Query 039658
Match_columns 198
No_of_seqs 136 out of 1062
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 20:37:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk0_A Hypothetical protein; h 100.0 1.5E-42 5E-47 281.2 10.4 167 17-195 23-205 (206)
2 2e6m_A Werner syndrome ATP-dep 100.0 8.5E-34 2.9E-38 228.9 16.3 178 6-197 11-195 (208)
3 3saf_A Exosome component 10; e 100.0 9.9E-30 3.4E-34 225.6 18.0 165 14-197 109-277 (428)
4 2hbj_A Exosome complex exonucl 100.0 6.8E-28 2.3E-32 213.1 17.8 163 16-197 88-254 (410)
5 1yt3_A Ribonuclease D, RNAse D 100.0 3.2E-27 1.1E-31 206.4 17.4 163 16-197 4-170 (375)
6 3cym_A Uncharacterized protein 99.9 2.6E-23 9E-28 185.2 15.1 160 16-197 19-187 (440)
7 2kfn_A Klenow fragment of DNA 99.7 2.5E-15 8.6E-20 138.4 17.5 162 17-197 9-193 (605)
8 3pv8_A DNA polymerase I; DNA p 99.4 1.4E-12 4.6E-17 119.9 9.5 144 40-197 30-181 (592)
9 1x9m_A DNA polymerase; DNA plo 99.3 1.2E-11 3.9E-16 115.8 9.4 149 41-197 1-183 (698)
10 4dfk_A DNA polymerase I, therm 98.4 6E-07 2.1E-11 81.6 7.3 115 39-197 10-128 (540)
11 3v9w_A Ribonuclease T; DEDD nu 98.0 2.5E-05 8.7E-10 63.1 8.5 148 18-197 21-221 (235)
12 1wlj_A Interferon stimulated g 97.5 0.003 1E-07 49.1 13.3 132 39-197 5-169 (189)
13 2p1j_A POLIII, DNA polymerase 97.3 0.0045 1.5E-07 48.0 12.3 129 39-196 12-175 (186)
14 2f96_A Ribonuclease T; RNAse, 96.7 0.0045 1.5E-07 49.3 7.4 83 88-197 125-213 (224)
15 3mxm_B Three prime repair exon 96.7 0.012 4.2E-07 47.6 9.8 93 80-196 107-214 (242)
16 2gui_A DNA polymerase III epsi 96.7 0.016 5.3E-07 44.9 10.0 89 81-196 89-184 (194)
17 1bgx_T TAQ DNA polymerase; DNA 95.8 0.015 5.1E-07 55.3 6.7 115 39-197 304-420 (832)
18 2qxf_A Exodeoxyribonuclease I; 95.2 0.35 1.2E-05 43.1 13.0 133 39-195 9-199 (482)
19 4gmj_B CCR4-NOT transcription 93.7 2.6 8.9E-05 34.9 15.2 83 86-197 147-245 (285)
20 1w0h_A 3'-5' exonuclease ERI1; 93.6 0.23 7.8E-06 38.4 7.3 93 81-197 92-195 (204)
21 1y97_A Three prime repair exon 93.3 0.18 6.3E-06 40.0 6.5 94 80-197 102-210 (238)
22 1qht_A Protein (DNA polymerase 93.0 0.92 3.1E-05 42.7 11.7 146 39-194 135-327 (775)
23 2xri_A ERI1 exoribonuclease 3; 92.9 1.1 3.8E-05 35.3 10.5 131 39-195 31-212 (224)
24 1zbh_A 3'-5' exonuclease ERI1; 91.8 0.79 2.7E-05 37.9 8.7 92 81-196 160-262 (299)
25 1zbu_A ERI-1 homolog, 3'-5' ex 91.0 1 3.5E-05 38.3 8.7 92 81-196 210-312 (349)
26 3u3y_B Three prime repair exon 90.8 0.9 3.1E-05 38.2 8.0 94 80-196 107-214 (314)
27 3ikm_A DNA polymerase subunit 85.1 0.65 2.2E-05 45.2 4.0 100 90-195 195-345 (1172)
28 1s5j_A DNA polymerase I; repli 73.1 64 0.0022 30.5 14.7 140 39-191 190-387 (847)
29 3cg7_A CRN-4, cell death-relat 72.3 2.9 9.9E-05 34.7 3.6 93 81-196 102-208 (308)
30 3qex_A DNA polymerase, GP43; d 69.0 32 0.0011 33.0 10.3 174 10-193 54-338 (903)
31 2py5_A DNA polymerase; protein 67.5 31 0.0011 31.1 9.5 140 39-193 6-180 (575)
32 2a1r_A Poly(A)-specific ribonu 63.9 6.4 0.00022 34.4 4.1 103 85-197 277-397 (430)
33 3d45_A Poly(A)-specific ribonu 61.2 4 0.00014 36.4 2.4 107 81-197 268-392 (507)
34 1mhx_A Immunoglobulin-binding 57.4 15 0.00052 22.7 3.8 44 1-51 9-55 (65)
35 1uoc_A POP2; hydrolase, DEDD n 50.7 36 0.0012 28.0 6.3 90 86-197 152-265 (289)
36 2cof_A Protein KIAA1914; PH do 44.6 46 0.0016 22.1 5.3 34 3-36 68-101 (107)
37 1uoc_A POP2; hydrolase, DEDD n 44.6 35 0.0012 28.2 5.3 25 25-50 25-49 (289)
38 3rcp_A Pleckstrin homology dom 41.3 49 0.0017 21.5 4.9 32 3-34 60-91 (103)
39 2d5r_A CCR4-NOT transcription 40.2 75 0.0025 25.5 6.6 86 85-197 136-235 (252)
40 1wgq_A FYVE, rhogef and PH dom 39.8 66 0.0022 21.2 5.5 33 3-35 70-102 (109)
41 2d5r_A CCR4-NOT transcription 39.6 36 0.0012 27.4 4.6 13 39-51 24-36 (252)
42 2d9v_A Pleckstrin homology dom 36.7 51 0.0017 22.8 4.6 33 3-35 81-113 (130)
43 1noy_A Protein (DNA polymerase 33.5 42 0.0014 28.4 4.3 67 117-193 267-335 (388)
44 3cxb_B Pleckstrin homology dom 32.8 57 0.0019 22.1 4.2 34 3-36 68-101 (112)
45 1pls_A Pleckstrin homology dom 32.7 82 0.0028 20.8 5.1 33 3-35 68-100 (113)
46 1xpp_A TA1416, DNA-directed RN 29.0 1.2E+02 0.0041 21.3 5.4 36 63-98 19-56 (115)
47 2d9y_A Pleckstrin homology dom 26.8 74 0.0025 21.0 4.0 32 4-35 77-108 (117)
48 1twf_K B13.6, DNA-directed RNA 26.4 81 0.0028 22.3 4.1 45 54-98 18-64 (120)
49 1wg7_A Dedicator of cytokinesi 26.1 74 0.0025 22.3 4.0 33 3-35 91-123 (150)
50 1u5d_A SKAP55, SRC kinase-asso 25.0 77 0.0026 20.4 3.7 33 3-35 72-104 (108)
51 1wjm_A Beta-spectrin III; PH d 24.3 86 0.003 21.1 4.0 32 4-35 85-116 (123)
52 2p51_A SPCC18.06C protein; DED 23.9 92 0.0031 26.2 4.6 55 116-197 202-256 (333)
53 1unq_A RAC-alpha serine/threon 23.8 1.4E+02 0.0047 20.0 5.0 32 4-35 75-109 (125)
54 1o51_A Hypothetical protein TM 22.1 1.6E+02 0.0053 20.5 4.9 36 11-47 74-109 (114)
55 3iay_A DNA polymerase delta ca 21.5 81 0.0028 30.2 4.2 70 116-194 394-466 (919)
56 2dkp_A Pleckstrin homology dom 21.1 85 0.0029 21.1 3.4 31 4-34 87-117 (128)
57 1u5f_A SRC-associated adaptor 21.1 1.2E+02 0.004 21.2 4.3 34 3-36 86-119 (148)
58 2pa8_L DNA-directed RNA polyme 20.4 57 0.002 21.9 2.2 35 64-98 10-46 (92)
No 1
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=100.00 E-value=1.5e-42 Score=281.25 Aligned_cols=167 Identities=22% Similarity=0.252 Sum_probs=143.2
Q ss_pred EeCCHHHHHHHHHHHHhh-hccCCeEEEEeeeeccCC-----------CceeEEEeeeCCeEEEEEccccCCchHH---H
Q 039658 17 VIDDADVIDKKISELSGM-LFKMRRVVGFDVKFNSQT-----------RIAEMLILSAANLCLAIQLCRLSRIPES---V 81 (198)
Q Consensus 17 v~~~~~~~~~~i~~l~~~-~~~~~~vvg~D~Ew~~~~-----------~~~aliQla~~~~~~l~~l~~~~~~p~~---L 81 (198)
.+.+.+++..++..+... ......+||||+||.|.+ +++||||||+++.|+|||++ +.+|+. |
T Consensus 23 ~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~--~~~~~~L~~L 100 (206)
T 1vk0_A 23 DVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLP--KPFHDNLKDL 100 (206)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECC--SSCCGGGHHH
T ss_pred EEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEecc--ccCCccHHHH
Confidence 344555566666665322 112268999999999742 38999999999999999993 567777 8
Q ss_pred HhhccCCCeEEEEeeecchHhhchhcCCCCCccCceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCCCCCCCCCC
Q 039658 82 TNFLADRTICFVGFGVDKKTASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNSLSNKEIEA 160 (198)
Q Consensus 82 ~~~l~~~~i~kvG~~i~~D~~~L~~~~~~~~~~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~K~~~ 160 (198)
++||+||+|+||||++++|+++| .+.||+.+.++||++.+|+..+|.+.. .+.||+.|++++ |. .+ |+|+
T Consensus 101 ~~lL~d~~i~Kvg~~~~~D~~~L--~~~~g~~~~~~~Dl~~la~~~lg~~~~-~~~gL~~Lv~~~lg~-----~l-K~k~ 171 (206)
T 1vk0_A 101 YRFFASKFVTFVGVQIEEDLDLL--RENHGLVIRNAINVGKLAAEARGTLVL-EFLGTRELAHRVLWS-----DL-GQLD 171 (206)
T ss_dssp HHHHTCSSSEEEESSCHHHHHHH--HHHHCCCCSSEEEHHHHHHHHHTCGGG-GGCCHHHHHHHHHCC-----CC-HHHH
T ss_pred HHHhcCCCceEEEeccHHHHHHH--HHhcCCCcCCeeeHHHHHHHHcCCCCC-CCccHHHHHHHHhCC-----cC-CCCC
Confidence 89999999999999999999999 899999999999999999888897532 578999999999 99 99 8778
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHh
Q 039658 161 VTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLS 195 (198)
Q Consensus 161 ~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~ 195 (198)
+|+|||++ |||++|+.|||.|||+++.||++|.+
T Consensus 172 ~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 172 SIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999 99999999999999999999999976
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=100.00 E-value=8.5e-34 Score=228.93 Aligned_cols=178 Identities=21% Similarity=0.295 Sum_probs=154.7
Q ss_pred EEECCeEEEEEEeCCHHHHHHHHHHHHhhhccCCeEEEEeeeeccC---C--CceeEEEeeeC-CeEEEEEccccCCchH
Q 039658 6 LEIKDVKFKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQ---T--RIAEMLILSAA-NLCLAIQLCRLSRIPE 79 (198)
Q Consensus 6 v~~~~~~i~v~v~~~~~~~~~~i~~l~~~~~~~~~vvg~D~Ew~~~---~--~~~aliQla~~-~~~~l~~l~~~~~~p~ 79 (198)
++|.|. +++++++++++.++..+...+.+ ..++|||+||.+. . .++++||+|++ +.|+++++.+.+..|+
T Consensus 11 ~~f~g~---i~~i~~~~~~~~~~~~~~~~l~~-~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~~~~ 86 (208)
T 2e6m_A 11 LEFPGS---IVYSYEASDCSFLSEDISMRLSD-GDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQ 86 (208)
T ss_dssp CCCCSE---EEEECSHHHHHHHHHHHHHHCCT-TCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSSCCH
T ss_pred cccCCc---EEEEeCHHHHHHHHHHHHHHhcc-CCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccccchH
Confidence 467775 55999999999766555544433 6799999999986 2 68999999984 6899999988777888
Q ss_pred HHHhhccCCCeEEEEeeecchHhhchhcCCCCCccCceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCCCCCCCC
Q 039658 80 SVTNFLADRTICFVGFGVDKKTASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNSLSNKEI 158 (198)
Q Consensus 80 ~L~~~l~~~~i~kvG~~i~~D~~~L~~~~~~~~~~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~K~ 158 (198)
.|+.+|+||+|.||||++++|+..| .+.+|+.+.++||++.+|+..++.+ .+.||+.|++.+ |. .+.|+
T Consensus 87 ~L~~lL~d~~i~Kv~~~~k~D~~~L--~~~~gi~~~~~fDlt~lAayll~~~---~~~~L~~L~~~~l~~-----~~~K~ 156 (208)
T 2e6m_A 87 GLKMLLENKSIKKAGVGIEGDQWKL--LRDFDVKLESFVELTDVANEKLKCA---ETWSLNGLVKHVLGK-----QLLKD 156 (208)
T ss_dssp HHHHHHTCTTSEEEESSHHHHHHHH--HHHHCCCCCSEEEHHHHHHHHTTCC---CCCCHHHHHHHHHSC-----BCCCC
T ss_pred HHHHHhcCCCceEEEEeeHHHHHHH--HHHCCCCCCCEEEHHHHHHHHccCC---CChhHHHHHHHHcCC-----CcCCC
Confidence 9999999999999999999999999 7779999999999888998777753 578999999999 99 88777
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 159 EAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 159 ~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
++.++|||+.+||+++|+.|||.||++++.+|+.|.+.|
T Consensus 157 k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L 195 (208)
T 2e6m_A 157 KSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLG 195 (208)
T ss_dssp HHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 677999999999999999999999999999999999876
No 3
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.97 E-value=9.9e-30 Score=225.61 Aligned_cols=165 Identities=15% Similarity=0.147 Sum_probs=147.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhhhccCCeEEEEeeeeccCC---CceeEEEeeeCCeEEEEEccccCCchHHHHhhccCCCe
Q 039658 14 KVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQT---RIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTI 90 (198)
