Query 039672
Match_columns 192
No_of_seqs 138 out of 1695
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 12:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 3.5E-26 7.5E-31 161.2 13.2 135 47-191 14-154 (160)
2 KOG0027 Calmodulin and related 99.9 3.5E-24 7.6E-29 152.9 12.9 138 49-192 4-148 (151)
3 KOG0031 Myosin regulatory ligh 99.9 6.7E-22 1.5E-26 135.9 11.6 135 48-192 27-164 (171)
4 KOG0028 Ca2+-binding protein ( 99.9 9.9E-22 2.1E-26 136.0 12.2 134 49-192 29-169 (172)
5 PTZ00183 centrin; Provisional 99.8 3.2E-20 7E-25 133.1 13.3 134 49-192 13-153 (158)
6 PTZ00184 calmodulin; Provision 99.8 1E-19 2.3E-24 129.0 13.3 133 49-191 7-146 (149)
7 KOG0030 Myosin essential light 99.8 4.1E-19 9E-24 120.2 11.6 134 49-191 7-149 (152)
8 KOG0037 Ca2+-binding protein, 99.7 3E-17 6.5E-22 119.6 12.2 124 51-191 55-186 (221)
9 KOG0044 Ca2+ sensor (EF-Hand s 99.7 6.1E-17 1.3E-21 118.1 11.8 148 35-191 8-173 (193)
10 KOG0034 Ca2+/calmodulin-depend 99.7 2.6E-16 5.7E-21 114.7 13.5 131 50-191 27-173 (187)
11 KOG0036 Predicted mitochondria 99.6 1.5E-14 3.2E-19 114.3 11.8 126 50-191 11-144 (463)
12 KOG0377 Protein serine/threoni 99.6 2.1E-14 4.6E-19 114.3 10.2 179 12-192 423-614 (631)
13 PF13499 EF-hand_7: EF-hand do 99.5 1.5E-13 3.3E-18 84.2 7.3 62 128-191 1-66 (66)
14 cd05022 S-100A13 S-100A13: S-1 99.5 7.2E-14 1.6E-18 90.2 6.1 66 124-191 5-73 (89)
15 cd05027 S-100B S-100B: S-100B 99.4 9.9E-13 2.2E-17 85.0 6.9 66 124-191 5-77 (88)
16 PLN02964 phosphatidylserine de 99.3 1.3E-11 2.9E-16 104.9 10.8 104 47-191 137-241 (644)
17 cd05026 S-100Z S-100Z: S-100Z 99.3 1.3E-11 2.8E-16 80.7 6.7 66 124-191 7-79 (93)
18 cd05031 S-100A10_like S-100A10 99.3 1.5E-11 3.2E-16 80.7 6.9 66 124-191 5-77 (94)
19 cd05025 S-100A1 S-100A1: S-100 99.3 1.7E-11 3.7E-16 80.1 7.0 66 124-191 6-78 (92)
20 cd05029 S-100A6 S-100A6: S-100 99.3 1.6E-11 3.4E-16 79.4 6.7 66 124-191 7-77 (88)
21 smart00027 EH Eps15 homology d 99.2 7.3E-11 1.6E-15 77.7 7.2 64 124-191 7-70 (96)
22 cd00052 EH Eps15 homology doma 99.2 6E-11 1.3E-15 72.6 6.4 58 130-191 2-59 (67)
23 KOG0038 Ca2+-binding kinase in 99.2 2.6E-10 5.6E-15 78.4 9.9 142 39-191 11-175 (189)
24 PF13499 EF-hand_7: EF-hand do 99.2 1.4E-10 3E-15 70.9 7.6 65 55-153 2-66 (66)
25 KOG0027 Calmodulin and related 99.2 9.3E-11 2E-15 83.6 7.8 66 124-191 5-70 (151)
26 PF13833 EF-hand_8: EF-hand do 99.2 1.2E-10 2.6E-15 68.3 6.4 50 140-191 1-51 (54)
27 cd00213 S-100 S-100: S-100 dom 99.2 9.5E-11 2.1E-15 75.9 6.5 68 124-191 5-77 (88)
28 cd05023 S-100A11 S-100A11: S-1 99.2 1.1E-10 2.4E-15 75.5 6.7 66 124-191 6-78 (89)
29 cd00051 EFh EF-hand, calcium b 99.2 2.7E-10 5.8E-15 67.9 7.9 62 129-192 2-63 (63)
30 KOG4223 Reticulocalbin, calume 99.1 1.4E-10 3.1E-15 89.5 6.7 130 54-189 164-301 (325)
31 KOG0044 Ca2+ sensor (EF-Hand s 99.1 6.4E-10 1.4E-14 81.5 9.6 111 69-191 8-126 (193)
