Query 039662
Match_columns 366
No_of_seqs 169 out of 1531
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 11:55:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 4.7E-35 1E-39 256.2 25.8 215 103-335 2-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 8.7E-16 1.9E-20 126.7 16.2 138 211-355 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 7.2E-15 1.6E-19 116.3 14.2 105 211-321 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.6 2.1E-12 4.5E-17 117.5 23.1 319 1-357 1-373 (373)
5 PHA02713 hypothetical protein; 99.1 2.9E-08 6.3E-13 97.6 22.8 209 102-343 299-543 (557)
6 PF12937 F-box-like: F-box-lik 99.0 2.7E-10 5.8E-15 72.8 3.0 42 3-44 1-42 (47)
7 PF00646 F-box: F-box domain; 99.0 3E-10 6.5E-15 73.0 2.5 46 1-46 1-46 (48)
8 PLN02153 epithiospecifier prot 98.9 7.4E-07 1.6E-11 82.7 23.6 205 117-342 51-293 (341)
9 PHA02713 hypothetical protein; 98.9 5.2E-07 1.1E-11 88.8 22.9 193 117-341 273-497 (557)
10 PLN02193 nitrile-specifier pro 98.9 1.1E-06 2.3E-11 85.1 24.2 205 117-342 194-419 (470)
11 PHA03098 kelch-like protein; P 98.9 3.7E-07 8.1E-12 90.0 21.2 192 117-341 312-519 (534)
12 PHA02790 Kelch-like protein; P 98.8 1.3E-06 2.9E-11 84.6 22.9 183 117-339 288-476 (480)
13 smart00256 FBOX A Receptor for 98.8 2.9E-09 6.2E-14 65.9 2.8 39 6-44 1-39 (41)
14 KOG4441 Proteins containing BT 98.7 1.8E-06 3.9E-11 85.0 19.5 207 102-341 328-554 (571)
15 TIGR03548 mutarot_permut cycli 98.6 1E-05 2.2E-10 74.5 22.0 194 118-341 41-287 (323)
16 KOG4441 Proteins containing BT 98.6 5.1E-06 1.1E-10 81.8 19.3 193 117-341 302-507 (571)
17 TIGR03547 muta_rot_YjhT mutatr 98.5 4E-05 8.6E-10 71.3 23.3 215 104-341 15-306 (346)
18 PLN02193 nitrile-specifier pro 98.5 6.1E-05 1.3E-09 72.9 24.0 174 181-361 194-385 (470)
19 PRK14131 N-acetylneuraminic ac 98.5 7.7E-05 1.7E-09 70.1 23.3 212 103-341 35-328 (376)
20 PHA03098 kelch-like protein; P 98.4 2.4E-05 5.2E-10 77.2 20.1 191 118-341 266-472 (534)
21 PLN02153 epithiospecifier prot 98.4 0.00014 3E-09 67.5 22.8 157 180-343 50-235 (341)
22 KOG4693 Uncharacterized conser 98.3 6.7E-05 1.4E-09 64.3 16.5 227 103-345 31-288 (392)
23 PHA02790 Kelch-like protein; P 98.2 0.00012 2.6E-09 71.1 18.8 144 179-341 286-431 (480)
24 PRK14131 N-acetylneuraminic ac 98.1 0.0018 3.8E-08 61.0 22.6 148 180-338 189-373 (376)
25 TIGR03548 mutarot_permut cycli 98.0 0.00032 6.9E-09 64.6 15.9 149 103-277 120-311 (323)
26 TIGR03547 muta_rot_YjhT mutatr 97.8 0.0039 8.4E-08 58.0 19.5 133 180-323 168-329 (346)
27 KOG4693 Uncharacterized conser 97.6 0.0014 3.1E-08 56.4 12.5 135 180-322 157-309 (392)
28 KOG1230 Protein containing rep 97.5 0.0035 7.6E-08 57.3 14.3 204 118-343 100-350 (521)
29 KOG2120 SCF ubiquitin ligase, 97.4 7.3E-05 1.6E-09 65.5 2.2 40 3-42 98-137 (419)
30 KOG0379 Kelch repeat-containin 97.3 0.036 7.8E-07 53.9 19.5 206 118-344 90-312 (482)
31 KOG0379 Kelch repeat-containin 97.1 0.062 1.3E-06 52.2 18.5 156 181-344 89-260 (482)
32 KOG2997 F-box protein FBX9 [Ge 96.8 0.00062 1.3E-08 60.0 2.0 45 3-47 107-156 (366)
33 KOG0281 Beta-TrCP (transducin 96.3 0.0028 6.1E-08 56.5 2.7 43 4-46 76-122 (499)
34 KOG1230 Protein containing rep 95.7 0.28 6E-06 45.4 12.5 146 181-334 99-276 (521)
35 PF02191 OLF: Olfactomedin-lik 94.7 1.2 2.6E-05 39.2 13.3 123 206-342 69-212 (250)
36 PF13964 Kelch_6: Kelch motif 93.0 0.25 5.3E-06 31.3 4.5 37 209-245 5-44 (50)
37 COG4257 Vgb Streptogramin lyas 93.0 5.8 0.00013 35.1 13.9 221 100-342 65-314 (353)
38 smart00284 OLF Olfactomedin-li 92.4 5.3 0.00011 35.2 13.2 123 206-342 74-217 (255)
39 PF07893 DUF1668: Protein of u 91.9 8.5 0.00019 35.7 14.9 129 105-250 75-223 (342)
40 COG4257 Vgb Streptogramin lyas 91.8 2.3 5E-05 37.5 10.0 107 117-250 211-318 (353)
41 KOG0274 Cdc4 and related F-box 91.6 15 0.00033 36.3 21.9 43 3-45 108-150 (537)
42 KOG4152 Host cell transcriptio 91.2 2.8 6E-05 40.1 10.6 92 117-223 58-154 (830)
43 PF01344 Kelch_1: Kelch motif; 91.1 0.74 1.6E-05 28.5 5.0 36 209-244 5-43 (47)
44 PF13964 Kelch_6: Kelch motif 90.3 0.63 1.4E-05 29.4 4.2 22 178-199 26-47 (50)
45 PF07762 DUF1618: Protein of u 90.1 2.1 4.6E-05 33.4 8.0 67 230-302 7-98 (131)
46 PF13360 PQQ_2: PQQ-like domai 89.8 12 0.00026 32.1 18.7 191 105-340 35-237 (238)
47 PF02897 Peptidase_S9_N: Proly 89.6 19 0.00041 34.1 17.2 118 213-341 285-412 (414)
48 TIGR01640 F_box_assoc_1 F-box 89.1 14 0.0003 31.9 13.2 118 213-342 3-136 (230)
49 KOG4341 F-box protein containi 88.6 0.24 5.3E-06 46.0 1.7 38 4-41 73-110 (483)
50 smart00612 Kelch Kelch domain. 88.6 1.2 2.5E-05 27.3 4.4 19 179-197 14-32 (47)
51 PF07250 Glyoxal_oxid_N: Glyox 87.6 10 0.00022 33.2 10.9 169 179-360 45-225 (243)
52 PF10282 Lactonase: Lactonase, 86.7 26 0.00057 32.4 21.1 171 147-341 145-332 (345)
53 PF07646 Kelch_2: Kelch motif; 86.4 2.3 5E-05 26.7 4.9 38 209-246 5-47 (49)
54 PF08450 SGL: SMP-30/Gluconola 85.6 23 0.00051 30.7 20.2 196 103-343 8-223 (246)
55 PF10282 Lactonase: Lactonase, 85.6 24 0.00052 32.7 13.2 114 215-341 154-285 (345)
56 PF01344 Kelch_1: Kelch motif; 85.2 1.5 3.3E-05 27.0 3.5 32 161-196 13-44 (47)
57 PF07893 DUF1668: Protein of u 83.4 26 0.00055 32.5 12.2 54 181-239 200-254 (342)
58 PF13360 PQQ_2: PQQ-like domai 79.7 38 0.00082 28.9 18.5 136 181-340 4-147 (238)
59 KOG2106 Uncharacterized conser 78.5 67 0.0014 31.1 13.8 69 280-354 388-457 (626)
60 KOG0310 Conserved WD40 repeat- 78.1 65 0.0014 30.8 14.0 152 180-355 48-207 (487)
61 PF13418 Kelch_4: Galactose ox 78.0 5.2 0.00011 24.9 4.1 35 210-244 6-44 (49)
62 PF08450 SGL: SMP-30/Gluconola 77.3 48 0.001 28.8 14.9 104 215-340 11-129 (246)
63 smart00564 PQQ beta-propeller 77.2 9.1 0.0002 21.3 4.7 26 314-339 5-30 (33)
64 KOG3545 Olfactomedin and relat 76.9 50 0.0011 28.8 11.1 123 206-342 68-211 (249)
65 PF12458 DUF3686: ATPase invol 74.5 62 0.0014 30.6 11.4 144 100-290 230-384 (448)
66 cd01207 Ena-Vasp Enabled-VASP- 74.0 15 0.00032 27.8 6.2 41 118-166 11-51 (111)
67 TIGR03075 PQQ_enz_alc_DH PQQ-d 73.5 93 0.002 30.8 13.4 113 209-339 63-195 (527)
68 PF01011 PQQ: PQQ enzyme repea 71.4 8.9 0.00019 22.5 3.7 26 316-341 1-26 (38)
69 PF07646 Kelch_2: Kelch motif; 70.3 10 0.00022 23.7 4.0 34 161-196 13-46 (49)
70 COG3386 Gluconolactonase [Carb 69.9 88 0.0019 28.5 11.6 107 215-339 36-157 (307)
71 COG4946 Uncharacterized protei 69.3 86 0.0019 30.2 11.1 121 209-341 229-398 (668)
72 PF13418 Kelch_4: Galactose ox 68.7 4.5 9.8E-05 25.2 2.1 19 117-135 30-48 (49)
73 PF13013 F-box-like_2: F-box-l 65.6 4.5 9.8E-05 30.5 1.9 29 3-31 22-50 (109)
74 PRK11138 outer membrane biogen 63.8 1.3E+02 0.0028 28.3 22.2 188 104-339 118-318 (394)
75 COG1520 FOG: WD40-like repeat 62.8 1.3E+02 0.0029 28.0 12.1 134 181-340 36-178 (370)
76 PF03088 Str_synth: Strictosid 62.4 18 0.00039 26.2 4.4 18 324-341 36-53 (89)
77 COG2706 3-carboxymuconate cycl 62.2 1.3E+02 0.0028 27.7 14.4 116 215-342 155-285 (346)
78 COG3055 Uncharacterized protei 61.0 41 0.00089 31.0 7.3 111 181-303 114-268 (381)
79 PF13415 Kelch_3: Galactose ox 59.7 23 0.0005 21.9 4.2 22 179-200 18-39 (49)
80 PLN02772 guanylate kinase 57.8 86 0.0019 29.7 9.1 73 208-290 27-106 (398)
81 TIGR03300 assembly_YfgL outer 53.7 1.9E+02 0.0041 26.9 21.1 101 103-241 62-167 (377)
82 cd01206 Homer Homer type EVH1 53.5 35 0.00076 25.6 4.7 39 117-166 12-51 (111)
83 TIGR03300 assembly_YfgL outer 51.3 2.1E+02 0.0045 26.6 22.5 190 104-339 103-303 (377)
84 PRK11138 outer membrane biogen 50.9 2.2E+02 0.0047 26.8 20.8 135 181-339 131-280 (394)
85 PF06433 Me-amine-dh_H: Methyl 50.3 2.1E+02 0.0046 26.5 11.8 118 215-339 195-326 (342)
86 PRK11028 6-phosphogluconolacto 47.1 2.2E+02 0.0048 25.8 14.0 118 215-341 185-314 (330)
87 KOG2502 Tub family proteins [G 46.0 14 0.0003 33.8 1.9 37 3-39 45-89 (355)
88 PF13570 PQQ_3: PQQ-like domai 44.4 39 0.00085 19.8 3.3 21 314-334 20-40 (40)
89 KOG0292 Vesicle coat complex C 41.2 83 0.0018 32.8 6.6 70 266-336 212-283 (1202)
90 PF15408 PH_7: Pleckstrin homo 40.6 13 0.00029 26.3 0.8 24 20-43 76-99 (104)
91 PRK04043 tolB translocation pr 40.5 3.4E+02 0.0073 26.0 12.1 111 215-340 198-316 (419)
92 COG2706 3-carboxymuconate cycl 39.6 3.1E+02 0.0067 25.3 21.3 153 181-341 168-331 (346)
93 PF15525 DUF4652: Domain of un 35.2 2.7E+02 0.0059 23.4 7.7 18 324-341 139-156 (200)
94 KOG2321 WD40 repeat protein [G 34.4 2.3E+02 0.005 28.1 8.1 115 100-240 181-297 (703)
95 TIGR03074 PQQ_membr_DH membran 33.1 5.9E+02 0.013 26.7 13.3 32 208-243 187-220 (764)
96 KOG0293 WD40 repeat-containing 32.1 1.7E+02 0.0037 27.7 6.6 71 266-340 403-477 (519)
97 KOG0316 Conserved WD40 repeat- 31.8 3.5E+02 0.0077 23.7 13.6 180 105-337 27-217 (307)
98 TIGR03866 PQQ_ABC_repeats PQQ- 31.2 3.5E+02 0.0075 23.4 14.7 119 215-344 167-291 (300)
99 KOG3926 F-box proteins [Amino 31.2 41 0.00089 29.7 2.4 39 3-41 202-241 (332)
100 KOG0295 WD40 repeat-containing 30.9 3.7E+02 0.0079 25.1 8.4 57 280-339 312-370 (406)
101 KOG4547 WD40 repeat-containing 30.7 5.4E+02 0.012 25.4 14.2 111 228-355 79-195 (541)
102 PRK05137 tolB translocation pr 30.6 4.8E+02 0.01 24.9 19.6 185 116-341 226-420 (435)
103 KOG0279 G protein beta subunit 30.0 2.7E+02 0.0059 24.9 7.2 66 266-337 200-266 (315)
104 KOG2055 WD40 repeat protein [G 29.6 2.4E+02 0.0051 27.1 7.2 62 280-341 233-296 (514)
105 PF14339 DUF4394: Domain of un 29.0 2E+02 0.0044 25.1 6.3 55 104-164 36-92 (236)
106 KOG2055 WD40 repeat protein [G 28.5 5.5E+02 0.012 24.8 16.3 102 228-340 279-381 (514)
107 PF13088 BNR_2: BNR repeat-lik 27.6 4.1E+02 0.009 23.1 12.9 126 182-320 136-275 (275)
108 PF00568 WH1: WH1 domain; Int 27.4 1.6E+02 0.0035 22.0 5.0 38 117-166 17-55 (111)
109 cd00837 EVH1 EVH1 (Enabled, Va 27.0 2E+02 0.0043 21.3 5.3 40 117-167 10-49 (104)
110 PF12768 Rax2: Cortical protei 26.7 3E+02 0.0064 24.8 7.2 66 178-246 14-81 (281)
111 KOG0289 mRNA splicing factor [ 24.8 6.3E+02 0.014 24.3 11.9 120 181-320 370-492 (506)
112 KOG0293 WD40 repeat-containing 24.3 5.4E+02 0.012 24.5 8.3 51 280-335 332-386 (519)
113 KOG4378 Nuclear protein COP1 [ 24.2 2.5E+02 0.0054 27.4 6.3 57 310-366 256-320 (673)
114 KOG0289 mRNA splicing factor [ 24.1 3E+02 0.0065 26.3 6.8 62 269-334 358-420 (506)
115 KOG0647 mRNA export protein (c 24.0 5.6E+02 0.012 23.4 8.4 66 280-346 48-115 (347)
116 PF14298 DUF4374: Domain of un 23.7 6.7E+02 0.014 24.2 11.6 62 179-241 366-428 (435)
117 KOG4408 Putative Mg2+ and Co2+ 23.2 20 0.00044 32.6 -0.8 38 2-39 7-44 (386)
118 PF14583 Pectate_lyase22: Olig 22.5 1.7E+02 0.0037 27.6 4.9 104 228-340 167-279 (386)
119 KOG1852 Cell cycle-associated 21.8 45 0.00097 26.7 0.9 28 16-43 144-173 (223)
120 COG4946 Uncharacterized protei 21.6 1E+02 0.0023 29.6 3.4 30 314-343 276-305 (668)
121 KOG1963 WD40 repeat protein [G 20.2 2.5E+02 0.0055 29.0 5.9 60 280-339 477-545 (792)
122 COG3055 Uncharacterized protei 20.0 7.3E+02 0.016 23.2 9.4 84 209-303 40-134 (381)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=4.7e-35 Score=256.17 Aligned_cols=215 Identities=26% Similarity=0.402 Sum_probs=160.2
Q ss_pred eeecceEEEeecCCeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceE
Q 039662 103 GPYDGIFCLLKSHTLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHV 182 (366)
Q Consensus 103 ~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 182 (366)
+|||||||+.... .++||||+||+++.||+++..... .....++||||+.+++||||++.... .......+
T Consensus 2 ~sCnGLlc~~~~~-~~~V~NP~T~~~~~LP~~~~~~~~---~~~~~~~~G~d~~~~~YKVv~~~~~~-----~~~~~~~~ 72 (230)
T TIGR01640 2 VPCDGLICFSYGK-RLVVWNPSTGQSRWLPTPKSRRSN---KESDTYFLGYDPIEKQYKVLCFSDRS-----GNRNQSEH 72 (230)
T ss_pred cccceEEEEecCC-cEEEECCCCCCEEecCCCCCcccc---cccceEEEeecccCCcEEEEEEEeec-----CCCCCccE
Confidence 6899999998764 499999999999999976542110 11125899999999999999997621 11234689
Q ss_pred EEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCC-Cc-eEEEEEeCCCceee-EeCCCCCCCCCCccccc
Q 039662 183 AVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPD-YS-KAILSFSMSDEVFE-EMEGPSVPQSTTYYQSV 259 (366)
Q Consensus 183 ~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~-~~Il~fD~~~~~~~-~i~~P~~~~~~~~~~~l 259 (366)
+||++++++||.++. .+. .......+|++||++||++.... .. ..|++||+++|+|+ .+++|...........|
T Consensus 73 ~Vys~~~~~Wr~~~~--~~~-~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L 149 (230)
T TIGR01640 73 QVYTLGSNSWRTIEC--SPP-HHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSL 149 (230)
T ss_pred EEEEeCCCCcccccc--CCC-CccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEE
Confidence 999999999999952 121 11222349999999999985432 12 37999999999999 58999765322223456
Q ss_pred cccceeeEecCeEEEEEeCCCCCEEEEEEee--C-CeeeEEEEecC--CCcc---eeeEEEeeCCeEEEEEcC--Ce-EE
Q 039662 260 KTPWMLGTYDDCLSLLYSDSFAHTFELWTMT--G-GNWTKHSTFGP--FIET---YQPIGFWRKGEFFLESSD--KR-VV 328 (366)
Q Consensus 260 ~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~--~-~~W~~~~~i~~--~~~~---~~~~~~~~~g~i~~~~~~--~~-~~ 328 (366)
++++|+||++........++||+|+ + ..|+|+++|+. ...+ ..++++.++|+|++...+ +. ++
T Consensus 150 ------~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~ 223 (230)
T TIGR01640 150 ------INYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIF 223 (230)
T ss_pred ------EEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEE
Confidence 9999999999775444679999998 3 67999999984 2222 347888899999988764 44 99
Q ss_pred EEECCCC
Q 039662 329 LYDSTYQ 335 (366)
Q Consensus 329 ~yd~~~~ 335 (366)
+||++++
T Consensus 224 ~y~~~~~ 230 (230)
T TIGR01640 224 YYNVGEN 230 (230)
T ss_pred EEeccCC
Confidence 9999875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.70 E-value=8.7e-16 Score=126.73 Aligned_cols=138 Identities=20% Similarity=0.319 Sum_probs=97.4
Q ss_pred eEEECceEEEEEecCCCce--EEEEEeCCCcee-eEeCCCCCCCCCCccccccccceeeEe-cCeEEEEEeCCCCCEEEE
Q 039662 211 NVYLNGFCYWVVCRPDYSK--AILSFSMSDEVF-EEMEGPSVPQSTTYYQSVKTPWMLGTY-DDCLSLLYSDSFAHTFEL 286 (366)
Q Consensus 211 ~v~~~G~lywl~~~~~~~~--~Il~fD~~~~~~-~~i~~P~~~~~~~~~~~l~~~~~~~~~-~G~L~~~~~~~~~~~~~I 286 (366)
+|++||++||++....... .|++||+++|+| ..+++|...........| ... +|+||+++.......++|
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L------~~v~~~~L~~~~~~~~~~~~~I 74 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSL------SVVRGDCLCVLYQCDETSKIEI 74 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEE------EEecCCEEEEEEeccCCccEEE
Confidence 6899999999996544332 799999999999 889999877533334445 444 789999976556677999
Q ss_pred EEee--C---CeeeEEEEecCCCc--c-----eeeEEEeeCCeEEEEEc---C----CeEEEEECCCCeEEEEEEeCc--
Q 039662 287 WTMT--G---GNWTKHSTFGPFIE--T-----YQPIGFWRKGEFFLESS---D----KRVVLYDSTYQEMRDIRITGL-- 345 (366)
Q Consensus 287 W~l~--~---~~W~~~~~i~~~~~--~-----~~~~~~~~~g~i~~~~~---~----~~~~~yd~~~~~~~~i~~~~~-- 345 (366)
|+|+ | ++|+|.++|+.... . ...+.+.+++++++..+ + ..++.++ +++..+++.+...
T Consensus 75 Wvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~ 153 (164)
T PF07734_consen 75 WVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSS 153 (164)
T ss_pred EEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCC
Confidence 9999 3 69999999985321 1 12233445556666543 1 4577787 7778888776321
Q ss_pred E-EEEEEeeec
Q 039662 346 W-FTVHVLKES 355 (366)
Q Consensus 346 ~-~~~~~y~~s 355 (366)
. ..++.|+||
T Consensus 154 ~~~~~~~YvpS 164 (164)
T PF07734_consen 154 CWPSICNYVPS 164 (164)
T ss_pred CCCCEEEECCC
Confidence 2 567799987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.64 E-value=7.2e-15 Score=116.26 Aligned_cols=105 Identities=21% Similarity=0.449 Sum_probs=79.7
Q ss_pred eEEECceEEEEEec-CCCceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceeeEecCeEEEEEeCCC--CCEEEEE
Q 039662 211 NVYLNGFCYWVVCR-PDYSKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSF--AHTFELW 287 (366)
Q Consensus 211 ~v~~~G~lywl~~~-~~~~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~--~~~~~IW 287 (366)
|+++||++||++.. ......|++||+++|+|+.|++|...........| .+++|+|+++..... ...++||
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L------~~~~G~L~~v~~~~~~~~~~~~iW 74 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTL------IEYKGKLALVSYNDQGEPDSIDIW 74 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEE------EEeCCeEEEEEecCCCCcceEEEE
Confidence 68999999999975 23477899999999999999999222222234566 999999999966433 3579999
Q ss_pred Eee--C-CeeeEEEEecCCC-------cceeeEEEeeCCeEEEE
Q 039662 288 TMT--G-GNWTKHSTFGPFI-------ETYQPIGFWRKGEFFLE 321 (366)
Q Consensus 288 ~l~--~-~~W~~~~~i~~~~-------~~~~~~~~~~~g~i~~~ 321 (366)
+|+ + ++|++.+.+-+.. ....+.++.++|+|++.
T Consensus 75 vLeD~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 75 VLEDYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred EeeccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 999 3 7999987755421 23567788888998887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.55 E-value=2.1e-12 Score=117.51 Aligned_cols=319 Identities=13% Similarity=0.071 Sum_probs=159.9
Q ss_pred CC-ccCCcHHHHHHHHhcCC-hhhhhhheechhhhhhhcCChHHHHHHHhhcCcCCCcceEEEecCCCCCCccceeeeee
Q 039662 1 MT-VKYLSDDMMIETLSRLP-VKSLMRFQCVCKSWYDLVKDPNFIYKHLKRDNNMRLMVYCTYKNPDDRDPFDDLITYFS 78 (366)
Q Consensus 1 ma-~~~LP~Dll~eIL~rLP-~~sl~r~~~VcK~W~~li~~~~F~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 78 (366)
|+ +++||+|||..|..||| .-+++|+|+|||+||+.+.... + .++.+. +|+++..... +.. ++.
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~----~~~~~~-~~~~~~~~~~--~~~----~~~ 66 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K----KNPFRT-RPLILFNPIN--PSE----TLT 66 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c----cCCccc-ccccccCccc--CCC----Ccc
Confidence 66 79999999999999997 5699999999999999876411 0 000000 2333321110 000 000
Q ss_pred cCCCCCccccccCCCcCCCCCeEE----eeecceEEEeecC---CeEEEEeCCCcceeecCCCCCCCCC-cccccceeeE
Q 039662 79 VFPDKTLTDLHFQDLQPIMKGIHI----GPYDGIFCLLKSH---TLINLWNVSLNEYRVIPECRPRLPL-YTKTHYANVA 150 (366)
Q Consensus 79 ~~~~~~~~~~~~~~l~p~~~~~~i----~s~~GLl~~~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~~~~~~ 150 (366)
.+ +..... ...++.+ ..-+.+ ++..|+|.-...+ +.+.+.||+++....+|+....... ....-...+.
T Consensus 67 ~~-~~~~~~-~~~~ls~-~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~ 143 (373)
T PLN03215 67 DD-RSYISR-PGAFLSR-AAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQ 143 (373)
T ss_pred cc-cccccc-ccceeee-eEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEE
Confidence 00 000000 0011101 000222 4567888776543 4699999999998877753321110 0000001111
Q ss_pred E-eecCCC---CCeEEEEEEeeecccCCCCCCcceEEEEEcC------CCceeecCCCccccceeecccceEEECceEEE
Q 039662 151 L-GLDPVT---KDFKLVLILTLWNDHRDSFHDFSHVAVYKFS------TNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYW 220 (366)
Q Consensus 151 ~-g~d~~~---~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~------~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lyw 220 (366)
+ +.+... -.|+-+.+... ...+......+.|+.-+ .++|..++ ... ......++.+|.+|-
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~---~~~---~~~~DIi~~kGkfYA 214 (373)
T PLN03215 144 VLDWAKRRETRPGYQRSALVKV---KEGDNHRDGVLGIGRDGKINYWDGNVLKALK---QMG---YHFSDIIVHKGQTYA 214 (373)
T ss_pred EEecccccccccceeEEEEEEe---ecCCCcceEEEEEeecCcEeeecCCeeeEcc---CCC---ceeeEEEEECCEEEE
Confidence 1 111000 01321111110 00111112223333221 47888883 111 123678999999999
Q ss_pred EEecCCCceEEEEEeCCCceeeEeCCCCC--CCCC--CccccccccceeeEecCeEEEEEeCC---------------CC
Q 039662 221 VVCRPDYSKAILSFSMSDEVFEEMEGPSV--PQST--TYYQSVKTPWMLGTYDDCLSLLYSDS---------------FA 281 (366)
Q Consensus 221 l~~~~~~~~~Il~fD~~~~~~~~i~~P~~--~~~~--~~~~~l~~~~~~~~~~G~L~~~~~~~---------------~~ 281 (366)
+. .. +.+.++|.+- +.+.+..+-. ...+ .....| ++..|+|.++.... ..
