Query 039665
Match_columns 275
No_of_seqs 394 out of 1978
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 11:57:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0648 Predicted NUDIX hydrol 100.0 3.2E-46 6.9E-51 324.0 14.0 259 14-272 5-266 (295)
2 cd04670 Nudix_Hydrolase_12 Mem 99.9 3.5E-23 7.6E-28 163.0 14.5 126 122-252 1-126 (127)
3 PRK00714 RNA pyrophosphohydrol 99.9 8.6E-21 1.9E-25 155.0 15.5 129 121-253 6-151 (156)
4 cd04679 Nudix_Hydrolase_20 Mem 99.9 4.2E-21 9E-26 150.7 13.2 112 123-237 2-115 (125)
5 cd03671 Ap4A_hydrolase_plant_l 99.9 5.7E-21 1.2E-25 154.4 14.2 125 122-250 2-144 (147)
6 cd03430 GDPMH GDP-mannose glyc 99.9 1.8E-20 3.9E-25 151.1 15.7 115 121-239 10-134 (144)
7 cd03424 ADPRase_NUDT5 ADP-ribo 99.9 9.7E-21 2.1E-25 150.9 13.5 118 123-241 2-119 (137)
8 PRK15434 GDP-mannose mannosyl 99.9 3E-20 6.4E-25 151.9 16.5 114 122-239 16-139 (159)
9 PRK11762 nudE adenosine nucleo 99.9 1.4E-20 3E-25 157.9 14.1 154 64-242 7-164 (185)
10 PRK09438 nudB dihydroneopterin 99.8 1.3E-20 2.7E-25 152.4 13.1 125 122-256 6-145 (148)
11 cd04680 Nudix_Hydrolase_21 Mem 99.8 2.1E-20 4.5E-25 145.2 12.3 109 125-240 2-111 (120)
12 cd04700 DR1025_like DR1025 fro 99.8 6.3E-20 1.4E-24 147.5 15.2 118 121-241 11-129 (142)
13 PF00293 NUDIX: NUDIX domain; 99.8 3.6E-20 7.8E-25 146.0 13.2 120 123-242 2-124 (134)
14 cd04678 Nudix_Hydrolase_19 Mem 99.8 6.8E-20 1.5E-24 144.5 14.4 113 123-237 2-117 (129)
15 cd03673 Ap6A_hydrolase Diadeno 99.8 5.9E-20 1.3E-24 144.7 13.8 109 124-239 2-118 (131)
16 cd04682 Nudix_Hydrolase_23 Mem 99.8 4.8E-20 1E-24 144.2 12.9 112 127-239 4-116 (122)
17 cd04684 Nudix_Hydrolase_25 Con 99.8 9.3E-20 2E-24 143.0 14.0 114 125-241 2-121 (128)
18 cd04673 Nudix_Hydrolase_15 Mem 99.8 1.3E-19 2.8E-24 141.1 14.2 113 124-242 1-119 (122)
19 cd04669 Nudix_Hydrolase_11 Mem 99.8 1.8E-19 3.9E-24 140.9 14.5 109 126-241 3-118 (121)
20 PLN02325 nudix hydrolase 99.8 9.3E-20 2E-24 146.9 13.2 116 119-237 5-125 (144)
21 cd03675 Nudix_Hydrolase_2 Cont 99.8 3.1E-19 6.7E-24 141.6 15.9 127 125-256 2-130 (134)
22 cd04696 Nudix_Hydrolase_37 Mem 99.8 1.3E-19 2.8E-24 142.3 13.6 112 124-242 3-119 (125)
23 cd03674 Nudix_Hydrolase_1 Memb 99.8 1.9E-19 4.2E-24 143.9 14.8 120 124-253 3-136 (138)
24 cd03672 Dcp2p mRNA decapping e 99.8 6.3E-20 1.4E-24 148.0 12.0 127 125-257 3-138 (145)
25 cd04683 Nudix_Hydrolase_24 Mem 99.8 1.9E-19 4.2E-24 140.1 13.9 112 125-239 2-116 (120)
26 cd04697 Nudix_Hydrolase_38 Mem 99.8 1.1E-19 2.4E-24 143.0 12.6 113 125-240 2-115 (126)
27 cd03426 CoAse Coenzyme A pyrop 99.8 1.4E-19 3E-24 148.0 13.1 114 125-239 4-120 (157)
28 cd04681 Nudix_Hydrolase_22 Mem 99.8 1.8E-19 3.8E-24 142.2 13.1 107 125-235 3-113 (130)
29 PRK15472 nucleoside triphospha 99.8 2.7E-19 5.9E-24 143.4 14.0 117 126-243 6-131 (141)
30 cd03427 MTH1 MutT homolog-1 (M 99.8 4.4E-19 9.5E-24 141.2 14.4 120 126-254 4-125 (137)
31 PRK10729 nudF ADP-ribose pyrop 99.8 2E-19 4.4E-24 152.5 13.1 118 125-242 51-176 (202)
32 cd04691 Nudix_Hydrolase_32 Mem 99.8 3.5E-19 7.6E-24 138.5 13.3 107 126-238 3-109 (117)
33 cd04677 Nudix_Hydrolase_18 Mem 99.8 2.9E-19 6.3E-24 141.2 12.2 112 122-240 6-125 (132)
34 cd04687 Nudix_Hydrolase_28 Mem 99.8 8.3E-19 1.8E-23 138.2 14.6 114 124-241 2-125 (128)
35 cd04671 Nudix_Hydrolase_13 Mem 99.8 7.3E-19 1.6E-23 138.0 14.1 105 126-235 3-108 (123)
36 cd04699 Nudix_Hydrolase_39 Mem 99.8 3.5E-19 7.6E-24 139.9 12.1 115 124-241 2-118 (129)
37 PRK10546 pyrimidine (deoxy)nuc 99.8 1.8E-18 3.9E-23 137.4 16.2 123 126-256 6-128 (135)
38 cd03429 NADH_pyrophosphatase N 99.8 7.6E-19 1.6E-23 139.3 13.7 106 125-237 2-107 (131)
39 cd04676 Nudix_Hydrolase_17 Mem 99.8 8.6E-19 1.9E-23 137.3 13.7 113 123-242 2-122 (129)
40 cd04672 Nudix_Hydrolase_14 Mem 99.8 1.1E-18 2.4E-23 136.6 14.1 111 123-242 2-117 (123)
41 PRK15393 NUDIX hydrolase YfcD; 99.8 1.7E-18 3.7E-23 144.6 14.6 111 125-238 39-150 (180)
42 cd04693 Nudix_Hydrolase_34 Mem 99.8 7.4E-19 1.6E-23 138.3 11.5 112 125-240 2-116 (127)
43 PRK10776 nucleoside triphospha 99.8 4.4E-18 9.6E-23 133.4 15.8 112 126-242 7-118 (129)
44 PRK00241 nudC NADH pyrophospha 99.8 2.3E-18 5E-23 151.0 14.8 125 121-255 130-254 (256)
45 cd04690 Nudix_Hydrolase_31 Mem 99.8 2.1E-18 4.5E-23 133.7 12.9 106 126-240 3-113 (118)
46 cd04692 Nudix_Hydrolase_33 Mem 99.8 1.5E-18 3.2E-23 139.7 12.2 114 125-238 4-128 (144)
47 cd04688 Nudix_Hydrolase_29 Mem 99.8 4.1E-18 8.9E-23 133.8 14.4 110 126-241 4-122 (126)
48 cd04689 Nudix_Hydrolase_30 Mem 99.8 3.2E-18 7E-23 134.2 13.8 108 124-237 2-114 (125)
49 cd04664 Nudix_Hydrolase_7 Memb 99.8 2.3E-18 5E-23 135.8 12.5 112 125-241 3-122 (129)
50 TIGR00052 nudix-type nucleosid 99.8 1.7E-18 3.8E-23 145.0 12.4 119 124-242 45-170 (185)
51 cd04511 Nudix_Hydrolase_4 Memb 99.8 5.2E-18 1.1E-22 134.2 14.4 107 121-235 11-117 (130)
52 cd03428 Ap4A_hydrolase_human_l 99.8 2.1E-18 4.7E-23 135.9 12.1 118 125-253 4-128 (130)
53 COG1051 ADP-ribose pyrophospha 99.8 3.5E-18 7.5E-23 137.8 13.3 116 121-240 8-125 (145)
54 cd04686 Nudix_Hydrolase_27 Mem 99.8 4.4E-18 9.6E-23 134.9 13.0 107 125-237 2-119 (131)
55 cd04694 Nudix_Hydrolase_35 Mem 99.8 5E-18 1.1E-22 136.6 13.3 114 124-237 2-131 (143)
56 TIGR00586 mutt mutator mutT pr 99.8 1.6E-17 3.5E-22 130.3 15.9 114 125-243 6-119 (128)
57 cd03425 MutT_pyrophosphohydrol 99.8 1E-17 2.2E-22 130.0 14.4 113 126-243 4-116 (124)
58 cd04695 Nudix_Hydrolase_36 Mem 99.8 4.9E-18 1.1E-22 134.5 12.4 108 132-244 11-121 (131)
59 PRK03759 isopentenyl-diphospha 99.8 4.9E-18 1.1E-22 142.4 12.8 116 124-242 35-157 (184)
60 cd04666 Nudix_Hydrolase_9 Memb 99.8 9.8E-18 2.1E-22 131.3 13.5 107 126-239 3-117 (122)
61 PRK15009 GDP-mannose pyrophosp 99.8 8.4E-18 1.8E-22 141.4 13.9 118 124-242 46-171 (191)
62 cd02885 IPP_Isomerase Isopente 99.8 4.9E-18 1.1E-22 139.9 12.0 116 123-241 30-152 (165)
63 cd04667 Nudix_Hydrolase_10 Mem 99.8 1.1E-17 2.4E-22 128.8 12.8 104 126-242 3-106 (112)
64 PRK10707 putative NUDIX hydrol 99.7 8.2E-17 1.8E-21 135.3 14.4 116 123-239 30-148 (190)
65 cd04685 Nudix_Hydrolase_26 Mem 99.7 7.6E-17 1.7E-21 128.2 12.7 113 125-237 2-123 (133)
66 TIGR02150 IPP_isom_1 isopenten 99.7 7.8E-17 1.7E-21 131.8 12.2 115 121-241 26-146 (158)
67 PRK05379 bifunctional nicotina 99.7 1.7E-16 3.8E-21 144.9 14.6 114 121-237 201-322 (340)
68 cd02883 Nudix_Hydrolase Nudix 99.7 2.9E-16 6.2E-21 121.0 13.6 113 125-241 2-116 (123)
69 PLN03143 nudix hydrolase; Prov 99.7 1.5E-15 3.2E-20 134.6 16.9 113 125-238 130-266 (291)
70 cd04661 MRP_L46 Mitochondrial 99.7 3E-16 6.5E-21 124.6 10.6 98 134-238 12-121 (132)
71 cd03676 Nudix_hydrolase_3 Memb 99.7 3.4E-16 7.4E-21 130.7 11.0 112 128-240 39-161 (180)
72 TIGR02705 nudix_YtkD nucleosid 99.7 1.2E-15 2.6E-20 123.7 13.8 123 123-257 24-150 (156)
73 PRK08999 hypothetical protein; 99.7 3.4E-15 7.4E-20 135.0 15.5 113 126-243 8-120 (312)
74 cd04665 Nudix_Hydrolase_8 Memb 99.6 6.4E-15 1.4E-19 114.6 12.8 100 126-234 3-102 (118)
75 cd04662 Nudix_Hydrolase_5 Memb 99.6 8.5E-15 1.8E-19 114.4 13.3 105 125-231 2-126 (126)
76 cd04674 Nudix_Hydrolase_16 Mem 99.6 1.2E-14 2.6E-19 112.9 13.5 56 126-184 7-62 (118)
77 PLN02709 nudix hydrolase 99.6 2E-14 4.3E-19 122.5 13.1 104 135-238 51-156 (222)
78 COG2816 NPY1 NTP pyrophosphohy 99.6 3.4E-15 7.3E-20 129.9 8.1 129 118-254 139-270 (279)
79 PLN02552 isopentenyl-diphospha 99.6 2.6E-14 5.5E-19 124.3 13.5 136 117-254 51-224 (247)
80 cd04663 Nudix_Hydrolase_6 Memb 99.5 1E-13 2.2E-18 108.7 11.7 106 126-237 3-116 (126)
81 KOG3084 NADH pyrophosphatase I 99.5 4.3E-15 9.4E-20 129.7 2.1 110 122-236 186-297 (345)
82 PLN02791 Nudix hydrolase homol 99.5 3.8E-13 8.3E-18 132.6 12.4 116 121-237 31-158 (770)
83 cd03670 ADPRase_NUDT9 ADP-ribo 99.4 1.9E-12 4.1E-17 108.0 12.8 52 126-182 37-91 (186)
84 KOG2839 Diadenosine and diphos 99.4 1.2E-12 2.6E-17 102.6 8.8 128 122-256 8-141 (145)
85 COG0494 MutT NTP pyrophosphohy 99.4 6.6E-12 1.4E-16 99.2 13.4 112 126-241 14-138 (161)
86 KOG3041 Nucleoside diphosphate 99.3 2.4E-11 5.3E-16 99.6 12.2 101 134-237 87-194 (225)
87 cd03431 DNA_Glycosylase_C DNA 99.3 7.7E-11 1.7E-15 90.7 13.0 104 128-242 7-110 (118)
88 KOG3069 Peroxisomal NUDIX hydr 99.1 3.4E-10 7.3E-15 95.6 9.2 116 125-240 45-166 (246)
89 COG1443 Idi Isopentenyldiphosp 99.1 6.4E-10 1.4E-14 89.9 8.9 115 125-242 35-158 (185)
90 PF14815 NUDIX_4: NUDIX domain 99.0 2.6E-09 5.6E-14 82.4 8.9 107 128-242 2-108 (114)
91 PLN02839 nudix hydrolase 98.8 3.9E-07 8.5E-12 82.8 16.8 173 50-238 148-328 (372)
92 COG4119 Predicted NTP pyrophos 98.8 1E-07 2.2E-12 73.1 10.4 125 125-254 5-152 (161)
93 KOG0142 Isopentenyl pyrophosph 98.2 4.3E-06 9.3E-11 69.2 6.7 131 121-253 51-202 (225)
94 COG4112 Predicted phosphoester 97.9 0.00019 4.1E-09 57.6 10.2 108 128-236 66-186 (203)
95 PRK10880 adenine DNA glycosyla 97.7 0.00037 7.9E-09 64.0 10.7 104 126-242 233-336 (350)
96 KOG2937 Decapping enzyme compl 97.7 7.9E-06 1.7E-10 72.6 -0.3 103 125-235 84-190 (348)
97 KOG4195 Transient receptor pot 97.5 9E-05 2E-09 62.3 3.8 39 136-179 140-178 (275)
98 KOG4432 Uncharacterized NUDIX 97.4 0.00063 1.4E-08 59.8 7.6 115 125-239 231-378 (405)
99 KOG4432 Uncharacterized NUDIX 97.3 0.0004 8.7E-09 61.0 5.6 87 124-210 27-140 (405)
100 PRK13910 DNA glycosylase MutY; 96.3 0.038 8.1E-07 49.5 10.1 91 128-253 191-281 (289)
101 PF13869 NUDIX_2: Nucleotide h 94.7 0.13 2.7E-06 43.0 6.9 41 135-181 58-98 (188)
102 COG1194 MutY A/G-specific DNA 94.7 0.084 1.8E-06 48.0 6.3 98 123-242 235-332 (342)
103 KOG4313 Thiamine pyrophosphoki 94.4 0.24 5.3E-06 42.8 8.0 111 125-236 135-257 (306)
104 KOG1689 mRNA cleavage factor I 94.3 0.12 2.6E-06 42.0 5.7 46 128-179 75-122 (221)
105 KOG4548 Mitochondrial ribosoma 93.3 0.42 9.1E-06 41.5 7.6 98 136-239 140-249 (263)
106 TIGR01084 mutY A/G-specific ad 92.4 0.38 8.3E-06 42.8 6.4 32 126-158 230-261 (275)
107 PF14443 DBC1: DBC1 72.1 18 0.00039 28.2 6.4 34 150-183 23-59 (126)
108 KOG2457 A/G-specific adenine D 66.6 1.4 3E-05 40.7 -0.8 129 135-271 387-523 (555)
109 PF03487 IL13: Interleukin-13; 63.0 7.4 0.00016 23.8 2.1 25 154-178 12-36 (43)
110 PF12860 PAS_7: PAS fold 58.0 6.9 0.00015 29.2 1.8 41 126-171 6-46 (115)
111 COG4111 Uncharacterized conser 50.6 57 0.0012 28.7 6.3 51 132-191 34-85 (322)
112 KOG2937 Decapping enzyme compl 49.6 4.1 8.9E-05 36.9 -0.8 69 111-183 226-296 (348)
113 cd09232 Snurportin-1_C C-termi 38.8 14 0.0003 30.9 0.8 68 102-170 5-78 (186)
114 PRK13717 conjugal transfer pro 38.5 53 0.0012 25.6 3.9 32 51-92 77-108 (128)
115 TIGR02744 TrbI_Ftype type-F co 32.4 78 0.0017 24.2 3.9 32 51-92 64-95 (112)
116 PF07026 DUF1317: Protein of u 28.4 1.2E+02 0.0025 20.4 3.6 14 151-164 22-35 (60)
117 COG4506 Uncharacterized protei 24.7 2.6E+02 0.0056 22.2 5.6 60 90-161 30-97 (143)
118 PRK00446 cyaY frataxin-like pr 22.8 1.8E+02 0.0038 21.9 4.3 51 128-183 47-103 (105)
119 PF09505 Dimeth_Pyl: Dimethyla 22.0 53 0.0011 30.0 1.5 22 160-181 409-430 (466)
120 PRK07198 hypothetical protein; 20.3 1.5E+02 0.0032 28.0 4.1 46 130-181 157-202 (418)
No 1
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-46 Score=324.01 Aligned_cols=259 Identities=55% Similarity=0.889 Sum_probs=241.6
Q ss_pred hhhhcCCCCCCCcCcccceeecccCCcEEEeCC-CCCChHHHHHHHHHHHHHHHHhCCeeEEEEccccccccchHHHhcC
Q 039665 14 EEEQNMMPEDGVRCPELLTAVGDLHGGVTVDMK-KPMDSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEG 92 (275)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~d~~~g~~v~~~-~~~~~~~f~~~l~~~l~~w~~~~~~~vW~~~~~~~~~l~~~~~~~g 92 (275)
+..+++.|.+..+++.++.+..|+||||.+++. .++|...|.+.|+.|+..|+.+|++++|++++...+++++++++.|
T Consensus 5 ~~k~~~~~~~~~~~~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~g 84 (295)
T KOG0648|consen 5 ALKAQPRMDSMSVGSSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYG 84 (295)
T ss_pred ccccccCCCccccchhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcC
Confidence 334446777888889999999999999999995 6669999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCeeeEEeecCCCcCCCCCCCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHH
Q 039665 93 FRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVR 172 (275)
Q Consensus 93 f~~~~~~~~~~~l~~wl~~~~~~~p~~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~R 172 (275)
|.|||+..+|+||+.|+++.+.++|.++.|+++++++|+|.+++||+++...+.....|.|++|+|.|+++|++.++|+|
T Consensus 85 f~~hHae~~~~~l~~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavr 164 (295)
T KOG0648|consen 85 FDYHHAESLYVMLTSWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVR 164 (295)
T ss_pred cEEecccccceeeeeeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhh
Confidence 99999999999999999999999999999999999999998899999998777777899999999999999999999999
Q ss_pred HHHHHhCCCcceeEEEEEEeeeccccc--eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHH
Q 039665 173 EVKEETGIDTEFVEVLAFRQSHRSFFR--KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYIC 250 (275)
Q Consensus 173 El~EEtGl~~~~~~~l~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~ 250 (275)
|++||||++.++.+++.+++.|...+. +.++||+|.+.+.+..++.+..|+..++||+++++...+..+...+++.+.
T Consensus 165 Evkeetgid~ef~eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~ 244 (295)
T KOG0648|consen 165 EVKEETGIDTEFVEVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAA 244 (295)
T ss_pred hhHHHhCcchhhhhHHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhHHHh
Confidence 999999999999999999999888877 899999999999888999999999999999999999999988888999999
Q ss_pred HHHHhhccCccCCCCCCCCCCC
Q 039665 251 QICLTKSEKEYAGFSPMPLTTG 272 (275)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~ 272 (275)
..|+.++...|.||++..+++.
T Consensus 245 ~Ic~~~~~~~~~~~~~~~l~~~ 266 (295)
T KOG0648|consen 245 GICLNRLEEFYLGLTAIVLTTT 266 (295)
T ss_pred hhhHHHHhhhcCCccceecccc
Confidence 9999999999999997766554
No 2
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.90 E-value=3.5e-23 Score=162.98 Aligned_cols=126 Identities=54% Similarity=0.883 Sum_probs=98.9
Q ss_pred ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS 201 (275)
Q Consensus 122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 201 (275)
|.++|+++|+|++++|||++++.. .++.|.+|||++++||++.+||+||++||||+.+.....++....+...+...
