BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039658
         (198 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens
           GN=EXD2 PE=1 SV=2
          Length = 621

 Score = 40.0 bits (92), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 21/155 (13%)

Query: 41  VVGFDVKF-NSQTRIAEMLIL---SAANLCLAIQLCRL----SRIPESVTNFLADRTICF 92
           V+G D ++ N + + + + +L   S + LC+ ++L +L      +P ++ + LAD TI  
Sbjct: 104 VLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILK 163

Query: 93  VGFGVDKKTASIHGKTGY-PRNCDTGIDLGHLAARVLKKPKLIGLT--GIAELAKEVGID 149
           VG G  +  + +    G   R C   +DL +LA R        GL+   +AE      +D
Sbjct: 164 VGVGCSEDASKLLQDYGLVVRGC---LDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLD 220

Query: 150 HNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEAR 184
            + L       +   NW+A   T+ QV++A  +A+
Sbjct: 221 KSLL-------LRCSNWDAETLTEDQVIYAARDAQ 248


>sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX
           PE=1 SV=1
          Length = 288

 Score = 35.4 bits (80), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 29/175 (16%)

Query: 23  VIDKKISELSGMLFKMRRVVGFDVKFNSQTR-------IAEMLILSAANLCLAIQLCRLS 75
           V+D K  E SG+ F     VG D+++    R       +A + I   +N C  + +   S
Sbjct: 117 VLDTKRDE-SGIAF-----VGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFH-S 169

Query: 76  RIPESVTNFLADRTICFVGFGVDKKTASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIG 135
            IP+S+ + + D T+  VG G+D  +  +    G   +     DL  LA + +   K  G
Sbjct: 170 GIPQSLQHLIEDSTLVKVGIGIDGDSVKLFHDYGV--SIKDVEDLSDLANQKIGGDKKWG 227

Query: 136 LTGIAELAKEVGIDHNSLSNKEI---EAVTPPNWNAWVFTDKQVLHAVEEARGCY 187
           L  + E          +L  KE+     +   NW  +  + +Q+ +A  +A   +
Sbjct: 228 LASLTE----------TLVCKELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASW 272


>sp|Q5UQM4|YR431_MIMIV Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus
           GN=MIMI_R431 PE=4 SV=1
          Length = 399

 Score = 34.7 bits (78), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 32/169 (18%), Positives = 72/169 (42%), Gaps = 14/169 (8%)

Query: 39  RRVVGFDVK--FNSQTRIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFG 96
           + ++G D +   + ++    ++ LS +   + IQ+ +++ +P+++     D +I  VG  
Sbjct: 134 QEIIGLDTETLISGKSEKISIIQLSTSKHNIIIQVNQMNTLPQNLNKVFFDESIIKVGVA 193

Query: 97  VDKKTASIHGKTGYPRNCDTGIDLGHLAARV-------LKKPKLIGLTGIAELAKEVGID 149
           +D     +             +DL  L  +        +   + IGL  +A    ++ I+
Sbjct: 194 IDIDAKKLLQYFPTINQIKKTLDLSDLFKQTNFTKHISINPKESIGLKILAAHVLDLYIE 253

Query: 150 HNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLLN 198
                NK    +   NWN  V T  QV +A+ ++    ++ ++L  + N
Sbjct: 254 -----NKGDSEIKKSNWNNPVLTSDQVKYAITDSYLSLMIYNELQLMTN 297


>sp|B6IRJ4|PSUG_RHOCS Pseudouridine-5'-phosphate glycosidase OS=Rhodospirillum centenum
           (strain ATCC 51521 / SW) GN=psuG PE=3 SV=1
          Length = 320

 Score = 33.1 bits (74), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 83  NFLADRTICFVGFGVDKKTASIHGKTGYPRN--CDTGIDLGHLAARVLKKPKLIGLTG 138
            +L  R +  VGFG D   A  H  +G P +  CDT  D    AARVL     +GL G
Sbjct: 168 EYLETRGVPVVGFGTDAFPAFYHRDSGLPVDGRCDTPED----AARVLNAKWRLGLAG 221


>sp|B7KL75|GLMM_CYAP7 Phosphoglucosamine mutase OS=Cyanothece sp. (strain PCC 7424)
           GN=glmM PE=3 SV=1
          Length = 487

 Score = 30.0 bits (66), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 19/67 (28%)

Query: 63  ANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKTASIHGKTGYPRNCDTGIDLGH 122
           ANL +  QLC L + P                FG D     I GK G   N    +DLG 
Sbjct: 21  ANLGVVNQLCPLPKTPL---------------FGTD----GIRGKVGELLNASLALDLGF 61

Query: 123 LAARVLK 129
            AA+VLK
Sbjct: 62  CAAQVLK 68


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,220,685
Number of Sequences: 539616
Number of extensions: 2625111
Number of successful extensions: 5769
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5768
Number of HSP's gapped (non-prelim): 15
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)