T Consensus 215 vD--~~--G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yL------VEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t 283 (373)
T PLN03215 215 LD--SI--GIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRF------VECCGELYIVERLPKESTWKRKADGFEYSRT 283 (373)
T ss_pred Ec--CC--CeEEEEecCC-ceeeecceecccccCCcccCceeE------EEECCEEEEEEEEccCcccccccccccccce
Confidence 84 32 3466666332 1222211110 1001 112445 99999999995411 13
Q ss_pred CEEEEEEee-C-CeeeEEEEecCCC---cceeeEEE-------eeCCeEEEEEcCCeEEEEECCCCeEEEEEEe--CcE-
Q 039662 282 HTFELWTMT-G-GNWTKHSTFGPFI---ETYQPIGF-------WRKGEFFLESSDKRVVLYDSTYQEMRDIRIT--GLW- 346 (366)
Q Consensus 282 ~~~~IW~l~-~-~~W~~~~~i~~~~---~~~~~~~~-------~~~g~i~~~~~~~~~~~yd~~~~~~~~i~~~--~~~- 346 (366)
..++|+.++ + .+|.++..++-.- +.....++ .+.+-|++. ++....+||++.++...+... ...
T Consensus 284 ~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt-dd~~~~v~~~~dg~~~~~~~~~~~~~~ 362 (373)
T PLN03215 284 VGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT-EDTMPKVFKLDNGNGSSIETTISESSQ 362 (373)
T ss_pred eEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE-CCCcceEEECCCCCccceEeecCcccc
Confidence 568899998 3 8999998886210 00011111 123456666 467888999999997766532 111
Q ss_pred EEEEEeeeccc
Q 039662 347 FTVHVLKESLI 357 (366)
Q Consensus 347 ~~~~~y~~slv 357 (366)
..+-+|++|++
T Consensus 363 ~~~~~~~~~~~ 373 (373)
T PLN03215 363 SSFEMFVPSFL 373 (373)
T ss_pred chheeeccccC
Confidence 34557777753
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.08 E-value=2.9e-08 Score=97.63 Aligned_cols=209 Identities=10% Similarity=0.101 Sum_probs=131.1
Q ss_pred EeeecceEEEeecC-------CeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCC
Q 039662 102 IGPYDGIFCLLKSH-------TLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRD 174 (366)
Q Consensus 102 i~s~~GLl~~~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~ 174 (366)
++..+|-|.+..+. ..+..+||.+++|..+|+.+..+ .. ..+..++. ||..++. . +
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R-----~~--~~~~~~~g-----~IYviGG----~-~ 361 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR-----CR--FSLAVIDD-----TIYAIGG----Q-N 361 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh-----hc--eeEEEECC-----EEEEECC----c-C
Confidence 35556666544331 24889999999999999887532 11 12223332 6777765 1 1
Q ss_pred CCCCcceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCC--------------------ceEEEEE
Q 039662 175 SFHDFSHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDY--------------------SKAILSF 234 (366)
Q Consensus 175 ~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--------------------~~~Il~f 234 (366)
+......+++|+..++.|+.++.++.+. .....+.++|.+|.+++.... ...+.+|
T Consensus 362 ~~~~~~sve~Ydp~~~~W~~~~~mp~~r----~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~Y 437 (557)
T PHA02713 362 GTNVERTIECYTMGDDKWKMLPDMPIAL----SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRY 437 (557)
T ss_pred CCCCCceEEEEECCCCeEEECCCCCccc----ccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEE
Confidence 1122347999999999999996433332 224567889999999853210 2458999
Q ss_pred eCCCceeeEeC-CCCCCCCCCccccccccceeeEecCeEEEEEeCCCCCE-E-EEEEee-C--CeeeEEEEecCCCccee
Q 039662 235 SMSDEVFEEME-GPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSFAHT-F-ELWTMT-G--GNWTKHSTFGPFIETYQ 308 (366)
Q Consensus 235 D~~~~~~~~i~-~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~~~~-~-~IW~l~-~--~~W~~~~~i~~~~~~~~ 308 (366)
|+.+++|+.+. +|... ....+ ++.+|+|+++........ . .+-..+ + .+|+..-.++.......
T Consensus 438 DP~td~W~~v~~m~~~r----~~~~~------~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 438 DTVNNIWETLPNFWTGT----IRPGV------VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred CCCCCeEeecCCCCccc----ccCcE------EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 99999998773 33322 12345 889999999964322111 1 244455 3 48998877664322112
Q ss_pred eEEEeeCCeEEEEEc-CC--eEEEEECCCCeEEEEEEe
Q 039662 309 PIGFWRKGEFFLESS-DK--RVVLYDSTYQEMRDIRIT 343 (366)
Q Consensus 309 ~~~~~~~g~i~~~~~-~~--~~~~yd~~~~~~~~i~~~ 343 (366)
.+ .-+|.|+++.. ++ .+-.||++|++|+.+.-+
T Consensus 508 ~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 508 TI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred eE--EECCEEEEEeeecceeehhhcCcccccccchhhh
Confidence 22 23678887754 22 578999999999987643
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.00 E-value=2.7e-10 Score=72.82 Aligned_cols=42 Identities=26% Similarity=0.634 Sum_probs=36.3
Q ss_pred ccCCcHHHHHHHHhcCChhhhhhheechhhhhhhcCChHHHH
Q 039662 3 VKYLSDDMMIETLSRLPVKSLMRFQCVCKSWYDLVKDPNFIY 44 (366)
Q Consensus 3 ~~~LP~Dll~eIL~rLP~~sl~r~~~VcK~W~~li~~~~F~~ 44 (366)
+..||+|++.+||..||++++.+++.|||+|++++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 468999999999999999999999999999999998885543
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.97 E-value=3e-10 Score=73.03 Aligned_cols=46 Identities=35% Similarity=0.548 Sum_probs=38.7
Q ss_pred CCccCCcHHHHHHHHhcCChhhhhhheechhhhhhhcCChHHHHHH
Q 039662 1 MTVKYLSDDMMIETLSRLPVKSLMRFQCVCKSWYDLVKDPNFIYKH 46 (366)
Q Consensus 1 ma~~~LP~Dll~eIL~rLP~~sl~r~~~VcK~W~~li~~~~F~~~~ 46 (366)
|.+..||+|++.+||.+|+++++++++.|||+|++++.++.+...+
T Consensus 1 ~~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 1 FPLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp -HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred CCHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 4567899999999999999999999999999999999999886654
No 8
>PLN02153 epithiospecifier protein
Probab=98.91 E-value=7.4e-07 Score=82.68 Aligned_cols=205 Identities=10% Similarity=0.088 Sum_probs=118.9
Q ss_pred eEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCceeecC
Q 039662 117 LINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDLE 196 (366)
Q Consensus 117 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 196 (366)
.++++||.+.+|..+|+....... .........++ + ||+.+.. . +.......+++|+..++.|+.++
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~---~~~~~~~~~~~---~--~iyv~GG----~-~~~~~~~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRI---SCLGVRMVAVG---T--KLYIFGG----R-DEKREFSDFYSYDTVKNEWTFLT 117 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCC---ccCceEEEEEC---C--EEEEECC----C-CCCCccCcEEEEECCCCEEEEec
Confidence 489999999999998865421110 00011122222 1 5666654 1 11122347899999999999885
Q ss_pred CCccc--cceeecccceEEECceEEEEEecCCC--------ceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceee
Q 039662 197 GFEMR--YDYMVDRIFNVYLNGFCYWVVCRPDY--------SKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLG 266 (366)
Q Consensus 197 ~~~~~--~~~~~~~~~~v~~~G~lywl~~~~~~--------~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~ 266 (366)
.++.. +.. ......+..+|.+|.++....+ -..+.+||+++.+|..++.+...........+ +
T Consensus 118 ~~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~------~ 190 (341)
T PLN02153 118 KLDEEGGPEA-RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGF------A 190 (341)
T ss_pred cCCCCCCCCC-ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceE------E
Confidence 33110 111 1234567789999999753211 13588999999999987543211111112344 7
Q ss_pred EecCeEEEEEeCC---------CCCEEEEEEee--CCeeeEEEEecCC--CcceeeEEEeeCCeEEEEEcC---------
Q 039662 267 TYDDCLSLLYSDS---------FAHTFELWTMT--GGNWTKHSTFGPF--IETYQPIGFWRKGEFFLESSD--------- 324 (366)
Q Consensus 267 ~~~G~L~~~~~~~---------~~~~~~IW~l~--~~~W~~~~~i~~~--~~~~~~~~~~~~g~i~~~~~~--------- 324 (366)
..+|+|+++.... ....-++++++ ..+|+++...... ....+.. +.-++.|++....
T Consensus 191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~ 269 (341)
T PLN02153 191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDLKGHL 269 (341)
T ss_pred EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCcccccc
Confidence 7899999884311 01122577777 4889988654321 1111222 2234666665331
Q ss_pred ------CeEEEEECCCCeEEEEEE
Q 039662 325 ------KRVVLYDSTYQEMRDIRI 342 (366)
Q Consensus 325 ------~~~~~yd~~~~~~~~i~~ 342 (366)
+.++.||+++++|+.+..
T Consensus 270 ~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 270 GPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred ccccccccEEEEEcCccEEEeccC
Confidence 368999999999998863
No 9
>PHA02713 hypothetical protein; Provisional
Probab=98.89 E-value=5.2e-07 Score=88.85 Aligned_cols=193 Identities=12% Similarity=0.133 Sum_probs=119.4
Q ss_pred eEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCceeecC
Q 039662 117 LINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDLE 196 (366)
Q Consensus 117 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 196 (366)
.+..+||.|++|..+++.+... ... .....+. +|+.++. ..........++.|+..++.|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r-----~~~--~~a~l~~-----~IYviGG----~~~~~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHI-----INY--ASAIVDN-----EIIIAGG----YNFNNPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccc-----cce--EEEEECC-----EEEEEcC----CCCCCCccceEEEEECCCCeEeeCC
Confidence 3678999999999999877532 111 1122221 5666654 1111112347899999999999986
Q ss_pred CCccccceeecccceEEECceEEEEEecCCC--ceEEEEEeCCCceeeEeC-CCCCCCCCCccccccccceeeEecCeEE
Q 039662 197 GFEMRYDYMVDRIFNVYLNGFCYWVVCRPDY--SKAILSFSMSDEVFEEME-GPSVPQSTTYYQSVKTPWMLGTYDDCLS 273 (366)
Q Consensus 197 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~Il~fD~~~~~~~~i~-~P~~~~~~~~~~~l~~~~~~~~~~G~L~ 273 (366)
.++.+. .....+.++|.+|-+++.... ...+-+||+.+++|+.+. +|.... .... +.++|+|+
T Consensus 337 ~m~~~R----~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~----~~~~------~~~~g~IY 402 (557)
T PHA02713 337 PMIKNR----CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS----SYGM------CVLDQYIY 402 (557)
T ss_pred CCcchh----hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc----cccE------EEECCEEE
Confidence 333222 224677889999999864221 345899999999998873 444321 2344 78899999
Q ss_pred EEEeCCCCC-------------------EEEEEEee-C-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEcC-------C
Q 039662 274 LLYSDSFAH-------------------TFELWTMT-G-GNWTKHSTFGPFIETYQPIGFWRKGEFFLESSD-------K 325 (366)
Q Consensus 274 ~~~~~~~~~-------------------~~~IW~l~-~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~-------~ 325 (366)
++....... .-.+...+ + ..|+.+-.+..... ..-.+.-+|.|+++.+. .
T Consensus 403 viGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~--~~~~~~~~~~IYv~GG~~~~~~~~~ 480 (557)
T PHA02713 403 IIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI--RPGVVSHKDDIYVVCDIKDEKNVKT 480 (557)
T ss_pred EEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc--cCcEEEECCEEEEEeCCCCCCccce
Confidence 996422110 11344555 3 78987665543211 12222346788877531 2
Q ss_pred eEEEEECCC-CeEEEEE
Q 039662 326 RVVLYDSTY-QEMRDIR 341 (366)
Q Consensus 326 ~~~~yd~~~-~~~~~i~ 341 (366)
.+..||+++ ++|+.+.
T Consensus 481 ~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 481 CIFRYNTNTYNGWELIT 497 (557)
T ss_pred eEEEecCCCCCCeeEcc
Confidence 367999999 8999865
No 10
>PLN02193 nitrile-specifier protein
Probab=98.87 E-value=1.1e-06 Score=85.06 Aligned_cols=205 Identities=11% Similarity=0.093 Sum_probs=121.9
Q ss_pred eEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCceeecC
Q 039662 117 LINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDLE 196 (366)
Q Consensus 117 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 196 (366)
.++++||.+.+|..+|+....+.. ......+..++. +++.+.. . +.....-.+++|++.++.|+.+.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~---~~~~~~~v~~~~-----~lYvfGG----~-~~~~~~ndv~~yD~~t~~W~~l~ 260 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHL---SCLGVRMVSIGS-----TLYVFGG----R-DASRQYNGFYSFDTTTNEWKLLT 260 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCC---cccceEEEEECC-----EEEEECC----C-CCCCCCccEEEEECCCCEEEEcC
Confidence 388999999999988754221100 000111222221 4555543 1 11112347889999999999985
Q ss_pred CCccccceeecccceEEECceEEEEEecCC--CceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceeeEecCeEEE
Q 039662 197 GFEMRYDYMVDRIFNVYLNGFCYWVVCRPD--YSKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLGTYDDCLSL 274 (366)
Q Consensus 197 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~ 274 (366)
.....+.. ......+..++.+|.+..... ....+.+||+.+.+|+.++.|...........+ +..+|++++
T Consensus 261 ~~~~~P~~-R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~------~~~~gkiyv 333 (470)
T PLN02193 261 PVEEGPTP-RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGL------EVVQGKVWV 333 (470)
T ss_pred cCCCCCCC-ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEE------EEECCcEEE
Confidence 33111111 122455678999999975322 134588999999999988665432211122344 777999998
Q ss_pred EEeCCCCCEEEEEEee--CCeeeEEEEec--CCCcceeeEEEeeCCeEEEEEcC---------------CeEEEEECCCC
Q 039662 275 LYSDSFAHTFELWTMT--GGNWTKHSTFG--PFIETYQPIGFWRKGEFFLESSD---------------KRVVLYDSTYQ 335 (366)
Q Consensus 275 ~~~~~~~~~~~IW~l~--~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~~---------------~~~~~yd~~~~ 335 (366)
+........-++|+++ ..+|+++..+. +.....+.. +.-++.|++.... ..+..||++|+
T Consensus 334 iGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 334 VYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred EECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 8643222345788888 48899987653 211122222 2335667665431 24899999999
Q ss_pred eEEEEEE
Q 039662 336 EMRDIRI 342 (366)
Q Consensus 336 ~~~~i~~ 342 (366)
+|+.+..
T Consensus 413 ~W~~~~~ 419 (470)
T PLN02193 413 QWERLDK 419 (470)
T ss_pred EEEEccc
Confidence 9998873
No 11
>PHA03098 kelch-like protein; Provisional
Probab=98.87 E-value=3.7e-07 Score=89.99 Aligned_cols=192 Identities=11% Similarity=0.086 Sum_probs=120.4
Q ss_pred eEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCceeecC
Q 039662 117 LINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDLE 196 (366)
Q Consensus 117 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 196 (366)
.++.+||.|++|..+|+.+..+ ... .+...+. +++.++. . +.......+++|+..+++|+..+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R-----~~~--~~~~~~~-----~lyv~GG----~-~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPR-----KNP--GVTVFNN-----RIYVIGG----I-YNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred cEEEEeCCCCeeeECCCCCccc-----ccc--eEEEECC-----EEEEEeC----C-CCCEecceEEEEcCCCCceeeCC
Confidence 4899999999999999876422 111 1222221 4666654 1 11123347899999999999986
Q ss_pred CCccccceeecccceEEECceEEEEEecCCC---ceEEEEEeCCCceeeEeC-CCCCCCCCCccccccccceeeEecCeE
Q 039662 197 GFEMRYDYMVDRIFNVYLNGFCYWVVCRPDY---SKAILSFSMSDEVFEEME-GPSVPQSTTYYQSVKTPWMLGTYDDCL 272 (366)
Q Consensus 197 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~---~~~Il~fD~~~~~~~~i~-~P~~~~~~~~~~~l~~~~~~~~~~G~L 272 (366)
.++.+. ....++.++|.+|-+++...+ ...+..||+.+++|+.+. +|.... .... +..+|+|
T Consensus 375 ~lp~~r----~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~----~~~~------~~~~~~i 440 (534)
T PHA03098 375 PLIFPR----YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY----GGCA------IYHDGKI 440 (534)
T ss_pred CcCcCC----ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc----CceE------EEECCEE
Confidence 433322 234567789999999753221 256899999999998874 443221 1234 7779999
Q ss_pred EEEEeCCCCC----EEEEEEee-C-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEc------CCeEEEEECCCCeEEEE
Q 039662 273 SLLYSDSFAH----TFELWTMT-G-GNWTKHSTFGPFIETYQPIGFWRKGEFFLESS------DKRVVLYDSTYQEMRDI 340 (366)
Q Consensus 273 ~~~~~~~~~~----~~~IW~l~-~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~~~~~~~i 340 (366)
+++....... .-.+|..+ . .+|++.-.++.. ......+. -++.|++... ...+..||+++++|+.+
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 9885421111 12377777 3 889986544322 11122222 3677777653 24689999999999876
Q ss_pred E
Q 039662 341 R 341 (366)
Q Consensus 341 ~ 341 (366)
.
T Consensus 519 ~ 519 (534)
T PHA03098 519 C 519 (534)
T ss_pred C
Confidence 5
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=98.82 E-value=1.3e-06 Score=84.58 Aligned_cols=183 Identities=10% Similarity=0.036 Sum_probs=115.2
Q ss_pred eEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCceeecC
Q 039662 117 LINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDLE 196 (366)
Q Consensus 117 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 196 (366)
....+||.+++|..+|+++... ... .+...+. +|..++. . + ....++.|+..+++|..++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r-----~~~--~~v~~~~-----~iYviGG----~-~---~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPR-----LYA--SGVPANN-----KLYVVGG----L-P---NPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred eEEEEECCCCEEEECCCCCchh-----hcc--eEEEECC-----EEEEECC----c-C---CCCceEEEECCCCeEEECC
Confidence 3778999999999999887532 111 1222221 6666654 1 1 1135799999999999986
Q ss_pred CCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceeeEecCeEEEEE
Q 039662 197 GFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLGTYDDCLSLLY 276 (366)
Q Consensus 197 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~ 276 (366)
.++.+. ....++.++|.+|.+++.......+-.||+++++|+.++.++.... .... +..+|+|+++.
T Consensus 348 ~l~~~r----~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~---~~~~------~~~~~~IYv~G 414 (480)
T PHA02790 348 SLLKPR----CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY---KSCA------LVFGRRLFLVG 414 (480)
T ss_pred CCCCCC----cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc---cceE------EEECCEEEEEC
Confidence 333222 2346788999999998543323457889999999998743332211 1244 78899999886
Q ss_pred eCCCCCEEEEEEeeCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEc------CCeEEEEECCCCeEEE
Q 039662 277 SDSFAHTFELWTMTGGNWTKHSTFGPFIETYQPIGFWRKGEFFLESS------DKRVVLYDSTYQEMRD 339 (366)
Q Consensus 277 ~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~~~~~~~ 339 (366)
. ..++.-.+...|+..-.++.... ...+. .-+|+|+++.+ -..+-.||+++++|+-
T Consensus 415 G-----~~e~ydp~~~~W~~~~~m~~~r~-~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 415 R-----NAEFYCESSNTWTLIDDPIYPRD-NPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred C-----ceEEecCCCCcEeEcCCCCCCcc-ccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 3 12222112378997765543211 12222 33678887753 1458899999999974
No 13
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.81 E-value=2.9e-09 Score=65.89 Aligned_cols=39 Identities=36% Similarity=0.773 Sum_probs=36.8
Q ss_pred CcHHHHHHHHhcCChhhhhhheechhhhhhhcCChHHHH
Q 039662 6 LSDDMMIETLSRLPVKSLMRFQCVCKSWYDLVKDPNFIY 44 (366)
Q Consensus 6 LP~Dll~eIL~rLP~~sl~r~~~VcK~W~~li~~~~F~~ 44 (366)
||+|++.+||.+|+++++.+++.|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.69 E-value=1.8e-06 Score=84.99 Aligned_cols=207 Identities=10% Similarity=0.114 Sum_probs=132.9
Q ss_pred EeeecceEEEeec-C------CeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCC
Q 039662 102 IGPYDGIFCLLKS-H------TLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRD 174 (366)
Q Consensus 102 i~s~~GLl~~~~~-~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~ 174 (366)
++..+|.|-...+ + .....+||.+.+|..+|+....+ . .++++.- ..+|.+++.. +
T Consensus 328 ~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R-----~---~~~v~~l----~g~iYavGG~-----d 390 (571)
T KOG4441|consen 328 VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR-----S---DFGVAVL----DGKLYAVGGF-----D 390 (571)
T ss_pred EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc-----c---cceeEEE----CCEEEEEecc-----c
Confidence 3667776655442 1 24899999999999999988642 1 1222221 2467777651 2
Q ss_pred CCCCcceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCC---ceEEEEEeCCCceeeEe-CCCCCC
Q 039662 175 SFHDFSHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDY---SKAILSFSMSDEVFEEM-EGPSVP 250 (366)
Q Consensus 175 ~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~---~~~Il~fD~~~~~~~~i-~~P~~~ 250 (366)
+......+|.|+..++.|..++.+.. . .....++.++|.+|-+++.... -..+-+||+.+++|+.+ +++...
T Consensus 391 g~~~l~svE~YDp~~~~W~~va~m~~--~--r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R 466 (571)
T KOG4441|consen 391 GEKSLNSVECYDPVTNKWTPVAPMLT--R--RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR 466 (571)
T ss_pred cccccccEEEecCCCCcccccCCCCc--c--eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc
Confidence 33345589999999999999963332 1 2235677899999999864332 36799999999999876 344332
Q ss_pred CCCCccccccccceeeEecCeEEEEEeCCCCCEE-EEEEee--CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEc----
Q 039662 251 QSTTYYQSVKTPWMLGTYDDCLSLLYSDSFAHTF-ELWTMT--GGNWTKHSTFGPFIETYQPIGFWRKGEFFLESS---- 323 (366)
Q Consensus 251 ~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~-~IW~l~--~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~---- 323 (366)
. ...+ +.++|+|+++........+ .|=..+ ...|..+..+..... ..-+..-++.++++..
T Consensus 467 ~----~~g~------a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs--~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 467 S----GFGV------AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS--AVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred c----cceE------EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc--cccEEEECCEEEEEecccCc
Confidence 1 2345 8999999999543332222 223333 378998854543221 1111223566766643
Q ss_pred --CCeEEEEECCCCeEEEEE
Q 039662 324 --DKRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 324 --~~~~~~yd~~~~~~~~i~ 341 (366)
-..+-.||+++++|+...
T Consensus 535 ~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 535 NNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred cccceeEEcCCCCCceeeCC
Confidence 245889999999999865
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.64 E-value=1e-05 Score=74.49 Aligned_cols=194 Identities=11% Similarity=0.111 Sum_probs=114.0
Q ss_pred EEEE-eCCCc-ceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCce---
Q 039662 118 INLW-NVSLN-EYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNSW--- 192 (366)
Q Consensus 118 ~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W--- 192 (366)
++++ +|..+ +|..+++.+... .. ..+..++. +|+.+.. . +.......++.|+..++.|
T Consensus 41 v~~~~~~~~~~~W~~~~~lp~~r------~~-~~~~~~~~-----~lyviGG----~-~~~~~~~~v~~~d~~~~~w~~~ 103 (323)
T TIGR03548 41 IYIAKDENSNLKWVKDGQLPYEA------AY-GASVSVEN-----GIYYIGG----S-NSSERFSSVYRITLDESKEELI 103 (323)
T ss_pred eEEEecCCCceeEEEcccCCccc------cc-eEEEEECC-----EEEEEcC----C-CCCCCceeEEEEEEcCCceeee
Confidence 5555 45433 788888666421 11 12223321 4666654 1 1112335788899999888
Q ss_pred -eecCCCccccceeecccceEEECceEEEEEecCC--CceEEEEEeCCCceeeEeC-CCCCCCCCCccccccccceeeEe
Q 039662 193 -RDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPD--YSKAILSFSMSDEVFEEME-GPSVPQSTTYYQSVKTPWMLGTY 268 (366)
Q Consensus 193 -~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~~~~~~i~-~P~~~~~~~~~~~l~~~~~~~~~ 268 (366)
+.++.++.+. ....++.++|.+|.++.... ....+.+||+.+++|+.++ +|..... .... +..
T Consensus 104 ~~~~~~lp~~~----~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~---~~~~------~~~ 170 (323)
T TIGR03548 104 CETIGNLPFTF----ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRV---QPVC------VKL 170 (323)
T ss_pred eeEcCCCCcCc----cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCC---cceE------EEE
Confidence 4553222221 23456788999999985322 1346999999999999884 5543211 2233 678
Q ss_pred cCeEEEEEeCCCCCEEEEEEee-C-CeeeEEEEecCC--C-c-ceeeEEEeeCCeEEEEEc-------------------
Q 039662 269 DDCLSLLYSDSFAHTFELWTMT-G-GNWTKHSTFGPF--I-E-TYQPIGFWRKGEFFLESS------------------- 323 (366)
Q Consensus 269 ~G~L~~~~~~~~~~~~~IW~l~-~-~~W~~~~~i~~~--~-~-~~~~~~~~~~g~i~~~~~------------------- 323 (366)
+|+|+++.........++|..+ . .+|+++..+... + . .........++.|++...
T Consensus 171 ~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 250 (323)
T TIGR03548 171 QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDE 250 (323)
T ss_pred CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccch
Confidence 9999999643222334677777 4 789876654211 1 1 111112223566766532
Q ss_pred -------------------CCeEEEEECCCCeEEEEE
Q 039662 324 -------------------DKRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 324 -------------------~~~~~~yd~~~~~~~~i~ 341 (366)
...+..||+++++|+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 251 SLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred hhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 146999999999999876
No 16
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.59 E-value=5.1e-06 Score=81.81 Aligned_cols=193 Identities=13% Similarity=0.131 Sum_probs=125.6
Q ss_pred eEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCceeecC
Q 039662 117 LINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDLE 196 (366)
Q Consensus 117 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 196 (366)
.+..+||.+++|..+.+.+..+. ..+.+.-.. +|..++. +.++......++.|++.++.|..++
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~--------~~~~~~~~~----~lYv~GG----~~~~~~~l~~ve~YD~~~~~W~~~a 365 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRC--------RVGVAVLNG----KLYVVGG----YDSGSDRLSSVERYDPRTNQWTPVA 365 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccc--------cccEEEECC----EEEEEcc----ccCCCcccceEEEecCCCCceeccC
Confidence 37789999999999988885421 233333221 6776665 1112334568999999999999986
Q ss_pred CCccccceeecccceEEECceEEEEEecCC--CceEEEEEeCCCceeeEeC-CCCCCCCCCccccccccceeeEecCeEE
Q 039662 197 GFEMRYDYMVDRIFNVYLNGFCYWVVCRPD--YSKAILSFSMSDEVFEEME-GPSVPQSTTYYQSVKTPWMLGTYDDCLS 273 (366)
Q Consensus 197 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~~~~~~i~-~P~~~~~~~~~~~l~~~~~~~~~~G~L~ 273 (366)
.+..+. .....+.++|.+|-+++... .-..+-.||..+++|..+. ++... . .... ++.+|+|+
T Consensus 366 ~M~~~R----~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r-~---~~gv------~~~~g~iY 431 (571)
T KOG4441|consen 366 PMNTKR----SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR-S---GHGV------AVLGGKLY 431 (571)
T ss_pred CccCcc----ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce-e---eeEE------EEECCEEE
Confidence 333322 23566789999999986432 2446999999999998874 44422 1 2345 88899999
Q ss_pred EEEeCCCCC----EEEEEEeeCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEc------CCeEEEEECCCCeEEEEE
Q 039662 274 LLYSDSFAH----TFELWTMTGGNWTKHSTFGPFIETYQPIGFWRKGEFFLESS------DKRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 274 ~~~~~~~~~----~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~~~~~~~i~ 341 (366)
++....... .++..--....|+..-.+...... ..+++ -++.|+.+.+ -..+-.||+++++|..+.
