Query 039661
Match_columns 597
No_of_seqs 302 out of 987
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 11:55:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 3.7E-89 7.9E-94 692.8 23.5 257 188-451 1-258 (258)
2 KOG4441 Proteins containing BT 99.9 1.2E-24 2.7E-29 244.3 15.3 229 2-309 31-260 (571)
3 PHA02713 hypothetical protein; 99.9 2.8E-24 6.2E-29 240.9 14.5 224 2-307 20-246 (557)
4 PHA02790 Kelch-like protein; P 99.9 3.8E-23 8.3E-28 227.8 10.5 171 3-230 18-195 (480)
5 PHA03098 kelch-like protein; P 99.9 9.4E-22 2E-26 218.1 17.5 219 4-309 6-236 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 2.9E-16 6.4E-21 137.7 9.6 100 4-112 7-109 (111)
7 smart00225 BTB Broad-Complex, 99.6 3.2E-15 7E-20 123.6 7.6 90 9-107 1-90 (90)
8 KOG2075 Topoisomerase TOP1-int 99.2 5.4E-11 1.2E-15 128.4 13.2 176 4-229 111-294 (521)
9 KOG4350 Uncharacterized conser 99.0 2.7E-10 5.8E-15 120.8 5.9 105 2-115 39-146 (620)
10 KOG4591 Uncharacterized conser 98.7 2.1E-08 4.6E-13 98.4 5.5 115 4-139 63-183 (280)
11 KOG4682 Uncharacterized conser 98.4 6.7E-07 1.5E-11 95.5 8.1 119 4-139 66-187 (488)
12 KOG0783 Uncharacterized conser 98.2 2E-06 4.2E-11 98.2 6.3 126 7-151 712-847 (1267)
13 KOG0783 Uncharacterized conser 98.2 2.4E-06 5.3E-11 97.5 6.2 66 6-73 557-633 (1267)
14 PF11822 DUF3342: Domain of un 97.8 3.1E-05 6.6E-10 81.6 6.0 92 10-112 1-102 (317)
15 smart00512 Skp1 Found in Skp1 97.2 0.0011 2.3E-08 59.1 7.0 81 10-93 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 96.7 0.0016 3.6E-08 56.3 3.6 83 10-95 1-88 (94)
17 KOG2716 Polymerase delta-inter 96.2 0.025 5.5E-07 57.7 9.2 94 10-112 7-103 (230)
18 KOG3473 RNA polymerase II tran 95.3 0.076 1.7E-06 47.3 7.6 75 15-92 25-111 (112)
19 PF03931 Skp1_POZ: Skp1 family 94.9 0.13 2.8E-06 41.8 7.3 55 10-70 3-58 (62)
20 KOG2838 Uncharacterized conser 93.2 0.053 1.2E-06 56.3 2.3 67 6-74 129-196 (401)
21 KOG1724 SCF ubiquitin ligase, 93.0 0.36 7.9E-06 46.9 7.6 88 15-112 13-125 (162)
22 KOG2838 Uncharacterized conser 89.6 0.3 6.5E-06 51.0 3.3 57 18-77 262-329 (401)
23 KOG0511 Ankyrin repeat protein 86.3 1.2 2.7E-05 48.5 5.6 76 17-95 301-379 (516)
24 KOG3840 Uncharaterized conserv 73.8 13 0.00028 39.8 7.9 112 2-115 90-222 (438)
25 KOG2714 SETA binding protein S 73.1 11 0.00023 42.1 7.3 88 5-95 7-99 (465)
26 PF04508 Pox_A_type_inc: Viral 70.9 4.6 9.9E-05 27.0 2.4 18 519-536 2-19 (23)
27 PF01466 Skp1: Skp1 family, di 70.0 3.7 8.1E-05 34.8 2.5 32 75-112 10-41 (78)
28 PF07707 BACK: BTB And C-termi 66.1 4.5 9.7E-05 34.7 2.3 40 193-232 35-74 (103)
29 smart00875 BACK BTB And C-term 64.0 13 0.00029 31.2 4.8 38 193-230 35-72 (101)
30 PF08581 Tup_N: Tup N-terminal 62.3 7.7 0.00017 33.5 2.9 29 515-543 36-64 (79)
31 KOG2715 Uncharacterized conser 60.2 29 0.00062 34.3 6.7 97 8-112 21-120 (210)
32 KOG0511 Ankyrin repeat protein 56.5 7.4 0.00016 42.7 2.3 60 6-72 148-210 (516)
33 COG5201 SKP1 SCF ubiquitin lig 56.3 37 0.00081 32.2 6.5 91 10-112 4-120 (158)
34 KOG1665 AFH1-interacting prote 55.4 43 0.00094 34.6 7.3 92 8-108 9-105 (302)
35 PF14077 WD40_alt: Alternative 53.8 7.8 0.00017 30.1 1.4 20 520-539 13-32 (48)
36 PF14363 AAA_assoc: Domain ass 52.3 8.7 0.00019 34.0 1.7 42 404-446 30-71 (98)
37 KOG1987 Speckle-type POZ prote 48.0 8 0.00017 40.1 0.9 88 16-112 109-199 (297)
38 TIGR01834 PHA_synth_III_E poly 38.8 30 0.00064 37.4 3.5 28 519-546 290-317 (320)
39 KOG3713 Voltage-gated K+ chann 36.2 85 0.0018 35.7 6.5 93 8-109 31-135 (477)
40 COG3510 CmcI Cephalosporin hyd 33.3 23 0.0005 35.9 1.5 36 401-436 183-220 (237)
41 PF10932 DUF2783: Protein of u 32.5 42 0.00092 27.6 2.6 23 412-437 10-32 (60)
42 PF13764 E3_UbLigase_R4: E3 ub 30.7 33 0.00071 41.4 2.5 76 322-429 252-335 (802)
43 PF10929 DUF2811: Protein of u 27.1 46 0.00099 27.2 1.9 19 413-431 8-26 (57)
44 PF08172 CASP_C: CASP C termin 26.7 66 0.0014 33.5 3.6 25 520-544 88-112 (248)
45 KOG2016 NEDD8-activating compl 25.5 2E+02 0.0043 32.7 7.1 60 372-431 345-434 (523)
46 PF04977 DivIC: Septum formati 25.4 61 0.0013 26.6 2.5 43 519-561 25-68 (80)
47 PF12029 DUF3516: Domain of un 21.5 48 0.001 37.3 1.4 28 406-433 211-238 (461)
48 KOG3119 Basic region leucine z 20.8 65 0.0014 33.8 2.2 30 519-548 216-245 (269)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=3.7e-89 Score=692.76 Aligned_cols=257 Identities=53% Similarity=0.839 Sum_probs=227.1
Q ss_pred CCccccccccCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 039661 188 DDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMNRQSSFSSGTNYANPGASISSLSEAEQRALLE 267 (597)
Q Consensus 188 ~dWW~EDl~~L~l~lf~rvI~am~~~g~~~e~I~~aL~~Ya~k~lp~l~r~~~~~~~~~~~~~~~~~~~~~~~~qr~lLE 267 (597)
+||||||++.|++++|+|||.+|+++|+++++|+++|++||+||+|++++..... ............+||.+||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~------~~~~~~~~~~~~~~r~llE 74 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGS------SSSAESSTSSENEQRELLE 74 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccc------cccccccchhHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999985542111 1122334567889999999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhhccccccccccccCCCC-CccchHHHHHHHHHHHH
Q 039661 268 EIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKRVGAQLDQASLVDLLIPNMGYI-DTLYDIDCVQRILDHFM 346 (597)
Q Consensus 268 ~Iv~lLp~~~~~vs~~fLf~LLR~a~~l~as~~cr~~LE~rIg~qLd~AtldDLLiPs~~~~-~tlyDvd~V~ril~~Fl 346 (597)
+||+|||.+++++||+|||+|||+|+++++|.+||.+||+|||+|||||||||||||+.+.. +|+||||+|+|||++||
T Consensus 75 tiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl 154 (258)
T PF03000_consen 75 TIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFL 154 (258)
T ss_pred HHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999993333 69999999999999999
Q ss_pred hcccCCCcccccCCCCCCCCCCChhHHHHHHHHHhhhhhhcCCCCCChhhHHHHHHhcCCCCCCCCchhHHHHHHHHHhC
Q 039661 347 SVNLHSSHCIIEEGQPLSGSGSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLASVIPDYARPNDDGIYHAIDIYLKAH 426 (597)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLKaH 426 (597)
.+++........+ ....+.++.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+|
T Consensus 155 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~H 233 (258)
T PF03000_consen 155 SQEEEAGEEEESE-SESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAH 233 (258)
T ss_pred hcccccccccccc-cccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHc
Confidence 9865321111110 001144678899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhhcccccCCCCHHHh
Q 039661 427 PWMTDCEKEQLCRLMDCQKLSLDAC 451 (597)
Q Consensus 427 p~lse~Er~~lC~~mdcqKLS~EAc 451 (597)
|+||++||++||++|||||||+|||
T Consensus 234 p~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 234 PGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred ccCCHHHHHHHHhhCCcccCCcccC
Confidence 9999999999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=1.2e-24 Score=244.28 Aligned_cols=229 Identities=17% Similarity=0.242 Sum_probs=184.8
Q ss_pred CCCCCCeeEEEEECCEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCCcccchhhH
Q 039661 2 CTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNA 81 (597)
Q Consensus 2 ~~~g~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it~~NV 81 (597)
+.++.+|||+|.|++++|++||.|||++|+|||+||++++.| +.+.+|+|++++ +++++++++|+||++++|+.+||
T Consensus 31 r~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e-~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i~~~nV 107 (571)
T KOG4441|consen 31 REEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKE-SKQKEINLEGVD--PETLELLLDYAYTGKLEISEDNV 107 (571)
T ss_pred HHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCccc-ccceEEEEecCC--HHHHHHHHHHhhcceEEechHhH
