +|++|++++|.+..+|..+ .+ ++|++|++++|++..
T Consensus 93 ~l~~L~~L~L~~n~l~~--------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~ 163 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG--------TAPPPLLEATGP-DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163 (312)
T ss_dssp TTSCCCEEEEEEEBCBS--------CCCCCSSSCCSC-CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred CcCCccEEEccCCcccc--------hhHHHHHHhcCC-CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence 68899999999998752 556655 6666 8999999999998887666 44 899999999998877
Q ss_pred cc-------CCCeeecCCCCCCcc---cCccc--cCCCCCcEEEecCCCCcCCCC----CCCCCCCCCEEEccCCCCCCC
Q 039656 237 IW-------KGEKYLNVDGSAISH---LPSSI--ADLNKLEDLSFFGCKASVLPR----VLSGLSSLKWMELRDCDLIKI 300 (660)
Q Consensus 237 l~-------~~l~~L~l~~~~l~~---lp~si--~~L~~L~~L~l~~~~~~~lp~----~l~~L~~L~~L~Ls~~~l~~l 300 (660)
++ +.++.|++++|.+.. +|..+ +.+++|++|++++|.+..++. .+.++++|++|+|++|.+.+.
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 64 256778888887643 34444 778888888888887764332 234667888888888888774
Q ss_pred C--cccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC--CcCCcEEecccC
Q 039656 301 P--QDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL--PIRLICLDARNC 362 (660)
Q Consensus 301 p--~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c 362 (660)
+ ..+..+++|++|+|++|.++.+|..+. ++|++|+|++|+. ..+|.. +++|+.|++.+.
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC-CSCCCTTTSCEEEEEECTTC
T ss_pred cchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCC-CCChhHhhCCCCCEEeccCC
Confidence 4 355667788888888888888877665 7788888887754 334543 455566666553
No 58
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=168.57 Aligned_cols=191 Identities=16% Similarity=0.100 Sum_probs=138.1
Q ss_pred EEEEEeecCCCeeeecCcccc--cCCCCccEEEEecCCCCCcccCCcceecC-CccccCCcCceEEEeeCCCCCCCCC-C
Q 039656 143 IEGIFLDMSKIRDIHLACGTF--TSMSNLRLLKFYMPNRDGFSIMSSKVHLD-QGLEYLPEELRYLHWYGYPLRTLPS-N 218 (660)
Q Consensus 143 v~~i~l~~s~~~~~~l~~~~f--~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp-~~l~~l~~~Lr~L~l~~~~l~~lP~-~ 218 (660)
++.+.+....+. ...+..+ .++++|+.|++++|.+.+.. ..++ ..+..++ +|++|++++|.+..+|. .
T Consensus 93 L~~L~l~~n~l~--~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-----~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~ 164 (310)
T 4glp_A 93 LKELTLEDLKIT--GTMPPLPLEATGLALSSLRLRNVSWATGR-----SWLAELQQWLKP-GLKVLSIAQAHSPAFSCEQ 164 (310)
T ss_dssp CCEEEEESCCCB--SCCCCCSSSCCCBCCSSCEEESCCCSSTT-----SSHHHHHTTBCS-CCCEEEEECCSSCCCCTTS
T ss_pred eeEEEeeCCEec--cchhhhhhhccCCCCCEEEeecccccchh-----hhhHHHHhhhcc-CCCEEEeeCCCcchhhHHH
Confidence 566666555543 2333445 88999999999999875310 0111 2334455 89999999999977774 4
Q ss_pred C-CCCCceEEeCCCCCCcc-----------ccCCCeeecCCCCCCcccCcc----ccCCCCCcEEEecCCCCcCC-CCCC
Q 039656 219 F-DPENLIALNLPYSKVEQ-----------IWKGEKYLNVDGSAISHLPSS----IADLNKLEDLSFFGCKASVL-PRVL 281 (660)
Q Consensus 219 ~-~l~~L~~L~L~~n~l~~-----------l~~~l~~L~l~~~~l~~lp~s----i~~L~~L~~L~l~~~~~~~l-p~~l 281 (660)
+ .+++|++|+|++|++.+ -.+.+++|++++|.++.+|.. ++.+++|++|++++|.+..+ |..+
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 5 88999999999998643 134678888888888766552 46778888888888887765 6666
Q ss_pred CCC---CCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCC
Q 039656 282 SGL---SSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNML 344 (660)
Q Consensus 282 ~~L---~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l 344 (660)
..+ ++|++|+|++|.+..+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|+..
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred HhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 665 588888888888888887764 688888888888887764 677788888888887654
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=5.1e-17 Score=178.43 Aligned_cols=205 Identities=22% Similarity=0.255 Sum_probs=131.1
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCc------------CceEEEeeC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPE------------ELRYLHWYG 209 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~------------~Lr~L~l~~ 209 (660)
.++.+.+..+.+. .+ +.+++++++|++|++++|.+. ..+|..+..+.. +|++|++++
T Consensus 12 ~L~~L~l~~n~l~--~i-P~~i~~L~~L~~L~l~~n~~~--------~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 12 FLQEPLRHSSNLT--EM-PVEAENVKSKTEYYNAWSEWE--------RNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHH--------HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred cchhhhcccCchh--hC-ChhHhcccchhhhhccCCccc--------ccCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence 3444444444442 22 456788888888888877653 256666666551 247788888
Q ss_pred CCCCCCCCCCCCCCceEEeCCCCCCcccc---CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCC
Q 039656 210 YPLRTLPSNFDPENLIALNLPYSKVEQIW---KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSS 286 (660)
Q Consensus 210 ~~l~~lP~~~~l~~L~~L~L~~n~l~~l~---~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~ 286 (660)
|.++.+|.. +++|++|++++|.+++++ ..++.|++++|.++.+|.. .++|++|++++|.+..+| .++++++
T Consensus 81 ~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~ 154 (454)
T 1jl5_A 81 LGLSSLPEL--PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSF 154 (454)
T ss_dssp SCCSCCCSC--CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTT
T ss_pred CccccCCCC--cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCC
Confidence 887777763 467888888888777654 4567777888877776642 267888888888877777 4778888
Q ss_pred CCEEEccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCCCcCCcEEecccCcCCc
Q 039656 287 LKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPELPIRLICLDARNCERLR 366 (660)
Q Consensus 287 L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~~~~L~~L~l~~c~~L~ 366 (660)
|++|++++|.+.++|..+ .+|++|++++|.++.+| .++.+++|+.|++++|.. ..+|..+++|+.|++.+| .++
T Consensus 155 L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~n-~l~ 228 (454)
T 1jl5_A 155 LKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL-KKLPDLPLSLESIVAGNN-ILE 228 (454)
T ss_dssp CCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCCCCTTCCEEECCSS-CCS
T ss_pred CCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC-CcCCCCcCcccEEECcCC-cCC
Confidence 888888888877777543 47788888888887777 577788888888877654 347777777888887776 444
Q ss_pred ccC
Q 039656 367 TLQ 369 (660)
Q Consensus 367 ~l~ 369 (660)
.++
T Consensus 229 ~lp 231 (454)
T 1jl5_A 229 ELP 231 (454)
T ss_dssp SCC
T ss_pred ccc
Confidence 444
No 60
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=3.8e-16 Score=172.10 Aligned_cols=163 Identities=25% Similarity=0.306 Sum_probs=114.8
Q ss_pred cccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccc-----cCCCeeecCCCCCCcccCccccCCCCCcEEEe
Q 039656 195 LEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQI-----WKGEKYLNVDGSAISHLPSSIADLNKLEDLSF 269 (660)
Q Consensus 195 l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l-----~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l 269 (660)
+..++ +|++|++++|.+..++....+++|++|++++|.+..+ .+.++.|++++|.++.++ .+..+++|+.|++
T Consensus 173 ~~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l 250 (466)
T 1o6v_A 173 LANLT-TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDL 250 (466)
T ss_dssp GTTCT-TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred hccCC-CCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEEC
Confidence 44555 6777777777776665433677777777777776654 346677777777777765 3677777777777
Q ss_pred cCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCC-
Q 039656 270 FGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLP- 348 (660)
Q Consensus 270 ~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp- 348 (660)
++|.+..+++ +..+++|+.|++++|.+..+|. +..+++|+.|++++|.++.++. +..+++|+.|+|++|+..+..|
T Consensus 251 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~ 327 (466)
T 1o6v_A 251 ANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPV 327 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGG
T ss_pred CCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhh
Confidence 7777776665 7777778888888777777665 7777778888888777777664 6777788888887776554433
Q ss_pred CCCcCCcEEecccC
Q 039656 349 ELPIRLICLDARNC 362 (660)
Q Consensus 349 ~~~~~L~~L~l~~c 362 (660)
..+++|+.|++.+|
T Consensus 328 ~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 328 SSLTKLQRLFFYNN 341 (466)
T ss_dssp GGCTTCCEEECCSS
T ss_pred ccCccCCEeECCCC
Confidence 12567777777766
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=9.3e-17 Score=160.57 Aligned_cols=188 Identities=13% Similarity=0.172 Sum_probs=157.7
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCC-CCCcccCCcceecCC-ccccCCcCceEEEeeC-CCCCCCCCC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPN-RDGFSIMSSKVHLDQ-GLEYLPEELRYLHWYG-YPLRTLPSN 218 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~-~~~~~~~~~~~~lp~-~l~~l~~~Lr~L~l~~-~~l~~lP~~ 218 (660)
.++.+.+..+.+. .+.+.+|.++++|+.|++++|. +. .++. .+..++ +|++|++++ |.++.+|..
T Consensus 32 ~l~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~~l~---------~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 32 STQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQ---------QLESHSFYNLS-KVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TCCEEEEESCCCS--EECTTTTTTCTTCCEEEEECCSSCC---------EECTTTEESCT-TCCEEEEEEETTCCEECTT
T ss_pred cccEEEEeCCcce--EECHHHccCCCCCcEEeCCCCCCcc---------eeCHhHcCCCc-CCcEEECCCCCCeeEcCHH
Confidence 5666666666654 4566789999999999999996 63 4554 567777 999999998 999999864
Q ss_pred -C-CCCCceEEeCCCCCCccccC-----CCe---eecCCCC-CCcccCc-cccCCCCCc-EEEecCCCCcCCCCCCCCCC
Q 039656 219 -F-DPENLIALNLPYSKVEQIWK-----GEK---YLNVDGS-AISHLPS-SIADLNKLE-DLSFFGCKASVLPRVLSGLS 285 (660)
Q Consensus 219 -~-~l~~L~~L~L~~n~l~~l~~-----~l~---~L~l~~~-~l~~lp~-si~~L~~L~-~L~l~~~~~~~lp~~l~~L~ 285 (660)
+ .+++|++|++++|.++.++. .++ .|++++| .++.+|. .+..+++|+ +|++++|.+..+|......+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT 179 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence 4 89999999999999988764 345 8999999 9999886 489999999 99999999999988766668
Q ss_pred CCCEEEccCCC-CCCCC-cccCCC-cccCccccccccceecchhhhcCCCCCeecccCccC
Q 039656 286 SLKWMELRDCD-LIKIP-QDIGSL-SSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 286 ~L~~L~Ls~~~-l~~lp-~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 343 (660)
+|+.|+|++|. +..+| ..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++..
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 99999999995 98875 468889 9999999999999999976 789999999998753
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=7.3e-16 Score=174.99 Aligned_cols=175 Identities=27% Similarity=0.307 Sum_probs=145.5
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccc---cCCC
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQI---WKGE 241 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l---~~~l 241 (660)
.+++|++|++++|.++ .+|. .+.+|+.|++++|.++.+|..+ ++|++|++++|+++.+ +.++
T Consensus 99 ~l~~L~~L~Ls~N~l~---------~l~~----~l~~L~~L~L~~N~l~~lp~~l--~~L~~L~Ls~N~l~~l~~~~~~L 163 (622)
T 3g06_A 99 LPPGLLELSIFSNPLT---------HLPA----LPSGLCKLWIFGNQLTSLPVLP--PGLQELSVSDNQLASLPALPSEL 163 (622)
T ss_dssp CCTTCCEEEECSCCCC---------CCCC----CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSCCCCCCTTC
T ss_pred CCCCCCEEECcCCcCC---------CCCC----CCCCcCEEECCCCCCCcCCCCC--CCCCEEECcCCcCCCcCCccCCC
Confidence 4556666666666553 3343 3348999999999999999854 8999999999999875 4578
Q ss_pred eeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccce
Q 039656 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFE 321 (660)
Q Consensus 242 ~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~ 321 (660)
+.|++++|.++.+| ..+++|+.|++++|.+..+|.. +++|+.|++++|.+..+|.. +++|+.|++++|+++
T Consensus 164 ~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 164 CKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT 234 (622)
T ss_dssp CEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS
T ss_pred CEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccC
Confidence 99999999999999 4679999999999999988864 57899999999999998864 478999999999999
Q ss_pred ecchhhhcCCCCCeecccCccCCCCCCCCCcCCcEEecccCcCCccc
Q 039656 322 HLPASIKKLSRLTYLNLSGCNMLRSLPELPIRLICLDARNCERLRTL 368 (660)
Q Consensus 322 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~~~~L~~L~l~~c~~L~~l 368 (660)
.+| ..+++|+.|+|++|+ +..+|..+++|+.|++.+| .++.+
T Consensus 235 ~lp---~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N-~L~~l 276 (622)
T 3g06_A 235 SLP---VLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRL 276 (622)
T ss_dssp CCC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCCSC
T ss_pred cCC---CCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCC-CCCcC
Confidence 998 567899999999985 5688888999999999987 45544
No 63
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=5.3e-17 Score=167.63 Aligned_cols=168 Identities=26% Similarity=0.326 Sum_probs=130.9
Q ss_pred ccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc----
Q 039656 163 FTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW---- 238 (660)
Q Consensus 163 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~---- 238 (660)
+.++++|+.|++++|.+. .++ ++..++ +|++|++++|.++.++....+++|++|++++|.++.++
T Consensus 42 ~~~l~~L~~L~l~~~~i~---------~~~-~~~~l~-~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK---------SVQ-GIQYLP-NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKD 110 (291)
T ss_dssp HHHHHTCCEEECTTSCCC---------CCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTT
T ss_pred hhhcCcccEEEccCCCcc---------cCh-hHhcCC-CCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhcc
Confidence 456778888888888764 233 466676 88888888888888777337888888888888887653
Q ss_pred -CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCcccccc
Q 039656 239 -KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSG 317 (660)
Q Consensus 239 -~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~ 317 (660)
+.++.|++++|.++.++ .+..+++|+.|++++|.+..+ +.+..+++|+.|++++|.+.++++ +..+++|+.|++++
T Consensus 111 l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp CTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCC
Confidence 46677777777777774 478888888888888888777 458888888888888888888765 88888888888888
Q ss_pred ccceecchhhhcCCCCCeecccCccCCC
Q 039656 318 NNFEHLPASIKKLSRLTYLNLSGCNMLR 345 (660)
Q Consensus 318 n~l~~lp~~i~~l~~L~~L~L~~c~~l~ 345 (660)
|.++.+|. +..+++|+.|++++|+...
T Consensus 188 N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 188 NHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CcCCCChh-hccCCCCCEEECcCCcccC
Confidence 88888874 7888888888888876543
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=9.1e-18 Score=175.50 Aligned_cols=207 Identities=16% Similarity=0.218 Sum_probs=167.1
Q ss_pred CcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCC
Q 039656 141 IAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFD 220 (660)
Q Consensus 141 ~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 220 (660)
..++.+.+..+.+.... .|.++++|++|++++|.++ .++ ..+ +|++|++++|.+..++...
T Consensus 58 ~~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~Ls~n~l~---------~l~----~~~-~L~~L~l~~n~l~~~~~~~- 118 (317)
T 3o53_A 58 TKLELLNLSSNVLYETL----DLESLSTLRTLDLNNNYVQ---------ELL----VGP-SIETLHAANNNISRVSCSR- 118 (317)
T ss_dssp TTCCEEECTTSCCEEEE----EETTCTTCCEEECCSSEEE---------EEE----ECT-TCCEEECCSSCCSEEEECC-
T ss_pred CcCCEEECCCCcCCcch----hhhhcCCCCEEECcCCccc---------ccc----CCC-CcCEEECCCCccCCcCccc-
Confidence 45666666655554322 3899999999999999764 232 224 8999999999998777543
Q ss_pred CCCceEEeCCCCCCcccc-------CCCeeecCCCCCCcccC-ccc-cCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEE
Q 039656 221 PENLIALNLPYSKVEQIW-------KGEKYLNVDGSAISHLP-SSI-ADLNKLEDLSFFGCKASVLPRVLSGLSSLKWME 291 (660)
Q Consensus 221 l~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~~lp-~si-~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~ 291 (660)
+++|++|++++|+++.++ +.++.|++++|.+..++ ..+ ..+++|++|++++|.+..+|. ...+++|++|+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~ 197 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLD 197 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEE
Confidence 688999999999998763 46899999999999764 445 478999999999999988865 45699999999
Q ss_pred ccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCC-CCCCCC---CcCCcEEecccCcCCcc
Q 039656 292 LRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNML-RSLPEL---PIRLICLDARNCERLRT 367 (660)
Q Consensus 292 Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l-~~lp~~---~~~L~~L~l~~c~~L~~ 367 (660)
|++|.+..+|+.+..+++|+.|++++|.++.+|..+..+++|+.|+|++|+.. ..+|.. .++|+.|++.++..++.
T Consensus 198 Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 99999999999999999999999999999999999999999999999999877 555544 44556666665555443
No 65
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=4.1e-16 Score=177.39 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=97.4
Q ss_pred CceEEEeeCCCC-CCCCCCCCCCCceEEeCCCCCCccc---------cCCCeeecCCCCCCcccCccccCCCCCcEEEec
Q 039656 201 ELRYLHWYGYPL-RTLPSNFDPENLIALNLPYSKVEQI---------WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFF 270 (660)
Q Consensus 201 ~Lr~L~l~~~~l-~~lP~~~~l~~L~~L~L~~n~l~~l---------~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~ 270 (660)
+|+.|++++|.. ..+ ....+++|++|++++|.++.+ .+.++.|++++|.+..+|..+..+++|++|+++
T Consensus 329 ~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 407 (606)
T ss_dssp SCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECT
T ss_pred ccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECC
Confidence 555555555532 222 111556666666666665544 235666666666666666666666666666666
Q ss_pred CCCCcCCC--CCCCCCCCCCEEEccCCCCCC-CCcccCCCcccCcccccccccee--cchhhhcCCCCCeecccCccCCC
Q 039656 271 GCKASVLP--RVLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSGNNFEH--LPASIKKLSRLTYLNLSGCNMLR 345 (660)
Q Consensus 271 ~~~~~~lp--~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~--lp~~i~~l~~L~~L~L~~c~~l~ 345 (660)
+|.+...+ ..+.++++|++|++++|.+.. .|..++.+++|++|++++|.+.. +|..++.+++|+.|+|++|...+
T Consensus 408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence 66655443 256666667777777666665 45566666677777777666663 56666666777777777666555
Q ss_pred CCCCC---CcCCcEEecccC
Q 039656 346 SLPEL---PIRLICLDARNC 362 (660)
Q Consensus 346 ~lp~~---~~~L~~L~l~~c 362 (660)
..|.. +++|+.|++++|
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSS
T ss_pred cChhhhcccccCCEEECCCC
Confidence 55543 455666666665
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=3.5e-16 Score=180.49 Aligned_cols=211 Identities=23% Similarity=0.290 Sum_probs=145.4
Q ss_pred cEEEEEeecCCCeeeecCcccccCC--CCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCC-CCC-C
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSM--SNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLR-TLP-S 217 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l--~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~-~lP-~ 217 (660)
.++.+.+..+.+....+....|..+ ++|+.|++++|.+. ...|..+..++ +|++|++++|.+. .+| .
T Consensus 354 ~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~--------~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS--------KIESDAFSWLG-HLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC--------EECTTTTTTCT-TCCEEECCSSCCEEECCSG
T ss_pred CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC--------eEChhhhhCCC-CCCEEeCCCCcCccccCcc
Confidence 3444444333322233344445433 47888888888764 23455666666 7888888888874 465 3
Q ss_pred CC-CCCCceEEeCCCCCCccc-------cCCCeeecCCCCCCc---ccCccccCCCCCcEEEecCCCCcCCCCC-CCCCC
Q 039656 218 NF-DPENLIALNLPYSKVEQI-------WKGEKYLNVDGSAIS---HLPSSIADLNKLEDLSFFGCKASVLPRV-LSGLS 285 (660)
Q Consensus 218 ~~-~l~~L~~L~L~~n~l~~l-------~~~l~~L~l~~~~l~---~lp~si~~L~~L~~L~l~~~~~~~lp~~-l~~L~ 285 (660)
.+ .+++|++|++++|++..+ .+.++.|++++|.+. .+|..++.+++|++|++++|.+..+|+. +.+++
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 504 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence 44 778888888888877655 346778888887764 5677788888888888888887777653 67788
Q ss_pred CCCEEEccCCCCCCCCc---------ccCCCcccCccccccccceecchh-hhcCCCCCeecccCccCCCCCCCC----C
Q 039656 286 SLKWMELRDCDLIKIPQ---------DIGSLSSLEWFVLSGNNFEHLPAS-IKKLSRLTYLNLSGCNMLRSLPEL----P 351 (660)
Q Consensus 286 ~L~~L~Ls~~~l~~lp~---------~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~----~ 351 (660)
+|+.|+|++|.+..++. .++.+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+.. .+|.. +
T Consensus 505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l 583 (680)
T 1ziw_A 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQ 583 (680)
T ss_dssp TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCC
Confidence 88888888888776421 267788888888888888887764 678888888888776544 55532 4
Q ss_pred cCCcEEecccC
Q 039656 352 IRLICLDARNC 362 (660)
Q Consensus 352 ~~L~~L~l~~c 362 (660)
++|+.|++.++
T Consensus 584 ~~L~~L~L~~N 594 (680)
T 1ziw_A 584 VSLKSLNLQKN 594 (680)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEECCCC
Confidence 67778887776
No 67
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=6.6e-16 Score=155.64 Aligned_cols=143 Identities=25% Similarity=0.386 Sum_probs=72.2
Q ss_pred CceEEEeeCCCCCCCCCC-C-CCCCceEEeCCCCCCccccC-------CCeeecCCCCCCcccCc-cccCCCCCcEEEec
Q 039656 201 ELRYLHWYGYPLRTLPSN-F-DPENLIALNLPYSKVEQIWK-------GEKYLNVDGSAISHLPS-SIADLNKLEDLSFF 270 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~-~-~l~~L~~L~L~~n~l~~l~~-------~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~ 270 (660)
+|+.|++++|.+..++.. + .+++|++|+|++|.++.+++ .++.|++++|.++.+|. .+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 666666666666555543 3 56666666666666554321 22333333333333332 23455555555555
Q ss_pred CCCCcCCCCC-CCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccceecch-hhhcCCCCCeecccCccC
Q 039656 271 GCKASVLPRV-LSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 271 ~~~~~~lp~~-l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 343 (660)
+|.+..+|.. +.++++|++|+|++|.+..+|+ .++.+++|++|+|++|+++.+|. .+..+++|+.|+|++|+.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 5555544433 3445555555555555555443 34555555555555555554443 344555555555555443
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=3.5e-16 Score=176.31 Aligned_cols=167 Identities=24% Similarity=0.341 Sum_probs=136.3
Q ss_pred CceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccc---------cCCCeeecCCCCCCcccCccccCCCCCcEEEecC
Q 039656 201 ELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQI---------WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFG 271 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l---------~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~ 271 (660)
+|+.|++++|.+........+++|++|++++|.+... .+.++.|++++|.+..+|..+..+++|++|++++
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~ 405 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405 (570)
T ss_dssp SCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT
T ss_pred ccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccC
Confidence 5666666666554333334678899999999998765 3578999999999999888899999999999999
Q ss_pred CCCcCCC--CCCCCCCCCCEEEccCCCCCC-CCcccCCCcccCccccccccce--ecchhhhcCCCCCeecccCccCCCC
Q 039656 272 CKASVLP--RVLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSGNNFE--HLPASIKKLSRLTYLNLSGCNMLRS 346 (660)
Q Consensus 272 ~~~~~lp--~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~l~~ 346 (660)
|.+...+ ..+.++++|++|++++|.+.. .|..+..+++|++|++++|.+. .+|..+..+++|+.|+|++|+..+.