T Consensus 1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 77 (127)
T cd04670 1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKS 77 (127)
T ss_pred CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCce
Confidence 567899999998899999988743 47899999999999999999999999999999998888777655444445556
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHH
Q 039665 202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQI 252 (275)
Q Consensus 202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~ 252 (275)
.++|+|.+......+..+++|+.+++|++++++.+.++... +.+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~--~~~~~~~~ 126 (127)
T cd04670 78 DLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE--VNRLILDI 126 (127)
T ss_pred eEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH--HHHHHHhh
Confidence 67777766544444555678889999999999988766544 44444443
No 3
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.86 E-value=8.6e-21 Score=154.95 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=98.2
Q ss_pred cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEee-------
Q 039665 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQS------- 193 (275)
Q Consensus 121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~------- 193 (275)
.++++|+++|+|.+++|||+||.+ .++.|++|||++++||++.+||.||++||||+.+....+++....
T Consensus 6 ~~~~~v~~~i~~~~g~vLL~~r~~----~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~ 81 (156)
T PRK00714 6 GYRPNVGIILLNRQGQVFWGRRIG----QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLP 81 (156)
T ss_pred CCCCeEEEEEEecCCEEEEEEEcC----CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCc
Confidence 356789999999999999999974 247899999999999999999999999999999987877765421
Q ss_pred -------eccccceEEEEEEEEEecCCccccC---CccccceEEEEeHhhHhcCCCcccchHHHHHHHHH
Q 039665 194 -------HRSFFRKSDLFFVCMLRPRNFHIQK---QDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQIC 253 (275)
Q Consensus 194 -------~~~~~~~~~~~f~~~~~~~~~~~~~---~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~ 253 (275)
.....+...++|++........+.+ +++|+.+++|++++|+.++..+..+.+++.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~~~ 151 (156)
T PRK00714 82 KRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEF 151 (156)
T ss_pred HHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHHHH
Confidence 1112234567888877544333333 34699999999999999987666555666665543
No 4
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=4.2e-21 Score=150.70 Aligned_cols=112 Identities=21% Similarity=0.339 Sum_probs=87.5
Q ss_pred eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc--ccce
Q 039665 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRK 200 (275)
Q Consensus 123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~~~ 200 (275)
+++|+++|++.+++|||++|.+.+ .++.|.+|||++++||++.+||+||++||||+.+....+++....... ....
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 79 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAP--EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHW 79 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCC--CCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeE
Confidence 678999999988999999997543 468999999999999999999999999999999988888876654432 2234
Q ss_pred EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665 201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ 237 (275)
Q Consensus 201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~ 237 (275)
..++|++...... ....+++|+.+++|++++++.+.
T Consensus 80 ~~~~f~~~~~~~~-~~~~~~~E~~~~~W~~~~~l~~~ 115 (125)
T cd04679 80 VAPVYLAENFSGE-PRLMEPDKLLELGWFALDALPQP 115 (125)
T ss_pred EEEEEEEeecCCc-cccCCCccccEEEEeCHHHCCch
Confidence 4556777554222 22234578999999999998764
No 5
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.86 E-value=5.7e-21 Score=154.39 Aligned_cols=125 Identities=26% Similarity=0.464 Sum_probs=94.3
Q ss_pred ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEe-----eecc
Q 039665 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ-----SHRS 196 (275)
Q Consensus 122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~-----~~~~ 196 (275)
++.+|+++++|.+++|||++|.+.+ +.|.+|||++++||++.+||+||++||||+++....+++... ....
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~ 77 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPP 77 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC----CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChh
Confidence 4568999999988999999998533 799999999999999999999999999999988777776431 1110
Q ss_pred ----------ccceEEEEEEEEEecCCccccCC---ccccceEEEEeHhhHhcCCCcccchHHHHHH
Q 039665 197 ----------FFRKSDLFFVCMLRPRNFHIQKQ---DSEIAAAQWMQAEDYAAQPYVLKHQMFNYIC 250 (275)
Q Consensus 197 ----------~~~~~~~~f~~~~~~~~~~~~~~---~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~ 250 (275)
..+...++|++.+......+..+ ++|+.+++|++++++.++..+....++..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~ 144 (147)
T cd03671 78 ELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFKRPVYEAVL 144 (147)
T ss_pred hhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhhHHHHHHHH
Confidence 11345677777766533343333 5699999999999999987765544444433
No 6
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.86 E-value=1.8e-20 Score=151.06 Aligned_cols=115 Identities=22% Similarity=0.313 Sum_probs=88.0
Q ss_pred cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCccee--EEEEEEeeecc--
Q 039665 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV--EVLAFRQSHRS-- 196 (275)
Q Consensus 121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~--~~l~~~~~~~~-- 196 (275)
+++++|+++|+|.+++|||+||.+.+ .+|.|.||||+++.||++.+||+||++||||+.+... ++++.......
T Consensus 10 ~p~v~v~~vI~~~~g~vLl~~R~~~p--~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~ 87 (144)
T cd03430 10 TPLVSIDLIVENEDGQYLLGKRTNRP--AQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDN 87 (144)
T ss_pred CCeEEEEEEEEeCCCeEEEEEccCCC--CCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccc
Confidence 45788999999988999999998643 5789999999999999999999999999999998766 67766543211
Q ss_pred ----c--cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665 197 ----F--FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY 239 (275)
Q Consensus 197 ----~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 239 (275)
. .+....+|.|... .......++|+.+++|++++++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~~~~ 134 (144)
T cd03430 88 FFGDDFSTHYVVLGYVLKLS--SNELLLPDEQHSEYQWLTSDELLADDD 134 (144)
T ss_pred cccCCCccEEEEEEEEEEEc--CCcccCCchhccEeEEecHHHHhcCCC
Confidence 1 1223445555443 233445678999999999999997643
No 7
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.85 E-value=9.7e-21 Score=150.88 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=92.5
Q ss_pred eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEE
Q 039665 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSD 202 (275)
Q Consensus 123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 202 (275)
..+|+++++++++++||+++++.+. .++.|++|||+++.||++.+||+||++||||+.+..+..++.............
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPPV-GGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERI 80 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecCC-CCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccE
Confidence 3578899999999999999876653 568999999999999999999999999999999987777766554433334455
Q ss_pred EEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665 203 LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 203 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
++|+|...........++.|+.+++|++++|+.++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 81 HLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred EEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 677776544332245567889999999999999875543
No 8
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.85 E-value=3e-20 Score=151.87 Aligned_cols=114 Identities=19% Similarity=0.267 Sum_probs=84.8
Q ss_pred ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcce--eEEEEEEeeeccc--
Q 039665 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEF--VEVLAFRQSHRSF-- 197 (275)
Q Consensus 122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~--~~~l~~~~~~~~~-- 197 (275)
..++|.++|.+++++|||+||...+ .++.|+||||++++||++.+||+||++||||+.+.. ..+++.....+..
T Consensus 16 ~~~~v~~vI~~~~g~VLL~kR~~~~--~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~ 93 (159)
T PRK15434 16 PLISLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF 93 (159)
T ss_pred ceEEEEEEEECCCCEEEEEEccCCC--CCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeeccccc
Confidence 3568889999988999999997543 579999999999999999999999999999998743 3555543322211
Q ss_pred ----c--ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665 198 ----F--RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY 239 (275)
Q Consensus 198 ----~--~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 239 (275)
+ ....++|.|.. ..+.+..+++|+.+++|++++++..+..
T Consensus 94 ~~~~~~~~~i~~~f~~~~--~~g~~~~~~~E~~~~~W~~~~el~~~~~ 139 (159)
T PRK15434 94 SGTDFTTHYVVLGFRLRV--AEEDLLLPDEQHDDYRWLTPDALLASDN 139 (159)
T ss_pred CCCccceEEEEEEEEEEe--cCCcccCChHHeeEEEEEeHHHhhhccc
Confidence 1 12334455544 3445555677999999999999987643
No 9
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.85 E-value=1.4e-20 Score=157.90 Aligned_cols=154 Identities=17% Similarity=0.110 Sum_probs=114.2
Q ss_pred HHHHhCCeeE----EEEccccccccchHHHhcCceeccCCCCeeeEEeecCCCcCCCCCCCcceeEEEEEEEeCCceEEE
Q 039665 64 LWRQQGKRGV----WIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLV 139 (275)
Q Consensus 64 ~w~~~~~~~v----W~~~~~~~~~l~~~~~~~gf~~~~~~~~~~~l~~wl~~~~~~~p~~~~~~v~v~~vv~~~~~~vLL 139 (275)
.|+..+++.| ||++......+... .. ..|.+. . .+ +..+|++++++++++|||
T Consensus 7 ~~~~~~~~~v~~~~~~~v~~~~~~~~~G--~~-~~~~~v-------~---------~~----~~~~v~v~~~~~~~~vlL 63 (185)
T PRK11762 7 KPEILNRETVAKSRLFRVESVDLEFSNG--VE-RVYERM-------R---------PS----GRGAVMIVPILDDDTLLL 63 (185)
T ss_pred CCEEeeEEEEEeCCEEEEEEEEEEcCCC--CE-EEEEEE-------e---------cC----CCCEEEEEEEeCCCEEEE
Confidence 6777777777 99999888776321 11 111111 0 01 123576777888889999
Q ss_pred EEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEEEEecCCccccCC
Q 039665 140 VQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRPRNFHIQKQ 219 (275)
Q Consensus 140 v~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 219 (275)
++|++.+. +...|+||||.+|+||++.+||+||++||||+.+..+..++.+...++......++|+|...... ....+
T Consensus 64 vrq~r~~~-~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~f~a~~~~~~-~~~~~ 141 (185)
T PRK11762 64 IREYAAGT-ERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNIVLAEDLYPE-RLEGD 141 (185)
T ss_pred EEeecCCC-CCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEEEEEEccccc-cCCCC
Confidence 99987664 67889999999999999999999999999999999999999888777777777888888543222 22335
Q ss_pred ccccceEEEEeHhhHhcCCCccc
Q 039665 220 DSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 220 ~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
+.|..++.|++++++.++.....
T Consensus 142 e~E~i~~~~~~~~e~~~~~~~g~ 164 (185)
T PRK11762 142 EPEPLEVVRWPLADLDELLARPD 164 (185)
T ss_pred CCceeEEEEEcHHHHHHHHHcCC
Confidence 66778899999999988755543
No 10
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.85 E-value=1.3e-20 Score=152.43 Aligned_cols=125 Identities=27% Similarity=0.375 Sum_probs=89.8
Q ss_pred ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCc--ceeEEEEEEee------
Q 039665 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT--EFVEVLAFRQS------ 193 (275)
Q Consensus 122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~--~~~~~l~~~~~------ 193 (275)
++++|++++++.+++|||+||.+ .++.|++|||++|+||++.+||+||++||||+++ ....++.....
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIF 81 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecC----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccc
Confidence 56789999999899999998864 3578999999999999999999999999999998 44444321100
Q ss_pred -------eccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665 194 -------HRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK 256 (275)
Q Consensus 194 -------~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~ 256 (275)
.....+...++|+|.... ......+|+.++.|++++++.++..... .+.+++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~f~~~~~~---~~~~~~~E~~~~~W~~~~e~~~~~~~~~---~~~~l~~~~~~ 145 (148)
T PRK09438 82 PHWRHRYAPGVTRNTEHWFCLALPH---ERPVVLTEHLAYQWLDAREAAALTKSWS---NAEAIEQLVIR 145 (148)
T ss_pred hhhhhccccccCCceeEEEEEecCC---CCccccCcccceeeCCHHHHHHHhcChh---HHHHHHHHHHH
Confidence 112234556778776432 1122345899999999999999866443 44555555443
No 11
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=2.1e-20 Score=145.24 Aligned_cols=109 Identities=25% Similarity=0.337 Sum_probs=86.0
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcc-eeEEEEEEeeeccccceEEE
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE-FVEVLAFRQSHRSFFRKSDL 203 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~-~~~~l~~~~~~~~~~~~~~~ 203 (275)
+|.+++++.++++||++|.. .+.|.+|||++++||++.+||+||++||||+.+. ....++.............+
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~-----~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTY-----GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVI 76 (120)
T ss_pred ceEEEEECCCCeEEEEEECC-----CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEE
Confidence 57788999889999999873 2389999999999999999999999999999998 88888776655544445556
Q ss_pred EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665 204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV 240 (275)
Q Consensus 204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 240 (275)
+|.|... ......+++|+.+++|++++++.+...+
T Consensus 77 ~f~~~~~--~~~~~~~~~E~~~~~w~~~~~l~~~~~~ 111 (120)
T cd04680 77 VFRARAD--TQPVIRPSHEISEARFFPPDALPEPTTP 111 (120)
T ss_pred EEEeccc--CCCccCCcccEEEEEEECHHHCcccCCh
Confidence 6666443 3332456789999999999999885443
No 12
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.84 E-value=6.3e-20 Score=147.53 Aligned_cols=118 Identities=28% Similarity=0.375 Sum_probs=89.5
Q ss_pred cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc-cc
Q 039665 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF-FR 199 (275)
Q Consensus 121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~-~~ 199 (275)
....+|+++|+|.++++||++++..+ .++.|+||||++++||++.+||+||++||||+++.....++.+...... ..
T Consensus 11 ~~~~av~~vv~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 88 (142)
T cd04700 11 VEARAAGAVILNERNDVLLVQEKGGP--KKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGVL 88 (142)
T ss_pred eeeeeEEEEEEeCCCcEEEEEEcCCC--CCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCcE
Confidence 34568999999988899999986543 5789999999999999999999999999999999888877755432222 12
Q ss_pred eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665 200 KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 200 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
...++|++........+. ..+|+.+++|++++++.++....
T Consensus 89 ~~~~~f~~~~~~~~~~~~-~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 89 VLRHVWLAEPEGQTLAPK-FTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred EEEEEEEEEecCCccccC-CCCCEEEEEEECHHHhhhccccc
Confidence 334677776543222222 34789999999999999886543
No 13
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.84 E-value=3.6e-20 Score=145.96 Aligned_cols=120 Identities=30% Similarity=0.485 Sum_probs=94.7
Q ss_pred eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecccc---c
Q 039665 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF---R 199 (275)
Q Consensus 123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~---~ 199 (275)
+.+|++++++.+++|||++|.+.+...++.|.+|||++++||++.+||+||++||||+.+.....++......... +
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (134)
T PF00293_consen 2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG 81 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence 5679999999988999999997654467999999999999999999999999999999987666666544433322 2
Q ss_pred eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 200 KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 200 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
...++|++.+.........+..|..+++|++++++.++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 124 (134)
T PF00293_consen 82 EIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGR 124 (134)
T ss_dssp EEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTH
T ss_pred EEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcc
Confidence 5566677766554434445556999999999999999866554
No 14
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=6.8e-20 Score=144.48 Aligned_cols=113 Identities=30% Similarity=0.472 Sum_probs=88.6
Q ss_pred eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc--ccce
Q 039665 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRK 200 (275)
Q Consensus 123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~~~ 200 (275)
+++|+++++|.+++|||++|..++ .++.|.+|||++++||++.+||+||++||||+++.....++....... ....
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~~--~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 79 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGSH--GAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHY 79 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEE
Confidence 578999999988999999998543 578999999999999999999999999999999988887776554322 2234
Q ss_pred EEEEEEEEEecCCccccC-CccccceEEEEeHhhHhcC
Q 039665 201 SDLFFVCMLRPRNFHIQK-QDSEIAAAQWMQAEDYAAQ 237 (275)
Q Consensus 201 ~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~eel~~~ 237 (275)
..++|.|........... +.+|..+++|++++++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 80 VTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 556777766543322221 4567889999999999987
No 15
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.84 E-value=5.9e-20 Score=144.69 Aligned_cols=109 Identities=27% Similarity=0.405 Sum_probs=84.4
Q ss_pred eEEEEEEEeCC---ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc----
Q 039665 124 VGVGAFVMNNK---RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS---- 196 (275)
Q Consensus 124 v~v~~vv~~~~---~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~---- 196 (275)
.++++++++.+ ++|||+++++ .+.|.||||++++||++.+||.||++||||+.+.....++.......
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~-----~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 76 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPR-----GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGK 76 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCC-----CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCC
Confidence 35788888865 8999999974 27899999999999999999999999999999988887776544333
Q ss_pred ccceEEEEEEEEEecCCccccC-CccccceEEEEeHhhHhcCCC
Q 039665 197 FFRKSDLFFVCMLRPRNFHIQK-QDSEIAAAQWMQAEDYAAQPY 239 (275)
Q Consensus 197 ~~~~~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~eel~~~~~ 239 (275)
......++|++.... ..... ++.|+.+++|++++++.++..
T Consensus 77 ~~~~~~~~~~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 77 RVHKTVHWWLMRALG--GEFTPQPDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred CcceEEEEEEEEEcC--CCcccCCCCcEEEEEEcCHHHHHHHcC
Confidence 233555666665432 23332 567899999999999988654
No 16
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=4.8e-20 Score=144.20 Aligned_cols=112 Identities=23% Similarity=0.291 Sum_probs=81.5
Q ss_pred EEEEEeCCceEEEEEEecC-CCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665 127 GAFVMNNKRELLVVQENNG-ALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF 205 (275)
Q Consensus 127 ~~vv~~~~~~vLLv~r~~~-~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 205 (275)
+++++.++++|||++|.+. ....+|.|.||||+++.||++.+||+||++||||++++...+...............++|
T Consensus 4 ~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f 83 (122)
T cd04682 4 ALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVF 83 (122)
T ss_pred EEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEEE
Confidence 3344444599999999865 345689999999999999999999999999999999864333222222222334566777
Q ss_pred EEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665 206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY 239 (275)
Q Consensus 206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 239 (275)
++...... ....+.+|+.+++|++++|+.+...
T Consensus 84 ~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~ 116 (122)
T cd04682 84 VVPLTARE-DAILFGDEGQALRLMTVEEFLAHED 116 (122)
T ss_pred EEEEecCC-CccccCchhheeecccHHHHhhccc
Confidence 77665332 3445778999999999999987644
No 17
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.83 E-value=9.3e-20 Score=142.97 Aligned_cols=114 Identities=26% Similarity=0.362 Sum_probs=86.6
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc------c
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF------F 198 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~------~ 198 (275)
+|+++|+++ ++|||+++.+.+ .++.|.+|||++++||++.+||+||++||||+.+....+++........ .
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDA 78 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeec
Confidence 577888886 899999998654 5799999999999999999999999999999999888877765432211 2
Q ss_pred ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665 199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 199 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
....++|.|.............+|..++.|++++++......+
T Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~ 121 (128)
T cd04684 79 HHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSP 121 (128)
T ss_pred cEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCH
Confidence 3455677776543322113456788899999999998765543
No 18
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.3e-19 Score=141.09 Aligned_cols=113 Identities=28% Similarity=0.463 Sum_probs=85.0
Q ss_pred eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc------
Q 039665 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF------ 197 (275)
Q Consensus 124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~------ 197 (275)
++|+++++++ +++||++|++.. +++.|.||||++++||++.+||+||++||||+++.....++........
T Consensus 1 ~~v~~ii~~~-~~vLl~~r~~~~--~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd04673 1 VAVGAVVFRG-GRVLLVRRANPP--DAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVE 77 (122)
T ss_pred CcEEEEEEEC-CEEEEEEEcCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccc
Confidence 3577888875 789999998643 5689999999999999999999999999999998877777765543321
Q ss_pred cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
.....+.|+|... .... .+++|+.+++|++++++.++++...
T Consensus 78 ~~~~~~~~~~~~~--~~~~-~~~~E~~~~~w~~~~el~~~~~~~~ 119 (122)
T cd04673 78 FHYVLIDFLCRYL--GGEP-VAGDDALDARWVPLDELAALSLTES 119 (122)
T ss_pred eEEEEEEEEEEeC--CCcc-cCCcccceeEEECHHHHhhCcCCcc
Confidence 1233344555432 3333 3457889999999999999877643
No 19
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.8e-19 Score=140.88 Aligned_cols=109 Identities=22% Similarity=0.417 Sum_probs=82.4
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF 205 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 205 (275)
|++++++++++|||++|.+. +.+.|+||||++++||++.+||+||++||||+++....+++.... .+...++|
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f 75 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYF 75 (121)
T ss_pred eEEEEEeCCCEEEEEEEecC---CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEE
Confidence 66788887789999998753 357999999999999999999999999999999977776665543 23446788
Q ss_pred EEEEecCCcccc-------CCccccceEEEEeHhhHhcCCCcc
Q 039665 206 VCMLRPRNFHIQ-------KQDSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 206 ~~~~~~~~~~~~-------~~~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
+|.......... .++.+..++.|++++++..+++.+
T Consensus 76 ~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 76 LARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred EEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 886543211110 113456679999999999987654
No 20
>PLN02325 nudix hydrolase
Probab=99.83 E-value=9.3e-20 Score=146.90 Aligned_cols=116 Identities=23% Similarity=0.356 Sum_probs=86.0
Q ss_pred CCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc--
Q 039665 119 NASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS-- 196 (275)
Q Consensus 119 ~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~-- 196 (275)
+++.+++|+++++++ ++|||+||.+.+ +.+.|.+|||+++.||++.+||+||++||||+++....+++.......