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCccccccc-ceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 996532222 222211113789988877754322 22332 3577777654 233789999999999986
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.55 E-value=4e-05 Score=71.28 Aligned_cols=215 Identities=15% Similarity=0.141 Sum_probs=121.5
Q ss_pred eecceEEEeec--CCeEEEEe--CCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCC-CCC
Q 039662 104 PYDGIFCLLKS--HTLINLWN--VSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDS-FHD 178 (366)
Q Consensus 104 s~~GLl~~~~~--~~~~~V~N--P~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~-~~~ 178 (366)
..++-|.+..+ ...+++++ |.+++|..+|+.+... ... ......+. +|..+......-.+. ...
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~-----R~~-~~~~~~~~-----~iYv~GG~~~~~~~~~~~~ 83 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGP-----RNQ-AVAAAIDG-----KLYVFGGIGKANSEGSPQV 83 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCC-----ccc-ceEEEECC-----EEEEEeCCCCCCCCCccee
Confidence 44455544332 23477777 4788999999876311 111 11222221 666665410000000 011
Q ss_pred cceEEEEEcCCCceeecCCCccccceeecccceE-EECceEEEEEecCCC------------------------------
Q 039662 179 FSHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNV-YLNGFCYWVVCRPDY------------------------------ 227 (366)
Q Consensus 179 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~------------------------------ 227 (366)
...++.|+..+++|+.++. +.+... ....++ .++|.+|-++.....
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~-~~p~~~--~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDT-RSPVGL--LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQP 160 (346)
T ss_pred cccEEEEECCCCEEecCCC-CCCCcc--cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCC
Confidence 3478999999999999841 222111 112233 579999999753210
Q ss_pred ------ceEEEEEeCCCceeeEeC-CCCCCCCCCccccccccceeeEecCeEEEEEeC--CCCCEEEEEEee---C-Cee
Q 039662 228 ------SKAILSFSMSDEVFEEME-GPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSD--SFAHTFELWTMT---G-GNW 294 (366)
Q Consensus 228 ------~~~Il~fD~~~~~~~~i~-~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~--~~~~~~~IW~l~---~-~~W 294 (366)
...+.+||+.+++|+.+. +|..... ...+ +..+|+|+++... ......++|..+ + ..|
T Consensus 161 ~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~---~~~~------~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 161 PEDYFWNKNVLSYDPSTNQWRNLGENPFLGTA---GSAI------VHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred hhHcCccceEEEEECCCCceeECccCCCCcCC---CceE------EEECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 146999999999999873 4432211 2344 7789999999532 122345677665 3 689
Q ss_pred eEEEEecCCC-----cceeeEEEeeCCeEEEEEcC-----------------------CeEEEEECCCCeEEEEE
Q 039662 295 TKHSTFGPFI-----ETYQPIGFWRKGEFFLESSD-----------------------KRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 295 ~~~~~i~~~~-----~~~~~~~~~~~g~i~~~~~~-----------------------~~~~~yd~~~~~~~~i~ 341 (366)
++.-.++... .......+.-+|+|+++... ..+-.||+++++|+.+.
T Consensus 232 ~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 232 NKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred eecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 9877664321 11111122346778776431 14568999999998765
No 18
>PLN02193 nitrile-specifier protein
Probab=98.50 E-value=6.1e-05 Score=72.90 Aligned_cols=174 Identities=13% Similarity=0.150 Sum_probs=100.5
Q ss_pred eEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCC--ceEEEEEeCCCceeeEeCCCCCCCCCCcccc
Q 039662 181 HVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDY--SKAILSFSMSDEVFEEMEGPSVPQSTTYYQS 258 (366)
Q Consensus 181 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~ 258 (366)
.+++|+.+++.|+.+......+.........+.+++.+|.+...... ...+.+||+.+.+|+.+..............
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 58899999999998742111111111224567889999998753211 2458899999999998742211111111234
Q ss_pred ccccceeeEecCeEEEEEeCC-CCCEEEEEEee--CCeeeEEEEecCC-C-cceeeEEEeeCCeEEEEEc-----CCeEE
Q 039662 259 VKTPWMLGTYDDCLSLLYSDS-FAHTFELWTMT--GGNWTKHSTFGPF-I-ETYQPIGFWRKGEFFLESS-----DKRVV 328 (366)
Q Consensus 259 l~~~~~~~~~~G~L~~~~~~~-~~~~~~IW~l~--~~~W~~~~~i~~~-~-~~~~~~~~~~~g~i~~~~~-----~~~~~ 328 (366)
+ +..+++|+++.... ....-++|..+ ..+|+........ . ...+.+.+ -+++|++... -..+.
T Consensus 274 ~------~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~ 346 (470)
T PLN02193 274 M------AADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVH 346 (470)
T ss_pred E------EEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceE
Confidence 4 67799999884322 22233567777 4889875432111 1 11122222 3566766543 25699
Q ss_pred EEECCCCeEEEEEEeCc----E--EEEEEeeecccccCC
Q 039662 329 LYDSTYQEMRDIRITGL----W--FTVHVLKESLIRLKE 361 (366)
Q Consensus 329 ~yd~~~~~~~~i~~~~~----~--~~~~~y~~slv~~~~ 361 (366)
.||+++++|+.+...+. . ..+..+...|.-+.+
T Consensus 347 ~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 347 YYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred EEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 99999999999864321 1 334455555554444
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.48 E-value=7.7e-05 Score=70.14 Aligned_cols=212 Identities=16% Similarity=0.104 Sum_probs=120.9
Q ss_pred eeecceEEEeec--CCeEEEEeCC--CcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCC-CC-
Q 039662 103 GPYDGIFCLLKS--HTLINLWNVS--LNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRD-SF- 176 (366)
Q Consensus 103 ~s~~GLl~~~~~--~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~-~~- 176 (366)
+..++-|.+..+ ...++++++. +++|..+|+.+.... ... .....+ + +|..+.. +.. ..
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r----~~~--~~v~~~---~--~IYV~GG----~~~~~~~ 99 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPR----EQA--VAAFID---G--KLYVFGG----IGKTNSE 99 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCc----ccc--eEEEEC---C--EEEEEcC----CCCCCCC
Confidence 455666654332 2347777764 578999987653110 111 112222 1 4555544 111 00
Q ss_pred ---CCcceEEEEEcCCCceeecCCCccccceeecccceEE-ECceEEEEEecCCC-------------------------
Q 039662 177 ---HDFSHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVY-LNGFCYWVVCRPDY------------------------- 227 (366)
Q Consensus 177 ---~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~------------------------- 227 (366)
.....++.|+..++.|+.++. ..+.. .....++. .+|.+|.++.....
T Consensus 100 ~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~-~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~ 176 (376)
T PRK14131 100 GSPQVFDDVYKYDPKTNSWQKLDT--RSPVG-LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDA 176 (376)
T ss_pred CceeEcccEEEEeCCCCEEEeCCC--CCCCc-ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHH
Confidence 112478999999999999842 11111 11123344 79999999753210
Q ss_pred -----------ceEEEEEeCCCceeeEeC-CCCCCCCCCccccccccceeeEecCeEEEEEe--CCCCCEEEEEEee---
Q 039662 228 -----------SKAILSFSMSDEVFEEME-GPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYS--DSFAHTFELWTMT--- 290 (366)
Q Consensus 228 -----------~~~Il~fD~~~~~~~~i~-~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~--~~~~~~~~IW~l~--- 290 (366)
...+..||+.+++|+.+. +|..... ...+ +..+++|+++.. .......++|..+
T Consensus 177 ~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~---~~a~------v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~ 247 (376)
T PRK14131 177 YFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTA---GSAV------VIKGNKLWLINGEIKPGLRTDAVKQGKFTG 247 (376)
T ss_pred HhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCC---cceE------EEECCEEEEEeeeECCCcCChhheEEEecC
Confidence 146999999999999874 4432211 1234 777999999953 1223556777665
Q ss_pred C-CeeeEEEEecCCC------cceeeEEEeeCCeEEEEEcC-----------------------CeEEEEECCCCeEEEE
Q 039662 291 G-GNWTKHSTFGPFI------ETYQPIGFWRKGEFFLESSD-----------------------KRVVLYDSTYQEMRDI 340 (366)
Q Consensus 291 ~-~~W~~~~~i~~~~------~~~~~~~~~~~g~i~~~~~~-----------------------~~~~~yd~~~~~~~~i 340 (366)
+ ..|+++..++... .........-+++|++.... ..+-.||+++++|+.+
T Consensus 248 ~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 327 (376)
T PRK14131 248 NNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV 327 (376)
T ss_pred CCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc
Confidence 3 7899888775321 11111122345677766431 0234799999999876
Q ss_pred E
Q 039662 341 R 341 (366)
Q Consensus 341 ~ 341 (366)
.
T Consensus 328 ~ 328 (376)
T PRK14131 328 G 328 (376)
T ss_pred C
Confidence 5
No 20
>PHA03098 kelch-like protein; Provisional
Probab=98.45 E-value=2.4e-05 Score=77.22 Aligned_cols=191 Identities=12% Similarity=0.079 Sum_probs=115.5
Q ss_pred EEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCceeecCC
Q 039662 118 INLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDLEG 197 (366)
Q Consensus 118 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~ 197 (366)
+.-.|+.+++|..+++.+.. ... .+...+ -+++.++. ..........+..|+..++.|..++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~-----~~lyv~GG----~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHYV------YCF--GSVVLN-----NVIYFIGG----MNKNNLSVNSVVSYDTKTKSWNKVPE 328 (534)
T ss_pred eeecchhhhhcccccCcccc------ccc--eEEEEC-----CEEEEECC----CcCCCCeeccEEEEeCCCCeeeECCC
Confidence 44578889999888755431 111 122222 14555544 11111122367899999999998864
Q ss_pred CccccceeecccceEEECceEEEEEecCCC--ceEEEEEeCCCceeeEe-CCCCCCCCCCccccccccceeeEecCeEEE
Q 039662 198 FEMRYDYMVDRIFNVYLNGFCYWVVCRPDY--SKAILSFSMSDEVFEEM-EGPSVPQSTTYYQSVKTPWMLGTYDDCLSL 274 (366)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~Il~fD~~~~~~~~i-~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~ 274 (366)
++.+. .....+.++|.+|.+++...+ ...+..||+.+.+|+.+ ++|.... .... +..+|+|++
T Consensus 329 ~~~~R----~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~----~~~~------~~~~~~iYv 394 (534)
T PHA03098 329 LIYPR----KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY----NPCV------VNVNNLIYV 394 (534)
T ss_pred CCccc----ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc----cceE------EEECCEEEE
Confidence 33222 234667889999999864321 34588999999999876 3443321 2334 778999999
Q ss_pred EEeCC--CCCEEEEEEee--CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEcC---------CeEEEEECCCCeEEEEE
Q 039662 275 LYSDS--FAHTFELWTMT--GGNWTKHSTFGPFIETYQPIGFWRKGEFFLESSD---------KRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 275 ~~~~~--~~~~~~IW~l~--~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~---------~~~~~yd~~~~~~~~i~ 341 (366)
+.... ....=.++..+ ..+|.+...++.. ......+..++.|++.... ..+..||+++++|+.+.
T Consensus 395 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 395 IGGISKNDELLKTVECFSLNTNKWSKGSPLPIS--HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred ECCcCCCCcccceEEEEeCCCCeeeecCCCCcc--ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 85421 11223566666 4889986554422 1112223346777766431 23899999999999875
No 21
>PLN02153 epithiospecifier protein
Probab=98.40 E-value=0.00014 Score=67.53 Aligned_cols=157 Identities=11% Similarity=0.122 Sum_probs=92.9
Q ss_pred ceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCC--ceEEEEEeCCCceeeEeC-CCCCC-CCCCc
Q 039662 180 SHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDY--SKAILSFSMSDEVFEEME-GPSVP-QSTTY 255 (366)
Q Consensus 180 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~Il~fD~~~~~~~~i~-~P~~~-~~~~~ 255 (366)
..+.+|+..++.|+.+......+.........+.++|.+|-++..... ...+.+||+.+.+|..++ ++... .....
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 368899999999998852211111111124567889999999753222 235889999999999874 21110 00111
Q ss_pred cccccccceeeEecCeEEEEEeCCCC-------CEEEEEEee--CCeeeEEEEecC--CCcceeeEEEeeCCeEEEEEc-
Q 039662 256 YQSVKTPWMLGTYDDCLSLLYSDSFA-------HTFELWTMT--GGNWTKHSTFGP--FIETYQPIGFWRKGEFFLESS- 323 (366)
Q Consensus 256 ~~~l~~~~~~~~~~G~L~~~~~~~~~-------~~~~IW~l~--~~~W~~~~~i~~--~~~~~~~~~~~~~g~i~~~~~- 323 (366)
.... +..+++|+++...... ..-++|+.+ ...|..+-.... .....+...+ -+++|+++..
T Consensus 130 ~~~~------~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~ 202 (341)
T PLN02153 130 FHSM------ASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGF 202 (341)
T ss_pred eeEE------EEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEecc
Confidence 2344 7789999888432111 112577777 488997654321 1111122222 3566665421
Q ss_pred -------------CCeEEEEECCCCeEEEEEEe
Q 039662 324 -------------DKRVVLYDSTYQEMRDIRIT 343 (366)
Q Consensus 324 -------------~~~~~~yd~~~~~~~~i~~~ 343 (366)
...+..||+++++|+++...
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 24689999999999998643
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.31 E-value=6.7e-05 Score=64.33 Aligned_cols=227 Identities=12% Similarity=0.099 Sum_probs=127.8
Q ss_pred eeecceEEEeecCCeEEEEeCCCcceeecCCCCCCCCCc------ccccceeeEEeecCCCCCeEEEEEEeeecccCCCC
Q 039662 103 GPYDGIFCLLKSHTLINLWNVSLNEYRVIPECRPRLPLY------TKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSF 176 (366)
Q Consensus 103 ~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~------~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 176 (366)
+.|.|-.-=....-.+.|+|-.+-+|.++||.-.+..-. -...+......|+. |+..-.. ..+.+
T Consensus 31 GYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d-----~~yvWGG----RND~e 101 (392)
T KOG4693|consen 31 GYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD-----KAYVWGG----RNDDE 101 (392)
T ss_pred CcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc-----eEEEEcC----ccCcc
Confidence 555554432222224899999999999999843221100 00111112222221 2221111 11334
Q ss_pred CCcceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCC----ceEEEEEeCCCceeeEeCCCCCCCC
Q 039662 177 HDFSHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDY----SKAILSFSMSDEVFEEMEGPSVPQS 252 (366)
Q Consensus 177 ~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~----~~~Il~fD~~~~~~~~i~~P~~~~~ 252 (366)
...-.+.-|+.+++.|++.+-....+. .....++++++..+|-++...++ ...+.+||+++++|+.+..-.....
T Consensus 102 gaCN~Ly~fDp~t~~W~~p~v~G~vPg-aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Ppr 180 (392)
T KOG4693|consen 102 GACNLLYEFDPETNVWKKPEVEGFVPG-ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPR 180 (392)
T ss_pred cccceeeeeccccccccccceeeecCC-ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCch
Confidence 455677889999999998741111111 12345677888899988753221 3358999999999999853222211
Q ss_pred CCccccccccceeeEecCeEEEEEeC----------CCCCEEEEEEee--CCeeeEEEEecCCC-cceeeEEEeeCCeEE
Q 039662 253 TTYYQSVKTPWMLGTYDDCLSLLYSD----------SFAHTFELWTMT--GGNWTKHSTFGPFI-ETYQPIGFWRKGEFF 319 (366)
Q Consensus 253 ~~~~~~l~~~~~~~~~~G~L~~~~~~----------~~~~~~~IW~l~--~~~W~~~~~i~~~~-~~~~~~~~~~~g~i~ 319 (366)
-..+..- .+++|..++.... .+.-.-+|-+|+ .+.|.+...-...+ +..+...+.-+|+++
T Consensus 181 wRDFH~a------~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y 254 (392)
T KOG4693|consen 181 WRDFHTA------SVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMY 254 (392)
T ss_pred hhhhhhh------hhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEE
Confidence 1123333 5667777777321 112233566676 38898864333222 222333344578887
Q ss_pred EEEc--------CCeEEEEECCCCeEEEEEEeCc
Q 039662 320 LESS--------DKRVVLYDSTYQEMRDIRITGL 345 (366)
Q Consensus 320 ~~~~--------~~~~~~yd~~~~~~~~i~~~~~ 345 (366)
+... -+.++.||++|..|..|...|.
T Consensus 255 ~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 255 MFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred EecccchhhhhhhcceeecccccchheeeeccCC
Confidence 7643 3579999999999999987664
No 23
>PHA02790 Kelch-like protein; Provisional
Probab=98.23 E-value=0.00012 Score=71.10 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=94.7
Q ss_pred cceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCceeeEe-CCCCCCCCCCccc
Q 039662 179 FSHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVFEEM-EGPSVPQSTTYYQ 257 (366)
Q Consensus 179 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~~~i-~~P~~~~~~~~~~ 257 (366)
...++.|+..++.|..++.++.+.. ....+.++|.+|-+++.. +...+-.||+.+++|..+ ++|.... ..
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r~----~~~~v~~~~~iYviGG~~-~~~sve~ydp~~n~W~~~~~l~~~r~----~~ 356 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPRL----YASGVPANNKLYVVGGLP-NPTSVERWFHGDAAWVNMPSLLKPRC----NP 356 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchhh----cceEEEECCEEEEECCcC-CCCceEEEECCCCeEEECCCCCCCCc----cc
Confidence 3468899999999999964433221 245678999999998532 234588999999999877 3443221 23
Q ss_pred cccccceeeEecCeEEEEEeCC-CCCEEEEEEeeCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEcCCeEEEEECCCCe
Q 039662 258 SVKTPWMLGTYDDCLSLLYSDS-FAHTFELWTMTGGNWTKHSTFGPFIETYQPIGFWRKGEFFLESSDKRVVLYDSTYQE 336 (366)
Q Consensus 258 ~l~~~~~~~~~~G~L~~~~~~~-~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~~~~ 336 (366)
.. ++++|+|+++.... ....++.+-.+...|+..-.++.. ......+.-+|.|++.. +..-.||+++++
T Consensus 357 ~~------~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~--r~~~~~~~~~~~IYv~G--G~~e~ydp~~~~ 426 (480)
T PHA02790 357 AV------ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP--HYKSCALVFGRRLFLVG--RNAEFYCESSNT 426 (480)
T ss_pred EE------EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc--cccceEEEECCEEEEEC--CceEEecCCCCc
Confidence 44 88899999995422 224455443224889885444422 11222233467888774 457789999999
Q ss_pred EEEEE
Q 039662 337 MRDIR 341 (366)
Q Consensus 337 ~~~i~ 341 (366)
|+.+.
T Consensus 427 W~~~~ 431 (480)
T PHA02790 427 WTLID 431 (480)
T ss_pred EeEcC
Confidence 99876
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.06 E-value=0.0018 Score=60.99 Aligned_cols=148 Identities=14% Similarity=0.188 Sum_probs=84.5
Q ss_pred ceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCC-----CceEEEEEeCCCceeeEe-CCCCCCCCC
Q 039662 180 SHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPD-----YSKAILSFSMSDEVFEEM-EGPSVPQST 253 (366)
Q Consensus 180 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-----~~~~Il~fD~~~~~~~~i-~~P~~~~~~ 253 (366)
..+++|+..++.|+.++.+ +... ......+.++|.+|.++.... .......||.++.+|+.+ ++|......
T Consensus 189 ~~v~~YD~~t~~W~~~~~~--p~~~-~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 265 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGES--PFLG-TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS 265 (376)
T ss_pred ceEEEEECCCCeeeECCcC--CCCC-CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC
Confidence 3689999999999998633 3211 122456778999999985311 123455678889999876 455432111
Q ss_pred --Cc--cccccccceeeEecCeEEEEEeCCCC--------------------CEEEEEEeeCCeeeEEEEecCCCcceee
Q 039662 254 --TY--YQSVKTPWMLGTYDDCLSLLYSDSFA--------------------HTFELWTMTGGNWTKHSTFGPFIETYQP 309 (366)
Q Consensus 254 --~~--~~~l~~~~~~~~~~G~L~~~~~~~~~--------------------~~~~IW~l~~~~W~~~~~i~~~~~~~~~ 309 (366)
.. .... +..+|+|+++...... ..++++-.+...|++.-.++.... ..
T Consensus 266 ~~~~~~~~~a------~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~-~~- 337 (376)
T PRK14131 266 SQEGVAGAFA------GYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA-YG- 337 (376)
T ss_pred cCCccceEec------eeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc-ce-
Confidence 00 0112 6789999988532110 012233333478987765543211 12
Q ss_pred EEEeeCCeEEEEEcC-------CeEEEEECCCCeEE
Q 039662 310 IGFWRKGEFFLESSD-------KRVVLYDSTYQEMR 338 (366)
Q Consensus 310 ~~~~~~g~i~~~~~~-------~~~~~yd~~~~~~~ 338 (366)
..+.-+++|++.... ..+..|+++++.+.
T Consensus 338 ~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 338 VSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred EEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 233346778776531 25777777776554
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.00 E-value=0.00032 Score=64.58 Aligned_cols=149 Identities=10% Similarity=0.087 Sum_probs=88.3
Q ss_pred eeecceEEEeec------CCeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCC
Q 039662 103 GPYDGIFCLLKS------HTLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSF 176 (366)
Q Consensus 103 ~s~~GLl~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 176 (366)
+..+|.|.+..+ ...+.++||.|.+|..+|+.+... .. ...+..++. ||..+.. . + .
T Consensus 120 ~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-----r~-~~~~~~~~~-----~iYv~GG----~-~-~ 182 (323)
T TIGR03548 120 CYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-----RV-QPVCVKLQN-----ELYVFGG----G-S-N 182 (323)
T ss_pred EEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-----CC-cceEEEECC-----EEEEEcC----C-C-C
Confidence 556776655443 135999999999999998655311 11 112222221 5665554 1 1 1
Q ss_pred CCcceEEEEEcCCCceeecCCCcccc-ceee-cccceEEECceEEEEEecCCC---------------------------
Q 039662 177 HDFSHVAVYKFSTNSWRDLEGFEMRY-DYMV-DRIFNVYLNGFCYWVVCRPDY--------------------------- 227 (366)
Q Consensus 177 ~~~~~~~vyss~~~~W~~~~~~~~~~-~~~~-~~~~~v~~~G~lywl~~~~~~--------------------------- 227 (366)
.....+++|+.++++|+.++.++... +... .....+..+|.+|.++.....
T Consensus 183 ~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (323)
T TIGR03548 183 IAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLK 262 (323)
T ss_pred ccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCC
Confidence 11235689999999999986332111 1111 112234557899988743210
Q ss_pred -------ceEEEEEeCCCceeeEeC-CCCCCCCCCccccccccceeeEecCeEEEEEe
Q 039662 228 -------SKAILSFSMSDEVFEEME-GPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYS 277 (366)
Q Consensus 228 -------~~~Il~fD~~~~~~~~i~-~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~ 277 (366)
...+.+||+.+++|+.+. +|..... ...+ +..+|+|+++..
T Consensus 263 ~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~---~~~~------~~~~~~iyv~GG 311 (323)
T TIGR03548 263 PPEWYNWNRKILIYNVRTGKWKSIGNSPFFARC---GAAL------LLTGNNIFSING 311 (323)
T ss_pred CccccCcCceEEEEECCCCeeeEcccccccccC---chhe------EEECCEEEEEec
Confidence 146999999999999885 4432211 2345 888999999854
No 26
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.79 E-value=0.0039 Score=57.96 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=76.0
Q ss_pred ceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCC---ceEEEEE--eCCCceeeEe-CCCCCCC--
Q 039662 180 SHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDY---SKAILSF--SMSDEVFEEM-EGPSVPQ-- 251 (366)
Q Consensus 180 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~---~~~Il~f--D~~~~~~~~i-~~P~~~~-- 251 (366)
-.+++|+..+++|+.++.++. .. ......+.++|.+|.+...... ...+..| |.++.+|+.+ ++|....
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~--~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~ 244 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPF--LG-TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSS 244 (346)
T ss_pred ceEEEEECCCCceeECccCCC--Cc-CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCc
Confidence 478999999999999963332 11 1224556789999999753211 1224444 5567799876 3443221
Q ss_pred -CCCccccccccceeeEecCeEEEEEeCCC--------------------CCEEEEEEeeCCeeeEEEEecCCCcceeeE
Q 039662 252 -STTYYQSVKTPWMLGTYDDCLSLLYSDSF--------------------AHTFELWTMTGGNWTKHSTFGPFIETYQPI 310 (366)
Q Consensus 252 -~~~~~~~l~~~~~~~~~~G~L~~~~~~~~--------------------~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~ 310 (366)
........ +.++|+|+++..... ...+++|-.+...|+....++... ....
T Consensus 245 ~~~~~~~~a------~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~--~~~~ 316 (346)
T TIGR03547 245 QEGLAGAFA------GISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL--AYGV 316 (346)
T ss_pred cccccEEee------eEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc--eeeE
Confidence 01011224 678999999853210 024566655557898887665421 1222
Q ss_pred EEeeCCeEEEEEc
Q 039662 311 GFWRKGEFFLESS 323 (366)
Q Consensus 311 ~~~~~g~i~~~~~ 323 (366)
.+.-++.|+++..
T Consensus 317 ~~~~~~~iyv~GG 329 (346)
T TIGR03547 317 SVSWNNGVLLIGG 329 (346)
T ss_pred EEEcCCEEEEEec
Confidence 2334677777653
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.63 E-value=0.0014 Score=56.39 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=86.2
Q ss_pred ceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCC-----------ceEEEEEeCCCceeeEeC-CC
Q 039662 180 SHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDY-----------SKAILSFSMSDEVFEEME-GP 247 (366)
Q Consensus 180 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-----------~~~Il~fD~~~~~~~~i~-~P 247 (366)
..+++++..|-.||.+.....|+.+ .....++.++|.+|-++...+. ...|++||++++.|..-+ -|
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~Pprw-RDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRW-RDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred ccceeEeccceeeeehhccCCCchh-hhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 3667788889999999755555554 2346677888999999864321 446999999999997652 12
Q ss_pred CCCCCCCccccccccceeeEecCeEEEEEeCCC---CCEEEEEEee--CCeeeEEEEecCCCc-ceeeEEEeeCCeEEEE
Q 039662 248 SVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSF---AHTFELWTMT--GGNWTKHSTFGPFIE-TYQPIGFWRKGEFFLE 321 (366)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~---~~~~~IW~l~--~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~ 321 (366)
... .+....+. .+++|++++...... ...-++|..+ ...|+++..-...+. ..+-.++--++++++.
T Consensus 236 ~~P-~GRRSHS~------fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LF 308 (392)
T KOG4693|consen 236 MKP-GGRRSHST------FVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLF 308 (392)
T ss_pred cCC-Ccccccce------EEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEe
Confidence 111 11112344 788999999854222 2234788888 378998776554332 2344444456777665
Q ss_pred E
Q 039662 322 S 322 (366)
Q Consensus 322 ~ 322 (366)
.