32 COG5126 FRQ1 Ca2+-binding prot 99.1 4.6E-10 1E-14 79.6 7.2 65 124-191 17-81 (160)
33 cd00252 SPARC_EC SPARC_EC; ext 99.0 9.2E-10 2E-14 74.5 7.2 62 124-191 45-106 (116)
34 KOG0037 Ca2+-binding protein, 99.0 1.3E-09 2.8E-14 80.0 6.7 85 53-152 124-217 (221)
35 KOG4223 Reticulocalbin, calume 99.0 1.5E-09 3.3E-14 83.9 7.3 140 51-191 75-226 (325)
36 PF14658 EF-hand_9: EF-hand do 98.9 2.9E-09 6.4E-14 63.9 5.9 60 131-192 2-63 (66)
37 cd05030 calgranulins Calgranul 98.9 2.3E-09 5E-14 69.3 5.9 66 124-191 5-77 (88)
38 PTZ00183 centrin; Provisional 98.9 6.4E-09 1.4E-13 74.2 8.0 66 124-191 14-79 (158)
39 PTZ00184 calmodulin; Provision 98.9 5.6E-09 1.2E-13 73.6 7.2 66 124-191 8-73 (149)
40 KOG0028 Ca2+-binding protein ( 98.9 8.3E-09 1.8E-13 72.1 6.6 66 124-191 30-95 (172)
41 cd05022 S-100A13 S-100A13: S-1 98.8 3.6E-08 7.8E-13 63.7 8.0 68 52-156 7-76 (89)
42 KOG0041 Predicted Ca2+-binding 98.8 1.6E-08 3.5E-13 73.2 6.2 65 124-190 96-160 (244)
43 PF00036 EF-hand_1: EF hand; 98.7 2.5E-08 5.5E-13 50.4 3.6 29 128-156 1-29 (29)
44 KOG0040 Ca2+-binding actin-bun 98.7 1.4E-07 3.1E-12 85.0 10.4 128 47-191 2247-2396(2399)
45 KOG0751 Mitochondrial aspartat 98.7 1.1E-07 2.3E-12 77.5 8.5 134 47-191 27-173 (694)
46 cd05026 S-100Z S-100Z: S-100Z 98.7 2.7E-07 5.9E-12 60.2 8.8 72 52-157 9-83 (93)
47 smart00027 EH Eps15 homology d 98.6 1.6E-07 3.4E-12 61.7 7.1 68 49-156 6-73 (96)
48 KOG0031 Myosin regulatory ligh 98.6 3.1E-07 6.7E-12 64.0 7.4 62 124-191 29-90 (171)
49 cd05025 S-100A1 S-100A1: S-100 98.6 8.2E-07 1.8E-11 57.8 9.0 72 52-157 8-82 (92)
50 cd05031 S-100A10_like S-100A10 98.5 3.7E-07 8E-12 59.7 6.9 69 52-158 7-82 (94)
51 PF13405 EF-hand_6: EF-hand do 98.5 1.4E-07 2.9E-12 48.6 3.8 30 128-157 1-31 (31)
52 cd05027 S-100B S-100B: S-100B 98.5 2.9E-07 6.2E-12 59.4 5.9 61 52-112 7-81 (88)
53 cd05024 S-100A10 S-100A10: A s 98.5 7.3E-07 1.6E-11 57.4 7.2 65 124-191 5-74 (91)
54 PLN02964 phosphatidylserine de 98.5 1.1E-06 2.3E-11 75.5 10.4 80 54-173 180-273 (644)
55 cd00052 EH Eps15 homology doma 98.5 8.2E-07 1.8E-11 54.0 6.9 61 56-156 2-62 (67)
56 PF00036 EF-hand_1: EF hand; 98.5 2.4E-07 5.2E-12 46.8 3.7 29 54-82 1-29 (29)
57 KOG0030 Myosin essential light 98.5 5.6E-07 1.2E-11 61.6 6.4 66 124-191 8-75 (152)
58 cd00213 S-100 S-100: S-100 dom 98.5 1.1E-06 2.3E-11 56.7 7.4 72 51-156 6-80 (88)
59 PF13833 EF-hand_8: EF-hand do 98.5 8.6E-07 1.9E-11 51.7 6.2 51 67-155 2-53 (54)
60 KOG0034 Ca2+/calmodulin-depend 98.5 1.2E-06 2.7E-11 64.1 8.3 99 55-156 68-176 (187)
61 cd00252 SPARC_EC SPARC_EC; ext 98.4 1.3E-06 2.9E-11 59.1 7.5 63 49-153 44-106 (116)
62 cd00051 EFh EF-hand, calcium b 98.4 1.8E-06 3.9E-11 51.0 7.3 61 55-153 2-62 (63)
63 KOG2643 Ca2+ binding protein, 98.4 1.6E-07 3.6E-12 75.4 3.3 85 96-191 212-312 (489)