Q Consensus 14 ~v~v~~~~~~~~~~i~~l~~~~~~~~~vvg~D~Ew~~~~---~~~aliQla~~~~~~l~~l~~~~~~p~~L~~~l~~~~i 90 (198)
.++++++++++++|++.+.. ..+||||+||.+.. .++++||||+++.+++|++...+.....|+.+|+|++|
T Consensus 109 ~y~~I~t~e~L~~~l~~L~~-----~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~lidpl~l~~~l~~L~~lL~dp~i 183 (428)
T 3saf_A 109 PCHFISSLDELVELNEKLLN-----CQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAI 183 (428)
T ss_dssp CEEEECSHHHHHHHHHHHTT-----CSEEEEEEEEECTTCSSCEEEEEEEECSSCEEEEETTTTGGGGGGGHHHHTCTTS
T ss_pred CcEEECCHHHHHHHHHHHhc-----CCeEEEEEEecCCCCCCCeEEEEEEEeCCcEEEEEeccchhhHHHHHHHHcCCCc
Confidence 45689999999999999986 78999999998754 67999999999999999988764334689999999999
Q ss_pred EEEEeeecchHhhchhcCCCCCccCceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCCCCCCCCCCCCCCCCCCC
Q 039658 91 CFVGFGVDKKTASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNSLSNKEIEAVTPPNWNAW 169 (198)
Q Consensus 91 ~kvG~~i~~D~~~L~~~~~~~~~~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~K~~~~~~SdW~~~ 169 (198)
.||||++++|+..| .+.+|+.+.++||+ .+|+..+|.+ +.||+.|++.+ |. .++|.+ ++|||.+|
T Consensus 184 ~KV~H~~k~Dl~~L--~~~~Gi~~~~~fDT-~lAa~lL~~~----~~gL~~Lv~~~Lg~-----~l~K~~--~~sdW~~r 249 (428)
T 3saf_A 184 VKVFHGADSDIEWL--QKDFGLYVVNMFDT-HQAARLLNLG----RHSLDHLLKLYCNV-----DSNKQY--QLADWRIR 249 (428)
T ss_dssp EEEESSCHHHHHHH--HHHHCCCCSSEEEH-HHHHHHTTCS----CCSHHHHHHHHHCC-----CCCCTT--TTSCTTCS
T ss_pred eEEEeehHHHHHHH--HHHcCCCcCceeec-hhHHHHhCCC----CCCHHHHHHHHcCC-----CCCccc--cccccccC
Confidence 99999999999999 77899999999996 4677688865 57999999999 99 998864 89999999
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 170 VFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 170 pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
||+++|+.|||.||++++.||+.|...|
T Consensus 250 pLs~~q~~YAA~DA~~ll~L~~~L~~~L 277 (428)
T 3saf_A 250 PLPEEMLSYARDDTHYLLYIYDKMRLEM 277 (428)
T ss_dssp SCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.96 E-value=6.8e-28 Score=213.10 Aligned_cols=163 Identities=12% Similarity=0.131 Sum_probs=143.0
Q ss_pred EEeCCHHHHHHHHHHHHhhhccCCeEEEEeeeeccCC---CceeEEEeeeCCeEEEEEccccCCchHHHHhhccCCCeEE
Q 039658 16 SVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQT---RIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICF 92 (198)
Q Consensus 16 ~v~~~~~~~~~~i~~l~~~~~~~~~vvg~D~Ew~~~~---~~~aliQla~~~~~~l~~l~~~~~~p~~L~~~l~~~~i~k 92 (198)
+++++.+++++|++.+.. ..+||||+||.+.. .++++||||+++.+++++...+...+..|+.+|+|++|.|
T Consensus 88 ~~I~t~~~L~~~~~~L~~-----~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~~~l~~L~~lL~d~~i~K 162 (410)
T 2hbj_A 88 IWVDTSTELESMLEDLKN-----TKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVK 162 (410)
T ss_dssp EEECSHHHHHHHHHHHTT-----CSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTGGGGHHHHTCTTSEE
T ss_pred EEeCCHHHHHHHHHHHhh-----CCceEEEeeecCCcCCCCcEEEEEEEECCcEEEEechhhhhhHHHHHHHHcCCCceE
Confidence 467788999999998765 68999999998752 6799999999999999997554333467999999999999
Q ss_pred EEeeecchHhhchhcCCCCCccCceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCCCCCCCCCCCCCCCCCCCCC
Q 039658 93 VGFGVDKKTASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNSLSNKEIEAVTPPNWNAWVF 171 (198)
Q Consensus 93 vG~~i~~D~~~L~~~~~~~~~~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~K~~~~~~SdW~~~pL 171 (198)
|||++++|+..| .+++|+.+.++||++ +|+..+|.+ +.||+.|++.+ |. .++|. .++|||..|||
T Consensus 163 V~h~~k~Dl~~L--~~~~Gi~~~~~fDt~-lAa~LL~~~----~~~L~~L~~~~lg~-----~l~K~--~~~sdW~~rpL 228 (410)
T 2hbj_A 163 VFHGAFMDIIWL--QRDLGLYVVGLFDTY-HASKAIGLP----RHSLAYLLENFANF-----KTSKK--YQLADWRIRPL 228 (410)
T ss_dssp EESSCHHHHHHH--HHHHCCCCSSEEEHH-HHHHHHTCS----CCSHHHHHHHHSCC-----CCCCT--TTTSCTTCSSC
T ss_pred EEEehHHHHHHH--HHHcCCCcCCEEEcH-HHHHHhCCC----ccCHHHHHHHHcCC-----CCCcc--ccccCCCCCCC
Confidence 999999999999 888999999999975 566688864 57999999999 99 88775 47999999999
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 172 TDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 172 t~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
+++|+.|||.||++++.+|+.|.+.|
T Consensus 229 ~~~q~~YAa~Da~~ll~L~~~L~~~L 254 (410)
T 2hbj_A 229 SKPMTAAARADTHFLLNIYDQLRNKL 254 (410)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.95 E-value=3.2e-27 Score=206.42 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=142.9
Q ss_pred EEeCCHHHHHHHHHHHHhhhccCCeEEEEeeeeccCC---CceeEEEeeeCCeEEEEEccccCCchHHHHhhccCCCeEE
Q 039658 16 SVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQT---RIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICF 92 (198)
Q Consensus 16 ~v~~~~~~~~~~i~~l~~~~~~~~~vvg~D~Ew~~~~---~~~aliQla~~~~~~l~~l~~~~~~p~~L~~~l~~~~i~k 92 (198)
+++++.+++++|++.+.. ..+||||+||.+.. .++++||||+++.+++++...++ ..+.|+.+|+|++|.|
T Consensus 4 ~~I~t~~~l~~~~~~l~~-----~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~-~~~~L~~ll~d~~i~K 77 (375)
T 1yt3_A 4 QMITTDDALASLCEAVRA-----FPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSITK 77 (375)
T ss_dssp EEECSHHHHHHHHHHHTT-----SSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS-CCHHHHHHHHCTTSEE
T ss_pred EEeCCHHHHHHHHHHHcC-----CCeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCC-ChHHHHHHHcCCCceE
Confidence 467788999999998765 68999999999764 67999999998899999865443 3467999999999999
Q ss_pred EEeeecchHhhchhcCCCCCccCceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCCCCCCCCCCCCCCCCCCCCC
Q 039658 93 VGFGVDKKTASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNSLSNKEIEAVTPPNWNAWVF 171 (198)
Q Consensus 93 vG~~i~~D~~~L~~~~~~~~~~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~K~~~~~~SdW~~~pL 171 (198)
|||++++|+..| .+.+|+.+.++||++ +|+..+|.+ .+.||+.|++.+ |. .++|.+ ++|||..+||
T Consensus 78 v~h~~k~Dl~~L--~~~~Gi~~~~~fDt~-lAa~lL~~~---~~~~L~~L~~~~l~~-----~l~K~~--~~sdw~~rpL 144 (375)
T 1yt3_A 78 FLHAGSEDLEVF--LNVFGELPQPLIDTQ-ILAAFCGRP---MSWGFASMVEEYSGV-----TLDKSE--SRTDWLARPL 144 (375)
T ss_dssp EESSCHHHHHHH--HHHHSSCCSSEEEHH-HHHHHTTCC---TTCCHHHHHHHHHCC-----CCCCTT--TTSCTTSSSC
T ss_pred EEeeHHHHHHHH--HHHcCCCCCcEEEcH-HHHHHcCCC---CChhHHHHHHHHcCC-----CCCCCc--ccCCCCCCCC
Confidence 999999999999 777999999999975 566677765 478999999999 99 888765 7899999999
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 172 TDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 172 t~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
+++|+.|||.||++++.+|+.|.+.|
T Consensus 145 ~~~q~~YAa~Da~~l~~L~~~L~~~L 170 (375)
T 1yt3_A 145 TERQCEYAAADVWYLLPITAKLMVET 170 (375)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.90 E-value=2.6e-23 Score=185.21 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=135.3
Q ss_pred EEeCCHHHHHHHHHHHHhhhccCC-eEEEEeeeeccCC---CceeEEEeeeC-CeEEEEEccccC---CchHHHHhhccC
Q 039658 16 SVIDDADVIDKKISELSGMLFKMR-RVVGFDVKFNSQT---RIAEMLILSAA-NLCLAIQLCRLS---RIPESVTNFLAD 87 (198)
Q Consensus 16 ~v~~~~~~~~~~i~~l~~~~~~~~-~vvg~D~Ew~~~~---~~~aliQla~~-~~~~l~~l~~~~---~~p~~L~~~l~~ 87 (198)
.++++.+++++|++.+.. . .+||||+||.+.. .++++||||++ +.+++|+..... .-...|+.+|+|
T Consensus 19 ~~I~t~e~L~~~~~~L~~-----~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~~lL~d 93 (440)
T 3cym_A 19 NVIDTLPAFRDYCSELAS-----SHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGD 93 (440)
T ss_dssp CEECSHHHHHHHHHHHHS-----CEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHHTT
T ss_pred EeeCCHHHHHHHHHHHHh-----cCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccCHHHHHHHHCC
Confidence 356778999999998765 5 7899999998753 68999999984 458888764321 114679999999
Q ss_pred CCeEEEEeeecchHhhchhcCCCCCccCceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCCCCCCCCCCCCCCCC
Q 039658 88 RTICFVGFGVDKKTASIHGKTGYPRNCDTGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNSLSNKEIEAVTPPNW 166 (198)
Q Consensus 88 ~~i~kvG~~i~~D~~~L~~~~~~~~~~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~K~~~~~~SdW 166 (198)
+ .||||++++|+..| . ++|+.+.+.||+ .+|+..+|.+ +.||+.|++.+ |. .++|.. ++|||
T Consensus 94 ~--~KV~h~~k~Dl~~L--~-~~gi~~~~~fDt-~lAa~lL~~~----~~gL~~L~~~~lg~-----~~~K~~--~~sdw 156 (440)
T 3cym_A 94 A--VWILHDSLQDLPGF--D-ELGMEPQRLFDT-EIAARLLGLK----RFGLAAVTEHFLGL-----TLAKEH--SAADW 156 (440)
T ss_dssp C--EEEESSHHHHHHHH--H-HHTCCCCEEEEH-HHHHHHTTCS----SCSHHHHHHHHHCE-----ECCCCC--TTCCT
T ss_pred C--CEEEEcCHHHHHHH--H-HcCCcCCceehH-HHHHHHhCCC----CCCHHHHHHHHhCC-----Cccccc--ccCCC
Confidence 7 69999999999999 6 899999999997 6777788753 78999999999 99 888754 78999
Q ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 167 NAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 167 ~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
..+||+++|+.|||.||++++.+|+.|.+.|
T Consensus 157 ~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L 187 (440)
T 3cym_A 157 SYRPLPRDWRNYAALDVELLIELETKMRAEL 187 (440)
T ss_dssp TCSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.66 E-value=2.5e-15 Score=138.45 Aligned_cols=162 Identities=18% Similarity=0.165 Sum_probs=126.8
Q ss_pred EeCCHHHHHHHHHHHHhhhccCCeEEEEeeeeccCC---CceeEEEeee-CCeEEEEEcccc-----CCc-----hHHHH
Q 039658 17 VIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQT---RIAEMLILSA-ANLCLAIQLCRL-----SRI-----PESVT 82 (198)
Q Consensus 17 v~~~~~~~~~~i~~l~~~~~~~~~vvg~D~Ew~~~~---~~~aliQla~-~~~~~l~~l~~~-----~~~-----p~~L~ 82 (198)
++++++++++|++.+.. ..+++||+|+.... ..+..||+|+ ++..+.+.+.+. +.+ .+.|+
T Consensus 9 ~I~~~~~l~~~~~~l~~-----~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~ 83 (605)
T 2kfn_A 9 TILDEETLKAWIAKLEK-----APVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLK 83 (605)
T ss_dssp ECCSHHHHHHHHHHHHT-----SSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHH
T ss_pred EecCHHHHHHHHHhccc-----CCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHHH
Confidence 46678999999998765 57799999998763 6788999997 665555544331 112 24699
Q ss_pred hhccCCCeEEEEeeecchHhhchhcCCCCCccCc-eeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCCCCCC----
Q 039658 83 NFLADRTICFVGFGVDKKTASIHGKTGYPRNCDT-GIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNSLSNK---- 156 (198)
Q Consensus 83 ~~l~~~~i~kvG~~i~~D~~~L~~~~~~~~~~~~-~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~---- 156 (198)
.+|+|+++.||||+++.|+..| .+ +|+.+.+ ++|+ .+++..++.. . .+.||+.|++.+ |. ...