T Consensus 309 G 309 (392)
T KOG4693|consen 309 G 309 (392)
T ss_pred c
Confidence 3
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.54 E-value=0.0035 Score=57.27 Aligned_cols=204 Identities=11% Similarity=0.153 Sum_probs=112.7
Q ss_pred EEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCC----CCCcceEEEEEcCCCcee
Q 039662 118 INLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDS----FHDFSHVAVYKFSTNSWR 193 (366)
Q Consensus 118 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~----~~~~~~~~vyss~~~~W~ 193 (366)
+|++|--+.+|+.+-.+....| + ..+.....|+. ++.+... ++.+. ....-.+=+|+..++.|.
T Consensus 100 Ly~Yn~k~~eWkk~~spn~P~p----R--sshq~va~~s~----~l~~fGG--EfaSPnq~qF~HYkD~W~fd~~trkwe 167 (521)
T KOG1230|consen 100 LYSYNTKKNEWKKVVSPNAPPP----R--SSHQAVAVPSN----ILWLFGG--EFASPNQEQFHHYKDLWLFDLKTRKWE 167 (521)
T ss_pred eeEEeccccceeEeccCCCcCC----C--ccceeEEeccC----eEEEecc--ccCCcchhhhhhhhheeeeeeccchhe
Confidence 8999999999998733222111 1 11333334433 2333220 02111 122234557889999999
Q ss_pred ecCC--CccccceeecccceEEECceEEEEE-ecCCC-----ceEEEEEeCCCceeeEeCCCCCCCCCCcccccccccee
Q 039662 194 DLEG--FEMRYDYMVDRIFNVYLNGFCYWVV-CRPDY-----SKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWML 265 (366)
Q Consensus 194 ~~~~--~~~~~~~~~~~~~~v~~~G~lywl~-~~~~~-----~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~ 265 (366)
.++. .|.+.. ....|.....|.-++ .+... -.-+.+||+++=+|+.+..+.........+++
T Consensus 168 ql~~~g~PS~RS----GHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~------ 237 (521)
T KOG1230|consen 168 QLEFGGGPSPRS----GHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQF------ 237 (521)
T ss_pred eeccCCCCCCCc----cceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceE------
Confidence 9952 222221 223333333322222 11111 22499999999999999765432221222344
Q ss_pred eEe-cCeEEEEEe----------CCCCCEEEEEEee---C----CeeeEEEEecCC--CcceeeEEEeeCCeE-EEEE--
Q 039662 266 GTY-DDCLSLLYS----------DSFAHTFELWTMT---G----GNWTKHSTFGPF--IETYQPIGFWRKGEF-FLES-- 322 (366)
Q Consensus 266 ~~~-~G~L~~~~~----------~~~~~~~~IW~l~---~----~~W~~~~~i~~~--~~~~~~~~~~~~g~i-~~~~-- 322 (366)
.+. .|.+.|... +.....-++|.|+ | ..|.++-.+... +...--+++++++.- +|-.
T Consensus 238 ~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~ 317 (521)
T KOG1230|consen 238 SVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC 317 (521)
T ss_pred EecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee
Confidence 555 888877722 2244566999998 2 578888777643 233445667777553 3321
Q ss_pred c------------CCeEEEEECCCCeEEEEEEe
Q 039662 323 S------------DKRVVLYDSTYQEMRDIRIT 343 (366)
Q Consensus 323 ~------------~~~~~~yd~~~~~~~~i~~~ 343 (366)
+ -+.++.||+..++|..-.++
T Consensus 318 D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 318 DLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred cccccchhhhhhhhhhhhheecccchhhHhhhc
Confidence 1 25699999999998776554
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=7.3e-05 Score=65.52 Aligned_cols=40 Identities=30% Similarity=0.561 Sum_probs=36.5
Q ss_pred ccCCcHHHHHHHHhcCChhhhhhheechhhhhhhcCChHH
Q 039662 3 VKYLSDDMMIETLSRLPVKSLMRFQCVCKSWYDLVKDPNF 42 (366)
Q Consensus 3 ~~~LP~Dll~eIL~rLP~~sl~r~~~VcK~W~~li~~~~F 42 (366)
...|||||++.||+.||.|+|+++..|||+|+++.++..-
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 4689999999999999999999999999999999877554
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.31 E-value=0.036 Score=53.87 Aligned_cols=206 Identities=10% Similarity=0.039 Sum_probs=118.9
Q ss_pred EEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCceeecCC
Q 039662 118 INLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDLEG 197 (366)
Q Consensus 118 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~~ 197 (366)
++|+|--++.|............ . .....++++ + +++.++.. . ........+..|+..|+.|+....
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~-r-~g~~~~~~~------~-~l~lfGG~-~---~~~~~~~~l~~~d~~t~~W~~l~~ 156 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSP-R-YGHSLSAVG------D-KLYLFGGT-D---KKYRNLNELHSLDLSTRTWSLLSP 156 (482)
T ss_pred eEEeecCCcccccccccCCCCCc-c-cceeEEEEC------C-eEEEEccc-c---CCCCChhheEeccCCCCcEEEecC
Confidence 99999999888876644332211 0 111112222 1 44444331 0 112234588999999999998863
Q ss_pred CccccceeecccceEEECceEEEEEecCC---CceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceeeEecCeEEE
Q 039662 198 FEMRYDYMVDRIFNVYLNGFCYWVVCRPD---YSKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLGTYDDCLSL 274 (366)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~ 274 (366)
...++.. ......+..+-.+|.++.... .-..+.+||+++.+|..+..............+ +..++++++
T Consensus 157 ~~~~P~~-r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~------~~~~~~~~v 229 (482)
T KOG0379|consen 157 TGDPPPP-RAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAM------VVVGNKLLV 229 (482)
T ss_pred cCCCCCC-cccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceE------EEECCeEEE
Confidence 3221211 123455566667777763211 245699999999999998665544333333455 788999999
Q ss_pred EEeCC--CCCEEEEEEee--CCeeeEEEEecC--CCcceeeEEEeeCCeEEEEEc--------CCeEEEEECCCCeEEEE
Q 039662 275 LYSDS--FAHTFELWTMT--GGNWTKHSTFGP--FIETYQPIGFWRKGEFFLESS--------DKRVVLYDSTYQEMRDI 340 (366)
Q Consensus 275 ~~~~~--~~~~~~IW~l~--~~~W~~~~~i~~--~~~~~~~~~~~~~g~i~~~~~--------~~~~~~yd~~~~~~~~i 340 (366)
+.... +.--=++|.|+ ...|.+.....- .....+... ..+..+++... -..++.||.+++.|.++
T Consensus 230 ~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 230 FGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV 308 (482)
T ss_pred EeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccccccccccccccccccceeee
Confidence 85422 22333999999 588885554432 122333333 23334444322 23578899999888887
Q ss_pred EEeC
Q 039662 341 RITG 344 (366)
Q Consensus 341 ~~~~ 344 (366)
...+
T Consensus 309 ~~~~ 312 (482)
T KOG0379|consen 309 ESVG 312 (482)
T ss_pred eccc
Confidence 6433
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.08 E-value=0.062 Score=52.25 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=96.2
Q ss_pred eEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCC-C--ceEEEEEeCCCceeeEeCCCCCCCCCCccc
Q 039662 181 HVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPD-Y--SKAILSFSMSDEVFEEMEGPSVPQSTTYYQ 257 (366)
Q Consensus 181 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~--~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~ 257 (366)
.+.+++.++..|.........+ ........+.++..+|.++.... . ...|.+||+.+.+|..+..-..........
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~H 167 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGH 167 (482)
T ss_pred eeEEeecCCcccccccccCCCC-CcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccc
Confidence 5778888888887764211111 11234567788899999875432 1 336999999999998874322211111123
Q ss_pred cccccceeeEecCeEEEEEeCC--CCCEEEEEEee-C-CeeeEEEEecCCC-c-ceeeEEEeeCCeEEEEEc-C------
Q 039662 258 SVKTPWMLGTYDDCLSLLYSDS--FAHTFELWTMT-G-GNWTKHSTFGPFI-E-TYQPIGFWRKGEFFLESS-D------ 324 (366)
Q Consensus 258 ~l~~~~~~~~~~G~L~~~~~~~--~~~~~~IW~l~-~-~~W~~~~~i~~~~-~-~~~~~~~~~~g~i~~~~~-~------ 324 (366)
.+ +..+.+|.+..... ....-++|+++ . ..|.++.+....+ . ..+...+. ++.++++.. .
T Consensus 168 s~------~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l 240 (482)
T KOG0379|consen 168 SA------TVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYL 240 (482)
T ss_pred eE------EEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCcee
Confidence 44 66677777774322 22577999999 4 7799999888543 2 33444444 344443322 1
Q ss_pred CeEEEEECCCCeEEEEEEeC
Q 039662 325 KRVVLYDSTYQEMRDIRITG 344 (366)
Q Consensus 325 ~~~~~yd~~~~~~~~i~~~~ 344 (366)
..+..+|+.+.+|+.+...+
T Consensus 241 ~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 241 NDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred cceEeeecccceeeeccccC
Confidence 35889999998888665444
No 32
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.82 E-value=0.00062 Score=59.99 Aligned_cols=45 Identities=20% Similarity=0.528 Sum_probs=39.7
Q ss_pred ccCCcHHHHHHHHhcC-----ChhhhhhheechhhhhhhcCChHHHHHHH
Q 039662 3 VKYLSDDMMIETLSRL-----PVKSLMRFQCVCKSWYDLVKDPNFIYKHL 47 (366)
Q Consensus 3 ~~~LP~Dll~eIL~rL-----P~~sl~r~~~VcK~W~~li~~~~F~~~~~ 47 (366)
++.||||+|.+||.++ ...+|.++.+|||.|+-...+|+|-+...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 4789999999999885 35899999999999999999999877643
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.30 E-value=0.0028 Score=56.45 Aligned_cols=43 Identities=30% Similarity=0.394 Sum_probs=39.3
Q ss_pred cCCc----HHHHHHHHhcCChhhhhhheechhhhhhhcCChHHHHHH
Q 039662 4 KYLS----DDMMIETLSRLPVKSLMRFQCVCKSWYDLVKDPNFIYKH 46 (366)
Q Consensus 4 ~~LP----~Dll~eIL~rLP~~sl~r~~~VcK~W~~li~~~~F~~~~ 46 (366)
..|| +++.+.||+.|...+|..|..|||+|+++++++...++.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 5789 999999999999999999999999999999998766554
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.68 E-value=0.28 Score=45.37 Aligned_cols=146 Identities=12% Similarity=0.135 Sum_probs=84.4
Q ss_pred eEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCC----C----ceEEEEEeCCCceeeEeCCCCCCCC
Q 039662 181 HVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPD----Y----SKAILSFSMSDEVFEEMEGPSVPQS 252 (366)
Q Consensus 181 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----~----~~~Il~fD~~~~~~~~i~~P~~~~~ 252 (366)
.+.+|+.+++.|+.+. .|.++.........|+-.|.+|.++..-. . ..-+-.||+.+.+|..+.++.....
T Consensus 99 dLy~Yn~k~~eWkk~~-spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeEEeccccceeEec-cCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 5678899999999983 22222221222233344465555543111 1 1238899999999999998875532
Q ss_pred CCccccccccceeeEecCeEEEEEe--CCCCCEE---EEEEee-C-CeeeEEEEec--CCCcceeeEEEeeCCeEEEEEc
Q 039662 253 TTYYQSVKTPWMLGTYDDCLSLLYS--DSFAHTF---ELWTMT-G-GNWTKHSTFG--PFIETYQPIGFWRKGEFFLESS 323 (366)
Q Consensus 253 ~~~~~~l~~~~~~~~~~G~L~~~~~--~~~~~~~---~IW~l~-~-~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~ 323 (366)
....++ +..+.+|.+... +.....+ ++|+.+ + ..|++...=. |...-..-+.+...|.|++...
T Consensus 178 -RSGHRM------vawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 178 -RSGHRM------VAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred -Ccccee------EEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 223566 888999988832 2211111 788888 5 8999988622 2111122233344566655421
Q ss_pred ---------------CCeEEEEECCC
Q 039662 324 ---------------DKRVVLYDSTY 334 (366)
Q Consensus 324 ---------------~~~~~~yd~~~ 334 (366)
-..++..++++
T Consensus 251 YsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 251 YSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred hhHhhhhhhhhcCceeeeeeeecCCc
Confidence 12467788877
No 35
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.67 E-value=1.2 Score=39.23 Aligned_cols=123 Identities=14% Similarity=0.184 Sum_probs=75.8
Q ss_pred ecccceEEECceEEEEEecCCCceEEEEEeCCCceee-EeCCCCCCCCC--------CccccccccceeeEecCeEEEEE
Q 039662 206 VDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVFE-EMEGPSVPQST--------TYYQSVKTPWMLGTYDDCLSLLY 276 (366)
Q Consensus 206 ~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~~-~i~~P~~~~~~--------~~~~~l~~~~~~~~~~G~L~~~~ 276 (366)
+.....|..||++|+-.. +...|+.||+.+++.. ...+|...... .....+ ++-+.-|.+++
T Consensus 69 ~~GtG~vVYngslYY~~~---~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~------AvDE~GLWvIY 139 (250)
T PF02191_consen 69 WQGTGHVVYNGSLYYNKY---NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDF------AVDENGLWVIY 139 (250)
T ss_pred eccCCeEEECCcEEEEec---CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEE------EEcCCCEEEEE
Confidence 445667888999999963 3557999999999998 77888765321 113444 66677788886
Q ss_pred eCCCCC-EEEEEEee-C-----CeeeEEEEecCCCcceeeEEEeeCCeEEEEEc-----CCeEEEEECCCCeEEEEEE
Q 039662 277 SDSFAH-TFELWTMT-G-----GNWTKHSTFGPFIETYQPIGFWRKGEFFLESS-----DKRVVLYDSTYQEMRDIRI 342 (366)
Q Consensus 277 ~~~~~~-~~~IW~l~-~-----~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-----~~~~~~yd~~~~~~~~i~~ 342 (366)
...+.. .+-|=.|+ + +.|.-.+ .. ..... +|--+|.++.+.. ..--+.||+.+++-+.+.+
T Consensus 140 at~~~~g~ivvskld~~tL~v~~tw~T~~--~k-~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 140 ATEDNNGNIVVSKLDPETLSVEQTWNTSY--PK-RSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred ecCCCCCcEEEEeeCcccCceEEEEEecc--Cc-hhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 644333 57777776 1 4565322 11 11111 1112455655543 1235789988887776654
No 36
>PF13964 Kelch_6: Kelch motif
Probab=93.05 E-value=0.25 Score=31.35 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=29.7
Q ss_pred cceEEECceEEEEEecCC---CceEEEEEeCCCceeeEeC
Q 039662 209 IFNVYLNGFCYWVVCRPD---YSKAILSFSMSDEVFEEME 245 (366)
Q Consensus 209 ~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~~~~~~i~ 245 (366)
...|.++|.+|.++.... ....+..||+++++|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 456889999999986433 1467999999999999873
No 37
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.97 E-value=5.8 Score=35.08 Aligned_cols=221 Identities=12% Similarity=0.102 Sum_probs=116.4
Q ss_pred eEE-eeecceEEEeec-CCeEEEEeCCCcceeecCCCCCCCCCccccc---------ceeeEEeecCCCCCeEEEEEEee
Q 039662 100 IHI-GPYDGIFCLLKS-HTLINLWNVSLNEYRVIPECRPRLPLYTKTH---------YANVALGLDPVTKDFKLVLILTL 168 (366)
Q Consensus 100 ~~i-~s~~GLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~---------~~~~~~g~d~~~~~ykvv~~~~~ 168 (366)
+.+ -+-+|-|-+... .+.+-=.||.|++....|-..-..|++.... -.....-+|+.+.+++=+-+--
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~- 143 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL- 143 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc-
Confidence 345 556676665553 3446668999999999887765554432100 0001112344333333222211
Q ss_pred ecccCCCCCCcceEEEEEcCCCceeecC-----CCccccce-------eecccceEEE--CceEEEEEecCCCceEEEEE
Q 039662 169 WNDHRDSFHDFSHVAVYKFSTNSWRDLE-----GFEMRYDY-------MVDRIFNVYL--NGFCYWVVCRPDYSKAILSF 234 (366)
Q Consensus 169 ~~~~~~~~~~~~~~~vyss~~~~W~~~~-----~~~~~~~~-------~~~~~~~v~~--~G~lywl~~~~~~~~~Il~f 234 (366)
+.....+.-.||+-..+-|-+-. .++..... .-...+++++ ||.+|+... ...+|...
T Consensus 144 -----~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasl---agnaiari 215 (353)
T COG4257 144 -----EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASL---AGNAIARI 215 (353)
T ss_pred -----ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEec---cccceEEc
Confidence 22234567788999988995432 11111110 0122345555 799988742 24579999
Q ss_pred eCCCceeeEeCCCCCCCCCCc---cccccccceeeEecCeEEEEEeCCCCCEEEEEEeeCCeeeEEEEecCCCcceeeEE
Q 039662 235 SMSDEVFEEMEGPSVPQSTTY---YQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMTGGNWTKHSTFGPFIETYQPIG 311 (366)
Q Consensus 235 D~~~~~~~~i~~P~~~~~~~~---~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~ 311 (366)
|..+..-++++.|........ .....+-|....-.|+|..+.- . ..+|.. +.++-.......+.
T Consensus 216 dp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdP--s----------~~sW~e-ypLPgs~arpys~r 282 (353)
T COG4257 216 DPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDP--S----------VTSWIE-YPLPGSKARPYSMR 282 (353)
T ss_pred ccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCc--c----------ccccee-eeCCCCCCCcceee
Confidence 999998888998887422111 0111222222222333333221 0 144543 33332222122344
Q ss_pred EeeCCeEEEEE-cCCeEEEEECCCCeEEEEEE
Q 039662 312 FWRKGEFFLES-SDKRVVLYDSTYQEMRDIRI 342 (366)
Q Consensus 312 ~~~~g~i~~~~-~~~~~~~yd~~~~~~~~i~~ 342 (366)
+...|.+.+.. ..+.+..||++|.+++.+.+
T Consensus 283 VD~~grVW~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 283 VDRHGRVWLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred eccCCcEEeeccccCceeecCcccceEEEecC
Confidence 55556666643 36789999999999998775
No 38
>smart00284 OLF Olfactomedin-like domains.
Probab=92.41 E-value=5.3 Score=35.15 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=74.0
Q ss_pred ecccceEEECceEEEEEecCCCceEEEEEeCCCceeeE-eCCCCCC-CC-------CCccccccccceeeEecCeEEEEE
Q 039662 206 VDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVFEE-MEGPSVP-QS-------TTYYQSVKTPWMLGTYDDCLSLLY 276 (366)
Q Consensus 206 ~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~~~-i~~P~~~-~~-------~~~~~~l~~~~~~~~~~G~L~~~~ 276 (366)
+.....|+.||++|+... +...|+.||+.+++... -.+|... .. +.....| ++-+.-|.+++
T Consensus 74 ~~GtG~VVYngslYY~~~---~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDl------AvDE~GLWvIY 144 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKF---NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDL------AVDENGLWVIY 144 (255)
T ss_pred cccccEEEECceEEEEec---CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEE------EEcCCceEEEE
Confidence 455677899999999753 23569999999999864 4577532 11 1123455 77777888886
Q ss_pred eCC-CCCEEEEEEee------CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEc-----CCeEEEEECCCCeEEEEEE
Q 039662 277 SDS-FAHTFELWTMT------GGNWTKHSTFGPFIETYQPIGFWRKGEFFLESS-----DKRVVLYDSTYQEMRDIRI 342 (366)
Q Consensus 277 ~~~-~~~~~~IW~l~------~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-----~~~~~~yd~~~~~~~~i~~ 342 (366)
... ....|.|=.|+ ++.|.-.+.-. .... +|--+|.++.+.. ..-.+.||..|++-+.+.+
T Consensus 145 at~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~---sa~n--aFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 145 ATEQNAGKIVISKLNPATLTIENTWITTYNKR---SASN--AFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred eccCCCCCEEEEeeCcccceEEEEEEcCCCcc---cccc--cEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 543 34667777777 25565422111 1111 1112455655542 2346789998887666543
No 39
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.92 E-value=8.5 Score=35.67 Aligned_cols=129 Identities=12% Similarity=0.038 Sum_probs=70.4
Q ss_pred ecceEEEeecCCeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCC--CcceE
Q 039662 105 YDGIFCLLKSHTLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFH--DFSHV 182 (366)
Q Consensus 105 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~--~~~~~ 182 (366)
.+.-|+..+...+.+|+++.|+....+|...... ... +.+.. .+ ++.++............ ..+++
T Consensus 75 ~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk-----~~p--isv~V---G~--~LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPK-----RCP--ISVSV---GD--KLYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred cCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCC-----cce--EEEEe---CC--eEEEeeccCccccccCccceeEEE
Confidence 3444555555556999999999999999865421 111 22222 12 35555431110000000 12333
Q ss_pred EEEE--------cCCCceeecCCCcccccee-e------cccceEEECceEEEEEecCCCceEEEEEeCCCceeeEe---
Q 039662 183 AVYK--------FSTNSWRDLEGFEMRYDYM-V------DRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVFEEM--- 244 (366)
Q Consensus 183 ~vys--------s~~~~W~~~~~~~~~~~~~-~------~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~~~i--- 244 (366)
-+|+ .++.+|+.+ |.|+... . ..+++|+ +|.--|+..... ...-.+||.++.+|+..
T Consensus 143 l~~~~~~~~~~~~~~w~W~~L---P~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~-~~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSL---PPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR-RWGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred eccccccccccCCCcceEEcC---CCCCccccCCcccceEEEEEEe-cCCeEEEEecCC-ceEEEEEEcCCcceeeccce
Confidence 3343 223467776 4333211 1 2356777 899888863221 13699999999999886
Q ss_pred CCCCCC
Q 039662 245 EGPSVP 250 (366)
Q Consensus 245 ~~P~~~ 250 (366)
.||...
T Consensus 218 ~LPF~G 223 (342)
T PF07893_consen 218 MLPFHG 223 (342)
T ss_pred ecCcCC
Confidence 688754
No 40
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.75 E-value=2.3 Score=37.47 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=69.4
Q ss_pred eEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCceeecC
Q 039662 117 LINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDLE 196 (366)
Q Consensus 117 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 196 (366)
.+...||.++.-..+|++.... ...-.+..|+... +++.+ . ..-.+.-|+..+.+|++-
T Consensus 211 aiaridp~~~~aev~p~P~~~~-------~gsRriwsdpig~----~witt----w-----g~g~l~rfdPs~~sW~ey- 269 (353)
T COG4257 211 AIARIDPFAGHAEVVPQPNALK-------AGSRRIWSDPIGR----AWITT----W-----GTGSLHRFDPSVTSWIEY- 269 (353)
T ss_pred ceEEcccccCCcceecCCCccc-------ccccccccCccCc----EEEec----c-----CCceeeEeCcccccceee-
Confidence 4777899999888888776521 1112345565433 44443 1 223778899999999987
Q ss_pred CCccccceeecccceEEECce-EEEEEecCCCceEEEEEeCCCceeeEeCCCCCC
Q 039662 197 GFEMRYDYMVDRIFNVYLNGF-CYWVVCRPDYSKAILSFSMSDEVFEEMEGPSVP 250 (366)
Q Consensus 197 ~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~Il~fD~~~~~~~~i~~P~~~ 250 (366)
+.|-.. .....++++.. .-|+. +-+...|..||.++++|.++++|..-
T Consensus 270 --pLPgs~--arpys~rVD~~grVW~s--ea~agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 270 --PLPGSK--ARPYSMRVDRHGRVWLS--EADAGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred --eCCCCC--CCcceeeeccCCcEEee--ccccCceeecCcccceEEEecCCCCC
Confidence 333221 22455555533 45775 44567899999999999999888753
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.64 E-value=15 Score=36.33 Aligned_cols=43 Identities=23% Similarity=0.567 Sum_probs=39.0
Q ss_pred ccCCcHHHHHHHHhcCChhhhhhheechhhhhhhcCChHHHHH
Q 039662 3 VKYLSDDMMIETLSRLPVKSLMRFQCVCKSWYDLVKDPNFIYK 45 (366)
Q Consensus 3 ~~~LP~Dll~eIL~rLP~~sl~r~~~VcK~W~~li~~~~F~~~ 45 (366)
++.||.++...||..|+.+++++++.||+.|+.+..+.....+
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 4679999999999999999999999999999999998777654
No 42
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.18 E-value=2.8 Score=40.11 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=48.4
Q ss_pred eEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCc--eee
Q 039662 117 LINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNS--WRD 194 (366)
Q Consensus 117 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~--W~~ 194 (366)
.+.|+|-+|++|. +|...-+.|. ...++||.+|.. |++++..+- +..++.=+.|.+...+ |++
T Consensus 58 ELHvYNTatnqWf-~PavrGDiPp----gcAA~GfvcdGt----rilvFGGMv------EYGkYsNdLYELQasRWeWkr 122 (830)
T KOG4152|consen 58 ELHVYNTATNQWF-APAVRGDIPP----GCAAFGFVCDGT----RILVFGGMV------EYGKYSNDLYELQASRWEWKR 122 (830)
T ss_pred hhhhhccccceee-cchhcCCCCC----chhhcceEecCc----eEEEEccEe------eeccccchHHHhhhhhhhHhh
Confidence 4999999999997 4544433332 233456666643 667665421 1123344677777655 555
Q ss_pred cCC-Cc--cccceeecccceEEECceEEEEEe
Q 039662 195 LEG-FE--MRYDYMVDRIFNVYLNGFCYWVVC 223 (366)
Q Consensus 195 ~~~-~~--~~~~~~~~~~~~v~~~G~lywl~~ 223 (366)
+.. .+ .++.+..-..+-+..+.+.|.++.
T Consensus 123 lkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGG 154 (830)
T KOG4152|consen 123 LKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGG 154 (830)
T ss_pred cCCCCCCCCCCCCCccCceeEEeccEeEEecc
Confidence 531 11 111111112233455677888763
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=91.12 E-value=0.74 Score=28.50 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=29.6
Q ss_pred cceEEECceEEEEEecCC---CceEEEEEeCCCceeeEe
Q 039662 209 IFNVYLNGFCYWVVCRPD---YSKAILSFSMSDEVFEEM 244 (366)
Q Consensus 209 ~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~~~~~~i 244 (366)
..++.++|.+|-++.... ....+..||+.+++|+.+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 467889999999996533 256799999999999877
No 44
>PF13964 Kelch_6: Kelch motif
Probab=90.28 E-value=0.63 Score=29.42 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.2
Q ss_pred CcceEEEEEcCCCceeecCCCc
Q 039662 178 DFSHVAVYKFSTNSWRDLEGFE 199 (366)
Q Consensus 178 ~~~~~~vyss~~~~W~~~~~~~ 199 (366)
....+++|+.++++|+.++.++
T Consensus 26 ~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 26 YSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred ccccEEEEcCCCCcEEECCCCC
Confidence 4568999999999999997444
No 45
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=90.14 E-value=2.1 Score=33.43 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=48.1
Q ss_pred EEEEEeCCCc--eeeEeCCCCCCCCC----------CccccccccceeeEecCeEEEEEeC--------CCCCEEEEEEe
Q 039662 230 AILSFSMSDE--VFEEMEGPSVPQST----------TYYQSVKTPWMLGTYDDCLSLLYSD--------SFAHTFELWTM 289 (366)
Q Consensus 230 ~Il~fD~~~~--~~~~i~~P~~~~~~----------~~~~~l~~~~~~~~~~G~L~~~~~~--------~~~~~~~IW~l 289 (366)
+|+.+|+-++ .++.|+||...... ..+..+ +..+|+|-++... .....+.+|.|
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v------~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl 80 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDV------GVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTL 80 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceE------EecCCCEEEEEEecccCCCcccCCcEEEEEEe
Confidence 4888998875 67888999865221 112345 7789999888431 24678999999
Q ss_pred e----C-CeeeEEEEecC
Q 039662 290 T----G-GNWTKHSTFGP 302 (366)
Q Consensus 290 ~----~-~~W~~~~~i~~ 302 (366)
+ + ..|.+-+++..