T Consensus 406 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp SEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 9977654 368899999999999999887 6778899999999999999987 6898899999999999999987776
Q ss_pred CCCC---CcCCcEEecccCcCCccc
Q 039656 347 LPEL---PIRLICLDARNCERLRTL 368 (660)
Q Consensus 347 lp~~---~~~L~~L~l~~c~~L~~l 368 (660)
.|.. +++|+.|++.+| .++.+
T Consensus 486 ~~~~~~~l~~L~~L~l~~n-~l~~~ 509 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASN-QLKSV 509 (570)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred ChhhhhcccCCCEEeCCCC-cCCCC
Confidence 6754 578899999887 44444
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=166.19 Aligned_cols=210 Identities=17% Similarity=0.181 Sum_probs=149.1
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCC-C-
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSN-F- 219 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~-~- 219 (660)
.++.+.+..+.+. .+...+|.++++|+.|++++|.+. ...+..+..++ +|++|++++|.++.+|.. +
T Consensus 53 ~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 53 AVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGIN--------TIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp TCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCC--------EECTTTTTTCT-TCCEEECCSSCCSSCCHHHHT
T ss_pred cCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccC--------ccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhC
Confidence 4555555544443 455667888999999999888774 23345677777 899999999988888866 4
Q ss_pred CCCCceEEeCCCCCCccccC--------CCeeecCCCC-CCcccC-ccccCCCCCcEEEecCCCCcCC-CCCCCCCCCCC
Q 039656 220 DPENLIALNLPYSKVEQIWK--------GEKYLNVDGS-AISHLP-SSIADLNKLEDLSFFGCKASVL-PRVLSGLSSLK 288 (660)
Q Consensus 220 ~l~~L~~L~L~~n~l~~l~~--------~l~~L~l~~~-~l~~lp-~si~~L~~L~~L~l~~~~~~~l-p~~l~~L~~L~ 288 (660)
.+++|++|++++|+++.++. .++.|++++| .+..++ ..++.+++|++|++++|.+..+ |..+.++++|+
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 78889999999988876644 5678888887 477664 5788888999999999887655 77788888999
Q ss_pred EEEccCCCCCCCCccc-CCCcccCccccccccceecch----hhhcCCCCCeecccCccCCC----CCCCC---CcCCcE
Q 039656 289 WMELRDCDLIKIPQDI-GSLSSLEWFVLSGNNFEHLPA----SIKKLSRLTYLNLSGCNMLR----SLPEL---PIRLIC 356 (660)
Q Consensus 289 ~L~Ls~~~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp~----~i~~l~~L~~L~L~~c~~l~----~lp~~---~~~L~~ 356 (660)
+|++++|.+..+|..+ ..+++|+.|++++|.++.++. .....+.++.++++++.... .+|+. +++|+.
T Consensus 202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281 (353)
T ss_dssp EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence 9999998887776543 457888999999888875431 12334556666666654332 23321 456777
Q ss_pred EecccC
Q 039656 357 LDARNC 362 (660)
Q Consensus 357 L~l~~c 362 (660)
|+++++
T Consensus 282 L~Ls~N 287 (353)
T 2z80_A 282 LEFSRN 287 (353)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 777665
No 70
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.67 E-value=4.5e-16 Score=171.45 Aligned_cols=186 Identities=22% Similarity=0.275 Sum_probs=140.8
Q ss_pred cccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccc----
Q 039656 162 TFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQI---- 237 (660)
Q Consensus 162 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l---- 237 (660)
.+.++++|+.|++++|.+.+ + ..+..++ +|++|++++|.+..++....+++|++|++++|.++.+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~---------~-~~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 240 (466)
T 1o6v_A 172 PLANLTTLERLDISSNKVSD---------I-SVLAKLT-NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 240 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCC---------C-GGGGGCT-TCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGG
T ss_pred hhccCCCCCEEECcCCcCCC---------C-hhhccCC-CCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhh
Confidence 47888888888888887642 2 2355666 8888888888887766533678888888888887765
Q ss_pred -cCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccc
Q 039656 238 -WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLS 316 (660)
Q Consensus 238 -~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~ 316 (660)
.+.++.|++++|.+..++. +..+++|+.|++++|.+..+|. +..+++|+.|++++|.+.+++. ++.+++|+.|+++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLY 317 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECC
T ss_pred cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECc
Confidence 3567888888888887766 7788888888888888777776 7788888888888888887665 7778888888888
Q ss_pred cccceecchhhhcCCCCCeecccCccCCCCCCCC--CcCCcEEecccCc
Q 039656 317 GNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL--PIRLICLDARNCE 363 (660)
Q Consensus 317 ~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~ 363 (660)
+|+++.++. +..+++|+.|++++|+.. .++.+ +++|+.|++.+|.
T Consensus 318 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 318 FNNISDISP-VSSLTKLQRLFFYNNKVS-DVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SSCCSCCGG-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSC
T ss_pred CCcCCCchh-hccCccCCEeECCCCccC-CchhhccCCCCCEEeCCCCc
Confidence 888886664 778888888888887543 34433 5677888887763
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.66 E-value=1.2e-15 Score=172.06 Aligned_cols=120 Identities=14% Similarity=0.159 Sum_probs=83.2
Q ss_pred CcEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCC
Q 039656 141 IAIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFD 220 (660)
Q Consensus 141 ~~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 220 (660)
..++.+.+..+.+ ..+.+.+|.++++|++|++++|.++ ...|..+..++ +|++|++++|.++.+|.. .
T Consensus 52 ~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIR--------SLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-P 119 (562)
T ss_dssp TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCC--------EECTTTTTTCT-TCCEEECTTSCCCEECSC-C
T ss_pred CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCC--------cCCHHHhCCCC-CCCEEECCCCcCCccCcc-c
Confidence 3455554444443 3455678888999999999888874 23456677777 899999999988888877 8
Q ss_pred CCCceEEeCCCCCCcccc--------CCCeeecCCCCCCcccCccccCCCCC--cEEEecCCCC
Q 039656 221 PENLIALNLPYSKVEQIW--------KGEKYLNVDGSAISHLPSSIADLNKL--EDLSFFGCKA 274 (660)
Q Consensus 221 l~~L~~L~L~~n~l~~l~--------~~l~~L~l~~~~l~~lp~si~~L~~L--~~L~l~~~~~ 274 (660)
+++|++|++++|+++.++ +.++.|++++|.+... .+..+++| ++|++++|.+
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 888889999888887653 3567777777776642 23344444 6666655554
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=6.9e-16 Score=173.92 Aligned_cols=209 Identities=21% Similarity=0.234 Sum_probs=151.3
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCC-CCC-
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLP-SNF- 219 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP-~~~- 219 (660)
.++.+.+..+.+ ..+.+.+|.++++|++|++++|.+. ...+..+..++ +|++|++++|.+..+| ..+
T Consensus 29 ~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~--------~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 29 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQ--------TIEDGAYQSLS-HLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SCCEEECCSCCC--CEECTTTTTTCSSCCEEECTTCCCC--------EECTTTTTTCT-TCCEEECTTCCCCEECTTTTT
T ss_pred cccEEEccCCcc--CccChhHhhCCCCceEEECCCCcCC--------ccCcccccCch-hCCEEeCcCCcCCccCHhhhc
Confidence 455554444443 3455678889999999999888764 12345567777 8999999999888776 445
Q ss_pred CCCCceEEeCCCCCCccccC-------CCeeecCCCCCCcc--cCccccCCCCCcEEEecCCCCcCCC-CCCCCCCCC--
Q 039656 220 DPENLIALNLPYSKVEQIWK-------GEKYLNVDGSAISH--LPSSIADLNKLEDLSFFGCKASVLP-RVLSGLSSL-- 287 (660)
Q Consensus 220 ~l~~L~~L~L~~n~l~~l~~-------~l~~L~l~~~~l~~--lp~si~~L~~L~~L~l~~~~~~~lp-~~l~~L~~L-- 287 (660)
.+++|++|++++|+++.+++ .+++|++++|.+.. +|..++++++|++|++++|.+..++ ..+..+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 78899999999988887653 67888899988885 6888888999999999888876553 334444444
Q ss_pred --CEEEccCCCCCC------------------------------------------------------------------
Q 039656 288 --KWMELRDCDLIK------------------------------------------------------------------ 299 (660)
Q Consensus 288 --~~L~Ls~~~l~~------------------------------------------------------------------ 299 (660)
+.|++++|.+..
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l 257 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred hhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc
Confidence 455555554433
Q ss_pred ----------------CCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC-CcCCcEEecccC
Q 039656 300 ----------------IPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL-PIRLICLDARNC 362 (660)
Q Consensus 300 ----------------lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-~~~L~~L~l~~c 362 (660)
+|..++.+++|+.|++++|.++.+|..+..+ +|+.|++++|... .+|.. +++|+.|++.++
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n 335 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESC
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCC
Confidence 2334555678888888888888888888888 8999999887755 66644 677888888765
Q ss_pred c
Q 039656 363 E 363 (660)
Q Consensus 363 ~ 363 (660)
.
T Consensus 336 ~ 336 (570)
T 2z63_A 336 K 336 (570)
T ss_dssp B
T ss_pred c
Confidence 4
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=9.9e-17 Score=166.99 Aligned_cols=187 Identities=16% Similarity=0.069 Sum_probs=133.9
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCcc--ccCCcCceEEEeeCCCCCCCCCC-----C-CCCCceEEeCCCCCCcc
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGL--EYLPEELRYLHWYGYPLRTLPSN-----F-DPENLIALNLPYSKVEQ 236 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l--~~l~~~Lr~L~l~~~~l~~lP~~-----~-~l~~L~~L~L~~n~l~~ 236 (660)
.+++|+.|++++|.+.+ ..|..+ ..++ +|++|++++|.+...... + .+++|++|++++|++..
T Consensus 89 ~~~~L~~L~l~~n~l~~--------~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 159 (310)
T 4glp_A 89 AYSRLKELTLEDLKITG--------TMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA 159 (310)
T ss_dssp HHSCCCEEEEESCCCBS--------CCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC
T ss_pred ccCceeEEEeeCCEecc--------chhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch
Confidence 45679999999888752 445555 5666 899999999988643221 1 57889999999988876
Q ss_pred cc-------CCCeeecCCCCCCcc---cC--ccccCCCCCcEEEecCCCCcCCCCC----CCCCCCCCEEEccCCCCCCC
Q 039656 237 IW-------KGEKYLNVDGSAISH---LP--SSIADLNKLEDLSFFGCKASVLPRV----LSGLSSLKWMELRDCDLIKI 300 (660)
Q Consensus 237 l~-------~~l~~L~l~~~~l~~---lp--~si~~L~~L~~L~l~~~~~~~lp~~----l~~L~~L~~L~Ls~~~l~~l 300 (660)
++ +.+++|++++|.+.. ++ ..++.+++|++|++++|.+..+|.. +.++++|++|+|++|.+..+
T Consensus 160 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 160 FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 54 356788888887653 33 2346788888888888887665542 45678888888888888874
Q ss_pred -CcccCCC---cccCccccccccceecchhhhcCCCCCeecccCccCCC-CCCCCCcCCcEEecccC
Q 039656 301 -PQDIGSL---SSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLR-SLPELPIRLICLDARNC 362 (660)
Q Consensus 301 -p~~l~~l---~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~-~lp~~~~~L~~L~l~~c 362 (660)
|+.++.+ ++|++|+|++|+++.+|..+. ++|+.|+|++|+..+ ..+..+++|+.|++.++
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred chhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 7777666 588888888888888887664 788888888876554 23344667777776654
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.65 E-value=1.6e-15 Score=175.03 Aligned_cols=209 Identities=22% Similarity=0.211 Sum_probs=111.4
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCC-C-
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSN-F- 219 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~-~- 219 (660)
.++.+.+..+.+ ..+.+.+|.++++|++|++++|.+.+ ..|..+..++ +|++|++++|.+..+|.. +
T Consensus 26 ~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 26 NITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISK--------LEPELCQKLP-MLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp TCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCC--------CCTTHHHHCT-TCCEEECCSSCCCCCCTTTTT
T ss_pred CCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCc--------cCHHHHhccc-CcCEEECCCCccCccChhhhc
Confidence 344444433333 23444556666667777766666532 2234445555 566666666666655543 3
Q ss_pred CCCCceEEeCCCCCCcccc-------CCCeeecCCCCCCccc-CccccCCCCCcEEEecCCCCcCCCCC---CCCCCCCC
Q 039656 220 DPENLIALNLPYSKVEQIW-------KGEKYLNVDGSAISHL-PSSIADLNKLEDLSFFGCKASVLPRV---LSGLSSLK 288 (660)
Q Consensus 220 ~l~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~~l-p~si~~L~~L~~L~l~~~~~~~lp~~---l~~L~~L~ 288 (660)
.+++|++|++++|+++.++ ++++.|++++|.+..+ |..++++++|++|++++|.+..+++. ...+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 5566666666666555543 2345566666655543 33455566666666666555444321 11234444
Q ss_pred EEEccCCCCC---------------------------------------------------C-CCcccCCCcc--cCccc
Q 039656 289 WMELRDCDLI---------------------------------------------------K-IPQDIGSLSS--LEWFV 314 (660)
Q Consensus 289 ~L~Ls~~~l~---------------------------------------------------~-lp~~l~~l~~--L~~L~ 314 (660)
.|++++|.+. + .|..+..++. |+.|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 4444444444 3 2334444433 66666
Q ss_pred cccccceecc-hhhhcCCCCCeecccCccCCCCCCCC---CcCCcEEeccc
Q 039656 315 LSGNNFEHLP-ASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARN 361 (660)
Q Consensus 315 L~~n~l~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~ 361 (660)
+++|.++.++ ..++.+++|++|++++|...+..|.. +++|+.|++.+
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 6666666443 45666677777777766655554433 45566666554
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.8e-15 Score=154.43 Aligned_cols=168 Identities=20% Similarity=0.269 Sum_probs=143.6
Q ss_pred cccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc-----CCCeeecCCCCCCcccCcc-ccCCCCCcEEE
Q 039656 195 LEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW-----KGEKYLNVDGSAISHLPSS-IADLNKLEDLS 268 (660)
Q Consensus 195 l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~-----~~l~~L~l~~~~l~~lp~s-i~~L~~L~~L~ 268 (660)
...++ +|+.|+++++.++.++....+++|++|++++|.++.+. +.+++|++++|.++.+|.. ++.+++|++|+
T Consensus 37 ~~~l~-~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 37 QNELN-SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHHT-TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccc-ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 34455 89999999999999886558999999999999998763 4789999999999988764 68999999999
Q ss_pred ecCCCCcCCCCC-CCCCCCCCEEEccCCCCCCCCcc-cCCCcccCccccccccceecchh-hhcCCCCCeecccCccCCC
Q 039656 269 FFGCKASVLPRV-LSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFEHLPAS-IKKLSRLTYLNLSGCNMLR 345 (660)
Q Consensus 269 l~~~~~~~lp~~-l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~l~ 345 (660)
+++|.+..+|.. +.++++|++|+|++|.+..+|+. ++.+++|+.|++++|+++.+|.. ++.+++|+.|++++|+..+
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 999998888765 68999999999999999997664 68999999999999999987765 5889999999999998766
Q ss_pred CCCCC---CcCCcEEecccCc
Q 039656 346 SLPEL---PIRLICLDARNCE 363 (660)
Q Consensus 346 ~lp~~---~~~L~~L~l~~c~ 363 (660)
..|.. +++|+.|++.+++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred cCHHHHhCCcCCCEEEccCCC
Confidence 55543 5788888888764
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=9.1e-17 Score=178.05 Aligned_cols=192 Identities=17% Similarity=0.144 Sum_probs=160.0
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc--CCCe
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW--KGEK 242 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~--~~l~ 242 (660)
.+++|+.|++++|.+.+ ..|..+..++ +|++|++++|.+..+++...+++|++|+|++|.++.++ +.++
T Consensus 32 ~~~~L~~L~Ls~n~l~~--------~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQ--------ISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCC--------CCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCC
T ss_pred cCCCccEEEeeCCcCCC--------CCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcC
Confidence 34589999999998852 3446788888 99999999999976665338999999999999999876 5789
Q ss_pred eecCCCCCCcccCccccCCCCCcEEEecCCCCcCC-CCCCCCCCCCCEEEccCCCCCC-CCcccC-CCcccCcccccccc
Q 039656 243 YLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVL-PRVLSGLSSLKWMELRDCDLIK-IPQDIG-SLSSLEWFVLSGNN 319 (660)
Q Consensus 243 ~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~l-p~~l~~L~~L~~L~Ls~~~l~~-lp~~l~-~l~~L~~L~L~~n~ 319 (660)
.|++++|.+..+|.. .+++|+.|++++|.+..+ |..++++++|+.|+|++|.+.+ .|..+. .+++|+.|+|++|.
T Consensus 103 ~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 999999999988763 578999999999998876 5578899999999999999998 566665 79999999999999
Q ss_pred ceecchhhhcCCCCCeecccCccCCCCCCCC--CcCCcEEecccCcCCcccC
Q 039656 320 FEHLPASIKKLSRLTYLNLSGCNMLRSLPEL--PIRLICLDARNCERLRTLQ 369 (660)
Q Consensus 320 l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~L~~l~ 369 (660)
++.+|. ...+++|+.|+|++|...+..|.+ +++|+.|+++++ .+..++
T Consensus 181 l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp 230 (487)
T 3oja_A 181 IYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIE 230 (487)
T ss_dssp CCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEEC
T ss_pred cccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-cCcccc
Confidence 998874 456999999999998866544443 678999999886 355444
No 77
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=6.3e-16 Score=173.53 Aligned_cols=180 Identities=21% Similarity=0.272 Sum_probs=146.7
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDP 221 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 221 (660)
.++.+.+....+.. ++... .++|+.|++++|.++ .+| ..++ +|++|++++|.++.+|. +.
T Consensus 60 ~L~~L~Ls~n~L~~--lp~~l---~~~L~~L~Ls~N~l~---------~ip---~~l~-~L~~L~Ls~N~l~~ip~-l~- 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPDNL---PPQITVLEITQNALI---------SLP---ELPA-SLEYLDACDNRLSTLPE-LP- 119 (571)
T ss_dssp TCSEEECCSSCCSC--CCSCC---CTTCSEEECCSSCCS---------CCC---CCCT-TCCEEECCSSCCSCCCC-CC-
T ss_pred CccEEEeCCCCCCc--cCHhH---cCCCCEEECcCCCCc---------ccc---cccC-CCCEEEccCCCCCCcch-hh-
Confidence 45555555544433 43333 378999999999874 455 2244 99999999999998998 52
Q ss_pred CCceEEeCCCCCCccccC---CCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCC
Q 039656 222 ENLIALNLPYSKVEQIWK---GEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLI 298 (660)
Q Consensus 222 ~~L~~L~L~~n~l~~l~~---~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~ 298 (660)
.+|++|+|++|+|+.++. .++.|++++|.++.+|. .+++|++|++++|.+..+|. +. ++|+.|+|++|.++
T Consensus 120 ~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 120 ASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS
T ss_pred cCCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC
Confidence 299999999999988764 67899999999999997 67899999999999999998 66 89999999999999
Q ss_pred CCCcccCCCccc-------CccccccccceecchhhhcCCCCCeecccCccCCCCCCCC
Q 039656 299 KIPQDIGSLSSL-------EWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL 350 (660)
Q Consensus 299 ~lp~~l~~l~~L-------~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~ 350 (660)
.+|. +.. +| +.|+|++|.|+.+|..+..+++|+.|+|++|+..+.+|..
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 9998 665 77 9999999999999999999999999999999988776654
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=2e-15 Score=152.14 Aligned_cols=161 Identities=22% Similarity=0.295 Sum_probs=136.6
Q ss_pred CceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc-------CCCeeecCCCCCCcccCc-cccCCCCCcEEEecCC
Q 039656 201 ELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW-------KGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGC 272 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~ 272 (660)
..+.++++++.++.+|..+. .+|+.|+|++|.+..+. +.++.|++++|.++.++. .+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 67889999999999998774 68999999999998774 467999999999998765 5789999999999999
Q ss_pred CCcCCCC-CCCCCCCCCEEEccCCCCCCCCcc-cCCCcccCccccccccceecch-hhhcCCCCCeecccCccCCCCCCC
Q 039656 273 KASVLPR-VLSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSGCNMLRSLPE 349 (660)
Q Consensus 273 ~~~~lp~-~l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~ 349 (660)
.+..+|. .+..+++|++|+|++|.+..+|.. +..+++|++|+|++|+++.+|. .++.+++|+.|+|++|+..+..|.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 9888874 468899999999999999997765 6889999999999999998887 588999999999999876544443
Q ss_pred C---CcCCcEEecccC
Q 039656 350 L---PIRLICLDARNC 362 (660)
Q Consensus 350 ~---~~~L~~L~l~~c 362 (660)
. +++|+.|++.++
T Consensus 174 ~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 174 AFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTTTCTTCCEEECCSC
T ss_pred HHhCCCCCCEEEeeCC
Confidence 3 466777777665
No 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=185.63 Aligned_cols=171 Identities=20% Similarity=0.194 Sum_probs=112.8
Q ss_pred CCccccCCcCceEEEeeCCCCCCCCCC-C-CCCCceEEeCCCCCCcccc--CCCeeecCCCCCCcccCc-----------
Q 039656 192 DQGLEYLPEELRYLHWYGYPLRTLPSN-F-DPENLIALNLPYSKVEQIW--KGEKYLNVDGSAISHLPS----------- 256 (660)
Q Consensus 192 p~~l~~l~~~Lr~L~l~~~~l~~lP~~-~-~l~~L~~L~L~~n~l~~l~--~~l~~L~l~~~~l~~lp~----------- 256 (660)
|..+..++ +|++|++++|.+..++.. + .+++|++|+|++|.++.++ +.++.|.+++|.+..+|.
T Consensus 331 ~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls 409 (844)
T 3j0a_A 331 SSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409 (844)
T ss_dssp SCSCSSCT-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECC
T ss_pred HHHhcCCC-CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecc
Confidence 33444444 555555555555555432 2 4555666665555555432 233444444444443332
Q ss_pred -----------cccCCCCCcEEEecCCCCcCCCCC--CCCCCCCCEEEccCCCCCC------CCcccCCCcccCcccccc
Q 039656 257 -----------SIADLNKLEDLSFFGCKASVLPRV--LSGLSSLKWMELRDCDLIK------IPQDIGSLSSLEWFVLSG 317 (660)
Q Consensus 257 -----------si~~L~~L~~L~l~~~~~~~lp~~--l~~L~~L~~L~Ls~~~l~~------lp~~l~~l~~L~~L~L~~ 317 (660)
.++++++|++|++++|.+..++.. +..+++|+.|+|++|.+.. .|..+..+++|+.|+|++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 134678888888888887665432 5567888888888888764 335688899999999999
Q ss_pred ccceecchh-hhcCCCCCeecccCccCCCCCCCC-CcCCcEEecccCc
Q 039656 318 NNFEHLPAS-IKKLSRLTYLNLSGCNMLRSLPEL-PIRLICLDARNCE 363 (660)
Q Consensus 318 n~l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~-~~~L~~L~l~~c~ 363 (660)
|+++.+|.. +..+++|+.|+|++|+...-.|.. +++|+.|+++++.