T Consensus 5 ~~~p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~ 81 (144)
T PLN02325 5 EPIPRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEE 81 (144)
T ss_pred CCCCeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecC
Confidence 346688898888884 699999987543 468999999999999999999999999999999998888877543221
Q ss_pred --ccceEEEEEEEEEecCCc-cccCCccccceEEEEeHhhHhcC
Q 039665 197 --FFRKSDLFFVCMLRPRNF-HIQKQDSEIAAAQWMQAEDYAAQ 237 (275)
Q Consensus 197 --~~~~~~~~f~~~~~~~~~-~~~~~~~E~~~~~Wv~~eel~~~ 237 (275)
..+...++|.|....... ....+++|..+++|+++++|...
T Consensus 82 ~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 82 PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence 122344556665432221 22234456788999999998864
No 21
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.83 E-value=3.1e-19 Score=141.63 Aligned_cols=127 Identities=29% Similarity=0.321 Sum_probs=90.2
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc--cceEE
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF--FRKSD 202 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~--~~~~~ 202 (275)
+|++++.+ ++++||++|.+. +++.|.+|||++++||++.+||.||++||||+++....+++........ .....
T Consensus 2 ~v~~ii~~-~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 77 (134)
T cd03675 2 TVAAVVER-DGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLR 77 (134)
T ss_pred eEEEEEEE-CCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEE
Confidence 46566555 679999999764 4689999999999999999999999999999999877777655433222 12233
Q ss_pred EEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665 203 LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK 256 (275)
Q Consensus 203 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~ 256 (275)
++|++.+...... ...++|+.++.|++++++..+......+.+.+.+..++..
T Consensus 78 ~~f~~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~~ 130 (134)
T cd03675 78 FAFAAELLEHLPD-QPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLAG 130 (134)
T ss_pred EEEEEEECCCCCC-CCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHhc
Confidence 4566655432211 1245688999999999999986433334566666666644
No 22
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.3e-19 Score=142.27 Aligned_cols=112 Identities=25% Similarity=0.400 Sum_probs=82.7
Q ss_pred eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc--cc---
Q 039665 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FF--- 198 (275)
Q Consensus 124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~--- 198 (275)
++|+++|+|.+++|||+|+.+ .++.|.+|||++++||++.+||+||++||||+++....+++.....+. ..
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPA 78 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCcc
Confidence 568889999889999998753 468999999999999999999999999999999887776654332221 11
Q ss_pred ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 199 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
....+.|.+... ...+. .++|+.+++|++++++.++++...
T Consensus 79 ~~~~~~~~~~~~--~~~~~-~~~e~~~~~W~~~~el~~~~~~~~ 119 (125)
T cd04696 79 HFVLFDFFARTD--GTEVT-PNEEIVEWEWVTPEEALDYPLNSF 119 (125)
T ss_pred EEEEEEEEEEec--CCccc-CCcccceeEEECHHHHhcCCCCHH
Confidence 122233444432 22333 346889999999999999877554
No 23
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.83 E-value=1.9e-19 Score=143.92 Aligned_cols=120 Identities=23% Similarity=0.387 Sum_probs=84.0
Q ss_pred eEEEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEE-----Eeeeccc
Q 039665 124 VGVGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAF-----RQSHRSF 197 (275)
Q Consensus 124 v~v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~-----~~~~~~~ 197 (275)
.+|+++++|++ ++|||++|++ .+.|.+|||++++||++.+||+||++||||+++..+...++ ....+..
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 77 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGH 77 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEcC-----CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCC
Confidence 35788999977 8999999873 47899999999999999999999999999998776655431 1111111
Q ss_pred -------cceEEEEEEEEEecCCcccc-CCccccceEEEEeHhhHhcCCCcccchHHHHHHHHH
Q 039665 198 -------FRKSDLFFVCMLRPRNFHIQ-KQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQIC 253 (275)
Q Consensus 198 -------~~~~~~~f~~~~~~~~~~~~-~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~ 253 (275)
......+|+|.... +... .+++|..+++|++++++..+++... .+.+++.+
T Consensus 78 ~~~~~~~~~~~~~~y~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~i~~~ 136 (138)
T cd03674 78 PKRGVPGHLHLDLRFLAVAPA--DDVAPPKSDESDAVRWFPLDELASLELPED---VRRLVEKA 136 (138)
T ss_pred CCCCCCCcEEEEEEEEEEccC--ccccCCCCCcccccEEEcHHHhhhccCCHH---HHHHHHHH
Confidence 11233456665432 2322 2567999999999999987765443 44444443
No 24
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.83 E-value=6.3e-20 Score=148.03 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=85.0
Q ss_pred EEEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665 125 GVGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL 203 (275)
Q Consensus 125 ~v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 203 (275)
.+++++++++ ++|||+|+++ .+.|+||||++++||++.+||+||++||||+.+........ +......+...+
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~-~~~~~~~~~~~~ 76 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDD-YIELIIRGQNVK 76 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccce-eeecccCCcEEE
Confidence 4778888865 6999999873 24899999999999999999999999999998865322111 111222234445
Q ss_pred EEEEEEecCCccccC-CccccceEEEEeHhhHhcCCCcc-------cchHHHHHHHHHHhhc
Q 039665 204 FFVCMLRPRNFHIQK-QDSEIAAAQWMQAEDYAAQPYVL-------KHQMFNYICQICLTKS 257 (275)
Q Consensus 204 ~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~eel~~~~~~~-------~~~~~~~~~~~~~~~~ 257 (275)
+|++........... +++|+.+++|++++++.++.... ...+++.++.-+..++
T Consensus 77 ~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (145)
T cd03672 77 LYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKKIPGLNSNKFFMVIPFIKPLKKWI 138 (145)
T ss_pred EEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhccccccccceEEEhHHHHHHHHHH
Confidence 666643222222222 35789999999999999875543 2334555555544443
No 25
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.9e-19 Score=140.08 Aligned_cols=112 Identities=23% Similarity=0.362 Sum_probs=81.9
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcc--eeEEEEEEeeeccc-cceE
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE--FVEVLAFRQSHRSF-FRKS 201 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~--~~~~l~~~~~~~~~-~~~~ 201 (275)
+|.+++++ +++|||+||.+.+. .++.|.+|||++++||++.+||+||++||||+.+. .+.+++........ ....
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~~-~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~ 79 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTGY-MDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRI 79 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCCC-CCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEE
Confidence 46677766 57999999986543 57999999999999999999999999999999986 55566655443332 2344
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665 202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY 239 (275)
Q Consensus 202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 239 (275)
.++|.|..... .....+++|+.+++|++++++.....
T Consensus 80 ~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 80 GLFFTVRRWSG-EPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred EEEEEEEeecC-ccccCCCCcEeeEEEEchHHCcchhc
Confidence 55666644321 12223457889999999999987543
No 26
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.1e-19 Score=143.00 Aligned_cols=113 Identities=22% Similarity=0.285 Sum_probs=88.3
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeC-cceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKL-PTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL 203 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~l-PgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 203 (275)
++.++++|.+++|||++|...+...+|.|++ |||++++||++.+||+||++||||+.+..+..++.+...........+
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~ 81 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGK 81 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEE
Confidence 4678999999999999887665556899999 699999999999999999999999999877777665544333333445
Q ss_pred EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665 204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV 240 (275)
Q Consensus 204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 240 (275)
+|.+... .....+++|+.+++|++++++.++...
T Consensus 82 ~f~~~~~---~~~~~~~~E~~~~~w~~~~el~~~~~~ 115 (126)
T cd04697 82 VFSCVYD---GPLKLQEEEVEEITWLSINEILQFKEG 115 (126)
T ss_pred EEEEEEC---CCCCCCHhHhhheEEcCHHHHHHHhhc
Confidence 6666442 344556789999999999999987543
No 27
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.82 E-value=1.4e-19 Score=147.96 Aligned_cols=114 Identities=20% Similarity=0.214 Sum_probs=89.2
Q ss_pred EEEEEEEeCC--ceEEEEEEecCCCCCCCceeCcceeccCC-CCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceE
Q 039665 125 GVGAFVMNNK--RELLVVQENNGALKGTGVWKLPTGTIEEG-EDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKS 201 (275)
Q Consensus 125 ~v~~vv~~~~--~~vLLv~r~~~~~~~~~~w~lPgG~ve~g-Es~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 201 (275)
+|.+++.+.+ ++|||+||.......+|.|+||||++++| |++.+||+||++||||+++..+..++.........+..
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 83 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV 83 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence 4556666644 68999999876544689999999999999 99999999999999999998888887765444433455
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665 202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY 239 (275)
Q Consensus 202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 239 (275)
.++|++..... ..+.++++|+.++.|++++++.+...
T Consensus 84 v~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~ 120 (157)
T cd03426 84 VTPVVGLVPPP-LPLVLNPDEVAEVFEVPLSFLLDPAN 120 (157)
T ss_pred EEEEEEEECCC-CCCCCCHHHhheeEEEcHHHHhCcCC
Confidence 56677765432 34556778999999999999998744
No 28
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.8e-19 Score=142.25 Aligned_cols=107 Identities=32% Similarity=0.587 Sum_probs=82.1
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc----cce
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF----FRK 200 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~----~~~ 200 (275)
+|++++++.+++|||++|.+.+ .++.|.+|||+++.||++.+||.||++||||+++..+..++........ ...
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREP--GKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDT 80 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCC--CCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEE
Confidence 5778889988999999997654 4689999999999999999999999999999999888877654322211 112
Q ss_pred EEEEEEEEEecCCccccCCccccceEEEEeHhhHh
Q 039665 201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYA 235 (275)
Q Consensus 201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~ 235 (275)
..++|+|.+.. .....+.+|+.+++|++++++.
T Consensus 81 ~~~~~~~~~~~--~~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 81 LDLFFVCQVDD--KPIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred EEEEEEEEeCC--CCCcCChHHhheeEEecHHHCC
Confidence 33466676542 2334456799999999999985
No 29
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.82 E-value=2.7e-19 Score=143.44 Aligned_cols=117 Identities=19% Similarity=0.276 Sum_probs=78.4
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEe------eec--cc
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ------SHR--SF 197 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~------~~~--~~ 197 (275)
+.+.+++.+++|||+||...+...+|.|++|||++++||++.+||+||++||||+++....+..... ..+ ..
T Consensus 6 ~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T PRK15472 6 IVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGR 85 (141)
T ss_pred EEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCC
Confidence 3344555578999999876554568999999999999999999999999999999875433221100 011 11
Q ss_pred cceEEEEE-EEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc
Q 039665 198 FRKSDLFF-VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH 243 (275)
Q Consensus 198 ~~~~~~~f-~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~ 243 (275)
.....++| ++.+......+. .++|+.+++|++++|+.++++...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~w~~~~el~~l~~~~~~ 131 (141)
T PRK15472 86 KEEIYMIYLIFDCVSANRDVK-INEEFQDYAWVKPEDLVHYDLNVAT 131 (141)
T ss_pred ceeEEEEEEEEEeecCCCccc-CChhhheEEEccHHHhccccccHHH
Confidence 11222222 223333333433 3478999999999999999776553
No 30
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.82 E-value=4.4e-19 Score=141.23 Aligned_cols=120 Identities=23% Similarity=0.327 Sum_probs=86.8
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc--cceEEE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF--FRKSDL 203 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~--~~~~~~ 203 (275)
+.+++.+ ++++||++|.+.+ ..+.|.+|||++++||++.+||+||++||||+.+....+++.+...... .....+
T Consensus 4 ~~~~i~~-~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T cd03427 4 TLCFIKD-PDKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF 80 (137)
T ss_pred EEEEEEE-CCEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEE
Confidence 3355555 4899999998654 5789999999999999999999999999999999888888776654432 233444
Q ss_pred EEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHH
Q 039665 204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICL 254 (275)
Q Consensus 204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~ 254 (275)
+|+|.. ...... ...|..+++|++++++.++++... .+.++..++
T Consensus 81 ~f~~~~--~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~ 125 (137)
T cd03427 81 VFLATE--FEGEPL-KESEEGILDWFDIDDLPLLPMWPG---DREWLPLML 125 (137)
T ss_pred EEEECC--cccccC-CCCccccceEEcHhhcccccCCCC---cHHHHHHHh
Confidence 555532 233332 345667899999999998766554 334445544
No 31
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.81 E-value=2e-19 Score=152.55 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=96.1
Q ss_pred EEEEEEEeC-CceEEEEEEecCCCC----CCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc
Q 039665 125 GVGAFVMNN-KRELLVVQENNGALK----GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR 199 (275)
Q Consensus 125 ~v~~vv~~~-~~~vLLv~r~~~~~~----~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~ 199 (275)
+|+++++++ +++|||++|+|.+.. .+..|++|+|.+|+||++.+||+|||.||||+.+..+..++.++..++..+
T Consensus 51 ~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~~ 130 (202)
T PRK10729 51 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGGTS 130 (202)
T ss_pred eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCcCc
Confidence 577788886 479999999987642 236899999999999999999999999999999999999988888888888
Q ss_pred eEEEEEEEEEecC---CccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 200 KSDLFFVCMLRPR---NFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 200 ~~~~~f~~~~~~~---~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
...++|++..... ......+++|..++.|++++++.++.....
T Consensus 131 e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~ 176 (202)
T PRK10729 131 ERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGK 176 (202)
T ss_pred eEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCC
Confidence 8999999975321 111234667888999999999998865543
No 32
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3.5e-19 Score=138.45 Aligned_cols=107 Identities=25% Similarity=0.319 Sum_probs=80.7
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF 205 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 205 (275)
|+++++++ ++|||+||.+.+...++.|+||||++++||++.+||+||++||||+++.....++....... .....++|
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~ 80 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYY 80 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEE
Confidence 45566664 89999999765434689999999999999999999999999999999766666665544333 33455666
Q ss_pred EEEEecCCccccCCccccceEEEEeHhhHhcCC
Q 039665 206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP 238 (275)
Q Consensus 206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 238 (275)
++... .+.+ ..+|+.++.|++++++..+.
T Consensus 81 ~~~~~--~~~~--~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 81 VVTFW--QGEI--PAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred EEEEe--cCCC--CcccccccEEcCHHHcchhh
Confidence 66443 2232 34789999999999998654
No 33
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=2.9e-19 Score=141.20 Aligned_cols=112 Identities=26% Similarity=0.418 Sum_probs=82.1
Q ss_pred ceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeee---c--c
Q 039665 122 HRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSH---R--S 196 (275)
Q Consensus 122 ~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~---~--~ 196 (275)
+.++|++++++.+++|||++|.. .+.|.||||++++||++.+||+||++||||+.+.....++.+... . .
T Consensus 6 ~~~~~~~~v~~~~~~vLL~~r~~-----~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSD-----TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPN 80 (132)
T ss_pred cccceEEEEEeCCCCEEEEEecC-----CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCC
Confidence 45678888999889999998873 278999999999999999999999999999999888777644211 1 1
Q ss_pred c--cceE-EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665 197 F--FRKS-DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV 240 (275)
Q Consensus 197 ~--~~~~-~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 240 (275)
. .... .++|++.. ....+..+.+|..+++|++++++.++...
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 81 GDDEQYIVTLYYVTKV--FGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred CCcEEEEEEEEEEEec--cCCcccCCCCceeeEEEEChhHCccchhH
Confidence 1 1112 23333322 22333456778999999999999887544
No 34
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=8.3e-19 Score=138.22 Aligned_cols=114 Identities=26% Similarity=0.473 Sum_probs=82.0
Q ss_pred eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeec--------
Q 039665 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHR-------- 195 (275)
Q Consensus 124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~-------- 195 (275)
.+|+++|++ +++|||+++.+. ..+.|.+|||++++||++.+||+||++||||+.+....++.......
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~~---~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~ 77 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHDD---GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELP 77 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEcC---CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCC
Confidence 467788887 579999998743 34789999999999999999999999999999987766655433221
Q ss_pred cccceEEEEEEEEEecCCc-cc-cCCccccceEEEEeHhhHhcCCCcc
Q 039665 196 SFFRKSDLFFVCMLRPRNF-HI-QKQDSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 196 ~~~~~~~~~f~~~~~~~~~-~~-~~~~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
...+...++|+|....... .. ...+.+..+++|++++++.+++..+
T Consensus 78 ~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p 125 (128)
T cd04687 78 GHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP 125 (128)
T ss_pred CceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence 1233455677776643221 11 1123455789999999999887654
No 35
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=7.3e-19 Score=137.96 Aligned_cols=105 Identities=34% Similarity=0.538 Sum_probs=80.5
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF 205 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 205 (275)
|++++++.+++|||++|.+.+ .++.|.+|||+++.||++.+||+||++||||+++....+++..... .....++|
T Consensus 3 ~~~vv~~~~~~vLl~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~~~~f 77 (123)
T cd04671 3 VAAVILNNQGEVLLIQEAKRS--CRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWFRFVF 77 (123)
T ss_pred EEEEEEcCCCEEEEEEecCCC--CCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEEEEEE
Confidence 678888888999999998654 4789999999999999999999999999999999888877654321 23445667
Q ss_pred EEEEecCCccc-cCCccccceEEEEeHhhHh
Q 039665 206 VCMLRPRNFHI-QKQDSEIAAAQWMQAEDYA 235 (275)
Q Consensus 206 ~~~~~~~~~~~-~~~~~E~~~~~Wv~~eel~ 235 (275)
.|......... ..++.|+.+++|++++++.
T Consensus 78 ~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~ 108 (123)
T cd04671 78 TGNITGGDLKTEKEADSESLQARWYSNKDLP 108 (123)
T ss_pred EEEEeCCeEccCCCCCcceEEEEEECHHHCC
Confidence 77554322111 1234577899999999993
No 36
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3.5e-19 Score=139.87 Aligned_cols=115 Identities=27% Similarity=0.410 Sum_probs=83.2
Q ss_pred eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc--cceE
Q 039665 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF--FRKS 201 (275)
Q Consensus 124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~--~~~~ 201 (275)
++|+++|+++++++||+||.+.+...++.|+||||++++||++.+||+||++||||+.+.....++....+... ....
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI 81 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence 35777888877899999998766446899999999999999999999999999999998777665333333222 2233
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665 202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
.++|.|... .. ....++|..+++|++++++..+..+.
T Consensus 82 ~~~~~~~~~--~~-~~~~~~e~~~~~w~~~~el~~~~~~~ 118 (129)
T cd04699 82 YLVFVCEAL--SG-AVKLSDEHEEYAWVTLEELAILKADI 118 (129)
T ss_pred EEEEEeeec--CC-cccCChhheEEEEecHHHhhhhhccc
Confidence 344444322 21 22345688899999999987665553
No 37
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.81 E-value=1.8e-18 Score=137.36 Aligned_cols=123 Identities=23% Similarity=0.245 Sum_probs=87.8
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF 205 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 205 (275)
+.+++++.+++|||+||.+.+. ++|.|+||||++++||++.+||+||++||||+.+....+++...+.........++|
T Consensus 6 ~~~~ii~~~~~vLL~~R~~~~~-~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (135)
T PRK10546 6 VVAAIIERDGKILLAQRPAHSD-QAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAW 84 (135)
T ss_pred EEEEEEecCCEEEEEEccCCCC-CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEE
Confidence 3344456678999999976543 679999999999999999999999999999999877776765555444444344455
Q ss_pred EEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665 206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK 256 (275)
Q Consensus 206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~ 256 (275)
.+... .+.+ ...|..+++|++++++..++++.. .+.+++.+++.
T Consensus 85 ~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~ 128 (135)
T PRK10546 85 HVPDF--HGEL--QAHEHQALVWCTPEEALRYPLAPA---DIPLLEAFMAL 128 (135)
T ss_pred EEEEe--cCcc--cccccceeEEcCHHHcccCCCCcC---cHHHHHHHHHh
Confidence 55332 1222 234677899999999999887655 33445555444
No 38
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.80 E-value=7.6e-19 Score=139.31 Aligned_cols=106 Identities=25% Similarity=0.327 Sum_probs=82.8
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEE
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLF 204 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 204 (275)
+|.+++.++++++||++|++. ..+.|.+|||+++.||++.+||+||++||||+.+..+..++...... .....++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~---~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~--~~~~~~~ 76 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRF---PPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPF--PSSLMLG 76 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCC---CCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCC--CceEEEE
Confidence 355667777789999999753 26899999999999999999999999999999998888776543222 2344566
Q ss_pred EEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665 205 FVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ 237 (275)
Q Consensus 205 f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~ 237 (275)
|+|.... .....+++|+.++.|++++++.++
T Consensus 77 f~~~~~~--~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 77 FTAEADS--GEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEEcC--CcccCCchhhhccEeecHHHHhhc
Confidence 7776543 445556789999999999999874
No 39
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=8.6e-19 Score=137.29 Aligned_cols=113 Identities=27% Similarity=0.469 Sum_probs=83.3
Q ss_pred eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeee---c--cc
Q 039665 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSH---R--SF 197 (275)
Q Consensus 123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~---~--~~ 197 (275)
+.+|+++++|+++++||+||.. .+.|.||||+++.||++.+||+||++||||+.+....+++..... . ..