T Consensus 84 ~~L~d~~i~kV~hnak~D~~~L--~~-~Gi~l~~~~~DT-~laayLL~p~-~-~~~~L~~La~~~Lg~-----~~i~~~~ 152 (605)
T 2kfn_A 84 PLLEDEKALKVGQNLKYDRGIL--AN-YGIELRGIAFDT-MLESYILNSV-A-GRHDMDSLAERWLKH-----KTITFEE 152 (605)
T ss_dssp HHHTCTTSCEEESSHHHHHHHH--HT-TTCCCCCEEEEH-HHHHHHHCTT-S-SCCSHHHHHHHHSCC-----CCCCHHH
T ss_pred HHHcCCCCeEEEECcHHHHHHH--HH-CCCCCCCccccH-HHHHHHhCCC-C-CCCCHHHHHHHhcCC-----CcccHHH
Confidence 9999999999999999999999 54 7888876 7995 4566666632 2 468999999999 88 432
Q ss_pred ---CCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 157 ---EIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 157 ---K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
|.+ +.++|...|| ++|.+||+.||+++..+|.+|.+.|
T Consensus 153 ~~gKg~--~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L 193 (605)
T 2kfn_A 153 IAGKGK--NQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDL 193 (605)
T ss_dssp HHCSST--TCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCc--ccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 5679998898 7899999999999999999998876
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.37 E-value=1.4e-12 Score=119.89 Aligned_cols=144 Identities=15% Similarity=0.033 Sum_probs=113.8
Q ss_pred eEEEEeeeeccCC---CceeEEEeeeCCeEEEEEccccCCchHHHHhhccCCCeEEEEeeecchHhhchhcCCCCCccC-
Q 039658 40 RVVGFDVKFNSQT---RIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKTASIHGKTGYPRNCD- 115 (198)
Q Consensus 40 ~vvg~D~Ew~~~~---~~~aliQla~~~~~~l~~l~~~~~~p~~L~~~l~~~~i~kvG~~i~~D~~~L~~~~~~~~~~~- 115 (198)
...++|+|..... ..++.||+|+++.++.+.+.+.. ..+.|+.+|+|+++.||||+++.|+..| . .+|+.+.
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~~~~-~l~~Lk~lLed~~i~KV~hn~K~Dl~vL--~-~~Gi~l~g 105 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETAL-ADPQFVAWLGDETKKKSMFDSKRAAVAL--K-WKGIELCG 105 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHHHT-TCHHHHHHHTCTTSEEEESSHHHHHHHH--H-HTTCCCCC
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEcCCceEEEccchhh-HHHHHHHHHhCCCCeEEEechHHHHHHH--H-HcCCCCCC
Confidence 4578999987654 66899999998887777654322 2357999999999999999999999999 4 3688875
Q ss_pred ceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHhHHHHHHHHH
Q 039658 116 TGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNSLSNKEIEAVTPPNWNA---WVFTDKQVLHAVEEARGCYIVAD 191 (198)
Q Consensus 116 ~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~K~~~~~~SdW~~---~pLt~~Qi~YAA~Da~~~~~i~~ 191 (198)
..|| +.+|+-.++... ++.||+.|++++ |. .+.+.+ +..+|.+ .|.+++|..|||.||.+++.+|+
T Consensus 106 ~~fD-TmLAAYLL~p~~--~~~~L~~La~~yLg~-----~l~~~e--e~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~ 175 (592)
T 3pv8_A 106 VSFD-LLLAAYLLDPAQ--GVDDVAAAAKMKQYE-----AVRPDE--AVYGKGAKRAVPDEPVLAEHLVRKAAAIWELER 175 (592)
T ss_dssp EEEE-HHHHHHHHCGGG--CCCSHHHHHGGGTCC-----SSCCHH--HHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccch-HHHHHHHcCCCC--CCCCHHHHHHHHcCC-----CCchHH--HhcCccccccCccHHHHHHHHHHHHHHHHHHHH
Confidence 5789 467776666432 367999999999 98 777643 4456654 45668899999999999999999
Q ss_pred HHHhhh
Q 039658 192 KLLSLL 197 (198)
Q Consensus 192 ~L~~~l 197 (198)
.|...|
T Consensus 176 ~L~~~L 181 (592)
T 3pv8_A 176 PFLDEL 181 (592)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.26 E-value=1.2e-11 Score=115.76 Aligned_cols=149 Identities=12% Similarity=0.038 Sum_probs=106.4
Q ss_pred EEEEeeeeccCC---CceeEEEeee--CCeEEEEEccccCCchHHHHhhccCCCeEEEEeee-cchHhhchhcCCC----
Q 039658 41 VVGFDVKFNSQT---RIAEMLILSA--ANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGV-DKKTASIHGKTGY---- 110 (198)
Q Consensus 41 vvg~D~Ew~~~~---~~~aliQla~--~~~~~l~~l~~~~~~p~~L~~~l~~~~i~kvG~~i-~~D~~~L~~~~~~---- 110 (198)
+|+||+|..... .+++++|++. .+.+++++....+...+.|+.+|+ +++.||||++ +.|+..| .+.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L--~~~~~~~~ 77 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-RGGLIVFHNGHKYDVPAL--TKLAKLQL 77 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-TTCCEEESSTTTTHHHHH--HHHHHHHH
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh-cCCeEEEcCChHHHHHHH--HHhhhhcc
Confidence 489999987654 7899999999 457888875433223467999999 9999999998 9999999 5543
Q ss_pred --CCccC--ceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCC--CCC-----C-----------CCCCCCC-CCC
Q 039658 111 --PRNCD--TGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNS--LSN-----K-----------EIEAVTP-PNW 166 (198)
Q Consensus 111 --~~~~~--~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~--~~l-----~-----------K~~~~~~-SdW 166 (198)
|+.+. ..+|. .+++..++... .+.||..|++.+ +.+-.. ..+ + |.++.+. ++|
T Consensus 78 ~~Gi~l~~~~~~DT-mlaayLL~p~~--~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~ 154 (698)
T 1x9m_A 78 NREFHLPRENCIDT-LVLSRLIHSNL--KDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEW 154 (698)
T ss_dssp CCCCCCCGGGEEEH-HHHHHHHTTTS--CCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGG
T ss_pred cCCccCCCCcchhH-HHHHHHhCCCC--CCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCc
Confidence 76655 68995 56666766432 367788888777 320000 011 1 2222122 389
Q ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 167 NAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 167 ~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
.. +++++.+||+.||.+...+|++|...|
T Consensus 155 ~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L 183 (698)
T 1x9m_A 155 WN--FNEEMMDYNVQDVVVTKALLEKLLSDK 183 (698)
T ss_dssp TS--CCHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cc--cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 669999999999999999999998876
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.36 E-value=6e-07 Score=81.60 Aligned_cols=115 Identities=13% Similarity=-0.032 Sum_probs=89.2
Q ss_pred CeEEEEeeeeccCC---CceeEEEeeeCCeEEEEEccccCCchHHHHhhccCCCeEEEEeeecchHhhchhcCCCCCccC
Q 039658 39 RRVVGFDVKFNSQT---RIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKTASIHGKTGYPRNCD 115 (198)
Q Consensus 39 ~~vvg~D~Ew~~~~---~~~aliQla~~~~~~l~~l~~~~~~p~~L~~~l~~~~i~kvG~~i~~D~~~L~~~~~~~~~~~ 115 (198)
++-+++|||+.... ..++.||+|.++.++.++ ...+.|+.||+| +.||||+++.|+. .+|+.+.
T Consensus 10 p~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~-----~~l~~l~~~l~d--~~kV~hn~K~Dl~------~~Gi~~~ 76 (540)
T 4dfk_A 10 PEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP-----EPYKALRDLKEA--RGLLAKDLSVLAL------REGLGLP 76 (540)
T ss_dssp CTTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS-----SHHHHHTTCSSB--CSTTHHHHHHHHH------HTTCCCC
T ss_pred CCceEEEEEecCCccCcccEEEEEEEcCCEEEEeh-----hhHHHHHHHHcC--CCEEEeccHHHHH------HcCCCCC
Confidence 34499999998765 668999999988877654 234679999998 8899999999998 2455555
Q ss_pred ceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHH
Q 039658 116 TGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLL 194 (198)
Q Consensus 116 ~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~ 194 (198)
..||+ .+++..++.. +.||+.||+++ +. +.| +|+.||.+++.+|..|.
T Consensus 77 ~~fDT-~laAyLL~p~----~~~L~~La~~yl~~------~gk--------------------~a~~DA~~t~~L~~~L~ 125 (540)
T 4dfk_A 77 PGDDP-MLLAYLLDPS----NTTPEGVARRYGGE------WTE--------------------EAGERAALSERLFANLW 125 (540)
T ss_dssp BCCCH-HHHHHHHCTT----CCCHHHHHHHHTSC------CCS--------------------CHHHHHHHHHHHHHHHH
T ss_pred cceeH-HHHHHHhCCC----CCCHHHHHHHHhhh------hcc--------------------chHHHHHHHHHHHHHHH
Confidence 78995 5666566533 57999999999 53 111 37799999999999999
Q ss_pred hhh
Q 039658 195 SLL 197 (198)
Q Consensus 195 ~~l 197 (198)
+.|
T Consensus 126 ~~L 128 (540)
T 4dfk_A 126 GRL 128 (540)
T ss_dssp HHT
T ss_pred HHH
Confidence 887
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.97 E-value=2.5e-05 Score=63.06 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=89.6
Q ss_pred eCCHHHHHHHHHHHHhhhccCCeEEEEeeeeccCC-CceeEEEeeeC-------CeE-------EEEEccccCC------
Q 039658 18 IDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQT-RIAEMLILSAA-------NLC-------LAIQLCRLSR------ 76 (198)
Q Consensus 18 ~~~~~~~~~~i~~l~~~~~~~~~vvg~D~Ew~~~~-~~~aliQla~~-------~~~-------~l~~l~~~~~------ 76 (198)
+++.+....+...+.. ..++.||+|..... .+-.+|||+.- +.. .+++......
T Consensus 21 ~~~~~~~~~l~~~l~~-----~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~ 95 (235)
T 3v9w_A 21 MSDNAQLTGLCDRFRG-----FYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEAL 95 (235)
T ss_dssp --------CHHHHTTT-----EEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHH
T ss_pred ccccccccCchhcccC-----CcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHH
Confidence 4566666666666654 68999999998543 34456666541 221 1122210000
Q ss_pred ----------------c---hHHHHhhccC-------CCeEEEEeeecchHhhchh-cCCCCCcc-----CceeehHHHH
Q 039658 77 ----------------I---PESVTNFLAD-------RTICFVGFGVDKKTASIHG-KTGYPRNC-----DTGIDLGHLA 124 (198)
Q Consensus 77 ----------------~---p~~L~~~l~~-------~~i~kvG~~i~~D~~~L~~-~~~~~~~~-----~~~~Dl~~la 124 (198)
+ -+.+.+++.+ ++.+.|||++..|...|.. ...+|+.. ...+|+..++
T Consensus 96 ~i~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la 175 (235)
T 3v9w_A 96 AFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALA 175 (235)
T ss_dssp HHHCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHH
T ss_pred HHhCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHH
Confidence 0 1234555542 5788999999999998831 12346542 3578988877
Q ss_pred HHHhCCCCCCCCccHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 125 ARVLKKPKLIGLTGIAELAKEVGIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 125 ~~~~g~~~l~~~~sL~~l~~~~g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
+..+ | ..+|..|++.+|+ .... .+-++|..||.++..||.+|.+.|
T Consensus 176 ~~~~--p----~~~L~~l~~~~gi-----~~~~----------------~~~H~Al~DA~~ta~l~~~l~~~l 221 (235)
T 3v9w_A 176 GLAL--G----QTVLSKACQTAGM-----DFDS----------------TQAHSALYDTERTAVLFCEIVNRW 221 (235)
T ss_dssp HHHH--S----CCSHHHHHHHHTC-----CCCT----------------TTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--C----CCCHHHHHHHcCC-----CCCC----------------CCCcChHHHHHHHHHHHHHHHHHH
Confidence 7555 3 3489999998877 4321 234789999999999999998765
No 12
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.49 E-value=0.003 Score=49.12 Aligned_cols=132 Identities=16% Similarity=0.083 Sum_probs=81.9
Q ss_pred CeEEEEeeeeccCC-C-ceeEEEeee---CCeEE---EEEccc-cC-------C-----------ch---HHHHhhccCC
Q 039658 39 RRVVGFDVKFNSQT-R-IAEMLILSA---ANLCL---AIQLCR-LS-------R-----------IP---ESVTNFLADR 88 (198)
Q Consensus 39 ~~vvg~D~Ew~~~~-~-~~aliQla~---~~~~~---l~~l~~-~~-------~-----------~p---~~L~~~l~~~ 88 (198)
..++.||+|.+... . ...++|++. .+..+ +++... +. . ++ +.|.+|+.
T Consensus 5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~-- 82 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLK-- 82 (189)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHT--
T ss_pred CeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHC--
Confidence 57899999997643 2 235667775 23332 222211 00 0 11 24667776
Q ss_pred CeEEEEeeecchHhhchhcCCCCCccCceeehHHHHH--HHhCCCCCCCCccHHHHHHHh-CCCCCCCCCCCCCCCCCCC
Q 039658 89 TICFVGFGVDKKTASIHGKTGYPRNCDTGIDLGHLAA--RVLKKPKLIGLTGIAELAKEV-GIDHNSLSNKEIEAVTPPN 165 (198)
Q Consensus 89 ~i~kvG~~i~~D~~~L~~~~~~~~~~~~~~Dl~~la~--~~~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~K~~~~~~Sd 165 (198)
+-+.|||++..|.+.| ...++ ....+|+..++. +..+.|.. ...||+.|++.+ |+ ++...
