BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039657
(507 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana
GN=At3g12360 PE=2 SV=1
Length = 590
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 135/331 (40%), Gaps = 76/331 (22%)
Query: 181 TEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQI 240
T +V ++ + V+ +L + NL L + N + + + +AAR G E+++ +
Sbjct: 200 TPLVSAAMRGHTEVVNQLLSKAGNL--LEISRSNNKNA------LHLAARQGHVEVIKAL 251
Query: 241 LDTFPA-----NQYLQALLNRKILGES-------------IFRQVDSQGNSALHLAAK-- 280
L P ++ Q L+ + G+S I Q D N+ALH+A +
Sbjct: 252 LSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKK 311
Query: 281 -------------------FGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDN 321
DH+ L L + E ++K+ + R R N+
Sbjct: 312 RAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEE---SSYIKECLARSGALRANEL 368
Query: 322 GK-------TPKEVFTETH-----------------KDLVKEGKEWLPKTSESCSVVAAL 357
+ T ++ + H K+L K +E + + S +VVA L
Sbjct: 369 NQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVL 428
Query: 358 IATVAFATSATVPGGVDQESGKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILTSRY 417
ATVAFA TVPGG D G + F IF I + +AL S+ +V +T++
Sbjct: 429 FATVAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGET 487
Query: 418 QEKDFVKDLPRKLLLGLTTLFTSIAAILISF 448
+ + V ++ KL+ L ++ TS+A + S+
Sbjct: 488 KAEKRVVEVINKLMW-LASMCTSVAFLASSY 517
>sp|Q9R172|NOTC3_RAT Neurogenic locus notch homolog protein 3 OS=Rattus norvegicus
GN=Notch3 PE=2 SV=2
Length = 2319
Score = 43.1 bits (100), Expect = 0.005, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQEL-----------NTSEKNLVLLTFEKKNAQQS 218
++LAA++ V MV+ + S+ V + EL N E L LL Q
Sbjct: 1912 LILAARLAVEGMVEELIASHADVNAVDELGKSALHWAAAVNNVEATLALLKNGANKDMQD 1971
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
++ETP+ +AAR G E + +LD F AN+ + L+R
Sbjct: 1972 SKEETPLFLAAREGSYEAAKLLLDHF-ANREITDHLDR 2008
>sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3 OS=Homo sapiens GN=NOTCH3
PE=1 SV=2
Length = 2321
Score = 43.1 bits (100), Expect = 0.005, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQEL-----------NTSEKNLVLLTFEKKNAQQS 218
++LAA++ V MV+ + S+ V + EL N E L LL Q
Sbjct: 1910 LILAARLAVEGMVEELIASHADVNAVDELGKSALHWAAAVNNVEATLALLKNGANKDMQD 1969
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
++ETP+ +AAR G E + +LD F AN+ + L+R
Sbjct: 1970 SKEETPLFLAAREGSYEAAKLLLDHF-ANREITDHLDR 2006
>sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 OS=Mus musculus GN=Notch3
PE=1 SV=1
Length = 2318
Score = 40.8 bits (94), Expect = 0.028, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQEL-----------NTSEKNLVLLTFEKKNAQQS 218
++LAA++ V MV+ + S+ V + EL N E L LL Q
Sbjct: 1911 LILAARLAVEGMVEELIASHADVNAVDELGKSALHWAAAVNNVEATLALLKNGANKDMQD 1970
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
++ETP+ +AAR G E + +LD AN+ + L+R
Sbjct: 1971 SKEETPLFLAAREGSYEAAKLLLDHL-ANREITDHLDR 2007
>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana
GN=At5g02620 PE=1 SV=1
Length = 524
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 84/217 (38%), Gaps = 35/217 (16%)
Query: 171 KILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNA---QQSGRKETPMLI 227