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~-----~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 76 (129)
T cd04676 2 LPGVTAVVRDDEGRVLLIRRSD-----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPN 76 (129)
T ss_pred cceEEEEEECCCCeEEEEEecC-----CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCC
Confidence 3468888889889999999873 388999999999999999999999999999998777765432211 1 11
Q ss_pred ---cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 198 ---FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 198 ---~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
.....++|++... ......+..|..+++|++++++..+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~w~~~~el~~~~~~~~ 122 (129)
T cd04676 77 GDVRQYLDITFRCRVV--GGELRVGDDESLDVAWFDPDGLPPLLMHPS 122 (129)
T ss_pred CCcEEEEEEEEEEEee--CCeecCCCCceeEEEEEChhhCccccCCHh
Confidence 1233445555443 223323567888999999999999877654
No 40
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.1e-18 Score=136.60 Aligned_cols=111 Identities=25% Similarity=0.473 Sum_probs=84.3
Q ss_pred eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc-----
Q 039665 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF----- 197 (275)
Q Consensus 123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~----- 197 (275)
+++|+++|+++ +++||+++++ .+.|.+|||++++||++.+||+||++||||+.+....+++........
T Consensus 2 ~~~v~~~i~~~-~~vLL~~~~~-----~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~ 75 (123)
T cd04672 2 KVDVRAAIFKD-GKILLVREKS-----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQP 75 (123)
T ss_pred cceEEEEEEEC-CEEEEEEEcC-----CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCc
Confidence 56788898986 7999999974 578999999999999999999999999999998777777765432211
Q ss_pred cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
......+|+|.... ..+... +|..+++|++++++.++..+..
T Consensus 76 ~~~~~~~f~~~~~~--~~~~~~-~E~~~~~W~~~~el~~l~~~~~ 117 (123)
T cd04672 76 YQVYKLFFLCEILG--GEFKPN-IETSEVGFFALDDLPPLSEKRN 117 (123)
T ss_pred eEEEEEEEEEEecC--CcccCC-CceeeeEEECHHHCcccccCCc
Confidence 12334566665542 233333 7889999999999998876543
No 41
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.79 E-value=1.7e-18 Score=144.58 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=83.7
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCce-eCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEE
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVW-KLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDL 203 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w-~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 203 (275)
++.++|+|++++|||++|...+...+|.| .+|||++++||++.+||+|||+||||+.+..+..++.+...........+
T Consensus 39 ~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 118 (180)
T PRK15393 39 ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWGA 118 (180)
T ss_pred EEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEEE
Confidence 46778889889999998875554456777 57999999999999999999999999987766666655443333333344
Q ss_pred EEEEEEecCCccccCCccccceEEEEeHhhHhcCC
Q 039665 204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP 238 (275)
Q Consensus 204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 238 (275)
+|.+.. ......+++|+.+++|++++++.++.
T Consensus 119 ~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~ 150 (180)
T PRK15393 119 LFSCVS---HGPFALQEEEVSEVCWMTPEEITARC 150 (180)
T ss_pred EEEEEe---CCCCCCChHHeeEEEECCHHHHhhhh
Confidence 555543 23455577899999999999999873
No 42
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=7.4e-19 Score=138.33 Aligned_cols=112 Identities=24% Similarity=0.287 Sum_probs=79.9
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCcceeE--EEEEEeeeccccceE
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFVE--VLAFRQSHRSFFRKS 201 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~~--~l~~~~~~~~~~~~~ 201 (275)
.|.+++++++++|||+||...+...+|.|++| ||++++||++ +||+||++||||+.+.... .++.+...... ...
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-~~~ 79 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEG-FDD 79 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCC-eEE
Confidence 36788899889999999886554567999998 8999999999 9999999999999976433 33333222211 112
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665 202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV 240 (275)
Q Consensus 202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 240 (275)
.++|.+ .........+++|+.+++|++++++.++...
T Consensus 80 ~~~~~~--~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 116 (127)
T cd04693 80 YYLFYA--DVEIGKLILQKEEVDEVKFVSKDEIDGLIGH 116 (127)
T ss_pred EEEEEe--cCcccccccCHHHhhhEEEeCHHHHHHHHhc
Confidence 222222 2223344556789999999999999887544
No 43
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.79 E-value=4.4e-18 Score=133.45 Aligned_cols=112 Identities=20% Similarity=0.293 Sum_probs=83.5
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF 205 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 205 (275)
++++|.+.++++||+||...+. .+|.|+||||++++||++.+||.||++||||+++.....++...+.+.......++|
T Consensus 7 ~~~ii~~~~~~vll~rR~~~~~-~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
T PRK10776 7 AVGIIRNPNNEIFITRRAADAH-MAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFW 85 (129)
T ss_pred EEEEEECCCCEEEEEEecCCCC-CCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEE
Confidence 4456677778999999976553 679999999999999999999999999999998776666665555454444444555
Q ss_pred EEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
.+... ... ....|..+++|++++++..++++..
T Consensus 86 ~~~~~--~~~--~~~~e~~~~~W~~~~~l~~~~~p~~ 118 (129)
T PRK10776 86 LVESW--EGE--PWGKEGQPGRWVSQVALNADEFPPA 118 (129)
T ss_pred EEEEE--CCc--cCCccCCccEEecHHHCccCCCCcc
Confidence 55432 111 1234677889999999999877755
No 44
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.79 E-value=2.3e-18 Score=151.05 Aligned_cols=125 Identities=21% Similarity=0.213 Sum_probs=95.2
Q ss_pred cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK 200 (275)
Q Consensus 121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~ 200 (275)
.+..+|.++|. ++++|||+++++.+ .+.|.+|||++|+||++++||+||++||||+++..+.+++.....+ .+.
T Consensus 130 ~~~paViv~V~-~~~~iLL~rr~~~~---~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~~--p~~ 203 (256)
T PRK00241 130 RIAPCIIVAVR-RGDEILLARHPRHR---NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWPF--PHS 203 (256)
T ss_pred CCCCEEEEEEE-eCCEEEEEEccCCC---CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeecC--CCe
Confidence 44455655554 46899999987643 5899999999999999999999999999999998888887654322 234
Q ss_pred EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHh
Q 039665 201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLT 255 (275)
Q Consensus 201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~ 255 (275)
..+.|.+... .+++..+++|+.+++|++++|+..++... .+.+.+++..++
T Consensus 204 lm~~f~a~~~--~~~~~~~~~Ei~~a~W~~~del~~lp~~~--sia~~li~~~~~ 254 (256)
T PRK00241 204 LMLGFHADYD--SGEIVFDPKEIADAQWFRYDELPLLPPSG--TIARRLIEDTVA 254 (256)
T ss_pred EEEEEEEEec--CCcccCCcccEEEEEEECHHHCcccCCch--HHHHHHHHHHHH
Confidence 5667777654 34566677899999999999998875543 477777776654
No 45
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.1e-18 Score=133.74 Aligned_cols=106 Identities=27% Similarity=0.422 Sum_probs=79.9
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcce--eEEEEEEeeeccc---cce
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEF--VEVLAFRQSHRSF---FRK 200 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~--~~~l~~~~~~~~~---~~~ 200 (275)
+++++++.++++||+|++ ..+.|.||||++++||++.+||+||++||||+.+.. +..++.+...... ...
T Consensus 3 ~~~~v~~~~~~vLl~~r~-----~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (118)
T cd04690 3 AAALILVRDGRVLLVRKR-----GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDV 77 (118)
T ss_pred EEEEEEecCCeEEEEEEC-----CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEE
Confidence 567777878899999986 357899999999999999999999999999999877 7777665543221 223
Q ss_pred EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665 201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV 240 (275)
Q Consensus 201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 240 (275)
..++|++.... .+. ...|+.+++|++++++....+.
T Consensus 78 ~~~~f~~~~~~---~~~-~~~e~~~~~W~~~~e~~~~~~~ 113 (118)
T cd04690 78 RATVYVAELTG---EPV-PAAEIEEIRWVDYDDPADDRLA 113 (118)
T ss_pred EEEEEEEcccC---CcC-CCchhhccEEecHHHccccccC
Confidence 45566664432 222 4568899999999998665543
No 46
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.5e-18 Score=139.72 Aligned_cols=114 Identities=18% Similarity=0.277 Sum_probs=85.3
Q ss_pred EEEEEEEeCC---ceEEEEEEecCCCCCCCceeC-cceeccCCCCHHHHHHHHHHHHhCCCcc--eeEEEEEEeeecc--
Q 039665 125 GVGAFVMNNK---RELLVVQENNGALKGTGVWKL-PTGTIEEGEDICAAAVREVKEETGIDTE--FVEVLAFRQSHRS-- 196 (275)
Q Consensus 125 ~v~~vv~~~~---~~vLLv~r~~~~~~~~~~w~l-PgG~ve~gEs~~~aA~REl~EEtGl~~~--~~~~l~~~~~~~~-- 196 (275)
+|.++|+|.+ +++|+++|.......+|.|++ |||++++||++.+||+||++||||+.+. .+..++.......
T Consensus 4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~ 83 (144)
T cd04692 4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHI 83 (144)
T ss_pred EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecccc
Confidence 3778899976 899999998655557899999 5999999999999999999999999864 4455555443322
Q ss_pred ---ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCC
Q 039665 197 ---FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP 238 (275)
Q Consensus 197 ---~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 238 (275)
......++|++........+..+++|+.+++|++++++.++.
T Consensus 84 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 128 (144)
T cd04692 84 GKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred CCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHH
Confidence 112345677776543223445567899999999999998764
No 47
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=4.1e-18 Score=133.83 Aligned_cols=110 Identities=21% Similarity=0.363 Sum_probs=81.8
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc----ccceE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS----FFRKS 201 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~----~~~~~ 201 (275)
|.++++++ ++|||+|+.+ .+.|.+|||++++||++.+||+||++||||+++.....++....... ..+..
T Consensus 4 v~~vi~~~-~~vLl~~~~~-----~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
T cd04688 4 AAAIIIHN-GKLLVQKNPD-----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEI 77 (126)
T ss_pred EEEEEEEC-CEEEEEEeCC-----CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEE
Confidence 55666664 4999998763 57899999999999999999999999999999988888776543221 12345
Q ss_pred EEEEEEEEecCCccc-----cCCccccceEEEEeHhhHhcCCCcc
Q 039665 202 DLFFVCMLRPRNFHI-----QKQDSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 202 ~~~f~~~~~~~~~~~-----~~~~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
.++|.|......... ..++.|+.++.|++++++..++..+
T Consensus 78 ~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p 122 (126)
T cd04688 78 EFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP 122 (126)
T ss_pred EEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence 667777664332211 1245789999999999999876654
No 48
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.79 E-value=3.2e-18 Score=134.25 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=78.6
Q ss_pred eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc----ccc
Q 039665 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS----FFR 199 (275)
Q Consensus 124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~----~~~ 199 (275)
+.|+++|++ ++++||+++. ..+.|.+|||++++||++.+||+||++||||+++....+++....... ...
T Consensus 2 ~~~~~vi~~-~~~vLlv~~~-----~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 75 (125)
T cd04689 2 LRARAIVRA-GNKVLLARVI-----GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTH 75 (125)
T ss_pred eEEEEEEEe-CCEEEEEEec-----CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEE
Confidence 357777776 6799999986 346899999999999999999999999999999988888876543221 122
Q ss_pred eEEEEEEEEEecCCcc-ccCCccccceEEEEeHhhHhcC
Q 039665 200 KSDLFFVCMLRPRNFH-IQKQDSEIAAAQWMQAEDYAAQ 237 (275)
Q Consensus 200 ~~~~~f~~~~~~~~~~-~~~~~~E~~~~~Wv~~eel~~~ 237 (275)
...++|++........ ....++|+.+++|++++++...
T Consensus 76 ~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 114 (125)
T cd04689 76 EINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSLY 114 (125)
T ss_pred EEEEEEEEEcccccccCCccCccceEEEEEccHHHcccC
Confidence 3445666655422211 1234567899999999997643
No 49
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.78 E-value=2.3e-18 Score=135.80 Aligned_cols=112 Identities=29% Similarity=0.317 Sum_probs=84.9
Q ss_pred EEEEEEEeC--CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEee----eccc-
Q 039665 125 GVGAFVMNN--KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQS----HRSF- 197 (275)
Q Consensus 125 ~v~~vv~~~--~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~----~~~~- 197 (275)
.|.+++++. +++|||+||.+. .++.|.+|||+++.||++.+||+||++||||+.+.....+..... ....
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 79 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN 79 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCC
Confidence 367888887 899999999864 578999999999999999999999999999999877776664432 1111
Q ss_pred -cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665 198 -FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 198 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
.....++|+|.+.... ....++|+.+++|++++++.++....
T Consensus 80 ~~~~~~~~f~~~~~~~~--~~~~~~E~~~~~W~~~~e~~~~~~~~ 122 (129)
T cd04664 80 GRVWTEHPFAFHLPSDA--VVTLDWEHDAFEWVPPEEAAALLLWE 122 (129)
T ss_pred ceEEEEeEEEEEcCCCC--cccCCccccccEecCHHHHHHHHcCh
Confidence 2244567777654322 22355788999999999998876544
No 50
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.78 E-value=1.7e-18 Score=145.02 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=94.5
Q ss_pred eEEEEEEEeC-CceEEEEEEecCCCC----CCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecccc
Q 039665 124 VGVGAFVMNN-KRELLVVQENNGALK----GTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFF 198 (275)
Q Consensus 124 v~v~~vv~~~-~~~vLLv~r~~~~~~----~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~ 198 (275)
.+|++++++. +++|||++|+|.+.. .+..|+||||++|+||++++||+||++||||+.+..+..++.+...++..
T Consensus 45 ~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~~ 124 (185)
T TIGR00052 45 NAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGGV 124 (185)
T ss_pred CeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCCC
Confidence 3577888874 579999999976531 46799999999999999999999999999999999999888877777777
Q ss_pred ceEEEEEEEEEecCC--ccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 199 RKSDLFFVCMLRPRN--FHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 199 ~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
+...++|++...... .....+++|..++.|++++++.++.....
T Consensus 125 ~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~ 170 (185)
T TIGR00052 125 TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGK 170 (185)
T ss_pred cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCC
Confidence 788889999764321 11122456667899999999998865544
No 51
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.78 E-value=5.2e-18 Score=134.20 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=82.7
Q ss_pred cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK 200 (275)
Q Consensus 121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~ 200 (275)
++++.|+++++++ ++|||++|.+.+ ..+.|++|||++++||++.+||+||++||||+++....+++..... ....
T Consensus 11 ~~~~~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~--~~~~ 85 (130)
T cd04511 11 NPKIIVGCVPEWE-GKVLLCRRAIEP--RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP--HISQ 85 (130)
T ss_pred CCcEEEEEEEecC-CEEEEEEecCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC--CceE
Confidence 4566777777775 799999997644 5689999999999999999999999999999998776666655432 2345
Q ss_pred EEEEEEEEEecCCccccCCccccceEEEEeHhhHh
Q 039665 201 SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYA 235 (275)
Q Consensus 201 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~ 235 (275)
..++|+|.... ..+. ...|..+++|++++++.
T Consensus 86 ~~~~f~~~~~~--~~~~-~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 86 VYMFYRARLLD--LDFA-PGPESLEVRLFTEEEIP 117 (130)
T ss_pred EEEEEEEEEcC--Cccc-CCcchhceEEECHHHCC
Confidence 66778886643 2332 34678899999999996
No 52
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.78 E-value=2.1e-18 Score=135.92 Aligned_cols=118 Identities=26% Similarity=0.397 Sum_probs=84.4
Q ss_pred EEEEEEEeCCc---eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEe--eec--cc
Q 039665 125 GVGAFVMNNKR---ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ--SHR--SF 197 (275)
Q Consensus 125 ~v~~vv~~~~~---~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~--~~~--~~ 197 (275)
++++++++.++ ++||+|++. +.|.+|||++++||++.+||+||++||||+.+.....++.+. ... ..
T Consensus 4 ~~g~vi~~~~~~~~~vLl~~~~~------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 77 (130)
T cd03428 4 SAGAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRG 77 (130)
T ss_pred EEEEEEEEecCCCceEEEEEccC------CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccC
Confidence 57778877443 799998873 789999999999999999999999999999988777652221 111 12
Q ss_pred cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHH
Q 039665 198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQIC 253 (275)
Q Consensus 198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~ 253 (275)
.....++|++.... ...+..+ +|+.++.|++++++.++..... ++.+++.+
T Consensus 78 ~~~~~~~f~~~~~~-~~~~~~~-~E~~~~~W~~~~e~~~~~~~~~---~~~~~~~~ 128 (130)
T cd03428 78 KLKTVTYFLAELRP-DVEVKLS-EEHQDYRWLPYEEALKLLTYED---LKAVLDKA 128 (130)
T ss_pred cceEEEEEEEEeCC-CCccccc-cceeeEEeecHHHHHHHcCchh---HHHHHHHh
Confidence 34556777776652 2233334 7899999999999998765433 44444443
No 53
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.78 E-value=3.5e-18 Score=137.77 Aligned_cols=116 Identities=29% Similarity=0.517 Sum_probs=84.9
Q ss_pred cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc-c-
Q 039665 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF-F- 198 (275)
Q Consensus 121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~-~- 198 (275)
.+.++|++++...+ +|||+||...+ +.|.|.||||++|.||++.+||.||++||||+++..+++++++...... .
T Consensus 8 ~p~~~v~~~i~~~~-~iLLvrR~~~p--~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r~ 84 (145)
T COG1051 8 TPLVAVGALIVRNG-RILLVRRANEP--GAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPRG 84 (145)
T ss_pred CcceeeeEEEEeCC-EEEEEEecCCC--CCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCce
Confidence 45677888877754 99999999765 5689999999999999999999999999999999999999887765443 1
Q ss_pred ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665 199 RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV 240 (275)
Q Consensus 199 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 240 (275)
....++|++. .........+..+...+.|++++++..+..+
T Consensus 85 ~~v~~~~~~~-~~~g~~~~~~~~d~~~~~~~~~~~l~~~~~~ 125 (145)
T COG1051 85 HHVSFLFFAA-EPEGELLAGDGDDAAEVGWFPLDELPELPLP 125 (145)
T ss_pred eEEEEEEEEE-ecCCCcccCChhhHhhcceecHhHccccccc
Confidence 1222222221 1112122223347788999999999986443
No 54
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=4.4e-18 Score=134.88 Aligned_cols=107 Identities=23% Similarity=0.458 Sum_probs=77.5
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCc-ceeEEEEEEeeec-------c
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT-EFVEVLAFRQSHR-------S 196 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~-~~~~~l~~~~~~~-------~ 196 (275)
+|+++|++ +++|||+++++ .+.|.||||++++||++.+||+||++||||+.+ .....++.+.... .
T Consensus 2 ~~~~ii~~-~~~vLLv~~~~-----~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~ 75 (131)
T cd04686 2 AVRAIILQ-GDKILLLYTKR-----YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDAD 75 (131)
T ss_pred cEEEEEEE-CCEEEEEEEcC-----CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCc
Confidence 47788888 47999999874 357999999999999999999999999999987 4555665543211 1
Q ss_pred ccceEEEEEEEEEecCCccccCCcccc---ceEEEEeHhhHhcC
Q 039665 197 FFRKSDLFFVCMLRPRNFHIQKQDSEI---AAAQWMQAEDYAAQ 237 (275)
Q Consensus 197 ~~~~~~~~f~~~~~~~~~~~~~~~~E~---~~~~Wv~~eel~~~ 237 (275)
.++...++|+|.+..........+.|. ..++|++++++.+-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 76 IFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred eeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 123446788887764444444444343 46899999998764
No 55
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=5e-18 Score=136.58 Aligned_cols=114 Identities=25% Similarity=0.423 Sum_probs=82.2
Q ss_pred eEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCccee----EEEEEEeeecc---
Q 039665 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV----EVLAFRQSHRS--- 196 (275)
Q Consensus 124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~----~~l~~~~~~~~--- 196 (275)
++|+++++|.+++|||+||...+...+|.|.+|||++++||++.+||+||++||||+.+... .+++.....+.