Confidence 457899999999999999999999999999999999998887 678899999984 79999999999999999999999
Q ss_pred hHHHHhhcccccCccCCCCcHHHHHHHHHHH-hhhchhHHHHHHhhhhhHHHHhhhhchhhhHHHHHHHHHcCCCCCCcC
Q 039661 82 VGLRCAAEYLHMTDDYGEGNLITQTEAFLND-VFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFNW 160 (597)
Q Consensus 82 ~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~-vl~sw~dsi~~L~sC~~Llp~Ae~l~iv~RCidsLA~kac~d~~~~~~ 160 (597)
+.|+.||.+|||++ |++.|+.||.+ +. +.||.++..+|+.++.. ...+..-..+..++..+
T Consensus 108 q~ll~aA~~lQi~~------v~~~C~~fL~~~l~---------~~Nclgi~~~a~~~~~~-~L~~~a~~~i~~~F~~v-- 169 (571)
T KOG4441|consen 108 QELLEAASLLQIPE------VVDACCEFLESQLD---------PSNCLGIRRFAELHSCT-ELLEVADEYILQHFAEV-- 169 (571)
T ss_pred HHHHHHHHHhhhHH------HHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHH--
Confidence 99999999999999 99999999999 74 45777777777766653 11111111223332111
Q ss_pred CCcCCCCccccccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccccccCCC
Q 039661 161 PASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMNRQSS 240 (597)
Q Consensus 161 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~dWW~EDl~~L~l~lf~rvI~am~~~g~~~e~I~~aL~~Ya~k~lp~l~r~~~ 240 (597)
|=.||+..|+.+.+..+|+......-+++.++.+++.|.+...+. |
T Consensus 170 -----------------------------~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~--R--- 215 (571)
T KOG4441|consen 170 -----------------------------SKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEE--R--- 215 (571)
T ss_pred -----------------------------hccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhh--H---
Confidence 125799999999999999999999999999999999999543221 1
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 039661 241 FSSGTNYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEKRV 309 (597)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~qr~lLE~Iv~lLp~~~~~vs~~fLf~LLR~a~~l~as~~cr~~LE~rI 309 (597)
...--.+++.|.. +.+|..||...+.....+..+..|+..|..=.
T Consensus 216 ------------------~~~~~~ll~~vr~------~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 216 ------------------EEHLPALLEAVRL------PLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred ------------------HHHHHHHHHhcCc------cCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 1222345555554 66889999999999999999999998876544
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.91 E-value=2.8e-24 Score=240.89 Aligned_cols=224 Identities=16% Similarity=0.206 Sum_probs=171.1
Q ss_pred CCCCCCeeEEEEEC-CEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCCcccchhh
Q 039661 2 CTSGLPSDVTIEVG-EMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALN 80 (597)
Q Consensus 2 ~~~g~~~DV~I~Vg-~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it~~N 80 (597)
+.++.+|||+|.|+ |++|++||.+||++|+||++||++++.|.....+|+|+++ .+++|+.+++|+||++ |+.+|
T Consensus 20 r~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~n 95 (557)
T PHA02713 20 LDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMN 95 (557)
T ss_pred HhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHHH
Confidence 56799999999997 8999999999999999999999998876323578999999 4799999999999997 79999
Q ss_pred HhHHHHhhcccccCccCCCCcHHHHHHHHHHH-hhhchhHHHHHHhhhhhHHHHhhhhchhhhHHHHHHHHHcCCCCCCc
Q 039661 81 AVGLRCAAEYLHMTDDYGEGNLITQTEAFLND-VFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKACADPNLFN 159 (597)
Q Consensus 81 V~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~-vl~sw~dsi~~L~sC~~Llp~Ae~l~iv~RCidsLA~kac~d~~~~~ 159 (597)
|+.|+.||.+|||++ |++.|++||.+ +. ..||.+++..++.++... ..+....-++.++..+
T Consensus 96 v~~ll~aA~~lqi~~------l~~~C~~~l~~~l~---------~~NCl~i~~~~~~~~~~~-L~~~a~~~i~~~f~~v- 158 (557)
T PHA02713 96 VIDVLKCADYLLIDD------LVTDCESYIKDYTN---------HDTCIYMYHRLYEMSHIP-IVKYIKRMLMSNIPTL- 158 (557)
T ss_pred HHHHHHHHHHHCHHH------HHHHHHHHHHhhCC---------ccchHHHHHHHHhccchH-HHHHHHHHHHHHHHHH-
Confidence 999999999999999 99999999999 63 567777777666665321 2222222234443221
Q ss_pred CCCcCCCCccccccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhhccccccC
Q 039661 160 WPASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALE-SRSMKPEKIAASLMCYANRYIPLMNRQ 238 (597)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~dWW~EDl~~L~l~lf~rvI~am~-~~g~~~e~I~~aL~~Ya~k~lp~l~r~ 238 (597)
.. .|||..|+.+.+..+|+... ...-+++.|.++++.|.+.. +.. |
T Consensus 159 ------------------~~------------~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d-~~~-r- 205 (557)
T PHA02713 159 ------------------IT------------TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN-YIT-E- 205 (557)
T ss_pred ------------------hC------------ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC-HHH-H-
Confidence 00 37899999999999999876 46678999999999999542 210 1
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhhCCChHHHHHHHH
Q 039661 239 SSFSSGTNYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLRAAMVLHASPSCKENLEK 307 (597)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~qr~lLE~Iv~lLp~~~~~vs~~fLf~LLR~a~~l~as~~cr~~LE~ 307 (597)
.....||+.|.. ..++.++++ .+.....+..++.|+.-|+.
T Consensus 206 ---------------------~~~~~ll~~VR~------~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~ 246 (557)
T PHA02713 206 ---------------------EQLLCILSCIDI------QNLDKKSRL-LLYSNKTINMYPSCIQFLLD 246 (557)
T ss_pred ---------------------HHHhhhHhhhhH------hhcchhhhh-hhcchHHHHhhHHHHHHHhh
Confidence 112367777764 334556666 45556677788999988765
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.88 E-value=3.8e-23 Score=227.84 Aligned_cols=171 Identities=12% Similarity=0.078 Sum_probs=139.9
Q ss_pred CCCCCeeEEEEECCEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEe--cCCCCCHHHHHHHHHHHhCCCcccchhh
Q 039661 3 TSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKL--DGIPGGAKSFELVIKFCYGVKIELTALN 80 (597)
Q Consensus 3 ~~g~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L--~d~pGgae~felv~~FcYg~~i~it~~N 80 (597)
.+|.+|||+..+ |.+|+|||.|||++|+|||+||++++.| +. .+|.+ .|+ .+++|+.+++|+|||+|.||.+|
T Consensus 18 ~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~E-s~-~~v~~~~~~v--~~~~l~~lldy~YTg~l~it~~n 92 (480)
T PHA02790 18 MTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTK-NK-DPVTRVCLDL--DIHSLTSIVIYSYTGKVYIDSHN 92 (480)
T ss_pred hhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCccc-cc-cceEEEecCc--CHHHHHHHHHhheeeeEEEeccc
Confidence 468999987755 5699999999999999999999998887 33 34555 377 47999999999999999999999
Q ss_pred HhHHHHhhcccccCccCCCCcHHHHHHHHHHH-hhhchhHHHHHHhhhhhHHHHhhhhchhhhHHHHHHHHH----cCCC
Q 039661 81 AVGLRCAAEYLHMTDDYGEGNLITQTEAFLND-VFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKA----CADP 155 (597)
Q Consensus 81 V~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~-vl~sw~dsi~~L~sC~~Llp~Ae~l~iv~RCidsLA~ka----c~d~ 155 (597)
|+.|+.||.+|||++ |++.|++||.+ +. ..||.+++.+|+.+++ +.|..+| +.++
T Consensus 93 V~~ll~aA~~Lqi~~------v~~~C~~fL~~~l~---------~~NCl~i~~~A~~y~~-----~~L~~~a~~fi~~nF 152 (480)
T PHA02790 93 VVNLLRASILTSVEF------IIYTCINFILRDFR---------KEYCVECYMMGIEYGL-----SNLLCHTKDFIAKHF 152 (480)
T ss_pred HHHHHHHHHHhChHH------HHHHHHHHHHhhCC---------cchHHHHHHHHHHhCH-----HHHHHHHHHHHHHhH
Confidence 999999999999999 99999999999 73 5689999999999887 4555544 4443
Q ss_pred CCCcCCCcCCCCccccccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 039661 156 NLFNWPASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANR 230 (597)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~dWW~EDl~~L~l~lf~rvI~am~~~g~~~e~I~~aL~~Ya~k 230 (597)
..+. . .=+|||..|++ ..+|+......-+++.|.++++.|.+.