T Consensus 83 ~~~lV~hn~~fD~~~L--~~~~~--~~~~idt~~~~~~~~~~~~p~~-~~~~L~~l~~~~lgi-----~~~~~------- 145 (189)
T 1wlj_A 83 GKLVVGHDLKHDFQAL--KEDMS--GYTIYDTSTDRLLWREAKLDHC-RRVSLRVLSERLLHK-----SIQNS------- 145 (189)
T ss_dssp TSEEEESSHHHHHHHT--TCCCT--TCEEEEGGGCHHHHHHHTC------CCHHHHHHHHTCC-----CCSCC-------
T ss_pred CCEEEECCcHHHHHHH--HHhCC--CCceechHhhhhhhhcccCCCC-CCccHHHHHHHHcCC-----CCCCC-------
Confidence 4578999999999999 66553 246899766532 21244432 478999999996 88 55321
Q ss_pred CCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 166 WNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 166 W~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
.+-+-|..||.++..+|.++.+.+
T Consensus 146 --------~~~H~Al~Da~ata~l~~~l~~~~ 169 (189)
T 1wlj_A 146 --------LLGHSSVEDARATMELYQISQRIR 169 (189)
T ss_dssp --------TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCcCcHHHHHHHHHHHHHHHHHH
Confidence 113568999999999999988754
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.31 E-value=0.0045 Score=47.97 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=82.4
Q ss_pred CeEEEEeeeeccCC-CceeEEEeee----CCeEE-EEE-ccccC-Cc---------------------h---HHHHhhcc
Q 039658 39 RRVVGFDVKFNSQT-RIAEMLILSA----ANLCL-AIQ-LCRLS-RI---------------------P---ESVTNFLA 86 (198)
Q Consensus 39 ~~vvg~D~Ew~~~~-~~~aliQla~----~~~~~-l~~-l~~~~-~~---------------------p---~~L~~~l~ 86 (198)
..++.||+|..... ..-.+|||+. .+.+. -++ +.+.. .+ + +.|.+++.
T Consensus 12 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~l~ 91 (186)
T 2p1j_A 12 ATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGFLE 91 (186)
T ss_dssp -CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHHSS
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHHHC
Confidence 57999999998543 2345777763 33322 121 12111 11 1 23566676
Q ss_pred CCCeEEEEeeecchHhhchh-cCCCCCc--cCceeehHHHHHHHhCCCCCCCCccHHHHHHHhCCCCCCCCCCCCCCCCC
Q 039658 87 DRTICFVGFGVDKKTASIHG-KTGYPRN--CDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDHNSLSNKEIEAVTP 163 (198)
Q Consensus 87 ~~~i~kvG~~i~~D~~~L~~-~~~~~~~--~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g~~~~~~~l~K~~~~~~ 163 (198)
+ -+.|||++..|...|.. ...+|+. ....+|+..+++...+. .+.+|..+++.+|+ ...
T Consensus 92 ~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~----~~~~L~~l~~~~gi-----~~~------- 153 (186)
T 2p1j_A 92 D--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKL----RSYSLDSVVEKLGL-----GPF------- 153 (186)
T ss_dssp S--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCC----SCCSHHHHHHHTTC-----CST-------
T ss_pred C--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhc----CCCCHHHHHHHcCC-----CCC-------
Confidence 4 46899999999998831 1123443 35789988877765522 46799999987777 321
Q ss_pred CCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhh
Q 039658 164 PNWNAWVFTDKQVLHAVEEARGCYIVADKLLSL 196 (198)
Q Consensus 164 SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~ 196 (198)
+-+.|..||.++..++.++.+.
T Consensus 154 -----------~~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 154 -----------RHHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp -----------TCCHHHHHHHHHHHHHHHHTTC
T ss_pred -----------CCcCHHHHHHHHHHHHHHHHHH
Confidence 1368999999999999998764
No 14
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=96.71 E-value=0.0045 Score=49.35 Aligned_cols=83 Identities=11% Similarity=0.057 Sum_probs=58.6
Q ss_pred CCeEEEEeeecchHhhchh-cCCCCCc-----cCceeehHHHHHHHhCCCCCCCCccHHHHHHHhCCCCCCCCCCCCCCC
Q 039658 88 RTICFVGFGVDKKTASIHG-KTGYPRN-----CDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDHNSLSNKEIEAV 161 (198)
Q Consensus 88 ~~i~kvG~~i~~D~~~L~~-~~~~~~~-----~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g~~~~~~~l~K~~~~ 161 (198)
++-+.|||++..|...|.. ...+|+. ....+|+..+++..++ +.+|..|++.+|+ .+..
T Consensus 125 ~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~------~~~L~~l~~~~gi-----~~~~---- 189 (224)
T 2f96_A 125 KRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG------QTVLAKACQAAGM-----EFDN---- 189 (224)
T ss_dssp SEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS------CCSHHHHHHHTTC-----CCCT----
T ss_pred CCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC------CCCHHHHHHHcCC-----CcCC----
Confidence 3567899999999998831 1123443 2468998888876653 3479999988777 4321
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 162 TPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 162 ~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
.+-+-|..||.++..|+.++.+.+
T Consensus 190 ------------~~~H~Al~Da~~ta~l~~~l~~~~ 213 (224)
T 2f96_A 190 ------------REAHSARYDTEKTAELFCGIVNRW 213 (224)
T ss_dssp ------------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCCChHHHHHHHHHHHHHHHHHH
Confidence 123458999999999999988764
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=96.66 E-value=0.012 Score=47.60 Aligned_cols=93 Identities=6% Similarity=-0.017 Sum_probs=61.3
Q ss_pred HHHhhccC--CCeEEEEee-ecchHhhchh-cCCCCCcc----CceeehHHHHHHHhC--C----CCCCCCccHHHHHHH
Q 039658 80 SVTNFLAD--RTICFVGFG-VDKKTASIHG-KTGYPRNC----DTGIDLGHLAARVLK--K----PKLIGLTGIAELAKE 145 (198)
Q Consensus 80 ~L~~~l~~--~~i~kvG~~-i~~D~~~L~~-~~~~~~~~----~~~~Dl~~la~~~~g--~----~~l~~~~sL~~l~~~ 145 (198)
.|.+|+.+ +..+.|||+ +..|...|.. .+.+|+.. ..++|...+++.... . |.. .+.+|..++++
T Consensus 107 ~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~-~~~~L~~l~~~ 185 (242)
T 3mxm_B 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSR-KSYSLGSIYTR 185 (242)
T ss_dssp HHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC-------CCCSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCC-CCcCHHHHHHH
Confidence 35666665 236789999 5999998832 12456543 257998877764331 1 222 57799999999
Q ss_pred h-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhh
Q 039658 146 V-GIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSL 196 (198)
Q Consensus 146 ~-g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~ 196 (198)
+ |+ ..... +-|..||.++.+|+.++.+.
T Consensus 186 ~~gi-----~~~~~------------------H~Al~Da~ata~l~~~~~~~ 214 (242)
T 3mxm_B 186 LYWQ-----APTDS------------------HTAEGDDLTLLSICQWKPQA 214 (242)
T ss_dssp HHSS-----CCSST------------------TSHHHHHHHHHHHHTSSHHH
T ss_pred HhCC-----CCCCC------------------cChHHHHHHHHHHHHHHHHH
Confidence 6 88 44211 34789999999998876543
No 16
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=96.65 E-value=0.016 Score=44.93 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=60.0
Q ss_pred HHhhccCCCeEEEEeeecchHhhchh-cCCCCCc---c---CceeehHHHHHHHhCCCCCCCCccHHHHHHHhCCCCCCC
Q 039658 81 VTNFLADRTICFVGFGVDKKTASIHG-KTGYPRN---C---DTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDHNSL 153 (198)
Q Consensus 81 L~~~l~~~~i~kvG~~i~~D~~~L~~-~~~~~~~---~---~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g~~~~~~ 153 (198)
+.+++.+. +.|||++..|...|.. ...+|+. . ...+|+..+++..+ |. ...+|..|++.+|+
T Consensus 89 ~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~--p~--~~~~L~~l~~~~gi----- 157 (194)
T 2gui_A 89 FMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMF--PG--KRNSLDALCARYEI----- 157 (194)
T ss_dssp HHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHS--TT--SCCSHHHHHHHTTC-----
T ss_pred HHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHc--CC--CCCCHHHHHHHcCc-----
Confidence 56677643 5789999999998831 1233444 1 47899877776554 32 24699999988776
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhh
Q 039658 154 SNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSL 196 (198)
Q Consensus 154 ~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~ 196 (198)
.... ..-+-|..||.++.+||.++.+.
T Consensus 158 ~~~~----------------~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 158 DNSK----------------RTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp CCTT----------------CSSCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCC----------------CCCCChHHHHHHHHHHHHHHHhc
Confidence 3321 01234789999999999988653
No 17
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=95.80 E-value=0.015 Score=55.33 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=80.4
Q ss_pred CeEEEEeeeeccCC-CceeEEEeee-CCeEEEEEccccCCchHHHHhhccCCCeEEEEeeecchHhhchhcCCCCCccCc
Q 039658 39 RRVVGFDVKFNSQT-RIAEMLILSA-ANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKTASIHGKTGYPRNCDT 116 (198)
Q Consensus 39 ~~vvg~D~Ew~~~~-~~~aliQla~-~~~~~l~~l~~~~~~p~~L~~~l~~~~i~kvG~~i~~D~~~L~~~~~~~~~~~~ 116 (198)
...++||+|..... ..+| +++|. ++..+.+.+ + .+.|+.+|+|+++ +.+.|...| .+ +|+.+..
T Consensus 304 ~~~va~d~et~~~~~~~l~-vg~a~~~g~a~yvp~-~----~~~Lk~lLed~~i-----n~K~d~~~L--~~-~Gi~~~~ 369 (832)
T 1bgx_T 304 GAFVGFVLSRKEPMWADLL-ALAAARGGRVHRAPE-P----YKALRDLKEARGL-----LAKDLSVLA--LR-EGLGLPP 369 (832)
T ss_dssp TCCBEEECSSSCTTTCCCC-EEECBSSSEEECCSC-H----HHHHHHCSSBCBT-----THHHHHHHH--HH-HTCCCCB
T ss_pred CceEEEEEecCCcccCcee-EEEEEcCCCEEEEEC-C----HHHHHHHHhCCCC-----ChHHHHHHH--HH-cCCccCc
Confidence 34589999866511 2333 66886 455554433 2 1569999999987 889999988 43 7888886
Q ss_pred eeehHHHHHHHhCCCCCCCCccHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhh
Q 039658 117 GIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSL 196 (198)
Q Consensus 117 ~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~ 196 (198)
.+|+ .+++-.+. |. ..||+.|++.+|. . |. ++ || .||.+.+.+|+.|...
T Consensus 370 ~~Dt-~laayLl~-p~---~~~l~~l~~~~gk-----~-----------~~------~~--ya-~da~~~~~l~~~l~~~ 419 (832)
T 1bgx_T 370 GDDP-MLLAYLLD-PS---NTTPEGVARRYGG-----E-----------WT------EE--AG-ERAALSERLFANLWGR 419 (832)
T ss_dssp CCCH-HHHHHHHC-TT---CCSTTHHHHHHSC-----C-----------CC------SS--HH-HHHHHHHHHHHHHHHH
T ss_pred ccCH-HHHHHHcC-CC---CCCHHHHHHHhCC-----C-----------ch------HH--HH-HHHHHHHHHHHHHHHH
Confidence 7895 56665655 32 4589999988842 1 31 12 88 6999999999999877
Q ss_pred h
Q 039658 197 L 197 (198)
Q Consensus 197 l 197 (198)
|
T Consensus 420 L 420 (832)
T 1bgx_T 420 L 420 (832)
T ss_dssp H
T ss_pred H
Confidence 6
No 18
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=95.15 E-value=0.35 Score=43.09 Aligned_cols=133 Identities=11% Similarity=0.094 Sum_probs=79.9
Q ss_pred CeEEEEeeeeccCC-CceeEEEeee---C--Ce------EEEEEccc-c--------------------CCc-h---HHH
Q 039658 39 RRVVGFDVKFNSQT-RIAEMLILSA---A--NL------CLAIQLCR-L--------------------SRI-P---ESV 81 (198)
Q Consensus 39 ~~vvg~D~Ew~~~~-~~~aliQla~---~--~~------~~l~~l~~-~--------------------~~~-p---~~L 81 (198)
..+|.||+|++... ..-.+|||+. . +. ..+++... . +.. + +.+
T Consensus 9 ~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~f 88 (482)
T 2qxf_A 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARI 88 (482)
T ss_dssp CEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHHH
Confidence 67999999998653 3356788874 2 21 22332211 0 001 1 125
Q ss_pred HhhccCCCeEEEEee-ecchHhhchh-cCCCCCcc--------CceeehHHHHHHHhC-------CC----CCCCCccHH
Q 039658 82 TNFLADRTICFVGFG-VDKKTASIHG-KTGYPRNC--------DTGIDLGHLAARVLK-------KP----KLIGLTGIA 140 (198)
Q Consensus 82 ~~~l~~~~i~kvG~~-i~~D~~~L~~-~~~~~~~~--------~~~~Dl~~la~~~~g-------~~----~l~~~~sL~ 140 (198)
.+++..++-+.|||+ +..|...|.. ...+|+.+ ...+|+-.+++.... .| .. ...+|.