K L+ K G+ VD+ K A+ + +V + E + + TP+ I
Sbjct: 176 KKLIEKKAGMVTRVDK--KGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHI 233
Query: 228 AARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHRPW 287
A R E+V+ +L ++ V+ G +AL +A K G H
Sbjct: 234 AVRKNRAEIVQTVLKYCEVSRV----------------AVNKSGETALDIAEKTGLHEIV 277
Query: 288 -LLPGAALQMQWEIKWYQFVKKS------------MPRHFFTRFNDNGKTPKEVFTETHK 334
LL +Q IK + V+ S + T+ G+T +E+ K
Sbjct: 278 PLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREI-QGIAK 336
Query: 335 DLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPG 371
+ K E L S ++VA LIATVAFA VPG
Sbjct: 337 RVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPG 373
>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana
GN=At2g01680 PE=1 SV=1
Length = 532
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 321 NGKTPKEVFTETHKDLVKEGKEWLPKTSESCSVVAALIATVAFATSATVPGGVDQES--- 377
N KT + V + K+L K +E + T+ S +VVA L A++AF +PG E
Sbjct: 325 NEKTNRRV-SGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHV 383
Query: 378 GKPIFENEPVFNIFSISSLVALCFSVTALVFFLTILT--SRYQEKDFVKDLPRKLL-LGL 434
G+ F +F + + +L S+ +V +T++ +R Q+K V + KL+
Sbjct: 384 GQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKK--VVSVVNKLMWAAC 441
Query: 435 TTLFTSIAAILISFCSGHSFMLKDEMRSAAYPIYAATCLPMTFFALAQ 482
F + AI + + + + PI T M +F Q
Sbjct: 442 ACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFRQ 489
>sp|P07207|NOTCH_DROME Neurogenic locus Notch protein OS=Drosophila melanogaster GN=N PE=1
SV=3
Length = 2703
Score = 38.5 bits (88), Expect = 0.12, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 28/130 (21%)
Query: 143 EISHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKS------------ 190
+I +N++TN N GT ++LAA++ + MV+ + +
Sbjct: 2001 QILLRNRATNL----NARMHDGT----TPLILAARLAIEGMVEDLITADADINAADNSGK 2052
Query: 191 ----YPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILDTFPA 246
+ A + NT N++L+ ++AQ + ETP+ +AAR G E + +LD F A
Sbjct: 2053 TALHWAAAVN--NTEAVNILLMHHANRDAQDD-KDETPLFLAAREGSYEACKALLDNF-A 2108
Query: 247 NQYLQALLNR 256
N+ + ++R
Sbjct: 2109 NREITDHMDR 2118
>sp|A6NHY2|AKD1B_HUMAN Ankyrin repeat and death domain-containing protein 1B OS=Homo
sapiens GN=ANKDD1B PE=4 SV=2
Length = 467
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 37/109 (33%)
Query: 217 QSGRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALH 276
+ GRK P L+AA G EM+E++ TF LN + D GN+ALH
Sbjct: 106 EKGRK--PFLLAAERGHVEMIEKL--TF---------LNLHT------SEKDKGGNTALH 146
Query: 277 LAAKFGDHRPWLLPGAALQMQWEIKWYQFVKKSMPRHFFTRFNDNGKTP 325
LAAK G H P + L QW+ N+NG+TP
Sbjct: 147 LAAKHG-HSPAV---QVLLAQWQD--------------INEMNENGETP 177
>sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2 OS=Rattus norvegicus
GN=Notch2 PE=1 SV=1
Length = 2471
Score = 36.2 bits (82), Expect = 0.58, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFL-------------KSYPAVIQELNTSEKNLVLLTFEKKNAQQS 218
++LAA++ V MV + KS +N E L+LL Q
Sbjct: 1948 LILAARLAVEGMVAELINCQADVNAVDDHGKSALHWAAAVNNVEATLLLLKNGANRDMQD 2007
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
++ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 2008 NKEETPLFLAAREGSYEAAKILLDHF-ANRDITDHMDR 2044
>sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 OS=Mus musculus GN=Notch2
PE=1 SV=1
Length = 2470
Score = 36.2 bits (82), Expect = 0.58, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFL-------------KSYPAVIQELNTSEKNLVLLTFEKKNAQQS 218
++LAA++ V MV + KS +N E L+LL Q
Sbjct: 1946 LILAARLAVEGMVAELINCQADVNAVDDHGKSALHWAAAVNNVEATLLLLKNGANRDMQD 2005
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
++ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 2006 NKEETPLFLAAREGSYEAAKILLDHF-ANRDITDHMDR 2042
>sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2
PE=1 SV=3
Length = 2471
Score = 36.2 bits (82), Expect = 0.58, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFL-------------KSYPAVIQELNTSEKNLVLLTFEKKNAQQS 218
++LAA++ V MV + KS +N E L+LL Q
Sbjct: 1948 LILAARLAVEGMVAELINCQADVNAVDDHGKSALHWAAAVNNVEATLLLLKNGANRDMQD 2007
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
++ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 2008 NKEETPLFLAAREGSYEAAKILLDHF-ANRDITDHMDR 2044
>sp|A0RQU0|SYR_CAMFF Arginine--tRNA ligase OS=Campylobacter fetus subsp. fetus (strain
82-40) GN=argS PE=3 SV=1
Length = 531
Score = 35.8 bits (81), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 221 KETPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAK 280
K++P +IA+++ + ++ D F N Y LN K+ GE + +S N+AL LA
Sbjct: 43 KKSPAIIASQLALKFENHELFDVFSINGY----LNFKLKGEFL----NSLANNALSLAES 94
Query: 281 FGDHRP 286
FG +P
Sbjct: 95 FGSKKP 100
>sp|O95573|ACSL3_HUMAN Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1
SV=3
Length = 720
Score = 35.4 bits (80), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 142 GEISHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTS 201
G S Q + KI+ GS G M L+AA V E++DR K+ + E+++
Sbjct: 350 GYSSPQTLADQSSKIKKGS--KGDTSMLKPTLMAA---VPEIMDRIYKNVMNKVSEMSSF 404
Query: 202 EKNLVLLTFEKKNAQQSGRKETPM 225
++NL +L + K Q S + TP+
Sbjct: 405 QRNLFILAYNYKMEQISKGRNTPL 428
>sp|Q5R668|ACSL3_PONAB Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2
SV=2
Length = 720
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 142 GEISHQNKSTNHKKIENGSAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTS 201
G S Q + KI+ GS G M L+AA V E++DR K+ + E+++
Sbjct: 350 GYSSPQTLADQSSKIKKGS--KGDTSMLKPTLMAA---VPEIMDRIYKNVMNKVSEMSSF 404
Query: 202 EKNLVLLTFEKKNAQQSGRKETPM 225
++NL +L + K Q S + TP+
Sbjct: 405 QRNLFILAYNYKMEQISKGRNTPL 428
>sp|A5UIY9|CAPP_HAEIG Phosphoenolpyruvate carboxylase OS=Haemophilus influenzae (strain
PittGG) GN=ppc PE=3 SV=1
Length = 879
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 228 AARMGVTEMVEQILDTFPANQYLQALLNRKI--LGESIFRQVDSQGNSALHLA--AKFGD 283
+ R+G+ EMV DT+ + QY Q L+ +++ LGE++ +Q++ + L L+ +K
Sbjct: 760 STRIGMLEMVFSKSDTWLSQQYDQRLVKKELWYLGENLRKQLEDDIQTVLSLSHQSKLMS 819
Query: 284 HRPWLLPGAALQ 295
PW+ AL+
Sbjct: 820 DLPWIADSIALR 831
>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio
GN=kidins220 PE=2 SV=2
Length = 1672
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 23/89 (25%)
Query: 156 IENGSA--QSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKK 213