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~ 81 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL 81 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence 35778889999999999998765457899999999999999999999999999999988753 55554432211
Q ss_pred ---c--cceEEEEEEEEEecC----CccccCCccccceEEEEeHhhHhcC
Q 039665 197 ---F--FRKSDLFFVCMLRPR----NFHIQKQDSEIAAAQWMQAEDYAAQ 237 (275)
Q Consensus 197 ---~--~~~~~~~f~~~~~~~----~~~~~~~~~E~~~~~Wv~~eel~~~ 237 (275)
. ......+|++..... ...+.++++|+.+++|++++++.++
T Consensus 82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 1 122223333322211 1133456689999999999998875
No 56
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=1.6e-17 Score=130.35 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=86.7
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEE
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLF 204 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 204 (275)
.+++++++.++++||++|...+. .+|.|+||||.+++||++.+||+||++||||+.+.....++...+.++......++
T Consensus 6 ~~~~ii~~~~~~vLl~~R~~~~~-~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~ 84 (128)
T TIGR00586 6 IAVGIIRNENGEIIITRRADGHM-FAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFW 84 (128)
T ss_pred EEEEEEECCCCEEEEEEEeCCCC-CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEE
Confidence 35566677778999999986654 67999999999999999999999999999999987776676666655554455556
Q ss_pred EEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc
Q 039665 205 FVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH 243 (275)
Q Consensus 205 f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~ 243 (275)
|.|.... ... ...+..++.|++++++.+++++...
T Consensus 85 ~~~~~~~--~~~--~~~~~~~~~W~~~~~l~~~~~p~~~ 119 (128)
T TIGR00586 85 LLERWEG--GPP--GKEGQPEEWWVLVGLLADDFFPAAN 119 (128)
T ss_pred EEEEEcC--CCc--CcccccccEEeCHHHCCccCCCCCC
Confidence 6554432 121 2345667899999999999887653
No 57
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.77 E-value=1e-17 Score=130.00 Aligned_cols=113 Identities=27% Similarity=0.404 Sum_probs=87.8
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF 205 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 205 (275)
+.++++++++++||++|.+.+ ..+|.|.||||+++.+|++.++|.||++||||+.+.....++...+.........++|
T Consensus 4 ~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAGK-HLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVF 82 (124)
T ss_pred EEEEEECCCCEEEEEEeCCCC-CCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEE
Confidence 445666777899999998666 4689999999999999999999999999999999887777776665555555555666
Q ss_pred EEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc
Q 039665 206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH 243 (275)
Q Consensus 206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~ 243 (275)
.+.... ... ...|..++.|++++++..++++..+
T Consensus 83 ~~~~~~--~~~--~~~e~~~~~W~~~~el~~~~~~~~~ 116 (124)
T cd03425 83 LVELWS--GEP--QLLEHQELRWVPPEELDDLDFPPAD 116 (124)
T ss_pred EEeeeC--CCc--ccccCceEEEeeHHHcccCCCCccc
Confidence 664432 221 2457788999999999999887664
No 58
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=4.9e-18 Score=134.49 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=74.9
Q ss_pred eCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEE---EEeeeccccceEEEEEEEE
Q 039665 132 NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLA---FRQSHRSFFRKSDLFFVCM 208 (275)
Q Consensus 132 ~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~---~~~~~~~~~~~~~~~f~~~ 208 (275)
+.+++|||++|... .+|.|.+|||++++||++.+||+||++||||+++..+.... ..............+|++.
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 87 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGF 87 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEE
Confidence 46789999999854 46899999999999999999999999999999986543322 2222111111223345554
Q ss_pred EecCCccccCCccccceEEEEeHhhHhcCCCcccch
Q 039665 209 LRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQ 244 (275)
Q Consensus 209 ~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~ 244 (275)
.... ... ..++|..+++|++++++.++......+
T Consensus 88 ~~~~-~~~-~~~~E~~~~~W~~~~e~~~~~~~~~~~ 121 (131)
T cd04695 88 VPPH-QEV-VLNHEHTEYRWCSFAEALELAPFPGQR 121 (131)
T ss_pred ecCC-Ccc-ccCchhcccEecCHHHHHHhcCChhHH
Confidence 4321 222 234789999999999999886654433
No 59
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.77 E-value=4.9e-18 Score=142.38 Aligned_cols=116 Identities=19% Similarity=0.303 Sum_probs=85.4
Q ss_pred eEEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCcceeEE-EEEEee-e---ccc
Q 039665 124 VGVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFVEV-LAFRQS-H---RSF 197 (275)
Q Consensus 124 v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~~~-l~~~~~-~---~~~ 197 (275)
.+|+++|++++++|||+||..+....+|.|.+| ||++++||++.+||+||++||||+++..... ++.+.. . ...
T Consensus 35 ~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 114 (184)
T PRK03759 35 LAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNGI 114 (184)
T ss_pred eEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCCc
Confidence 457788999999999999876555568899987 8999999999999999999999999864432 322211 1 111
Q ss_pred -cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 198 -FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 198 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
.....++|++... ..+.++++|+.+++|++++++.++.....
T Consensus 115 ~~~~~~~vf~~~~~---~~~~~~~~Ev~~~~W~~~~el~~~i~~~~ 157 (184)
T PRK03759 115 VENEVCPVFAARVT---SALQPNPDEVMDYQWVDPADLLRAVDATP 157 (184)
T ss_pred eeeEEEEEEEEEEC---CCCCCChhHeeeEEEECHHHHHHHHHhCC
Confidence 1234456777553 34556778999999999999988755443
No 60
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.77 E-value=9.8e-18 Score=131.35 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=80.0
Q ss_pred EEEEEEeCC---ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCccee-EEEEEEeeeccc----
Q 039665 126 VGAFVMNNK---RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV-EVLAFRQSHRSF---- 197 (275)
Q Consensus 126 v~~vv~~~~---~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~-~~l~~~~~~~~~---- 197 (275)
+++|+++.+ ++|||+++.+ .+.|.||||+++.||++.+||+||++||||+.+... ..++.+......
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~-----~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~ 77 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRR-----TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRP 77 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecC-----CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCC
Confidence 566777643 6899999873 278999999999999999999999999999998777 778776654432
Q ss_pred cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665 198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY 239 (275)
Q Consensus 198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 239 (275)
.....++|.+...... ...+..|+.+++|++++++.++..
T Consensus 78 ~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 78 PRCEVAVFPLEVTEEL--DEWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred ceEEEEEEEEEEeccc--cCCcccCceEEEEecHHHHHHhcC
Confidence 2345566666554322 222345678999999999987644
No 61
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.77 E-value=8.4e-18 Score=141.39 Aligned_cols=118 Identities=13% Similarity=0.040 Sum_probs=96.4
Q ss_pred eEEEEEEEeC-CceEEEEEEecCCC-----CCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc
Q 039665 124 VGVGAFVMNN-KRELLVVQENNGAL-----KGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF 197 (275)
Q Consensus 124 v~v~~vv~~~-~~~vLLv~r~~~~~-----~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~ 197 (275)
-+|++++++. +++|+|++|+|.+. .++..|++|+|.+|+| ++++||+||++||||+.+..+..++.+...++.
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~ 124 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG 124 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCcc
Confidence 3577788885 67999999998764 1567899999999976 699999999999999999999999988888888
Q ss_pred cceEEEEEEEEEecC--CccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 198 FRKSDLFFVCMLRPR--NFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 198 ~~~~~~~f~~~~~~~--~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
.+...++|++..... ......+++|..++.|+|++|+.++.....
T Consensus 125 s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~ 171 (191)
T PRK15009 125 VTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGE 171 (191)
T ss_pred cCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCC
Confidence 889999999976321 122233567888999999999998866544
No 62
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.76 E-value=4.9e-18 Score=139.89 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=86.1
Q ss_pred eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCcceeEEE-EEEeee--c-cc
Q 039665 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFVEVL-AFRQSH--R-SF 197 (275)
Q Consensus 123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l-~~~~~~--~-~~ 197 (275)
+.+|++++++++++|||+||.......+|.|.+| ||++++||++.+||+||++||||+.+....++ +..... . ..
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 109 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGG 109 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCC
Confidence 3457788999999999999987665678999997 89999999999999999999999998776664 322211 1 11
Q ss_pred --cceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665 198 --FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 198 --~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
.....++|.+... .....+.+|+.+++|++++++.++....
T Consensus 110 ~~~~~i~~~f~~~~~---~~~~~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 110 LVEHEIDHVFFARAD---VTLIPNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred ceeeEEEEEEEEEeC---CCCCCCccceeEEEEECHHHHHHHHHhC
Confidence 1123355555432 2334467899999999999999875544
No 63
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.1e-17 Score=128.78 Aligned_cols=104 Identities=26% Similarity=0.367 Sum_probs=78.2
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF 205 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 205 (275)
+++|+ ..++++||++|.+ +.|.+|||++++||++.+||.||++||||+.+..+..++.+.. .....++|
T Consensus 3 a~~i~-~~~~~vLlv~r~~------~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f 71 (112)
T cd04667 3 ATVIC-RRGGRVLLVRKSG------SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVF 71 (112)
T ss_pred eEEEE-ecCCEEEEEEcCC------CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEE
Confidence 33444 4467999999862 7899999999999999999999999999999877776665432 12344667
Q ss_pred EEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
+|.+.. .....++.|+.+++|++++++.++..+..
T Consensus 72 ~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 106 (112)
T cd04667 72 VASVPP--SAQPKPSNEIADCRWLSLDALGDLNASAA 106 (112)
T ss_pred EEEcCC--cCCCCCchheeEEEEecHHHhhhcccchh
Confidence 765432 22233567889999999999999877654
No 64
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.73 E-value=8.2e-17 Score=135.34 Aligned_cols=116 Identities=22% Similarity=0.196 Sum_probs=87.8
Q ss_pred eeEEEEEEEe--CCceEEEEEEecCCCCCCCceeCcceeccCC-CCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc
Q 039665 123 RVGVGAFVMN--NKRELLVVQENNGALKGTGVWKLPTGTIEEG-EDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR 199 (275)
Q Consensus 123 ~v~v~~vv~~--~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~g-Es~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~ 199 (275)
+.+++++++. .++.+||+||.+......|.|+||||++|++ |++.+||+||++||||+.+..+..++.........+
T Consensus 30 ~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~ 109 (190)
T PRK10707 30 RQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTG 109 (190)
T ss_pred CCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCC
Confidence 3345555553 4568999987765544678999999999985 679999999999999999999999988775555555
Q ss_pred eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665 200 KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY 239 (275)
Q Consensus 200 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 239 (275)
.....|++.+.... ....+++|..++.|+|++++.++..
T Consensus 110 ~~~~~~v~~~~~~~-~~~~d~~Ev~~v~~vpl~e~~~~~~ 148 (190)
T PRK10707 110 YQVTPVVGIIPPDL-PYRANEDEVAAVFEMPLAEALHLGR 148 (190)
T ss_pred cEEEEEEEEECCCC-CCCCChhhhheEEEEeHHHHhCccc
Confidence 55566666544322 4455778999999999999988753
No 65
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=7.6e-17 Score=128.17 Aligned_cols=113 Identities=22% Similarity=0.310 Sum_probs=80.5
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCc-ceeEEEEEEe----eeccccc
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT-EFVEVLAFRQ----SHRSFFR 199 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~-~~~~~l~~~~----~~~~~~~ 199 (275)
++.+++++.+++|||+++.+.....++.|.+|||++++||++.+||.||++||||+.+ .....+.... .......
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~ 81 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR 81 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccce
Confidence 4788999999999999987543235689999999999999999999999999999998 5444443222 1222233
Q ss_pred eEEEEEEEEEecCCcc-cc--CC-ccccceEEEEeHhhHhcC
Q 039665 200 KSDLFFVCMLRPRNFH-IQ--KQ-DSEIAAAQWMQAEDYAAQ 237 (275)
Q Consensus 200 ~~~~~f~~~~~~~~~~-~~--~~-~~E~~~~~Wv~~eel~~~ 237 (275)
...++|+|........ .. .. ..++..++|++++++.+.
T Consensus 82 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred eeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 4567888866432111 11 11 134568999999999886
No 66
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.72 E-value=7.8e-17 Score=131.85 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=83.5
Q ss_pred cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCcceeE--EEEEEeeecc-
Q 039665 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFVE--VLAFRQSHRS- 196 (275)
Q Consensus 121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~~--~l~~~~~~~~- 196 (275)
.|+ +|+++|+|.+++|||+||.......+|.|++| ||+++.|| .+||+||++||||+.+.... .++.+.....
T Consensus 26 ~h~-~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~ 102 (158)
T TIGR02150 26 LHR-AFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARD 102 (158)
T ss_pred eEE-EEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEec
Confidence 444 47788999999999999987665678999997 79999999 49999999999999987654 2332221111
Q ss_pred --ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665 197 --FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 197 --~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
......++|.|... . .+.++++|+.+++|++++|+.++....
T Consensus 103 ~~g~~~~~~~f~~~~~--~-~~~~~~~Ev~~~~W~~~~el~~~~~~~ 146 (158)
T TIGR02150 103 AWGEHELCPVFFARAP--V-PLNPNPEEVAEYRWVSLEELKEILKAP 146 (158)
T ss_pred CCCcEEEEEEEEEecC--C-cccCChhHeeeEEEeCHHHHHHHHhcC
Confidence 11234455655432 2 455567799999999999998875543
No 67
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.71 E-value=1.7e-16 Score=144.94 Aligned_cols=114 Identities=25% Similarity=0.380 Sum_probs=80.9
Q ss_pred cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEe-----eec
Q 039665 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQ-----SHR 195 (275)
Q Consensus 121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~-----~~~ 195 (275)
...++|.++|++ +++|||++|...+ ++|.|.+|||++++||++.+||+||++||||+++....+.+... ..+
T Consensus 201 ~~~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p 277 (340)
T PRK05379 201 PTFVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHP 277 (340)
T ss_pred CcceEEEEEEEE-CCEEEEEEecCCC--CCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCC
Confidence 345778777776 6799999998644 57999999999999999999999999999999876554433221 111
Q ss_pred c---ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcC
Q 039665 196 S---FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQ 237 (275)
Q Consensus 196 ~---~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~ 237 (275)
. ......++|++.+...........+|..+++|++++++..+
T Consensus 278 ~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 278 GRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhh
Confidence 1 12244567777654322111124568899999999999875
No 68
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.71 E-value=2.9e-16 Score=120.95 Aligned_cols=113 Identities=27% Similarity=0.487 Sum_probs=83.8
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeecc--ccceEE
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRS--FFRKSD 202 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~--~~~~~~ 202 (275)
++++++++.++++||++|.+. .++.|.+|||+++.||++.++|+||++||+|+.+.....++.+..... ......
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVV 78 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEE
Confidence 467888888789999999864 468999999999999999999999999999998875555554443333 234555
Q ss_pred EEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc
Q 039665 203 LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 203 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
.+|.|........ ..++.|..+.+|++++++.++....
T Consensus 79 ~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~~l~~~~~~~ 116 (123)
T cd02883 79 FVFLARLVGGEPT-LLPPDEISEVRWVTLDELPALALSP 116 (123)
T ss_pred EEEEEEeCCCCcC-CCCCCccceEEEEcHHHCccccccc
Confidence 5666654432221 2355778889999999999865443
No 69
>PLN03143 nudix hydrolase; Provisional
Probab=99.68 E-value=1.5e-15 Score=134.61 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=81.8
Q ss_pred EEEEEEE-eCCce--EEEEEEecCCCCCCCceeCcceeccC-CCCHHHHHHHHHHHHhCCCcc--eeEEEE---------
Q 039665 125 GVGAFVM-NNKRE--LLVVQENNGALKGTGVWKLPTGTIEE-GEDICAAAVREVKEETGIDTE--FVEVLA--------- 189 (275)
Q Consensus 125 ~v~~vv~-~~~~~--vLLv~r~~~~~~~~~~w~lPgG~ve~-gEs~~~aA~REl~EEtGl~~~--~~~~l~--------- 189 (275)
+|+++++ +.+++ ++|++|+|.+. +...|+||||.+|+ +|++.+||+||++||||+.+. .+..+.
T Consensus 130 aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~ 208 (291)
T PLN03143 130 AVAVLILLESEGETYAVLTEQVRVPV-GKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGC 208 (291)
T ss_pred eEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCc
Confidence 4555554 54444 99999997654 66799999999997 489999999999999999864 343342
Q ss_pred EEeeeccccceEEEEEEEEEecCCc---------cccCCccccceEEEEeHhhHhcCC
Q 039665 190 FRQSHRSFFRKSDLFFVCMLRPRNF---------HIQKQDSEIAAAQWMQAEDYAAQP 238 (275)
Q Consensus 190 ~~~~~~~~~~~~~~~f~~~~~~~~~---------~~~~~~~E~~~~~Wv~~eel~~~~ 238 (275)
.++..++..+...++|++....... ....++.|..++.|++++++.++.
T Consensus 209 ~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~ 266 (291)
T PLN03143 209 RMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMT 266 (291)
T ss_pred eEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHH
Confidence 4556666667777888875432211 112255688899999999998875
No 70
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.68 E-value=3e-16 Score=124.57 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=70.2
Q ss_pred CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEE-----Eeeec-------cccceE
Q 039665 134 KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAF-----RQSHR-------SFFRKS 201 (275)
Q Consensus 134 ~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~-----~~~~~-------~~~~~~ 201 (275)
++++||+|+..+ ..+.|.||||++++||++.+||+||++||||+.+.. .+++. +.... ...+..
T Consensus 12 ~~~~Llvk~~~~---~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (132)
T cd04661 12 DTLVLLVQQKVG---SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAK 87 (132)
T ss_pred CcEEEEEEeecC---CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccE
Confidence 568999998743 258999999999999999999999999999998764 23322 11111 112245
Q ss_pred EEEEEEEEecCCccccCCccccceEEEEeHhhHhcCC
Q 039665 202 DLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQP 238 (275)
Q Consensus 202 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 238 (275)
.++|.|... ++.+. ...|+.+++|++++|+.++.
T Consensus 88 ~~~f~~~~~--~g~~~-~~~e~~~~~W~~~~el~~~l 121 (132)
T cd04661 88 VFFFKARYM--SGQFE-LSQNQVDFKWLAKEELQKYL 121 (132)
T ss_pred EEEEEEEEe--cCccc-cCCCcceeEecCHHHHHhhc
Confidence 567777554 33333 24788999999999999864
No 71
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.67 E-value=3.4e-16 Score=130.69 Aligned_cols=112 Identities=16% Similarity=0.255 Sum_probs=81.8
Q ss_pred EEEEeCC--ceEEEEEEecCCCCCCCce-eCcceeccCCCCHHHHHHHHHHHHhCCCcceeE---EEEEEeeec---c--
Q 039665 128 AFVMNNK--RELLVVQENNGALKGTGVW-KLPTGTIEEGEDICAAAVREVKEETGIDTEFVE---VLAFRQSHR---S-- 196 (275)
Q Consensus 128 ~vv~~~~--~~vLLv~r~~~~~~~~~~w-~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~---~l~~~~~~~---~-- 196 (275)
+++.|.+ ++||+.||...+...+|.| .+|||++++||++.+||+||++||||+.+.... .++.+.... .
T Consensus 39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~ 118 (180)
T cd03676 39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGG 118 (180)
T ss_pred EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCc
Confidence 4566765 8999999998887789999 599999999999999999999999999987543 333222111 1
Q ss_pred ccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCc
Q 039665 197 FFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYV 240 (275)
Q Consensus 197 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~ 240 (275)
......++|.+.+. ....+.++++|+.++.|++++|+.++...
T Consensus 119 ~~~e~~~~f~~~~~-~~~~~~~~~~Ev~~~~~~~~~el~~~l~~ 161 (180)
T cd03676 119 LQPEVEYVYDLELP-PDFIPAPQDGEVESFRLLTIDEVLRALKE 161 (180)
T ss_pred EeeeEEEEEEEEcC-CCCeeCCCCCcEeEEEEECHHHHHHHHHc
Confidence 12244555655442 22234557789999999999999877443
No 72
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.67 E-value=1.2e-15 Score=123.73 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=90.5
Q ss_pred eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEE
Q 039665 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSD 202 (275)
Q Consensus 123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 202 (275)
...|.++++++ +++||+++++ ..|++|||++|+||++.+||+||++||||+.+..+..++.+...........