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEEC
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCc
Confidence 999977654 789999999999998755433333 5889999998863
No 80
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=1.6e-15 Score=170.27 Aligned_cols=169 Identities=22% Similarity=0.250 Sum_probs=143.9
Q ss_pred CccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccC---CCeee
Q 039656 168 NLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWK---GEKYL 244 (660)
Q Consensus 168 ~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~---~l~~L 244 (660)
+|+.|++++|.++ .+|..+. ++|++|++++|.++.+| -.+++|++|++++|+|+.++. +++.|
T Consensus 60 ~L~~L~Ls~n~L~---------~lp~~l~---~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLS---------SLPDNLP---PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPASLKHL 125 (571)
T ss_dssp TCSEEECCSSCCS---------CCCSCCC---TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred CccEEEeCCCCCC---------ccCHhHc---CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhcCCCEE
Confidence 8999999999874 3666553 48999999999999999 347999999999999988764 78999
Q ss_pred cCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecc
Q 039656 245 NVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLP 324 (660)
Q Consensus 245 ~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 324 (660)
++++|.++.+|. .+++|++|++++|.+..+|. .+++|+.|+|++|.+..+|. ++ ++|+.|+|++|+|+.+|
T Consensus 126 ~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 126 DVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCC
T ss_pred ECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchh
Confidence 999999999998 78999999999999999987 67899999999999999998 76 89999999999999999
Q ss_pred hhhhcCCCC-------CeecccCccCCCCCCCC---CcCCcEEecccCc
Q 039656 325 ASIKKLSRL-------TYLNLSGCNMLRSLPEL---PIRLICLDARNCE 363 (660)
Q Consensus 325 ~~i~~l~~L-------~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~ 363 (660)
. +.. +| +.|+|++|+. ..+|.. +++|+.|++.+++
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp C-CC----------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSS
T ss_pred h-HHH--hhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCc
Confidence 7 654 77 9999999864 568864 5677777777653
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=1.3e-15 Score=171.02 Aligned_cols=195 Identities=16% Similarity=0.233 Sum_probs=145.5
Q ss_pred cccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC--CCCCceEEeCCCCCCccc--
Q 039656 162 TFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF--DPENLIALNLPYSKVEQI-- 237 (660)
Q Consensus 162 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~--~l~~L~~L~L~~n~l~~l-- 237 (660)
.+..+.+|+.|.+.++.+..... ...++... ....+|+.|++++|.++.+|..+ .+++|++|++++|++.+.
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~---~~~l~~~~-~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~ 351 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYL---FYDLSTVY-SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGG---SCCCCHHH-HHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred hhhhhcccccccccccccchhhh---cccchhhh-hhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccc
Confidence 45678889999998776532100 01111111 22237889999999888888776 588899999999988752
Q ss_pred --------cCCCeeecCCCCCCcccCc---cccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCC
Q 039656 238 --------WKGEKYLNVDGSAISHLPS---SIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGS 306 (660)
Q Consensus 238 --------~~~l~~L~l~~~~l~~lp~---si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~ 306 (660)
.+.++.|++++|.++.+|. .++.+++|++|++++|.+..+|..+..+++|++|++++|.+..+|..+.
T Consensus 352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~- 430 (549)
T 2z81_A 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP- 430 (549)
T ss_dssp HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC-
T ss_pred cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc-
Confidence 3578888999999887763 4788899999999999888888888888999999999998888776553
Q ss_pred CcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC--CcCCcEEecccCcCCcc
Q 039656 307 LSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL--PIRLICLDARNCERLRT 367 (660)
Q Consensus 307 l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~L~~ 367 (660)
++|++|++++|+++.++ ..+++|+.|+|++|+. +.+|.. +++|+.|+++++ .++.
T Consensus 431 -~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l-~~ip~~~~l~~L~~L~Ls~N-~l~~ 487 (549)
T 2z81_A 431 -QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKL-KTLPDASLFPVLLVMKISRN-QLKS 487 (549)
T ss_dssp -TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SSCCCGGGCTTCCEEECCSS-CCCC
T ss_pred -CCceEEECCCCChhhhc---ccCChhcEEECCCCcc-CcCCCcccCccCCEEecCCC-ccCC
Confidence 57888888888888765 4778888888888754 477764 677888888876 3443
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=9.6e-16 Score=171.03 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=74.2
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDP 221 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 221 (660)
.++.+.+..+.+ ..+.+.+|.++++|++|++++|.+. ...|..+..++ +|++|++++|.++.+|.. .+
T Consensus 22 ~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l 89 (520)
T 2z7x_B 22 KTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQ--------YLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PT 89 (520)
T ss_dssp TCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCC--------EEEGGGGTTCT-TCCEEECCSSCCCEEECC-CC
T ss_pred cccEEECCCCcc--cccChhhccccccccEEecCCCccC--------CcChHHhhccc-CCCEEecCCCceeecCcc-cc
Confidence 344444443333 3344566777777777777777664 23355666666 777777777777777766 67
Q ss_pred CCceEEeCCCCCCccc--------cCCCeeecCCCCCCcccCccccCCCCC--cEEEecCCCC
Q 039656 222 ENLIALNLPYSKVEQI--------WKGEKYLNVDGSAISHLPSSIADLNKL--EDLSFFGCKA 274 (660)
Q Consensus 222 ~~L~~L~L~~n~l~~l--------~~~l~~L~l~~~~l~~lp~si~~L~~L--~~L~l~~~~~ 274 (660)
++|++|++++|.++.+ .+.+++|++++|.+.. ..+..+++| ++|++++|.+
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 7777777777776653 1245666677666654 235555555 6666666654
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=2.2e-15 Score=159.56 Aligned_cols=207 Identities=17% Similarity=0.170 Sum_probs=141.7
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCC-ccccCCcCceEEEeeCCCCCCCCCC-C
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQ-GLEYLPEELRYLHWYGYPLRTLPSN-F 219 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~-~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 219 (660)
.++.+.+..+.+. .+++++|.++++|+.|+|++|.+. ..+|. .+..++.-++.+.+.+|.+..+|.. +
T Consensus 31 ~l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~i~--------~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 31 NAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVL--------EVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp TCSEEEEESCCCS--EECTTSSTTCTTCCEEEEECCTTC--------CEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred CCCEEEccCCcCC--CcCHHHHcCCCCCCEEECcCCCCC--------CccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 4555666655554 466778899999999999988763 23443 4566773445677777888888644 4
Q ss_pred -CCCCceEEeCCCCCCccccCC-------CeeecC-CCCCCcccCc-cccCC-CCCcEEEecCCCCcCCCCCCCCCCCCC
Q 039656 220 -DPENLIALNLPYSKVEQIWKG-------EKYLNV-DGSAISHLPS-SIADL-NKLEDLSFFGCKASVLPRVLSGLSSLK 288 (660)
Q Consensus 220 -~l~~L~~L~L~~n~l~~l~~~-------l~~L~l-~~~~l~~lp~-si~~L-~~L~~L~l~~~~~~~lp~~l~~L~~L~ 288 (660)
.+++|++|++++|+++.+++. +..|++ +++.+..+|. .+..+ ..|++|++++|.+..+|.......+|+
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchh
Confidence 788899999988888776542 244554 4466777765 34444 357778888888777777777777788
Q ss_pred EEEccC-CCCCCCCc-ccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC--CcCCcEEecc
Q 039656 289 WMELRD-CDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL--PIRLICLDAR 360 (660)
Q Consensus 289 ~L~Ls~-~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~ 360 (660)
.|++.+ |.+..+|. .+..+++|+.|+|++|+++.+|.. .+.+|+.|.+.+|..++.+|.+ +++|+.+++.
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 888764 55666765 457788888888888888877753 3666777777777777777754 4566666554
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=6e-16 Score=175.36 Aligned_cols=167 Identities=25% Similarity=0.331 Sum_probs=120.6
Q ss_pred cCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc-----
Q 039656 164 TSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW----- 238 (660)
Q Consensus 164 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~----- 238 (660)
..+++|+.|++.+|.+. .++ .+..++ +|+.|++++|.+..+|....+++|+.|+|++|.+..++
T Consensus 40 ~~L~~L~~L~l~~n~i~---------~l~-~l~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l 108 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK---------SVQ-GIQYLP-NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDL 108 (605)
T ss_dssp HHHTTCCCCBCTTCCCC---------CCT-TGGGCT-TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTC
T ss_pred hcCCCCCEEECcCCCCC---------CCh-HHccCC-CCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccC
Confidence 34555666666555542 222 345555 66666666666665555225666666666666655442
Q ss_pred CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccc
Q 039656 239 KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGN 318 (660)
Q Consensus 239 ~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n 318 (660)
+.|+.|++++|.+..+| .+..|++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|
T Consensus 109 ~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC
Confidence 34566666666666664 488899999999999998887 458899999999999999988766 889999999999999
Q ss_pred cceecchhhhcCCCCCeecccCccCCC
Q 039656 319 NFEHLPASIKKLSRLTYLNLSGCNMLR 345 (660)
Q Consensus 319 ~l~~lp~~i~~l~~L~~L~L~~c~~l~ 345 (660)
.++.+| .+..+++|+.|+|++|+...
T Consensus 186 ~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 999886 58889999999999887654
No 85
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=1.7e-15 Score=169.97 Aligned_cols=187 Identities=21% Similarity=0.257 Sum_probs=145.6
Q ss_pred CCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCC-CCC-CCCCceEEeCCCCCCcccc------
Q 039656 167 SNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLP-SNF-DPENLIALNLPYSKVEQIW------ 238 (660)
Q Consensus 167 ~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP-~~~-~l~~L~~L~L~~n~l~~l~------ 238 (660)
++|+.|++++|.++ ...|..+..++ +|++|++++|.+..+| ..+ .+++|++|++++|+++.++
T Consensus 26 ~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFNKIT--------YIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp TTCCEEECCSSCCC--------EECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCccEEECcCCccC--------ccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 57888888888764 23355667776 7888888888887666 345 7788888888888877664
Q ss_pred -CCCeeecCCCCCCcc--cCccccCCCCCcEEEecCCC-CcCCC-CCCCCCCCCCEEEccCCCCCC-CCcccCCCcccCc
Q 039656 239 -KGEKYLNVDGSAISH--LPSSIADLNKLEDLSFFGCK-ASVLP-RVLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEW 312 (660)
Q Consensus 239 -~~l~~L~l~~~~l~~--lp~si~~L~~L~~L~l~~~~-~~~lp-~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~ 312 (660)
+.+++|++++|.++. +|..++++++|++|++++|. ...+| ..+.++++|++|++++|.+.+ .|..++.+++|+.
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 356788888888874 46788999999999999998 66776 478899999999999999988 7888999999999
Q ss_pred cccccccceecchhh-hcCCCCCeecccCccCCCC------CCCCCcCCcEEecccC
Q 039656 313 FVLSGNNFEHLPASI-KKLSRLTYLNLSGCNMLRS------LPELPIRLICLDARNC 362 (660)
Q Consensus 313 L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~~l~~------lp~~~~~L~~L~l~~c 362 (660)
|+++.|.+..+|..+ ..+++|++|++++|+..+. +...+++|+.|++.++
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 999999988888765 5689999999999876652 1233566777776654
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.62 E-value=4.4e-15 Score=175.63 Aligned_cols=212 Identities=20% Similarity=0.220 Sum_probs=163.9
Q ss_pred EEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCC-CCCC-C
Q 039656 143 IEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTL-PSNF-D 220 (660)
Q Consensus 143 v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~l-P~~~-~ 220 (660)
++.+.+ +......+.+..|..+++|+.|++++|.+. ...|..+..++ +|++|++++|.+..+ |..+ .
T Consensus 268 L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 268 VRHLDL--SHGFVFSLNSRVFETLKDLKVLNLAYNKIN--------KIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp CCEEEC--TTCCCCEECSCCSSSCCCCCEEEEESCCCC--------EECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSS
T ss_pred ccEEEC--CCCcccccChhhhhcCCCCCEEECCCCcCC--------CCChHHhcCCC-CCCEEECCCCCCCccCHHHhcC
Confidence 444433 333333455778999999999999999875 24456777787 999999999999776 5566 8
Q ss_pred CCCceEEeCCCCCCcccc-------CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCC-------------
Q 039656 221 PENLIALNLPYSKVEQIW-------KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRV------------- 280 (660)
Q Consensus 221 l~~L~~L~L~~n~l~~l~-------~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~------------- 280 (660)
+++|+.|++++|++..++ +.++.|++++|.++.++. +++|+.|++++|++..+|..
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecccCc
Confidence 999999999999988764 467899999999987764 77888888888887776643
Q ss_pred ---------CCCCCCCCEEEccCCCCCCCCc--ccCCCcccCccccccccceec------chhhhcCCCCCeecccCccC
Q 039656 281 ---------LSGLSSLKWMELRDCDLIKIPQ--DIGSLSSLEWFVLSGNNFEHL------PASIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 281 ---------l~~L~~L~~L~Ls~~~l~~lp~--~l~~l~~L~~L~L~~n~l~~l------p~~i~~l~~L~~L~L~~c~~ 343 (660)
+.++++|+.|+|++|++..++. .+..+++|+.|++++|.++.+ |..+..+++|+.|+|++|..
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence 3368899999999999887544 356688999999999988633 34578899999999999987
Q ss_pred CCCCCCC---CcCCcEEecccCcCCcccCC
Q 039656 344 LRSLPEL---PIRLICLDARNCERLRTLQE 370 (660)
Q Consensus 344 l~~lp~~---~~~L~~L~l~~c~~L~~l~~ 370 (660)
.+..|.. +++|+.|+++++ +|+.++.
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 521 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSN-RLTVLSH 521 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESC-CCSSCCC
T ss_pred cccChhHccchhhhheeECCCC-CCCccCh
Confidence 7666654 688999999987 5665543
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=2e-15 Score=155.69 Aligned_cols=161 Identities=23% Similarity=0.237 Sum_probs=140.1
Q ss_pred cCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc-----CCCeeecCCCCCCcccCccccCCCCCcEEEecC
Q 039656 197 YLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW-----KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFG 271 (660)
Q Consensus 197 ~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~-----~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~ 271 (660)
.++ +|++|++++|.++.+|..-.+++|++|++++|+++.++ +.++.|++++|.++.+|. +..+++|++|++++
T Consensus 44 ~l~-~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 44 ELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp HHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred hcC-cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence 455 89999999999999986448999999999999998774 467999999999999876 99999999999999
Q ss_pred CCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCC-
Q 039656 272 CKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPEL- 350 (660)
Q Consensus 272 ~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~- 350 (660)
|.+..++ .+..+++|+.|++++|.+..+ +.++.+++|+.|++++|.++.++. +..+++|+.|+|++|.. ..+|.+
T Consensus 122 n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i-~~l~~l~ 197 (291)
T 1h6t_A 122 NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI-SDLRALA 197 (291)
T ss_dssp SCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CBCGGGT
T ss_pred CcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC-CCChhhc
Confidence 9988875 488999999999999999988 578999999999999999998886 99999999999999864 456654
Q ss_pred -CcCCcEEecccCc
Q 039656 351 -PIRLICLDARNCE 363 (660)
Q Consensus 351 -~~~L~~L~l~~c~ 363 (660)
+++|+.|++.+++
T Consensus 198 ~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 198 GLKNLDVLELFSQE 211 (291)
T ss_dssp TCTTCSEEEEEEEE
T ss_pred cCCCCCEEECcCCc
Confidence 6678888887763
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.3e-15 Score=147.53 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=122.2
Q ss_pred cCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCee
Q 039656 164 TSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKY 243 (660)
Q Consensus 164 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~ 243 (660)
.++++|+.|++++|.+. .+| ++..++ +|++|++++|.+..++....+++|++|++++|.++.
T Consensus 41 ~~l~~L~~L~l~~n~i~---------~l~-~l~~l~-~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~------- 102 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT---------DLT-GIEYAH-NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS------- 102 (197)
T ss_dssp HHHHTCCEEEEESSCCS---------CCT-TGGGCT-TCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBG-------
T ss_pred hhcCCccEEeccCCCcc---------ChH-HHhcCC-CCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCc-------
Confidence 56788999999988773 455 577777 899999999988777643478888888888877653
Q ss_pred ecCCCCCCcccCccccCCCCCcEEEecCCCCcC-CCCCCCCCCCCCEEEccCCC-CCCCCcccCCCcccCccccccccce
Q 039656 244 LNVDGSAISHLPSSIADLNKLEDLSFFGCKASV-LPRVLSGLSSLKWMELRDCD-LIKIPQDIGSLSSLEWFVLSGNNFE 321 (660)
Q Consensus 244 L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~-lp~~l~~L~~L~~L~Ls~~~-l~~lp~~l~~l~~L~~L~L~~n~l~ 321 (660)
..|..++.+++|++|++++|.+.. .|..+..+++|++|++++|. +..+| .+..+++|+.|++++|.++
T Consensus 103 ---------~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 103 ---------DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp ---------GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred ---------ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 245668888999999999998774 56778899999999999998 77776 6888999999999999999
Q ss_pred ecchhhhcCCCCCeecccCccC
Q 039656 322 HLPASIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 322 ~lp~~i~~l~~L~~L~L~~c~~ 343 (660)
.++ .+..+++|+.|++++|+.
T Consensus 173 ~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 173 DYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCT-TGGGCSSCCEEEECBC--
T ss_pred ChH-HhccCCCCCEEEeeCccc
Confidence 887 788899999999998864
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=3.5e-15 Score=145.76 Aligned_cols=131 Identities=23% Similarity=0.313 Sum_probs=79.4
Q ss_pred CceEEEeeCCCCCCCCCCC--CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCc-cccCCCCCcEEEecCCCCcCC
Q 039656 201 ELRYLHWYGYPLRTLPSNF--DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKASVL 277 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~--~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~l 277 (660)
+|++|++++|.++.+|... .+++|++|++++|++ +.+|. .+..+++|++|++++|.+..+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----------------~~~~~~~~~~l~~L~~L~L~~N~l~~~ 115 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-----------------QSLPNGVFDKLTQLKELALNTNQLQSL 115 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-----------------CCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-----------------CccCHhHhcCccCCCEEEcCCCcCccc
Confidence 4555555555554444322 344444444444433 34443 356677777777777776666
Q ss_pred CCC-CCCCCCCCEEEccCCCCCCCCcc-cCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCCCCcCC
Q 039656 278 PRV-LSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPELPIRL 354 (660)
Q Consensus 278 p~~-l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~~~~L 354 (660)
|.. +.++++|++|+|++|.+.++|.. +..+++|+.|++++|.+. +.+++|+.|++..|+..+.+|..+.++
T Consensus 116 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 116 PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 554 56677777777777777775554 666777777777777554 334567777777777777777654443
No 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=7.4e-18 Score=189.84 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=146.1
Q ss_pred cCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCC--------------CCCCCCCC-CCCCceEEe
Q 039656 164 TSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYP--------------LRTLPSNF-DPENLIALN 228 (660)
Q Consensus 164 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~--------------l~~lP~~~-~l~~L~~L~ 228 (660)
...++|+.|++++|.+ ..+|..+..++ +|+.|++++|. .+..|..+ .+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L---------~~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS---------TVLQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp STTTTSSSCCCCHHHH---------HHHHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred ccCccceeccCChhhH---------HhhHHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCc
Confidence 4577888888887765 36788888887 78888876552 23334444 566777777
Q ss_pred -CCCCCC-------------ccc-cCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEcc
Q 039656 229 -LPYSKV-------------EQI-WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELR 293 (660)
Q Consensus 229 -L~~n~l-------------~~l-~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls 293 (660)
++.|.+ ..+ +..++.|++++|.++.+|. ++.+++|+.|++++|.+..+|..++++++|+.|+|+
T Consensus 416 ~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS 494 (567)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC
T ss_pred chhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECC
Confidence 444433 332 2367899999999999997 999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCCcccCccccccccceec--chhhhcCCCCCeecccCccCCCCCCCC------CcCCcEEe
Q 039656 294 DCDLIKIPQDIGSLSSLEWFVLSGNNFEHL--PASIKKLSRLTYLNLSGCNMLRSLPEL------PIRLICLD 358 (660)
Q Consensus 294 ~~~l~~lp~~l~~l~~L~~L~L~~n~l~~l--p~~i~~l~~L~~L~L~~c~~l~~lp~~------~~~L~~L~ 358 (660)
+|.++++| .++.+++|+.|+|++|+++.+ |..++.+++|+.|+|++|+..+..|.. +++|+.|+
T Consensus 495 ~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 495 DNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 99999998 899999999999999999987 899999999999999998866554432 45566554
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=2.1e-16 Score=169.68 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=155.2
Q ss_pred cccCCCCccEEEEecCCCCCcccCCcceecCCc-------cccCCcCceEEEeeCCCCCC-----CCCCC-CCCCceEEe
Q 039656 162 TFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQG-------LEYLPEELRYLHWYGYPLRT-----LPSNF-DPENLIALN 228 (660)
Q Consensus 162 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~-------l~~l~~~Lr~L~l~~~~l~~-----lP~~~-~l~~L~~L~ 228 (660)
.|.++++|+.|++++|.+... ...+|.+ +..++ +|++|++++|.++. +|..+ .+++|++|+
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l-----~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~ 128 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRV-----KDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSC-----GGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEE
T ss_pred HHHhCCCccEEeCcccccCcc-----ccchhHHHHHHHHHHhhCC-cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEE
Confidence 477899999999998765311 1123333 35666 99999999999876 66666 789999999
Q ss_pred CCCCCCccc-----c---------------CCCeeecCCCCCCc--ccC---ccccCCCCCcEEEecCCCCc------CC
Q 039656 229 LPYSKVEQI-----W---------------KGEKYLNVDGSAIS--HLP---SSIADLNKLEDLSFFGCKAS------VL 277 (660)
Q Consensus 229 L~~n~l~~l-----~---------------~~l~~L~l~~~~l~--~lp---~si~~L~~L~~L~l~~~~~~------~l 277 (660)
|++|.+... . +.++.|++++|.++ .+| ..+..+++|++|++++|.+. .+
T Consensus 129 L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~ 208 (386)
T 2ca6_A 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208 (386)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHH
Confidence 999998632 1 78999999999996 455 46778999999999999877 24
Q ss_pred CCCCCCCCCCCEEEccCCCCC-----CCCcccCCCcccCcccccccccee-----cchhhhc--CCCCCeecccCccCCC
Q 039656 278 PRVLSGLSSLKWMELRDCDLI-----KIPQDIGSLSSLEWFVLSGNNFEH-----LPASIKK--LSRLTYLNLSGCNMLR 345 (660)
Q Consensus 278 p~~l~~L~~L~~L~Ls~~~l~-----~lp~~l~~l~~L~~L~L~~n~l~~-----lp~~i~~--l~~L~~L~L~~c~~l~ 345 (660)
|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++. +|..+.. +++|+.|+|++|....
T Consensus 209 ~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 547889999999999999984 378888999999999999999884 4677744 9999999999998766
Q ss_pred ----CCCCC----CcCCcEEecccCc
Q 039656 346 ----SLPEL----PIRLICLDARNCE 363 (660)
Q Consensus 346 ----~lp~~----~~~L~~L~l~~c~ 363 (660)
.+|.. +++|+.|++.+|.
T Consensus 289 ~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHHhcCCCceEEEccCCc
Confidence 36653 4788888887763
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=4.6e-15 Score=168.09 Aligned_cols=163 Identities=23% Similarity=0.239 Sum_probs=143.5
Q ss_pred cccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc-----CCCeeecCCCCCCcccCccccCCCCCcEEEe
Q 039656 195 LEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW-----KGEKYLNVDGSAISHLPSSIADLNKLEDLSF 269 (660)
Q Consensus 195 l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~-----~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l 269 (660)
+..++ +|+.|++++|.+..+|....+++|+.|+|++|.+..++ +.|+.|++++|.+..+| .+..+++|+.|+|
T Consensus 39 ~~~L~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 39 QNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHHT-TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hhcCC-CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 34555 89999999999999986448999999999999998775 47899999999999987 5999999999999
Q ss_pred cCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCC
Q 039656 270 FGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPE 349 (660)
Q Consensus 270 ~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 349 (660)
++|.+..++. +..+++|+.|+|++|.+..+ ..++.+++|+.|+|++|.+..++. +..+++|+.|+|++|.. ..+|.
T Consensus 117 s~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i-~~l~~ 192 (605)
T 1m9s_A 117 EHNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI-SDLRA 192 (605)
T ss_dssp TTSCCCCCGG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CBCGG
T ss_pred cCCCCCCCcc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC-CCChH
Confidence 9999988764 89999999999999999998 678999999999999999998876 99999999999999865 44665
Q ss_pred C--CcCCcEEecccCc
Q 039656 350 L--PIRLICLDARNCE 363 (660)
Q Consensus 350 ~--~~~L~~L~l~~c~ 363 (660)
+ +++|+.|++.+|+
T Consensus 193 l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQE 208 (605)
T ss_dssp GTTCTTCSEEECCSEE
T ss_pred HccCCCCCEEEccCCc
Confidence 4 6789999998764
No 93
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=142.56 Aligned_cols=126 Identities=19% Similarity=0.276 Sum_probs=81.0
Q ss_pred CceEEEeeCCCCCCCCC-C-C-CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCc-cccCCCCCcEEEecCCCCcC
Q 039656 201 ELRYLHWYGYPLRTLPS-N-F-DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKASV 276 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~-~-~-~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~ 276 (660)
.+++|++++|.++.++. . + .+++|++|+|++|+|+ .++. .+..+++|++|++++|.+..