+ENG+ Q G M +++A K G TE+V LK P V N ++K+
Sbjct: 191 LENGADVDQEGANSM-TALIVAVKGGYTEVVKELLKRNPNV----NMTDKD--------- 236
Query: 214 NAQQSGRKETPMLIAARMGVTEMVEQILD 242
T ++IAA+ G TE+V+ +LD
Sbjct: 237 -------GNTALMIAAKEGYTEIVQDLLD 258
>sp|Q812A3|ANR23_MOUSE Ankyrin repeat domain-containing protein 23 OS=Mus musculus
GN=Ankrd23 PE=2 SV=1
Length = 306
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 27/126 (21%)
Query: 164 GTEKMDNKILLA-AKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKE 222
G ++ NK+L A A I V +++DR + L+ +L + AQ + + +
Sbjct: 156 GHRQLVNKLLAAGAAIEVRDLLDRTPVFWACRGGHLD------ILKRLLNQGAQVNAQDK 209
Query: 223 ---TPMLIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAA 279
TP+ +A RMG ++ +E +++ G I Q D +G++ALH A
Sbjct: 210 IWSTPLHVAVRMGHSDCLEHLIEC----------------GAHINAQ-DKEGDTALHEAV 252
Query: 280 KFGDHR 285
++G H+
Sbjct: 253 RYGHHK 258
>sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1
PE=1 SV=4
Length = 2555
Score = 34.7 bits (78), Expect = 2.0, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQELNTSE-----------KNLVLLTFEKKNAQQS 218
++LAA++ V M++ + S+ V + +L S +VLL Q+
Sbjct: 1999 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 2058
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
R+ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 2059 NREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDR 2095
>sp|Q2T9K6|FEM1C_XENLA Protein fem-1 homolog C OS=Xenopus laevis GN=fem1c PE=2 SV=1
Length = 617
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 17/89 (19%)
Query: 175 AAKIGVTEMVDRFLKSYPAVIQELNTSEKNLVLLTFEKKNAQQSGRKETPMLIAARMGVT 234
AA+ G ++ + L+ N ++ ++VLL EK N TP+L+AAR G
Sbjct: 10 AARDGKLRLLSKLLE---------NKAKDDVVLLMSEKTNGA------TPLLMAARYGHL 54
Query: 235 EMVEQILDTFPANQYLQALLNRKILGESI 263
+MV+ +LD A+ + +N GE+I
Sbjct: 55 DMVDYLLDQCSASVEIGGSVNFD--GETI 81
>sp|P43920|CAPP_HAEIN Phosphoenolpyruvate carboxylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ppc PE=3 SV=1
Length = 879
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 228 AARMGVTEMVEQILDTFPANQYLQALLNRKI--LGESIFRQVDSQGNSALHLA--AKFGD 283
+ R+G+ EMV DT+ + QY Q L+ +++ LGE++ +Q++ + L L+ ++
Sbjct: 760 STRIGMLEMVFSKSDTWLSQQYDQRLVKKELWYLGENLRKQLEDDIQTVLSLSHQSELMS 819
Query: 284 HRPWLLPGAALQ 295
PW+ AL+
Sbjct: 820 DLPWIADSIALR 831
>sp|Q4QL71|CAPP_HAEI8 Phosphoenolpyruvate carboxylase OS=Haemophilus influenzae (strain
86-028NP) GN=ppc PE=3 SV=1
Length = 879
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 228 AARMGVTEMVEQILDTFPANQYLQALLNRKI--LGESIFRQVDSQGNSALHLA--AKFGD 283
+ R+G+ EMV DT+ + QY Q L+ +++ LGE++ +Q++ + L L+ ++
Sbjct: 760 STRIGMLEMVFSKSDTWLSQQYDQRLVKKELWYLGENLRKQLEDDIQTVLSLSHQSELMS 819
Query: 284 HRPWLLPGAALQ 295
PW+ AL+
Sbjct: 820 DLPWIADSIALR 831
>sp|Q9GV41|PGFS_TRYBB Prostaglandin F synthase OS=Trypanosoma brucei brucei PE=1 SV=1
Length = 276
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 64 FKVMMKAMLIVLGLGIWRINHITEKKERHTWAIQVMCELVQHASLYKYEDNGPKRRNSGP 123
K+ M+ VLG G+W++ E + WAI+ + A++YK E++ + S
Sbjct: 7 LKLSNGVMMPVLGFGMWKLQDGNEAETATMWAIKSGYRHIDTAAIYKNEESAGRAIASCG 66
Query: 124 KEDEEAFSVSETLPVPDTG 142
EE F V+ L D G
Sbjct: 67 VPREELF-VTTKLWNSDQG 84