T Consensus 153 ~~v~----------------------------~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 153 LELE----------------------------D-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMK 195 (480)
T ss_pred HHHh----------------------------c-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHh
Confidence 2210 0 00368888886 578888888888999999999999963
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.87 E-value=9.4e-22 Score=218.12 Aligned_cols=219 Identities=17% Similarity=0.147 Sum_probs=172.0
Q ss_pred CCCCeeEEEEE--CCEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCCcccchhhH
Q 039661 4 SGLPSDVTIEV--GEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNA 81 (597)
Q Consensus 4 ~g~~~DV~I~V--g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it~~NV 81 (597)
+|.+|||+|.| +|++|++||.+|+++|+||++||++++.+ .+|+|++ + +++|+.+++|+|+|+++|+.+||
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~----~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKE----NEINLNI-D--YDSFNEVIKYIYTGKINITSNNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCC----ceEEecC-C--HHHHHHHHHHhcCCceEEcHHHH
Confidence 68999999998 99999999999999999999999987753 5799888 4 79999999999999999999999
Q ss_pred hHHHHhhcccccCccCCCCcHHHHHHHHHHH-hhhchhHHHHHHhhhhhHHHHhhhhch---hhhHHHHHHHHHcCCCCC
Q 039661 82 VGLRCAAEYLHMTDDYGEGNLITQTEAFLND-VFSDWADAIKALETCQQVLPYAQDLHV---VSRCIDSLAMKACADPNL 157 (597)
Q Consensus 82 ~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~-vl~sw~dsi~~L~sC~~Llp~Ae~l~i---v~RCidsLA~kac~d~~~ 157 (597)
..|+.||++|||++ |+..|++||.+ + ...||..++.+|+.+++ .+.|.+-|+.. ...
T Consensus 79 ~~ll~~A~~l~~~~------l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~n----f~~ 139 (534)
T PHA03098 79 KDILSIANYLIIDF------LINLCINYIIKII---------DDNNCIDIYRFSFFYGCKKLYSAAYNYIRNN----IEL 139 (534)
T ss_pred HHHHHHHHHhCcHH------HHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCcHHHHHHHHHHHHHH----HHH
Confidence 99999999999999 99999999999 6 36789999999998874 33444444332 111
Q ss_pred CcCCCcCCCCccccccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhcccccc
Q 039661 158 FNWPASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYIPLMNR 237 (597)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~dWW~EDl~~L~l~lf~rvI~am~~~g~~~e~I~~aL~~Ya~k~lp~l~r 237 (597)
+ .. .+|+..|+.+..+.+|+......-+++.|.++++.|++..... |
T Consensus 140 v-------------------~~------------~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~--r 186 (534)
T PHA03098 140 I-------------------YN------------DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNN--K 186 (534)
T ss_pred H-------------------hc------------CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhh--h
Confidence 1 00 3589999999999999988888888999999999999542110 1
Q ss_pred CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH------HHHhhCCChHHHHHHHHHH
Q 039661 238 QSSFSSGTNYANPGASISSLSEAEQRALLEEIVDLLPNKREVTSTHLLLKLLR------AAMVLHASPSCKENLEKRV 309 (597)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~qr~lLE~Iv~lLp~~~~~vs~~fLf~LLR------~a~~l~as~~cr~~LE~rI 309 (597)
...-..|++.|.. +.++..+|..+.+ .-..+ .+..|+..++...
T Consensus 187 ---------------------~~~~~~ll~~vR~------~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (534)
T PHA03098 187 ---------------------YKDICLILKVLRI------TFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKK 236 (534)
T ss_pred ---------------------HhHHHHHHhhccc------cccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHH
Confidence 1222457777765 5677788888765 22233 6777887765544
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.66 E-value=2.9e-16 Score=137.69 Aligned_cols=100 Identities=31% Similarity=0.407 Sum_probs=88.5
Q ss_pred CCCCeeEEEEEC-CEEEEeehhhhhccCHHHHHHHhcc-CCCCCccceEEecCCCCCHHHHHHHHHHHhCCCcccc-hhh
Q 039661 4 SGLPSDVTIEVG-EMSFHLHKFPLLSRSGLLEKLIEEF-CSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELT-ALN 80 (597)
Q Consensus 4 ~g~~~DV~I~Vg-~~~F~lHK~vLas~S~yfr~lf~~~-~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it-~~N 80 (597)
++.+||++|.|+ +.+|++||.+|+++|+||++||... ..+ ....+|.+++++ +++|+.+++|+|++.+.++ .+|
T Consensus 7 ~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~ 83 (111)
T PF00651_consen 7 SNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKE-STVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDEN 83 (111)
T ss_dssp HTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTT-SSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTT
T ss_pred CCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccc-cccccccccccc--ccccccccccccCCcccCCHHHH
Confidence 578999999999 8999999999999999999999987 343 334578899995 7999999999999999999 999
Q ss_pred HhHHHHhhcccccCccCCCCcHHHHHHHHHHH
Q 039661 81 AVGLRCAAEYLHMTDDYGEGNLITQTEAFLND 112 (597)
Q Consensus 81 V~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~ 112 (597)
+..++..|.+|+|++ |...|+.||.+
T Consensus 84 ~~~ll~lA~~~~~~~------L~~~~~~~l~~ 109 (111)
T PF00651_consen 84 VEELLELADKLQIPE------LKKACEKFLQE 109 (111)
T ss_dssp HHHHHHHHHHTTBHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHH------HHHHHHHHHHh
Confidence 999999999999998 99999999986
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.58 E-value=3.2e-15 Score=123.60 Aligned_cols=90 Identities=28% Similarity=0.389 Sum_probs=81.4
Q ss_pred eEEEEECCEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCCcccchhhHhHHHHhh
Q 039661 9 DVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAVGLRCAA 88 (597)
Q Consensus 9 DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it~~NV~~L~cAA 88 (597)
||+|.|||..|++||.+|+++|+||++||.+...+ .....+.++++ .+++|+.+++|+|++++.+++.|+..++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~-~~~~~i~l~~~--~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKE-SKKSEIYLDDV--SPEDFRALLEFLYTGKLDLPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCcc-CCCCEEEecCC--CHHHHHHHHHeecCceeecCHHHHHHHHHHH
Confidence 78999999999999999999999999999986654 24568889887 4799999999999999999999999999999
Q ss_pred cccccCccCCCCcHHHHHH
Q 039661 89 EYLHMTDDYGEGNLITQTE 107 (597)
Q Consensus 89 ~~LqMte~~~~~NL~~~ce 107 (597)
++++|++ |+..|+
T Consensus 78 ~~~~~~~------l~~~c~ 90 (90)
T smart00225 78 DYLQIPG------LVELCE 90 (90)
T ss_pred HHHCcHH------HHhhhC
Confidence 9999998 888774
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.25 E-value=5.4e-11 Score=128.45 Aligned_cols=176 Identities=19% Similarity=0.252 Sum_probs=143.1
Q ss_pred CCCCeeEEEEECC-----EEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCCcccch
Q 039661 4 SGLPSDVTIEVGE-----MSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTA 78 (597)
Q Consensus 4 ~g~~~DV~I~Vg~-----~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it~ 78 (597)
+...+||.+.||+ +.||+||++|+..|.-|.+||..+..++ ...+|.++|+ .|.+|...++|+|+-.+.+.+
T Consensus 111 n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~-~s~ei~lpdv--epaaFl~~L~flYsdev~~~~ 187 (521)
T KOG2075|consen 111 NELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAED-ASLEIRLPDV--EPAAFLAFLRFLYSDEVKLAA 187 (521)
T ss_pred CcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccc-cCceeecCCc--ChhHhHHHHHHHhcchhhhhH
Confidence 5678999999974 7899999999999999999999987762 4579999999 479999999999999999999
Q ss_pred hhHhHHHHhhcccccCccCCCCcHHHHHHHHHHH-hhhchhHHHHHHhhhhhHHHHhhhhchhhhHHHHHHHHH--cCCC
Q 039661 79 LNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLND-VFSDWADAIKALETCQQVLPYAQDLHVVSRCIDSLAMKA--CADP 155 (597)
Q Consensus 79 ~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~-vl~sw~dsi~~L~sC~~Llp~Ae~l~iv~RCidsLA~ka--c~d~ 155 (597)
+||..++.||.-.-.+. |...|.+||.. ++. .+.+.-|-+|..+ .++-.++++|++.|.... |.++
T Consensus 188 dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~~--~naf~~L~q~A~l---f~ep~Li~~c~e~id~~~~~al~~ 256 (521)
T KOG2075|consen 188 DTVITTLYAAKKYLVPA------LERQCVKFLRKNLMA--DNAFLELFQRAKL---FDEPSLISICLEVIDKSFEDALTP 256 (521)
T ss_pred HHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcCC--hHHHHHHHHHHHh---hcCHHHHHHHHHHhhhHHHhhhCc
Confidence 99999999998777777 99999999999 766 5666667777544 455569999999987653 1111
Q ss_pred CCCcCCCcCCCCccccccccCcccCCCCCCCCCCccccccccCChHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 039661 156 NLFNWPASECNNTQKISIWNGISTATKPKSTGDDWWFGDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYAN 229 (597)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~dWW~EDl~~L~l~lf~rvI~am~~~g~~~e~I~~aL~~Ya~ 229 (597)
=||-|+-.+ .++|..|+..-. ..+++-.+++++..|+.