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-----------------~i~~~~~~~l~~L~~L~Ls~N~l~~ 95 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-----------------DIEEGAFEGASGVNEILLTSNRLEN 95 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-----------------EECTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-----------------EECHHHhCCCCCCCEEECCCCccCc
Confidence 45556666665555532 1 2 4555555555555443 3333 56777777777777777766
Q ss_pred CCCC-CCCCCCCCEEEccCCCCCCC-CcccCCCcccCccccccccceec-chhhhcCCCCCeecccCccC
Q 039656 277 LPRV-LSGLSSLKWMELRDCDLIKI-PQDIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 277 lp~~-l~~L~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~ 343 (660)
+|.. +.++++|++|+|++|.+..+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+.
T Consensus 96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 6543 66777777777777777774 55677777777777777777755 55667777777777777654
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=2e-14 Score=141.93 Aligned_cols=128 Identities=19% Similarity=0.377 Sum_probs=88.6
Q ss_pred cCceEEEeeCCCCCCCCC-CC-CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCC
Q 039656 200 EELRYLHWYGYPLRTLPS-NF-DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVL 277 (660)
Q Consensus 200 ~~Lr~L~l~~~~l~~lP~-~~-~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~l 277 (660)
++|+.|++++|.++.+|. .+ .+++|+.|+|++|+++.+ .|..+..+++|++|+|++|.+..+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL----------------APDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE----------------CTTTTTTCSSCCEEECCSSCCCCC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc----------------CHHHhhCCcCCCEEECCCCcCCcc
Confidence 356666666666665554 33 556666666665555422 255677778888888888887777
Q ss_pred CCC-CCCCCCCCEEEccCCCCCCC-CcccCCCcccCccccccccceecchh-hhcCCCCCeecccCccC
Q 039656 278 PRV-LSGLSSLKWMELRDCDLIKI-PQDIGSLSSLEWFVLSGNNFEHLPAS-IKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 278 p~~-l~~L~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 343 (660)
|.. +.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 765 46778888888888888774 45677788888888888888866653 67777888888877753
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=2.1e-14 Score=142.61 Aligned_cols=128 Identities=25% Similarity=0.301 Sum_probs=79.9
Q ss_pred cCceEEEeeCCCCCCCC-CCC-CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCc-cccCCCCCcEEEecCCCCcC
Q 039656 200 EELRYLHWYGYPLRTLP-SNF-DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKASV 276 (660)
Q Consensus 200 ~~Lr~L~l~~~~l~~lP-~~~-~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~ 276 (660)
.+|++|++++|.+..++ ..+ .+++|++|+|++|+|+ .+|. .+..+++|++|++++|.+..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-----------------~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-----------------ALPVGVFDSLTQLTVLDLGTNQLTV 102 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----------------CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-----------------CcChhhcccCCCcCEEECCCCcCCc
Confidence 35666666666665543 333 5556665555555443 3332 34666777777777777666
Q ss_pred CCCC-CCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecch-hhhcCCCCCeecccCccCC
Q 039656 277 LPRV-LSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSGCNML 344 (660)
Q Consensus 277 lp~~-l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~l 344 (660)
+|.. +..+++|+.|+|++|.+..+|..+..+++|++|+|++|+++.+|. .+..+++|+.|+|++|+..
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6544 456777777777777777777777777777777777777776653 3566677777777766543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=3e-14 Score=150.89 Aligned_cols=196 Identities=21% Similarity=0.216 Sum_probs=154.8
Q ss_pred CCccEEEEecCCCCCcccCCcceecCC-ccccCCcCceEEEeeCCCC-CCCCCC-C-CCCCceE-EeCCCCCCccccC--
Q 039656 167 SNLRLLKFYMPNRDGFSIMSSKVHLDQ-GLEYLPEELRYLHWYGYPL-RTLPSN-F-DPENLIA-LNLPYSKVEQIWK-- 239 (660)
Q Consensus 167 ~~Lr~L~l~~n~~~~~~~~~~~~~lp~-~l~~l~~~Lr~L~l~~~~l-~~lP~~-~-~l~~L~~-L~L~~n~l~~l~~-- 239 (660)
++++.|+|++|.++ .+|. .+..++ +|++|++++|.+ +.+|.. | ++.+|.+ +.+.+|+++.+++
T Consensus 30 ~~l~~L~Ls~N~i~---------~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTKLR---------VIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TTCSEEEEESCCCS---------EECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCCEEEccCCcCC---------CcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 57899999999874 6665 467777 899999999987 557754 4 6777665 5666788887743
Q ss_pred -----CCeeecCCCCCCcccCc-cccCCCCCcEEEecCCC-CcCCCC-CCCCCC-CCCEEEccCCCCCCCCcccCCCccc
Q 039656 240 -----GEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCK-ASVLPR-VLSGLS-SLKWMELRDCDLIKIPQDIGSLSSL 310 (660)
Q Consensus 240 -----~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~-~~~lp~-~l~~L~-~L~~L~Ls~~~l~~lp~~l~~l~~L 310 (660)
.+++|++++|.+..+|. .+....++..|++.++. +..+|. .+..+. .|+.|+|++|++..+|.......+|
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence 56888899999988876 44566778888887654 666664 355554 6899999999999999888888899
Q ss_pred Cccccc-cccceecchh-hhcCCCCCeecccCccCCCCCCC-CCcCCcEEecccCcCCcccCCCCC
Q 039656 311 EWFVLS-GNNFEHLPAS-IKKLSRLTYLNLSGCNMLRSLPE-LPIRLICLDARNCERLRTLQELPS 373 (660)
Q Consensus 311 ~~L~L~-~n~l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~-~~~~L~~L~l~~c~~L~~l~~~~~ 373 (660)
+.|+++ +|.++.+|.. +..+++|+.|+|++|+ ++.+|. .+.+|+.|.+.++.+|+.++.+..
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTT
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchh
Confidence 999998 5788899965 6899999999999885 667775 489999999999999998886443
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=1.8e-15 Score=153.73 Aligned_cols=151 Identities=21% Similarity=0.311 Sum_probs=108.3
Q ss_pred cccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCC
Q 039656 162 TFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGE 241 (660)
Q Consensus 162 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l 241 (660)
.+..+++|+.|++++|.+. .++ .+..++ +|++|++++|.+..+|....+++|++|++++|+++.
T Consensus 36 ~~~~l~~L~~L~l~~n~i~---------~l~-~l~~l~-~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~----- 99 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQ---------SLA-GMQFFT-NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN----- 99 (263)
T ss_dssp CHHHHTTCSEEECTTSCCC---------CCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-----
T ss_pred chhhcCcCcEEECcCCCcc---------cch-HHhhCC-CCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-----
Confidence 4566777777777777653 333 456666 777777777777777662266777777776666543
Q ss_pred eeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccce
Q 039656 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFE 321 (660)
Q Consensus 242 ~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~ 321 (660)
+|. +.. ++|++|++++|.+..++. +..+++|+.|+|++|++.++| .++.+++|+.|++++|.++
T Consensus 100 ------------l~~-~~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 100 ------------LNG-IPS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ------------CTT-CCC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCC
T ss_pred ------------cCc-ccc-CcccEEEccCCccCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCc
Confidence 333 222 788888888888777764 788888888888888888875 6778888888888888888
Q ss_pred ecchhhhcCCCCCeecccCccCCC
Q 039656 322 HLPASIKKLSRLTYLNLSGCNMLR 345 (660)
Q Consensus 322 ~lp~~i~~l~~L~~L~L~~c~~l~ 345 (660)
.+ ..+..+++|+.|++++|+...
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred ch-HHhccCCCCCEEeCCCCcccC
Confidence 77 467788888888888876544
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=9.9e-15 Score=148.23 Aligned_cols=148 Identities=24% Similarity=0.286 Sum_probs=120.8
Q ss_pred cEEEEEeecCCCeeeecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCC
Q 039656 142 AIEGIFLDMSKIRDIHLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDP 221 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 221 (660)
.++.+.+..+.+.. ++ .+..+++|+.|++++|.+. .++. +..++ +|++|++++|.++.+|....
T Consensus 42 ~L~~L~l~~n~i~~--l~--~l~~l~~L~~L~L~~N~i~---------~~~~-l~~l~-~L~~L~L~~N~l~~l~~~~~- 105 (263)
T 1xeu_A 42 GVQNFNGDNSNIQS--LA--GMQFFTNLKELHLSHNQIS---------DLSP-LKDLT-KLEELSVNRNRLKNLNGIPS- 105 (263)
T ss_dssp TCSEEECTTSCCCC--CT--TGGGCTTCCEEECCSSCCC---------CCGG-GTTCS-SCCEEECCSSCCSCCTTCCC-
T ss_pred cCcEEECcCCCccc--ch--HHhhCCCCCEEECCCCccC---------CChh-hccCC-CCCEEECCCCccCCcCcccc-
Confidence 45555555544433 32 6889999999999999885 3343 77787 99999999999999886555
Q ss_pred CCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCC
Q 039656 222 ENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIP 301 (660)
Q Consensus 222 ~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp 301 (660)
.+|++|++++|+++ .+| .+..+++|+.|++++|.+..+| .+..+++|+.|+|++|.+.++
T Consensus 106 ~~L~~L~L~~N~l~-----------------~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 106 ACLSRLFLDNNELR-----------------DTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCEEECCSSCCS-----------------BSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CcccEEEccCCccC-----------------CCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 78888888777665 343 4889999999999999999887 589999999999999999998
Q ss_pred cccCCCcccCccccccccceecch
Q 039656 302 QDIGSLSSLEWFVLSGNNFEHLPA 325 (660)
Q Consensus 302 ~~l~~l~~L~~L~L~~n~l~~lp~ 325 (660)
..+..+++|+.|++++|.+...|.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred HHhccCCCCCEEeCCCCcccCCcc
Confidence 678999999999999999987763
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=2.3e-14 Score=152.51 Aligned_cols=141 Identities=22% Similarity=0.318 Sum_probs=62.5
Q ss_pred CceEEEeeCCCCCCCCCCC---CCCCceEEeCCCCCCccccC-------CCeeecCCCCCCcccCc-cccCCCCCcEEEe
Q 039656 201 ELRYLHWYGYPLRTLPSNF---DPENLIALNLPYSKVEQIWK-------GEKYLNVDGSAISHLPS-SIADLNKLEDLSF 269 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~---~l~~L~~L~L~~n~l~~l~~-------~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l 269 (660)
.+++|++++|.++.+|... .+.+|++|+|++|+|+.+++ .++.|++++|.|+.+|. .+..+++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 4566666666665555432 45556555555555543321 12222222223333322 2344444555555
Q ss_pred cCCCCcCC-CCCCCCCCCCCEEEccCCCCCCCCccc----CCCcccCccccccccceecch-hhhcCCC--CCeecccCc
Q 039656 270 FGCKASVL-PRVLSGLSSLKWMELRDCDLIKIPQDI----GSLSSLEWFVLSGNNFEHLPA-SIKKLSR--LTYLNLSGC 341 (660)
Q Consensus 270 ~~~~~~~l-p~~l~~L~~L~~L~Ls~~~l~~lp~~l----~~l~~L~~L~L~~n~l~~lp~-~i~~l~~--L~~L~L~~c 341 (660)
++|.+..+ |..+.++++|+.|+|++|.+..+|..+ ..+++|+.|+|++|+|+.+|. .+..++. |+.|+|.+|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 54444433 233444444555555554444444432 334444444444444444442 2333433 244444444
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=7.6e-14 Score=136.18 Aligned_cols=143 Identities=24% Similarity=0.352 Sum_probs=114.1
Q ss_pred CcCceEEEeeCCCCCCCCCCC--CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCc-cccCCCCCcEEEecCCCCc
Q 039656 199 PEELRYLHWYGYPLRTLPSNF--DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKAS 275 (660)
Q Consensus 199 ~~~Lr~L~l~~~~l~~lP~~~--~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~ 275 (660)
+++|++|++++|.++.+|... .+++|++|++++|+++ .+|. .+..+++|++|++++|.+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------------~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-----------------SLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-----------------CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-----------------ccChhhcCCCCCcCEEECCCCcCC
Confidence 347888999988888877653 7788888888777665 3443 4678999999999999988
Q ss_pred CCCCC-CCCCCCCCEEEccCCCCCCCCcc-cCCCcccCccccccccceecchh-hhcCCCCCeecccCccCCCCCCCCCc
Q 039656 276 VLPRV-LSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFEHLPAS-IKKLSRLTYLNLSGCNMLRSLPELPI 352 (660)
Q Consensus 276 ~lp~~-l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~~~ 352 (660)
.+|.. +.++++|++|+|++|.+..+|.. +..+++|++|++++|.++.+|.. +..+++|+.|+|++|+.....|
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~---- 165 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP---- 165 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT----
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC----
Confidence 88765 68899999999999999997764 78899999999999999988765 6889999999999997665443
Q ss_pred CCcEEecccC
Q 039656 353 RLICLDARNC 362 (660)
Q Consensus 353 ~L~~L~l~~c 362 (660)
+|+.|++..+
T Consensus 166 ~l~~L~~~~n 175 (208)
T 2o6s_A 166 GIRYLSEWIN 175 (208)
T ss_dssp TTHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4555555443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=3.2e-14 Score=137.76 Aligned_cols=146 Identities=21% Similarity=0.223 Sum_probs=122.5
Q ss_pred ccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCc
Q 039656 196 EYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKAS 275 (660)
Q Consensus 196 ~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~ 275 (660)
..++ +|+.|++++|.++.+|....+++|++|++++|.++ .+ +.+..+++|++|++++|.+.
T Consensus 41 ~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-----------------~~-~~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 41 AQMN-SLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-----------------NY-NPISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp HHHH-TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-----------------CC-GGGTTCTTCCEEEEECTTCB
T ss_pred hhcC-CccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-----------------cc-hhhhcCCCCCEEEeECCccC
Confidence 4455 89999999999999994338899999999888654 22 35888999999999999977
Q ss_pred C-CCCCCCCCCCCCEEEccCCCCCC-CCcccCCCcccCcccccccc-ceecchhhhcCCCCCeecccCccCCCCCCCC--
Q 039656 276 V-LPRVLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSGNN-FEHLPASIKKLSRLTYLNLSGCNMLRSLPEL-- 350 (660)
Q Consensus 276 ~-lp~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~-l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-- 350 (660)
. .|..+..+++|++|++++|.+.. .|..++.+++|++|++++|. ++.+| .+..+++|+.|++++|... .++.+
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~~l~~ 179 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYRGIED 179 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCTTGGG
T ss_pred cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChHHhcc
Confidence 5 67789999999999999999997 77889999999999999998 88888 7999999999999998754 45533
Q ss_pred CcCCcEEecccC
Q 039656 351 PIRLICLDARNC 362 (660)
Q Consensus 351 ~~~L~~L~l~~c 362 (660)
+++|+.|++.+.
T Consensus 180 l~~L~~L~l~~N 191 (197)
T 4ezg_A 180 FPKLNQLYAFSQ 191 (197)
T ss_dssp CSSCCEEEECBC
T ss_pred CCCCCEEEeeCc
Confidence 677788877664
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=136.40 Aligned_cols=145 Identities=18% Similarity=0.204 Sum_probs=115.5
Q ss_pred ceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCC-C
Q 039656 202 LRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPR-V 280 (660)
Q Consensus 202 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~-~ 280 (660)
-+.++++++.++.+|..+ ...+++|+|++|+++.+++ +..+..+++|++|++++|.+..+++ .
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~---------------~~~~~~l~~L~~L~L~~N~i~~i~~~~ 76 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEA---------------TGIFKKLPQLRKINFSNNKITDIEEGA 76 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECC---------------CCCGGGCTTCCEEECCSSCCCEECTTT
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCc---------------hhhhccCCCCCEEECCCCcCCEECHHH
Confidence 457888888888888765 3445677766666543311 1347899999999999999888765 7
Q ss_pred CCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccceec-chhhhcCCCCCeecccCccCCCCCCCC---CcCCc
Q 039656 281 LSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRSLPEL---PIRLI 355 (660)
Q Consensus 281 l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~ 355 (660)
+.++++|++|+|++|.+..+|. .+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|...+..|.. +++|+
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 9999999999999999999766 489999999999999999976 677899999999999999877666655 45666
Q ss_pred EEecccC
Q 039656 356 CLDARNC 362 (660)
Q Consensus 356 ~L~l~~c 362 (660)
.|++.++
T Consensus 157 ~L~L~~N 163 (220)
T 2v70_A 157 TLNLLAN 163 (220)
T ss_dssp EEECCSC
T ss_pred EEEecCc
Confidence 6666554
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=2.1e-13 Score=135.43 Aligned_cols=144 Identities=21% Similarity=0.283 Sum_probs=118.5
Q ss_pred CceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCC
Q 039656 201 ELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRV 280 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~ 280 (660)
..+.++.+++.++.+|..+ ..+|++|+|++|+++.+ .|..+..+++|++|++++|.+..+|..
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~----------------~~~~~~~l~~L~~L~L~~N~l~~i~~~ 82 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKL----------------EPGVFDSLINLKELYLGSNQLGALPVG 82 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCC----------------CTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCcc----------------CHHHhhCccCCcEEECCCCCCCCcChh
Confidence 3567888888999999765 36777777777766532 356788999999999999999988855
Q ss_pred -CCCCCCCCEEEccCCCCCCCCcc-cCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCCCCC-C---CcCC
Q 039656 281 -LSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRSLPE-L---PIRL 354 (660)
Q Consensus 281 -l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~-~---~~~L 354 (660)
+..+++|+.|+|++|.+..+|.. +..+++|++|+|++|+++.+|..+..+++|+.|+|++|+.. .+|. . +++|
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L 161 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSL 161 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCC
Confidence 68999999999999999997765 68999999999999999999999999999999999998654 5553 2 4566
Q ss_pred cEEecccC
Q 039656 355 ICLDARNC 362 (660)
Q Consensus 355 ~~L~l~~c 362 (660)
+.|++.++
T Consensus 162 ~~L~l~~N 169 (229)
T 3e6j_A 162 THAYLFGN 169 (229)
T ss_dssp CEEECTTS
T ss_pred CEEEeeCC
Confidence 77766654
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=1.8e-13 Score=135.10 Aligned_cols=143 Identities=20% Similarity=0.323 Sum_probs=115.7
Q ss_pred ceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCc-cccCCCCCcEEEecCCCCcCC-CC
Q 039656 202 LRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKASVL-PR 279 (660)
Q Consensus 202 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~l-p~ 279 (660)
-+.++++++.++.+|..+. ++|+.|++++|+|+ .+|. .+..+++|++|++++|.+..+ |.
T Consensus 13 ~~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-----------------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 74 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-----------------VIPPGAFSPYKKLRRIDLSNNQISELAPD 74 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-----------------EECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred CCEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-----------------CcCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence 3578888888888887653 56777777666654 4443 688999999999999998876 77
Q ss_pred CCCCCCCCCEEEccCCCCCCCCcc-cCCCcccCccccccccceec-chhhhcCCCCCeecccCccCCCCCCCC---CcCC
Q 039656 280 VLSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRSLPEL---PIRL 354 (660)
Q Consensus 280 ~l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~---~~~L 354 (660)
.+.++++|++|+|++|.+..+|.. +..+++|++|+|++|.++.+ |..+..+++|+.|+|++|+..+..+.. +++|
T Consensus 75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 899999999999999999998876 68899999999999999976 567899999999999998765544433 4566
Q ss_pred cEEecccC
Q 039656 355 ICLDARNC 362 (660)
Q Consensus 355 ~~L~l~~c 362 (660)
+.|++.++
T Consensus 155 ~~L~L~~N 162 (220)
T 2v9t_B 155 QTMHLAQN 162 (220)
T ss_dssp CEEECCSS
T ss_pred CEEEeCCC
Confidence 77776654
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=3.7e-14 Score=133.50 Aligned_cols=130 Identities=22% Similarity=0.200 Sum_probs=91.1
Q ss_pred cCceEEEeeCCCCC--CCCCCC-CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcC
Q 039656 200 EELRYLHWYGYPLR--TLPSNF-DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASV 276 (660)
Q Consensus 200 ~~Lr~L~l~~~~l~--~lP~~~-~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~ 276 (660)
++|+.|++++|.+. .+|..+ .+++|++|++++|.++. + ..+..+++|++|++++|.+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-----------------~-~~~~~l~~L~~L~Ls~N~l~~ 85 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----------------V-SNLPKLPKLKKLELSENRIFG 85 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-----------------C-SSCCCCSSCCEEEEESCCCCS
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-----------------h-hhhccCCCCCEEECcCCcCch
Confidence 36777777777765 666665 56666666666665542 2 346677778888888877666
Q ss_pred -CCCCCCCCCCCCEEEccCCCCCCCC--cccCCCcccCccccccccceecch----hhhcCCCCCeecccCccCCCCCC
Q 039656 277 -LPRVLSGLSSLKWMELRDCDLIKIP--QDIGSLSSLEWFVLSGNNFEHLPA----SIKKLSRLTYLNLSGCNMLRSLP 348 (660)
Q Consensus 277 -lp~~l~~L~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~i~~l~~L~~L~L~~c~~l~~lp 348 (660)
+|..+.++++|++|+|++|.+..+| ..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.. ..+|
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~ 163 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED-QEAP 163 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS-CBCC
T ss_pred HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh-hhcc
Confidence 5655556788888888888877765 577778888888888888887775 677788888888887753 3344
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1e-13 Score=147.42 Aligned_cols=145 Identities=19% Similarity=0.337 Sum_probs=115.2
Q ss_pred ceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCcccc--------CCCeeecCCCCCCcccCc-cccCCCCCcEEEecCC
Q 039656 202 LRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIW--------KGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGC 272 (660)
Q Consensus 202 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~--------~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~ 272 (660)
-+.++++++.++.+|..+ ...++.|+|++|+|+.++ +.++.|++++|.|..+|. .+.++++|++|+|++|
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 468999999999999866 356899999999998764 346788888888888764 5888888888888888
Q ss_pred CCcCCCC-CCCCCCCCCEEEccCCCCCCC-CcccCCCcccCccccccccceecchhh----hcCCCCCeecccCccCCCC
Q 039656 273 KASVLPR-VLSGLSSLKWMELRDCDLIKI-PQDIGSLSSLEWFVLSGNNFEHLPASI----KKLSRLTYLNLSGCNMLRS 346 (660)
Q Consensus 273 ~~~~lp~-~l~~L~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~i----~~l~~L~~L~L~~c~~l~~ 346 (660)
.+..+|. .+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+. ..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-CC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-Cc
Confidence 8877765 477888888888888888885 567888888888888888888888765 5688888888888754 44
Q ss_pred CC
Q 039656 347 LP 348 (660)
Q Consensus 347 lp 348 (660)
+|
T Consensus 178 l~ 179 (361)
T 2xot_A 178 LP 179 (361)
T ss_dssp CC
T ss_pred cC
Confidence 55
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=1.8e-15 Score=158.77 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=126.9
Q ss_pred cccccCC--CCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCC--CCCCC-CCCCceEEeCCCCCC
Q 039656 160 CGTFTSM--SNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRT--LPSNF-DPENLIALNLPYSKV 234 (660)
Q Consensus 160 ~~~f~~l--~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~--lP~~~-~l~~L~~L~L~~n~l 234 (660)
+..+..+ ++++.|++.+|.+.+ .+..+..++ +|++|++++|.+.. +|..+ .+++|++|++++|.+
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~---------~~~~~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l 130 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQ---------PLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 130 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECS---------CCCSCCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC
T ss_pred HHHHHhhhhccceEEEcCCccccc---------cchhhccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc
Confidence 3445555 677777777766532 222344555 77888887777642 55444 667778888777776
Q ss_pred ccc-------cCCCeeecCCCC-CCc--ccCccccCCCCCcEEEecCC-CCcC--CCCCCCCCC-CCCEEEccCC--CCC
Q 039656 235 EQI-------WKGEKYLNVDGS-AIS--HLPSSIADLNKLEDLSFFGC-KASV--LPRVLSGLS-SLKWMELRDC--DLI 298 (660)
Q Consensus 235 ~~l-------~~~l~~L~l~~~-~l~--~lp~si~~L~~L~~L~l~~~-~~~~--lp~~l~~L~-~L~~L~Ls~~--~l~ 298 (660)
... .++++.|++++| .++ .+|..+..+++|++|++++| .+.. ++..+..++ +|++|+|++| .+.