T Consensus 81 ~~~~~~~~~W~~d~~v~~ 98 (131)
T PF07762_consen 81 KDPEGSSWEWKKDCEVDL 98 (131)
T ss_pred ccCCCCCCCEEEeEEEEh
Confidence 8 1 78999998875
No 46
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.76 E-value=12 Score=32.07 Aligned_cols=191 Identities=10% Similarity=0.036 Sum_probs=94.4
Q ss_pred ecceEEEeecCCeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEE
Q 039662 105 YDGIFCLLKSHTLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAV 184 (366)
Q Consensus 105 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 184 (366)
.+|.+......+.++.+|+.|++...--..+... .. .-...+ =+|+.... + . .+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~------~~--~~~~~~-----~~v~v~~~------~---~--~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI------SG--APVVDG-----GRVYVGTS------D---G--SLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG------GS--GEEEET-----TEEEEEET------T---S--EEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc------cc--eeeecc-----cccccccc------e---e--eeEe
Confidence 7788887777777999999999877543332210 00 011111 13332221 1 1 5566
Q ss_pred EEcCCC--ceee-cCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCcee--eE-eCCCCCCCC----CC
Q 039662 185 YKFSTN--SWRD-LEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVF--EE-MEGPSVPQS----TT 254 (366)
Q Consensus 185 yss~~~--~W~~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~--~~-i~~P~~~~~----~~ 254 (366)
++..++ .|+. ....+ .............++.+|... . ...|.++|+++++- .. +..|..... ..
T Consensus 91 ~d~~tG~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~--~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 164 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSP--PAGVRSSSSPAVDGDRLYVGT--S--SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSD 164 (238)
T ss_dssp EETTTSCEEEEEEE-SSC--TCSTB--SEEEEETTEEEEEE--T--CSEEEEEETTTTEEEEEEESSTT-SS--EEEETT
T ss_pred cccCCcceeeeecccccc--ccccccccCceEecCEEEEEe--c--cCcEEEEecCCCcEEEEeecCCCCCCcceeeecc
Confidence 665555 6884 42111 111112223334466676664 2 34799999998754 22 233332110 00
Q ss_pred ccccccccceeeEecCeEEEEEeCCCCCEEEEEEee-C-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEcCCeEEEEEC
Q 039662 255 YYQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMT-G-GNWTKHSTFGPFIETYQPIGFWRKGEFFLESSDKRVVLYDS 332 (366)
Q Consensus 255 ~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~-~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~ 332 (366)
....+ ...+|.+++... ....+.+ -+. + ..|.+. +. .... .....++.+++...++.++.+|+
T Consensus 165 ~~~~~------~~~~~~v~~~~~--~g~~~~~-d~~tg~~~w~~~--~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 165 INGSP------VISDGRVYVSSG--DGRVVAV-DLATGEKLWSKP--IS---GIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp EEEEE------ECCTTEEEEECC--TSSEEEE-ETTTTEEEEEEC--SS----ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred cccce------EEECCEEEEEcC--CCeEEEE-ECCCCCEEEEec--CC---CccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 01222 334665555443 2233444 333 3 346222 22 1111 11233455666666899999999
Q ss_pred CCCeEEEE
Q 039662 333 TYQEMRDI 340 (366)
Q Consensus 333 ~~~~~~~i 340 (366)
+|++..+-
T Consensus 230 ~tG~~~W~ 237 (238)
T PF13360_consen 230 KTGKVVWQ 237 (238)
T ss_dssp TTTEEEEE
T ss_pred CCCCEEeE
Confidence 99988763
No 47
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.59 E-value=19 Score=34.14 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=63.7
Q ss_pred EECceEEEEEecCCCceEEEEEeCCCce---eeEeCCCCCCCCCCccccccccceeeEecCeEEEEEeCCCCCEEEEEEe
Q 039662 213 YLNGFCYWVVCRPDYSKAILSFSMSDEV---FEEMEGPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTM 289 (366)
Q Consensus 213 ~~~G~lywl~~~~~~~~~Il~fD~~~~~---~~~i~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l 289 (366)
+.++.+|.++........|++.|+.+.. |..+-+|..... ....+ ...++.|.+.........+.|+-+
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~--~l~~~------~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV--SLEDV------SLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE--EEEEE------EEETTEEEEEEEETTEEEEEEEET
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce--eEEEE------EEECCEEEEEEEECCccEEEEEEC
Confidence 4578888887533347789999999865 554333332210 12233 556888888876444444444444
Q ss_pred eCCeeeEEEEecCCCcceeeEEEe---eCCeEEEEEc----CCeEEEEECCCCeEEEEE
Q 039662 290 TGGNWTKHSTFGPFIETYQPIGFW---RKGEFFLESS----DKRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 290 ~~~~W~~~~~i~~~~~~~~~~~~~---~~g~i~~~~~----~~~~~~yd~~~~~~~~i~ 341 (366)
+ ..|.....-.+..+ ...++. ..+++++... ...++.||+++++.+.+.
T Consensus 357 ~-~~~~~~~~~~p~~g--~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 357 D-DGKESREIPLPEAG--SVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp T--TEEEEEEESSSSS--EEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred C-CCcEEeeecCCcce--EEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 3 22333332222212 222222 2345665543 568999999999998764
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=89.08 E-value=14 Score=31.86 Aligned_cols=118 Identities=12% Similarity=0.157 Sum_probs=66.0
Q ss_pred EECceEEEEEecCCCceEEEEEeCCCceeeEeCCCCCCCCCCc--cccccccceeeEe--cC--eEEEEEeC---CCCCE
Q 039662 213 YLNGFCYWVVCRPDYSKAILSFSMSDEVFEEMEGPSVPQSTTY--YQSVKTPWMLGTY--DD--CLSLLYSD---SFAHT 283 (366)
Q Consensus 213 ~~~G~lywl~~~~~~~~~Il~fD~~~~~~~~i~~P~~~~~~~~--~~~l~~~~~~~~~--~G--~L~~~~~~---~~~~~ 283 (366)
.|||.+ ++. .. ..++..|+.++++..++.|+....... ...+ +-. .+ |+..+... .....
T Consensus 3 sCnGLl-c~~--~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~------G~d~~~~~YKVv~~~~~~~~~~~~~ 71 (230)
T TIGR01640 3 PCDGLI-CFS--YG--KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFL------GYDPIEKQYKVLCFSDRSGNRNQSE 71 (230)
T ss_pred ccceEE-EEe--cC--CcEEEECCCCCCEEecCCCCCcccccccceEEE------eecccCCcEEEEEEEeecCCCCCcc
Confidence 478888 454 22 469999999999998876653211000 0111 111 12 23222221 12356
Q ss_pred EEEEEeeCCeeeEEEEecCCCcceeeEEEeeCCeEEEEEc-C-----CeEEEEECCCCeEEE-EEE
Q 039662 284 FELWTMTGGNWTKHSTFGPFIETYQPIGFWRKGEFFLESS-D-----KRVVLYDSTYQEMRD-IRI 342 (366)
Q Consensus 284 ~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-~-----~~~~~yd~~~~~~~~-i~~ 342 (366)
++|..+...+|.............+. ++.-+|.++.... . ..++.||++++++.. ++.
T Consensus 72 ~~Vys~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~ 136 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPL 136 (230)
T ss_pred EEEEEeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeec
Confidence 77777775689987632221111122 3444777765532 1 169999999999994 664
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.64 E-value=0.24 Score=45.98 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=34.8
Q ss_pred cCCcHHHHHHHHhcCChhhhhhheechhhhhhhcCChH
Q 039662 4 KYLSDDMMIETLSRLPVKSLMRFQCVCKSWYDLVKDPN 41 (366)
Q Consensus 4 ~~LP~Dll~eIL~rLP~~sl~r~~~VcK~W~~li~~~~ 41 (366)
-.||.+++..||+-|..|++.|++.+||.|+-+..+..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 47999999999999999999999999999999887643
No 50
>smart00612 Kelch Kelch domain.
Probab=88.60 E-value=1.2 Score=27.27 Aligned_cols=19 Identities=37% Similarity=0.650 Sum_probs=16.0
Q ss_pred cceEEEEEcCCCceeecCC
Q 039662 179 FSHVAVYKFSTNSWRDLEG 197 (366)
Q Consensus 179 ~~~~~vyss~~~~W~~~~~ 197 (366)
...+++|+.+++.|+..+.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~ 32 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPS 32 (47)
T ss_pred eeeEEEECCCCCeEccCCC
Confidence 3478999999999999863
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.57 E-value=10 Score=33.24 Aligned_cols=169 Identities=20% Similarity=0.216 Sum_probs=94.4
Q ss_pred cceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCC--ceeeEeCCCCCCCCCCcc
Q 039662 179 FSHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSD--EVFEEMEGPSVPQSTTYY 256 (366)
Q Consensus 179 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~--~~~~~i~~P~~~~~~~~~ 256 (366)
.....+|+..++++|.+ +.....++. ...+.-||.+.-...+.++...+-.|+..+ ......+.|........+
T Consensus 45 ~a~s~~yD~~tn~~rpl---~v~td~FCS-gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPL---TVQTDTFCS-GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred eEEEEEEecCCCcEEec---cCCCCCccc-CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc
Confidence 44667899999999988 333333332 345566888876665555566788888765 112223444433333344
Q ss_pred ccccccceeeEe-cCeEEEEEeCCCCCEEEEEEee--C---CeeeEEEEec--CCCcceeeEEEeeCCeEEEEEcCCeEE
Q 039662 257 QSVKTPWMLGTY-DDCLSLLYSDSFAHTFELWTMT--G---GNWTKHSTFG--PFIETYQPIGFWRKGEFFLESSDKRVV 328 (366)
Q Consensus 257 ~~l~~~~~~~~~-~G~L~~~~~~~~~~~~~IW~l~--~---~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~~~~~~ 328 (366)
.+. ..+ +|++.++... .....+.|=-. + ..|....... .....+-.+.+-.+|+||+... .+-.
T Consensus 121 pT~------~~L~DG~vlIvGG~-~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an-~~s~ 192 (243)
T PF07250_consen 121 PTA------TTLPDGRVLIVGGS-NNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN-RGSI 192 (243)
T ss_pred ccc------eECCCCCEEEEeCc-CCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-CCcE
Confidence 554 444 7888877653 34556666432 1 2222111111 1123344455668899987764 5677
Q ss_pred EEECCCCeE-EEEE-EeCcEEEEEEeeecccccC
Q 039662 329 LYDSTYQEM-RDIR-ITGLWFTVHVLKESLIRLK 360 (366)
Q Consensus 329 ~yd~~~~~~-~~i~-~~~~~~~~~~y~~slv~~~ 360 (366)
.||.+++++ +.++ +.+. .+.++..-+-|-++
T Consensus 193 i~d~~~n~v~~~lP~lPg~-~R~YP~sgssvmLP 225 (243)
T PF07250_consen 193 IYDYKTNTVVRTLPDLPGG-PRNYPASGSSVMLP 225 (243)
T ss_pred EEeCCCCeEEeeCCCCCCC-ceecCCCcceEEec
Confidence 789999976 5544 3332 45555555544433
No 52
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.67 E-value=26 Score=32.36 Aligned_cols=171 Identities=13% Similarity=0.171 Sum_probs=87.5
Q ss_pred eeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCc--eeecCCCccccceeecccceEE-ECce-EEEEE
Q 039662 147 ANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNS--WRDLEGFEMRYDYMVDRIFNVY-LNGF-CYWVV 222 (366)
Q Consensus 147 ~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~--W~~~~~~~~~~~~~~~~~~~v~-~~G~-lywl~ 222 (366)
..+.+.++|..+ |-+|. . . ..-.+.+|+...+. ......+..+... .....++ -+|. +|...
T Consensus 145 h~H~v~~~pdg~-~v~v~--d----l-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~--GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 145 HPHQVVFSPDGR-FVYVP--D----L-----GADRVYVYDIDDDTGKLTPVDSIKVPPGS--GPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp CEEEEEE-TTSS-EEEEE--E----T-----TTTEEEEEEE-TTS-TEEEEEEEECSTTS--SEEEEEE-TTSSEEEEEE
T ss_pred cceeEEECCCCC-EEEEE--e----c-----CCCEEEEEEEeCCCceEEEeeccccccCC--CCcEEEEcCCcCEEEEec
Confidence 346677777643 33332 2 1 12278888887654 5442211111111 0111222 2555 55553
Q ss_pred ecCCCceEEEEEeCC--CceeeEe----CCCCCCCCCCccccccccceeeEecCe-EEEEEeCCCCCEEEEEEee--CCe
Q 039662 223 CRPDYSKAILSFSMS--DEVFEEM----EGPSVPQSTTYYQSVKTPWMLGTYDDC-LSLLYSDSFAHTFELWTMT--GGN 293 (366)
Q Consensus 223 ~~~~~~~~Il~fD~~--~~~~~~i----~~P~~~~~~~~~~~l~~~~~~~~~~G~-L~~~~~~~~~~~~~IW~l~--~~~ 293 (366)
+....|.+|++. +++++.+ .+|...........+ ...-+|+ |++... ..+.+.++.++ ++.
T Consensus 211 ---e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i-----~ispdg~~lyvsnr--~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 211 ---ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI-----AISPDGRFLYVSNR--GSNSISVFDLDPATGT 280 (345)
T ss_dssp ---TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE-----EE-TTSSEEEEEEC--TTTEEEEEEECTTTTT
T ss_pred ---CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE-----EEecCCCEEEEEec--cCCEEEEEEEecCCCc
Confidence 223456666666 6666554 244433221111222 1233676 454444 57899999996 344
Q ss_pred eeEEEEecCCCcceeeEEEeeCCeEEEEEc--CCeEEEE--ECCCCeEEEEE
Q 039662 294 WTKHSTFGPFIETYQPIGFWRKGEFFLESS--DKRVVLY--DSTYQEMRDIR 341 (366)
Q Consensus 294 W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~--~~~~~~y--d~~~~~~~~i~ 341 (366)
-..+..++......+-+.+..+|+.+++.. ++.+..| |.+++.++.+.
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 555555554333456677778888666543 5667666 56788998765
No 53
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=86.44 E-value=2.3 Score=26.66 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=29.3
Q ss_pred cceEEECceEEEEEec--CC---CceEEEEEeCCCceeeEeCC
Q 039662 209 IFNVYLNGFCYWVVCR--PD---YSKAILSFSMSDEVFEEMEG 246 (366)
Q Consensus 209 ~~~v~~~G~lywl~~~--~~---~~~~Il~fD~~~~~~~~i~~ 246 (366)
..++.++|.+|.++.. .. ....+-.||+++.+|+.++.
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 4567889999999865 11 15569999999999998754
No 54
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.60 E-value=23 Score=30.73 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=107.0
Q ss_pred eeecceEEEee-cCCeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcce
Q 039662 103 GPYDGIFCLLK-SHTLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSH 181 (366)
Q Consensus 103 ~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 181 (366)
...+|-|.+.+ ..+.++.++|.+++...+..+. ..++.++...+ +++.... . .
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g--~l~v~~~------~------~ 61 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDG--RLYVADS------G------G 61 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTS--EEEEEET------T------C
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC------------CceEEEEccCC--EEEEEEc------C------c
Confidence 44456666666 4567999999999887644333 15566663222 2222221 1 4
Q ss_pred EEEEEcCCCceeecCCCcccc-ceeecccceEEECceEEEEEecCC---Cc--eEEEEEeCCCceeeEe----CCCCCCC
Q 039662 182 VAVYKFSTNSWRDLEGFEMRY-DYMVDRIFNVYLNGFCYWVVCRPD---YS--KAILSFSMSDEVFEEM----EGPSVPQ 251 (366)
Q Consensus 182 ~~vyss~~~~W~~~~~~~~~~-~~~~~~~~~v~~~G~lywl~~~~~---~~--~~Il~fD~~~~~~~~i----~~P~~~~ 251 (366)
..+++..++.++.+...+... .......-.+--+|.+|.-..... .. ..|..+|.. ++...+ ..|..
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNG-- 138 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNG-- 138 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEE--
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccc--
Confidence 467788999988874221111 111111223344788777653221 12 679999999 554443 22221
Q ss_pred CCCccccccccceeeEecCe-EEEEEeCCCCCEEEEEEee---C-CeeeEEEEec-CCCc--ceeeEEEeeCCeEEEEEc
Q 039662 252 STTYYQSVKTPWMLGTYDDC-LSLLYSDSFAHTFELWTMT---G-GNWTKHSTFG-PFIE--TYQPIGFWRKGEFFLESS 323 (366)
Q Consensus 252 ~~~~~~~l~~~~~~~~~~G~-L~~~~~~~~~~~~~IW~l~---~-~~W~~~~~i~-~~~~--~~~~~~~~~~g~i~~~~~ 323 (366)
+ ...-+|+ |++... .... ||..+ + ..+.....+. .... ...-+++..+|.|++...
T Consensus 139 -------i-----~~s~dg~~lyv~ds--~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 139 -------I-----AFSPDGKTLYVADS--FNGR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp -------E-----EEETTSSEEEEEET--TTTE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred -------e-----EECCcchheeeccc--ccce--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence 1 1334565 444433 3334 66666 2 4465544442 2222 234456667788887754
Q ss_pred -CCeEEEEECCCCeEEEEEEe
Q 039662 324 -DKRVVLYDSTYQEMRDIRIT 343 (366)
Q Consensus 324 -~~~~~~yd~~~~~~~~i~~~ 343 (366)
.+++..||++.+.++.|.+.
T Consensus 203 ~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 203 GGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp TTTEEEEEETTSCEEEEEE-S
T ss_pred CCCEEEEECCCccEEEEEcCC
Confidence 78999999998888888876
No 55
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=85.55 E-value=24 Score=32.67 Aligned_cols=114 Identities=12% Similarity=0.222 Sum_probs=70.5
Q ss_pred CceEEEEEecCCCceEEEEEeCCCce--ee---EeCCCCCCCCCCccccccccceeeEecCeE-EEEEeCCCCCEEEEEE
Q 039662 215 NGFCYWVVCRPDYSKAILSFSMSDEV--FE---EMEGPSVPQSTTYYQSVKTPWMLGTYDDCL-SLLYSDSFAHTFELWT 288 (366)
Q Consensus 215 ~G~lywl~~~~~~~~~Il~fD~~~~~--~~---~i~~P~~~~~~~~~~~l~~~~~~~~~~G~L-~~~~~~~~~~~~~IW~ 288 (366)
+|..-|.. ..+...|..|+++.+. +. .+.+|...+ ...+ ...-+|+. ++++. ....+.++.
T Consensus 154 dg~~v~v~--dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G----PRh~-----~f~pdg~~~Yv~~e--~s~~v~v~~ 220 (345)
T PF10282_consen 154 DGRFVYVP--DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG----PRHL-----AFSPDGKYAYVVNE--LSNTVSVFD 220 (345)
T ss_dssp TSSEEEEE--ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS----EEEE-----EE-TTSSEEEEEET--TTTEEEEEE
T ss_pred CCCEEEEE--ecCCCEEEEEEEeCCCceEEEeeccccccCCC----CcEE-----EEcCCcCEEEEecC--CCCcEEEEe
Confidence 56666665 3345578888887765 43 356666542 1222 12336664 44443 678999998
Q ss_pred ee--CCeeeEEEEecCCC------cceeeEEEeeCCeEEEEEc--CCeEEEEEC--CCCeEEEEE
Q 039662 289 MT--GGNWTKHSTFGPFI------ETYQPIGFWRKGEFFLESS--DKRVVLYDS--TYQEMRDIR 341 (366)
Q Consensus 289 l~--~~~W~~~~~i~~~~------~~~~~~~~~~~g~i~~~~~--~~~~~~yd~--~~~~~~~i~ 341 (366)
++ +..++...++...+ ....-+.+..+|+.+++.. .+.+..|++ ++++++.+.
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 88 37888888887542 1345567778888666543 677888887 567887765
No 56
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=85.18 E-value=1.5 Score=27.05 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=22.9
Q ss_pred EEEEEEeeecccCCCCCCcceEEEEEcCCCceeecC
Q 039662 161 KLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDLE 196 (366)
Q Consensus 161 kvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 196 (366)
+|+.++. +.........+++|+..++.|+.++
T Consensus 13 ~iyv~GG----~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 13 KIYVIGG----YDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEEE----BESTSSBEEEEEEEETTTTEEEEEE
T ss_pred EEEEEee----ecccCceeeeEEEEeCCCCEEEEcC
Confidence 6666665 2122345569999999999999985
No 57
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=83.35 E-value=26 Score=32.53 Aligned_cols=54 Identities=11% Similarity=0.251 Sum_probs=36.2
Q ss_pred eEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCC-ceEEEEEeCCCc
Q 039662 181 HVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDY-SKAILSFSMSDE 239 (366)
Q Consensus 181 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~Il~fD~~~~ 239 (366)
....|+-++..|+.+++..+|+. ..+.++..-=-|++....+ ...|-+.|+.+.
T Consensus 200 GTysfDt~~~~W~~~GdW~LPF~-----G~a~y~~el~~W~Gls~~~~~~~lca~dv~~~ 254 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWMLPFH-----GQAEYVPELDLWFGLSSDGGGGHLCACDVSSA 254 (342)
T ss_pred EEEEEEcCCcceeeccceecCcC-----CccEECCCcCeEEEeccCCCCcEEEEEecccc
Confidence 34556667789999975545432 4666666666788765443 248999999884
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=79.70 E-value=38 Score=28.91 Aligned_cols=136 Identities=11% Similarity=0.024 Sum_probs=75.8
Q ss_pred eEEEEEcCCC--ceeecCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCcee-eEeCCCCCCCCCCccc
Q 039662 181 HVAVYKFSTN--SWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVF-EEMEGPSVPQSTTYYQ 257 (366)
Q Consensus 181 ~~~vyss~~~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~-~~i~~P~~~~~~~~~~ 257 (366)
.+..++..++ .|+.-- ...... .....+..+|.+|-.. ....|.++|..+++. -...++.... .
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~~~~~~--~~~~~~~~~~~v~~~~----~~~~l~~~d~~tG~~~W~~~~~~~~~-----~ 70 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--GPGIGG--PVATAVPDGGRVYVAS----GDGNLYALDAKTGKVLWRFDLPGPIS-----G 70 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSCSS--EEETEEEETTEEEEEE----TTSEEEEEETTTSEEEEEEECSSCGG-----S
T ss_pred EEEEEECCCCCEEEEEEC--CCCCCC--ccceEEEeCCEEEEEc----CCCEEEEEECCCCCEEEEeecccccc-----c
Confidence 4567777665 587741 111111 1122455788888874 245799999977654 2244444321 1
Q ss_pred cccccceeeEecCeEEEEEeCCCCCEEEEEEee---C-CeeeE-EEEecCCCcceeeEEEeeCCeEEEEEcCCeEEEEEC
Q 039662 258 SVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMT---G-GNWTK-HSTFGPFIETYQPIGFWRKGEFFLESSDKRVVLYDS 332 (366)
Q Consensus 258 ~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~---~-~~W~~-~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~ 332 (366)
.. ...+|.+++...+ . .|+.++ | ..|.. ...-+.............++.+++...++.++.+|+
T Consensus 71 ~~------~~~~~~v~v~~~~---~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 71 AP------VVDGGRVYVGTSD---G--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp GE------EEETTEEEEEETT---S--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred ee------eecccccccccce---e--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 12 6667888777632 2 666666 4 67884 333222221111111122455666666899999999
Q ss_pred CCCeEEEE
Q 039662 333 TYQEMRDI 340 (366)
Q Consensus 333 ~~~~~~~i 340 (366)
++++..+-
T Consensus 140 ~tG~~~w~ 147 (238)
T PF13360_consen 140 KTGKLLWK 147 (238)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEE
Confidence 99987553
No 59
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=78.49 E-value=67 Score=31.08 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=39.6
Q ss_pred CCCEEEEEEee-CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEcCCeEEEEECCCCeEEEEEEeCcEEEEEEeee
Q 039662 280 FAHTFELWTMT-GGNWTKHSTFGPFIETYQPIGFWRKGEFFLESSDKRVVLYDSTYQEMRDIRITGLWFTVHVLKE 354 (366)
Q Consensus 280 ~~~~~~IW~l~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~~~~~~~i~~~~~~~~~~~y~~ 354 (366)
....+.+|- + .-.|+++..-+ ..-.+++..|-+.+-...++.++.|-+++.+-.+...+++..++-|.|
T Consensus 388 qdk~v~lW~-~~k~~wt~~~~d~-----~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp 457 (626)
T KOG2106|consen 388 QDKHVRLWN-DHKLEWTKIIEDP-----AECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP 457 (626)
T ss_pred CcceEEEcc-CCceeEEEEecCc-----eeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC
Confidence 345556665 3 24566654221 123445556644444557888899988887777665555445555544
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.13 E-value=65 Score=30.78 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCceee-cCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCcee-eEe---CCCCCCCCCC
Q 039662 180 SHVAVYKFSTNSWRD-LEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVF-EEM---EGPSVPQSTT 254 (366)
Q Consensus 180 ~~~~vyss~~~~W~~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~-~~i---~~P~~~~~~~ 254 (366)
.++++|++.+..=+. +..+ .. ...+-.+.-+|.+-..+ +..+.|-.||+.+... +.+ +.|..
T Consensus 48 ~rvqly~~~~~~~~k~~srF----k~-~v~s~~fR~DG~LlaaG---D~sG~V~vfD~k~r~iLR~~~ah~apv~----- 114 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRF----KD-VVYSVDFRSDGRLLAAG---DESGHVKVFDMKSRVILRQLYAHQAPVH----- 114 (487)
T ss_pred cEEEEEecchhhhhhhHHhh----cc-ceeEEEeecCCeEEEcc---CCcCcEEEeccccHHHHHHHhhccCcee-----
Confidence 489999998864333 2111 00 01123344579998875 3345799999666322 222 22221
Q ss_pred ccccccccceeeEecCeEEEEEeCCCCCEEEEEEeeCCeeeEEEEecCCCcceeeEEEe-eCCeEEEEEc-CCeEEEEEC
Q 039662 255 YYQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMTGGNWTKHSTFGPFIETYQPIGFW-RKGEFFLESS-DKRVVLYDS 332 (366)
Q Consensus 255 ~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~g~i~~~~~-~~~~~~yd~ 332 (366)
.... ...++.+.+.+. +.....+|.+.+.. . +..+.-..++.+-..+. .++-|++... ++.+-.||.