T Consensus 257 ----------------------------------EGf~did~~-~dt~~evl~r~~-l~~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 257 ----------------------------------EGFCDIDST-RDTYEEVLRRDT-LEAREFRLFEAALKWAE 294 (521)
T ss_pred ----------------------------------cceeehhhH-HHHHHHHHhhcc-cchhHHHHHHHHHhhcc
Confidence 145566555 888888877654 44678899999999985
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.02 E-value=2.7e-10 Score=120.81 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=87.8
Q ss_pred CCCCCCeeEEEEECCEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCCcccch---
Q 039661 2 CTSGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTA--- 78 (597)
Q Consensus 2 ~~~g~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it~--- 78 (597)
|+....+||++.|+++.|++||.+||++|.|||+|+-.++.| +.+..|.|++- .+++|..+++|+|+|++.++.
T Consensus 39 ~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~E-s~q~~ipLq~t--~~eAF~~lLrYiYtg~~~l~~~~e 115 (620)
T KOG4350|consen 39 FTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQE-SHQQLIPLQET--NSEAFRALLRYIYTGKIDLAGVEE 115 (620)
T ss_pred hhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhh-hhhcccccccc--cHHHHHHHHHHHhhcceecccchH
Confidence 566788999999999999999999999999999999999887 55677888775 589999999999999999875
Q ss_pred hhHhHHHHhhcccccCccCCCCcHHHHHHHHHHHhhh
Q 039661 79 LNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLNDVFS 115 (597)
Q Consensus 79 ~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~vl~ 115 (597)
+-....+.-|...++.+ |-..+..||.+++.
T Consensus 116 d~lld~LslAh~Ygf~~------Le~aiSeYl~~iL~ 146 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQ------LETAISEYLKEILK 146 (620)
T ss_pred HHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHc
Confidence 33444556666667776 99999999999433
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.68 E-value=2.1e-08 Score=98.37 Aligned_cols=115 Identities=20% Similarity=0.299 Sum_probs=94.6
Q ss_pred CCCCeeEEEEEC---CEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCCcccchhh
Q 039661 4 SGLPSDVTIEVG---EMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALN 80 (597)
Q Consensus 4 ~g~~~DV~I~Vg---~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it~~N 80 (597)
...++||++.++ ++.+++||+|||++|++.+ |.++.++ ...+..+.|. .+++|..+++++||-.|++..+.
T Consensus 63 k~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de--kse~~~~dDa--d~Ea~~t~iRWIYTDEidfk~dD 136 (280)
T KOG4591|consen 63 KEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE--KSEELDLDDA--DFEAFHTAIRWIYTDEIDFKEDD 136 (280)
T ss_pred cccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc--chhhhccccc--CHHHHHHhheeeeccccccccch
Confidence 467899999998 6779999999999999764 4554443 2346677777 57999999999999999987766
Q ss_pred H--hHHHHhhcccccCccCCCCcHHHHHHHHHHH-hhhchhHHHHHHhhhhhHHHHhhhhch
Q 039661 81 A--VGLRCAAEYLHMTDDYGEGNLITQTEAFLND-VFSDWADAIKALETCQQVLPYAQDLHV 139 (597)
Q Consensus 81 V--~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~-vl~sw~dsi~~L~sC~~Llp~Ae~l~i 139 (597)
+ ..|+..|..+|..- |.++|+.=+.. + ...||..+..+||++..
T Consensus 137 ~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n~ 183 (280)
T KOG4591|consen 137 EFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEELNA 183 (280)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhhH
Confidence 5 45888999999987 99999998888 5 47899999999999864
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.40 E-value=6.7e-07 Score=95.50 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=100.6
Q ss_pred CCCCeeEEEEECCEEEEeehhhhhccCHHHHHHHhccCCCCCccc--eEEecCCCCCHHHHHHHHHHHhCCCcccchhhH
Q 039661 4 SGLPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVC--VLKLDGIPGGAKSFELVIKFCYGVKIELTALNA 81 (597)
Q Consensus 4 ~g~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~--~i~L~d~pGgae~felv~~FcYg~~i~it~~NV 81 (597)
+|.-+||+|.+-|.+.++||.-| ..|+||..||.+...| +... .++|+|=--...+|..++.=.|...|+|..+-|
T Consensus 66 q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~e-s~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv 143 (488)
T KOG4682|consen 66 QGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKE-SSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDV 143 (488)
T ss_pred cCCCcceehhhccceeeeeeeee-eccHHHHHHhccccCh-hhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHH
Confidence 57789999999999999999877 6799999999987665 3333 455555333679999999999999999999999
Q ss_pred hHHHHhhcccccCccCCCCcHHHHHHHHHHH-hhhchhHHHHHHhhhhhHHHHhhhhch
Q 039661 82 VGLRCAAEYLHMTDDYGEGNLITQTEAFLND-VFSDWADAIKALETCQQVLPYAQDLHV 139 (597)
Q Consensus 82 ~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~-vl~sw~dsi~~L~sC~~Llp~Ae~l~i 139 (597)
..++.||.+||... |+++|.+-+.+ +- .++-.+....+..||+
T Consensus 144 ~gvlAaA~~lqldg------l~qrC~evMie~ls---------pkta~~yYea~ckYgl 187 (488)
T KOG4682|consen 144 VGVLAAACLLQLDG------LIQRCGEVMIETLS---------PKTACGYYEAACKYGL 187 (488)
T ss_pred HHHHHHHHHHHHhh------HHHHHHHHHHHhcC---------hhhhhHhhhhhhhhhh
Confidence 99999999999998 99999999999 63 3566667778888875
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.19 E-value=2e-06 Score=98.22 Aligned_cols=126 Identities=20% Similarity=0.272 Sum_probs=97.3
Q ss_pred CeeEEEEECCEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHh-CCCcccc-----hhh
Q 039661 7 PSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCY-GVKIELT-----ALN 80 (597)
Q Consensus 7 ~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcY-g~~i~it-----~~N 80 (597)
.|||++. +|+.|+|||.+|++++.||..||.....| + ..|.....|-.+|.++.|++|.| +-+.++- .+=
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E-~--sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWME-S--SSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhh-h--ccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 3444444 89999999999999999999999986544 2 34566666767899999999999 4444431 222
Q ss_pred HhHHHHhhcccccCccCCCCcHHHHHHHHHHH-hhhchhHHHHHHhhhhhHHHHhhhhc---hhhhHHHHHHHHH
Q 039661 81 AVGLRCAAEYLHMTDDYGEGNLITQTEAFLND-VFSDWADAIKALETCQQVLPYAQDLH---VVSRCIDSLAMKA 151 (597)
Q Consensus 81 V~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~-vl~sw~dsi~~L~sC~~Llp~Ae~l~---iv~RCidsLA~ka 151 (597)
+..++..|+.|=+++ |.+.|+.-|.+ + .|++|..|+.+|-.|+ +-.||+|=|-..+
T Consensus 788 ~~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 788 MFEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNI 847 (1267)
T ss_pred hHHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhH
Confidence 455777888888888 99999988888 5 5899999999998885 7789999876553
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.16 E-value=2.4e-06 Score=97.46 Aligned_cols=66 Identities=33% Similarity=0.519 Sum_probs=55.1
Q ss_pred CCeeEEEEECCEEEEeehhhhhccCHHHHHHHhccCCC-----------CCccceEEecCCCCCHHHHHHHHHHHhCCC
Q 039661 6 LPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSG-----------DRSVCVLKLDGIPGGAKSFELVIKFCYGVK 73 (597)
Q Consensus 6 ~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e-----------~~~~~~i~L~d~pGgae~felv~~FcYg~~ 73 (597)
-..|||+.||+.-||+|||+|+++|++||+||....+. ....++|.+.++| |.+||+++.|+|+..