T Consensus 131 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC
Confidence 532 346677777776 566 36666777888888888888 5553 556667777 8888888888 444
Q ss_pred C--CCcccCCCcccCcccccccc-ce-ecchhhhcCCCCCeecccCccCCCCC--C--CCCcCCcEEecccC
Q 039656 299 K--IPQDIGSLSSLEWFVLSGNN-FE-HLPASIKKLSRLTYLNLSGCNMLRSL--P--ELPIRLICLDARNC 362 (660)
Q Consensus 299 ~--lp~~l~~l~~L~~L~L~~n~-l~-~lp~~i~~l~~L~~L~L~~c~~l~~l--p--~~~~~L~~L~l~~c 362 (660)
. +|..+..+++|+.|++++|. ++ ..+..+..+++|+.|+|++|.....- . ...++|+.|++.+|
T Consensus 211 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 2 66666777888888888877 54 55667777888888888887522110 0 11566777777766
No 108
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.47 E-value=2.1e-13 Score=155.06 Aligned_cols=145 Identities=24% Similarity=0.318 Sum_probs=90.3
Q ss_pred CcCceEEEeeCCCCCCCCC-CC-CCCCceEEeCCCCCCccccC-------CCeeecCCCCCCcccCc-cccCCCCCcEEE
Q 039656 199 PEELRYLHWYGYPLRTLPS-NF-DPENLIALNLPYSKVEQIWK-------GEKYLNVDGSAISHLPS-SIADLNKLEDLS 268 (660)
Q Consensus 199 ~~~Lr~L~l~~~~l~~lP~-~~-~l~~L~~L~L~~n~l~~l~~-------~l~~L~l~~~~l~~lp~-si~~L~~L~~L~ 268 (660)
|.++++|++++|.++.+|. .| ++++|++|+|++|+|+.+++ .+++|++++|+|+.+|. .+.+|++|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 4456666666666666553 34 56666666666666655432 34555555566666654 467777777777
Q ss_pred ecCCCCcCCCC-CCCCCCCCCEEEccCCCCCC--CCcccCCCcccCccccccccceecc-hhhhcCCCCC----eecccC
Q 039656 269 FFGCKASVLPR-VLSGLSSLKWMELRDCDLIK--IPQDIGSLSSLEWFVLSGNNFEHLP-ASIKKLSRLT----YLNLSG 340 (660)
Q Consensus 269 l~~~~~~~lp~-~l~~L~~L~~L~Ls~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~----~L~L~~ 340 (660)
+++|.+..+|+ .++++++|++|+|++|.+.. +|..++.+++|++|++++|+++.++ ..+..+.+++ .++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 77777776664 36777777777777777765 4666777777777777777777543 3444444433 455555
Q ss_pred ccC
Q 039656 341 CNM 343 (660)
Q Consensus 341 c~~ 343 (660)
|..
T Consensus 211 n~l 213 (635)
T 4g8a_A 211 NPM 213 (635)
T ss_dssp CCC
T ss_pred Ccc
Confidence 443
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=2.1e-14 Score=166.58 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=103.0
Q ss_pred CceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCC
Q 039656 201 ELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPR 279 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~ 279 (660)
.|+.|++++|.+..+|..+ .+.+| +.|++++|.|+.+|.+|++|++|++|+|++|.+..+|.
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~~l~~L-----------------~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~ 287 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIFKYDFL-----------------TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGGGCCSC-----------------SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCS
T ss_pred CCcEEECCCCCCCCCChhhcCCCCC-----------------CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccCh
Confidence 5555555555555555433 44444 55555666667789999999999999999999999999
Q ss_pred CCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccce-ecchhhhcCC-CCCeecccCccCCCCCCCCCcCCcEE
Q 039656 280 VLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFE-HLPASIKKLS-RLTYLNLSGCNMLRSLPELPIRLICL 357 (660)
Q Consensus 280 ~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~~~~L~~L 357 (660)
.+++|++|++|+|++|.+..+|..|+.+++|+.|+|++|.|+ .+|..+..+. .+..|+|++|...+.+|. .|+.|
T Consensus 288 ~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~l 364 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRFI 364 (727)
T ss_dssp SGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C----
T ss_pred hhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---cccee
Confidence 999999999999999999999999999999999999999999 5666665442 223477888888777665 55666
Q ss_pred ecccC
Q 039656 358 DARNC 362 (660)
Q Consensus 358 ~l~~c 362 (660)
++..+
T Consensus 365 ~l~~n 369 (727)
T 4b8c_D 365 EINTD 369 (727)
T ss_dssp -----
T ss_pred Eeecc
Confidence 66554
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=5.2e-15 Score=158.75 Aligned_cols=182 Identities=18% Similarity=0.150 Sum_probs=148.7
Q ss_pred cccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCC-----CCCC-CC---------CCceE
Q 039656 162 TFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTL-----PSNF-DP---------ENLIA 226 (660)
Q Consensus 162 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~l-----P~~~-~l---------~~L~~ 226 (660)
+|.++++|++|++++|.+.+ .....+|..+..++ +|++|++++|.++.. +..+ .+ ++|++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~----~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGP----TAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCT----TTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred HHhhCCcccEEECCCCcCCH----HHHHHHHHHHHhCC-CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcE
Confidence 45789999999999998852 11124667777787 999999999998532 2222 23 89999
Q ss_pred EeCCCCCCc--cc---------cCCCeeecCCCCCCc------ccCccccCCCCCcEEEecCCCC-----cCCCCCCCCC
Q 039656 227 LNLPYSKVE--QI---------WKGEKYLNVDGSAIS------HLPSSIADLNKLEDLSFFGCKA-----SVLPRVLSGL 284 (660)
Q Consensus 227 L~L~~n~l~--~l---------~~~l~~L~l~~~~l~------~lp~si~~L~~L~~L~l~~~~~-----~~lp~~l~~L 284 (660)
|++++|++. .+ .+.++.|++++|.+. -+|..+..+++|++|+|++|.+ ..+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 999999996 22 358899999999998 3454789999999999999998 5678888999
Q ss_pred CCCCEEEccCCCCCC-----CCccc--CCCcccCcccccccccee-----cchhh-hcCCCCCeecccCccCCCCCC
Q 039656 285 SSLKWMELRDCDLIK-----IPQDI--GSLSSLEWFVLSGNNFEH-----LPASI-KKLSRLTYLNLSGCNMLRSLP 348 (660)
Q Consensus 285 ~~L~~L~Ls~~~l~~-----lp~~l--~~l~~L~~L~L~~n~l~~-----lp~~i-~~l~~L~~L~L~~c~~l~~lp 348 (660)
++|++|+|++|.+.. +|..+ +.+++|++|+|++|.++. +|..+ .++++|++|+|++|+.....|
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999999999986 46666 459999999999999997 89888 679999999999998776553
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.2e-13 Score=130.03 Aligned_cols=137 Identities=19% Similarity=0.223 Sum_probs=115.1
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccCCCee
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWKGEKY 243 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~~l~~ 243 (660)
..++|+.|++++|.+. ...+|..+..++ +|++|++++|.++.+ ..+ .+++|++|++++|.++.
T Consensus 22 ~~~~L~~L~l~~n~l~-------~~~i~~~~~~l~-~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~------- 85 (168)
T 2ell_A 22 TPAAVRELVLDNCKSN-------DGKIEGLTAEFV-NLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFG------- 85 (168)
T ss_dssp CTTSCSEEECCSCBCB-------TTBCSSCCGGGG-GCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCS-------
T ss_pred CcccCCEEECCCCCCC-------hhhHHHHHHhCC-CCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCch-------
Confidence 3578999999998873 126777778887 999999999999888 445 88999999998887753
Q ss_pred ecCCCCCCcccCccccCCCCCcEEEecCCCCcCCC--CCCCCCCCCCEEEccCCCCCCCCc----ccCCCcccCcccccc
Q 039656 244 LNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLP--RVLSGLSSLKWMELRDCDLIKIPQ----DIGSLSSLEWFVLSG 317 (660)
Q Consensus 244 L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp--~~l~~L~~L~~L~Ls~~~l~~lp~----~l~~l~~L~~L~L~~ 317 (660)
.+|..+..+++|++|++++|.+..+| ..+..+++|++|++++|.+..+|. .+..+++|++|++++
T Consensus 86 ---------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 86 ---------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ---------CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ---------HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 15666677999999999999988876 678999999999999999999887 788999999999999
Q ss_pred ccceecchh
Q 039656 318 NNFEHLPAS 326 (660)
Q Consensus 318 n~l~~lp~~ 326 (660)
|.+.++|..
T Consensus 157 n~~~~~~~~ 165 (168)
T 2ell_A 157 REDQEAPDS 165 (168)
T ss_dssp TTSCBCCSS
T ss_pred CChhhcccc
Confidence 999888854
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=4.4e-15 Score=155.85 Aligned_cols=196 Identities=19% Similarity=0.202 Sum_probs=147.2
Q ss_pred ccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCC-CCCCCC-CCCCceEEeCCCC-CCcc--c
Q 039656 163 FTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLR-TLPSNF-DPENLIALNLPYS-KVEQ--I 237 (660)
Q Consensus 163 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~-~lP~~~-~l~~L~~L~L~~n-~l~~--l 237 (660)
+.++++|+.|++++|.+. ...++..+..++ +|++|++++|.+. ..|..+ .+++|++|++++| .++. +
T Consensus 89 ~~~~~~L~~L~L~~~~l~-------~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIE-------VSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp CCCCBCCCEEECTTCEEC-------HHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHH
T ss_pred hccCCCCCEEEccCCCcC-------HHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHH
Confidence 557899999999988763 123666677777 9999999999875 445445 7899999999999 6764 2
Q ss_pred ------cCCCeeecCCCC-CCcc--cCccccCCC-CCcEEEecCCCC----cCCCCCCCCCCCCCEEEccCCC-CCC-CC
Q 039656 238 ------WKGEKYLNVDGS-AISH--LPSSIADLN-KLEDLSFFGCKA----SVLPRVLSGLSSLKWMELRDCD-LIK-IP 301 (660)
Q Consensus 238 ------~~~l~~L~l~~~-~l~~--lp~si~~L~-~L~~L~l~~~~~----~~lp~~l~~L~~L~~L~Ls~~~-l~~-lp 301 (660)
.+.++.|++++| .++. +|..+..++ +|++|++++|.. ..+|..+.++++|+.|++++|. ++. .+
T Consensus 161 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence 468899999999 8884 677889999 999999999953 4567777889999999999999 554 67
Q ss_pred cccCCCcccCcccccccc-ce-ecchhhhcCCCCCeecccCccCCCCCCCCCcCCcEEecccCcCCcc
Q 039656 302 QDIGSLSSLEWFVLSGNN-FE-HLPASIKKLSRLTYLNLSGCNMLRSLPELPIRLICLDARNCERLRT 367 (660)
Q Consensus 302 ~~l~~l~~L~~L~L~~n~-l~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~~~~L~~L~l~~c~~L~~ 367 (660)
..+..+++|++|++++|. +. .....+..+++|+.|+|++|-....+..+..+++.|++. |..++.
T Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~-~n~l~~ 307 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQIN-CSHFTT 307 (336)
T ss_dssp GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEES-CCCSCC
T ss_pred HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEe-cccCcc
Confidence 788999999999999885 33 212357889999999999981111111122446666663 444443
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.3e-13 Score=130.90 Aligned_cols=125 Identities=18% Similarity=0.256 Sum_probs=91.4
Q ss_pred CceEEEeeCCCCCCCCCCCCCC-CceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCC
Q 039656 201 ELRYLHWYGYPLRTLPSNFDPE-NLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPR 279 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~~l~-~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~ 279 (660)
+|+.|++++|.++.+|....+. +|++|++++|.++. + ..++.+++|++|++++|.+..+|+
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-----------------~-~~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-----------------L-DGFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-----------------E-CCCCCCSSCCEEECCSSCCCEECS
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-----------------c-cccccCCCCCEEECCCCcccccCc
Confidence 6777777777776665433333 66666666666543 3 346677888888888888777776
Q ss_pred CC-CCCCCCCEEEccCCCCCCCCc--ccCCCcccCccccccccceecchh----hhcCCCCCeecccCccC
Q 039656 280 VL-SGLSSLKWMELRDCDLIKIPQ--DIGSLSSLEWFVLSGNNFEHLPAS----IKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 280 ~l-~~L~~L~~L~Ls~~~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp~~----i~~l~~L~~L~L~~c~~ 343 (660)
.+ ..+++|++|+|++|.+..+|. .++.+++|+.|++++|.+..+|.. +..+++|+.|++++|..
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55 778888888888888877776 777888888888888888877764 77888888888877653
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=9.2e-14 Score=127.97 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=92.5
Q ss_pred cCceEEEeeCCCCC--CCCCCC-CCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcC
Q 039656 200 EELRYLHWYGYPLR--TLPSNF-DPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASV 276 (660)
Q Consensus 200 ~~Lr~L~l~~~~l~--~lP~~~-~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~ 276 (660)
++|+.|++++|.+. .+|..+ .+++|++|++++|.++. + ..++.+++|++|++++|.+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~-~~~~~l~~L~~L~Ls~n~i~~ 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----------------I-ANLPKLNKLKKLELSDNRVSG 78 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-----------------C-TTCCCCTTCCEEECCSSCCCS
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-----------------c-hhhhcCCCCCEEECCCCcccc
Confidence 37788888888776 677765 67777777777776643 2 346777888888888888776
Q ss_pred -CCCCCCCCCCCCEEEccCCCCCCCC--cccCCCcccCccccccccceecch----hhhcCCCCCeecccC
Q 039656 277 -LPRVLSGLSSLKWMELRDCDLIKIP--QDIGSLSSLEWFVLSGNNFEHLPA----SIKKLSRLTYLNLSG 340 (660)
Q Consensus 277 -lp~~l~~L~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~i~~l~~L~~L~L~~ 340 (660)
+|..+..+++|++|++++|.+.++| ..++.+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 79 ~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 6666666888888888888888754 678888888888888888887765 577888888888753
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=1.4e-14 Score=154.05 Aligned_cols=195 Identities=17% Similarity=0.139 Sum_probs=106.4
Q ss_pred cCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCC-CCC-CC-----CCceEEeCCCCCCcc
Q 039656 164 TSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLP-SNF-DP-----ENLIALNLPYSKVEQ 236 (660)
Q Consensus 164 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP-~~~-~l-----~~L~~L~L~~n~l~~ 236 (660)
...++|+.|++++|.+++. ....+...+..++.+|++|++++|.++... ..+ .+ ++|++|+|++|.++.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSI----STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp TSCTTCCEEECTTSCGGGS----CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred hCCCCceEEEccCCCCChH----HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 3344466666666665310 000111334444445666666666665432 222 21 666666666666654
Q ss_pred cc------------CCCeeecCCCCCCcccCc-c----ccC-CCCCcEEEecCCCCc-----CCCCCCCCCC-CCCEEEc
Q 039656 237 IW------------KGEKYLNVDGSAISHLPS-S----IAD-LNKLEDLSFFGCKAS-----VLPRVLSGLS-SLKWMEL 292 (660)
Q Consensus 237 l~------------~~l~~L~l~~~~l~~lp~-s----i~~-L~~L~~L~l~~~~~~-----~lp~~l~~L~-~L~~L~L 292 (660)
.. +.++.|++++|.++..+. . +.. .++|++|++++|.+. .++..+..++ +|++|+|
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 21 466666666666665543 1 233 246777777777655 2333344444 6777777
Q ss_pred cCCCCCCCCc-----ccCCC-cccCcccccccccee-----cchhhhcC-CCCCeecccCccCCCCCC-------CCCcC
Q 039656 293 RDCDLIKIPQ-----DIGSL-SSLEWFVLSGNNFEH-----LPASIKKL-SRLTYLNLSGCNMLRSLP-------ELPIR 353 (660)
Q Consensus 293 s~~~l~~lp~-----~l~~l-~~L~~L~L~~n~l~~-----lp~~i~~l-~~L~~L~L~~c~~l~~lp-------~~~~~ 353 (660)
++|.+...+. .+..+ ++|++|+|++|.+.. ++..+..+ ++|+.|+|++|.....-+ ...++
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 7777665332 23334 467777777777665 55555553 477777777765433211 22455
Q ss_pred CcEEecccC
Q 039656 354 LICLDARNC 362 (660)
Q Consensus 354 L~~L~l~~c 362 (660)
|+.|++.+|
T Consensus 255 L~~L~L~~n 263 (362)
T 3goz_A 255 LQTVYLDYD 263 (362)
T ss_dssp CSEEEEEHH
T ss_pred ccEEEeccC
Confidence 666666665
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=6.1e-14 Score=162.62 Aligned_cols=159 Identities=20% Similarity=0.280 Sum_probs=103.6
Q ss_pred CCCccEEEEecCCCCCcccCCcceecCCccccCCcCceE-----EEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccC
Q 039656 166 MSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRY-----LHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWK 239 (660)
Q Consensus 166 l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~-----L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~ 239 (660)
.++++.|.|++|.+. ..+..+.... .|+. +++..|.+...|..+ .+.+|+.|+|++|.
T Consensus 172 ~~~~~~l~L~~n~~~---------~~~~~~l~~l-~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~------ 235 (727)
T 4b8c_D 172 TPLTPKIELFANGKD---------EANQALLQHK-KLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ------ 235 (727)
T ss_dssp ------------------------------------------------------------CCCCCCEEECTTSC------
T ss_pred CCccceEEeeCCCCC---------cchhhHhhcC-ccCcccccCccccccceecChhhhccCCCCcEEECCCCC------
Confidence 356788888777653 2232222222 2222 233333344344444 66667666666555
Q ss_pred CCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCcccccccc
Q 039656 240 GEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNN 319 (660)
Q Consensus 240 ~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~ 319 (660)
+..+|..+..+++|++|+|++|.+..+|..+++|++|++|+|++|.+..+|..++.|++|++|+|++|.
T Consensus 236 -----------l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 236 -----------IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp -----------CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC
T ss_pred -----------CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC
Confidence 456788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecchhhhcCCCCCeecccCccCCCCCCCCC
Q 039656 320 FEHLPASIKKLSRLTYLNLSGCNMLRSLPELP 351 (660)
Q Consensus 320 l~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~~ 351 (660)
|+.+|..++.|++|+.|+|++|+..+.+|..+
T Consensus 305 l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 305 VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 99999999999999999999999888777654
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=6.1e-15 Score=156.90 Aligned_cols=215 Identities=16% Similarity=0.144 Sum_probs=151.4
Q ss_pred EEEEEeecCCCeeeecCc----ccccCCC-CccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCC
Q 039656 143 IEGIFLDMSKIRDIHLAC----GTFTSMS-NLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPS 217 (660)
Q Consensus 143 v~~i~l~~s~~~~~~l~~----~~f~~l~-~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~ 217 (660)
++.+.+..+.+ ..... .+|.+++ +|+.|++++|.+++. ....+...+...+++|++|++++|.++..+.
T Consensus 24 L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 24 VTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFK----NSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS----CHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHH----HHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 55554444433 23333 6788898 999999999987521 0111222223332489999999999976553
Q ss_pred C-----C-CC-CCceEEeCCCCCCccc------------cCCCeeecCCCCCCc-----ccCccccCCC-CCcEEEecCC
Q 039656 218 N-----F-DP-ENLIALNLPYSKVEQI------------WKGEKYLNVDGSAIS-----HLPSSIADLN-KLEDLSFFGC 272 (660)
Q Consensus 218 ~-----~-~l-~~L~~L~L~~n~l~~l------------~~~l~~L~l~~~~l~-----~lp~si~~L~-~L~~L~l~~~ 272 (660)
. + .+ ++|++|++++|.++.. +..++.|++++|.++ .++..+..++ +|++|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 3 2 34 8999999999998764 258999999999998 4556666776 9999999999
Q ss_pred CCcCCCC-----CCCCC-CCCCEEEccCCCCCC-----CCcccCCC-cccCccccccccceecc-----hhhhcCCCCCe
Q 039656 273 KASVLPR-----VLSGL-SSLKWMELRDCDLIK-----IPQDIGSL-SSLEWFVLSGNNFEHLP-----ASIKKLSRLTY 335 (660)
Q Consensus 273 ~~~~lp~-----~l~~L-~~L~~L~Ls~~~l~~-----lp~~l~~l-~~L~~L~L~~n~l~~lp-----~~i~~l~~L~~ 335 (660)
.+...+. .+..+ ++|++|+|++|.+.. ++..+..+ ++|++|+|++|.++..+ ..+..+++|+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 9875542 34455 599999999999987 66666664 59999999999998654 33477899999
Q ss_pred ecccCccCCC-------CCCCC---CcCCcEEecccCc
Q 039656 336 LNLSGCNMLR-------SLPEL---PIRLICLDARNCE 363 (660)
Q Consensus 336 L~L~~c~~l~-------~lp~~---~~~L~~L~l~~c~ 363 (660)
|+|++|.... .++.. .++|+.|++.++.
T Consensus 258 L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 9999987221 12222 3456666666553
No 118
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.42 E-value=9.4e-15 Score=164.19 Aligned_cols=113 Identities=9% Similarity=0.032 Sum_probs=92.2
Q ss_pred CeeeecccccCCHHHHHHHHH-HHhcCCCchhhhhhhccccccchhhhceee-----------eeecCCCCCCHHHHHHH
Q 039656 1 KLEALGQFLTKSKLDWKNALK-NLTRISNPNIYDVLKISYNELKKEEKSIFL-----------DIACFFKGEDKDYMTMI 68 (660)
Q Consensus 1 AlkvlG~~L~~k~~eW~~~l~-~l~~~~~~~I~~~LklSYd~Lp~~lK~cFL-----------y~a~Fp~~~~~~~l~~i 68 (660)
||+++|+.|+.+.-+|...+. .++..+..+|.++|++||++||.++|.||+ |||+||+|+.++ +.+
T Consensus 332 Al~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~ 409 (549)
T 2a5y_B 332 TLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKL 409 (549)
T ss_dssp HHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHH
T ss_pred HHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eee
Confidence 788999999888223334444 455546778999999999999999999999 999999999988 889
Q ss_pred hcCC--CC-cc-----------ccchhhhcCCCEEEecC---CeEeecHHHHHHHHHHHhhhcc
Q 039656 69 QDYP--DY-AD-----------YGVNFLVDKSLITISCY---NKLQMHDLLQEMGQEIVRQESV 115 (660)
Q Consensus 69 w~a~--gf-~~-----------~~i~~Li~rsLi~~~~~---~~~~MHDLl~d~~~~i~~~e~~ 115 (660)
|+|+ || .. .++++|++||||+.... ++|+|||++||+|++++.+++.