T Consensus 24 ~~~V~ii~~~~-~~~LL~~~~~------~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~ 96 (156)
T TIGR02705 24 PNHVLVIPRYK-DQWLLTEHKR------RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVK 96 (156)
T ss_pred CCEEEEEEEEC-CEEEEEEEcC------CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEE
Confidence 34566666664 4899998873 3599999999999999999999999999999999999998877776666777
Q ss_pred EEEEEEEecCCccccCCccccceEE-EEeHhhHhcCCCcccc-h--HHHHHHHHHHhhc
Q 039665 203 LFFVCMLRPRNFHIQKQDSEIAAAQ-WMQAEDYAAQPYVLKH-Q--MFNYICQICLTKS 257 (275)
Q Consensus 203 ~~f~~~~~~~~~~~~~~~~E~~~~~-Wv~~eel~~~~~~~~~-~--~~~~~~~~~~~~~ 257 (275)
++|+|..... . ..+|..+.. +++++++.++...... . +-...+..|++.+
T Consensus 97 ~vf~A~~~~~--~---~~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~ 150 (156)
T TIGR02705 97 DVYFAEVSAL--E---SKDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVLLKCLERA 150 (156)
T ss_pred EEEEEEEecc--c---cCCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHHHHHHHHH
Confidence 8888876532 2 124545555 7999999887655431 1 3344555666654
No 73
>PRK08999 hypothetical protein; Provisional
Probab=99.65 E-value=3.4e-15 Score=135.02 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=85.8
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF 205 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 205 (275)
+.+++++.+++|||+||...+. ++|.|+||||++++||++.+||.||++||||+.+.....+....+.+.......++|
T Consensus 8 ~~~vi~~~~~~vLL~kR~~~~~-~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y 86 (312)
T PRK08999 8 AAGVIRDADGRILLARRPEGKH-QGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVR 86 (312)
T ss_pred EEEEEECCCCeEEEEEecCCCC-CCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEE
Confidence 4456667778999999976553 689999999999999999999999999999999877666666665555545555566
Q ss_pred EEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc
Q 039665 206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH 243 (275)
Q Consensus 206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~ 243 (275)
.+... ... ....|..+++|++++++.+++++...
T Consensus 87 ~~~~~--~~~--~~~~e~~~~~Wv~~~el~~~~~~~~~ 120 (312)
T PRK08999 87 RVTAW--QGE--PHGREGQPLAWVAPDELAVYPFPPAN 120 (312)
T ss_pred EEEEe--cCc--ccCccCCccEEecHHHcccCCCCcch
Confidence 55432 112 23456778899999999998887653
No 74
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.63 E-value=6.4e-15 Score=114.60 Aligned_cols=100 Identities=24% Similarity=0.275 Sum_probs=77.3
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF 205 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 205 (275)
|.+++++ ++++||++++ .+.|++|||++++||++.+||+||++||||+.+..+..++.+...........++|
T Consensus 3 v~vi~~~-~~~vLl~~~~------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y 75 (118)
T cd04665 3 VLVICFY-DDGLLLVRHK------DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVY 75 (118)
T ss_pred EEEEEEE-CCEEEEEEeC------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEE
Confidence 5556666 4789999886 25799999999999999999999999999999998999987765554445566777
Q ss_pred EEEEecCCccccCCccccceEEEEeHhhH
Q 039665 206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDY 234 (275)
Q Consensus 206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel 234 (275)
++...... ......|+..+.|++.+..
T Consensus 76 ~a~~~~~~--~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 76 PAVSAQLE--EKASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEEEecc--cccccccccCcEEeccCCc
Confidence 77655322 2235688999999987654
No 75
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.63 E-value=8.5e-15 Score=114.44 Aligned_cols=105 Identities=24% Similarity=0.307 Sum_probs=67.2
Q ss_pred EEEEEEEe---CCceEEEEEEecCC--CCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccc
Q 039665 125 GVGAFVMN---NKRELLVVQENNGA--LKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFR 199 (275)
Q Consensus 125 ~v~~vv~~---~~~~vLLv~r~~~~--~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~ 199 (275)
++|+|+++ +..+|||++|.... ....+.|++|||+++.||++.+||+||++||||+.+. ..++..... ....+
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~-~~~~~ 79 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSL-KQSGG 79 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEE-ECCCC
Confidence 46677776 22469999874220 1246889999999999999999999999999999876 222222111 12223
Q ss_pred eEEEEEEEEEec--------------CCccccCC-ccccceEEEEeH
Q 039665 200 KSDLFFVCMLRP--------------RNFHIQKQ-DSEIAAAQWMQA 231 (275)
Q Consensus 200 ~~~~~f~~~~~~--------------~~~~~~~~-~~E~~~~~Wv~~ 231 (275)
...++|++.... .+++.... .+|..+++|+++
T Consensus 80 ~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 80 KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence 345555554321 12233333 578888999873
No 76
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=1.2e-14 Score=112.95 Aligned_cols=56 Identities=38% Similarity=0.485 Sum_probs=44.1
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcce
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEF 184 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~ 184 (275)
+++++...+ .+||++|...+ ..+.|.||||++++||++.+||.||++||||+++..
T Consensus 7 av~vl~~~~-~~lL~~r~~~~--~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 7 VVALLPVDD-GLLVIRRGIEP--GRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred EEEEEEECC-CEEEEEeecCC--CCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 334444444 47777776443 578999999999999999999999999999998763
No 77
>PLN02709 nudix hydrolase
Probab=99.59 E-value=2e-14 Score=122.53 Aligned_cols=104 Identities=19% Similarity=0.249 Sum_probs=83.6
Q ss_pred ceEEEEEEecCCCCCCCceeCcceeccCC-CCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEEEEec-C
Q 039665 135 RELLVVQENNGALKGTGVWKLPTGTIEEG-EDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVCMLRP-R 212 (275)
Q Consensus 135 ~~vLLv~r~~~~~~~~~~w~lPgG~ve~g-Es~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~-~ 212 (275)
.+|||++|.......+|.|.||||++|++ +++.+||+||++||+|+.....++++.........+....-|++.+.. .
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~ 130 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK 130 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence 47999999876545789999999999997 478999999999999999998999988776665556666667766643 1
Q ss_pred CccccCCccccceEEEEeHhhHhcCC
Q 039665 213 NFHIQKQDSEIAAAQWMQAEDYAAQP 238 (275)
Q Consensus 213 ~~~~~~~~~E~~~~~Wv~~eel~~~~ 238 (275)
.....++++|+.++.|+|+++|.+..
T Consensus 131 ~~~~~~np~EV~~vf~vPL~~ll~~~ 156 (222)
T PLN02709 131 AFKPLPNPAEVEEIFDVPLEMFLKDK 156 (222)
T ss_pred CccccCChhhhheeEEecHHHHhCCc
Confidence 23444678899999999999998754
No 78
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.59 E-value=3.4e-15 Score=129.94 Aligned_cols=129 Identities=21% Similarity=0.262 Sum_probs=96.0
Q ss_pred CCCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc
Q 039665 118 ANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF 197 (275)
Q Consensus 118 ~~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~ 197 (275)
.+++.-.+|.++|.+.+ ++||.++.++. +|.+.+-+|.||+|||+++|++||++||+|++++.+.+++...+.+..
T Consensus 139 ~fPR~dP~vIv~v~~~~-~ilLa~~~~h~---~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWPfP~ 214 (279)
T COG2816 139 HFPRIDPCVIVAVIRGD-EILLARHPRHF---PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPH 214 (279)
T ss_pred cCCCCCCeEEEEEecCC-ceeecCCCCCC---CcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCCCch
Confidence 34455556666666654 48888887653 799999999999999999999999999999999999999877765543
Q ss_pred cceEEEEEEEEEecCCccccCCccccceEEEEeHhh-HhcCCCc--ccchHHHHHHHHHH
Q 039665 198 FRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAED-YAAQPYV--LKHQMFNYICQICL 254 (275)
Q Consensus 198 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~ee-l~~~~~~--~~~~~~~~~~~~~~ 254 (275)
..++-|.+.+ .+++++.+..|+.+++|++.+| +..++-. ..+.++...+..+-
T Consensus 215 --SLMigf~aey--~sgeI~~d~~Eleda~WFs~~evl~~L~~~~~~~~~li~~~~~~ia 270 (279)
T COG2816 215 --SLMLGFMAEY--DSGEITPDEGELEDARWFSRDEVLPALPPDGTIARRLIEPTLAAIA 270 (279)
T ss_pred --hhhhhheeee--ccccccCCcchhhhccccCHhHHhhhcCCCCCcccccccchHHHHH
Confidence 4445566644 4567888899999999999999 5666542 33344444444333
No 79
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.58 E-value=2.6e-14 Score=124.27 Aligned_cols=136 Identities=22% Similarity=0.256 Sum_probs=90.5
Q ss_pred CCCCcceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCC-----------------HHHHHHHHHHHHh
Q 039665 117 PANASHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGED-----------------ICAAAVREVKEET 178 (275)
Q Consensus 117 p~~~~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs-----------------~~~aA~REl~EEt 178 (275)
+.+..|+. +.++|+|.+|++||+||...+...+|.|+.. +|++..||+ ..+||+|||+|||
T Consensus 51 ~~gl~Hra-~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EEl 129 (247)
T PLN02552 51 PRGLLHRA-FSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHEL 129 (247)
T ss_pred CCCceEEE-EEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHh
Confidence 34445664 7789999999999999998888889999776 455554422 6789999999999
Q ss_pred CCCcce-----eEEEEEEeeecccc-----------ceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcc-
Q 039665 179 GIDTEF-----VEVLAFRQSHRSFF-----------RKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVL- 241 (275)
Q Consensus 179 Gl~~~~-----~~~l~~~~~~~~~~-----------~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~- 241 (275)
||.+.. +.+++.+....... ...+++|+. ......++.++++|+.+++|++++|+.++....
T Consensus 130 GI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~~ 208 (247)
T PLN02552 130 GIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEMMRKES 208 (247)
T ss_pred CCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHHHhhcC
Confidence 998643 44454332222111 123333332 222234677888999999999999999874311
Q ss_pred ---cchHHHHHHHHHH
Q 039665 242 ---KHQMFNYICQICL 254 (275)
Q Consensus 242 ---~~~~~~~~~~~~~ 254 (275)
-.+.++.+++.++
T Consensus 209 ~~~~tpw~~~~~~~~l 224 (247)
T PLN02552 209 GLKLSPWFRLIVDNFL 224 (247)
T ss_pred CcccCHHHHHHHHHHH
Confidence 1335666665554
No 80
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.54 E-value=1e-13 Score=108.71 Aligned_cols=106 Identities=23% Similarity=0.316 Sum_probs=62.6
Q ss_pred EEEEEEeCCc--eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeE-EEEEEeeeccccceEE
Q 039665 126 VGAFVMNNKR--ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVE-VLAFRQSHRSFFRKSD 202 (275)
Q Consensus 126 v~~vv~~~~~--~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~-~l~~~~~~~~~~~~~~ 202 (275)
|.+++.+.++ +||+.+.. . +.|+||||.+++||++.+||+||++||||+.+.... .++.........+...
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~-----~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHP-----L-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFW 76 (126)
T ss_pred EEEEEEeCCceEEEEEEEcC-----C-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEE
Confidence 4456666544 56665543 1 459999999999999999999999999999872221 1222221111123344
Q ss_pred EEEEEEEec---CCc--cccCCccccceEEEEeHhhHhcC
Q 039665 203 LFFVCMLRP---RNF--HIQKQDSEIAAAQWMQAEDYAAQ 237 (275)
Q Consensus 203 ~~f~~~~~~---~~~--~~~~~~~E~~~~~Wv~~eel~~~ 237 (275)
+++++.... ... ....++.+...+.|++++++...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~~ 116 (126)
T cd04663 77 HLTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLDE 116 (126)
T ss_pred EEEEEEecCCCcccccCcccCCCCceEEEEEEcccccccc
Confidence 445454421 111 11222334445669999998543
No 81
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.51 E-value=4.3e-15 Score=129.70 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=79.1
Q ss_pred ceeEEEEEEEeCCc-eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665 122 HRVGVGAFVMNNKR-ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK 200 (275)
Q Consensus 122 ~~v~v~~vv~~~~~-~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~ 200 (275)
.-..|..++++.++ +.||.|+++ + .+|+|..++|.+|+||++++||+||++||||++++.+.+.....+. .+..
T Consensus 186 ~dPvVIm~li~~d~~~~LL~R~~r-~--~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP--~~p~ 260 (345)
T KOG3084|consen 186 TDPVVIMLLIDHDGKHALLGRQKR-Y--PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWP--LMPQ 260 (345)
T ss_pred CCCeEEEEEEcCCCCEeeeecccC-C--CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCC--CCch
Confidence 33456677788665 555555443 3 4689999999999999999999999999999999988876655443 1223
Q ss_pred EEEEEEEEEecCCccccCCcc-ccceEEEEeHhhHhc
Q 039665 201 SDLFFVCMLRPRNFHIQKQDS-EIAAAQWMQAEDYAA 236 (275)
Q Consensus 201 ~~~~f~~~~~~~~~~~~~~~~-E~~~~~Wv~~eel~~ 236 (275)
+.+++.+.+....+.++.+.+ |..+++|++.+|+.+
T Consensus 261 SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~ 297 (345)
T KOG3084|consen 261 SLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKS 297 (345)
T ss_pred HHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHH
Confidence 323322222333367777776 999999999999864
No 82
>PLN02791 Nudix hydrolase homolog
Probab=99.47 E-value=3.8e-13 Score=132.57 Aligned_cols=116 Identities=23% Similarity=0.338 Sum_probs=86.7
Q ss_pred cceeEEEEEEEeC-CceEEEEEEecCCCCCCCceeC-cceeccCCCCHHHHHHHHHHHHhCCCcc--eeEEEEEEee---
Q 039665 121 SHRVGVGAFVMNN-KRELLVVQENNGALKGTGVWKL-PTGTIEEGEDICAAAVREVKEETGIDTE--FVEVLAFRQS--- 193 (275)
Q Consensus 121 ~~~v~v~~vv~~~-~~~vLLv~r~~~~~~~~~~w~l-PgG~ve~gEs~~~aA~REl~EEtGl~~~--~~~~l~~~~~--- 193 (275)
.|+ ++.++|+|. +++|||+||...+...+|.|++ |||+++.||+..+||+||++||+||.+. .+..++.+..
T Consensus 31 ~Hr-AvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~ 109 (770)
T PLN02791 31 YHR-AVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECV 109 (770)
T ss_pred ceE-EEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEee
Confidence 455 477889995 6899999999888889999999 7999999999999999999999999853 3445554321
Q ss_pred -eccc--cceEEEEEEEEEecC--CccccCCccccceEEEEeHhhHhcC
Q 039665 194 -HRSF--FRKSDLFFVCMLRPR--NFHIQKQDSEIAAAQWMQAEDYAAQ 237 (275)
Q Consensus 194 -~~~~--~~~~~~~f~~~~~~~--~~~~~~~~~E~~~~~Wv~~eel~~~ 237 (275)
.... .+...++|++..... ..++.++++|+.+++|++++|+.++
T Consensus 110 ~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~ 158 (770)
T PLN02791 110 INDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSA 158 (770)
T ss_pred ccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHH
Confidence 1111 124456666643211 1246678899999999999999855
No 83
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.44 E-value=1.9e-12 Score=108.02 Aligned_cols=52 Identities=25% Similarity=0.464 Sum_probs=41.6
Q ss_pred EEEEEEeCC---ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCc
Q 039665 126 VGAFVMNNK---RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDT 182 (275)
Q Consensus 126 v~~vv~~~~---~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~ 182 (275)
.++++.+.. -+||+++|. ..+.|.||||++++||++.+||+||++||||+.+
T Consensus 37 ~~~i~~~~~~~~l~vLl~~r~-----~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 37 DGSIHPKSGKPILQFVAIKRP-----DSGEWAIPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred CEEEEecCCCCeeEEEEEEeC-----CCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 344555532 368888886 3588999999999999999999999999997653
No 84
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.40 E-value=1.2e-12 Score=102.63 Aligned_cols=128 Identities=21% Similarity=0.300 Sum_probs=82.5
Q ss_pred ceeEEEEEEEeCC-c--eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccc-
Q 039665 122 HRVGVGAFVMNNK-R--ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSF- 197 (275)
Q Consensus 122 ~~v~v~~vv~~~~-~--~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~- 197 (275)
.+..+++|++..+ . +|||+.-.++ +..|-+|+|++|++|+..+||+||++||.|+......+++.+......
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~ 83 (145)
T KOG2839|consen 8 FRLVAGCICYRSDKEKIEVLLVSSSKK----PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKK 83 (145)
T ss_pred cEEEEEeeeeeecCcceEEEEEecCCC----CCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChh
Confidence 3455777787733 3 8999998753 467999999999999999999999999999998888855544422221
Q ss_pred -cce-EEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhh
Q 039665 198 -FRK-SDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTK 256 (275)
Q Consensus 198 -~~~-~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~ 256 (275)
.+. ..+.|.......-....-...|..+.+|+.++|..+... +..++..+..+++.
T Consensus 84 ~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~---~~~m~~al~e~~~~ 141 (145)
T KOG2839|consen 84 HRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQ---HKWMKAALEEFLQF 141 (145)
T ss_pred hcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHh---hHHHHHHHHHHHHH
Confidence 111 112222222111111111234688999999999887644 33455555554443
No 85
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.40 E-value=6.6e-12 Score=99.17 Aligned_cols=112 Identities=28% Similarity=0.468 Sum_probs=72.1
Q ss_pred EEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHH-HHHHHHHHHhCCCcc--eeEEEEEEeeeccccc--
Q 039665 126 VGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICA-AAVREVKEETGIDTE--FVEVLAFRQSHRSFFR-- 199 (275)
Q Consensus 126 v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~-aA~REl~EEtGl~~~--~~~~l~~~~~~~~~~~-- 199 (275)
+.+++.... +++|++++.... +.|.||||++++||++.+ ||+||++||||+.+. ....++.+........
T Consensus 14 ~~~~~~~~~~~~vl~~~~~~~~----~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
T COG0494 14 VAVLVGRDGPGEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSV 89 (161)
T ss_pred EEEEEecCCCCEEeEEEccccC----CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccc
Confidence 334444433 788998887432 699999999999999888 999999999999988 5666665554443321
Q ss_pred --eE-EEEEEEEEecCC-ccccCC---ccccceEEEEeHhhHhcCCCcc
Q 039665 200 --KS-DLFFVCMLRPRN-FHIQKQ---DSEIAAAQWMQAEDYAAQPYVL 241 (275)
Q Consensus 200 --~~-~~~f~~~~~~~~-~~~~~~---~~E~~~~~Wv~~eel~~~~~~~ 241 (275)
.. ..++.+...... ..+... ..|...+.|++++++.......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 138 (161)
T COG0494 90 GGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE 138 (161)
T ss_pred cceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccccc
Confidence 11 122222211111 111111 2578899999999988875543
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.32 E-value=2.4e-11 Score=99.62 Aligned_cols=101 Identities=24% Similarity=0.289 Sum_probs=70.8
Q ss_pred CceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCccee--EEEEEEeeeccccceEEEEEEEEEec
Q 039665 134 KRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFV--EVLAFRQSHRSFFRKSDLFFVCMLRP 211 (275)
Q Consensus 134 ~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~--~~l~~~~~~~~~~~~~~~~f~~~~~~ 211 (275)
.-.++|++|.|.+. ++-..+||+|.+|.||++..||+|||+||||+.-... ....+..+ +..+......++.++.
T Consensus 87 ~~~ivL~kQfRpP~-Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DP--Gltn~~~~iv~v~idg 163 (225)
T KOG3041|consen 87 KPYIVLVKQFRPPT-GKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDP--GLTNCNLCIVVVDIDG 163 (225)
T ss_pred cEEEEEEEeecCCC-CcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCC--CCCCCceEEEEEEecC
Confidence 34699999997764 8889999999999999999999999999999984333 23334444 3333333333333332
Q ss_pred C---Cc--cccCCccccceEEEEeHhhHhcC
Q 039665 212 R---NF--HIQKQDSEIAAAQWMQAEDYAAQ 237 (275)
Q Consensus 212 ~---~~--~~~~~~~E~~~~~Wv~~eel~~~ 237 (275)
. .. ...+++.|..++.-+++.+|.+.
T Consensus 164 ~~pEnqrp~q~ledgEfIev~~i~~~~L~~~ 194 (225)
T KOG3041|consen 164 DVPENQRPVQQLEDGEFIEVFLIPLSELWRE 194 (225)
T ss_pred CCccccCccccCCCCceEEEEEeeHHHHHHH
Confidence 1 11 22345679999999999988754
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.29 E-value=7.7e-11 Score=90.66 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=76.7
Q ss_pred EEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEE
Q 039665 128 AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVC 207 (275)
Q Consensus 128 ~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~ 207 (275)
++++..++++||.||...+. ++|+|+||+|.++.+|+..++..||+.||.++ ....++.+.+.++++.....+|.|
T Consensus 7 ~~ii~~~~~~ll~kR~~~gl-~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~ 82 (118)
T cd03431 7 VVVIRNDGRVLLEKRPEKGL-LAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLA 82 (118)
T ss_pred EEEEecCCeEEEEECCCCCC-CCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEE
Confidence 34445578999999976554 78999999999999999999999999998775 233355666767776666677776
Q ss_pred EEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 208 MLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 208 ~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
..... . .+..++.|++++++..++++..
