BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039667
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3G|A Chain A, Three-Dimensional Structure Of The Escherichia Coli
Phosphocarrier Protein Iii Glc
pdb|1F3Z|A Chain A, Iiaglc-Zn Complex
Length = 161
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 68 YCADCGELLGWTYKRAFEESQKYKEGKIVLE 98
+ D EL G +KR EE Q+ K G V+E
Sbjct: 84 FGIDTVELKGEGFKRIAEEGQRVKVGDTVIE 114
>pdb|1GLA|F Chain F, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|F Chain F, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|F Chain F, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|F Chain F, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|F Chain F, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|2F3G|A Chain A, Iiaglc Crystal Form Iii
pdb|2F3G|B Chain B, Iiaglc Crystal Form Iii
pdb|1GGR|A Chain A, Complex Of Enzyme Iiaglc And The Histidine-Containing
Phosphocarrier Protein Hpr From Escherichia Coli Nmr,
Restrained Regularized Mean Structure
pdb|1O2F|A Chain A, Complex Of Enzyme Iiaglc And Iibglc Phosphocarrier Protein
Hpr From Escherichia Coli Nmr, Restrained Regularized
Mean Structure
Length = 168
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 68 YCADCGELLGWTYKRAFEESQKYKEGKIVLE 98
+ D EL G +KR EE Q+ K G V+E
Sbjct: 91 FGIDTVELKGEGFKRIAEEGQRVKVGDTVIE 121
>pdb|2VR0|A Chain A, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
pdb|2VR0|B Chain B, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
pdb|2VR0|D Chain D, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
pdb|2VR0|E Chain E, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex Bound To The Hqno Inhibitor
Length = 524
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 23 HEDIVSKGFQASSGRAFLFSHAAN----IVEGPKEDQHLLTGLHTVADVYCADC 72
H D+ KGF+ G+ ++H A+ I E + + G H A V CADC
Sbjct: 269 HGDLQVKGFE---GKFADWTHPASKTPMIKAQHPEYETWINGTHGAAGVTCADC 319
>pdb|2J7A|A Chain A, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|B Chain B, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|D Chain D, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|E Chain E, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|G Chain G, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|H Chain H, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|J Chain J, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|K Chain K, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|M Chain M, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|N Chain N, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|P Chain P, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
pdb|2J7A|Q Chain Q, Crystal Structure Of Cytochrome C Nitrite Reductase Nrfha
Complex From Desulfovibrio Vulgaris
Length = 500
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 23 HEDIVSKGFQASSGRAFLFSHAAN----IVEGPKEDQHLLTGLHTVADVYCADC 72
H D+ KGF+ G+ ++H A+ I E + + G H A V CADC
Sbjct: 245 HGDLQVKGFE---GKFADWTHPASKTPMIKAQHPEYETWINGTHGAAGVTCADC 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,198,645
Number of Sequences: 62578
Number of extensions: 117154
Number of successful extensions: 247
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 6
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)