T Consensus 410 w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 410 WSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 9999 77 11 26999999999998653 4699999999999999887753
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=7.8e-13 Score=127.65 Aligned_cols=123 Identities=22% Similarity=0.354 Sum_probs=96.0
Q ss_pred eEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCC-CC
Q 039656 203 RYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPR-VL 281 (660)
Q Consensus 203 r~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~-~l 281 (660)
++++++++.++.+|..+ ..+|++|++++|+ ++.+|..+.++++|++|++++|.+..++. .+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~-----------------i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f 74 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQ-----------------FTLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSC-----------------CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCc-----------------CchhHHHhhcccCCCEEECCCCcCCEeCHhHc
Confidence 56777888888887654 2455555555544 45677778888899999999998887764 58
Q ss_pred CCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccceecchh-hhcCCCCCeecccCccC
Q 039656 282 SGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPAS-IKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 282 ~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 343 (660)
.++++|++|+|++|.+..+|+ .+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 888999999999999888654 688889999999999999888764 67888888888888764
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=3e-13 Score=124.52 Aligned_cols=119 Identities=28% Similarity=0.341 Sum_probs=99.3
Q ss_pred CCeeecCCCCCCc--ccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCC-CCcccCCCcccCccccc
Q 039656 240 GEKYLNVDGSAIS--HLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLS 316 (660)
Q Consensus 240 ~l~~L~l~~~~l~--~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~ 316 (660)
.++.|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+ +|..++.+++|++|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 3455555555566 7888889999999999999998888 679999999999999999999 88778889999999999
Q ss_pred cccceecc--hhhhcCCCCCeecccCccCCCCCCC----C---CcCCcEEecc
Q 039656 317 GNNFEHLP--ASIKKLSRLTYLNLSGCNMLRSLPE----L---PIRLICLDAR 360 (660)
Q Consensus 317 ~n~l~~lp--~~i~~l~~L~~L~L~~c~~l~~lp~----~---~~~L~~L~l~ 360 (660)
+|.++.+| ..+..+++|++|++++|+.. .+|. . +++|+.|+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 99999875 78999999999999998754 4444 2 5677777665
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=1.1e-12 Score=126.37 Aligned_cols=127 Identities=20% Similarity=0.266 Sum_probs=102.5
Q ss_pred ceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCc--cccCCCCCcEEEecCCCCcCC-C
Q 039656 202 LRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPS--SIADLNKLEDLSFFGCKASVL-P 278 (660)
Q Consensus 202 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~--si~~L~~L~~L~l~~~~~~~l-p 278 (660)
-++|+++++.++.+|..+. .+|++|++++|+++ .+|. .++.+++|++|++++|.+..+ |
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~-----------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 71 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELG-----------------RISSDGLFGRLPHLVKLELKRNQLTGIEP 71 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCC-----------------SBCCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCC-----------------ccCCccccccCCCCCEEECCCCCCCCcCH
Confidence 4688999999998887662 37777777766654 4443 378899999999999998876 6
Q ss_pred CCCCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccceec-chhhhcCCCCCeecccCccCCCC
Q 039656 279 RVLSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHL-PASIKKLSRLTYLNLSGCNMLRS 346 (660)
Q Consensus 279 ~~l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~l~~ 346 (660)
..+.++++|++|+|++|.+..++. .+..+++|++|+|++|+++.+ |..+..+++|+.|+|++|+....
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 778899999999999999998554 588899999999999999955 67788899999999999876543
No 122
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.36 E-value=4.1e-14 Score=155.09 Aligned_cols=190 Identities=21% Similarity=0.209 Sum_probs=108.2
Q ss_pred CccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCC-----CCCC--CCCCceEEeCCCCCCccc---
Q 039656 168 NLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTL-----PSNF--DPENLIALNLPYSKVEQI--- 237 (660)
Q Consensus 168 ~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~l-----P~~~--~l~~L~~L~L~~n~l~~l--- 237 (660)
+|+.|++++|.++. .....++..+..++ +|++|++++|.++.. ...+ ...+|++|++++|.++..
T Consensus 86 ~L~~L~L~~n~i~~----~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 86 KIQKLSLQNCCLTG----AGCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CCCEEECTTSCCBG----GGHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred ceeEEEccCCCCCH----HHHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 46666666665531 00123455555555 666666666665321 1111 234566666666666542
Q ss_pred --------cCCCeeecCCCCCCccc-Ccccc-----CCCCCcEEEecCCCCcC-----CCCCCCCCCCCCEEEccCCCCC
Q 039656 238 --------WKGEKYLNVDGSAISHL-PSSIA-----DLNKLEDLSFFGCKASV-----LPRVLSGLSSLKWMELRDCDLI 298 (660)
Q Consensus 238 --------~~~l~~L~l~~~~l~~l-p~si~-----~L~~L~~L~l~~~~~~~-----lp~~l~~L~~L~~L~Ls~~~l~ 298 (660)
.+.++.|++++|.+... +..+. .+++|++|++++|.+.. ++..+..+++|++|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 14566666666666532 11121 24567777777776554 3555556677777777777665
Q ss_pred CC------CcccCCCcccCcccccccccee-----cchhhhcCCCCCeecccCccCCCC----C----CCCCcCCcEEec
Q 039656 299 KI------PQDIGSLSSLEWFVLSGNNFEH-----LPASIKKLSRLTYLNLSGCNMLRS----L----PELPIRLICLDA 359 (660)
Q Consensus 299 ~l------p~~l~~l~~L~~L~L~~n~l~~-----lp~~i~~l~~L~~L~L~~c~~l~~----l----p~~~~~L~~L~l 359 (660)
.. +..+..+++|++|++++|.++. ++..+..+++|++|+|++|..... + ....++|+.|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 41 2223356777777777777774 666677777788888877754321 1 112357777777
Q ss_pred ccC
Q 039656 360 RNC 362 (660)
Q Consensus 360 ~~c 362 (660)
.+|
T Consensus 321 ~~n 323 (461)
T 1z7x_W 321 KSC 323 (461)
T ss_dssp TTS
T ss_pred CCC
Confidence 766
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.35 E-value=3.8e-12 Score=120.75 Aligned_cols=126 Identities=21% Similarity=0.327 Sum_probs=86.4
Q ss_pred ceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCc-cccCCCCCcEEEecCCCCcCCCCC
Q 039656 202 LRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKASVLPRV 280 (660)
Q Consensus 202 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~lp~~ 280 (660)
.+.++++++.++.+|..+ .++|++|++++|+++ .+|. .++.+++|++|++++|.+..+|..
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-----------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-----------------SLPHGVFDKLTQLTKLSLSQNQIQSLPDG 70 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-----------------CCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-----------------EeCHHHhcCcccccEEECCCCcceEeChh
Confidence 456677777777777543 356666666655544 3333 356777788888888777776654
Q ss_pred -CCCCCCCCEEEccCCCCCCCCcc-cCCCcccCccccccccceecchh-hhcCCCCCeecccCccCCC
Q 039656 281 -LSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFEHLPAS-IKKLSRLTYLNLSGCNMLR 345 (660)
Q Consensus 281 -l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~l~ 345 (660)
+..+++|+.|+|++|.+..+|.. ++.+++|++|++++|.++.+|.. +..+++|+.|+|++|+...
T Consensus 71 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 46777888888888887776553 57777888888888888777765 3667788888887776544
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=1.1e-12 Score=124.58 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=112.6
Q ss_pred ccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCC
Q 039656 161 GTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKG 240 (660)
Q Consensus 161 ~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~ 240 (660)
..|.++.+|+.|++++|.+. .+| .+..+.++|++|++++|.++.++.-..+++|++|++++|.++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~---------~i~-~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~----- 77 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP---------VIE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC----- 77 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC---------SCC-CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC-----
T ss_pred HhcCCcCCceEEEeeCCCCc---------hhH-HhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccc-----
Confidence 45778999999999999874 333 345554589999999999988843237888888888877765
Q ss_pred CeeecCCCCCCcccCccc-cCCCCCcEEEecCCCCcCCCC--CCCCCCCCCEEEccCCCCCCCCcc----cCCCcccCcc
Q 039656 241 EKYLNVDGSAISHLPSSI-ADLNKLEDLSFFGCKASVLPR--VLSGLSSLKWMELRDCDLIKIPQD----IGSLSSLEWF 313 (660)
Q Consensus 241 l~~L~l~~~~l~~lp~si-~~L~~L~~L~l~~~~~~~lp~--~l~~L~~L~~L~Ls~~~l~~lp~~----l~~l~~L~~L 313 (660)
.+|..+ ..+++|++|++++|.+..+|. .+..+++|+.|++++|.+..+|.. ++.+++|+.|
T Consensus 78 ------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 78 ------------RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp ------------EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred ------------ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcccee
Confidence 445444 789999999999999998887 788999999999999999998885 8899999999
Q ss_pred ccccccceecc
Q 039656 314 VLSGNNFEHLP 324 (660)
Q Consensus 314 ~L~~n~l~~lp 324 (660)
+++.|...+..
T Consensus 146 d~~~n~~~~~~ 156 (176)
T 1a9n_A 146 DFQKVKLKERQ 156 (176)
T ss_dssp TTEECCHHHHH
T ss_pred CCCcCCHHHHH
Confidence 99999877544
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=6.5e-12 Score=121.18 Aligned_cols=124 Identities=19% Similarity=0.374 Sum_probs=103.5
Q ss_pred cEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccCCCeeecCCC
Q 039656 170 RLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWKGEKYLNVDG 248 (660)
Q Consensus 170 r~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~~l~~L~l~~ 248 (660)
++++++++.+. .+|..+ +.+|++|++++|.++.+|..+ .+++|++|+|++|.|+.+
T Consensus 13 ~~l~~~~~~l~---------~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i----------- 69 (193)
T 2wfh_A 13 TVVRCSNKGLK---------VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL----------- 69 (193)
T ss_dssp TEEECTTSCCS---------SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-----------
T ss_pred CEEEcCCCCCC---------cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-----------
Confidence 46677666653 566543 358999999999999999777 889999999988877643
Q ss_pred CCCcccCccccCCCCCcEEEecCCCCcCCCC-CCCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccce
Q 039656 249 SAISHLPSSIADLNKLEDLSFFGCKASVLPR-VLSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFE 321 (660)
Q Consensus 249 ~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~-~l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~ 321 (660)
.|..+..+++|++|++++|.+..+|+ .+.++++|+.|+|++|.+..+|. .+..+++|+.|+|++|.+.
T Consensus 70 -----~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 70 -----SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -----CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 23468899999999999999888765 68899999999999999999877 4889999999999999887
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=4e-12 Score=122.46 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=101.0
Q ss_pred eeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCC--CCCCCCCCEEEccCCCCCCC-CcccCCCcccCccccccc
Q 039656 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRV--LSGLSSLKWMELRDCDLIKI-PQDIGSLSSLEWFVLSGN 318 (660)
Q Consensus 242 ~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~--l~~L~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n 318 (660)
+.++++++.++++|..+.. +|++|++++|.+..++.. +..+++|++|+|++|.+.++ |..++.+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4566777777888886654 999999999999988864 88999999999999999995 778999999999999999
Q ss_pred cceecchh-hhcCCCCCeecccCccCCCCCCCC---CcCCcEEecccC
Q 039656 319 NFEHLPAS-IKKLSRLTYLNLSGCNMLRSLPEL---PIRLICLDARNC 362 (660)
Q Consensus 319 ~l~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c 362 (660)
+++.++.. +..+++|++|+|++|+..+..|.. +++|+.|++.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 99977654 889999999999999887777765 456777776654
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=2.2e-12 Score=145.14 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=95.2
Q ss_pred CceEEeCCCCCCcccc-----CCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCC
Q 039656 223 NLIALNLPYSKVEQIW-----KGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDL 297 (660)
Q Consensus 223 ~L~~L~L~~n~l~~l~-----~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l 297 (660)
.|+.|+|++|.|+.++ +.++.|++++|.++.+|..++++++|++|+|++|.+..+| .++++++|+.|+|++|.+
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 3555666665555543 2445666666777789999999999999999999999998 799999999999999999
Q ss_pred CCC--CcccCCCcccCccccccccceecchhh----hcCCCCCeecc
Q 039656 298 IKI--PQDIGSLSSLEWFVLSGNNFEHLPASI----KKLSRLTYLNL 338 (660)
Q Consensus 298 ~~l--p~~l~~l~~L~~L~L~~n~l~~lp~~i----~~l~~L~~L~L 338 (660)
.++ |..++.+++|+.|+|++|.++.+|..+ ..+++|+.|++
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 997 899999999999999999999877543 45899999864
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.32 E-value=6.9e-14 Score=153.28 Aligned_cols=217 Identities=17% Similarity=0.177 Sum_probs=140.6
Q ss_pred cEEEEEeecCCCeee--ecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCC-----
Q 039656 142 AIEGIFLDMSKIRDI--HLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRT----- 214 (660)
Q Consensus 142 ~v~~i~l~~s~~~~~--~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~----- 214 (660)
.++.+.+..+.+... ..-+.+|.++++|+.|++++|.+.+. ....+...+.....+|++|++++|.++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~----~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA----GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH----HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH----HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 355555544444321 12256788889999999988876310 0011222222212268889998888754
Q ss_pred CCCCC-CCCCceEEeCCCCCCccc------------cCCCeeecCCCCCCcc-----cCccccCCCCCcEEEecCCCCcC
Q 039656 215 LPSNF-DPENLIALNLPYSKVEQI------------WKGEKYLNVDGSAISH-----LPSSIADLNKLEDLSFFGCKASV 276 (660)
Q Consensus 215 lP~~~-~l~~L~~L~L~~n~l~~l------------~~~l~~L~l~~~~l~~-----lp~si~~L~~L~~L~l~~~~~~~ 276 (660)
++..+ .+++|++|++++|.+... .+.++.|++++|.++. ++..+..+++|++|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 33333 567888888888887542 2378888888888875 57777788888888888887654
Q ss_pred C------CCCCCCCCCCCEEEccCCCCCC-----CCcccCCCcccCccccccccceec-chhhh-----cCCCCCeeccc
Q 039656 277 L------PRVLSGLSSLKWMELRDCDLIK-----IPQDIGSLSSLEWFVLSGNNFEHL-PASIK-----KLSRLTYLNLS 339 (660)
Q Consensus 277 l------p~~l~~L~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~-----~l~~L~~L~L~ 339 (660)
. +.....+++|++|++++|.+.. ++..+..+++|++|++++|.+... +..+. ..++|+.|+|+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 2 2223357888888888888876 677777788888888888887622 22222 23688888888
Q ss_pred CccCCCC----CCCC---CcCCcEEecccC
Q 039656 340 GCNMLRS----LPEL---PIRLICLDARNC 362 (660)
Q Consensus 340 ~c~~l~~----lp~~---~~~L~~L~l~~c 362 (660)
+|..... +|.. .++|+.|++++|
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 8875433 2222 356777777665
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=4.6e-11 Score=113.17 Aligned_cols=127 Identities=23% Similarity=0.310 Sum_probs=100.7
Q ss_pred ccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC--CCCCceEEeCCCCCCccccCCCeeecC
Q 039656 169 LRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF--DPENLIALNLPYSKVEQIWKGEKYLNV 246 (660)
Q Consensus 169 Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~--~l~~L~~L~L~~n~l~~l~~~l~~L~l 246 (660)
.+.+++.++.+. .+|..+ +++|+.|++++|.++.+|... .+++|++|++++|+++.
T Consensus 9 ~~~l~~~~~~l~---------~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------- 66 (177)
T 2o6r_A 9 GTEIRCNSKGLT---------SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS---------- 66 (177)
T ss_dssp TTEEECCSSCCS---------SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----------
T ss_pred CCEEEecCCCCc---------cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE----------
Confidence 356666666553 455433 348999999999998888653 78899999888877653
Q ss_pred CCCCCcccCc-cccCCCCCcEEEecCCCCcCCCCC-CCCCCCCCEEEccCCCCCCCCcc-cCCCcccCccccccccceec
Q 039656 247 DGSAISHLPS-SIADLNKLEDLSFFGCKASVLPRV-LSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFEHL 323 (660)
Q Consensus 247 ~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~lp~~-l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~l 323 (660)
+|. .+..+++|++|++++|.+..+|.. +..+++|++|+|++|.+..+|.. +..+++|++|++++|.+...
T Consensus 67 -------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 67 -------LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp -------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -------eChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 443 468899999999999998888765 68899999999999999998876 57899999999999998854
Q ss_pred c
Q 039656 324 P 324 (660)
Q Consensus 324 p 324 (660)
+
T Consensus 140 ~ 140 (177)
T 2o6r_A 140 C 140 (177)
T ss_dssp H
T ss_pred C
Confidence 4
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=3.8e-11 Score=113.70 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=78.0
Q ss_pred ceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCC-
Q 039656 202 LRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRV- 280 (660)
Q Consensus 202 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~- 280 (660)
-+.++++++.++.+|..+. .+|++|+|++|+|+.+ .|..++++++|++|+|++|++..+|..
T Consensus 14 ~~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 76 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKL----------------EPGVFDHLVNLQQLYFNSNKLTAIPTGV 76 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCC----------------CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CcEEEeCCCCCCccCCCcC-CCCcEEEeCCCCcccc----------------CHHHhcCCcCCCEEECCCCCCCccChhH
Confidence 3577777777777776552 6666666666655432 244677788888888888887777765
Q ss_pred CCCCCCCCEEEccCCCCCCCCcc-cCCCcccCccccccccceecchhh
Q 039656 281 LSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFEHLPASI 327 (660)
Q Consensus 281 l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i 327 (660)
+.++++|+.|+|++|.+..+|+. +..+++|++|+|++|.+...+..+
T Consensus 77 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 46788888888888888887765 777888888888888777655433
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=2.8e-14 Score=138.31 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=49.8
Q ss_pred cccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceecch--hhhcCCCCC
Q 039656 257 SIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHLPA--SIKKLSRLT 334 (660)
Q Consensus 257 si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~ 334 (660)
.+..+++|++|++++|.+..+|..+..+++|+.|+|++|.+..+| .++.+++|++|++++|.++.+|. .+..+++|+
T Consensus 65 ~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 345555555555555555555554445555666666666555554 45555566666666665555443 455556666
Q ss_pred eecccCccCCCC
Q 039656 335 YLNLSGCNMLRS 346 (660)
Q Consensus 335 ~L~L~~c~~l~~ 346 (660)
+|++++|+....
T Consensus 144 ~L~l~~N~l~~~ 155 (198)
T 1ds9_A 144 DLLLAGNPLYND 155 (198)
T ss_dssp EEEECSCHHHHH
T ss_pred EEEecCCccccc
Confidence 666665554333
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=4.1e-11 Score=113.53 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=87.8
Q ss_pred eeecCCCCCCcccCccccCCCCCcEEEecCCCCcCC-CCCCCCCCCCCEEEccCCCCCCCCcc-cCCCcccCcccccccc
Q 039656 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVL-PRVLSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNN 319 (660)
Q Consensus 242 ~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~l-p~~l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~ 319 (660)
+.++++++.++.+|..+. ++|++|++++|.+..+ |..+.++++|++|+|++|++..+|.. +..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456667777778888765 8999999999998887 56788999999999999999998876 5899999999999999
Q ss_pred ceecchh-hhcCCCCCeecccCccCC
Q 039656 320 FEHLPAS-IKKLSRLTYLNLSGCNML 344 (660)
Q Consensus 320 l~~lp~~-i~~l~~L~~L~L~~c~~l 344 (660)
++.+|.. +..+++|+.|+|++|+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 9998876 889999999999998743
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=1.6e-13 Score=132.97 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=113.6
Q ss_pred cCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccCCCe
Q 039656 164 TSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWKGEK 242 (660)
Q Consensus 164 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~~l~ 242 (660)
....+++.+++..+.+.|. ......+|..+..++ +|++|++++|.+..+| .+ .+++|+.|++++|.+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~--~~~l~~l~~~~~~l~-~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l-------- 82 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGM--IPPIEKMDATLSTLK-ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI-------- 82 (198)
T ss_dssp HHTTCCCCTTCSEEECCBC--CTTCCCCHHHHHHTT-TCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEE--------
T ss_pred HhcccccCcchheeEeccc--cCcHhhhhHHHhcCC-CCCEEECCCCCCcccc-ccccCCCCCEEECCCCCc--------
Confidence 3444555555554444321 011223444777777 8889999888888888 55 677888877776654
Q ss_pred eecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCc--ccCCCcccCccccccccc
Q 039656 243 YLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQ--DIGSLSSLEWFVLSGNNF 320 (660)
Q Consensus 243 ~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~--~l~~l~~L~~L~L~~n~l 320 (660)
+.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|.+
T Consensus 83 ---------~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 83 ---------KKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ---------CSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ---------ccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 456777777899999999999988887 58889999999999999998664 788999999999999999
Q ss_pred eecchh-----------hhcCCCCCeec
Q 039656 321 EHLPAS-----------IKKLSRLTYLN 337 (660)
Q Consensus 321 ~~lp~~-----------i~~l~~L~~L~ 337 (660)
...+.. +..+++|+.|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC
Confidence 854322 78889999887
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=5.9e-11 Score=111.90 Aligned_cols=103 Identities=24% Similarity=0.369 Sum_probs=62.5
Q ss_pred ceEEEeeCCCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcCCCCC-
Q 039656 202 LRYLHWYGYPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVLPRV- 280 (660)
Q Consensus 202 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~lp~~- 280 (660)
.+.|+++++.++.+|..+ ..+|++|+|++|+|+.+ .|..+.++++|++|++++|++..+|+.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 73 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKL----------------EPGVFDRLTQLTRLDLDNNQLTVLPAGV 73 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCC----------------CTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCcc----------------ChhhhcCcccCCEEECCCCCcCccChhh
Confidence 566666666666666544 35555555554444322 134566666777777777766666554
Q ss_pred CCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccce
Q 039656 281 LSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFE 321 (660)
Q Consensus 281 l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~ 321 (660)
+.++++|++|+|++|.+..+|+ .+..+++|++|+|++|.+.
T Consensus 74 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 3566667777777776666554 3666666666666666655
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=8.4e-11 Score=110.84 Aligned_cols=102 Identities=21% Similarity=0.380 Sum_probs=81.0
Q ss_pred eeecCCCCCCcccCccccCCCCCcEEEecCCCCcCC-CCCCCCCCCCCEEEccCCCCCCCCcc-cCCCcccCcccccccc
Q 039656 242 KYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASVL-PRVLSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNN 319 (660)
Q Consensus 242 ~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~l-p~~l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~ 319 (660)
+.++++++.++.+|..+. ++|++|++++|.+..+ |..+.++++|++|+|++|++..+|+. +..+++|++|+|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 345566666677777663 7888999999988877 55688889999999999998887765 5788899999999999
Q ss_pred ceecchh-hhcCCCCCeecccCccCCC
Q 039656 320 FEHLPAS-IKKLSRLTYLNLSGCNMLR 345 (660)
Q Consensus 320 l~~lp~~-i~~l~~L~~L~L~~c~~l~ 345 (660)
++.+|.. +..+++|+.|+|++|+...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 9888764 7888899999998887543
No 136
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.14 E-value=5.1e-12 Score=155.24 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=98.7
Q ss_pred CeeeecccccCCHHHHHHHHHHHhcCCC-----------chhhhhhhccccccchhhhceeeeeecCCCCCC--HHHHHH
Q 039656 1 KLEALGQFLTKSKLDWKNALKNLTRISN-----------PNIYDVLKISYNELKKEEKSIFLDIACFFKGED--KDYMTM 67 (660)
Q Consensus 1 AlkvlG~~L~~k~~eW~~~l~~l~~~~~-----------~~I~~~LklSYd~Lp~~lK~cFLy~a~Fp~~~~--~~~l~~ 67 (660)
||+++|+.|+.+..+|+..++++..... ..+..+|++||+.||+++|.||+|||+||+++. .+.++.
T Consensus 323 al~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~ 402 (1249)
T 3sfz_A 323 VVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCV 402 (1249)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHH
T ss_pred HHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHH
Confidence 6889999999885579999998865431 348999999999999999999999999999986 578999
Q ss_pred HhcCCCC-ccccchhhhcCCCEEEecCCe---EeecHHHHHHHHHHHhhh
Q 039656 68 IQDYPDY-ADYGVNFLVDKSLITISCYNK---LQMHDLLQEMGQEIVRQE 113 (660)
Q Consensus 68 iw~a~gf-~~~~i~~Li~rsLi~~~~~~~---~~MHDLl~d~~~~i~~~e 113 (660)
+|.+++. ++.++++|+++|||+...++. |+|||++|+++++.+.++
T Consensus 403 ~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 403 LWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9998877 888999999999999886664 999999999999987655
No 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.10 E-value=6e-12 Score=145.64 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=87.0
Q ss_pred CeeeecccccCC---HHHHHHHHHHHhcCCCchhhhhhhccccccchhh-hceeeeeecCCCCCCH--HHHHHHhcCCCC
Q 039656 1 KLEALGQFLTKS---KLDWKNALKNLTRISNPNIYDVLKISYNELKKEE-KSIFLDIACFFKGEDK--DYMTMIQDYPDY 74 (660)
Q Consensus 1 AlkvlG~~L~~k---~~eW~~~l~~l~~~~~~~I~~~LklSYd~Lp~~l-K~cFLy~a~Fp~~~~~--~~l~~iw~a~gf 74 (660)
||+++|+.|+++ .++|+.+ ....|..+|++||+.||+++ |+||+|||+||+++.+ +.++.+|+++|.