T Consensus 83 ~~~~~--~-----~~~~~~~W~~~eel~~~~~p~~ 110 (118)
T cd03431 83 RLEGD--L-----LAPDEGRWVPLEELDEYALPTV 110 (118)
T ss_pred EEeCC--C-----cCccccEEccHHHHhhCCCCHH
Confidence 55321 1 2345679999999999877643
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.11 E-value=3.4e-10 Score=95.61 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=83.9
Q ss_pred EEEEEEEeC-C--ceEEEEEEecCCCCCCCceeCcceeccCCC-CHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccce
Q 039665 125 GVGAFVMNN-K--RELLVVQENNGALKGTGVWKLPTGTIEEGE-DICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRK 200 (275)
Q Consensus 125 ~v~~vv~~~-~--~~vLLv~r~~~~~~~~~~w~lPgG~ve~gE-s~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~ 200 (275)
+|.+.+++. + -+|||.||.+.-...+|.-.||||..|+.+ +-..+|.||.+||.|++.+...+++.........+.
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~ 124 (246)
T KOG3069|consen 45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGW 124 (246)
T ss_pred cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCc
Confidence 344444553 2 479999998877778899999999999864 677899999999999999888888766655444333
Q ss_pred EEEEEEEEEecCC--ccccCCccccceEEEEeHhhHhcCCCc
Q 039665 201 SDLFFVCMLRPRN--FHIQKQDSEIAAAQWMQAEDYAAQPYV 240 (275)
Q Consensus 201 ~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~~eel~~~~~~ 240 (275)
...-+++.+.... ....++..|...+.|+|++++..-...
T Consensus 125 ~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~~~~ 166 (246)
T KOG3069|consen 125 SVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLPKHQ 166 (246)
T ss_pred ccceeEEEEecccccccccCCchheeeeeeeeHHHHhhhhcc
Confidence 3333333332221 345667899999999999999865433
No 89
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.08 E-value=6.4e-10 Score=89.87 Aligned_cols=115 Identities=19% Similarity=0.261 Sum_probs=86.1
Q ss_pred EEEEEEEeCCceEEEEEEecCCCCCCCceeCc-ceeccCCCCHHHHHHHHHHHHhCCCccee---EEEEEEe---eeccc
Q 039665 125 GVGAFVMNNKRELLVVQENNGALKGTGVWKLP-TGTIEEGEDICAAAVREVKEETGIDTEFV---EVLAFRQ---SHRSF 197 (275)
Q Consensus 125 ~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lP-gG~ve~gEs~~~aA~REl~EEtGl~~~~~---~~l~~~~---~~~~~ 197 (275)
+..++++|.+|++||.||...+..+++.|.-- .||--+||+..+||+|-+.+|+||+.... +++..+. .....
T Consensus 35 AFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~ 114 (185)
T COG1443 35 AFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDG 114 (185)
T ss_pred hhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCC
Confidence 46789999999999999988888899999775 68888999999999999999999998632 3332221 22222
Q ss_pred cc--eEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 198 FR--KSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 198 ~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
.. ..+.++.+++. + .+.++++|..+++|++.+++.++.....
T Consensus 115 ~~E~Eic~V~~~~~~--~-~~~~npdEV~~~~wv~~e~l~~~~~~~~ 158 (185)
T COG1443 115 IVENEICPVLAARLD--S-ALDPNPDEVMDYRWVSPEDLKEMVDATP 158 (185)
T ss_pred cceeeeeeEEEEeec--C-CCCCChHHhhheeccCHHHHHHhhcCCc
Confidence 33 33344444443 3 5566789999999999999998865543
No 90
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.99 E-value=2.6e-09 Score=82.35 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=70.6
Q ss_pred EEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEE
Q 039665 128 AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVC 207 (275)
Q Consensus 128 ~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~ 207 (275)
+++++.++++||.||...+. .+|+|+||.-..+. ++..+.+.+.+.+..|+.+.....++.+.+.++++.....+|.+
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gl-l~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~ 79 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGL-LAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEV 79 (114)
T ss_dssp EEEEETTSEEEEEE--SSST-TTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEE
T ss_pred EEEEEeCCEEEEEECCCCCh-hhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEE
Confidence 57888999999999987665 78999999988774 33355666667788898887777888888888888888888888
Q ss_pred EEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 208 MLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 208 ~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
.+...... +..+..|++++++.+++++..
T Consensus 80 ~~~~~~~~------~~~~~~W~~~~~l~~~~~p~~ 108 (114)
T PF14815_consen 80 EVSADPPA------EPEEGQWVSLEELDQYPLPTP 108 (114)
T ss_dssp EEE-SS----------TTEEEEEGGGGGGS---HH
T ss_pred EecCCCCC------CCCCcEEEEHHHHhhCCCCHH
Confidence 76533211 456789999999999888654
No 91
>PLN02839 nudix hydrolase
Probab=98.79 E-value=3.9e-07 Score=82.76 Aligned_cols=173 Identities=17% Similarity=0.199 Sum_probs=104.6
Q ss_pred ChHHHHHHHHHHHHHHHHhCCeeEEEEccccccccchHHHhcCceeccCCCCeeeEEeecCCCcCCCCCCCcceeEEEEE
Q 039665 50 DSKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAF 129 (275)
Q Consensus 50 ~~~~f~~~l~~~l~~w~~~~~~~vW~~~~~~~~~l~~~~~~~gf~~~~~~~~~~~l~~wl~~~~~~~p~~~~~~v~v~~v 129 (275)
++++-.+.|..-+..|+.+|.-.=| +.+ +.+.. .+| . .+-++.+ .-....+-...+.-+.+.++
T Consensus 148 t~~~Rt~al~~v~~~lr~~g~~~gW---RnE---~y~V~--~~~---~-~~~l~~i----ERaA~~lfGi~tyGVHlNGy 211 (372)
T PLN02839 148 KPEDRTRAVADVIKILGDKGIIPGI---RNE---LYPVK--PSF---N-APVFFSL----ERAAAPYFGIKGYGVHMNGY 211 (372)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCc---ccC---ccccc--cCC---C-CcceEEE----eeccccccCceeEEEEEEEE
Confidence 5678888888888999988752223 211 11111 111 0 0111111 00011111122333444455
Q ss_pred EEe-CCceEEEEEEecCCCCCCCceeC-cceeccCCCCHHHHHHHHHHHHhCCCcc---eeEEEEEEeeecc--ccceEE
Q 039665 130 VMN-NKRELLVVQENNGALKGTGVWKL-PTGTIEEGEDICAAAVREVKEETGIDTE---FVEVLAFRQSHRS--FFRKSD 202 (275)
Q Consensus 130 v~~-~~~~vLLv~r~~~~~~~~~~w~l-PgG~ve~gEs~~~aA~REl~EEtGl~~~---~~~~l~~~~~~~~--~~~~~~ 202 (275)
+.. .+.++++.||...+...+|+|+- .+|++..||++.++++||.+||.||... .....|.+..... ..-...
T Consensus 212 v~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~e 291 (372)
T PLN02839 212 VERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRD 291 (372)
T ss_pred EecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccC
Confidence 544 44679999999888889999965 5899999999999999999999999754 3344454433211 111334
Q ss_pred EEEEEEEe-cCCccccCCccccceEEEEeHhhHhcCC
Q 039665 203 LFFVCMLR-PRNFHIQKQDSEIAAAQWMQAEDYAAQP 238 (275)
Q Consensus 203 ~~f~~~~~-~~~~~~~~~~~E~~~~~Wv~~eel~~~~ 238 (275)
..|++.+. +....+..++.|+.++.+++++|+.+..
T Consensus 292 vly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l 328 (372)
T PLN02839 292 VLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVI 328 (372)
T ss_pred EEEEeeeecCCccccCCCccceeEEEEecHHHHHHHH
Confidence 45555443 2223446678999999999999998543
No 92
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.77 E-value=1e-07 Score=73.12 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=79.1
Q ss_pred EEEEEEEe-CCc--eEEEEEEecCCC---CCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcc-eeEEEEEEeeeccc
Q 039665 125 GVGAFVMN-NKR--ELLVVQENNGAL---KGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE-FVEVLAFRQSHRSF 197 (275)
Q Consensus 125 ~v~~vv~~-~~~--~vLLv~r~~~~~---~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~-~~~~l~~~~~~~~~ 197 (275)
+++++++. ..| .|||+.-- +++ ...|.|.+|.|....||++..||+||..||+||.+. ....++.... .
T Consensus 5 SAGvLlYR~~aG~v~VLLvHPG-GPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ---~ 80 (161)
T COG4119 5 SAGVLLYRARAGVVDVLLVHPG-GPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQ---S 80 (161)
T ss_pred cceeEEEEecCCCEEEEEecCC-CCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhcc---C
Confidence 46777776 333 45555432 222 135789999999999999999999999999999773 2222332221 1
Q ss_pred cceEEEEEE----------------EEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHH
Q 039665 198 FRKSDLFFV----------------CMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICL 254 (275)
Q Consensus 198 ~~~~~~~f~----------------~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~ 254 (275)
.++....|- ..-.+.++..+ .-.|...+-|+++.|.........++++..+++...
T Consensus 81 GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~-~FPEVDRagWF~l~eAr~Kil~gQRpfldrL~a~~~ 152 (161)
T COG4119 81 GGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMR-KFPEVDRAGWFPLAEARTKILKGQRPFLDRLMAHAV 152 (161)
T ss_pred CCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccc-cCcccccccceecHHHHhHHhhccchHHHHHHHHhc
Confidence 122222222 22222333322 225788899999999988877777777777666543
No 93
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.20 E-value=4.3e-06 Score=69.24 Aligned_cols=131 Identities=21% Similarity=0.349 Sum_probs=89.0
Q ss_pred cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeC-----c----ceecc-CCCCHHHHHHHHHHHHhCCCccee-----
Q 039665 121 SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKL-----P----TGTIE-EGEDICAAAVREVKEETGIDTEFV----- 185 (275)
Q Consensus 121 ~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~l-----P----gG~ve-~gEs~~~aA~REl~EEtGl~~~~~----- 185 (275)
.|| +..++++|.++++||+||...+..+++.|.- | +...+ .+.....||+|-|.-|+||..+.+
T Consensus 51 LHR-aFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~ 129 (225)
T KOG0142|consen 51 LHR-AFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEF 129 (225)
T ss_pred hhh-eeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHc
Confidence 344 4678999999999999999888888888842 2 22111 123578899999999999986544
Q ss_pred EEEEEEee---eccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCcccc---hHHHHHHHHH
Q 039665 186 EVLAFRQS---HRSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKH---QMFNYICQIC 253 (275)
Q Consensus 186 ~~l~~~~~---~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~---~~~~~~~~~~ 253 (275)
.+++.+++ ..+.++..-+-|+..+.. ...++++++|+.+++|++.+|+.++...... +.++.+.+.+
T Consensus 130 ~~ltrihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs~eelkel~~~~~~~~TPWfkli~~~~ 202 (225)
T KOG0142|consen 130 NFLTRIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVSREELKELVAKASAGFTPWFKLISENF 202 (225)
T ss_pred ccceeeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheecHHHHHHHHhccccCCChHHHHHHHHH
Confidence 34544432 334466555555555443 3466777899999999999999887433222 4566655544
No 94
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.87 E-value=0.00019 Score=57.63 Aligned_cols=108 Identities=17% Similarity=0.304 Sum_probs=71.9
Q ss_pred EEEEeCCceEEEEEEecCCCC--CCCceeCc-ceeccCCC---CHHH----HHHHHHHHHhCCC---cceeEEEEEEeee
Q 039665 128 AFVMNNKRELLVVQENNGALK--GTGVWKLP-TGTIEEGE---DICA----AAVREVKEETGID---TEFVEVLAFRQSH 194 (275)
Q Consensus 128 ~vv~~~~~~vLLv~r~~~~~~--~~~~w~lP-gG~ve~gE---s~~~----aA~REl~EEtGl~---~~~~~~l~~~~~~ 194 (275)
+++.+.+ +||+-.|-.++.. ..+.+.+- |||+..++ +..+ .+.|||.||.++. ...+..+|.+...
T Consensus 66 vvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd 144 (203)
T COG4112 66 VVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDD 144 (203)
T ss_pred EEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCC
Confidence 4556654 8999998754321 13556663 89998765 3322 2789999999998 5667888888766
Q ss_pred ccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhc
Q 039665 195 RSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAA 236 (275)
Q Consensus 195 ~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~ 236 (275)
....++.++-.+...+....+....+.+..+++|+.++++.+
T Consensus 145 ~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 145 TNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred CcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence 665555544333333333333444567788999999999988
No 95
>PRK10880 adenine DNA glycosylase; Provisional
Probab=97.69 E-value=0.00037 Score=63.99 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=62.1
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEE
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFF 205 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 205 (275)
..++++..++++||.||...+. ++|+|+||.. +. + ...++..|+.|+.......++.+.+.++++....+.|
T Consensus 233 ~~~~~~~~~~~~~l~~r~~~gl-~~gl~~fP~~--~~-~----~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~~ 304 (350)
T PRK10880 233 GYFLLLQHGDEVWLEQRPPSGL-WGGLFCFPQF--AD-E----EELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVPM 304 (350)
T ss_pred EEEEEEEECCEEEEEECCccCh-hhccccCCCC--cc-h----hhHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEEE
Confidence 3345555578899999986665 7899999963 21 1 1246666888876432223445555566555554455
Q ss_pred EEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 206 VCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 206 ~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
.+........ .. ..+..|++++++..++++..
T Consensus 305 ~~~~~~~~~~---~~--~~~~~w~~~~~~~~~~~p~~ 336 (350)
T PRK10880 305 WLPVSSFTGC---MD--EGNGLWYNLAQPPSVGLAAP 336 (350)
T ss_pred EEEccccccc---cC--CcCCeEechHHhcccCCcHH
Confidence 4433211100 01 12346999999999988765
No 96
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.68 E-value=7.9e-06 Score=72.57 Aligned_cols=103 Identities=22% Similarity=0.334 Sum_probs=67.8
Q ss_pred EEEEEEEeCC-ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEE--EEEEeeeccccceE
Q 039665 125 GVGAFVMNNK-RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEV--LAFRQSHRSFFRKS 201 (275)
Q Consensus 125 ~v~~vv~~~~-~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~--l~~~~~~~~~~~~~ 201 (275)
..+++++|.. .++||++.. ....|.||-|++...|+-.+||+|||.||||.+...... .+ +.. ...+..
T Consensus 84 v~ga~ild~~~sr~llv~g~-----qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~-Ie~--nI~dq~ 155 (348)
T KOG2937|consen 84 VRGAIILDEKRSRCLLVKGW-----QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEG-IET--NIRDQL 155 (348)
T ss_pred CchHhhhhhhhhhhheeece-----ecccccccCccccccchhhhcchhcccchhhcCHHHHhccccC-ccc--chhhce
Confidence 4667888843 689999887 345599999999999999999999999999998753311 11 111 122333
Q ss_pred EEEEEEEEecCCccccC-CccccceEEEEeHhhHh
Q 039665 202 DLFFVCMLRPRNFHIQK-QDSEIAAAQWMQAEDYA 235 (275)
Q Consensus 202 ~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~~eel~ 235 (275)
...|+...........+ --.|+..+.|..++++.
T Consensus 156 ~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~ 190 (348)
T KOG2937|consen 156 VRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLV 190 (348)
T ss_pred eeeeeeccceeeeecchhhhccccceeeeehhhhc
Confidence 33344311111111111 23688899999999993
No 97
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.52 E-value=9e-05 Score=62.32 Aligned_cols=39 Identities=33% Similarity=0.660 Sum_probs=34.7
Q ss_pred eEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhC
Q 039665 136 ELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETG 179 (275)
Q Consensus 136 ~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtG 179 (275)
+++.+||. ..+.|.+|||.+|+||.+-.+.+||+.||.=
T Consensus 140 e~vavkr~-----d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRP-----DNGEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecC-----CCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 57788887 5689999999999999999999999999963
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=97.40 E-value=0.00063 Score=59.82 Aligned_cols=115 Identities=20% Similarity=0.150 Sum_probs=79.3
Q ss_pred EEEEEEEe-CCceEEEEEEecCCC--------------------------CCCCceeCcceeccCCCCHHHHHHHHHHHH
Q 039665 125 GVGAFVMN-NKRELLVVQENNGAL--------------------------KGTGVWKLPTGTIEEGEDICAAAVREVKEE 177 (275)
Q Consensus 125 ~v~~vv~~-~~~~vLLv~r~~~~~--------------------------~~~~~w~lPgG~ve~gEs~~~aA~REl~EE 177 (275)
+|.++++| ...+++|+|+.|... .-+-+.++.+|.++..-+..+-|.||..||
T Consensus 231 Svt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e~vee 310 (405)
T KOG4432|consen 231 SVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARESVEE 310 (405)
T ss_pred ceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHHHHHH
Confidence 57788888 566788888765321 112356777888888788999999999999
Q ss_pred hCCCcc--eeEEEEEEeeeccccceEEEEEEEEEecCC----ccccCCccccceEEEEeHhhHhcCCC
Q 039665 178 TGIDTE--FVEVLAFRQSHRSFFRKSDLFFVCMLRPRN----FHIQKQDSEIAAAQWMQAEDYAAQPY 239 (275)
Q Consensus 178 tGl~~~--~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~~E~~~~~Wv~~eel~~~~~ 239 (275)
+|+++. .++.+..+....+..+.....|.|.++... +--..+++|..++.-++++++..+..
T Consensus 311 cGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~~ 378 (405)
T KOG4432|consen 311 CGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLYR 378 (405)
T ss_pred hCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHHh
Confidence 999874 345555555555555666666667554322 11223456888999999999988744
No 99
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=97.33 E-value=0.0004 Score=61.01 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=62.6
Q ss_pred eEEEEEEEeCC-ceEEEEEEecCCC------------------------CCCCceeCcceeccCCCCHHHHHHHHHHHHh
Q 039665 124 VGVGAFVMNNK-RELLVVQENNGAL------------------------KGTGVWKLPTGTIEEGEDICAAAVREVKEET 178 (275)
Q Consensus 124 v~v~~vv~~~~-~~vLLv~r~~~~~------------------------~~~~~w~lPgG~ve~gEs~~~aA~REl~EEt 178 (275)
-+|.+++++.+ .++|++|+.|+.. .-+.+.++.||.+|..-++.+-|..|+.||+
T Consensus 27 ~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eec 106 (405)
T KOG4432|consen 27 SSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEEC 106 (405)
T ss_pred cceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHh
Confidence 35778888844 6799999876421 1123568999999999999999999999999
Q ss_pred CCCcceeEEEEEEeeeccc--cceEEEEEEEEEe
Q 039665 179 GIDTEFVEVLAFRQSHRSF--FRKSDLFFVCMLR 210 (275)
Q Consensus 179 Gl~~~~~~~l~~~~~~~~~--~~~~~~~f~~~~~ 210 (275)
|+++....++..+....+. .+...++|.|...
T Consensus 107 gy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~ 140 (405)
T KOG4432|consen 107 GYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEID 140 (405)
T ss_pred CCcCChhHceEEEEEEeccccCccchheeeeecc
Confidence 9999776666544433322 3345677777654
No 100
>PRK13910 DNA glycosylase MutY; Provisional
Probab=96.31 E-value=0.038 Score=49.54 Aligned_cols=91 Identities=10% Similarity=0.129 Sum_probs=53.7
Q ss_pred EEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEEEEEEE
Q 039665 128 AFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSDLFFVC 207 (275)
Q Consensus 128 ~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~ 207 (275)
+++++ ++++||.||. .+ .+.|+|+||+. +. +.+.... .++.+.+.++++.....+|.+
T Consensus 191 ~~~~~-~~~~ll~kr~-~~-l~~gl~~fP~~--~~--------------~~~~~~~---~~~~~~H~fTH~~~~~~~~~~ 248 (289)
T PRK13910 191 GVVIQ-NNQIALEKIE-QK-LYLGMHHFPNL--KE--------------NLEYKLP---FLGAIKHSHTKFKLNLNLYLA 248 (289)
T ss_pred EEEEE-CCEEEEEECC-Cc-hhcccccCCCC--hh--------------hhccccc---ccCceEEEEEeEEEEEEEEEE
Confidence 34444 6789998874 44 57899999963 21 1111111 234555666665655566655
Q ss_pred EEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHH
Q 039665 208 MLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQIC 253 (275)
Q Consensus 208 ~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~ 253 (275)
.... . .....|++++++.+++++.. ++++++.+
T Consensus 249 ~~~~-------~---~~~~~w~~~~~~~~~~~p~~---~~k~~~~l 281 (289)
T PRK13910 249 AIKD-------L---KNPIRFYSLKDLETLPISSM---TLKILNFL 281 (289)
T ss_pred Eecc-------C---CccceEecHHHhhhcCCcHH---HHHHHHHH
Confidence 3321 0 12348999999999988754 44555443
No 101
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=94.74 E-value=0.13 Score=43.00 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=30.5
Q ss_pred ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCC
Q 039665 135 RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181 (275)
Q Consensus 135 ~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~ 181 (275)
-.|||.|.. ...|.+|||.+.+||+..++..|.+.+-.|..