T Consensus 557 s~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 557 SFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred ccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 45799999999999999999999999999999874321 1224567788998 499999999999875
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.79 E-value=3.1e-05 Score=81.59 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=76.0
Q ss_pred EEEEEC------CEEEEeehhhhhccCHHHHHHHhc---cCCCCCccceEEec-CCCCCHHHHHHHHHHHhCCCcccchh
Q 039661 10 VTIEVG------EMSFHLHKFPLLSRSGLLEKLIEE---FCSGDRSVCVLKLD-GIPGGAKSFELVIKFCYGVKIELTAL 79 (597)
Q Consensus 10 V~I~Vg------~~~F~lHK~vLas~S~yfr~lf~~---~~~e~~~~~~i~L~-d~pGgae~felv~~FcYg~~i~it~~ 79 (597)
|+|+|- .+.|.|.+.+|.+.=+||+..+.. ...+ .....|..+ |+ .+|+-+++|+++....||++
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~-~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~ 75 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQR-WEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPS 75 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCc-CCCcceEEecCh----hHHHHHHHHhhcCCCcCCcC
Confidence 466662 357999999999999999999965 2211 112334444 76 79999999999999999999
Q ss_pred hHhHHHHhhcccccCccCCCCcHHHHHHHHHHH
Q 039661 80 NAVGLRCAAEYLHMTDDYGEGNLITQTEAFLND 112 (597)
Q Consensus 80 NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~ 112 (597)
||+.++-.++||||++ |++.|-.|+..
T Consensus 76 NvvsIliSS~FL~M~~------Lve~cl~y~~~ 102 (317)
T PF11822_consen 76 NVVSILISSEFLQMES------LVEECLQYCHD 102 (317)
T ss_pred cEEEeEehhhhhccHH------HHHHHHHHHHH
Confidence 9999999999999999 99999999977
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.19 E-value=0.0011 Score=59.06 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=62.1
Q ss_pred EEEEE-CCEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCC---------------
Q 039661 10 VTIEV-GEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVK--------------- 73 (597)
Q Consensus 10 V~I~V-g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~--------------- 73 (597)
|++.- +|..|.+.+.+. ..|+-++.|+.+....+.....|.|++++| .+++.|++||+--+
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~--~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTS--KILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCH--HHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55555 899999999966 689999999987432211224799999975 99999999998211
Q ss_pred ----cccchhhHhHHHHhhccccc
Q 039661 74 ----IELTALNAVGLRCAAEYLHM 93 (597)
Q Consensus 74 ----i~it~~NV~~L~cAA~~LqM 93 (597)
+.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11667789999999999986
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.68 E-value=0.0016 Score=56.35 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=60.5
Q ss_pred EEEEECCEEEEeehhhhh-ccCHHHHHHHhcc--CCCCCccceEEecCCCCCHHHHHHHHHHHhC-CCcccc-hhhHhHH
Q 039661 10 VTIEVGEMSFHLHKFPLL-SRSGLLEKLIEEF--CSGDRSVCVLKLDGIPGGAKSFELVIKFCYG-VKIELT-ALNAVGL 84 (597)
Q Consensus 10 V~I~Vg~~~F~lHK~vLa-s~S~yfr~lf~~~--~~e~~~~~~i~L~d~pGgae~felv~~FcYg-~~i~it-~~NV~~L 84 (597)
|+|.|||+.|.+-+..|. -...+|.+|+... .........+-|. = .|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-R--dp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-R--DPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S---HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-c--ChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 4467999999853 1100123455553 2 57999999999998 777764 5677889
Q ss_pred HHhhcccccCc
Q 039661 85 RCAAEYLHMTD 95 (597)
Q Consensus 85 ~cAA~~LqMte 95 (597)
+..|+|.++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999987
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.025 Score=57.65 Aligned_cols=94 Identities=18% Similarity=0.314 Sum_probs=75.4
Q ss_pred EEEEECCEEEEeehhhhhccCHHHHHHHhccCCCCCc-cceEEecCCCCCHHHHHHHHHHHhCCCccc--chhhHhHHHH
Q 039661 10 VTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRS-VCVLKLDGIPGGAKSFELVIKFCYGVKIEL--TALNAVGLRC 86 (597)
Q Consensus 10 V~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~-~~~i~L~d~pGgae~felv~~FcYg~~i~i--t~~NV~~L~c 86 (597)
|.+.|||..|...|.-|.-..|+|+.|+.....-..+ ...|-|.- .|.=|++|++|+=.|.+.+ +..++..|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDR---SpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDR---SPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecC---ChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 5688999999999999999999999999876421011 12344332 5699999999999777665 5567779999
Q ss_pred hhcccccCccCCCCcHHHHHHHHHHH
Q 039661 87 AAEYLHMTDDYGEGNLITQTEAFLND 112 (597)
Q Consensus 87 AA~~LqMte~~~~~NL~~~ce~FL~~ 112 (597)
=|+|..+++ |++.|+.=+..
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIAR 103 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhh
Confidence 999999999 99999997777
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=95.32 E-value=0.076 Score=47.32 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=59.4
Q ss_pred CCEEEEeehhhhhccCHHHHHHHhccCCC-CCccceEEecCCCCCHHHHHHHHHHH-----hCC------CcccchhhHh
Q 039661 15 GEMSFHLHKFPLLSRSGLLEKLIEEFCSG-DRSVCVLKLDGIPGGAKSFELVIKFC-----YGV------KIELTALNAV 82 (597)
Q Consensus 15 g~~~F~lHK~vLas~S~yfr~lf~~~~~e-~~~~~~i~L~d~pGgae~felv~~Fc-----Yg~------~i~it~~NV~ 82 (597)
+|.+|-+-|. .|.-||-+|+|+++.... +....+|.+++|| +..++.+..|. |+. +++|-|+-+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 7999998776 667799999999863221 1345689999997 69999998875 333 3678899999
Q ss_pred HHHHhhcccc
Q 039661 83 GLRCAAEYLH 92 (597)
Q Consensus 83 ~L~cAA~~Lq 92 (597)
.|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999997
No 19
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.89 E-value=0.13 Score=41.77 Aligned_cols=55 Identities=15% Similarity=0.340 Sum_probs=43.7
Q ss_pred EEEEE-CCEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHh
Q 039661 10 VTIEV-GEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCY 70 (597)
Q Consensus 10 V~I~V-g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcY 70 (597)
|++.- ||+.|.+.+.+. ..|+.++.|+.....+ . ..|.|++++ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~--~-~~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDE--D-EPIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCC--G-TEEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccc--c-cccccCccC--HHHHHHHHHHHH
Confidence 45555 899999999865 5799999999864433 1 279999996 599999999997
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.17 E-value=0.053 Score=56.33 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=53.8
Q ss_pred CCeeEEEEECCEEEEeehhhhhccCHHHHHHHhccCCCC-CccceEEecCCCCCHHHHHHHHHHHhCCCc
Q 039661 6 LPSDVTIEVGEMSFHLHKFPLLSRSGLLEKLIEEFCSGD-RSVCVLKLDGIPGGAKSFELVIKFCYGVKI 74 (597)
Q Consensus 6 ~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e~-~~~~~i~L~d~pGgae~felv~~FcYg~~i 74 (597)
...||-|......|++||..|+++|++|+-+.....+.+ ...+.+..-+|. -++|+..+.+.|+|..