T Consensus 329 ALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe 401 (1221)
T 1vt4_I 329 RLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401 (1221)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS
T ss_pred HHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH
Confidence 688999999987 7889864 35789999999999999999 9999999999999874 678999999975
Q ss_pred --ccccchhhhcCCCEEEec-CCeEeecHHHHHHH
Q 039656 75 --ADYGVNFLVDKSLITISC-YNKLQMHDLLQEMG 106 (660)
Q Consensus 75 --~~~~i~~Li~rsLi~~~~-~~~~~MHDLl~d~~ 106 (660)
++.++++|++||||+... .++|+||||+++++
T Consensus 402 edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 778899999999999863 56899999998865
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.02 E-value=3e-11 Score=136.55 Aligned_cols=164 Identities=15% Similarity=0.003 Sum_probs=106.9
Q ss_pred cCCcCceEEEeeCCCCCCCCC-----CC-CCCCceEEeCCCCCCccc-----------cCCCeeecCCCCCCcccCcccc
Q 039656 197 YLPEELRYLHWYGYPLRTLPS-----NF-DPENLIALNLPYSKVEQI-----------WKGEKYLNVDGSAISHLPSSIA 259 (660)
Q Consensus 197 ~l~~~Lr~L~l~~~~l~~lP~-----~~-~l~~L~~L~L~~n~l~~l-----------~~~l~~L~l~~~~l~~lp~si~ 259 (660)
.++ +|++|++++|.+..... .. .+++|++|++++|.++.+ .++++.|+++++.+..+|..+.
T Consensus 162 ~~~-~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCR-KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCT-TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCC-CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 445 77777777776533221 11 467777777777777521 3567777777777777777777
Q ss_pred CCCCCcEEEecCCCC----cCCCCCCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccce--ecchhhhcCCCC
Q 039656 260 DLNKLEDLSFFGCKA----SVLPRVLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFE--HLPASIKKLSRL 333 (660)
Q Consensus 260 ~L~~L~~L~l~~~~~----~~lp~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L 333 (660)
++++|+.|+++.+.. ...+..+..+++|+.|+++++....+|..+..+++|++|++++|.++ .++..+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 777788887775432 23345566777788888877666667777777888888888877765 333446777888
Q ss_pred CeecccCccCCCCCCCC---CcCCcEEeccc
Q 039656 334 TYLNLSGCNMLRSLPEL---PIRLICLDARN 361 (660)
Q Consensus 334 ~~L~L~~c~~l~~lp~~---~~~L~~L~l~~ 361 (660)
+.|++.++.....++.. .++|++|++.+
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 88887744322223322 45677777774
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.01 E-value=2.1e-11 Score=137.84 Aligned_cols=199 Identities=14% Similarity=0.029 Sum_probs=149.9
Q ss_pred cCCCCccEEEEecCCCCCcccCCcceecCCcccc-CCcCceEEEeeCCCC---CCCCCCC-CCCCceEEeCCCCCCccc-
Q 039656 164 TSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEY-LPEELRYLHWYGYPL---RTLPSNF-DPENLIALNLPYSKVEQI- 237 (660)
Q Consensus 164 ~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~-l~~~Lr~L~l~~~~l---~~lP~~~-~l~~L~~L~L~~n~l~~l- 237 (660)
..+++|+.|++++|.+++ ..+..+.. ++.+|++|++++|.. ..++... .+++|++|+|++|.+...
T Consensus 109 ~~~~~L~~L~L~~~~i~~--------~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSD--------LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180 (592)
T ss_dssp HHCTTCCEEEEESCBCCH--------HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC
T ss_pred hhCCCCCeEEeeccEecH--------HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc
Confidence 378999999999887642 12222333 343599999999862 1222222 678999999999986432
Q ss_pred ----------cCCCeeecCCCCCCc-----ccCccccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCC----
Q 039656 238 ----------WKGEKYLNVDGSAIS-----HLPSSIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLI---- 298 (660)
Q Consensus 238 ----------~~~l~~L~l~~~~l~-----~lp~si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~---- 298 (660)
.+.++.|++++|.+. .++..+.++++|++|++++|.+..+|..+.++++|++|+++.+...
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCT
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchH
Confidence 468899999999986 4555567899999999999998889988999999999999865432
Q ss_pred CCCcccCCCcccCccccccccceecchhhhcCCCCCeecccCccCCCC-CC---CCCcCCcEEecc-------------c
Q 039656 299 KIPQDIGSLSSLEWFVLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRS-LP---ELPIRLICLDAR-------------N 361 (660)
Q Consensus 299 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~-lp---~~~~~L~~L~l~-------------~ 361 (660)
..+..+..+++|+.|+++.+....+|..+..+++|++|+|++|..... ++ ..+++|+.|++. +
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHh
Confidence 255678889999999999877778998889999999999999983322 11 346789999884 4
Q ss_pred CcCCcccCC
Q 039656 362 CERLRTLQE 370 (660)
Q Consensus 362 c~~L~~l~~ 370 (660)
|++|+.|..
T Consensus 341 ~~~L~~L~L 349 (592)
T 3ogk_B 341 CKQLKRLRI 349 (592)
T ss_dssp CTTCCEEEE
T ss_pred CCCCCEEEe
Confidence 566666643
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.92 E-value=1.5e-09 Score=114.30 Aligned_cols=92 Identities=24% Similarity=0.211 Sum_probs=46.0
Q ss_pred CCcccCccccCCCCCcEEEecC-CCCcCCC-CCCCCCCCCCEEEccCCCCCCCC-cccCCCcccCccccccccceecchh
Q 039656 250 AISHLPSSIADLNKLEDLSFFG-CKASVLP-RVLSGLSSLKWMELRDCDLIKIP-QDIGSLSSLEWFVLSGNNFEHLPAS 326 (660)
Q Consensus 250 ~l~~lp~si~~L~~L~~L~l~~-~~~~~lp-~~l~~L~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~~ 326 (660)
+++.+|. +..+++|+.|+|++ |.+..+| ..+.+|++|+.|+|++|++.++| ..|+.|++|+.|+|++|+|+.+|..
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 4445555 55555555555553 5555444 23555555555555555555533 2345555555555555555555543
Q ss_pred hhcCCCCCeecccCcc
Q 039656 327 IKKLSRLTYLNLSGCN 342 (660)
Q Consensus 327 i~~l~~L~~L~L~~c~ 342 (660)
+.....|+.|+|.+|+
T Consensus 99 ~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTCSCCCCEEECCSSC
T ss_pred HcccCCceEEEeeCCC
Confidence 3222225555555443
No 141
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.90 E-value=2.3e-10 Score=129.61 Aligned_cols=138 Identities=17% Similarity=0.236 Sum_probs=105.8
Q ss_pred CeeeecccccCCHHHHHHHHHHHhcCC-----------CchhhhhhhccccccchhhhceeeeeecCCCCCC--HHHHHH
Q 039656 1 KLEALGQFLTKSKLDWKNALKNLTRIS-----------NPNIYDVLKISYNELKKEEKSIFLDIACFFKGED--KDYMTM 67 (660)
Q Consensus 1 AlkvlG~~L~~k~~eW~~~l~~l~~~~-----------~~~I~~~LklSYd~Lp~~lK~cFLy~a~Fp~~~~--~~~l~~ 67 (660)
||+++|+.|+++..+|+.+++.+.... ...|..+|..||+.||+++|.||++||+||+|+. .+.+..
T Consensus 323 al~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~ 402 (591)
T 1z6t_A 323 VVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCI 402 (591)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHH
Confidence 577888988887558999999887543 2468999999999999999999999999999876 467888
Q ss_pred HhcCCCC-ccccchhhhcCCCEEEecCC---eEeecHHHHHHHHHHHhh------------hc-------cCCCCCcccc
Q 039656 68 IQDYPDY-ADYGVNFLVDKSLITISCYN---KLQMHDLLQEMGQEIVRQ------------ES-------VRDPSKRSRL 124 (660)
Q Consensus 68 iw~a~gf-~~~~i~~Li~rsLi~~~~~~---~~~MHDLl~d~~~~i~~~------------e~-------~~~p~~~~rL 124 (660)
+|.+++. +..++++|+++|||+...++ .|+|||++|+++++.... .. ...++.+.++
T Consensus 403 l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~ 482 (591)
T 1z6t_A 403 LWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMY 482 (591)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHH
T ss_pred HhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEe
Confidence 9987754 67789999999999976532 699999999999877221 10 1123344556
Q ss_pred cCchhHHHHhhcCc
Q 039656 125 WHHEDVYNVLKRNK 138 (660)
Q Consensus 125 ~~~~di~~vl~~~~ 138 (660)
|..+.+.+++..+.
T Consensus 483 ~~~~~~~H~~~a~~ 496 (591)
T 1z6t_A 483 WYNFLAYHMASAKM 496 (591)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred ehhhHHHHHHhcCC
Confidence 66667777766543
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.86 E-value=3.3e-11 Score=136.21 Aligned_cols=170 Identities=21% Similarity=0.176 Sum_probs=93.1
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCC-----CCCCC-CCCCceEEeCCCCC--Cc-
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRT-----LPSNF-DPENLIALNLPYSK--VE- 235 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~-----lP~~~-~l~~L~~L~L~~n~--l~- 235 (660)
.+++|+.|++.+|..- ....++.....++ +|++|++++|.+.. ++... .+++|++|++++|. +.
T Consensus 128 ~~~~L~~L~L~~~~~~------~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 200 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGF------STDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200 (594)
T ss_dssp HCTTCCEEEEESCEEE------EHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH
T ss_pred hCCCCcEEeCCCcCCC------CHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH
Confidence 5778888888776310 1111333333555 78888888876533 22222 56788888888775 21
Q ss_pred ----cc---cCCCeeecCCCC-CCcccCccccCCCCCcEEEecCCCC-------cCCCCCCCCCCCCCEE-EccCCCCCC
Q 039656 236 ----QI---WKGEKYLNVDGS-AISHLPSSIADLNKLEDLSFFGCKA-------SVLPRVLSGLSSLKWM-ELRDCDLIK 299 (660)
Q Consensus 236 ----~l---~~~l~~L~l~~~-~l~~lp~si~~L~~L~~L~l~~~~~-------~~lp~~l~~L~~L~~L-~Ls~~~l~~ 299 (660)
.+ .++++.|+++++ .+..+|..+.++++|+.|++..+.. ..++..+.++++|+.| .+.+.....
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~ 280 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGG
T ss_pred HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhh
Confidence 11 367778887766 5556666677777777777655431 1222334444555554 233222222
Q ss_pred CCcccCCCcccCccccccccce--ecchhhhcCCCCCeecccCc
Q 039656 300 IPQDIGSLSSLEWFVLSGNNFE--HLPASIKKLSRLTYLNLSGC 341 (660)
Q Consensus 300 lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c 341 (660)
+|..+..+++|++|++++|.++ .++..+..+++|+.|++++|
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 3333334555666666655544 22333445556666666555
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=7.3e-09 Score=108.26 Aligned_cols=173 Identities=14% Similarity=0.153 Sum_probs=94.6
Q ss_pred CCCccEEEEecCCCCCcccC-----------CcceecCCccccC--------CcCceEEEeeCCCCCCCCCC-C-CCCCc
Q 039656 166 MSNLRLLKFYMPNRDGFSIM-----------SSKVHLDQGLEYL--------PEELRYLHWYGYPLRTLPSN-F-DPENL 224 (660)
Q Consensus 166 l~~Lr~L~l~~n~~~~~~~~-----------~~~~~lp~~l~~l--------~~~Lr~L~l~~~~l~~lP~~-~-~l~~L 224 (660)
+++|+.|+|++|.+...... .....+|...+.- ..+|+.|++.. .++.++.. | ++.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 67788888888876510000 0011344443333 23788888887 77777755 3 77888
Q ss_pred eEEeCCCCCCccccCC-------CeeecCCCC------------------CCc---------ccCccc------------
Q 039656 225 IALNLPYSKVEQIWKG-------EKYLNVDGS------------------AIS---------HLPSSI------------ 258 (660)
Q Consensus 225 ~~L~L~~n~l~~l~~~-------l~~L~l~~~------------------~l~---------~lp~si------------ 258 (660)
+.|+++.|.+..+.++ +..+....+ .++ .+|..+
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 8888888877665442 122222210 000 000000
Q ss_pred ----------------cCCCCCcEEEecCCCCcCCCC-CCCCCCCCCEEEccCCCCCCCCc-ccCCCcccC-cccccccc
Q 039656 259 ----------------ADLNKLEDLSFFGCKASVLPR-VLSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLE-WFVLSGNN 319 (660)
Q Consensus 259 ----------------~~L~~L~~L~l~~~~~~~lp~-~l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~-~L~L~~n~ 319 (660)
..+++|+.|++.+|.+..+|. .|.++++|+.|+|.+| +..+++ .|.++.+|+ .|++.. +
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 015566666666666666554 3556666666666665 555443 466666666 666665 5
Q ss_pred ceecc-hhhhcCCCCCeecccCc
Q 039656 320 FEHLP-ASIKKLSRLTYLNLSGC 341 (660)
Q Consensus 320 l~~lp-~~i~~l~~L~~L~L~~c 341 (660)
++.++ ..+.++++|+.|++.++
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSS
T ss_pred ceEEchhhhhCCccCCEEEeCCC
Confidence 55554 34566666666666543
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=8.2e-09 Score=108.54 Aligned_cols=102 Identities=22% Similarity=0.220 Sum_probs=81.0
Q ss_pred EEEeeCC-CCCCCCCCC-CCCCceEEeCCC-CCCccccCCCeeecCCCCCCcccC-ccccCCCCCcEEEecCCCCcCCCC
Q 039656 204 YLHWYGY-PLRTLPSNF-DPENLIALNLPY-SKVEQIWKGEKYLNVDGSAISHLP-SSIADLNKLEDLSFFGCKASVLPR 279 (660)
Q Consensus 204 ~L~l~~~-~l~~lP~~~-~l~~L~~L~L~~-n~l~~l~~~l~~L~l~~~~l~~lp-~si~~L~~L~~L~l~~~~~~~lp~ 279 (660)
.++.+++ .+..+|. + .+.+|+.|+|++ |+|+ .+| ..+++|++|+.|+|++|.+..+|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~-----------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQ-----------------HLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCC-----------------EECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCC-----------------CcChhHhccccCCCEEECCCCccceeCH
Confidence 4577777 8888998 7 777888888874 6665 344 468889999999999999887765
Q ss_pred -CCCCCCCCCEEEccCCCCCCCCcccCCCcccCccccccccceec
Q 039656 280 -VLSGLSSLKWMELRDCDLIKIPQDIGSLSSLEWFVLSGNNFEHL 323 (660)
Q Consensus 280 -~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~l 323 (660)
.|.+|++|+.|+|++|++..+|+.+.....|+.|+|.+|.+...
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCC
Confidence 57889999999999999999887655444599999999988843
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.5e-08 Score=105.74 Aligned_cols=169 Identities=14% Similarity=0.149 Sum_probs=131.5
Q ss_pred ecCcccccC--------CCCccEEEEecCCCCCcccCCcceecCCc-cccCCcCceEEEeeCCCCCCCCCCC--CCCCce
Q 039656 157 HLACGTFTS--------MSNLRLLKFYMPNRDGFSIMSSKVHLDQG-LEYLPEELRYLHWYGYPLRTLPSNF--DPENLI 225 (660)
Q Consensus 157 ~l~~~~f~~--------l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~-l~~l~~~Lr~L~l~~~~l~~lP~~~--~l~~L~ 225 (660)
.++..+|.+ +++|+.|.+.+ .+. .++.. +..++ +|+.|++.+|.+..++... +..++.
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~---------~I~~~aF~~~~-~L~~l~l~~n~i~~i~~~aF~~~~~l~ 151 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK---------NIEDAAFKGCD-NLKICQIRKKTAPNLLPEALADSVTAI 151 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCC---------EECTTTTTTCT-TCCEEEBCCSSCCEECTTSSCTTTCEE
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-ccc---------chhHHHhhcCc-ccceEEcCCCCccccchhhhcCCCceE
Confidence 567788888 99999999976 442 45544 55555 8999999999887777554 556666
Q ss_pred EEeCCCCCC------------------c-------------------------------------------cccCCCeee
Q 039656 226 ALNLPYSKV------------------E-------------------------------------------QIWKGEKYL 244 (660)
Q Consensus 226 ~L~L~~n~l------------------~-------------------------------------------~l~~~l~~L 244 (660)
.+.+..+.. + ...++++.|
T Consensus 152 ~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l 231 (329)
T 3sb4_A 152 FIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSL 231 (329)
T ss_dssp EECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEE
T ss_pred EecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEE
Confidence 666554110 0 014578999
Q ss_pred cCCCCCCcccCc-cccCCCCCcEEEecCCCCcCCC-CCCCCCCCCC-EEEccCCCCCCCC-cccCCCcccCccccccccc
Q 039656 245 NVDGSAISHLPS-SIADLNKLEDLSFFGCKASVLP-RVLSGLSSLK-WMELRDCDLIKIP-QDIGSLSSLEWFVLSGNNF 320 (660)
Q Consensus 245 ~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~lp-~~l~~L~~L~-~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l 320 (660)
++..|+++.+|+ .+.++++|+.|++.+| +..++ ..|.++++|+ .|++.+ ++..++ ..|.++++|+.|+++.|++
T Consensus 232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 232 DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 999999999987 6889999999999998 66665 4578999999 999998 787765 5799999999999999999
Q ss_pred eecch-hhhcCCCCCeecc
Q 039656 321 EHLPA-SIKKLSRLTYLNL 338 (660)
Q Consensus 321 ~~lp~-~i~~l~~L~~L~L 338 (660)
+.++. .+.++++|+.|+.
T Consensus 310 ~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 310 TTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTCTTCCCCEEEC
T ss_pred CccchhhhcCCcchhhhcc
Confidence 98886 5788999998863
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.72 E-value=1.1e-10 Score=132.03 Aligned_cols=191 Identities=19% Similarity=0.109 Sum_probs=126.1
Q ss_pred ccCCCCccEEEEecCCCCCcccCCcceecCCccc-cCCcCceEEEeeCC-CCCC--CCCCC-CCCCceEEeCCCCCCcc-
Q 039656 163 FTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLE-YLPEELRYLHWYGY-PLRT--LPSNF-DPENLIALNLPYSKVEQ- 236 (660)
Q Consensus 163 f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~-~l~~~Lr~L~l~~~-~l~~--lP~~~-~l~~L~~L~L~~n~l~~- 236 (660)
+..+++|+.|++++|.+++ ..+..+. .++ +|++|++++| .++. ++... .+++|++|++++|.++.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~--------~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTD--------DCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp HHHCTTCCEEEEESCBCCH--------HHHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC
T ss_pred HHhCCCCCeEEeeCcEEcH--------HHHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc
Confidence 3467889999998887642 1222232 355 8999999988 4433 44444 67899999999887543
Q ss_pred -------c---cCCCeeecCCCCC--Cc--ccCccccCCCCCcEEEecCCC-CcCCCCCCCCCCCCCEEEccCCCC----
Q 039656 237 -------I---WKGEKYLNVDGSA--IS--HLPSSIADLNKLEDLSFFGCK-ASVLPRVLSGLSSLKWMELRDCDL---- 297 (660)
Q Consensus 237 -------l---~~~l~~L~l~~~~--l~--~lp~si~~L~~L~~L~l~~~~-~~~lp~~l~~L~~L~~L~Ls~~~l---- 297 (660)
+ .++++.|+++++. +. .++.-+.++++|++|++++|. ...+|..+.++++|+.|+++.+..
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 1 2367778777775 21 222223456888888888873 445666667778888888766542
Q ss_pred ---CCCCcccCCCcccCcc-ccccccceecchhhhcCCCCCeecccCccCCCC-CC---CCCcCCcEEecccC
Q 039656 298 ---IKIPQDIGSLSSLEWF-VLSGNNFEHLPASIKKLSRLTYLNLSGCNMLRS-LP---ELPIRLICLDARNC 362 (660)
Q Consensus 298 ---~~lp~~l~~l~~L~~L-~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~l~~-lp---~~~~~L~~L~l~~c 362 (660)
.+++..+.++++|+.| .+.......+|..+..+++|++|+|++|..... ++ ...++|+.|++.+|
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 2345567777888887 555544456777677889999999999883221 11 23578888888764
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.71 E-value=8.8e-10 Score=117.37 Aligned_cols=163 Identities=15% Similarity=0.074 Sum_probs=98.3
Q ss_pred CCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCC--CCCC-CCCCceEEeCCCCCCccccCCCe
Q 039656 166 MSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTL--PSNF-DPENLIALNLPYSKVEQIWKGEK 242 (660)
Q Consensus 166 l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~l--P~~~-~l~~L~~L~L~~n~l~~l~~~l~ 242 (660)
+++|+.|++++|.++.. ....+...+...+.+|+.|++++|.++.- .... .+.+|+.|+|++|.+....
T Consensus 71 ~~~L~~L~Ls~n~l~~~----~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~---- 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPV----KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA---- 142 (372)
T ss_dssp HTTCCEEECTTSCCCHH----HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH----
T ss_pred HhhCCEEEecCCCCCHH----HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH----
Confidence 45677888877776420 01122222332323677777777766421 1111 3456667776666654210
Q ss_pred eecCCCCCCcccCccc-cCCCCCcEEEecCCCCcC-----CCCCCCCCCCCCEEEccCCCCCC-----CCcccCCCcccC
Q 039656 243 YLNVDGSAISHLPSSI-ADLNKLEDLSFFGCKASV-----LPRVLSGLSSLKWMELRDCDLIK-----IPQDIGSLSSLE 311 (660)
Q Consensus 243 ~L~l~~~~l~~lp~si-~~L~~L~~L~l~~~~~~~-----lp~~l~~L~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~ 311 (660)
...+...+ ...++|++|+|++|.+.. ++..+...++|++|+|++|.+.. ++..+...++|+
T Consensus 143 --------~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 143 --------CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp --------HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred --------HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence 01122222 245678888888887653 44445667788888888888764 455666777888
Q ss_pred ccccccccce-----ecchhhhcCCCCCeecccCccCC
Q 039656 312 WFVLSGNNFE-----HLPASIKKLSRLTYLNLSGCNML 344 (660)
Q Consensus 312 ~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~~l 344 (660)
.|+|++|.++ .++..+...++|++|+|++|...
T Consensus 215 ~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 8888888877 34455667788888888888643
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.66 E-value=5.9e-10 Score=118.74 Aligned_cols=138 Identities=16% Similarity=0.087 Sum_probs=98.7
Q ss_pred CCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCC-----CCC--CCCCceEEeCCCCCCccc
Q 039656 165 SMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLP-----SNF--DPENLIALNLPYSKVEQI 237 (660)
Q Consensus 165 ~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP-----~~~--~l~~L~~L~L~~n~l~~l 237 (660)
..++|+.|+|++|.++. ..+..-...++ +|+.|++++|.++... ..+ ...+|++|+|++|.|...
T Consensus 99 ~~~~L~~L~Ls~n~l~~-------~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~ 170 (372)
T 3un9_A 99 GRHALDEVNLASCQLDP-------AGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA 170 (372)
T ss_dssp CSSCEEEEECTTCCCCH-------HHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH
T ss_pred CCCCceEEEecCCCCCH-------HHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH
Confidence 34799999999998742 11111122233 7999999999885432 111 246788888888877531
Q ss_pred cCCCeeecCCCCCCcccCccccCCCCCcEEEecCCCCcC-----CCCCCCCCCCCCEEEccCCCCCC-----CCcccCCC
Q 039656 238 WKGEKYLNVDGSAISHLPSSIADLNKLEDLSFFGCKASV-----LPRVLSGLSSLKWMELRDCDLIK-----IPQDIGSL 307 (660)
Q Consensus 238 ~~~l~~L~l~~~~l~~lp~si~~L~~L~~L~l~~~~~~~-----lp~~l~~L~~L~~L~Ls~~~l~~-----lp~~l~~l 307 (660)
....++..+..+++|++|+|++|.+.. ++..+...++|+.|+|++|.+.. ++..+...
T Consensus 171 ------------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~ 238 (372)
T 3un9_A 171 ------------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH 238 (372)
T ss_dssp ------------HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHC
T ss_pred ------------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhC
Confidence 122455566788899999999998764 35556777899999999999975 44556677
Q ss_pred cccCcccccccccee
Q 039656 308 SSLEWFVLSGNNFEH 322 (660)
Q Consensus 308 ~~L~~L~L~~n~l~~ 322 (660)
++|++|+|++|.++.