T Consensus 115 -~~~f------~~~d~t~l~s~s--Dd~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 115 -VTKF------SPQDNTMLVSGS--DDKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred -EEEe------cccCCeEEEecC--CCceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 1222 334566555554 56789999988422 2 44444222332323232 3445666543 888999999
Q ss_pred CCCeEEEEEEe-CcEEEEEEeeec
Q 039662 333 TYQEMRDIRIT-GLWFTVHVLKES 355 (366)
Q Consensus 333 ~~~~~~~i~~~-~~~~~~~~y~~s 355 (366)
++..-+-+.++ |.+.+.++|.||
T Consensus 184 R~~~~~v~elnhg~pVe~vl~lps 207 (487)
T KOG0310|consen 184 RSLTSRVVELNHGCPVESVLALPS 207 (487)
T ss_pred ccCCceeEEecCCCceeeEEEcCC
Confidence 88862223343 333555555555
No 61
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=78.01 E-value=5.2 Score=24.89 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=20.8
Q ss_pred ceEEE-CceEEEEEecCCC---ceEEEEEeCCCceeeEe
Q 039662 210 FNVYL-NGFCYWVVCRPDY---SKAILSFSMSDEVFEEM 244 (366)
Q Consensus 210 ~~v~~-~G~lywl~~~~~~---~~~Il~fD~~~~~~~~i 244 (366)
.++.+ ++.+|.++..... ...+..||+++++|+.+
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 34555 5778877643211 33588999999999988
No 62
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=77.33 E-value=48 Score=28.75 Aligned_cols=104 Identities=15% Similarity=0.107 Sum_probs=63.3
Q ss_pred CceEEEEEecCCCceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceeeE-ecCeEEEEEeCCCCCEEEEEEee--C
Q 039662 215 NGFCYWVVCRPDYSKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLGT-YDDCLSLLYSDSFAHTFELWTMT--G 291 (366)
Q Consensus 215 ~G~lywl~~~~~~~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~~-~~G~L~~~~~~~~~~~~~IW~l~--~ 291 (366)
+|.+||.. .....|..+|..+++...+.+|.. ..+ ... -+|+|.++.. ..+.+. + .
T Consensus 11 ~g~l~~~D---~~~~~i~~~~~~~~~~~~~~~~~~-------~G~-----~~~~~~g~l~v~~~----~~~~~~--d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVD---IPGGRIYRVDPDTGEVEVIDLPGP-------NGM-----AFDRPDGRLYVADS----GGIAVV--DPDT 69 (246)
T ss_dssp TTEEEEEE---TTTTEEEEEETTTTEEEEEESSSE-------EEE-----EEECTTSEEEEEET----TCEEEE--ETTT
T ss_pred CCEEEEEE---cCCCEEEEEECCCCeEEEEecCCC-------ceE-----EEEccCCEEEEEEc----CceEEE--ecCC
Confidence 69999995 334579999999999988887761 112 022 3566666553 122222 5 3
Q ss_pred CeeeEEEEecCCC-cc--eeeEEEeeCCeEEEEEcC---------CeEEEEECCCCeEEEE
Q 039662 292 GNWTKHSTFGPFI-ET--YQPIGFWRKGEFFLESSD---------KRVVLYDSTYQEMRDI 340 (366)
Q Consensus 292 ~~W~~~~~i~~~~-~~--~~~~~~~~~g~i~~~~~~---------~~~~~yd~~~~~~~~i 340 (366)
.+++......... .. ..-+.+..+|.+++.... ++++.++.. ++.+.+
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 6777777764221 22 344566677888776531 568899988 665554
No 63
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.18 E-value=9.1 Score=21.28 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=20.9
Q ss_pred eCCeEEEEEcCCeEEEEECCCCeEEE
Q 039662 314 RKGEFFLESSDKRVVLYDSTYQEMRD 339 (366)
Q Consensus 314 ~~g~i~~~~~~~~~~~yd~~~~~~~~ 339 (366)
.+|.+++...++.++.+|.++++..+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 45667777778999999999988765
No 64
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=76.87 E-value=50 Score=28.82 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=70.8
Q ss_pred ecccceEEECceEEEEEecCCCceEEEEEeCCCcee-eEeCCCCCCCCC--------CccccccccceeeEecCeEEEEE
Q 039662 206 VDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVF-EEMEGPSVPQST--------TYYQSVKTPWMLGTYDDCLSLLY 276 (366)
Q Consensus 206 ~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~-~~i~~P~~~~~~--------~~~~~l~~~~~~~~~~G~L~~~~ 276 (366)
+....-|+.||++|... .+...|+.||++++.- ....+|...... .....+ ++.+.-|.+++
T Consensus 68 ~~gTg~VVynGs~yynk---~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~------avDE~GLWviY 138 (249)
T KOG3545|consen 68 WDGTGHVVYNGSLYYNK---AGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDL------AVDENGLWVIY 138 (249)
T ss_pred ccccceEEEcceEEeec---cCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccc------eecccceeEEe
Confidence 34567789999999985 3455799999999643 445667654221 123445 66666677775
Q ss_pred eC-CCCCEEEEEEee------CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEc----CCeE-EEEECCCCeEEEEEE
Q 039662 277 SD-SFAHTFELWTMT------GGNWTKHSTFGPFIETYQPIGFWRKGEFFLESS----DKRV-VLYDSTYQEMRDIRI 342 (366)
Q Consensus 277 ~~-~~~~~~~IW~l~------~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~----~~~~-~~yd~~~~~~~~i~~ 342 (366)
.. .....+.|=.|+ +..|.-.+.-.-..+ ++.-+|-++.+.. +..+ +.||..+++-+.+.+
T Consensus 139 at~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~~-----aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 139 ATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAGN-----AFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDL 211 (249)
T ss_pred cccccCCcEEeeccCHHHhheeeeeccccCCCCcCc-----eEEEeeeeEEEeccccCCceEEEEEEcCCCceecccc
Confidence 43 234455556666 255643221111111 1222455555543 2333 699999888877653
No 65
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=74.50 E-value=62 Score=30.61 Aligned_cols=144 Identities=11% Similarity=0.063 Sum_probs=77.9
Q ss_pred eEE--eeecceEEEeec----C-CeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeeccc
Q 039662 100 IHI--GPYDGIFCLLKS----H-TLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDH 172 (366)
Q Consensus 100 ~~i--~s~~GLl~~~~~----~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~ 172 (366)
..| +--+.||+++-. . -+++|+|..|++..+|.........=-......+-=||--.+++||++-...
T Consensus 230 A~i~yA~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~----- 304 (448)
T PF12458_consen 230 AEIAYARVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDM----- 304 (448)
T ss_pred heeeeeecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccC-----
Confidence 455 566677787753 2 3799999999999998765432100000111122223433445555553211
Q ss_pred CCCCCCcceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCceeeEeCCCCCCCC
Q 039662 173 RDSFHDFSHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVFEEMEGPSVPQS 252 (366)
Q Consensus 173 ~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~~~i~~P~~~~~ 252 (366)
+ .+++ =|++ ..|.. ...+|.+-....+...++.||+-+.+ +..|..+.
T Consensus 305 -~----~l~F---------~r~v---rSPNG-----------EDvLYvF~~~~~g~~~Ll~YN~I~k~---v~tPi~ch- 352 (448)
T PF12458_consen 305 -D----GLEF---------ERKV---RSPNG-----------EDVLYVFYAREEGRYLLLPYNLIRKE---VATPIICH- 352 (448)
T ss_pred -C----CceE---------EEEe---cCCCC-----------ceEEEEEEECCCCcEEEEechhhhhh---hcCCeecc-
Confidence 0 0000 0112 11111 35788887666778889999987744 45555442
Q ss_pred CCccccccccceeeEecCeEEEEEeC-CC---CCEEEEEEee
Q 039662 253 TTYYQSVKTPWMLGTYDDCLSLLYSD-SF---AHTFELWTMT 290 (366)
Q Consensus 253 ~~~~~~l~~~~~~~~~~G~L~~~~~~-~~---~~~~~IW~l~ 290 (366)
+.. .--+|+|++.... .+ .--|+||.--
T Consensus 353 G~a----------lf~DG~l~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 353 GYA----------LFEDGRLVYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred cee----------EecCCEEEEEecCCCCcceeccceeecCC
Confidence 111 4458999998654 22 2356888743
No 66
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=74.05 E-value=15 Score=27.83 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=28.6
Q ss_pred EEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEE
Q 039662 118 INLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLIL 166 (366)
Q Consensus 118 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 166 (366)
+.+.||.|+.|. |..... .....+.+-+++..+.|.|+...
T Consensus 11 Vm~~d~~tk~W~--P~~~~~------~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 11 VMVYDDSNKKWV--PAGGGS------QGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred eeEEcCCCCcEE--cCCCCC------CCcceEEEEEcCCCCEEEEEEee
Confidence 888999999855 433310 12234677788888899999765
No 67
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=73.47 E-value=93 Score=30.81 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=62.5
Q ss_pred cceEEECceEEEEEecCCCceEEEEEeCCCc--eeeE-eCCCCCCCCC----CccccccccceeeEecCeEEEEEeCCCC
Q 039662 209 IFNVYLNGFCYWVVCRPDYSKAILSFSMSDE--VFEE-MEGPSVPQST----TYYQSVKTPWMLGTYDDCLSLLYSDSFA 281 (366)
Q Consensus 209 ~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~--~~~~-i~~P~~~~~~----~~~~~l~~~~~~~~~~G~L~~~~~~~~~ 281 (366)
..++..+|.+|... .. ..|.++|..++ .|+. ...|...... .....+ ...+|++++...+ .
T Consensus 63 stPvv~~g~vyv~s--~~--g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~------av~~~~v~v~t~d--g 130 (527)
T TIGR03075 63 SQPLVVDGVMYVTT--SY--SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGV------ALYDGKVFFGTLD--A 130 (527)
T ss_pred cCCEEECCEEEEEC--CC--CcEEEEECCCCceeeEecCCCCcccccccccccccccc------eEECCEEEEEcCC--C
Confidence 56788899999865 22 36999999875 4543 2333222110 001123 4556776655432 1
Q ss_pred CEEEEEEee---C-CeeeEEEEecCCC--c-ceeeEEEeeCCeEEEEEc------CCeEEEEECCCCeEEE
Q 039662 282 HTFELWTMT---G-GNWTKHSTFGPFI--E-TYQPIGFWRKGEFFLESS------DKRVVLYDSTYQEMRD 339 (366)
Q Consensus 282 ~~~~IW~l~---~-~~W~~~~~i~~~~--~-~~~~~~~~~~g~i~~~~~------~~~~~~yd~~~~~~~~ 339 (366)
.+..|+ | ..|..... +... . ...|+.. ++.|++... ++.++.||.+|++..+
T Consensus 131 ---~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 131 ---RLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred ---EEEEEECCCCCEEeecccc-cccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 456666 3 56775431 1110 1 1234432 456665432 4689999999998766
No 68
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.37 E-value=8.9 Score=22.50 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=20.4
Q ss_pred CeEEEEEcCCeEEEEECCCCeEEEEE
Q 039662 316 GEFFLESSDKRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 316 g~i~~~~~~~~~~~yd~~~~~~~~i~ 341 (366)
|.+++...++.++.+|.+|++..+-.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEee
Confidence 35666666899999999999887743
No 69
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=70.26 E-value=10 Score=23.66 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=22.1
Q ss_pred EEEEEEeeecccCCCCCCcceEEEEEcCCCceeecC
Q 039662 161 KLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDLE 196 (366)
Q Consensus 161 kvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~ 196 (366)
|++.+..... .........+++|+.+++.|+.++
T Consensus 13 kiyv~GG~~~--~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 13 KIYVFGGYGT--DNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred EEEEECCccc--CCCCcccceeEEEECCCCEEeecC
Confidence 6666654100 122234568999999999999984
No 70
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=69.90 E-value=88 Score=28.51 Aligned_cols=107 Identities=13% Similarity=0.000 Sum_probs=57.8
Q ss_pred CceEEEEEecCCCceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceeeEecCeEEEEEeCCCCCEEEEEEee-CCe
Q 039662 215 NGFCYWVVCRPDYSKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMT-GGN 293 (366)
Q Consensus 215 ~G~lywl~~~~~~~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~-~~~ 293 (366)
.+.+||.- .....|+.+|.++++-+.++.|...... .+ ..-+|.|..+.. .+.++..+ +..
T Consensus 36 ~~~L~w~D---I~~~~i~r~~~~~g~~~~~~~p~~~~~~----~~------~d~~g~Lv~~~~-----g~~~~~~~~~~~ 97 (307)
T COG3386 36 RGALLWVD---ILGGRIHRLDPETGKKRVFPSPGGFSSG----AL------IDAGGRLIACEH-----GVRLLDPDTGGK 97 (307)
T ss_pred CCEEEEEe---CCCCeEEEecCCcCceEEEECCCCcccc----ee------ecCCCeEEEEcc-----ccEEEeccCCce
Confidence 35689984 4456799999999999999999876321 11 333444443322 11222223 344
Q ss_pred eeEEEEecCCC--cceeeEEEeeCCeEEEEEc------------CCeEEEEECCCCeEEE
Q 039662 294 WTKHSTFGPFI--ETYQPIGFWRKGEFFLESS------------DKRVVLYDSTYQEMRD 339 (366)
Q Consensus 294 W~~~~~i~~~~--~~~~~~~~~~~g~i~~~~~------------~~~~~~yd~~~~~~~~ 339 (366)
|.......... .......+..+|.+++... .+.++.+|+.+++.+-
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l 157 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL 157 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe
Confidence 44444433211 1122344455566666432 2469999985544443
No 71
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=69.34 E-value=86 Score=30.18 Aligned_cols=121 Identities=15% Similarity=0.178 Sum_probs=62.2
Q ss_pred cceEEECceEEEEEecC-------------------------------CC-------ceEEEEEeCCCceeeEe--CCCC
Q 039662 209 IFNVYLNGFCYWVVCRP-------------------------------DY-------SKAILSFSMSDEVFEEM--EGPS 248 (366)
Q Consensus 209 ~~~v~~~G~lywl~~~~-------------------------------~~-------~~~Il~fD~~~~~~~~i--~~P~ 248 (366)
+.+|.+.+.+|+++.+. ++ ...|..||+++++...+ .+|-
T Consensus 229 S~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl 308 (668)
T COG4946 229 SSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPL 308 (668)
T ss_pred CCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCcc
Confidence 67889999999998531 11 34589999999998775 4565
Q ss_pred CCCCC-C------ccc-cccccceeeEecCeEEEEEeCCCCCEEEEEEeeCCeeeEEEEecCCCcc-eeeEEEeeCCeEE
Q 039662 249 VPQST-T------YYQ-SVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMTGGNWTKHSTFGPFIET-YQPIGFWRKGEFF 319 (366)
Q Consensus 249 ~~~~~-~------~~~-~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~-~~~~~~~~~g~i~ 319 (366)
..... . .+. .. ...+|.+.........-.+..|.-- ...+.....+ ++-+....++.++
T Consensus 309 ~rk~k~~k~~~pskyledf------a~~~Gd~ia~VSRGkaFi~~~~~~~------~iqv~~~~~VrY~r~~~~~e~~vi 376 (668)
T COG4946 309 DRKKKQPKFVNPSKYLEDF------AVVNGDYIALVSRGKAFIMRPWDGY------SIQVGKKGGVRYRRIQVDPEGDVI 376 (668)
T ss_pred ccccccccccCHHHhhhhh------ccCCCcEEEEEecCcEEEECCCCCe------eEEcCCCCceEEEEEccCCcceEE
Confidence 52111 0 011 12 4445554443332333344444210 0111111111 1222222233333
Q ss_pred EEEcCCeEEEEECCCCeEEEEE
Q 039662 320 LESSDKRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 320 ~~~~~~~~~~yd~~~~~~~~i~ 341 (366)
-..++..+..||.++++++++.
T Consensus 377 gt~dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred eccCCceEEEEecCCceEEEee
Confidence 3333457888888888887765
No 72
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=68.70 E-value=4.5 Score=25.16 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=14.1
Q ss_pred eEEEEeCCCcceeecCCCC
Q 039662 117 LINLWNVSLNEYRVIPECR 135 (366)
Q Consensus 117 ~~~V~NP~T~~~~~LP~~~ 135 (366)
.++++|+.|++|.++|++|
T Consensus 30 d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 30 DLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -EEEEETTTTEEEE--SS-
T ss_pred CEEEEECCCCEEEECCCCC
Confidence 3899999999999997765
No 73
>PF13013 F-box-like_2: F-box-like domain
Probab=65.65 E-value=4.5 Score=30.50 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=23.1
Q ss_pred ccCCcHHHHHHHHhcCChhhhhhheechh
Q 039662 3 VKYLSDDMMIETLSRLPVKSLMRFQCVCK 31 (366)
Q Consensus 3 ~~~LP~Dll~eIL~rLP~~sl~r~~~VcK 31 (366)
..+||+||+..|+..-...++...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56899999999999998777765555555
No 74
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=63.80 E-value=1.3e+02 Score=28.26 Aligned_cols=188 Identities=10% Similarity=0.032 Sum_probs=97.8
Q ss_pred eecceEEEeecCCeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEE
Q 039662 104 PYDGIFCLLKSHTLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVA 183 (366)
Q Consensus 104 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 183 (366)
..+|.|.+...+..++.+|+.|++.+.-=..+... ... ..+ .+ + +|+.... + -.+.
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----~ss--P~v-~~----~-~v~v~~~------~-----g~l~ 173 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA-----LSR--PVV-SD----G-LVLVHTS------N-----GMLQ 173 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccCCCce-----ecC--CEE-EC----C-EEEEECC------C-----CEEE
Confidence 34677776666666888999998866421111100 000 011 11 1 2332111 1 1456
Q ss_pred EEEcCCC--ceeecCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCce--eeE-eCCCCCCCCC----C
Q 039662 184 VYKFSTN--SWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEV--FEE-MEGPSVPQST----T 254 (366)
Q Consensus 184 vyss~~~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~--~~~-i~~P~~~~~~----~ 254 (366)
.++..++ .|+.-.. .+.........++..+|.+|+.. . ...+.++|.++++ |+. +..|...... .
T Consensus 174 ald~~tG~~~W~~~~~--~~~~~~~~~~sP~v~~~~v~~~~--~--~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 174 ALNESDGAVKWTVNLD--VPSLTLRGESAPATAFGGAIVGG--D--NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred EEEccCCCEeeeecCC--CCcccccCCCCCEEECCEEEEEc--C--CCEEEEEEccCChhhheeccccCCCccchhcccc
Confidence 6777665 5877532 11111112346677788888864 2 3469999998865 432 2233221100 0
Q ss_pred ccccccccceeeEecCeEEEEEeCCCCCEEEEEEee---C-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEcCCeEEEE
Q 039662 255 YYQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMT---G-GNWTKHSTFGPFIETYQPIGFWRKGEFFLESSDKRVVLY 330 (366)
Q Consensus 255 ~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~---~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~y 330 (366)
..... +..+|.|++...+ . .+..++ | ..|.+.. . ....++ ..++.+++...++.++.+
T Consensus 248 ~~~sP------~v~~~~vy~~~~~---g--~l~ald~~tG~~~W~~~~--~---~~~~~~--~~~~~vy~~~~~g~l~al 309 (394)
T PRK11138 248 VDTTP------VVVGGVVYALAYN---G--NLVALDLRSGQIVWKREY--G---SVNDFA--VDGGRIYLVDQNDRVYAL 309 (394)
T ss_pred cCCCc------EEECCEEEEEEcC---C--eEEEEECCCCCEEEeecC--C---CccCcE--EECCEEEEEcCCCeEEEE
Confidence 01222 4557777766542 1 344555 3 5687632 1 111222 245778888778999999
Q ss_pred ECCCCeEEE
Q 039662 331 DSTYQEMRD 339 (366)
Q Consensus 331 d~~~~~~~~ 339 (366)
|.++++..+
T Consensus 310 d~~tG~~~W 318 (394)
T PRK11138 310 DTRGGVELW 318 (394)
T ss_pred ECCCCcEEE
Confidence 999886544
No 75
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=62.75 E-value=1.3e+02 Score=27.95 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=74.1
Q ss_pred eEEEEEcCCCceeecCCCccccceeecccc-eEEECceEEEEEecCCCceEEEEEeCCCce--eeEeCCC--CCCCCCCc
Q 039662 181 HVAVYKFSTNSWRDLEGFEMRYDYMVDRIF-NVYLNGFCYWVVCRPDYSKAILSFSMSDEV--FEEMEGP--SVPQSTTY 255 (366)
Q Consensus 181 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~Il~fD~~~~~--~~~i~~P--~~~~~~~~ 255 (366)
.......++..|..... .... ..+ ... ++..+|.+|... .++ .|.+||.++.+ |+.-... ....
T Consensus 36 ~~~~~~~g~~~W~~~~~-~~~~-~~~-~~~~~~~~dg~v~~~~--~~G--~i~A~d~~~g~~~W~~~~~~~~~~~~---- 104 (370)
T COG1520 36 AVANNTSGTLLWSVSLG-SGGG-GIY-AGPAPADGDGTVYVGT--RDG--NIFALNPDTGLVKWSYPLLGAVAQLS---- 104 (370)
T ss_pred EEEcccCcceeeeeecc-cCcc-ceE-eccccEeeCCeEEEec--CCC--cEEEEeCCCCcEEecccCcCcceecc----
Confidence 44455566778864310 1111 111 123 589999999985 333 79999999876 6443332 1111
Q ss_pred cccccccceeeEecCeEEEEEeCCCCCEEEEEEee---C-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEcCCeEEEEE
Q 039662 256 YQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMT---G-GNWTKHSTFGPFIETYQPIGFWRKGEFFLESSDKRVVLYD 331 (366)
Q Consensus 256 ~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~---~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd 331 (366)
... ...+|+|.+-..+. .++.++ | ..|.....- . ..+..+. +..++.+++...++.++..|
T Consensus 105 -~~~------~~~~G~i~~g~~~g-----~~y~ld~~~G~~~W~~~~~~-~-~~~~~~~-v~~~~~v~~~s~~g~~~al~ 169 (370)
T COG1520 105 -GPI------LGSDGKIYVGSWDG-----KLYALDASTGTLVWSRNVGG-S-PYYASPP-VVGDGTVYVGTDDGHLYALN 169 (370)
T ss_pred -Cce------EEeCCeEEEecccc-----eEEEEECCCCcEEEEEecCC-C-eEEecCc-EEcCcEEEEecCCCeEEEEE
Confidence 111 33377765554321 666666 3 566665433 1 1111111 22456666665678999999
Q ss_pred CCCCeEEEE
Q 039662 332 STYQEMRDI 340 (366)
Q Consensus 332 ~~~~~~~~i 340 (366)
.++++..+-
T Consensus 170 ~~tG~~~W~ 178 (370)
T COG1520 170 ADTGTLKWT 178 (370)
T ss_pred ccCCcEEEE
Confidence 998877664
No 76
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=62.38 E-value=18 Score=26.19 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=14.9
Q ss_pred CCeEEEEECCCCeEEEEE
Q 039662 324 DKRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 324 ~~~~~~yd~~~~~~~~i~ 341 (366)
.++++.||++||+.+.+-
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 478999999999988754
No 77
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=62.15 E-value=1.3e+02 Score=27.69 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=72.0
Q ss_pred CceEEEEEecCCCceEEEEEeCCCceeeEe---CCCCCCCCCCccccccccceeeEecCeEEEEEeCCCCCEEEEEEee-
Q 039662 215 NGFCYWVVCRPDYSKAILSFSMSDEVFEEM---EGPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMT- 290 (366)
Q Consensus 215 ~G~lywl~~~~~~~~~Il~fD~~~~~~~~i---~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~- 290 (366)
+|.+-|.. .-+...|..||++.++.... .+++..+. ..+ ..--+|+++.+.. +-..++.+|..+
T Consensus 155 ~~~~l~v~--DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP----RHi-----~FHpn~k~aY~v~-EL~stV~v~~y~~ 222 (346)
T COG2706 155 DGRYLVVP--DLGTDRIFLYDLDDGKLTPADPAEVKPGAGP----RHI-----VFHPNGKYAYLVN-ELNSTVDVLEYNP 222 (346)
T ss_pred CCCEEEEe--ecCCceEEEEEcccCccccccccccCCCCCc----ceE-----EEcCCCcEEEEEe-ccCCEEEEEEEcC
Confidence 35444444 44566788888887666432 44444322 111 1444888877754 356899999998
Q ss_pred C-CeeeEEEEecCCC-c-----ceeeEEEeeCCeEEEEEc----CCeEEEEECCCCeEEEEEE
Q 039662 291 G-GNWTKHSTFGPFI-E-----TYQPIGFWRKGEFFLESS----DKRVVLYDSTYQEMRDIRI 342 (366)
Q Consensus 291 ~-~~W~~~~~i~~~~-~-----~~~~~~~~~~g~i~~~~~----~~~~~~yd~~~~~~~~i~~ 342 (366)
. ++-..+.++..++ . -..-+-+..+|.++...+ .-.++.-|..+++++-+..
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 2 7777888877543 2 234566778888777654 2235666777888776653
No 78
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.99 E-value=41 Score=31.00 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=69.5
Q ss_pred eEEEEEcCCCceeecCCCccccceeecccceEEECc-eEEEEEecC---------------------------------C
Q 039662 181 HVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNG-FCYWVVCRP---------------------------------D 226 (366)
Q Consensus 181 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~---------------------------------~ 226 (366)
.+..|++.+++|.+... ..|.. .....++..++ .+|.+..-. +
T Consensus 114 d~Y~y~p~~nsW~kl~t-~sP~g--l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~ 190 (381)
T COG3055 114 DAYRYDPSTNSWHKLDT-RSPTG--LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAE 190 (381)
T ss_pred eeEEecCCCChhheecc-ccccc--cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHH
Confidence 56788999999999841 22222 22234444455 677776310 0
Q ss_pred ---CceEEEEEeCCCceeeEe-CCCCCCCCCCccccccccceeeEecCeEEEEEe--CCCCCEEEEEEee---C-CeeeE
Q 039662 227 ---YSKAILSFSMSDEVFEEM-EGPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYS--DSFAHTFELWTMT---G-GNWTK 296 (366)
Q Consensus 227 ---~~~~Il~fD~~~~~~~~i-~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~--~~~~~~~~IW~l~---~-~~W~~ 296 (366)
-...+++||..++.|+.. ..|....++. .. +..+++|.++.. .+.-++-++|+.+ + ..|.+
T Consensus 191 dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGs---a~------~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 191 DYFFNKEVLSYDPSTNQWRNLGENPFYGNAGS---AV------VIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred HhcccccccccccccchhhhcCcCcccCccCc---ce------eecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 033599999999999887 4666543321 12 444666888842 3455677888877 2 89999
Q ss_pred EEEecCC
Q 039662 297 HSTFGPF 303 (366)
Q Consensus 297 ~~~i~~~ 303 (366)
.-..+..
T Consensus 262 l~~lp~~ 268 (381)
T COG3055 262 LSDLPAP 268 (381)
T ss_pred ccCCCCC
Confidence 9877753
No 79
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=59.66 E-value=23 Score=21.95 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=17.1
Q ss_pred cceEEEEEcCCCceeecCCCcc
Q 039662 179 FSHVAVYKFSTNSWRDLEGFEM 200 (366)
Q Consensus 179 ~~~~~vyss~~~~W~~~~~~~~ 200 (366)
.-.+.+|+..+++|++++..|.
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCC
Confidence 3477899999999999964433
No 80
>PLN02772 guanylate kinase
Probab=57.81 E-value=86 Score=29.66 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=48.4
Q ss_pred ccceEEECceEEEEEecCCC---ceEEEEEeCCCceeeEeC----CCCCCCCCCccccccccceeeEecCeEEEEEeCCC
Q 039662 208 RIFNVYLNGFCYWVVCRPDY---SKAILSFSMSDEVFEEME----GPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSF 280 (366)
Q Consensus 208 ~~~~v~~~G~lywl~~~~~~---~~~Il~fD~~~~~~~~i~----~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~ 280 (366)
...+|.+++.+|.++...++ ...+..||..+.+|..-. .|... .++ -.. +.-+++|.++-.+ .