T Consensus 129 ~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~tgEf 196 (401)
T KOG2838|consen 129 VCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLITGEF 196 (401)
T ss_pred eeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHhccc
Confidence 456899999999999999999999999999887654321 123456777884 5999999999999876
No 21
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=0.36 Score=46.90 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=68.6
Q ss_pred CCEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCC---------------------
Q 039661 15 GEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVK--------------------- 73 (597)
Q Consensus 15 g~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~--------------------- 73 (597)
+|+.|.+-..+ |..|.-++.++.+..-.. ....|-|+.|. +.+|.+|+.|||-=+
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~-~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCAD-ENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCc-cCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 89999998875 467999999988643221 11368888985 599999999999511
Q ss_pred ----cccchhhHhHHHHhhcccccCccCCCCcHHHHHHHHHHH
Q 039661 74 ----IELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLND 112 (597)
Q Consensus 74 ----i~it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~ 112 (597)
+.+...++..|.-||.||+|+. |+..|+.....
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~ 125 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVAN 125 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHH
Confidence 1234567889999999999998 99999998888
No 22
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=89.59 E-value=0.3 Score=50.98 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=40.1
Q ss_pred EEEeehhhhhccCHHHHHHHhccC---CCC-----CccceEEecC--CCCCHHHHHH-HHHHHhCCCcccc
Q 039661 18 SFHLHKFPLLSRSGLLEKLIEEFC---SGD-----RSVCVLKLDG--IPGGAKSFEL-VIKFCYGVKIELT 77 (597)
Q Consensus 18 ~F~lHK~vLas~S~yfr~lf~~~~---~e~-----~~~~~i~L~d--~pGgae~fel-v~~FcYg~~i~it 77 (597)
++.+||.+.+++|++||.|+...- +|+ ....+|.+.. || .+|.. ++.|+||-.++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhheecccchh
Confidence 578999999999999999976421 111 1234677764 54 67664 5688999888765
No 23
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.30 E-value=1.2 Score=48.46 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=58.2
Q ss_pred EEEEeehhhhhccCHHHHHHHhccCCCCCcc---ceEEecCCCCCHHHHHHHHHHHhCCCcccchhhHhHHHHhhccccc
Q 039661 17 MSFHLHKFPLLSRSGLLEKLIEEFCSGDRSV---CVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAVGLRCAAEYLHM 93 (597)
Q Consensus 17 ~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~---~~i~L~d~pGgae~felv~~FcYg~~i~it~~NV~~L~cAA~~LqM 93 (597)
..+|+|..++ ++..||+.||.+.-.+++.+ ....++.+ .....|.+++|.|.-+-+|-++-...++--|..|-.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~--~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSL--ADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchH--HHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 5599999987 57889999999875542212 22344444 347899999999999999999988888888888877
Q ss_pred Cc
Q 039661 94 TD 95 (597)
Q Consensus 94 te 95 (597)
..
T Consensus 378 ~~ 379 (516)
T KOG0511|consen 378 AD 379 (516)
T ss_pred hh
Confidence 64
No 24
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=73.80 E-value=13 Score=39.76 Aligned_cols=112 Identities=16% Similarity=0.283 Sum_probs=76.8
Q ss_pred CCCCCCeeEEEEECCEEEEeehhhhhccCH-HHHHHHhccCCC--CCccceEEec-CCCCCHHHHHHHHHHHhCCCcccc
Q 039661 2 CTSGLPSDVTIEVGEMSFHLHKFPLLSRSG-LLEKLIEEFCSG--DRSVCVLKLD-GIPGGAKSFELVIKFCYGVKIELT 77 (597)
Q Consensus 2 ~~~g~~~DV~I~Vg~~~F~lHK~vLas~S~-yfr~lf~~~~~e--~~~~~~i~L~-d~pGgae~felv~~FcYg~~i~it 77 (597)
|..|..--++..|++..|-.-+++|-+.-. -+-.||..+..- -....+.+.. |+ |...|..|++|--+|.|.--
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi--~s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGM--TSSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcch--hHHHHHHHHHHHhcCceeCC
Confidence 345556678899999999999999877532 344566543210 0122456664 66 67999999999878887754
Q ss_pred h-hhHhHHHHhhcccccCccCC---------------CCcHHHHHHHHHHH-hhh
Q 039661 78 A-LNAVGLRCAAEYLHMTDDYG---------------EGNLITQTEAFLND-VFS 115 (597)
Q Consensus 78 ~-~NV~~L~cAA~~LqMte~~~---------------~~NL~~~ce~FL~~-vl~ 115 (597)
+ -.|..|+.|.+||-++=++. .+.-.++.+.||++ +++
T Consensus 168 ~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~ILP 222 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIILP 222 (438)
T ss_pred CCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 3 56788999999998875443 33345667777777 655
No 25
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=73.13 E-value=11 Score=42.07 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=61.5
Q ss_pred CCCee-EEEEECCEEEEeehhhhhccC--HHHHHHHhccCCCCCc-cceEEecCCCCCHHHHHHHHHHHhCCCcccchhh
Q 039661 5 GLPSD-VTIEVGEMSFHLHKFPLLSRS--GLLEKLIEEFCSGDRS-VCVLKLDGIPGGAKSFELVIKFCYGVKIELTALN 80 (597)
Q Consensus 5 g~~~D-V~I~Vg~~~F~lHK~vLas~S--~yfr~lf~~~~~e~~~-~~~i~L~d~pGgae~felv~~FcYg~~i~it~~N 80 (597)
+...| |.+.|||+.|.--+.-|+.-. .+|.+|++........ ...|-|. -.|+.|..+++|.-|+++.+..--
T Consensus 7 ~~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~~~g~~ 83 (465)
T KOG2714|consen 7 GSSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLDASGVF 83 (465)
T ss_pred CCCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCCCccCc
Confidence 33344 568999999999998887755 6899999743221011 1123332 257999999999999999995444
Q ss_pred HhHHHH-hhcccccCc
Q 039661 81 AVGLRC-AAEYLHMTD 95 (597)
Q Consensus 81 V~~L~c-AA~~LqMte 95 (597)
...|+- =|.|.++++
T Consensus 84 ~~~llhdEA~fYGl~~ 99 (465)
T KOG2714|consen 84 PERLLHDEAMFYGLTP 99 (465)
T ss_pred hhhhhhhhhhhcCcHH
Confidence 444444 899999997
No 26
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=70.86 E-value=4.6 Score=27.05 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.0
Q ss_pred chhhHHHHHHHHHHHHHH
Q 039661 519 GDGGMKERVSELEKEYFS 536 (597)
Q Consensus 519 ~~~~mr~rv~eLEkec~~ 536 (597)
||++.|.|+++||++...
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 899999999999998653
No 27
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=70.03 E-value=3.7 Score=34.79 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=27.1
Q ss_pred ccchhhHhHHHHhhcccccCccCCCCcHHHHHHHHHHH
Q 039661 75 ELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLND 112 (597)
Q Consensus 75 ~it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~ 112 (597)
.++...+..|..||.||+|+. |+..|+.++..
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~ 41 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG------LLDLCCKYIAN 41 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchH------HHHHHHHHHHH
Confidence 447788999999999999998 99999999988
No 28
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=66.13 E-value=4.5 Score=34.68 Aligned_cols=40 Identities=5% Similarity=0.079 Sum_probs=31.9
Q ss_pred cccccCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhc
Q 039661 193 GDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANRYI 232 (597)
Q Consensus 193 EDl~~L~l~lf~rvI~am~~~g~~~e~I~~aL~~Ya~k~l 232 (597)
+++..||++.+..+++.-.....++..|..+++.|++...
T Consensus 35 ~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~ 74 (103)
T PF07707_consen 35 DEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNP 74 (103)
T ss_dssp HHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTH
T ss_pred hhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCH
Confidence 5889999999999999877666788899999999996543
No 29
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=63.95 E-value=13 Score=31.18 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=33.5
Q ss_pred cccccCChHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 039661 193 GDVSSLSFPLYKLFIFALESRSMKPEKIAASLMCYANR 230 (597)
Q Consensus 193 EDl~~L~l~lf~rvI~am~~~g~~~e~I~~aL~~Ya~k 230 (597)
+++..||.+.+..+|........++..+.++++.|++.
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~ 72 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKH 72 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHC
Confidence 58899999999999998887777789999999999954
No 30
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=62.28 E-value=7.7 Score=33.48 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=25.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHhHHHHHh
Q 039661 515 DRVKGDGGMKERVSELEKEYFSMKEALQK 543 (597)
Q Consensus 515 ~~~~~~~~mr~rv~eLEkec~~mk~~~~k 543 (597)
.+..||+.||..|.+||.....||+..+.