T Consensus 239 ~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 239 PSLELLHLYFNELSS 253 (372)
T ss_dssp SSCCEEECTTSSCCH
T ss_pred CCCCEEeccCCCCCH
Confidence 899999999999883
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.56 E-value=5.9e-07 Score=96.40 Aligned_cols=135 Identities=12% Similarity=0.143 Sum_probs=66.2
Q ss_pred CceEEEeeCCCCCCCCCCC-CCCCceEEeCCCCCCccccC-------CCeeecCCCCCCcccCcc-ccCCCCCcEEEecC
Q 039656 201 ELRYLHWYGYPLRTLPSNF-DPENLIALNLPYSKVEQIWK-------GEKYLNVDGSAISHLPSS-IADLNKLEDLSFFG 271 (660)
Q Consensus 201 ~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~n~l~~l~~-------~l~~L~l~~~~l~~lp~s-i~~L~~L~~L~l~~ 271 (660)
+|+.+++.+|.++.+|... ...+|+.+.++.+ ++.+.. .++.+.+.. +++.++.. +.+ .+|+.+.+.+
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEET
T ss_pred cCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCC
Confidence 5666666555555555433 4455555555532 433321 334444443 24444432 222 5566666632
Q ss_pred CCCcCC-CCCCCCCCCCCEEEccCCCCC-----CCC-cccCCCcccCccccccccceecch-hhhcCCCCCeecccC
Q 039656 272 CKASVL-PRVLSGLSSLKWMELRDCDLI-----KIP-QDIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLTYLNLSG 340 (660)
Q Consensus 272 ~~~~~l-p~~l~~L~~L~~L~Ls~~~l~-----~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~ 340 (660)
.+..+ +..+.++++|+.+.+.++.+. .++ ..|..+++|+.+.|. ++++.++. .+.++++|+.|.|..
T Consensus 258 -~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 258 -GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp -TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT
T ss_pred -CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc
Confidence 23333 234555666666666555443 222 345556666666665 33554443 345556666666643
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.44 E-value=2.2e-06 Score=92.00 Aligned_cols=174 Identities=12% Similarity=0.160 Sum_probs=120.3
Q ss_pred ecCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCC-C-CCCCceEEeCCCCCC
Q 039656 157 HLACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSN-F-DPENLIALNLPYSKV 234 (660)
Q Consensus 157 ~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~-~-~l~~L~~L~L~~n~l 234 (660)
.+...+|.+. +|+.+.+..+ + ..++...+.-. +|+.+.+.. .++.++.. | ++.+|+.++++.|++
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~-i---------~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l 192 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEG-L---------KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI 192 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTT-C---------CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC
T ss_pred EehHhhcccC-CccEEEeCCC-c---------cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc
Confidence 3556788885 7999888654 2 24444433334 699999876 67777744 4 789999999999988
Q ss_pred ccccC------CCeeecCCCCCCcccCc-cccCCCCCcEEEecCCCCcCCCCC-CCCCCCCCEEEccCCCCCCCC-cccC
Q 039656 235 EQIWK------GEKYLNVDGSAISHLPS-SIADLNKLEDLSFFGCKASVLPRV-LSGLSSLKWMELRDCDLIKIP-QDIG 305 (660)
Q Consensus 235 ~~l~~------~l~~L~l~~~~l~~lp~-si~~L~~L~~L~l~~~~~~~lp~~-l~~L~~L~~L~Ls~~~l~~lp-~~l~ 305 (660)
+.++. +++.+.+. ++++.++. .+.++++|+.+++..+ +..++.. +.+ .+|+.+.|. +++..++ ..|.
T Consensus 193 ~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~ 268 (401)
T 4fdw_A 193 TKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFY 268 (401)
T ss_dssp SEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTT
T ss_pred eEechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhh
Confidence 87755 45666665 34666654 5678888898888764 4445443 444 788888884 4566654 4688
Q ss_pred CCcccCccccccccce-----ecc-hhhhcCCCCCeecccCccCCCCCCC
Q 039656 306 SLSSLEWFVLSGNNFE-----HLP-ASIKKLSRLTYLNLSGCNMLRSLPE 349 (660)
Q Consensus 306 ~l~~L~~L~L~~n~l~-----~lp-~~i~~l~~L~~L~L~~c~~l~~lp~ 349 (660)
++++|+.+.+.+|.+. .++ ..+..+++|+.+.|.+ .+..++.
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~ 316 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ 316 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh
Confidence 8889999988877665 444 3567888888888873 2555543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=1.1e-07 Score=100.60 Aligned_cols=189 Identities=17% Similarity=0.212 Sum_probs=110.4
Q ss_pred CcCCCcEEEEEeecCCCeeee------cCcccccCCCCccEEEEecCCCCCccc-CCcceecCCccccCCcCceEEEeeC
Q 039656 137 NKGTIAIEGIFLDMSKIRDIH------LACGTFTSMSNLRLLKFYMPNRDGFSI-MSSKVHLDQGLEYLPEELRYLHWYG 209 (660)
Q Consensus 137 ~~~~~~v~~i~l~~s~~~~~~------l~~~~f~~l~~Lr~L~l~~n~~~~~~~-~~~~~~lp~~l~~l~~~Lr~L~l~~ 209 (660)
......++.+.++......-. .-..+..++++|+.|.+.......... ......+..-+..+| +|+.|++++
T Consensus 103 ~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P-~L~~L~L~g 181 (362)
T 2ra8_A 103 DKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP-LLNNLKIKG 181 (362)
T ss_dssp CTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT-TCCEEEEEC
T ss_pred CCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCC-CCcEEEEeC
Confidence 334556777777754321000 001234567899999986543210000 000112333345556 899999988
Q ss_pred CCCCCCCCCCCCCCceEEeCCCCCCccccCCCeeecCCCCCCcccCccc--cCCCCCcEEEecCC--C------CcCCCC
Q 039656 210 YPLRTLPSNFDPENLIALNLPYSKVEQIWKGEKYLNVDGSAISHLPSSI--ADLNKLEDLSFFGC--K------ASVLPR 279 (660)
Q Consensus 210 ~~l~~lP~~~~l~~L~~L~L~~n~l~~l~~~l~~L~l~~~~l~~lp~si--~~L~~L~~L~l~~~--~------~~~lp~ 279 (660)
+.-..+|. +.+.+|++|++..+.+.. .....+ ..+++|+.|+|+.+ . ...+..
T Consensus 182 ~~~l~l~~-~~~~~L~~L~L~~~~l~~----------------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 182 TNNLSIGK-KPRPNLKSLEIISGGLPD----------------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp CBTCBCCS-CBCTTCSEEEEECSBCCH----------------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred CCCceecc-ccCCCCcEEEEecCCCCh----------------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 73224444 446778888776665431 000112 36788999988532 1 111212
Q ss_pred CC--CCCCCCCEEEccCCCCCC-CCcc---cCCCcccCcccccccccee-----cchhhhcCCCCCeecccCccC
Q 039656 280 VL--SGLSSLKWMELRDCDLIK-IPQD---IGSLSSLEWFVLSGNNFEH-----LPASIKKLSRLTYLNLSGCNM 343 (660)
Q Consensus 280 ~l--~~L~~L~~L~Ls~~~l~~-lp~~---l~~l~~L~~L~L~~n~l~~-----lp~~i~~l~~L~~L~L~~c~~ 343 (660)
.+ ..+++|++|+|++|.+.. .+.. ...+++|++|+|+.|.+.. ++..+..+++|+.|+|++|..
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 22 357899999999988764 1111 1357889999999888873 455567788999999988754
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.95 E-value=1e-06 Score=83.88 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=51.4
Q ss_pred CccccCCCCCcEEEecCCCCcC-----CCCCCCCCCCCCEEEccCCCCCC-----CCcccCCCcccCcccc--cccccee
Q 039656 255 PSSIADLNKLEDLSFFGCKASV-----LPRVLSGLSSLKWMELRDCDLIK-----IPQDIGSLSSLEWFVL--SGNNFEH 322 (660)
Q Consensus 255 p~si~~L~~L~~L~l~~~~~~~-----lp~~l~~L~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L--~~n~l~~ 322 (660)
...+...++|++|+|++|.+.. +...+...++|++|+|++|.+.. +...+...++|++|+| ++|.+..
T Consensus 58 ~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 58 AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 3344555666666766666542 23333444567777777776664 4445555666777777 5666652
Q ss_pred -----cchhhhcCCCCCeecccCcc
Q 039656 323 -----LPASIKKLSRLTYLNLSGCN 342 (660)
Q Consensus 323 -----lp~~i~~l~~L~~L~L~~c~ 342 (660)
+...+...+.|++|+|++|.
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCcCEEeccCCC
Confidence 44445555667777666654
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=6e-06 Score=83.00 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=49.8
Q ss_pred cCCCCCcEEEecCCCCcCCC---CCCCCCCCCCEEEccCCCCCCCCcccCCCc--ccCccccccccce-ecc-------h
Q 039656 259 ADLNKLEDLSFFGCKASVLP---RVLSGLSSLKWMELRDCDLIKIPQDIGSLS--SLEWFVLSGNNFE-HLP-------A 325 (660)
Q Consensus 259 ~~L~~L~~L~l~~~~~~~lp---~~l~~L~~L~~L~Ls~~~l~~lp~~l~~l~--~L~~L~L~~n~l~-~lp-------~ 325 (660)
.++++|+.|+|++|.+..++ ..+..+++|+.|+|++|.+.++ ..+..+. +|++|+|++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45677888888888766543 4445677777777777777765 2233333 6777777777766 343 2
Q ss_pred hhhcCCCCCeec
Q 039656 326 SIKKLSRLTYLN 337 (660)
Q Consensus 326 ~i~~l~~L~~L~ 337 (660)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 345667776665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.70 E-value=1.1e-05 Score=85.14 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=100.7
Q ss_pred ccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCC-CCC---CCCCceEEeCCCCCCcc
Q 039656 161 GTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLP-SNF---DPENLIALNLPYSKVEQ 236 (660)
Q Consensus 161 ~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP-~~~---~l~~L~~L~L~~n~l~~ 236 (660)
..+..+++|+.|.|.++.. ..++. + .++ +|+.|++..+.+..-. ..+ .+++|++|+|+.+.-..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~---------l~l~~-~-~~~-~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~ 233 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNN---------LSIGK-K-PRP-NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY 233 (362)
T ss_dssp HHHHTCTTCCEEEEECCBT---------CBCCS-C-BCT-TCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGG
T ss_pred HHHhcCCCCcEEEEeCCCC---------ceecc-c-cCC-CCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccc
Confidence 3457889999999987631 23443 3 255 8999999988763211 011 57889999885321000
Q ss_pred ccCCCeeecCCCCCCcccCccc--cCCCCCcEEEecCCCCcC-CCCC---CCCCCCCCEEEccCCCCCC-----CCcccC
Q 039656 237 IWKGEKYLNVDGSAISHLPSSI--ADLNKLEDLSFFGCKASV-LPRV---LSGLSSLKWMELRDCDLIK-----IPQDIG 305 (660)
Q Consensus 237 l~~~l~~L~l~~~~l~~lp~si--~~L~~L~~L~l~~~~~~~-lp~~---l~~L~~L~~L~Ls~~~l~~-----lp~~l~ 305 (660)
..+..+..+...+ ..+++|++|++.+|.+.. .+.. ...+++|++|+|+.|.+.. ++..+.
T Consensus 234 ---------~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 234 ---------GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304 (362)
T ss_dssp ---------TCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred ---------ccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc
Confidence 0111122222222 357899999999998652 1111 2357899999999999876 455667
Q ss_pred CCcccCccccccccce-ecchhhhc-CCCCCeecccCcc
Q 039656 306 SLSSLEWFVLSGNNFE-HLPASIKK-LSRLTYLNLSGCN 342 (660)
Q Consensus 306 ~l~~L~~L~L~~n~l~-~lp~~i~~-l~~L~~L~L~~c~ 342 (660)
.+++|+.|+|++|.++ ..-..+.. + ...++++++.
T Consensus 305 ~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 7899999999999877 22223332 2 3557777654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=3.8e-05 Score=77.17 Aligned_cols=67 Identities=19% Similarity=0.342 Sum_probs=56.5
Q ss_pred CCCCCCCEEEccCCCCCCC---CcccCCCcccCccccccccceecchhhhcCC--CCCeecccCccCCCCCCC
Q 039656 282 SGLSSLKWMELRDCDLIKI---PQDIGSLSSLEWFVLSGNNFEHLPASIKKLS--RLTYLNLSGCNMLRSLPE 349 (660)
Q Consensus 282 ~~L~~L~~L~Ls~~~l~~l---p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~--~L~~L~L~~c~~l~~lp~ 349 (660)
.++++|+.|+|++|.+..+ |..++.+++|+.|+|++|+++.+. .+..+. +|+.|+|++|+..+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCc
Confidence 4688999999999999885 456678999999999999999774 455555 999999999998877763
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.51 E-value=1.5e-05 Score=75.72 Aligned_cols=108 Identities=10% Similarity=0.092 Sum_probs=79.8
Q ss_pred CccccCCCCCcEEEecCC-CCcC-----CCCCCCCCCCCCEEEccCCCCCC-----CCcccCCCcccCcccccccccee-
Q 039656 255 PSSIADLNKLEDLSFFGC-KASV-----LPRVLSGLSSLKWMELRDCDLIK-----IPQDIGSLSSLEWFVLSGNNFEH- 322 (660)
Q Consensus 255 p~si~~L~~L~~L~l~~~-~~~~-----lp~~l~~L~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~- 322 (660)
...+...++|++|+|++| .+.. +...+...++|++|+|++|.+.. +...+...++|++|+|++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344677889999999999 7653 45556778899999999999875 45556667889999999999883
Q ss_pred ----cchhhhcCCCCCeecc--cCccCCCC----CCCC---CcCCcEEecccC
Q 039656 323 ----LPASIKKLSRLTYLNL--SGCNMLRS----LPEL---PIRLICLDARNC 362 (660)
Q Consensus 323 ----lp~~i~~l~~L~~L~L--~~c~~l~~----lp~~---~~~L~~L~l~~c 362 (660)
+...+...+.|++|+| ++|..... +.+. -++|++|++.+|
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 5667888899999999 76764322 1111 245666666544
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.34 E-value=0.00011 Score=68.75 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCCcEEEecCCCCcCC-CCCCCCCCCCCEEEccCCC-CCC-CCcccCCC----cccCccccccc-cce--ecchhhhcCC
Q 039656 262 NKLEDLSFFGCKASVL-PRVLSGLSSLKWMELRDCD-LIK-IPQDIGSL----SSLEWFVLSGN-NFE--HLPASIKKLS 331 (660)
Q Consensus 262 ~~L~~L~l~~~~~~~l-p~~l~~L~~L~~L~Ls~~~-l~~-lp~~l~~l----~~L~~L~L~~n-~l~--~lp~~i~~l~ 331 (660)
.+|+.||+++|.++.. -..+.++++|++|+|++|. +++ --..+..+ ++|++|+|++| +++ .+. .+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence 3566677776664321 1225567777777777774 443 11123332 35677777654 355 232 355667
Q ss_pred CCCeecccCccCCC
Q 039656 332 RLTYLNLSGCNMLR 345 (660)
Q Consensus 332 ~L~~L~L~~c~~l~ 345 (660)
+|++|+|++|+.++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 77777777666544
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.21 E-value=0.0002 Score=66.96 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=65.6
Q ss_pred CCCCCCCCCCCCEEEccCCCCCC-CCcccCCCcccCcccccccc-cee-cchhhhcC----CCCCeecccCccCCCC---
Q 039656 277 LPRVLSGLSSLKWMELRDCDLIK-IPQDIGSLSSLEWFVLSGNN-FEH-LPASIKKL----SRLTYLNLSGCNMLRS--- 346 (660)
Q Consensus 277 lp~~l~~L~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~-l~~-lp~~i~~l----~~L~~L~L~~c~~l~~--- 346 (660)
+|.....-..|+.|+|++|.++. --..+..+++|+.|+|++|. ++. --..+..+ ++|++|+|++|..++.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 45433333579999999999876 22456889999999999874 662 11235544 4799999999986643
Q ss_pred --CCCCCcCCcEEecccCcCCcc
Q 039656 347 --LPELPIRLICLDARNCERLRT 367 (660)
Q Consensus 347 --lp~~~~~L~~L~l~~c~~L~~ 367 (660)
+.. .++|++|++.+|+.++.
T Consensus 133 ~~L~~-~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHH-FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGG-CTTCCEEEEESCTTCCC
T ss_pred HHHhc-CCCCCEEECCCCCCCCc
Confidence 332 58999999999988774
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.89 E-value=0.0067 Score=64.34 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=34.0
Q ss_pred cCcccccCCCCccEEEEecCCCCCcccCCcceecCCccccCCcCceEEEeeCCCCCCCCCCC--CCCCceEEeCCC
Q 039656 158 LACGTFTSMSNLRLLKFYMPNRDGFSIMSSKVHLDQGLEYLPEELRYLHWYGYPLRTLPSNF--DPENLIALNLPY 231 (660)
Q Consensus 158 l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~lp~~l~~l~~~Lr~L~l~~~~l~~lP~~~--~l~~L~~L~L~~ 231 (660)
+...+|.++++|+.+.+.++. ..++...+.-..+|+.+.+..+ ++.++... +...|+.+.+..
T Consensus 153 i~~~aF~~c~~L~~i~l~~~~----------~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDSM----------ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTC----------CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cchhhhcccCCCcEEecCCcc----------ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 445678888888888875432 2344333332226666666544 44444332 455555555544
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.65 E-value=0.011 Score=62.68 Aligned_cols=78 Identities=21% Similarity=0.200 Sum_probs=38.2
Q ss_pred ccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccceecch-hhhcCCCCCe
Q 039656 258 IADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLTY 335 (660)
Q Consensus 258 i~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~ 335 (660)
+..+..|+.+.+....+. ...+..+.+|+.+.+.++ +..+++ .|.++.+|+.++|.. .++.++. .+.++++|+.
T Consensus 272 F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~ 347 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSN 347 (394)
T ss_dssp TTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCE
T ss_pred cccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCE
Confidence 444455555544433211 122445556666666442 444332 455566666666643 2554432 3455566666
Q ss_pred eccc
Q 039656 336 LNLS 339 (660)
Q Consensus 336 L~L~ 339 (660)
+.+.
T Consensus 348 i~lp 351 (394)
T 4fs7_A 348 INFP 351 (394)
T ss_dssp ECCC
T ss_pred EEEC
Confidence 6554
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.50 E-value=0.043 Score=57.99 Aligned_cols=21 Identities=10% Similarity=0.225 Sum_probs=16.5
Q ss_pred ecCcccccCCCCccEEEEecC
Q 039656 157 HLACGTFTSMSNLRLLKFYMP 177 (660)
Q Consensus 157 ~l~~~~f~~l~~Lr~L~l~~n 177 (660)
.+...+|.++++|+.+.+..+
T Consensus 77 ~Ig~~AF~~C~~L~~i~~~~n 97 (394)
T 4gt6_A 77 EIGSNAFYNCTSLKRVTIQDN 97 (394)
T ss_dssp EECTTTTTTCTTCCEEEEGGG
T ss_pred EEhHHHhhCCccCceEeecCC
Confidence 456778889999998888655
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.21 E-value=0.1 Score=54.62 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=15.9
Q ss_pred eecCcccccCCCCccEEEEec
Q 039656 156 IHLACGTFTSMSNLRLLKFYM 176 (660)
Q Consensus 156 ~~l~~~~f~~l~~Lr~L~l~~ 176 (660)
..+...+|.++.+|+.+.|..
T Consensus 58 t~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 58 TSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp EEECTTTTTTCTTCCEEEECT
T ss_pred cChHHHHhhCCCCCCEEEeCC
Confidence 346677888888888888854
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.86 E-value=0.21 Score=52.61 Aligned_cols=81 Identities=10% Similarity=0.156 Sum_probs=48.4
Q ss_pred cccCCCCCcEEEecCCCCcCCCCCCCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccceecch-hhhcCCCCC
Q 039656 257 SIADLNKLEDLSFFGCKASVLPRVLSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRLT 334 (660)
Q Consensus 257 si~~L~~L~~L~l~~~~~~~lp~~l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~ 334 (660)
.+.++.+|+.+.+......--...+.++++|+.+.+. +.+..++. .|.++.+|+.+.|..+ ++.+.. .+.++++|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 3455677777776554322223345667777777775 34555543 4666777777777543 555543 456677777
Q ss_pred eeccc
Q 039656 335 YLNLS 339 (660)
Q Consensus 335 ~L~L~ 339 (660)
.+.|.
T Consensus 338 ~i~ip 342 (394)
T 4gt6_A 338 RIAIP 342 (394)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.35 E-value=0.017 Score=51.08 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=31.4
Q ss_pred EEEecCCCCc--CCCCCCCCCCCCCEEEccCCCCCCCCcc-cCCCcccCccccccccce
Q 039656 266 DLSFFGCKAS--VLPRVLSGLSSLKWMELRDCDLIKIPQD-IGSLSSLEWFVLSGNNFE 321 (660)
Q Consensus 266 ~L~l~~~~~~--~lp~~l~~L~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~ 321 (660)
.++.+++.+. .+|..+. ++|+.|+|++|+|+.+|.. |..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5555666655 6664322 3566666666666665543 455666666666666554
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.29 E-value=0.14 Score=53.47 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=50.8
Q ss_pred cccCCCCCcEEEecCCCCcCCC-CCCCCCCCCCEEEccCCCCCCCCc-ccCCCcccCccccccccceecch-hhhcCCCC
Q 039656 257 SIADLNKLEDLSFFGCKASVLP-RVLSGLSSLKWMELRDCDLIKIPQ-DIGSLSSLEWFVLSGNNFEHLPA-SIKKLSRL 333 (660)
Q Consensus 257 si~~L~~L~~L~l~~~~~~~lp-~~l~~L~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L 333 (660)
.+.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+.++.+..+++ .|.++.+|+.+.|.. +++.+.. .+.++++|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCC
Confidence 3456677777777543 33333 346677788888887777777543 577777788777753 3555543 35566666
Q ss_pred Ceeccc
Q 039656 334 TYLNLS 339 (660)
Q Consensus 334 ~~L~L~ 339 (660)
+.+.+.
T Consensus 336 ~~i~ip 341 (379)
T 4h09_A 336 STISYP 341 (379)
T ss_dssp CCCCCC
T ss_pred CEEEEC
Confidence 666553
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.64 E-value=0.043 Score=48.34 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=23.6
Q ss_pred EEEccCCCCC--CCCcccCCCcccCccccccccceecchh-hhcCCCCCeecccCcc
Q 039656 289 WMELRDCDLI--KIPQDIGSLSSLEWFVLSGNNFEHLPAS-IKKLSRLTYLNLSGCN 342 (660)
Q Consensus 289 ~L~Ls~~~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 342 (660)
.++.++++++ .+|..+. ++|+.|+|++|+|+.+|.. +..+++|+.|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444444444 4443322 2344555555555544433 2444455555554443
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.62 E-value=0.0046 Score=58.77 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=24.2
Q ss_pred CCCCEEEccCCCCCC-----CCcccCCCcccCccccccccce-----ecchhhhcCCCCCeecccC
Q 039656 285 SSLKWMELRDCDLIK-----IPQDIGSLSSLEWFVLSGNNFE-----HLPASIKKLSRLTYLNLSG 340 (660)
Q Consensus 285 ~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~ 340 (660)
+.|+.|+|++|.+.. +-+.+..-+.|+.|+|+.|.|. .+-..+..-+.|+.|+|++
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 344444444444432 2222333344555555555444 1222333334455555553
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.10 E-value=0.023 Score=53.88 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=26.5
Q ss_pred ccCCCCCcEEEecCCCCcC-----CCCCCCCCCCCCEEEccCCCCCC-----CCcccCCCcccCcccccc
Q 039656 258 IADLNKLEDLSFFGCKASV-----LPRVLSGLSSLKWMELRDCDLIK-----IPQDIGSLSSLEWFVLSG 317 (660)
Q Consensus 258 i~~L~~L~~L~l~~~~~~~-----lp~~l~~L~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~ 317 (660)
+..-+.|+.|+|++|.+.. +...+..=+.|++|+|++|.+.. +-+.+..-+.|+.|+|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 3344455555555555432 11112222445555555555543 223344444455555543
Done!