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r-~Gh--Sa~------v~~~~rilv~~~~-~ 96 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC-KGY--SAV------VLNKDRILVIKKG-S 96 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC-Ccc--eEE------EECCceEEEEeCC-C
Confidence 36788999999999854332 347999999999997532 23222 121 111 3447888888653 3
Q ss_pred CCEEEEEEee
Q 039662 281 AHTFELWTMT 290 (366)
Q Consensus 281 ~~~~~IW~l~ 290 (366)
...=+||.|+
T Consensus 97 ~~~~~~w~l~ 106 (398)
T PLN02772 97 APDDSIWFLE 106 (398)
T ss_pred CCccceEEEE
Confidence 4458999998
No 81
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=53.67 E-value=1.9e+02 Score=26.87 Aligned_cols=101 Identities=9% Similarity=0.017 Sum_probs=53.6
Q ss_pred eeecceEEEeecCCeEEEEeCCCcceee---cCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCc
Q 039662 103 GPYDGIFCLLKSHTLINLWNVSLNEYRV---IPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDF 179 (366)
Q Consensus 103 ~s~~GLl~~~~~~~~~~V~NP~T~~~~~---LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~ 179 (366)
...+|.+.+....+.++.+|+.|++... ++.... .+...+ ++ +|+.... +
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~------------~~p~v~---~~-~v~v~~~------~----- 114 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLS------------GGVGAD---GG-LVFVGTE------K----- 114 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc------------cceEEc---CC-EEEEEcC------C-----
Confidence 3346667666665568888999988653 222110 011111 11 2222111 1
Q ss_pred ceEEEEEcCCC--ceeecCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCcee
Q 039662 180 SHVAVYKFSTN--SWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVF 241 (366)
Q Consensus 180 ~~~~vyss~~~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~ 241 (366)
-.+..++..++ .|+... +.. ....++..+|.+|... . ...|.++|.++++.
T Consensus 115 g~l~ald~~tG~~~W~~~~--~~~-----~~~~p~v~~~~v~v~~--~--~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKL--SSE-----VLSPPLVANGLVVVRT--N--DGRLTALDAATGER 167 (377)
T ss_pred CEEEEEECCCCcEeeeecc--Cce-----eecCCEEECCEEEEEC--C--CCeEEEEEcCCCce
Confidence 14556665554 587652 111 1144566788888764 2 34699999987653
No 82
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=53.55 E-value=35 Score=25.60 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=28.6
Q ss_pred eEEEEeCCCc-ceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEE
Q 039662 117 LINLWNVSLN-EYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLIL 166 (366)
Q Consensus 117 ~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 166 (366)
.++++||.|+ .|. |..+. ...+.+-+|+..+.|+||.+.
T Consensus 12 ~V~~yd~~tKk~Wv--Ps~~~---------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 12 HVFQIDPKTKKNWI--PASKH---------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EEEEECCCCcceeE--eCCCC---------ceeEEEEecCCCcEEEEEEec
Confidence 3899999997 665 43331 134778889999999999864
No 83
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=51.31 E-value=2.1e+02 Score=26.61 Aligned_cols=190 Identities=8% Similarity=0.036 Sum_probs=93.4
Q ss_pred eecceEEEeecCCeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEE
Q 039662 104 PYDGIFCLLKSHTLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVA 183 (366)
Q Consensus 104 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 183 (366)
..+|.+.+...++.++.+|+.|++.+.--...... ... ..+ . ++ +|+.... + -.+.
T Consensus 103 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----~~~--p~v-~----~~-~v~v~~~------~-----g~l~ 158 (377)
T TIGR03300 103 ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEV-----LSP--PLV-A----NG-LVVVRTN------D-----GRLT 158 (377)
T ss_pred EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCcee-----ecC--CEE-E----CC-EEEEECC------C-----CeEE
Confidence 34666666665566888888888765421111100 000 001 1 11 2332211 1 1456
Q ss_pred EEEcCCC--ceeecCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCce--eeE-eCCCCCCCCCC----
Q 039662 184 VYKFSTN--SWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEV--FEE-MEGPSVPQSTT---- 254 (366)
Q Consensus 184 vyss~~~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~--~~~-i~~P~~~~~~~---- 254 (366)
.++..++ .|+... ..+.........++..+|.+|.-. . ...+.++|.++++ |+. +..|.......
T Consensus 159 a~d~~tG~~~W~~~~--~~~~~~~~~~~sp~~~~~~v~~~~--~--~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~ 232 (377)
T TIGR03300 159 ALDAATGERLWTYSR--VTPALTLRGSASPVIADGGVLVGF--A--GGKLVALDLQTGQPLWEQRVALPKGRTELERLVD 232 (377)
T ss_pred EEEcCCCceeeEEcc--CCCceeecCCCCCEEECCEEEEEC--C--CCEEEEEEccCCCEeeeeccccCCCCCchhhhhc
Confidence 6676655 587652 111111112245677788777543 2 2469999998764 432 22332211000
Q ss_pred ccccccccceeeEecCeEEEEEeCCCCCEEEEEEee-C-CeeeEEEEecCCCcceeeEEEeeCCeEEEEEcCCeEEEEEC
Q 039662 255 YYQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMT-G-GNWTKHSTFGPFIETYQPIGFWRKGEFFLESSDKRVVLYDS 332 (366)
Q Consensus 255 ~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~-~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~ 332 (366)
..... ...+|.+++... ...+..+-++ | ..|.... . ....|. + .++.+++...++.++.+|.
T Consensus 233 ~~~~p------~~~~~~vy~~~~---~g~l~a~d~~tG~~~W~~~~--~---~~~~p~-~-~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 233 VDGDP------VVDGGQVYAVSY---QGRVAALDLRSGRVLWKRDA--S---SYQGPA-V-DDNRLYVTDADGVVVALDR 296 (377)
T ss_pred cCCcc------EEECCEEEEEEc---CCEEEEEECCCCcEEEeecc--C---CccCce-E-eCCEEEEECCCCeEEEEEC
Confidence 01122 344666666543 2344444444 4 5676541 1 112232 1 3567777777889999999
Q ss_pred CCCeEEE
Q 039662 333 TYQEMRD 339 (366)
Q Consensus 333 ~~~~~~~ 339 (366)
.+++..+
T Consensus 297 ~tG~~~W 303 (377)
T TIGR03300 297 RSGSELW 303 (377)
T ss_pred CCCcEEE
Confidence 8876543
No 84
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=50.88 E-value=2.2e+02 Score=26.76 Aligned_cols=135 Identities=12% Similarity=0.080 Sum_probs=68.4
Q ss_pred eEEEEEcCCC--ceeecCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCce--eeE-eCCCCCCCCCCc
Q 039662 181 HVAVYKFSTN--SWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEV--FEE-MEGPSVPQSTTY 255 (366)
Q Consensus 181 ~~~vyss~~~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~--~~~-i~~P~~~~~~~~ 255 (366)
.+..++.+++ .|+.-. +.. ....++..+|.+|... . ...|.+||.++++ |+. ...|..... .
T Consensus 131 ~l~ald~~tG~~~W~~~~--~~~-----~~ssP~v~~~~v~v~~--~--~g~l~ald~~tG~~~W~~~~~~~~~~~~--~ 197 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKV--AGE-----ALSRPVVSDGLVLVHT--S--NGMLQALNESDGAVKWTVNLDVPSLTLR--G 197 (394)
T ss_pred EEEEEECCCCCCcccccC--CCc-----eecCCEEECCEEEEEC--C--CCEEEEEEccCCCEeeeecCCCCccccc--C
Confidence 4455665554 697652 111 1245677899999764 2 3479999998865 433 122221100 0
Q ss_pred cccccccceeeEecCeEEEEEeCCCCCEEEEEEee-C-CeeeEEEEecC-------CC-cceeeEEEeeCCeEEEEEcCC
Q 039662 256 YQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMT-G-GNWTKHSTFGP-------FI-ETYQPIGFWRKGEFFLESSDK 325 (366)
Q Consensus 256 ~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~-~-~~W~~~~~i~~-------~~-~~~~~~~~~~~g~i~~~~~~~ 325 (366)
.... ...+|.+.+... ...+.-.-.+ | ..|......+. .. ....|+. .++.+++...++
T Consensus 198 ~~sP------~v~~~~v~~~~~---~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v--~~~~vy~~~~~g 266 (394)
T PRK11138 198 ESAP------ATAFGGAIVGGD---NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV--VGGVVYALAYNG 266 (394)
T ss_pred CCCC------EEECCEEEEEcC---CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE--ECCEEEEEEcCC
Confidence 1122 334555444332 1222111112 3 56654321111 00 1123443 356777777788
Q ss_pred eEEEEECCCCeEEE
Q 039662 326 RVVLYDSTYQEMRD 339 (366)
Q Consensus 326 ~~~~yd~~~~~~~~ 339 (366)
.++.+|+++++..+
T Consensus 267 ~l~ald~~tG~~~W 280 (394)
T PRK11138 267 NLVALDLRSGQIVW 280 (394)
T ss_pred eEEEEECCCCCEEE
Confidence 99999999987544
No 85
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=50.34 E-value=2.1e+02 Score=26.47 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=62.7
Q ss_pred CceEEEEEecCCCceEEEEEeCCCceeeEe---CCCCCCCCCCccccccccceeeEe---cCeEEEEEeC-----CCCCE
Q 039662 215 NGFCYWVVCRPDYSKAILSFSMSDEVFEEM---EGPSVPQSTTYYQSVKTPWMLGTY---DDCLSLLYSD-----SFAHT 283 (366)
Q Consensus 215 ~G~lywl~~~~~~~~~Il~fD~~~~~~~~i---~~P~~~~~~~~~~~l~~~~~~~~~---~G~L~~~~~~-----~~~~~ 283 (366)
+|.+||.+ .. ..|...|++.+.-... ++-...+...+ .+ --+|.+..+ .|+|+++... -....
T Consensus 195 ~~~~~F~S--y~--G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~-Wr-PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpg 268 (342)
T PF06433_consen 195 GGRLYFVS--YE--GNVYSADLSGDSAKFGKPWSLLTDAEKADG-WR-PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPG 268 (342)
T ss_dssp TTEEEEEB--TT--SEEEEEEETTSSEEEEEEEESS-HHHHHTT-EE-E-SSS-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred CCeEEEEe--cC--CEEEEEeccCCcccccCcccccCccccccC-cC-CcceeeeeeccccCeEEEEecCCCCCCccCCc
Confidence 36788886 33 3699999998764333 22111100000 00 012222544 5788887321 14457
Q ss_pred EEEEEeeCCeeeEEEEecCCCcceeeEEEeeCCe-EEEE-Ec-CCeEEEEECCCCeEEE
Q 039662 284 FELWTMTGGNWTKHSTFGPFIETYQPIGFWRKGE-FFLE-SS-DKRVVLYDSTYQEMRD 339 (366)
Q Consensus 284 ~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~~-~~~~~~yd~~~~~~~~ 339 (366)
=+||+++-..=.++.+++.... ...+.+.++.+ +++. .. ++.+..||..|++..+
T Consensus 269 teVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred eEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 7999999211245666664322 22466777765 4443 33 5789999999986543
No 86
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=47.06 E-value=2.2e+02 Score=25.76 Aligned_cols=118 Identities=9% Similarity=0.126 Sum_probs=62.2
Q ss_pred CceEEEEEecCCCceEEEEEeCC--CceeeEe----CCCCCCCCCCccccccccceeeEecCeEEEEEeCCCCCEEEEEE
Q 039662 215 NGFCYWVVCRPDYSKAILSFSMS--DEVFEEM----EGPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWT 288 (366)
Q Consensus 215 ~G~lywl~~~~~~~~~Il~fD~~--~~~~~~i----~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~ 288 (366)
+|...+.+ ......|..||++ ++++..+ ..|...........+ ...-+|+..++.. ...+.+.+|-
T Consensus 185 dg~~lyv~--~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i-----~~~pdg~~lyv~~-~~~~~I~v~~ 256 (330)
T PRK11028 185 NQQYAYCV--NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI-----HITPDGRHLYACD-RTASLISVFS 256 (330)
T ss_pred CCCEEEEE--ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE-----EECCCCCEEEEec-CCCCeEEEEE
Confidence 55555554 3334568888876 3444333 234332111100111 1223566333332 3567999998
Q ss_pred ee--CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEc--CCeEEEEEC--CCCeEEEEE
Q 039662 289 MT--GGNWTKHSTFGPFIETYQPIGFWRKGEFFLESS--DKRVVLYDS--TYQEMRDIR 341 (366)
Q Consensus 289 l~--~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~--~~~~~~yd~--~~~~~~~i~ 341 (366)
++ +..+..+..+... ...+-+.+..+|+.+++.. ++.+..|+. +++.++.+.
T Consensus 257 i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 257 VSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred EeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 87 3566666665532 1223456677887665543 566777754 567777654
No 87
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=46.05 E-value=14 Score=33.77 Aligned_cols=37 Identities=19% Similarity=0.470 Sum_probs=30.9
Q ss_pred ccCCcHHHHHHHHhcCC--------hhhhhhheechhhhhhhcCC
Q 039662 3 VKYLSDDMMIETLSRLP--------VKSLMRFQCVCKSWYDLVKD 39 (366)
Q Consensus 3 ~~~LP~Dll~eIL~rLP--------~~sl~r~~~VcK~W~~li~~ 39 (366)
.+.||.++|.+|+.|.- -++++.+..|||.|+....+
T Consensus 45 ~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 45 WAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 36899999999999984 23788999999999997754
No 88
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=44.44 E-value=39 Score=19.79 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=15.7
Q ss_pred eCCeEEEEEcCCeEEEEECCC
Q 039662 314 RKGEFFLESSDKRVVLYDSTY 334 (366)
Q Consensus 314 ~~g~i~~~~~~~~~~~yd~~~ 334 (366)
.+|.+++...++.++.+|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356788887799999999875
No 89
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.23 E-value=83 Score=32.82 Aligned_cols=70 Identities=19% Similarity=0.376 Sum_probs=47.6
Q ss_pred eEecCeEEEEEeCCCCCEEEEEEeeC-CeeeEEEEecCCCcceeeEEEeeCCeEEEEE-cCCeEEEEECCCCe
Q 039662 266 GTYDDCLSLLYSDSFAHTFELWTMTG-GNWTKHSTFGPFIETYQPIGFWRKGEFFLES-SDKRVVLYDSTYQE 336 (366)
Q Consensus 266 ~~~~G~L~~~~~~~~~~~~~IW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~~~~ 336 (366)
+..++.|=++....+...+.+|.|.+ ..|+.--.-.+..++...++ +.+-++++.. .++.+-+||+++++
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlf-hp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLF-HPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEe-cCccceeEecCCCccEEEEeccccc
Confidence 34456655555555778999999995 88987655566555555554 4555565554 47888899988764
No 90
>PF15408 PH_7: Pleckstrin homology domain
Probab=40.64 E-value=13 Score=26.33 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=19.8
Q ss_pred hhhhhhheechhhhhhhcCChHHH
Q 039662 20 VKSLMRFQCVCKSWYDLVKDPNFI 43 (366)
Q Consensus 20 ~~sl~r~~~VcK~W~~li~~~~F~ 43 (366)
++..+-.+-|||+|-....+|+|.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhh
Confidence 455666778999999999999984
No 91
>PRK04043 tolB translocation protein TolB; Provisional
Probab=40.50 E-value=3.4e+02 Score=25.98 Aligned_cols=111 Identities=7% Similarity=0.061 Sum_probs=0.0
Q ss_pred Cce-EEEEEecCCCceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceeeEecC-eEEEEEeCCCCCEEEEEEee--
Q 039662 215 NGF-CYWVVCRPDYSKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLGTYDD-CLSLLYSDSFAHTFELWTMT-- 290 (366)
Q Consensus 215 ~G~-lywl~~~~~~~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~~~~G-~L~~~~~~~~~~~~~IW~l~-- 290 (366)
+|. +.+......+...|..+|+.+++-+.+--......... ..-+| +|.+... ....-+||+++
T Consensus 198 DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~----------~SPDG~~la~~~~--~~g~~~Iy~~dl~ 265 (419)
T PRK04043 198 KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSD----------VSKDGSKLLLTMA--PKGQPDIYLYDTN 265 (419)
T ss_pred CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeE----------ECCCCCEEEEEEc--cCCCcEEEEEECC
Q ss_pred CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEcCC----eEEEEECCCCeEEEE
Q 039662 291 GGNWTKHSTFGPFIETYQPIGFWRKGEFFLESSDK----RVVLYDSTYQEMRDI 340 (366)
Q Consensus 291 ~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~----~~~~yd~~~~~~~~i 340 (366)
+..+.++..... ....-.+..+|+-+....+. .++.+|+++++.+++
T Consensus 266 ~g~~~~LT~~~~---~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 266 TKTLTQITNYPG---IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred CCcEEEcccCCC---ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
No 92
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=39.58 E-value=3.1e+02 Score=25.33 Aligned_cols=153 Identities=12% Similarity=0.131 Sum_probs=78.8
Q ss_pred eEEEEEcCCCceeecCCCccccceeecccceE-EECceEEEEEecCCCceEEEEEeCCCceeeEeC----CCCCCCCCCc
Q 039662 181 HVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNV-YLNGFCYWVVCRPDYSKAILSFSMSDEVFEEME----GPSVPQSTTY 255 (366)
Q Consensus 181 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~~~Il~fD~~~~~~~~i~----~P~~~~~~~~ 255 (366)
++.+|+..++.=.........+. .....-+ +-||.+-++...-.+.-.++.+|....++..++ +|.+......
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G--~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPG--AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred eEEEEEcccCccccccccccCCC--CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 88899998776655432122111 1112222 347775555533334445666666668887764 6766543322
Q ss_pred cccccccceeeEecCeEEEEEeCCCCCEEEEEEee--CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEc--C--CeEEE
Q 039662 256 YQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMT--GGNWTKHSTFGPFIETYQPIGFWRKGEFFLESS--D--KRVVL 329 (366)
Q Consensus 256 ~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~--~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~--~--~~~~~ 329 (366)
...+ -..-+|+-..++.. ..+.|-+...+ ++.=......+......+..-+..+|++++... + -.++.
T Consensus 246 ~aaI-----his~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 246 AAAI-----HISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred eeEE-----EECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence 2222 13447775445432 33433333333 233222222222212245566667777776643 2 23666
Q ss_pred EECCCCeEEEEE
Q 039662 330 YDSTYQEMRDIR 341 (366)
Q Consensus 330 yd~~~~~~~~i~ 341 (366)
-|.+|++++.+.
T Consensus 320 ~d~~TG~L~~~~ 331 (346)
T COG2706 320 RDKETGRLTLLG 331 (346)
T ss_pred EcCCCceEEecc
Confidence 678899998765
No 93
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=35.24 E-value=2.7e+02 Score=23.36 Aligned_cols=18 Identities=6% Similarity=0.198 Sum_probs=15.8
Q ss_pred CCeEEEEECCCCeEEEEE
Q 039662 324 DKRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 324 ~~~~~~yd~~~~~~~~i~ 341 (366)
++.|+.||+.|+.++.+.
T Consensus 139 GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 139 GGNLYKYNLNTGNLTELY 156 (200)
T ss_pred CCeEEEEEccCCceeEee
Confidence 678999999999998876
No 94
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=34.41 E-value=2.3e+02 Score=28.10 Aligned_cols=115 Identities=11% Similarity=0.124 Sum_probs=61.5
Q ss_pred eEEeeecceEEEeecCCeEEEEeCCCcceeecCCCCCCC--CCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCC
Q 039662 100 IHIGPYDGIFCLLKSHTLINLWNVSLNEYRVIPECRPRL--PLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFH 177 (366)
Q Consensus 100 ~~i~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~--~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 177 (366)
+.|..+||||++....+.+-.|+|-+++....-...... ..+........++.|....-+ ++++.
T Consensus 181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~---~aVGt---------- 247 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH---VAVGT---------- 247 (703)
T ss_pred eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee---EEeec----------
Confidence 344899999999988777999999998877532221110 011112233455666543211 33333
Q ss_pred CcceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCce
Q 039662 178 DFSHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEV 240 (366)
Q Consensus 178 ~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~ 240 (366)
..-.+.||++++..--.+. +.... -++ -.+.|+- .+.+..|++.|-...+
T Consensus 248 s~G~v~iyDLRa~~pl~~k--dh~~e------~pi---~~l~~~~--~~~q~~v~S~Dk~~~k 297 (703)
T KOG2321|consen 248 STGSVLIYDLRASKPLLVK--DHGYE------LPI---KKLDWQD--TDQQNKVVSMDKRILK 297 (703)
T ss_pred cCCcEEEEEcccCCceeec--ccCCc------cce---eeecccc--cCCCceEEecchHHhh
Confidence 1226789998876433332 10000 000 2456664 3345677777765543
No 95
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=33.12 E-value=5.9e+02 Score=26.67 Aligned_cols=32 Identities=6% Similarity=0.201 Sum_probs=23.8
Q ss_pred ccceEEECceEEEEEecCCCceEEEEEeCCCc--eeeE
Q 039662 208 RIFNVYLNGFCYWVVCRPDYSKAILSFSMSDE--VFEE 243 (366)
Q Consensus 208 ~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~--~~~~ 243 (366)
...++.++|.+|.-+ . ...|+++|.+++ .|+.
T Consensus 187 e~TPlvvgg~lYv~t--~--~~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCT--P--HNKVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEEC--C--CCeEEEEECCCCcEEEEE
Confidence 367889999999975 2 246999998865 4553
No 96
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.09 E-value=1.7e+02 Score=27.72 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=41.4
Q ss_pred eEecCeEEEEEeCCCCCEEEEEEeeCCeeeEEEEe-cCCC-cceeeEEEeeCC-eEEEEE-cCCeEEEEECCCCeEEEE
Q 039662 266 GTYDDCLSLLYSDSFAHTFELWTMTGGNWTKHSTF-GPFI-ETYQPIGFWRKG-EFFLES-SDKRVVLYDSTYQEMRDI 340 (366)
Q Consensus 266 ~~~~G~L~~~~~~~~~~~~~IW~l~~~~W~~~~~i-~~~~-~~~~~~~~~~~g-~i~~~~-~~~~~~~yd~~~~~~~~i 340 (366)
..-+|++.++.. ...++.+|=+++ |..+.+. +... .+.--.|+++.+ +++... .+.+++.||.+++.+-.+
T Consensus 403 iS~d~k~~LvnL--~~qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 403 ISKDGKLALVNL--QDQEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred EcCCCcEEEEEc--ccCeeEEeecch--hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 344788988876 678999998872 2222111 1111 122223455444 344443 378899999888776543
No 97
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.83 E-value=3.5e+02 Score=23.69 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=91.0
Q ss_pred ecceEEEeecC-CeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEE
Q 039662 105 YDGIFCLLKSH-TLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVA 183 (366)
Q Consensus 105 ~~GLl~~~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 183 (366)
.+|--|+..++ ..+-+|||..+...+-=... | ....-.+..+|.+ |+- -+. .--.+.
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-----G--~EVlD~~~s~Dns----kf~-s~G----------gDk~v~ 84 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-----G--HEVLDAALSSDNS----KFA-SCG----------GDKAVQ 84 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCC-----C--ceeeecccccccc----ccc-cCC----------CCceEE
Confidence 34556666543 35889999988766422111 1 1111134444433 111 111 122677
Q ss_pred EEEcCCC----ceeecCCCccccce-eecccceEEECceEEEEEecCCCceEEEEEeCCCceeeEeCCCCCCCCCCcccc
Q 039662 184 VYKFSTN----SWRDLEGFEMRYDY-MVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVFEEMEGPSVPQSTTYYQS 258 (366)
Q Consensus 184 vyss~~~----~W~~~~~~~~~~~~-~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~ 258 (366)
+++..|+ +||... ..-.. .+....+|.+.|.+ ...+-++|-.+..+..|+.=.....+.
T Consensus 85 vwDV~TGkv~Rr~rgH~---aqVNtV~fNeesSVv~Sgsf---------D~s~r~wDCRS~s~ePiQildea~D~V---- 148 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHL---AQVNTVRFNEESSVVASGSF---------DSSVRLWDCRSRSFEPIQILDEAKDGV---- 148 (307)
T ss_pred EEEcccCeeeeeccccc---ceeeEEEecCcceEEEeccc---------cceeEEEEcccCCCCccchhhhhcCce----
Confidence 8888775 577652 11111 12345566655554 235889999999998887655442211
Q ss_pred ccccceeeEecCeEEEEEeCCCCCEEEEEEee-CCeeeEEEEecCCCcceee---EEEeeCCeEEEEEc-CCeEEEEECC
Q 039662 259 VKTPWMLGTYDDCLSLLYSDSFAHTFELWTMT-GGNWTKHSTFGPFIETYQP---IGFWRKGEFFLESS-DKRVVLYDST 333 (366)
Q Consensus 259 l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~-~~~W~~~~~i~~~~~~~~~---~~~~~~g~i~~~~~-~~~~~~yd~~ 333 (366)
+.....+...+... ...++..+-+. |. + ..+++.+| +.+.++|...+... +..+-..|-+
T Consensus 149 -----~Si~v~~heIvaGS--~DGtvRtydiR~G~-------l-~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 149 -----SSIDVAEHEIVAGS--VDGTVRTYDIRKGT-------L-SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred -----eEEEecccEEEeec--cCCcEEEEEeecce-------e-ehhhcCCcceeEEecCCCCEEEEeeccceeeecccc
Confidence 11444555555533 22233333222 20 0 01223333 34566776555443 6667777777
Q ss_pred CCeE
Q 039662 334 YQEM 337 (366)
Q Consensus 334 ~~~~ 337 (366)
|+++
T Consensus 214 tGkl 217 (307)
T KOG0316|consen 214 TGKL 217 (307)
T ss_pred hhHH
Confidence 7665
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=31.24 E-value=3.5e+02 Score=23.41 Aligned_cols=119 Identities=10% Similarity=0.120 Sum_probs=60.7
Q ss_pred CceEEEEEecCCCceEEEEEeCCCcee-eEeCCC--CCCCCCCccccccccceeeEecCeEEEEEeCCCCCEEEEEEeeC
Q 039662 215 NGFCYWVVCRPDYSKAILSFSMSDEVF-EEMEGP--SVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMTG 291 (366)
Q Consensus 215 ~G~lywl~~~~~~~~~Il~fD~~~~~~-~~i~~P--~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~~ 291 (366)
+|...+.. ......|..+|+++.+. ..+... ...........+ ...-+|+..++... ....+.||-++
T Consensus 167 dg~~l~~~--~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~s~dg~~~~~~~~-~~~~i~v~d~~- 237 (300)
T TIGR03866 167 DGKELWVS--SEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGI-----KLTKDGKTAFVALG-PANRVAVVDAK- 237 (300)
T ss_pred CCCEEEEE--cCCCCEEEEEEcCcceeeeeeeecccccccccCCccce-----EECCCCCEEEEEcC-CCCeEEEEECC-
Confidence 55544444 22234688899988754 333321 111000011111 12335664333321 34567777554
Q ss_pred CeeeEEEEecCCCcceeeEEEeeCCeEEEEE--cCCeEEEEECCCCeE-EEEEEeC
Q 039662 292 GNWTKHSTFGPFIETYQPIGFWRKGEFFLES--SDKRVVLYDSTYQEM-RDIRITG 344 (366)
Q Consensus 292 ~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~--~~~~~~~yd~~~~~~-~~i~~~~ 344 (366)
+|.....+... .....+.+..+|+.++.. .++.+.+||+++++. +++.+.+
T Consensus 238 -~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 291 (300)
T TIGR03866 238 -TYEVLDYLLVG-QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR 291 (300)
T ss_pred -CCcEEEEEEeC-CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc
Confidence 34444333222 222345566777766553 378999999999874 6676543
No 99
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=31.18 E-value=41 Score=29.72 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.5
Q ss_pred ccCCcHHHHHHHHhcCC-hhhhhhheechhhhhhhcCChH
Q 039662 3 VKYLSDDMMIETLSRLP-VKSLMRFQCVCKSWYDLVKDPN 41 (366)
Q Consensus 3 ~~~LP~Dll~eIL~rLP-~~sl~r~~~VcK~W~~li~~~~ 41 (366)
..+||.+++.+||.||| -.||.-++.|--.-..++.+..