T Consensus 36 ~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 36 SQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458999999999999999999998864
No 31
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=60.17 E-value=29 Score=34.34 Aligned_cols=97 Identities=22% Similarity=0.168 Sum_probs=67.7
Q ss_pred eeEEEEECCEEEEeehhhhhccC-HHHHHHHhccCCCC--CccceEEecCCCCCHHHHHHHHHHHhCCCcccchhhHhHH
Q 039661 8 SDVTIEVGEMSFHLHKFPLLSRS-GLLEKLIEEFCSGD--RSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAVGL 84 (597)
Q Consensus 8 ~DV~I~Vg~~~F~lHK~vLas~S-~yfr~lf~~~~~e~--~~~~~i~L~d~pGgae~felv~~FcYg~~i~it~~NV~~L 84 (597)
.=|-+.|||..|.--|.-|.--+ .++.++....++-. .+..---|-| -.|.-|.-|++|.-.|++.+++-.-..+
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlID--RDP~~FgpvLNylRhgklvl~~l~eeGv 98 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLID--RDPFYFGPVLNYLRHGKLVLNKLSEEGV 98 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEec--cCcchHHHHHHHHhcchhhhhhhhhhcc
Confidence 34667889999999999998887 45556555432210 1111112222 2468999999999999999999555668
Q ss_pred HHhhcccccCccCCCCcHHHHHHHHHHH
Q 039661 85 RCAAEYLHMTDDYGEGNLITQTEAFLND 112 (597)
Q Consensus 85 ~cAA~~LqMte~~~~~NL~~~ce~FL~~ 112 (597)
+.-|+|...+. |+....+-+.+
T Consensus 99 L~EAefyn~~~------li~likd~i~d 120 (210)
T KOG2715|consen 99 LEEAEFYNDPS------LIQLIKDRIQD 120 (210)
T ss_pred chhhhccCChH------HHHHHHHHHHH
Confidence 88999999987 77766665555
No 32
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=56.52 E-value=7.4 Score=42.68 Aligned_cols=60 Identities=22% Similarity=0.149 Sum_probs=42.2
Q ss_pred CCeeEEEEE-CCEEEEeehhhhhccCHHHHHHH-hccCCCCCccceE-EecCCCCCHHHHHHHHHHHhCC
Q 039661 6 LPSDVTIEV-GEMSFHLHKFPLLSRSGLLEKLI-EEFCSGDRSVCVL-KLDGIPGGAKSFELVIKFCYGV 72 (597)
Q Consensus 6 ~~~DV~I~V-g~~~F~lHK~vLas~S~yfr~lf-~~~~~e~~~~~~i-~L~d~pGgae~felv~~FcYg~ 72 (597)
...|++..+ .|..|-+|||.|+++|.||..-+ .....+ .+| ...-+ +.+|+..++|.|-.
T Consensus 148 ~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~----heI~~~~v~---~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 148 CCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG----HEIEAHRVI---LSAFSPFLKQLYLN 210 (516)
T ss_pred cccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc----Cchhhhhhh---HhhhhHHHHHHHHh
Confidence 345888777 79999999999999988775433 322211 244 34445 58999999999953
No 33
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=56.27 E-value=37 Score=32.17 Aligned_cols=91 Identities=13% Similarity=0.197 Sum_probs=64.9
Q ss_pred EEEE-ECCEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCC---------c-----
Q 039661 10 VTIE-VGEMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVK---------I----- 74 (597)
Q Consensus 10 V~I~-Vg~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~---------i----- 74 (597)
|.|. .+|..|.+.+. .|-+|-.++.|+.....- ...+.++.+ .+..|..+.+||-.-+ +
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~---n~p~p~pnV--rSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTAC---NYPIPAPNV--RSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhcccccc---CCCCcccch--hHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 4444 48999999886 678899999988764431 233455566 4689999999997221 1
Q ss_pred -----------ccchhhHhHHHHhhcccccCccCCCCcHHHHHHHHHHH
Q 039661 75 -----------ELTALNAVGLRCAAEYLHMTDDYGEGNLITQTEAFLND 112 (597)
Q Consensus 75 -----------~it~~NV~~L~cAA~~LqMte~~~~~NL~~~ce~FL~~ 112 (597)
++...-...+.-||.||+++. |++.||.-..+
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivae 120 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAE 120 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHH
Confidence 122334556778999999998 99999988887
No 34
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=55.42 E-value=43 Score=34.59 Aligned_cols=92 Identities=18% Similarity=0.306 Sum_probs=67.0
Q ss_pred eeEEEEECCEEEEeehhhhhccC--HHHHHHHhccC--CCCCccceEEecCCCCCHHHHHHHHHHHhCCCc-ccchhhHh
Q 039661 8 SDVTIEVGEMSFHLHKFPLLSRS--GLLEKLIEEFC--SGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKI-ELTALNAV 82 (597)
Q Consensus 8 ~DV~I~Vg~~~F~lHK~vLas~S--~yfr~lf~~~~--~e~~~~~~i~L~d~pGgae~felv~~FcYg~~i-~it~~NV~ 82 (597)
+=|.+.+||+.|.--..-|.-+= .-+-+||.... .+...+.-+-|.- .|.-||-++.|.-.|.| ..+.-|+.
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDR---sp~yFepIlNyLr~Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDR---SPKYFEPILNYLRDGQIPSLSDIDCL 85 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEcc---CchhhHHHHHHHhcCceeecCCccHH
Confidence 44778899999998887777763 46888998632 1111223344433 45899999999997775 46778999
Q ss_pred HHHHhhcccccCccCCCCcHHHHHHH
Q 039661 83 GLRCAAEYLHMTDDYGEGNLITQTEA 108 (597)
Q Consensus 83 ~L~cAA~~LqMte~~~~~NL~~~ce~ 108 (597)
.++.+|.|+|+-. |++.-+.
T Consensus 86 gvLeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 86 GVLEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHHHhhHHhhHh------HHhHHhh
Confidence 9999999999987 7766665
No 35
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=53.78 E-value=7.8 Score=30.14 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHhHH
Q 039661 520 DGGMKERVSELEKEYFSMKE 539 (597)
Q Consensus 520 ~~~mr~rv~eLEkec~~mk~ 539 (597)
-|.+|.||+|||.|...+|+
T Consensus 13 ~e~l~vrv~eLEeEV~~LrK 32 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRK 32 (48)
T ss_pred cchheeeHHHHHHHHHHHHH
Confidence 46788999999999887765
No 36
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=52.34 E-value=8.7 Score=34.02 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=33.0
Q ss_pred cCCCCCCCCchhHHHHHHHHHhCCCCCHHHHhhhhcccccCCC
Q 039661 404 IPDYARPNDDGIYHAIDIYLKAHPWMTDCEKEQLCRLMDCQKL 446 (597)
Q Consensus 404 lP~~aR~~~DgLYrAIDiYLKaHp~lse~Er~~lC~~mdcqKL 446 (597)
+|++.......+|+|+..||.+.+..+. .|-++++.-|-+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4555557788999999999999997776 88888887776653
No 37
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.98 E-value=8 Score=40.09 Aligned_cols=88 Identities=16% Similarity=-0.014 Sum_probs=64.9
Q ss_pred CEEEEeehhhhhccCHHHHHHHhccCCCCCccceEEecCCCCCHHHHHHHHHHHhCCCcccchhhHh---HHHHhhcccc
Q 039661 16 EMSFHLHKFPLLSRSGLLEKLIEEFCSGDRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELTALNAV---GLRCAAEYLH 92 (597)
Q Consensus 16 ~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it~~NV~---~L~cAA~~Lq 92 (597)
+..+..|+.+++++|+-|+.|+.....+ .....+.+.+. +++.|+.+..|.|...-..+..++- ++.++|...+
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~-~~~~~~~~~d~--~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFK-ESSKLITLLEE--KPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccch-hcccccccccc--chhhHhhhceEEEeccchHHHHHhhcCChhhhhccccc
Confidence 4559999999999999999998865432 12234456665 4688898899999865555555554 7777777777
Q ss_pred cCccCCCCcHHHHHHHHHHH
Q 039661 93 MTDDYGEGNLITQTEAFLND 112 (597)
Q Consensus 93 Mte~~~~~NL~~~ce~FL~~ 112 (597)
-.. |...|...|..