T Consensus 89 ~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~-~s~kL~ 167 (482)
T 2qxf_A 89 HSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL-PSFRLE 167 (482)
T ss_dssp HHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSS-BCCCHH
T ss_pred HHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCC-CCCCHH
Confidence 567775678899998 9999988831 11223321 457887777664331 01 11 356899
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHh
Q 039658 141 ELAKEVGIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLS 195 (198)
Q Consensus 141 ~l~~~~g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~ 195 (198)
.|++.+|+ .... -+=|..||+++..++..+.+
T Consensus 168 ~L~~~~Gi-----~~~~------------------aHrAL~DA~aTa~l~~~l~~ 199 (482)
T 2qxf_A 168 HLTKANGI-----EHSN------------------AHDAMADVYATIAMAKLVKT 199 (482)
T ss_dssp HHHHHTTC-----CCC---------------------CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-----CCCC------------------CCCHHHHHHHHHHHHHHHHH
Confidence 99987777 3211 13368899999999988764
No 19
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=93.66 E-value=2.6 Score=34.90 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=57.1
Q ss_pred cCCCeEEEEeeecchHhhchhcCCC---CCc-------------cCceeehHHHHHHHhCCCCCCCCccHHHHHHHhCCC
Q 039658 86 ADRTICFVGFGVDKKTASIHGKTGY---PRN-------------CDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGID 149 (198)
Q Consensus 86 ~~~~i~kvG~~i~~D~~~L~~~~~~---~~~-------------~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g~~ 149 (198)
-++++..|.+....|+..| .+.+ +++ ...++|+..+++. ++ .+ +.||.++|+.+|++
T Consensus 147 l~~~v~WvtfH~~yDf~yL--~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~-~~--~l--~ggL~~lA~~L~v~ 219 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYL--IKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKS-CK--NL--KGGLQEVAEQLELE 219 (285)
T ss_dssp SCTTCEEEESSCHHHHHHH--HHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGG-ST--TC--CSCHHHHHHHTTCC
T ss_pred hcCCCceEEecchhhHHHH--HHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHh-cc--cc--CChHHHHHHhCCCC
Confidence 4688999999999999766 3211 111 1468998877653 22 22 56899999998551
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 150 HNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 150 ~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
++.+. +=|..|++....+|-+|++.+
T Consensus 220 ----r~g~~------------------HqAGsDSllT~~~F~kl~~~~ 245 (285)
T 4gmj_B 220 ----RIGPQ------------------HQAGSDSLLTGMAFFKMREMF 245 (285)
T ss_dssp ----CCSCT------------------TSHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCC------------------CcchhHHHHHHHHHHHHHHHH
Confidence 22211 228999999999999998764
No 20
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=93.55 E-value=0.23 Score=38.36 Aligned_cols=93 Identities=9% Similarity=0.045 Sum_probs=62.7
Q ss_pred HHhhccCC-----CeEEEEeeecchHh-hchh-cCCCCCcc----CceeehHHHHHHHhCCCCCCCCccHHHHHHHhCCC
Q 039658 81 VTNFLADR-----TICFVGFGVDKKTA-SIHG-KTGYPRNC----DTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGID 149 (198)
Q Consensus 81 L~~~l~~~-----~i~kvG~~i~~D~~-~L~~-~~~~~~~~----~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g~~ 149 (198)
+.+|+.+. ..+.|||+...|.. .|.. ...+|+.. ...+|+..+++..++.+. ...+|..+++.+|+
T Consensus 92 ~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~--~~~~L~~l~~~~gi- 168 (204)
T 1w0h_A 92 VIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR--SQTKLTIMLEKLGM- 168 (204)
T ss_dssp HHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCG--GGCSHHHHHHHTTC-
T ss_pred HHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCC--ccchHHHHHHHcCC-
Confidence 45566543 34689999999996 7721 11234432 268999888877766532 24689999988776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 150 HNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 150 ~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
.... +-+-|..||.++..|+.++.+..
T Consensus 169 ----~~~~-----------------~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 169 ----DYDG-----------------RPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp ----CCCS-----------------CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----CCCC-----------------CccCcHHHHHHHHHHHHHHHHCC
Confidence 3321 11347899999999999998753
No 21
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=93.27 E-value=0.18 Score=40.00 Aligned_cols=94 Identities=11% Similarity=0.050 Sum_probs=61.5
Q ss_pred HHHhhccCC--CeEEEEeee-cchHhhchh-cCCCCCcc---CceeehHHHHHHHhC--C-----CCCCCCccHHHHHHH
Q 039658 80 SVTNFLADR--TICFVGFGV-DKKTASIHG-KTGYPRNC---DTGIDLGHLAARVLK--K-----PKLIGLTGIAELAKE 145 (198)
Q Consensus 80 ~L~~~l~~~--~i~kvG~~i-~~D~~~L~~-~~~~~~~~---~~~~Dl~~la~~~~g--~-----~~l~~~~sL~~l~~~ 145 (198)
.|.+|+..- ..+.|||+. ..|...|.. ...+|+.. ...+|...+++.... . |.. ...+|..++++
T Consensus 102 ~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~-~~~~L~~l~~~ 180 (238)
T 1y97_A 102 TLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGR-QGYSLGSLFHR 180 (238)
T ss_dssp HHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC-----------CCSHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCC-CCCCHHHHHHH
Confidence 467777752 267899998 999998831 11234443 358997777765541 0 222 46799999997
Q ss_pred h-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 146 V-GIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 146 ~-g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
+ |+ ... +-+-|..||.++..++.++.+.+
T Consensus 181 ~~gi-----~~~------------------~~H~Al~Da~~ta~l~~~l~~~~ 210 (238)
T 1y97_A 181 YFRA-----EPS------------------AAHSAEGDVHTLLLIFLHRAAEL 210 (238)
T ss_dssp HHSS-----CCC---------------------CHHHHHHHHHHHHHHTHHHH
T ss_pred HhCC-----CCc------------------cCccHHHHHHHHHHHHHHHHHHH
Confidence 5 87 321 24779999999999999887643
No 22
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=93.02 E-value=0.92 Score=42.68 Aligned_cols=146 Identities=12% Similarity=0.179 Sum_probs=83.2
Q ss_pred CeEEEEeeeeccCC----CceeEEEeee--CCeEEEEEcccc--------CC---chHHHHhhc--cCCCeEEEEeeec-
Q 039658 39 RRVVGFDVKFNSQT----RIAEMLILSA--ANLCLAIQLCRL--------SR---IPESVTNFL--ADRTICFVGFGVD- 98 (198)
Q Consensus 39 ~~vvg~D~Ew~~~~----~~~aliQla~--~~~~~l~~l~~~--------~~---~p~~L~~~l--~~~~i~kvG~~i~- 98 (198)
..++.||.|-.... ..=.++||+. .+..-++..... +. +-..+.+++ .||+| .+||++.
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPDi-ivGyN~~~ 213 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDV-LITYNGDN 213 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCSE-EEESSTTT
T ss_pred cEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCCE-EEEeCCCC
Confidence 58999999987532 1223556553 332223221111 11 112334444 36885 6999985
Q ss_pred chHhhchhc-CCCCCc------------------------cCceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCC
Q 039658 99 KKTASIHGK-TGYPRN------------------------CDTGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNS 152 (198)
Q Consensus 99 ~D~~~L~~~-~~~~~~------------------------~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~ 152 (198)
.|+-.|..+ ..+|+. -...+|+-.++++....+ ..+|..+++.+ |....
T Consensus 214 FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~----sysL~~Va~~~Lg~~K~- 288 (775)
T 1qht_A 214 FDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLP----TYTLEAVYEAVFGKPKE- 288 (775)
T ss_dssp THHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCS----CCCHHHHHHHHHCCCCC-
T ss_pred ccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcC----cCCHHHHHHHHhCCCCC-
Confidence 688766321 112222 124679888877655444 67999999988 87111
Q ss_pred CCCCCCCCCCCC-CCCCCCCCHHHHHHHHHhHHHHHHHHHHHH
Q 039658 153 LSNKEIEAVTPP-NWNAWVFTDKQVLHAVEEARGCYIVADKLL 194 (198)
Q Consensus 153 ~~l~K~~~~~~S-dW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~ 194 (198)
.++ .. ... -|...+--..-+.|...||...+.|+.++.
T Consensus 289 -dv~--~~-~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 289 -KVY--AE-EIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp -CCC--HH-HHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccC--HH-HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111 00 112 344443225668999999999999988764
No 23
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=92.90 E-value=1.1 Score=35.27 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=74.8
Q ss_pred CeEEEEeeeeccCC---CceeEEEeee----CC--eEE-----EEEccccCCch------------------------HH
Q 039658 39 RRVVGFDVKFNSQT---RIAEMLILSA----AN--LCL-----AIQLCRLSRIP------------------------ES 80 (198)
Q Consensus 39 ~~vvg~D~Ew~~~~---~~~aliQla~----~~--~~~-----l~~l~~~~~~p------------------------~~ 80 (198)
..++.||+|..... .+-.+|||+. .+ .+. +++......+| +.
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~~ 110 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER 110 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHHH
Confidence 46899999998654 2247888875 22 221 22221100111 12
Q ss_pred HHhhccCC-------CeEEEEeeecchHhh-ch-hcCCCCCcc----CceeehHHHHHHHhCCCCCCCCccHHHHHHHhC
Q 039658 81 VTNFLADR-------TICFVGFGVDKKTAS-IH-GKTGYPRNC----DTGIDLGHLAARVLKKPKLIGLTGIAELAKEVG 147 (198)
Q Consensus 81 L~~~l~~~-------~i~kvG~~i~~D~~~-L~-~~~~~~~~~----~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g 147 (198)
+.+++.+. ..+++++| ..|+.. |. ..+.+|+.. ...+|++.......+.. ...+|..|++.+|
T Consensus 111 f~~~l~~~~lv~hn~~~~~~t~g-~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~---p~~~L~~l~~~~g 186 (224)
T 2xri_A 111 VDEWMAKEGLLDPNVKSIFVTCG-DWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCW---PKNGLLDMNKGLS 186 (224)
T ss_dssp HHHHHHHTTTTSTTSCEEEEESS-SHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSC---CTTTHHHHHHHTT
T ss_pred HHHHHhhcccccCCCceEEEEeC-hhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccC---CCCCHHHHHHHcC
Confidence 45556543 23334443 889885 51 112234432 37899876554333321 2468999998777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHh
Q 039658 148 IDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLS 195 (198)
Q Consensus 148 ~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~ 195 (198)
+ +... +-+-|..||..+..|+.+|.+
T Consensus 187 i-----~~~~-----------------~~H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 187 L-----QHIG-----------------RPHSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp C-----CCCS-----------------CTTCHHHHHHHHHHHHHHHHH
T ss_pred C-----CCCC-----------------CCcChHHHHHHHHHHHHHHHH
Confidence 6 3311 124488999999999999875
No 24
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=91.77 E-value=0.79 Score=37.93 Aligned_cols=92 Identities=9% Similarity=0.052 Sum_probs=63.2
Q ss_pred HHhhccCC-----CeEEEEeeecchHh-hchh-cCCCCCcc----CceeehHHHHHHHhCCCCCCCCccHHHHHHHhCCC
Q 039658 81 VTNFLADR-----TICFVGFGVDKKTA-SIHG-KTGYPRNC----DTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGID 149 (198)
Q Consensus 81 L~~~l~~~-----~i~kvG~~i~~D~~-~L~~-~~~~~~~~----~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g~~ 149 (198)
|.+|+.+. ..+.|||+...|.. .|.. ...+|+.. ...+|+..++....|.+. ...+|..|++.+|+
T Consensus 160 f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~--~~~~L~~l~~~~gi- 236 (299)
T 1zbh_A 160 VIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR--SQTKLTIMLEKLGM- 236 (299)
T ss_dssp HHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG--GGCSHHHHHHHTTC-
T ss_pred HHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCC--CCccHHHHHHHcCC-
Confidence 55666653 24689999999998 7721 12245443 268999888776666552 24799999988777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhh
Q 039658 150 HNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSL 196 (198)
Q Consensus 150 ~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~ 196 (198)
.... +-+-|..||.++..|+.++.+.
T Consensus 237 ----~~~g-----------------~~H~Al~DA~ata~l~~~l~~~ 262 (299)
T 1zbh_A 237 ----DYDG-----------------RPNCGLDDSKNIARIAVRMLQD 262 (299)
T ss_dssp ----CCCS-----------------CTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----CCCC-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 3321 1144789999999999998765
No 25
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=90.98 E-value=1 Score=38.32 Aligned_cols=92 Identities=9% Similarity=0.056 Sum_probs=63.4
Q ss_pred HHhhccCC-----CeEEEEeeecchHh-hchh-cCCCCCcc----CceeehHHHHHHHhCCCCCCCCccHHHHHHHhCCC
Q 039658 81 VTNFLADR-----TICFVGFGVDKKTA-SIHG-KTGYPRNC----DTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGID 149 (198)
Q Consensus 81 L~~~l~~~-----~i~kvG~~i~~D~~-~L~~-~~~~~~~~----~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g~~ 149 (198)
|.+|+.+. ..+.|||+...|+. .|.. ...+|+.. ..++|+..++...++.+. ...+|..|++.+|+
T Consensus 210 f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~--~~~~L~~l~~~~gi- 286 (349)
T 1zbu_A 210 VIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR--SQTKLTIMLEKLGM- 286 (349)
T ss_dssp HHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG--GGGSHHHHHHHTTC-
T ss_pred HHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCC--CCCCHHHHHHHcCC-
Confidence 45566553 14689999999998 7721 12245442 368999888776666552 24799999988777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhh
Q 039658 150 HNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSL 196 (198)
Q Consensus 150 ~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~ 196 (198)
.... +-+-|..||.++..|+.++.+.