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~ 241 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERR 241 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHH
Confidence 57899999999999998 6788877777555455555433
No 100
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.92 E-value=3.7e+02 Score=25.09 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=38.0
Q ss_pred CCCEEEEEEee-CCeeeEEEEecCCCcceeeEEEeeCCeEEEEE-cCCeEEEEECCCCeEEE
Q 039662 280 FAHTFELWTMT-GGNWTKHSTFGPFIETYQPIGFWRKGEFFLES-SDKRVVLYDSTYQEMRD 339 (366)
Q Consensus 280 ~~~~~~IW~l~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~~~~~~~ 339 (366)
....|.||-+. + ..+.++.-.++..+-+.+..+|+.++.. +++.+-+||+++++-..
T Consensus 312 rDktIk~wdv~tg---~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 312 RDKTIKIWDVSTG---MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred ccceEEEEeccCC---eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 56789999877 5 2334444333445556677778876654 57889999999875443
No 101
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=30.71 E-value=5.4e+02 Score=25.44 Aligned_cols=111 Identities=11% Similarity=0.069 Sum_probs=66.0
Q ss_pred ceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceeeEecCeEEEEEeCCCCCEEEEEEeeC----CeeeEEEEecCC
Q 039662 228 SKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMTG----GNWTKHSTFGPF 303 (366)
Q Consensus 228 ~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~~----~~W~~~~~i~~~ 303 (366)
...|+.|++..++.+..---. ..++...- ...+.++.+++.......++.|..++ ..|.. .
T Consensus 79 ~g~v~~ys~~~g~it~~~st~---~h~~~v~~------~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~----~-- 143 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTD---KHYGNVNE------ILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE----Q-- 143 (541)
T ss_pred CccEEEEEecCCeEEEEEecC---CCCCccee------eecccccCceEecCCceeEEEEecccceeeeeecc----C--
Confidence 557999998888765431111 11111222 34466677776656677888888773 22221 1
Q ss_pred CcceeeEEEeeCCeEEEEEcCCeEEEEECCCCeEEEEEEeCcE--EEEEEeeec
Q 039662 304 IETYQPIGFWRKGEFFLESSDKRVVLYDSTYQEMRDIRITGLW--FTVHVLKES 355 (366)
Q Consensus 304 ~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~~~~~~~i~~~~~~--~~~~~y~~s 355 (366)
+....-+++.++|++++.- ...+-.||.+++++-. .+.|.. .+...|+.+
T Consensus 144 ~~~~~sl~is~D~~~l~~a-s~~ik~~~~~~kevv~-~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTA-SRQIKVLDIETKEVVI-TFTGHGSPVRTLSFTTL 195 (541)
T ss_pred CCccceEEEcCCCCEEEec-cceEEEEEccCceEEE-EecCCCcceEEEEEEEe
Confidence 2334567778888887663 6789999999987642 344443 455555554
No 102
>PRK05137 tolB translocation protein TolB; Provisional
Probab=30.61 E-value=4.8e+02 Score=24.85 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=89.8
Q ss_pred CeEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEeeecccCCCCCCcceEEEEEcCCCceeec
Q 039662 116 TLINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILTLWNDHRDSFHDFSHVAVYKFSTNSWRDL 195 (366)
Q Consensus 116 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~ 195 (366)
..++++|+.|++.+.+...+.. .....+.|..+ +++.... .+ ....+.+++..++.-+.+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~----------~~~~~~SPDG~--~la~~~~-----~~---g~~~Iy~~d~~~~~~~~L 285 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGM----------TFAPRFSPDGR--KVVMSLS-----QG---GNTDIYTMDLRSGTTTRL 285 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCc----------ccCcEECCCCC--EEEEEEe-----cC---CCceEEEEECCCCceEEc
Confidence 4699999999988777543321 12334455432 2322222 01 223555667777766666
Q ss_pred CCCccccceeecccceEEECce-EEEEEecCCCceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceeeEecCe-EE
Q 039662 196 EGFEMRYDYMVDRIFNVYLNGF-CYWVVCRPDYSKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLGTYDDC-LS 273 (366)
Q Consensus 196 ~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~~~~G~-L~ 273 (366)
...+. ........-+|. +++.. ...+...|..+|+++++.+.+...... ..... ..-+|+ |.
T Consensus 286 t~~~~-----~~~~~~~spDG~~i~f~s-~~~g~~~Iy~~d~~g~~~~~lt~~~~~---~~~~~-------~SpdG~~ia 349 (435)
T PRK05137 286 TDSPA-----IDTSPSYSPDGSQIVFES-DRSGSPQLYVMNADGSNPRRISFGGGR---YSTPV-------WSPRGDLIA 349 (435)
T ss_pred cCCCC-----ccCceeEcCCCCEEEEEE-CCCCCCeEEEEECCCCCeEEeecCCCc---ccCeE-------ECCCCCEEE
Confidence 31110 001112222454 44433 223345688889888777665322111 11111 223554 54
Q ss_pred EEEeCCCCCEEEEEEee-CCeeeEEEEecCCCcceeeEEEeeCCe-EEEEEc-C-----CeEEEEECCCCeEEEEE
Q 039662 274 LLYSDSFAHTFELWTMT-GGNWTKHSTFGPFIETYQPIGFWRKGE-FFLESS-D-----KRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 274 ~~~~~~~~~~~~IW~l~-~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~-~-----~~~~~yd~~~~~~~~i~ 341 (366)
+... ......||+++ +....+..+-. .....| .+..+|. |++... . ..++.+|++++..+.+.
T Consensus 350 ~~~~--~~~~~~i~~~d~~~~~~~~lt~~--~~~~~p-~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 350 FTKQ--GGGQFSIGVMKPDGSGERILTSG--FLVEGP-TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEc--CCCceEEEEEECCCCceEeccCC--CCCCCC-eECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 4443 23346777777 32222222111 122233 3455665 444433 1 36999999888777665
No 103
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=30.00 E-value=2.7e+02 Score=24.94 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=45.8
Q ss_pred eEecCeEEEEEeCCCCCEEEEEEee-CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEcCCeEEEEECCCCeE
Q 039662 266 GTYDDCLSLLYSDSFAHTFELWTMT-GGNWTKHSTFGPFIETYQPIGFWRKGEFFLESSDKRVVLYDSTYQEM 337 (366)
Q Consensus 266 ~~~~G~L~~~~~~~~~~~~~IW~l~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~~~~~ 337 (366)
+.-+|.||.... ...++-+|-|. ++. .+.++..+ ..+.++|.++.-.+....+..+-.||++++..
T Consensus 200 vSpDGslcasGg--kdg~~~LwdL~~~k~---lysl~a~~-~v~sl~fspnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 200 VSPDGSLCASGG--KDGEAMLWDLNEGKN---LYSLEAFD-IVNSLCFSPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred ECCCCCEEecCC--CCceEEEEEccCCce---eEeccCCC-eEeeEEecCCceeEeeccCCceEEEeccchhh
Confidence 444899987743 67899999998 433 66666653 34556677765555555577899999998854
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=29.64 E-value=2.4e+02 Score=27.14 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=36.8
Q ss_pred CCCEEEEEEeeCCeeeEEEEecCCCcceeeEEEeeCCe-EEEE-EcCCeEEEEECCCCeEEEEE
Q 039662 280 FAHTFELWTMTGGNWTKHSTFGPFIETYQPIGFWRKGE-FFLE-SSDKRVVLYDSTYQEMRDIR 341 (366)
Q Consensus 280 ~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~~~~~~~~yd~~~~~~~~i~ 341 (366)
....+.|...+|+.=.++..|.....-..-..+..+|. .++. .....++.||+++.++..+.
T Consensus 233 ~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 233 LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 45677777777522224444443221122334455665 5544 44677999999999998876
No 105
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=28.98 E-value=2e+02 Score=25.05 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=37.3
Q ss_pred eecceEEEeecCCeEEEEeCCCcceeec--CCCCCCCCCcccccceeeEEeecCCCCCeEEEE
Q 039662 104 PYDGIFCLLKSHTLINLWNVSLNEYRVI--PECRPRLPLYTKTHYANVALGLDPVTKDFKLVL 164 (366)
Q Consensus 104 s~~GLl~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~ 164 (366)
..+|.|.-.....++|..||.|+.-..+ .+.... .....++|-|+|..+.-+||.
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~a------l~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLTVA------LSGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeeccccccc------ccCceEEEecCcccCcEEEEc
Confidence 4567776666666799999999998777 222221 112257788889888766664
No 106
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=28.53 E-value=5.5e+02 Score=24.82 Aligned_cols=102 Identities=8% Similarity=0.055 Sum_probs=56.7
Q ss_pred ceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceeeEecCeEEEEEeCCCCCEEEEEEeeCCeeeEEEEecCCCcce
Q 039662 228 SKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSFAHTFELWTMTGGNWTKHSTFGPFIETY 307 (366)
Q Consensus 228 ~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~ 307 (366)
..++.+||+.+.+...+..|...+.. .+-.. -+.-+|...++.. ....|.+--.+...|.-...|. +..
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~-~~e~F-----eVShd~~fia~~G--~~G~I~lLhakT~eli~s~Kie---G~v 347 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEK-SMERF-----EVSHDSNFIAIAG--NNGHIHLLHAKTKELITSFKIE---GVV 347 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccc-hhhee-----EecCCCCeEEEcc--cCceEEeehhhhhhhhheeeec---cEE
Confidence 56899999999999999888765411 11111 0111233111111 1222222222235565555554 233
Q ss_pred eeEEEeeCCeEEEE-EcCCeEEEEECCCCeEEEE
Q 039662 308 QPIGFWRKGEFFLE-SSDKRVVLYDSTYQEMRDI 340 (366)
Q Consensus 308 ~~~~~~~~g~i~~~-~~~~~~~~yd~~~~~~~~i 340 (366)
.-+.+..+|+.++. ...+.|+.+|++++.....
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 44556667775554 4578999999999866543
No 107
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=27.59 E-value=4.1e+02 Score=23.11 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=68.3
Q ss_pred EEEEEcCC-CceeecCCCccccceeecccceEE--ECceEEEEEecCCCceEEEEEeCC-CceeeEe---CCCCCCCCCC
Q 039662 182 VAVYKFST-NSWRDLEGFEMRYDYMVDRIFNVY--LNGFCYWVVCRPDYSKAILSFSMS-DEVFEEM---EGPSVPQSTT 254 (366)
Q Consensus 182 ~~vyss~~-~~W~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~Il~fD~~-~~~~~~i---~~P~~~~~~~ 254 (366)
+.+||... ..|+...... .... .....+. -+|.+|.+..........++.-.+ ..+|+.. .+|...
T Consensus 136 ~~~~S~D~G~tW~~~~~~~-~~~~--~~e~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~---- 208 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGSPIP-DGQG--ECEPSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPN---- 208 (275)
T ss_dssp EEEEESSTTSSEEEEEECE-CSEE--EEEEEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCC----
T ss_pred EEEEeCCCCceeecccccc-ccCC--cceeEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCccc----
Confidence 33345443 4698874221 1111 1122332 478999888543123445555555 3468753 444432
Q ss_pred ccccccccceeeE-ecCeEEEEEeC-CCCCEEEEEEee--CCeeeEEEEecCCC---cceeeEEEeeCCeEEE
Q 039662 255 YYQSVKTPWMLGT-YDDCLSLLYSD-SFAHTFELWTMT--GGNWTKHSTFGPFI---ETYQPIGFWRKGEFFL 320 (366)
Q Consensus 255 ~~~~l~~~~~~~~-~~G~L~~~~~~-~~~~~~~IW~l~--~~~W~~~~~i~~~~---~~~~~~~~~~~g~i~~ 320 (366)
....+ +. -+|++.++... .....+.|++-. |..|.+...|.... .-+.-+...++|+|.+
T Consensus 209 ~~~~~------~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 209 SSISL------VRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEE------EECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CCceE------EEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 11222 44 36788888763 246788888876 48999988887543 2344444556677653
No 108
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=27.37 E-value=1.6e+02 Score=22.04 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=27.3
Q ss_pred eEEEEeCCCcc-eeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEE
Q 039662 117 LINLWNVSLNE-YRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLIL 166 (366)
Q Consensus 117 ~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 166 (366)
.++..+|-+++ |... . ....+.+..|...+.|.|....
T Consensus 17 ~v~~~~p~~~~~W~~~---~---------~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 17 QVYQADPDTKRQWSPV---K---------GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEETTTSESEEES---S---------SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEcCCCCcEeeC---C---------eEEEEEEEEECCCCEEEEEEEE
Confidence 38889998888 8865 1 1134667778887888888765
No 109
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=27.03 E-value=2e+02 Score=21.34 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=28.7
Q ss_pred eEEEEeCCCcceeecCCCCCCCCCcccccceeeEEeecCCCCCeEEEEEEe
Q 039662 117 LINLWNVSLNEYRVIPECRPRLPLYTKTHYANVALGLDPVTKDFKLVLILT 167 (366)
Q Consensus 117 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~ 167 (366)
+++..+|.+++|...- . ....+.+..|+..+.|.|+....
T Consensus 10 ~v~~~~~~~~~W~~~~--~---------~~g~v~~~~d~~~~~y~i~~~~~ 49 (104)
T cd00837 10 QVYTADPSTGKWVPAS--G---------GTGAVSLVKDSTRNTYRIRGVDI 49 (104)
T ss_pred EEEEECCCCCceEECC--C---------CeEEEEEEEECCCCEEEEEEEec
Confidence 4888899999998532 1 12347788888888888887654
No 110
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.72 E-value=3e+02 Score=24.78 Aligned_cols=66 Identities=9% Similarity=0.206 Sum_probs=45.0
Q ss_pred CcceEEEEEcCCCceeecCC-Cccc-cceeecccceEEECceEEEEEecCCCceEEEEEeCCCceeeEeCC
Q 039662 178 DFSHVAVYKFSTNSWRDLEG-FEMR-YDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDEVFEEMEG 246 (366)
Q Consensus 178 ~~~~~~vyss~~~~W~~~~~-~~~~-~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~~~~~i~~ 246 (366)
.+..+.+|+..+.+|..... +.-. ....+....-+++.|.+-.- ......+..||+++.+|..+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~---~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLN---GTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEEC---CCCceeEEEEecCCCeeeecCC
Confidence 45688999999999999852 1111 11123346677778876653 2246689999999999987754
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.82 E-value=6.3e+02 Score=24.27 Aligned_cols=120 Identities=8% Similarity=0.203 Sum_probs=65.5
Q ss_pred eEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCCceEEEEEeCCCc-eeeEeCCCCCCCCCCccccc
Q 039662 181 HVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDYSKAILSFSMSDE-VFEEMEGPSVPQSTTYYQSV 259 (366)
Q Consensus 181 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~~-~~~~i~~P~~~~~~~~~~~l 259 (366)
.+.||++.+.. .++.+|... ..-..+.+.-.=||++...+ ...|..+|+... .|..+++|...+. ..+
T Consensus 370 ~vkiwdlks~~--~~a~Fpght----~~vk~i~FsENGY~Lat~ad-d~~V~lwDLRKl~n~kt~~l~~~~~v----~s~ 438 (506)
T KOG0289|consen 370 VVKIWDLKSQT--NVAKFPGHT----GPVKAISFSENGYWLATAAD-DGSVKLWDLRKLKNFKTIQLDEKKEV----NSL 438 (506)
T ss_pred eEEEEEcCCcc--ccccCCCCC----CceeEEEeccCceEEEEEec-CCeEEEEEehhhcccceeeccccccc----eeE
Confidence 56677666554 333333322 23455666666699985433 345999999975 4677777765321 111
Q ss_pred cccceeeEecCeEEEEEeCCCCCEEEEEEee--CCeeeEEEEecCCCcceeeEEEeeCCeEEE
Q 039662 260 KTPWMLGTYDDCLSLLYSDSFAHTFELWTMT--GGNWTKHSTFGPFIETYQPIGFWRKGEFFL 320 (366)
Q Consensus 260 ~~~~~~~~~~G~L~~~~~~~~~~~~~IW~l~--~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~ 320 (366)
....-|+...+. ...+.|..-+ ..+|.+........+...-+.+++...++.
T Consensus 439 -----~fD~SGt~L~~~----g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 439 -----SFDQSGTYLGIA----GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred -----EEcCCCCeEEee----cceeEEEEEecccccceeeehhhhcccccceeeecccceEEe
Confidence 022234433333 4677777777 389999877664323323333433333333
No 112
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.27 E-value=5.4e+02 Score=24.55 Aligned_cols=51 Identities=24% Similarity=0.528 Sum_probs=26.5
Q ss_pred CCCEEEEEEeeC---CeeeEEEEecCCCcceeeEEEeeCCe-EEEEEcCCeEEEEECCCC
Q 039662 280 FAHTFELWTMTG---GNWTKHSTFGPFIETYQPIGFWRKGE-FFLESSDKRVVLYDSTYQ 335 (366)
Q Consensus 280 ~~~~~~IW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~~~ 335 (366)
....+..|-++| +.|.-+.. .....++++.+|+ ++....+.++..||.+++
T Consensus 332 ~dr~i~~wdlDgn~~~~W~gvr~-----~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 332 PDRTIIMWDLDGNILGNWEGVRD-----PKVHDLAITYDGKYVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred CCCcEEEecCCcchhhccccccc-----ceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence 457888999983 78876542 1112233334443 333333455555555443
No 113
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=24.18 E-value=2.5e+02 Score=27.35 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred EEEeeCCeEEEEEc-CCeEEEEECCCCeEEEEEEeCcE--EEEEEeeec-cc----ccCCCCcCC
Q 039662 310 IGFWRKGEFFLESS-DKRVVLYDSTYQEMRDIRITGLW--FTVHVLKES-LI----RLKEKDTQQ 366 (366)
Q Consensus 310 ~~~~~~g~i~~~~~-~~~~~~yd~~~~~~~~i~~~~~~--~~~~~y~~s-lv----~~~~~~~~~ 366 (366)
+.+.++|.++.... .++++.||++...--.--++... .....|++| .| +++.|+.||
T Consensus 256 vaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tvltkssln~G~~~~ 320 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTVLTKSSLNSGDNQQ 320 (673)
T ss_pred eeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecceeeeccccccCccCC
No 114
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.10 E-value=3e+02 Score=26.29 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=37.6
Q ss_pred cCeEEEEEeCCCCCEEEEEEeeCCeeeEEEEecCCCcceeeEEEeeCCeEEEE-EcCCeEEEEECCC
Q 039662 269 DDCLSLLYSDSFAHTFELWTMTGGNWTKHSTFGPFIETYQPIGFWRKGEFFLE-SSDKRVVLYDSTY 334 (366)
Q Consensus 269 ~G~L~~~~~~~~~~~~~IW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~~ 334 (366)
+|-|..... ....+.||-+++.. ..-+++....-..-+.|.+||-.+.. .+++.+..||+++
T Consensus 358 DgLifgtgt--~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 358 DGLIFGTGT--PDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred CceEEeccC--CCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence 444444443 56799999998322 33334433333455667788765544 4467799999876
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=24.00 E-value=5.6e+02 Score=23.37 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=39.0
Q ss_pred CCCEEEEEEee-CCeeeEEEEecCCCcceeeEEEeeCC-eEEEEEcCCeEEEEECCCCeEEEEEEeCcE
Q 039662 280 FAHTFELWTMT-GGNWTKHSTFGPFIETYQPIGFWRKG-EFFLESSDKRVVLYDSTYQEMRDIRITGLW 346 (366)
Q Consensus 280 ~~~~~~IW~l~-~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~yd~~~~~~~~i~~~~~~ 346 (366)
=..++.||.++ .+.=+.+-...+...+ .-++..++| +++....++.+-.||+.++....|..+..+
T Consensus 48 WD~tVR~wevq~~g~~~~ka~~~~~~Pv-L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~p 115 (347)
T KOG0647|consen 48 WDGTVRIWEVQNSGQLVPKAQQSHDGPV-LDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAP 115 (347)
T ss_pred cCCceEEEEEecCCcccchhhhccCCCe-EEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccc
Confidence 45789999998 2211111111111111 123333445 466666799999999999999988866443
No 116
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=23.72 E-value=6.7e+02 Score=24.18 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=39.5
Q ss_pred cceEEEEEcCCCceeecCCCccccceeecccceEEECceEEEEEecCCC-ceEEEEEeCCCcee
Q 039662 179 FSHVAVYKFSTNSWRDLEGFEMRYDYMVDRIFNVYLNGFCYWVVCRPDY-SKAILSFSMSDEVF 241 (366)
Q Consensus 179 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~Il~fD~~~~~~ 241 (366)
..++.||+..+++=..+.++|.. ...-....+.+-||..|.-....++ ...|..+|+.+.+.
T Consensus 366 ~~~laI~d~~~kt~t~V~glP~~-~is~~~~~~~ve~G~aYi~Vtt~~g~~~~IY~iDp~TatA 428 (435)
T PF14298_consen 366 AKKLAIFDVSNKTFTWVTGLPAD-LISGFGNAPYVENGKAYIPVTTEDGSDPYIYKIDPATATA 428 (435)
T ss_pred cceEEEEEccCceeEEeccCChh-hccccccceEeeCCEEEEEEeecCCCceeEEEEcCccccc
Confidence 45778888887766666555543 1101123455568888887754444 47899999998765
No 117
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=23.19 E-value=20 Score=32.57 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=32.9
Q ss_pred CccCCcHHHHHHHHhcCChhhhhhheechhhhhhhcCC
Q 039662 2 TVKYLSDDMMIETLSRLPVKSLMRFQCVCKSWYDLVKD 39 (366)
Q Consensus 2 a~~~LP~Dll~eIL~rLP~~sl~r~~~VcK~W~~li~~ 39 (366)
....+|++++..|+.++-.+.+.++++|+|+-..+-+.
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~ 44 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSH 44 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHhhhhhc
Confidence 45789999999999999999999999999987765543
No 118
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=22.47 E-value=1.7e+02 Score=27.61 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred ceEEEEEeCCCceeeEeCCCCCCCCCCccccccccceeeEecCeEEEEEeCCCCCEE--EEEEee--CCeeeEEEEecCC
Q 039662 228 SKAILSFSMSDEVFEEMEGPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSFAHTF--ELWTMT--GGNWTKHSTFGPF 303 (366)
Q Consensus 228 ~~~Il~fD~~~~~~~~i~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~~~~~--~IW~l~--~~~W~~~~~i~~~ 303 (366)
.+.|+..|+.+++...+ -....-.+.... .-.+..|.+.|....-..+ .||+++ |....++++-...
T Consensus 167 ~~~i~~idl~tG~~~~v---~~~~~wlgH~~f------sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~ 237 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVV---FEDTDWLGHVQF------SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEG 237 (386)
T ss_dssp -EEEEEEETTT--EEEE---EEESS-EEEEEE------ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TT
T ss_pred CceEEEEECCCCceeEE---EecCccccCccc------CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCC
Q ss_pred CcceeeEEEeeCCeEEEEEc-----CCeEEEEECCCCeEEEE
Q 039662 304 IETYQPIGFWRKGEFFLESS-----DKRVVLYDSTYQEMRDI 340 (366)
Q Consensus 304 ~~~~~~~~~~~~g~i~~~~~-----~~~~~~yd~~~~~~~~i 340 (366)
....+......+..|++... +.-+..||++|.+-+.+
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
No 119
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.79 E-value=45 Score=26.66 Aligned_cols=28 Identities=29% Similarity=0.618 Sum_probs=23.6
Q ss_pred hcCChh--hhhhheechhhhhhhcCChHHH
Q 039662 16 SRLPVK--SLMRFQCVCKSWYDLVKDPNFI 43 (366)
Q Consensus 16 ~rLP~~--sl~r~~~VcK~W~~li~~~~F~ 43 (366)
+|+.+| |+.++.+||++-+++.+...|-
T Consensus 144 srvsikessv~klgsvcrrvyrifsha~fh 173 (223)
T KOG1852|consen 144 SRVSIKESSVAKLGSVCRRVYRIFSHAYFH 173 (223)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566666 6889999999999999988884
No 120
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=21.63 E-value=1e+02 Score=29.62 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCeEEEEECCCCeEEEEEEe
Q 039662 314 RKGEFFLESSDKRVVLYDSTYQEMRDIRIT 343 (366)
Q Consensus 314 ~~g~i~~~~~~~~~~~yd~~~~~~~~i~~~ 343 (366)
.+|+-++.+..+.++.||++|..++++.+.
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecC
Confidence 357766666789999999999999998864
No 121
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=20.21 E-value=2.5e+02 Score=29.00 Aligned_cols=60 Identities=20% Similarity=0.379 Sum_probs=41.6
Q ss_pred CCCEEEEEEee--------CCeeeEEEEecCCCcceeeEEEeeCCeEEEEEcCCeEEEEECCC-CeEEE
Q 039662 280 FAHTFELWTMT--------GGNWTKHSTFGPFIETYQPIGFWRKGEFFLESSDKRVVLYDSTY-QEMRD 339 (366)
Q Consensus 280 ~~~~~~IW~l~--------~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~~-~~~~~ 339 (366)
....+.||.+. +..|.....=.....-....++.++|.++.+..++.+..||..+ .+++.
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLC 545 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhc
Confidence 56899999995 26798766333211112334556889999888899999999998 45444
No 122
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.02 E-value=7.3e+02 Score=23.23 Aligned_cols=84 Identities=10% Similarity=0.118 Sum_probs=53.0
Q ss_pred cceEEECceEEEEEecCCCceEEEEEeCCC--ceeeEe-CCCCCCCCCCccccccccceeeEecCeEEEEEeCCCC----
Q 039662 209 IFNVYLNGFCYWVVCRPDYSKAILSFSMSD--EVFEEM-EGPSVPQSTTYYQSVKTPWMLGTYDDCLSLLYSDSFA---- 281 (366)
Q Consensus 209 ~~~v~~~G~lywl~~~~~~~~~Il~fD~~~--~~~~~i-~~P~~~~~~~~~~~l~~~~~~~~~~G~L~~~~~~~~~---- 281 (366)
..+...+..+|.-..... ..-..+|++. ..|+.+ .+|...... ..- +.++|+|++.......
T Consensus 40 G~Ga~ig~~~YVGLGs~G--~afy~ldL~~~~k~W~~~a~FpG~~rnq---a~~------a~~~~kLyvFgG~Gk~~~~~ 108 (381)
T COG3055 40 GAGALIGDTVYVGLGSAG--TAFYVLDLKKPGKGWTKIADFPGGARNQ---AVA------AVIGGKLYVFGGYGKSVSSS 108 (381)
T ss_pred cccceecceEEEEeccCC--ccceehhhhcCCCCceEcccCCCccccc---chh------eeeCCeEEEeeccccCCCCC
Confidence 466677778888774322 3345555554 578887 567654322 222 7889999998432111
Q ss_pred --CEEEEEEee-C-CeeeEEEEecCC
Q 039662 282 --HTFELWTMT-G-GNWTKHSTFGPF 303 (366)
Q Consensus 282 --~~~~IW~l~-~-~~W~~~~~i~~~ 303 (366)
..-++.+.+ . .+|+++.+..|.
T Consensus 109 ~~~~nd~Y~y~p~~nsW~kl~t~sP~ 134 (381)
T COG3055 109 PQVFNDAYRYDPSTNSWHKLDTRSPT 134 (381)
T ss_pred ceEeeeeEEecCCCChhheecccccc
Confidence 223666777 3 899999998874
Done!