T Consensus 58 PHvLLLq~~------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 58 PHVLLLQIG------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEEEET------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred cEEEEEecc------CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 469999864 34899999999999999999999999999986
No 102
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=94.70 E-value=0.084 Score=48.05 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=60.7
Q ss_pred eeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcceeEEEEEEeeeccccceEE
Q 039665 123 RVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTEFVEVLAFRQSHRSFFRKSD 202 (275)
Q Consensus 123 ~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 202 (275)
+..++.++.+.+++++|.+|...+. ..|+|+||....+. .. .+..-+.|+.. +.++.+.+.++++....
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~~gl-~~gl~~fP~~e~~~--~~-----~~~~~~~~~~~---~~~~~~~H~fth~~l~i 303 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRPEKGL-LGGLWCFPQFEDEA--DL-----LDWLAADGLAA---EPLGAFRHTFTHFRLTI 303 (342)
T ss_pred hheeeEEEEccCcchhhhhCcccCc-eecccccccccccc--hh-----hhHhhhccccc---ccccceeeeeeEEEEEE
Confidence 5567778888899999999987665 68999999976544 22 22233344443 33555555555544333
Q ss_pred EEEEEEEecCCccccCCccccceEEEEeHhhHhcCCCccc
Q 039665 203 LFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLK 242 (275)
Q Consensus 203 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~ 242 (275)
. +.+.... ... +..|++++++....++..
T Consensus 304 ~-~~a~~~~---------~~~-~~~w~~~~~~~~~~l~~p 332 (342)
T COG1194 304 E-LRASASL---------VLS-DGRWYNLSDLESIGLPAP 332 (342)
T ss_pred E-EEeeccc---------CCC-CceeccccccccccccHH
Confidence 3 2221110 222 689999999998766543
No 103
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.24 Score=42.81 Aligned_cols=111 Identities=20% Similarity=0.287 Sum_probs=70.1
Q ss_pred EEEEEEEeCC---ceEEEEEEecCCCCCCCcee-CcceeccCCCCHHHHHHHHHHHHhCCCcceeEE---EEEEeee---
Q 039665 125 GVGAFVMNNK---RELLVVQENNGALKGTGVWK-LPTGTIEEGEDICAAAVREVKEETGIDTEFVEV---LAFRQSH--- 194 (275)
Q Consensus 125 ~v~~vv~~~~---~~vLLv~r~~~~~~~~~~w~-lPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~---l~~~~~~--- 194 (275)
.+.+.|.++. -++.+.||++.+-.+++.|+ +-||++--|-.+.++|+.|..||..+....... .|.....
T Consensus 135 hingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~e 214 (306)
T KOG4313|consen 135 HINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFE 214 (306)
T ss_pred eeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeee
Confidence 3444555533 25888888887777889886 468999999999999999999999998732221 1222111
Q ss_pred --ccccceEEEEEEEEEecCCccccCCccccceEEEEeHhhHhc
Q 039665 195 --RSFFRKSDLFFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAA 236 (275)
Q Consensus 195 --~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~ 236 (275)
...+....++|-..+. ...-++..+.|...+..+++.+-.+
T Consensus 215 sr~~~~pe~qYVfDL~l~-~d~iP~~nDGEV~~F~Lltl~~~v~ 257 (306)
T KOG4313|consen 215 SRQGLFPETQYVFDLELP-LDFIPQNNDGEVQAFELLTLKDCVE 257 (306)
T ss_pred hhhccCccceEEEeccCc-hhhcCCCCCCceeeEeeecHHHHHH
Confidence 1222233333332221 1223344567888888888877654
No 104
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=94.31 E-value=0.12 Score=42.02 Aligned_cols=46 Identities=26% Similarity=0.491 Sum_probs=37.7
Q ss_pred EEEEeCC--ceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhC
Q 039665 128 AFVMNNK--RELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETG 179 (275)
Q Consensus 128 ~vv~~~~--~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtG 179 (275)
++++.+. .+|||.|-. ...+++|||.+++||+-.+...|-+-|-+|
T Consensus 75 vlivheH~lPHvLLLQig------~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 75 VLIVHEHNLPHVLLLQIG------NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred eEEEeecCCCeEEEEeeC------CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 4444433 678888754 467999999999999999999999999999
No 105
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=93.34 E-value=0.42 Score=41.46 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=59.8
Q ss_pred eEEEEEEecCCCCCCCceeCcceec-cCCCCHHHHHHHHHHHHhCCCcceeE----EEEEE--eeecc---cc--ceEEE
Q 039665 136 ELLVVQENNGALKGTGVWKLPTGTI-EEGEDICAAAVREVKEETGIDTEFVE----VLAFR--QSHRS---FF--RKSDL 203 (275)
Q Consensus 136 ~vLLv~r~~~~~~~~~~w~lPgG~v-e~gEs~~~aA~REl~EEtGl~~~~~~----~l~~~--~~~~~---~~--~~~~~ 203 (275)
=+|||++.-+ ..+.|.||.+.. +.++++..+|.|+|.+-.|=....+- .++.. ..... .. +....
T Consensus 140 LyLLV~~k~g---~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~f 216 (263)
T KOG4548|consen 140 LYLLVKRKFG---KSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVF 216 (263)
T ss_pred EEEEEeeccC---ccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeE
Confidence 4788885533 357999999999 99999999999999999886654332 12211 10000 01 12233
Q ss_pred EEEEEEecCCccccCCccccceEEEEeHhhHhcCCC
Q 039665 204 FFVCMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPY 239 (275)
Q Consensus 204 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~ 239 (275)
+|-|.+...+.. +..-..++.|++-+|+.+...
T Consensus 217 f~k~~lv~~~~~---kn~n~edfvWvTkdel~e~l~ 249 (263)
T KOG4548|consen 217 FFKASLVANSNQ---KNQNKEDFVWVTKDELGEKLP 249 (263)
T ss_pred Eeeeeeccccch---hcccccceEEechHHHhhhcc
Confidence 444444433211 222334599999999988643
No 106
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=92.43 E-value=0.38 Score=42.84 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=24.1
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcce
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTG 158 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG 158 (275)
..+++.+.++++|+.||...+. ..|+|+||+.
T Consensus 230 ~~~~~~~~~~~~~~~~r~~~~~-~~gl~~~p~~ 261 (275)
T TIGR01084 230 YFLVLQNYDGEVLLEQRPEKGL-WGGLYCFPQF 261 (275)
T ss_pred EEEEEEeCCCeEEEEeCCCCch-hhccccCCCC
Confidence 4344456678999999976654 6899999974
No 107
>PF14443 DBC1: DBC1
Probab=72.11 E-value=18 Score=28.24 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=24.4
Q ss_pred CCceeCc--ceeccCC-CCHHHHHHHHHHHHhCCCcc
Q 039665 150 TGVWKLP--TGTIEEG-EDICAAAVREVKEETGIDTE 183 (275)
Q Consensus 150 ~~~w~lP--gG~ve~g-Es~~~aA~REl~EEtGl~~~ 183 (275)
+|.|.-- ||-.+.+ ..+..+|+|=+++-|||+.+
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 4667544 4444432 35789999999999999974
No 108
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=66.60 E-value=1.4 Score=40.72 Aligned_cols=129 Identities=16% Similarity=0.095 Sum_probs=64.3
Q ss_pred ceEEEEEEecCCCCCCCceeCcceec-cCCCCH-HHHHHHH-HHHHhCCCcc-eeEEE---EEEeeeccccceEEEEE-E
Q 039665 135 RELLVVQENNGALKGTGVWKLPTGTI-EEGEDI-CAAAVRE-VKEETGIDTE-FVEVL---AFRQSHRSFFRKSDLFF-V 206 (275)
Q Consensus 135 ~~vLLv~r~~~~~~~~~~w~lPgG~v-e~gEs~-~~aA~RE-l~EEtGl~~~-~~~~l---~~~~~~~~~~~~~~~~f-~ 206 (275)
..||+.+|...++ ..|.|+||.-.. +++|-. ..|-+++ +.-+.+.... -.... |...+.+++.....++| .
T Consensus 387 ~~ilv~~rp~~gl-lagLw~fpti~~~e~se~~~~~a~~q~~v~~w~~~~~~t~~~~~~~~G~~~htfshi~~ts~V~~~ 465 (555)
T KOG2457|consen 387 NAILVYLRPAFGL-LAGLWKFPTIVSRELSEFVHIFAHIQRKVYVWLLVVQLTGGTEDLFKGQAKHTFSHICVTSDVLST 465 (555)
T ss_pred ceeEEEeccchhH-HHHhhhcCceeccCcchHHHHHHHHHHHHHHHhcccccccchhhhcccchhhhhhhhhhHHHHHHH
Confidence 4688888776554 579999998544 667643 3444444 8777776431 11111 22222222211122222 2
Q ss_pred EEEecCCccccCCccccceEEEEeHhhHhcCCCcccchHHHHHHHHHHhhccCccCCCCCCCCCC
Q 039665 207 CMLRPRNFHIQKQDSEIAAAQWMQAEDYAAQPYVLKHQMFNYICQICLTKSEKEYAGFSPMPLTT 271 (275)
Q Consensus 207 ~~~~~~~~~~~~~~~E~~~~~Wv~~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 271 (275)
+... ..+. ..-...++|++..+|..+... ...++.....++.+..+.|.+...+.+++
T Consensus 466 a~~~---~~~v--t~~p~~~~wi~q~~l~h~~~~--e~~lk~~~~~y~~~~~~a~l~~k~~qV~s 523 (555)
T KOG2457|consen 466 AGLT---SAVV--TVPPFRLQWIKQLSLDHMVEK--EQILKCRCIQYLKHTSKAYLFLKSHQVES 523 (555)
T ss_pred hhcC---CCcc--ccCCcccchhhhhhhHHHHHH--HHHHHHHHHHHHhcCchhHHHHHHhhccC
Confidence 2111 1111 111246789999888765332 22455544455544444555555554443
No 109
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=62.96 E-value=7.4 Score=23.81 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=12.0
Q ss_pred eCcceeccCCCCHHHHHHHHHHHHh
Q 039665 154 KLPTGTIEEGEDICAAAVREVKEET 178 (275)
Q Consensus 154 ~lPgG~ve~gEs~~~aA~REl~EEt 178 (275)
..-||...+|--+...+.||+-||.
T Consensus 12 tClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 12 TCLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HHhcccCCCCCCCchHHHHHHHHHH
Confidence 3447778888888899999999996
No 110
>PF12860 PAS_7: PAS fold
Probab=58.03 E-value=6.9 Score=29.21 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=33.8
Q ss_pred EEEEEEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHH
Q 039665 126 VGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAV 171 (275)
Q Consensus 126 v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~ 171 (275)
.|++++|.++++++..++ ....|.+|...+.+|-++.+.+.
T Consensus 6 ~Gv~v~D~~~rl~~~N~~-----~~~l~~~~~~~~~~G~~~~~l~~ 46 (115)
T PF12860_consen 6 QGVAVFDSDGRLVFWNQR-----FRELFGLPPEMLRPGASFRDLLR 46 (115)
T ss_pred ceEEEEcCCCeEEeEcHH-----HHHHhCCCHHHhcCCCCHHHHHH
Confidence 778999999999999887 45789999999988888655444
No 111
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=50.63 E-value=57 Score=28.69 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=37.1
Q ss_pred eCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHH-HHHHhCCCcceeEEEEEE
Q 039665 132 NNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVRE-VKEETGIDTEFVEVLAFR 191 (275)
Q Consensus 132 ~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~RE-l~EEtGl~~~~~~~l~~~ 191 (275)
+..-+||-|.+.. .+|-|-.++.-.-.++-.|+ |.+.|+.....++.+.++
T Consensus 34 ~~~p~VLtV~q~~---------aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF 85 (322)
T COG4111 34 DGGPRVLTVRQGA---------ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTF 85 (322)
T ss_pred CCCceEEEecccc---------cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhh
Confidence 3555788777652 29999999987677777777 566799988877766544
No 112
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=49.64 E-value=4.1 Score=36.90 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=48.4
Q ss_pred CCcCCCCCCCcceeEEEEEEEe--CCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCCcc
Q 039665 111 ETADVLPANASHRVGVGAFVMN--NKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGIDTE 183 (275)
Q Consensus 111 ~~~~~~p~~~~~~v~v~~vv~~--~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~~~ 183 (275)
..-++.|.+...+...+.++.+ .+.-+..+-+.. -+..|.||.|.+..||-+.++++|+-.||+|++..
T Consensus 226 ~~vak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~----~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 226 EVVAKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFA----KPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred chhhcCcccCccchhHHhhhhccccccceeeccccc----ccccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 3445566555555555555555 233333333332 35789999999999999999999999999998764
No 113
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=38.82 E-value=14 Score=30.90 Aligned_cols=68 Identities=25% Similarity=0.293 Sum_probs=35.3
Q ss_pred eeeEEeecCCCcCCCCCCC---cceeEEEEEEEeCCceEEEEEEecCCCCCCCceeCcceec---cCCCCHHHHH
Q 039665 102 YLMLVYWIPETADVLPANA---SHRVGVGAFVMNNKRELLVVQENNGALKGTGVWKLPTGTI---EEGEDICAAA 170 (275)
Q Consensus 102 ~~~l~~wl~~~~~~~p~~~---~~~v~v~~vv~~~~~~vLLv~r~~~~~~~~~~w~lPgG~v---e~gEs~~~aA 170 (275)
.+|+..|+.+.+..++..- ...+|...+++-.+|++.+..|.... ...-.-.||||.- ..|+++.|++
T Consensus 5 ~lml~Ewm~~~p~~l~~~w~~~~~P~G~R~lvv~~~g~t~~~~r~g~~-~~~f~s~lP~g~~~~~~~g~tILDci 78 (186)
T cd09232 5 QLMLSEWMVEVPDDLSEEWLVVPCPVGKRCLVVASKGKTVARSKNGRT-LHRFSSALPGGSRKTSNSGYTILDCI 78 (186)
T ss_pred ceechhhcccCCCccCcceEEEECcCceEEEEEEeCCEEEEEeCCCCE-EEecccCCCCCCcCCCCCCCEEEEEe
Confidence 3566666665444433221 11233444554447777777665222 1334568999874 3566665554
No 114
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=38.55 E-value=53 Score=25.63 Aligned_cols=32 Identities=44% Similarity=0.695 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCeeEEEEccccccccchHHHhcC
Q 039665 51 SKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEG 92 (275)
Q Consensus 51 ~~~f~~~l~~~l~~w~~~~~~~vW~~~~~~~~~l~~~~~~~g 92 (275)
.+.|.+.|+++|..|..++.-.| |++|++-.|
T Consensus 77 t~rF~~aL~~~L~~yq~~H~~VI----------LVspAVv~G 108 (128)
T PRK13717 77 SARFNTALEASLQAWQQKHHAVI----------LVSPAVVQG 108 (128)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEE----------EechhhhcC
Confidence 35999999999999999987666 566666555
No 115
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=32.38 E-value=78 Score=24.22 Aligned_cols=32 Identities=38% Similarity=0.556 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCeeEEEEccccccccchHHHhcC
Q 039665 51 SKVFSSRLRASLSLWRQQGKRGVWIKLPIELANLVEPAVQEG 92 (275)
Q Consensus 51 ~~~f~~~l~~~l~~w~~~~~~~vW~~~~~~~~~l~~~~~~~g 92 (275)
.+.|.+.|+++|..|..++.-.| +++|++-.|
T Consensus 64 ~~rF~~~L~~~L~~yq~~H~~vI----------LvspAVv~G 95 (112)
T TIGR02744 64 LGRFNALLEAELQAWQAQHHAII----------LVSPAVVSG 95 (112)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEE----------EechhhhcC
Confidence 35899999999999999987666 566766555
No 116
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.36 E-value=1.2e+02 Score=20.39 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=11.1
Q ss_pred CceeCcceeccCCC
Q 039665 151 GVWKLPTGTIEEGE 164 (275)
Q Consensus 151 ~~w~lPgG~ve~gE 164 (275)
..|-+|||.+-.+-
T Consensus 22 ~GWl~Pgg~vi~NP 35 (60)
T PF07026_consen 22 NGWLMPGGKVITNP 35 (60)
T ss_pred ceeecCCCeeEcCH
Confidence 45999999987654
No 117
>COG4506 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.67 E-value=2.6e+02 Score=22.24 Aligned_cols=60 Identities=23% Similarity=0.425 Sum_probs=36.0
Q ss_pred hcCceeccCCCCeeeEEeecCCCcCCCCCCCcceeEEEEEEEeCCceEEEEEEec--------CCCCCCCceeCcceecc
Q 039665 90 QEGFRYHHAEPDYLMLVYWIPETADVLPANASHRVGVGAFVMNNKRELLVVQENN--------GALKGTGVWKLPTGTIE 161 (275)
Q Consensus 90 ~~gf~~~~~~~~~~~l~~wl~~~~~~~p~~~~~~v~v~~vv~~~~~~vLLv~r~~--------~~~~~~~~w~lPgG~ve 161 (275)
-.|+.||.-..+|+....-+.+. .+...+--++++++|+|.-. .+......+..|.|.++
T Consensus 30 T~G~~Y~k~~~~Yl~Y~E~~~~g------------~v~TtlKi~d~e~~liR~G~v~M~~~F~~g~~tta~Y~t~~G~le 97 (143)
T COG4506 30 TKGEFYHKQNQDYLRYQEVLSDG------------TVVTTLKIDDDELLLIRSGDVNMRMHFVRGIQTTARYDTPAGSLE 97 (143)
T ss_pred cceEEEEeCCcceEEEEEEeeCc------------eeEEEEEEcCCEEEEEEcccchhhheeecCcceEEEEecCCceEE
Confidence 46888888888887654333322 12233333577888887632 12223467888888876
No 118
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=22.83 E-value=1.8e+02 Score=21.92 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=33.4
Q ss_pred EEEEeC---CceEEEEEEecCCCCCCCceeCcceec---cCCCCHHHHHHHHHHHHhCCCcc
Q 039665 128 AFVMNN---KRELLVVQENNGALKGTGVWKLPTGTI---EEGEDICAAAVREVKEETGIDTE 183 (275)
Q Consensus 128 ~vv~~~---~~~vLLv~r~~~~~~~~~~w~lPgG~v---e~gEs~~~aA~REl~EEtGl~~~ 183 (275)
-+|+|. ..+|.|--+. + +-.+..-+|.. ..|+++.+...+|+.+-+|..+.
T Consensus 47 ~~VINkQ~p~~QIWlas~s-G----~~hf~~~~~~W~~~r~g~~L~~~L~~~~~~~~g~~v~ 103 (105)
T PRK00446 47 KIIINRQEPLHELWLAAKS-G----GFHFDYKDGEWICDRSGEEFWALLEEAATQQAGEPVS 103 (105)
T ss_pred EEEEeCCCchhheeEecCC-C----CccceecCCeEEECCCCcHHHHHHHHHHHHHcCCcee
Confidence 456663 3567776542 2 23344445544 35889999999999999998764
No 119
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=21.98 E-value=53 Score=30.01 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=16.2
Q ss_pred ccCCCCHHHHHHHHHHHHhCCC
Q 039665 160 IEEGEDICAAAVREVKEETGID 181 (275)
Q Consensus 160 ve~gEs~~~aA~REl~EEtGl~ 181 (275)
++..+-.-+.+.||++||++|-
T Consensus 409 V~~~dLsDe~~MrelReeL~IG 430 (466)
T PF09505_consen 409 VEPMDLSDEYVMRELREELNIG 430 (466)
T ss_pred CChhhcccHHHHHHHHHhcCcc
Confidence 3444445678999999999864
No 120
>PRK07198 hypothetical protein; Validated
Probab=20.34 E-value=1.5e+02 Score=27.97 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=32.7
Q ss_pred EEeCCceEEEEEEecCCCCCCCceeCcceeccCCCCHHHHHHHHHHHHhCCC
Q 039665 130 VMNNKRELLVVQENNGALKGTGVWKLPTGTIEEGEDICAAAVREVKEETGID 181 (275)
Q Consensus 130 v~~~~~~vLLv~r~~~~~~~~~~w~lPgG~ve~gEs~~~aA~REl~EEtGl~ 181 (275)
|++.++.+.+.|-. -.-.|-|||=.-..|=+ +...+|-|+|+||=-
T Consensus 157 i~~~~g~~~vtk~a-----v~pvwylpgva~rfg~~-e~~lrr~lfe~t~g~ 202 (418)
T PRK07198 157 ILLANGDVVVTKAA-----IEPVWYLPGVAERFGVS-ETDLRRTLFEQTGGM 202 (418)
T ss_pred eecCCCcEEEEEee-----ecccccccchHHHcCCC-HHHHHHHHHHHcCCC
Confidence 35567888888776 34579999865444432 456889999999954
Done!