T Consensus 287 ----~~~g-----------------~~HrAl~DA~ata~ll~~ll~~ 312 (349)
T 1zbu_A 287 ----DYDG-----------------RPHCGLDDSKNIARIAVRMLQD 312 (349)
T ss_dssp ----CCCS-----------------CTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----CCCC-----------------CCCCHHHHHHHHHHHHHHHHHh
Confidence 4321 1144789999999999998765
No 26
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=90.76 E-value=0.9 Score=38.23 Aligned_cols=94 Identities=7% Similarity=-0.007 Sum_probs=60.5
Q ss_pred HHHhhccC--CCeEEEEee-ecchHhhchh-cCCCCCcc----CceeehHHHHHHHhC--CCCC---CCCccHHHHHHHh
Q 039658 80 SVTNFLAD--RTICFVGFG-VDKKTASIHG-KTGYPRNC----DTGIDLGHLAARVLK--KPKL---IGLTGIAELAKEV 146 (198)
Q Consensus 80 ~L~~~l~~--~~i~kvG~~-i~~D~~~L~~-~~~~~~~~----~~~~Dl~~la~~~~g--~~~l---~~~~sL~~l~~~~ 146 (198)
.|.+|+.+ +..+.|||+ +..|...|.. ...+|+.. ..++|.-.+++.... .|.. ..+.+|..+++.+
T Consensus 107 ~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l 186 (314)
T 3u3y_B 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186 (314)
T ss_dssp HHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHh
Confidence 35667765 337889999 8999999832 12345543 247887665442211 1210 1467999999996
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhh
Q 039658 147 -GIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSL 196 (198)
Q Consensus 147 -g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~ 196 (198)
|+ ..... +=|..||.++.+|+.++.+.
T Consensus 187 ~gi-----~~~~a------------------HrAl~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 187 YWQ-----APTDS------------------HTAEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp HSS-----CCSCS------------------SSHHHHHHHHHHHHHSSHHH
T ss_pred cCC-----CCCCC------------------CCHHHHHHHHHHHHHHHHHH
Confidence 88 44221 23789999999999887654
No 27
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=85.15 E-value=0.65 Score=45.17 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=61.6
Q ss_pred eEEEEeeecchHhhchhcCCCCCccC--ceeehHHHHHHHhC---------------C--------------------C-
Q 039658 90 ICFVGFGVDKKTASIHGKTGYPRNCD--TGIDLGHLAARVLK---------------K--------------------P- 131 (198)
Q Consensus 90 i~kvG~~i~~D~~~L~~~~~~~~~~~--~~~Dl~~la~~~~g---------------~--------------------~- 131 (198)
=+.|||++..|-.++ .+.|.++.. .++|.-.+.....| . |
T Consensus 195 rlIVGHNVsyDRARI--~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~ 272 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHI--REQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPA 272 (1172)
T ss_dssp CCCBCBCSSSSTTGG--GTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-----------------------
T ss_pred cEEEeCCcchhHHHH--HHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcc
Confidence 356999999999999 899988764 46775443221111 0 1
Q ss_pred ----CC---CCCc--cHHHHHHHh-CCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHhHHHHHHHHHHHHh
Q 039658 132 ----KL---IGLT--GIAELAKEV-GIDHNSLSNKEIEAVTPPNWNAWVFT---DKQVLHAVEEARGCYIVADKLLS 195 (198)
Q Consensus 132 ----~l---~~~~--sL~~l~~~~-g~~~~~~~l~K~~~~~~SdW~~~pLt---~~Qi~YAA~Da~~~~~i~~~L~~ 195 (198)
.+ .+.. ||++.++.+ |.+ .++|..+--...-...... .+-+.|.|.|+.+...||.++.-
T Consensus 273 ~~~~~W~~~sS~N~~SL~dV~~lhcg~~----~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P 345 (1172)
T 3ikm_A 273 ISSWDWLDISSVNSNSLAEVHRLYVGGP----PLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLP 345 (1172)
T ss_dssp ---CCCCCCCCTTSHHHHHHHTCSSCSC----S--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccccCCCcCCHHHHHHHhCCCc----ccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 01 1234 788888777 632 7887644333333322221 13378999999999999999864
No 28
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=73.09 E-value=64 Score=30.49 Aligned_cols=140 Identities=13% Similarity=0.095 Sum_probs=79.6
Q ss_pred CeEEEEeeee-ccC---C-Cc----eeEEEeeeC--C---eEEEEEcccc---------------C---CchHHHHhhcc
Q 039658 39 RRVVGFDVKF-NSQ---T-RI----AEMLILSAA--N---LCLAIQLCRL---------------S---RIPESVTNFLA 86 (198)
Q Consensus 39 ~~vvg~D~Ew-~~~---~-~~----~aliQla~~--~---~~~l~~l~~~---------------~---~~p~~L~~~l~ 86 (198)
..+++||.|- .+. + ++ --+|||+.- + .++++..+.. + .+-..+.+++.
T Consensus 190 l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~~~~~~~~~~~~~~~i~~~~v~~~~~E~~LL~~f~~~i~ 269 (847)
T 1s5j_A 190 IKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEYELLGRFFDILL 269 (847)
T ss_dssp CCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCEEETTEEEEEESSHHHHHHHHHHHHT
T ss_pred ceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEEEEEeCCcccccccCCCCCeEEEeCCHHHHHHHHHHHhc
Confidence 6889999999 422 2 22 357777752 1 3555432210 1 12235667777
Q ss_pred CCCeEEEEeeec-chHhhchh-cCCCCCc-------c----------CceeehHHHHHHH------hCCCCCCCCccHHH
Q 039658 87 DRTICFVGFGVD-KKTASIHG-KTGYPRN-------C----------DTGIDLGHLAARV------LKKPKLIGLTGIAE 141 (198)
Q Consensus 87 ~~~i~kvG~~i~-~D~~~L~~-~~~~~~~-------~----------~~~~Dl~~la~~~------~g~~~l~~~~sL~~ 141 (198)
++. +.+||++. .|+-.|.. ...+|+. . .-.+|+-..++.. ++ .++ ...+|..
T Consensus 270 ~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~-~kl-~sysL~~ 346 (847)
T 1s5j_A 270 EYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFE-GKY-NEYNLDA 346 (847)
T ss_dssp TCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTST-TCC-SSCSHHH
T ss_pred cCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccc-ccc-ccccHHH
Confidence 777 68999985 69887742 1233332 1 2356776554321 11 112 4679999
Q ss_pred HHHHh-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHH
Q 039658 142 LAKEV-GIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVAD 191 (198)
Q Consensus 142 l~~~~-g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~ 191 (198)
+|+.+ |.. |. .+ .+.|.. .--..-+.|.-.||...+.|+.
T Consensus 347 Va~~~Lg~~-------K~-dv-~~~i~~-~~~~~l~~Ycl~Da~lt~~L~~ 387 (847)
T 1s5j_A 347 VAKALLGTS-------KV-KV-DTLISF-LDVEKLIEYNFRDAEITLQLTT 387 (847)
T ss_dssp HHHHHHCCC-------CC----SSCTTT-CCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCC-------Cc-ch-hHhhhh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999 871 11 11 123322 1123458999999999999853
No 29
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=72.33 E-value=2.9 Score=34.73 Aligned_cols=93 Identities=10% Similarity=0.092 Sum_probs=56.1
Q ss_pred HHhhccCC-----CeEEEEeeecchH-hhchh-cCCCCCcc----CceeehHHHHHHHhCCCC---CCCCccHHHHHHHh
Q 039658 81 VTNFLADR-----TICFVGFGVDKKT-ASIHG-KTGYPRNC----DTGIDLGHLAARVLKKPK---LIGLTGIAELAKEV 146 (198)
Q Consensus 81 L~~~l~~~-----~i~kvG~~i~~D~-~~L~~-~~~~~~~~----~~~~Dl~~la~~~~g~~~---l~~~~sL~~l~~~~ 146 (198)
|.+|+.+. +++++++| ..|+ ..|.. .+.+|+.. .+.+|+..++++.++... .....+|..+++.+
T Consensus 102 f~~~l~~~~lvahn~~lv~~g-~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~ 180 (308)
T 3cg7_A 102 FQQWLITLGLEEGKFAFVCDS-RQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYY 180 (308)
T ss_dssp HHHHHHHHCCCTTSEEEEESS-SHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHT
T ss_pred HHHHHHhCCcCCcceEEeccC-cccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHHHHHc
Confidence 44556542 23444443 7898 45621 12345443 368999888876554221 00256899999777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhh
Q 039658 147 GIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSL 196 (198)
Q Consensus 147 g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~ 196 (198)
|+ ..... -+-|..||.+...|+.++.+.
T Consensus 181 gi-----~~~~~-----------------~HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 181 DL-----PTIGR-----------------AHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp TC-----CCCSC-----------------TTCHHHHHHHHHHHHHHHHHT
T ss_pred CC-----CCCCC-----------------CcCHHHHHHHHHHHHHHHHHc
Confidence 77 43211 134789999999999998764
No 30
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=68.95 E-value=32 Score=32.96 Aligned_cols=174 Identities=9% Similarity=0.069 Sum_probs=100.5
Q ss_pred CeEEEEEEeCCHHHHHHHHHHHHhh-h-----------------cc-------CCeEEEEeeeeccCC---------Cce
Q 039658 10 DVKFKVSVIDDADVIDKKISELSGM-L-----------------FK-------MRRVVGFDVKFNSQT---------RIA 55 (198)
Q Consensus 10 ~~~i~v~v~~~~~~~~~~i~~l~~~-~-----------------~~-------~~~vvg~D~Ew~~~~---------~~~ 55 (198)
|+-+.-.--.+..++++|+++.... . ++ ...++.||.|-.... .++
T Consensus 54 g~~~~~~~f~~~~~~~~~~k~~~~~~~~~~g~~~~~~qy~~~~~~~~i~~~~~~ir~~~~DIEv~~~~~fPd~~~~~~~I 133 (903)
T 3qex_A 54 GKPCTRKLFANMRDASQWIKRMEDIGLEALGMDDFKLAYLSDTYNYEIKYDHTKIRVANFDIEVTSPDGFPEPSQAKHPI 133 (903)
T ss_dssp SCEEEEEECSSHHHHHHHHHHHHHHTCCCBSCCSHHHHHHHHHCCSCCCCCGGGSCEEEEEEECCCTTSSCCTTTCCSCC
T ss_pred CCcccccCCCCHHHHHHHHHHhhccCcccccCcHHHHHHHHHHcccccccCcccccEEEEeEEeCCCCCCCCcccCCCCE
Confidence 3333333445677888888887655 1 11 168999999964322 568
Q ss_pred eEEEeee--CCeEEEEEcccc-----------------------------CC-----------chHHHHhhcc--CCCeE
Q 039658 56 EMLILSA--ANLCLAIQLCRL-----------------------------SR-----------IPESVTNFLA--DRTIC 91 (198)
Q Consensus 56 aliQla~--~~~~~l~~l~~~-----------------------------~~-----------~p~~L~~~l~--~~~i~ 91 (198)
-.|+++. +++.+++.+.+. +. +-..+.+++. ||+|+
T Consensus 134 i~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~f~sE~eLL~~F~~~I~~~DPDII 213 (903)
T 3qex_A 134 DAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVIL 213 (903)
T ss_dssp CEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTEEEEEESSHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCeEEEEcCCHHHHHHHHHHHHHHhCCCEE
Confidence 8888887 456666544320 00 1122344443 78876
Q ss_pred EEEeeec-chHhhchhc-------------CCCCC----------------cc--CceeehHHHHHHHhCCCCCCCCccH
Q 039658 92 FVGFGVD-KKTASIHGK-------------TGYPR----------------NC--DTGIDLGHLAARVLKKPKLIGLTGI 139 (198)
Q Consensus 92 kvG~~i~-~D~~~L~~~-------------~~~~~----------------~~--~~~~Dl~~la~~~~g~~~l~~~~sL 139 (198)
+||++. .|+..|..+ ..+|. .+ .-.+|+=.++++ .....+ ...+|
T Consensus 214 -tGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~GRv~lDl~~~~k~-~~~~~l-~SYsL 290 (903)
T 3qex_A 214 -TGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKK-FSFTNQ-PSYSL 290 (903)
T ss_dssp -ECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETTCEECCHHHHHHH-HSCCCC-SCCCH
T ss_pred -EecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEeCeEEeeHHHHHHH-hCccCc-CCCCH
Confidence 699995 577555210 01121 11 226787666653 222222 46789
Q ss_pred HHHHHHh-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q 039658 140 AELAKEV-GIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKL 193 (198)
Q Consensus 140 ~~l~~~~-g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L 193 (198)
..+|+.+ |.... .++ . ..+.|.... ...-+.|.-.||...+.|+.++
T Consensus 291 d~VA~~lLg~~K~--d~~--~--~I~~~~~~d-~~~L~~Ycl~Da~Lt~~L~~Kl 338 (903)
T 3qex_A 291 DYISEFELNVGKL--KYD--G--PISKLRESN-HQRYISYNIIAVYRVLQIDAKR 338 (903)
T ss_dssp HHHHHHHHCCCCC--CCS--S--CGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcc--ccH--H--HHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 87211 222 1 334453311 1244899999999999999883
No 31
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=67.45 E-value=31 Score=31.12 Aligned_cols=140 Identities=6% Similarity=-0.120 Sum_probs=73.5
Q ss_pred CeEEEEeeeeccCC--CceeEEEeeeCCeEEEEEccccCCchHHHHhhccCCCeEEEEeeecchHhhchhc-CCCC----
Q 039658 39 RRVVGFDVKFNSQT--RIAEMLILSAANLCLAIQLCRLSRIPESVTNFLADRTICFVGFGVDKKTASIHGK-TGYP---- 111 (198)
Q Consensus 39 ~~vvg~D~Ew~~~~--~~~aliQla~~~~~~l~~l~~~~~~p~~L~~~l~~~~i~kvG~~i~~D~~~L~~~-~~~~---- 111 (198)
.++++||+|-.++. +++-.+-+.+++.+-.+-.. ..+-+.+. .+.+.+...++|+++-|...|... ...|
T Consensus 6 ~~i~~~D~Et~~d~~~~~~~~i~~~~~~~~~~~~~~--~~l~~fi~-~~~~~~~~i~~hNl~FD~~~l~~~~~~~~~~~~ 82 (575)
T 2py5_A 6 RKMYSCAFETTTKVEDCRVWAYGYMNIEDHSEYKIG--NSLDEFMA-WVLKVQADLYFHNLKFAGAFIINWLERNGFKWS 82 (575)
T ss_dssp CCEEEEEEEECCBTTBCCEEEEEEEESSCTTCEEEE--SCHHHHHH-HHHHHCCEEEETTHHHHHHHHHHHHHHTTCEEC
T ss_pred ceEEEEEEEeecCCCCCceEEEEEEeCCceEEEEec--hhHHHHHH-HHHHcCCEEEEEChhhhHHHHHHHHHHhCcccc
Confidence 57999999986554 44444444444321111000 11222223 333344557779999999777310 0111
Q ss_pred ---C--c----c--C-c----------------eeehHHHHHHHhCCCCCCCCccHHHHHHHhCCCCCCCCCCCCCCCCC
Q 039658 112 ---R--N----C--D-T----------------GIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDHNSLSNKEIEAVTP 163 (198)
Q Consensus 112 ---~--~----~--~-~----------------~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g~~~~~~~l~K~~~~~~ 163 (198)
+ . + . . .+|+.+-.+ . -..||+.+++.++.+...-.++ -..++.
