BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039657
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 20/101 (19%)
Query: 172 ILLAAKIGVTEMVDRFLKS----------------YPAVIQELNTSEKNLVLLTFEKKNA 215
++LAA++ + MV+ + + + A + NT N++L+ ++A
Sbjct: 122 LILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN--NTEAVNILLMHHANRDA 179
Query: 216 QQSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
Q + ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 180 QDD-KDETPLFLAAREGSYEASKALLDNF-ANREITDHMDR 218
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQELNTS-----------EKNLVLLTFEKKNAQQS 218
++LAA++ V M++ + S+ V + +L S + +VLL Q+
Sbjct: 129 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 188
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
R+ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 189 NREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDR 225
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQELNTS-----------EKNLVLLTFEKKNAQQS 218
++LAA++ V M++ + S+ V + +L S + +VLL Q+
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
R+ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDR 224
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQELNTS-----------EKNLVLLTFEKKNAQQS 218
++LAA++ V M++ + S+ V + +L S + +VLL Q+
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
R+ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDR 224
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQELNTS-----------EKNLVLLTFEKKNAQQS 218
++LAA++ V M++ + S+ V + +L S + +VLL Q+
Sbjct: 96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 155
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
R+ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 156 NREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDR 192
>pdb|1VBJ|A Chain A, The Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Brucei
pdb|1VBJ|B Chain B, The Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Brucei
Length = 281
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 55 PNYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDN 114
P + K+ M+ VLG G+W++ E + WAI+ + A++YK E++
Sbjct: 3 PEFMALTQSLKLSNGVMMPVLGFGMWKLQDGNEAETATMWAIKSGYRHIDTAAIYKNEES 62
Query: 115 GPKRRNSGPKEDEEAFSVSETLPVPDTG 142
+ S EE F V+ L D G
Sbjct: 63 AGRAIASCGVPREELF-VTTKLWNSDQG 89
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQELNTS-----------EKNLVLLTFEKKNAQQS 218
++LAA++ + M++ + S+ V + +L S + +VLL Q+
Sbjct: 19 LILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 78
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
++ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 79 NKEETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDR 115
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQELNTS-----------EKNLVLLTFEKKNAQQS 218
++LAA++ + M++ + S+ V + +L S + +VLL Q+
Sbjct: 93 LILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 152
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
++ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 153 NKEETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDR 189
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 2 VNSVNENGLTPLHILASK 19
VN+VN+NG TPLH ASK
Sbjct: 99 VNAVNQNGCTPLHYAASK 116
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 2 VNSVNENGLTPLHILASK 19
VN+VN+NG TPLH ASK
Sbjct: 100 VNAVNQNGCTPLHYAASK 117
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 2 VNSVNENGLTPLHILASK 19
VN+VN+NG TPLH ASK
Sbjct: 99 VNAVNQNGCTPLHYAASK 116
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 2 VNSVNENGLTPLHILASK 19
VN+VN+NG TPLH ASK
Sbjct: 99 VNAVNQNGCTPLHYAASK 116
>pdb|3N8H|A Chain A, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Franc Tularensis
pdb|3N8H|B Chain B, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Franc Tularensis
pdb|3QTT|A Chain A, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Francisella Tularensis Complexed With Beta-Gamma Atp And
Beta-Alanine
pdb|3QTT|B Chain B, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Francisella Tularensis Complexed With Beta-Gamma Atp And
Beta-Alanine
Length = 264
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 143 EISHQNKSTNHKKIENGSAQSGT-----EKMDNKILLAAKIGVTEMVDRFLK 189
EI Q+ +N +++ N +G +K++N+I LA IG ++D FLK
Sbjct: 207 EILRQDDFSNLEELTNKINSTGAKLQYIQKLNNRIFLAFYIGKVRLIDNFLK 258
>pdb|4FZI|A Chain A, Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Cruzi
pdb|4FZI|B Chain B, Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Cruzi
pdb|4GIE|A Chain A, Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Cruzi Bound To Nadp
Length = 290
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 56 NYATCVLLFKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDN- 114
NY L V M LGLG+WR E WAI+ + A +Y E
Sbjct: 12 NYNCVTLHNSVRMPQ----LGLGVWRAQDGAETANAVRWAIEAGYRHIDTAYIYSNERGV 67
Query: 115 GPKRRNSG-PKED 126
G R SG P+E+
Sbjct: 68 GQGIRESGVPREE 80
>pdb|1M6K|A Chain A, Structure Of The Oxa-1 Class D Beta-Lactamase
pdb|1M6K|B Chain B, Structure Of The Oxa-1 Class D Beta-Lactamase
pdb|3ISG|A Chain A, Structure Of The Class D Beta-Lactamase Oxa-1 In Complex
With Doripenem
pdb|3ISG|B Chain B, Structure Of The Class D Beta-Lactamase Oxa-1 In Complex
With Doripenem
Length = 251
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 15/129 (11%)
Query: 76 GLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYED------------NGPKRRNSGP 123
G+ IW NH T K + V E+ Q L K ++ +G K RN+G
Sbjct: 76 GMEIWNSNH-TPKTWMQFSVVWVSQEITQKIGLNKIKNYLKDFDYGNQDFSGDKERNNGL 134
Query: 124 KED--EEAFSVSETLPVPDTGEISHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVT 181
E E + +S + +I + N + IEN + +DN L K G
Sbjct: 135 TEAWLESSLKISPEEQIQFLRKIINHNLPVKNSAIENTIENMYLQDLDNSTKLYGKTGAG 194
Query: 182 EMVDRFLKS 190
+R L++
Sbjct: 195 FTANRTLQN 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,129,861
Number of Sequences: 62578
Number of extensions: 554884
Number of successful extensions: 1345
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1312
Number of HSP's gapped (non-prelim): 36
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)