>sp|A5UCN0|CAPP_HAEIE Phosphoenolpyruvate carboxylase OS=Haemophilus influenzae (strain
PittEE) GN=ppc PE=3 SV=1
Length = 879
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 228 AARMGVTEMVEQILDTFPANQYLQALLNRKI--LGESIFRQVDSQGNSALHLA--AKFGD 283
+ R+G+ EMV DT+ + QY Q L+ +++ LGE++ +Q++ + L L+ ++
Sbjct: 760 STRIGMLEMVFSKSDTWLSQQYDQRLVKKELWYLGENLRKQLEDDIQTVLSLSHQSELMS 819
Query: 284 HRPWLLPGAALQ 295
PW+ AL+
Sbjct: 820 DLPWIADSIALR 831
>sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1 OS=Rattus norvegicus
GN=Notch1 PE=2 SV=2
Length = 2531
Score = 33.1 bits (74), Expect = 5.1, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQELNTSE-----------KNLVLLTFEKKNAQQS 218
++LAA++ V M++ + S+ V + +L S +VLL Q+
Sbjct: 1989 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 2048
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
++ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 2049 NKEETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDR 2085
>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 OS=Mus musculus GN=Notch1
PE=1 SV=3
Length = 2531
Score = 33.1 bits (74), Expect = 5.2, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 14/98 (14%)
Query: 172 ILLAAKIGVTEMVDRFLKSYPAV--IQELNTSE-----------KNLVLLTFEKKNAQQS 218
++LAA++ V M++ + S+ V + +L S +VLL Q+
Sbjct: 1989 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 2048
Query: 219 GRKETPMLIAARMGVTEMVEQILDTFPANQYLQALLNR 256
++ETP+ +AAR G E + +LD F AN+ + ++R
Sbjct: 2049 NKEETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDR 2085
>sp|Q8KA72|METR_BUCAP HTH-type transcriptional regulator MetR OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=metR PE=3 SV=1
Length = 312
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 226 LIAARMGVTEMVEQILDTFPANQYLQALLNRKILGESIFRQVDSQGNSALHLAAKFGDHR 285
++AA+MG+T + ++DTF Q L+ K LG+ I+++ L+ A + GD +
Sbjct: 228 MVAAKMGITALPHWVVDTFEK----QGLVVTKKLGDGIWKR--------LYAAIRDGDQK 275
Query: 286 PWLLPGAALQMQWEIKWY-QFVKKSMPRHFF 315
++ ++ + + +F++ + HFF
Sbjct: 276 ELIIKNFIYAIRLHVCTHLKFIRDTQKPHFF 306
>sp|P31695|NOTC4_MOUSE Neurogenic locus notch homolog protein 4 OS=Mus musculus GN=Notch4
PE=1 SV=2
Length = 1964
Score = 32.3 bits (72), Expect = 8.5, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 160 SAQSGTEKMDNKILLAAKIGVTEMVDRFLKSYPAVIQELNTSEKNL-------------- 205
S + TE ++LAA++ V ++V+ + + V + L
Sbjct: 1688 SVDARTEDGTTPLMLAARLAVEDLVEELIAARADVGARDKRGKTALHWAAAVNNARAARS 1747
Query: 206 VLLTFEKKNAQQSGRKETPMLIAARMGVTEMVEQILD 242
+L K+AQ S R++TP+ +AAR G E+ + +L+
Sbjct: 1748 LLQAGADKDAQDS-REQTPLFLAAREGAVEVAQLLLE 1783
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,249,239
Number of Sequences: 539616
Number of extensions: 7386863
Number of successful extensions: 19729
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 19680
Number of HSP's gapped (non-prelim): 74
length of query: 507
length of database: 191,569,459
effective HSP length: 122
effective length of query: 385
effective length of database: 125,736,307
effective search space: 48408478195
effective search space used: 48408478195
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)