T Consensus 83 ~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~-~-------~~~SL~~~a~~f~~~~~K~~~p-y~~~~~ 153 (575)
T 2py5_A 83 ADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLK-K-------LPFPVKKIAKDFKLTVLKGDID-YHKERP 153 (575)
T ss_dssp TTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHH-H-------SCSCHHHHHHHTTCCCCSSCCC-TTSCCC
T ss_pred cccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHh-h-------hhhhHHHHHHHhCCcccCCccC-ccccCc
Confidence 1 0 0 0 0 123322222 1 1359999999984411000011 011222
Q ss_pred CCCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q 039658 164 PNWNAWVFTDKQVLHAVEEARGCYIVADKL 193 (198)
Q Consensus 164 SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L 193 (198)
-+| -+.++-+.|+..|+..+..++.+.
T Consensus 154 ~~~---~~~~~~~~Y~~~Dv~ll~~i~~~~ 180 (575)
T 2py5_A 154 VGY---KITPEEYAYIKNDIQIIAEALLIQ 180 (575)
T ss_dssp TTC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344 488999999999999999988765
No 32
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=63.92 E-value=6.4 Score=34.35 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=59.0
Q ss_pred ccCCCeEEEEeeecchHhhchhcCCC-C-Cc-------------cCceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CC
Q 039658 85 LADRTICFVGFGVDKKTASIHGKTGY-P-RN-------------CDTGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GI 148 (198)
Q Consensus 85 l~~~~i~kvG~~i~~D~~~L~~~~~~-~-~~-------------~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~ 148 (198)
|...+-..|||++-.|+-.+ .+.| | +. ...++|+..++. ...........||..|.+.+ ..
T Consensus 277 L~~s~KpiVGHN~llDl~~l--~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~-~~~~~~~~~~~sL~~l~~~l~~~ 353 (430)
T 2a1r_A 277 IANSGKLVIGHNMLLDVMHT--VHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS-TQPFKDIINNTSLAELEKRLKET 353 (430)
T ss_dssp HHHHCCEEEESSCHHHHHHH--HHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHT-STTTTTTCSCCSHHHHHHHTTST
T ss_pred HHhCCCceEechhHHHHHHH--HHHhccCCCCCHHHHHHHHHHHCCceeehHHhhh-ccchhhccCCCCHHHHHHHHHhC
Confidence 33333346999999999887 4433 1 21 146899766653 22212211457899999887 43
Q ss_pred CCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 149 DHNS--LSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 149 ~~~~--~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
+..+ +..... . .+.+. +.++.+=|+.|||..-.++-+|...|
T Consensus 354 ~~~~p~i~~~~~--~-~~y~~----~~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 354 PFNPPKVESAEG--F-PSYDT----ASEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp TCCCCCEEECTT--C-CCC---------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeecCCC--c-ccccc----CCCCccchHHHHHHHHHHHHHHHHHH
Confidence 1110 111110 0 11121 23566789999999999999988765
No 33
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=61.16 E-value=4 Score=36.44 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=62.4
Q ss_pred HHhhccCCCeEEEEeeecchHhhchhcCCC--CCc-------------cCceeehHHHHHHHhCCCCCCCCccHHHHHHH
Q 039658 81 VTNFLADRTICFVGFGVDKKTASIHGKTGY--PRN-------------CDTGIDLGHLAARVLKKPKLIGLTGIAELAKE 145 (198)
Q Consensus 81 L~~~l~~~~i~kvG~~i~~D~~~L~~~~~~--~~~-------------~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~ 145 (198)
+.+.|.+.+...|||++-.|+-.| .+.| +++ ...++|+..++.. .....+....||..|.+.
T Consensus 268 v~~~L~~~~kpiVgHN~l~Dl~~l--~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~-~~~~~~~~~~~L~~l~~~ 344 (507)
T 3d45_A 268 VIHAIANSGKLVVGHNMLLDVMHT--IHQFYCPLPADLNEFKEMAICVFPRLLDTKLMAST-QPFKDIINNTSLAELEKR 344 (507)
T ss_dssp HHHHHHHHCCEEEESSCHHHHHHH--HHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTS-TTHHHHCCCCCHHHHHHH
T ss_pred HHHHHHhCCCeEEEechHHHHHHH--HHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhc-CccccccCCCCHHHHHHH
Confidence 344555567789999999999888 5432 121 1468998766532 110010035689999998
Q ss_pred h-CCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 146 V-GIDHN--SLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 146 ~-g~~~~--~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
+ ..+.. .+..+. ..+.+. -+..+.+=|+.|||..-.+|-+|...|
T Consensus 345 l~~~~~~~p~i~~~~----~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~~~l 392 (507)
T 3d45_A 345 LKETPFDPPKVESAE----GFPSYD---TASEQLHEAGYDAYITGLCFISMANYL 392 (507)
T ss_dssp TTSTTCCCCCEEECT----TSCCCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCeEEecc----cccccc---cCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 8 43100 011110 111221 123455779999999999999998765
No 34
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=57.37 E-value=15 Score=22.74 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=30.1
Q ss_pred CceeEEEE-CCeE--EEEEEeCCHHHHHHHHHHHHhhhccCCeEEEEeeeeccC
Q 039658 1 MCIYELEI-KDVK--FKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVKFNSQ 51 (198)
Q Consensus 1 ~~~y~v~~-~~~~--i~v~v~~~~~~~~~~i~~l~~~~~~~~~vvg~D~Ew~~~ 51 (198)
|++|.+.+ -|++ ++++-..+.+.+++..+..... =|+|-||.-+
T Consensus 9 mdtyklfivigdrvvvt~tkavdaatAeq~FrqYan~-------NgvdgeWsYD 55 (65)
T 1mhx_A 9 MDTYKLFIVIGDRVVVVTTEAVDAATAEKVFKQYAND-------NGVDGEWTYD 55 (65)
T ss_dssp CEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHH-------TTCCSEEEEE
T ss_pred cceeeEEEEEcCEEEEEEeehhhHHHHHHHHHHHhhc-------cCCccEEEec
Confidence 78887766 3333 3445677888899888887653 2459999754
No 35
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=50.66 E-value=36 Score=28.05 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=58.3
Q ss_pred cCCCeEEEEeeecchHhhchh--c-CCCCCc-----------cCceeehHHHHHHHhCCCC----------CCCCccHHH
Q 039658 86 ADRTICFVGFGVDKKTASIHG--K-TGYPRN-----------CDTGIDLGHLAARVLKKPK----------LIGLTGIAE 141 (198)
Q Consensus 86 ~~~~i~kvG~~i~~D~~~L~~--~-~~~~~~-----------~~~~~Dl~~la~~~~g~~~----------l~~~~sL~~ 141 (198)
.+++|.+|.+.-..|+..|-. . +..+-. ..+++|+..++....+... ...+.||.+
T Consensus 152 l~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 231 (289)
T 1uoc_A 152 MDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTT 231 (289)
T ss_dssp SCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHH
T ss_pred cCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHH
Confidence 467899999999999865511 1 112111 2479999888765432210 013568999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 142 LAKEVGIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 142 l~~~~g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
+|+.+|+ . ++. .-+-|..|++....+|-+|+++.
T Consensus 232 lA~~L~v-----~-----r~g------------~~HqAGsDSllT~~~F~kl~~~~ 265 (289)
T 1uoc_A 232 LADELGL-----P-----RFS------------IFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp HHHHTTC-----C-----CCG------------GGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCC-----C-----ccC------------cccccHHHHHHHHHHHHHHHHHH
Confidence 9999865 1 111 02558999999999999998753
No 36
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=44.62 E-value=46 Score=22.05 Aligned_cols=34 Identities=6% Similarity=-0.044 Sum_probs=27.2
Q ss_pred eeEEEECCeEEEEEEeCCHHHHHHHHHHHHhhhc
Q 039658 3 IYELEIKDVKFKVSVIDDADVIDKKISELSGMLF 36 (198)
Q Consensus 3 ~y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~~~ 36 (198)
.|.|...+.+.....++++++.++|++.|.....
T Consensus 68 ~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~~ 101 (107)
T 2cof_A 68 SFRILHKGEELAKLEAKSSEEMGHWLGLLLSESG 101 (107)
T ss_dssp EEEEEETTEEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred EEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 3566667677777889999999999999987543
No 37
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=44.58 E-value=35 Score=28.16 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhccCCeEEEEeeeecc
Q 039658 25 DKKISELSGMLFKMRRVVGFDVKFNS 50 (198)
Q Consensus 25 ~~~i~~l~~~~~~~~~vvg~D~Ew~~ 50 (198)
++-+..++...++ ...|++|+|+..
T Consensus 25 ~~e~~~I~~~i~~-~~fVAmDtEFpG 49 (289)
T 1uoc_A 25 YSEFAVIRQLVSQ-YNHVSISTEFVG 49 (289)
T ss_dssp HHHHHHHHHHTTT-SCEEEEEEEEEC
T ss_pred HHHHHHHHHHHhh-CCEEEEEeeecc
Confidence 3334444433333 899999999964
No 38
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=41.34 E-value=49 Score=21.53 Aligned_cols=32 Identities=16% Similarity=-0.004 Sum_probs=25.7
Q ss_pred eeEEEECCeEEEEEEeCCHHHHHHHHHHHHhh
Q 039658 3 IYELEIKDVKFKVSVIDDADVIDKKISELSGM 34 (198)
Q Consensus 3 ~y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~ 34 (198)
.|.|...+.......++|+++.++|++.|...
T Consensus 60 ~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 91 (103)
T 3rcp_A 60 RMELIIPGEQHFYMKAVNAAERQRWLVALGSS 91 (103)
T ss_dssp EEEEEETTTEEEEEECSSHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 45666666667777899999999999999874
No 39
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=40.22 E-value=75 Score=25.53 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=57.3
Q ss_pred ccCCCeEEEEeeecchHhhchh--c-CCCCCc-----------cCceeehHHHHHHHhCCCCCCCCccHHHHHHHhCCCC
Q 039658 85 LADRTICFVGFGVDKKTASIHG--K-TGYPRN-----------CDTGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDH 150 (198)
Q Consensus 85 l~~~~i~kvG~~i~~D~~~L~~--~-~~~~~~-----------~~~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g~~~ 150 (198)
..+++|.+|.+.-..|+..|-. . +..|-. ..+++|+..++... . .+ +.||..+++.+|+.
T Consensus 136 vl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~-~--~l--~~gL~~la~~L~v~- 209 (252)
T 2d5r_A 136 VLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSC-K--NL--KGGLQEVAEQLELE- 209 (252)
T ss_dssp SSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGC-T--TC--CSSHHHHHHHHTCC-
T ss_pred ccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHh-c--cc--CCCHHHHHHHcCCC-
Confidence 3467899999999999876621 0 122211 13789988776533 2 22 56899999988550
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHhhh
Q 039658 151 NSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLSLL 197 (198)
Q Consensus 151 ~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~~l 197 (198)
+..+ -+=|+.|++....+|-+|++..
T Consensus 210 ---r~g~------------------~HqAGsDsllT~~~F~km~~~~ 235 (252)
T 2d5r_A 210 ---RIGP------------------QHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp ---CCSS------------------TTSHHHHHHHHHHHHHHHHHHT
T ss_pred ---ccCc------------------ccchhhhHHHHHHHHHHHHHHh
Confidence 2211 2358999999999999998753
No 40
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=39.79 E-value=66 Score=21.16 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=26.3
Q ss_pred eeEEEECCeEEEEEEeCCHHHHHHHHHHHHhhh
Q 039658 3 IYELEIKDVKFKVSVIDDADVIDKKISELSGML 35 (198)
Q Consensus 3 ~y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~~ 35 (198)
.|.|...+.......++++++.++|++.|....
T Consensus 70 ~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~ 102 (109)
T 1wgq_A 70 VFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGT 102 (109)
T ss_dssp EEEEEETTEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 456666777767778999999999999998653
No 41
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=39.64 E-value=36 Score=27.43 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=11.1
Q ss_pred CeEEEEeeeeccC
Q 039658 39 RRVVGFDVKFNSQ 51 (198)
Q Consensus 39 ~~vvg~D~Ew~~~ 51 (198)
...|++|+|+..-
T Consensus 24 ~~fvAmDtEFpGv 36 (252)
T 2d5r_A 24 YNYVAMDTEFPGV 36 (252)
T ss_dssp CCEEEEEEECCCC
T ss_pred CCEEEEEeeecce
Confidence 8999999998643
No 42
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.70 E-value=51 Score=22.85 Aligned_cols=33 Identities=6% Similarity=-0.067 Sum_probs=24.9
Q ss_pred eeEEEECCeEEEEEEeCCHHHHHHHHHHHHhhh
Q 039658 3 IYELEIKDVKFKVSVIDDADVIDKKISELSGML 35 (198)
Q Consensus 3 ~y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~~ 35 (198)
.|.|...+.+.....++++++.++|++.|....