T Consensus 186 ~~~------lk~~~~~~l~~ 199 (297)
T KOG1987|consen 186 NRH------LKLACMPVLLS 199 (297)
T ss_pred cHH------HHHHHHHHHHH
Confidence 766 89999888887
No 38
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=38.84 E-value=30 Score=37.36 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=26.2
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHhhhc
Q 039661 519 GDGGMKERVSELEKEYFSMKEALQKIVM 546 (597)
Q Consensus 519 ~~~~mr~rv~eLEkec~~mk~~~~k~~k 546 (597)
||+.+..||.||||+...++++++.+.+
T Consensus 290 ElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 290 ELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999988765
No 39
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=36.18 E-value=85 Score=35.68 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=58.5
Q ss_pred eeEEEEECCEEEEeehhhhhcc-CHHHHHHHhccCCC---------CCccceEEecCCCCCHHHHHHHHHHHhCCCcccc
Q 039661 8 SDVTIEVGEMSFHLHKFPLLSR-SGLLEKLIEEFCSG---------DRSVCVLKLDGIPGGAKSFELVIKFCYGVKIELT 77 (597)
Q Consensus 8 ~DV~I~Vg~~~F~lHK~vLas~-S~yfr~lf~~~~~e---------~~~~~~i~L~d~pGgae~felv~~FcYg~~i~it 77 (597)
.-|+|.|||.++.+-+..|... =.++.++......+ +....+.-+. -.|.+|..|++|-++|++..-
T Consensus 31 ~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFD---R~P~~F~~Vl~fYrtGkLH~p 107 (477)
T KOG3713|consen 31 RRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFD---RHPGAFAYVLNFYRTGKLHVP 107 (477)
T ss_pred cEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeec---cChHHHHHHHHHHhcCeeccc
Confidence 3588999999999998888762 23455555432111 0112344433 346799999999999999864
Q ss_pred hhhHhH--HHHhhcccccCccCCCCcHHHHHHHH
Q 039661 78 ALNAVG--LRCAAEYLHMTDDYGEGNLITQTEAF 109 (597)
Q Consensus 78 ~~NV~~--L~cAA~~LqMte~~~~~NL~~~ce~F 109 (597)
. +|.. ...=-+|.++.+ +-++.||.-
T Consensus 108 ~-~vC~~~F~eEL~yWgI~~-----~~le~CC~~ 135 (477)
T KOG3713|consen 108 A-DVCPLSFEEELDYWGIDE-----AHLESCCWM 135 (477)
T ss_pred c-ccchHHHHHHHHHhCCCh-----hhhhHHhHH
Confidence 3 3333 333446777776 556666643
No 40
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=33.31 E-value=23 Score=35.89 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=27.7
Q ss_pred HHhcC--CCCCCCCchhHHHHHHHHHhCCCCCHHHHhh
Q 039661 401 ASVIP--DYARPNDDGIYHAIDIYLKAHPWMTDCEKEQ 436 (597)
Q Consensus 401 ae~lP--~~aR~~~DgLYrAIDiYLKaHp~lse~Er~~ 436 (597)
.+-+| +..+..-+|=|+||..|||.||+=-|.++.+
T Consensus 183 v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~~ 220 (237)
T COG3510 183 VNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTSR 220 (237)
T ss_pred ccCCCCcccchhcCCChHHHHHHHHHhCCcccccchhh
Confidence 34556 5666678999999999999999766666543
No 41
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=32.54 E-value=42 Score=27.62 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=19.6
Q ss_pred CchhHHHHHHHHHhCCCCCHHHHhhh
Q 039661 412 DDGIYHAIDIYLKAHPWMTDCEKEQL 437 (597)
Q Consensus 412 ~DgLYrAIDiYLKaHp~lse~Er~~l 437 (597)
.|+.|.|+ +.+|.+||++|-..+
T Consensus 10 pD~fY~~L---i~aH~gLs~e~S~~l 32 (60)
T PF10932_consen 10 PDDFYEAL---IEAHRGLSDEQSAAL 32 (60)
T ss_pred hhHHHHHH---HHHHhCCCHHHHHHH
Confidence 39999997 999999999986554
No 42
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=30.73 E-value=33 Score=41.40 Aligned_cols=76 Identities=28% Similarity=0.426 Sum_probs=52.1
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhcccCCCcccccCCCCCCCCCCChhHHHHHHHHHhhhhhhcCCCCCChhhHHHHH
Q 039661 322 LIPNMGYIDTLYDIDCVQRILDHFMSVNLHSSHCIIEEGQPLSGSGSLTPMTMVATLMDGYLAEVAPDVNLKPLKFETLA 401 (597)
Q Consensus 322 LiPs~~~~~tlyDvd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~kF~~La 401 (597)
+||...|+ +.+.++-+++||-..-. +|.|=.+..+|..+.+..|..++
T Consensus 252 iLP~Lt~G----~~e~m~~Lv~~F~p~l~----------------------------f~~~D~~~~~~~~~~Le~F~~i~ 299 (802)
T PF13764_consen 252 ILPFLTYG----NEEKMDALVEHFKPYLD----------------------------FDKFDEEHSPDEQFKLECFCEIA 299 (802)
T ss_pred HhhHHhcC----CHHHHHHHHHHHHHhcC----------------------------hhhcccccCchHHHHHHHHHHHH
Confidence 35766655 67888999999943211 34444456677778899999999
Q ss_pred HhcCCCC--C-----CCCchhHH-HHHHHHHhCCCC
Q 039661 402 SVIPDYA--R-----PNDDGIYH-AIDIYLKAHPWM 429 (597)
Q Consensus 402 e~lP~~a--R-----~~~DgLYr-AIDiYLKaHp~l 429 (597)
+++|.++ . ..+=|++. |++.-++.+|..
T Consensus 300 ~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~ 335 (802)
T PF13764_consen 300 EGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL 335 (802)
T ss_pred hcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc
Confidence 9999877 2 22346666 888555566765
No 43
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=27.07 E-value=46 Score=27.18 Aligned_cols=19 Identities=16% Similarity=0.454 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHhCCCCCH
Q 039661 413 DGIYHAIDIYLKAHPWMTD 431 (597)
Q Consensus 413 DgLYrAIDiYLKaHp~lse 431 (597)
--||.|+.-||+.||+-..
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 3599999999999997654
No 44
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.73 E-value=66 Score=33.46 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHhh
Q 039661 520 DGGMKERVSELEKEYFSMKEALQKI 544 (597)
Q Consensus 520 ~~~mr~rv~eLEkec~~mk~~~~k~ 544 (597)
-||.|.|+.|||+|....++++..+
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L 112 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSL 112 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999987776666654
No 45
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=25.52 E-value=2e+02 Score=32.69 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhhhhcCCC----------------CCChhhHHHHHHhcCCCCC----CCCc-h---------hHHHHHH
Q 039661 372 MTMVATLMDGYLAEVAPDV----------------NLKPLKFETLASVIPDYAR----PNDD-G---------IYHAIDI 421 (597)
Q Consensus 372 l~~VakLvD~YLaEiA~D~----------------nL~~~kF~~Lae~lP~~aR----~~~D-g---------LYrAIDi 421 (597)
..+|.+.+-.+|-+++.+| +|++-.|..|++-.-++.+ .+.| . +|||+|-
T Consensus 345 ~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavdr 424 (523)
T KOG2016|consen 345 ALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVDR 424 (523)
T ss_pred HHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHHHH
Confidence 5578899999999999884 4566667778875444444 3333 3 6999999
Q ss_pred HHHhCCCCCH
Q 039661 422 YLKAHPWMTD 431 (597)
Q Consensus 422 YLKaHp~lse 431 (597)
||+.|-...-
T Consensus 425 fl~~~gk~pG 434 (523)
T KOG2016|consen 425 FLKEKGKYPG 434 (523)
T ss_pred HHHHhcCCCC
Confidence 9999876554
No 46
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.38 E-value=61 Score=26.65 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=30.5
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHhhhccCccchhhhh-hhccc
Q 039661 519 GDGGMKERVSELEKEYFSMKEALQKIVMTKKSWKTFAK-RLVSK 561 (597)
Q Consensus 519 ~~~~mr~rv~eLEkec~~mk~~~~k~~k~~~~~~~~~~-~~g~~ 561 (597)
++..++.++.+|+++-..++++++++.+....-..++| +||..
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCc
Confidence 67777888888888888888888877444444555666 78765
No 47
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=21.52 E-value=48 Score=37.28 Aligned_cols=28 Identities=32% Similarity=0.748 Sum_probs=25.6
Q ss_pred CCCCCCCchhHHHHHHHHHhCCCCCHHH
Q 039661 406 DYARPNDDGIYHAIDIYLKAHPWMTDCE 433 (597)
Q Consensus 406 ~~aR~~~DgLYrAIDiYLKaHp~lse~E 433 (597)
.+.+|..|=||-|.++|-+.|||+.+.+
T Consensus 211 tyPkPL~e~L~~af~~y~~~hPWv~~~~ 238 (461)
T PF12029_consen 211 TYPKPLAELLEAAFETYRRGHPWVGDFE 238 (461)
T ss_pred CCCCchHHHHHHHHHHHHhcCCcccCCC
Confidence 3789999999999999999999998765
No 48
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=20.82 E-value=65 Score=33.80 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=25.3
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHhhhccC
Q 039661 519 GDGGMKERVSELEKEYFSMKEALQKIVMTK 548 (597)
Q Consensus 519 ~~~~mr~rv~eLEkec~~mk~~~~k~~k~~ 548 (597)
..+.|+.||.+||||-..++.+++.+.+.-
T Consensus 216 ~~~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 216 KEDEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999988888876543
Done!