T Consensus 81 ~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~ 113 (130)
T 2d9v_A 81 LLTVNLREGSRLHLCAETRDDAIAWKTALMEAN 113 (130)
T ss_dssp EEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 466766444455668899999999999998753
No 43
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=33.48 E-value=42 Score=28.44 Aligned_cols=67 Identities=6% Similarity=-0.035 Sum_probs=42.8
Q ss_pred eeehHHHHHHH-hCCCCCCCCccHHHHHHHh-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q 039658 117 GIDLGHLAARV-LKKPKLIGLTGIAELAKEV-GIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKL 193 (198)
Q Consensus 117 ~~Dl~~la~~~-~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L 193 (198)
.+|+-.++++. .. .+ ...+|..+|+++ |.. ..+-++ +...|.+ .=...-+.|...||...+.|+.++
T Consensus 267 ~lD~~~~~k~~~~~--~l-~sysL~~Va~~~Lg~~----K~d~~~--~i~~~~~-~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 267 ILDYLDLYKKFAFT--NL-PSFSLESVAQHETKKG----KLPYDG--PINKLRE-TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp ECCHHHHHHHHTCC--CC-SCCSHHHHHHHHHSCC----CCCCSS--CGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEHHHHHhhcCcC--cc-cCCCHHHHHHHHhCCC----CCCcHH--HHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67887777652 33 12 477999999988 862 111111 2333322 112355899999999999999985
No 44
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=32.81 E-value=57 Score=22.06 Aligned_cols=34 Identities=6% Similarity=0.069 Sum_probs=25.1
Q ss_pred eeEEEECCeEEEEEEeCCHHHHHHHHHHHHhhhc
Q 039658 3 IYELEIKDVKFKVSVIDDADVIDKKISELSGMLF 36 (198)
Q Consensus 3 ~y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~~~ 36 (198)
.|.|.+.+.....--++|++++++|++.|.....
T Consensus 68 ~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~~ 101 (112)
T 3cxb_B 68 AFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 101 (112)
T ss_dssp EEEEEETTSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 3566665555555678899999999999987543
No 45
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=32.75 E-value=82 Score=20.76 Aligned_cols=33 Identities=3% Similarity=0.070 Sum_probs=25.6
Q ss_pred eeEEEECCeEEEEEEeCCHHHHHHHHHHHHhhh
Q 039658 3 IYELEIKDVKFKVSVIDDADVIDKKISELSGML 35 (198)
Q Consensus 3 ~y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~~ 35 (198)
.|.|...+.+.....++|+++.++|++.|....
T Consensus 68 ~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~ 100 (113)
T 1pls_A 68 VFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100 (113)
T ss_dssp EEEEEETTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 356666665666678999999999999998653
No 46
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=29.00 E-value=1.2e+02 Score=21.30 Aligned_cols=36 Identities=6% Similarity=0.208 Sum_probs=25.8
Q ss_pred CCeEEEEEccccC-CchHHHH-hhccCCCeEEEEeeec
Q 039658 63 ANLCLAIQLCRLS-RIPESVT-NFLADRTICFVGFGVD 98 (198)
Q Consensus 63 ~~~~~l~~l~~~~-~~p~~L~-~~l~~~~i~kvG~~i~ 98 (198)
...+..|.+..-+ .+...|+ .++.||+|.|+|+.+-
T Consensus 19 ~~n~~~f~i~~EDHTLgNlLr~~Llkdp~V~fAgY~vp 56 (115)
T 1xpp_A 19 EKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIK 56 (115)
T ss_dssp CSSEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHhcCCCeEEEEeecC
Confidence 4567777666544 3555665 6779999999999984
No 47
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.84 E-value=74 Score=20.99 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=24.0
Q ss_pred eEEEECCeEEEEEEeCCHHHHHHHHHHHHhhh
Q 039658 4 YELEIKDVKFKVSVIDDADVIDKKISELSGML 35 (198)
Q Consensus 4 y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~~ 35 (198)
|.|...+.......++++++.++|++.|....
T Consensus 77 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~ 108 (117)
T 2d9y_A 77 FKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108 (117)
T ss_dssp EEEECSSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 44544555566677899999999999998754
No 48
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=26.43 E-value=81 Score=22.34 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=29.7
Q ss_pred ceeEEEeeeCCeEEEEEccccC-CchHHHH-hhccCCCeEEEEeeec
Q 039658 54 IAEMLILSAANLCLAIQLCRLS-RIPESVT-NFLADRTICFVGFGVD 98 (198)
Q Consensus 54 ~~aliQla~~~~~~l~~l~~~~-~~p~~L~-~~l~~~~i~kvG~~i~ 98 (198)
++.+.-..-...+..|.+..-+ .+...|+ .++.||+|.++|+.+-
T Consensus 18 K~~~~~~~k~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vp 64 (120)
T 1twf_K 18 KLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVE 64 (120)
T ss_dssp SCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred eEEEEeccCCCCeEEEEEeCCCchHHHHHHHHHhhCCCeeEEeeecC
Confidence 4444444444567777776544 3555665 6779999999999984
No 49
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.11 E-value=74 Score=22.33 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=25.6
Q ss_pred eeEEEECCeEEEEEEeCCHHHHHHHHHHHHhhh
Q 039658 3 IYELEIKDVKFKVSVIDDADVIDKKISELSGML 35 (198)
Q Consensus 3 ~y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~~ 35 (198)
.|.|...+.+.....++++++.++|+..|....
T Consensus 91 ~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai 123 (150)
T 1wg7_A 91 AFELKMQDKSSYLLAADSEVEMEEWITILNKIL 123 (150)
T ss_dssp EEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHH
Confidence 356666655666678899999999999998754
No 50
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=25.05 E-value=77 Score=20.40 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=23.9
Q ss_pred eeEEEECCeEEEEEEeCCHHHHHHHHHHHHhhh
Q 039658 3 IYELEIKDVKFKVSVIDDADVIDKKISELSGML 35 (198)
Q Consensus 3 ~y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~~ 35 (198)
.|.|...+.......++|+++.++|++.+....
T Consensus 72 ~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i 104 (108)
T 1u5d_A 72 CFELTSQDRRTYEFTATSPAEARDWVDQISFLL 104 (108)
T ss_dssp EEEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 345555554555567899999999999998643
No 51
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.31 E-value=86 Score=21.14 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=23.6
Q ss_pred eEEEECCeEEEEEEeCCHHHHHHHHHHHHhhh
Q 039658 4 YELEIKDVKFKVSVIDDADVIDKKISELSGML 35 (198)
Q Consensus 4 y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~~ 35 (198)
|.|...+.....--+++++++++|++.|....
T Consensus 85 F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~ 116 (123)
T 1wjm_A 85 FKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116 (123)
T ss_dssp EEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 45555544455567889999999999998654
No 52
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=23.86 E-value=92 Score=26.17 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred ceeehHHHHHHHhCCCCCCCCccHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHh
Q 039658 116 TGIDLGHLAARVLKKPKLIGLTGIAELAKEVGIDHNSLSNKEIEAVTPPNWNAWVFTDKQVLHAVEEARGCYIVADKLLS 195 (198)
Q Consensus 116 ~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~g~~~~~~~l~K~~~~~~SdW~~~pLt~~Qi~YAA~Da~~~~~i~~~L~~ 195 (198)
.++|+..+++...+... ||..+++.+|+ +++. .-+=|+.|++....+|-+|++
T Consensus 202 ~iYD~K~l~~~~~~l~g-----gL~~lA~~L~v----------~Rig------------~~HqAGsDSlLT~~~F~kl~~ 254 (333)
T 2p51_A 202 KNYDIKYIMKSVLNNSK-----GLQDIADDLQI----------HRIG------------PQHQAGSDALLTARIFFEIRS 254 (333)
T ss_dssp SEEEHHHHHTTTTCCCC-----CHHHHHHHTTC----------CCCS------------CTTSHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhccccC-----CHHHHHHHcCC----------CccC------------cchhhhhHHHHHHHHHHHHHH
Q ss_pred hh
Q 039658 196 LL 197 (198)
Q Consensus 196 ~l 197 (198)
.+
T Consensus 255 ~~ 256 (333)
T 2p51_A 255 RY 256 (333)
T ss_dssp HH
T ss_pred Hh
No 53
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=23.80 E-value=1.4e+02 Score=20.00 Aligned_cols=32 Identities=3% Similarity=0.086 Sum_probs=22.7
Q ss_pred eEEEE---CCeEEEEEEeCCHHHHHHHHHHHHhhh
Q 039658 4 YELEI---KDVKFKVSVIDDADVIDKKISELSGML 35 (198)
Q Consensus 4 y~v~~---~~~~i~v~v~~~~~~~~~~i~~l~~~~ 35 (198)
|.|.. .+....+..++++++.++|++.|....
T Consensus 75 F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~ 109 (125)
T 1unq_A 75 FIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVA 109 (125)
T ss_dssp EEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHH
Confidence 44544 334445567899999999999998653
No 54
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=22.14 E-value=1.6e+02 Score=20.53 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=26.8
Q ss_pred eEEEEEEeCCHHHHHHHHHHHHhhhccCCeEEEEeee
Q 039658 11 VKFKVSVIDDADVIDKKISELSGMLFKMRRVVGFDVK 47 (198)
Q Consensus 11 ~~i~v~v~~~~~~~~~~i~~l~~~~~~~~~vvg~D~E 47 (198)
-=+.|.++++++.+++++..+.....+ ..+.-=|+|
T Consensus 74 lPV~Ie~Vd~~eki~~~l~~l~~~v~~-Glvt~e~V~ 109 (114)
T 1o51_A 74 LPIVLEIVDEEERINLFLKEIDNIDFD-GLVFTADVN 109 (114)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHTCCCC-SEEEEEEEE
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHhCC-CEEEEEEEE
Confidence 357778999999999999999987664 444444444
No 55
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=21.53 E-value=81 Score=30.16 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=43.2
Q ss_pred ceeehHHHHHHHhCCCCCCCCccHHHHHHHh-CCCCCCCCCCCCCCCCCCCCCCC-C-CCHHHHHHHHHhHHHHHHHHHH
Q 039658 116 TGIDLGHLAARVLKKPKLIGLTGIAELAKEV-GIDHNSLSNKEIEAVTPPNWNAW-V-FTDKQVLHAVEEARGCYIVADK 192 (198)
Q Consensus 116 ~~~Dl~~la~~~~g~~~l~~~~sL~~l~~~~-g~~~~~~~l~K~~~~~~SdW~~~-p-Lt~~Qi~YAA~Da~~~~~i~~~ 192 (198)
-.+|+-.++++.+.. ...+|..+|+++ |.... +++- + .+++|... + -...-+.|...||+..+.|+.+
T Consensus 394 ~~lDl~~~~k~~~~l----~sysL~~Va~~~Lg~~K~--dv~~-~--~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~k 464 (919)
T 3iay_A 394 LQLDLLQFIQREYKL----RSYTLNAVSAHFLGEQKE--DVHY-S--IISDLQNGDSETRRRLAVYCLKDAYLPLRLMEK 464 (919)
T ss_dssp EEEEHHHHHHHHCCC----SCCCHHHHHHHHHCCC---------C--CHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHhhcCC----CCCCHHHHHHHhcccCCC--CCCH-H--HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 367887777655433 478999999999 86110 1211 1 23334321 1 1123478999999999999998
Q ss_pred HH
Q 039658 193 LL 194 (198)
Q Consensus 193 L~ 194 (198)
+.
T Consensus 465 l~ 466 (919)
T 3iay_A 465 LM 466 (919)
T ss_dssp TT
T ss_pred Hh
Confidence 73
No 56
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=21.15 E-value=85 Score=21.12 Aligned_cols=31 Identities=3% Similarity=0.068 Sum_probs=22.9
Q ss_pred eEEEECCeEEEEEEeCCHHHHHHHHHHHHhh
Q 039658 4 YELEIKDVKFKVSVIDDADVIDKKISELSGM 34 (198)
Q Consensus 4 y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~ 34 (198)
+.|...+.+.....++++++.++|++.|...
T Consensus 87 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 117 (128)
T 2dkp_A 87 FKAAHPNMRTYYFCTDTGKEMELWMKAMLDA 117 (128)
T ss_dssp EEEECSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 4444444455567888999999999999764
No 57
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=21.12 E-value=1.2e+02 Score=21.22 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=25.8
Q ss_pred eeEEEECCeEEEEEEeCCHHHHHHHHHHHHhhhc
Q 039658 3 IYELEIKDVKFKVSVIDDADVIDKKISELSGMLF 36 (198)
Q Consensus 3 ~y~v~~~~~~i~v~v~~~~~~~~~~i~~l~~~~~ 36 (198)
.|.|...+.+.....+++.++.++|++.|.....
T Consensus 86 ~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~ 119 (148)
T 1u5f_A 86 CFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQ 119 (148)
T ss_dssp EEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3556665555666778999999999999987644
No 58
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=20.41 E-value=57 Score=21.92 Aligned_cols=35 Identities=6% Similarity=0.098 Sum_probs=23.7
Q ss_pred CeEEEEEccccC-CchHHHH-hhccCCCeEEEEeeec
Q 039658 64 NLCLAIQLCRLS-RIPESVT-NFLADRTICFVGFGVD 98 (198)
Q Consensus 64 ~~~~l~~l~~~~-~~p~~L~-~~l~~~~i~kvG~~i~ 98 (198)
+.+..|.+..-+ .+...|+ .++.||+|.++|+.+-
T Consensus 10 ~n~~~f~i~~EDHTLgN~Lr~~L~~~p~V~fagY~vp 46 (92)
T 2pa8_L 10 SNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQP 46 (92)
T ss_dssp TTEEEEEEETCCHHHHHHHHHHHHTSTTEEEEEEECS
T ss_pred CCeEEEEEecCchhHHHHHHHHHhcCCCeeEEEeecC
Confidence 345556555433 3455565 6779999999999974
Done!