64 KOG2643 Ca2+ binding protein, 98.4 8.7E-07 1.9E-11 71.3 6.4 123 55-192 320-452 (489)
65 PF12763 EF-hand_4: Cytoskelet 98.4 2.2E-06 4.8E-11 56.9 7.1 63 124-191 7-69 (104)
66 cd05029 S-100A6 S-100A6: S-100 98.3 4.8E-06 1E-10 53.7 7.9 68 52-157 9-81 (88)
67 cd05023 S-100A11 S-100A11: S-1 98.3 3.2E-06 7E-11 54.6 7.0 73 52-157 8-82 (89)
68 PF13405 EF-hand_6: EF-hand do 98.3 1.4E-06 3.1E-11 44.7 3.7 30 54-83 1-31 (31)
69 PF13202 EF-hand_5: EF hand; P 98.2 1.7E-06 3.7E-11 42.1 3.2 25 129-153 1-25 (25)
70 KOG0036 Predicted mitochondria 98.2 5.4E-06 1.2E-10 66.5 7.3 67 124-191 11-77 (463)
71 PRK12309 transaldolase/EF-hand 98.1 5.1E-06 1.1E-10 67.7 5.9 53 124-191 331-383 (391)
72 PF14788 EF-hand_10: EF hand; 98.1 1.3E-05 2.7E-10 45.6 5.1 47 143-191 1-47 (51)
73 KOG0041 Predicted Ca2+-binding 98.0 9.4E-05 2E-09 54.0 10.2 100 48-187 94-197 (244)
74 PF14658 EF-hand_9: EF-hand do 98.0 4.3E-05 9.3E-10 46.0 6.4 60 58-155 3-64 (66)
75 KOG2562 Protein phosphatase 2 98.0 4.3E-05 9.2E-10 62.3 8.0 118 59-189 284-420 (493)
76 KOG0040 Ca2+-binding actin-bun 97.9 2E-05 4.2E-10 71.9 6.2 68 124-191 2250-2322(2399)
77 cd05030 calgranulins Calgranul 97.9 8.2E-05 1.8E-09 48.0 7.0 72 52-157 7-81 (88)
78 PF13202 EF-hand_5: EF hand; P 97.8 2.8E-05 6.1E-10 37.7 3.1 25 55-79 1-25 (25)
79 PF10591 SPARC_Ca_bdg: Secrete 97.8 8.7E-06 1.9E-10 55.0 1.8 63 124-190 51-113 (113)
80 KOG1707 Predicted Ras related/ 97.7 0.00033 7.1E-09 59.0 10.0 135 52-190 194-374 (625)
81 cd05024 S-100A10 S-100A10: A s 97.7 0.00084 1.8E-08 43.3 9.0 71 53-157 8-78 (91)
82 KOG4065 Uncharacterized conser 97.6 0.0003 6.5E-09 46.8 6.7 62 130-191 70-143 (144)
83 KOG0751 Mitochondrial aspartat 97.6 0.00029 6.2E-09 58.1 7.5 121 53-188 108-239 (694)
84 KOG0046 Ca2+-binding actin-bun 97.5 0.00026 5.7E-09 58.7 6.6 67 124-191 16-83 (627)
85 KOG4251 Calcium binding protei 97.5 0.00045 9.8E-09 52.1 7.0 134 53-190 101-261 (362)
86 KOG0169 Phosphoinositide-speci 97.5 0.0011 2.5E-08 57.3 10.2 128 51-191 134-272 (746)
87 KOG4666 Predicted phosphate ac 97.5 0.00015 3.2E-09 56.8 4.2 84 96-191 272-357 (412)
88 PRK12309 transaldolase/EF-hand 97.5 0.00042 9.1E-09 56.7 7.0 27 130-156 360-386 (391)
89 PF12763 EF-hand_4: Cytoskelet 97.4 0.00074 1.6E-08 44.8 6.5 69 47-156 4-72 (104)
90 PF09279 EF-hand_like: Phospho 97.4 0.00074 1.6E-08 42.9 6.1 63 128-191 1-67 (83)
91 KOG1029 Endocytic adaptor prot 97.4 0.00066 1.4E-08 58.7 7.1 143 45-191 41-255 (1118)
92 KOG4251 Calcium binding protei 97.3 9.7E-05 2.1E-09 55.6 1.4 65 124-188 98-163 (362)
93 smart00054 EFh EF-hand, calciu 97.2 0.00055 1.2E-08 33.2 3.4 27 129-155 2-28 (29)
94 PF05042 Caleosin: Caleosin re 97.2 0.0049 1.1E-07 44.3 9.0 137 54-190 8-163 (174)
95 KOG0377 Protein serine/threoni 97.2 0.0022 4.7E-08 52.4 8.0 70 53-156 547-616 (631)
96 smart00054 EFh EF-hand, calciu 97.0 0.0012 2.5E-08 32.0 3.1 28 54-81 1-28 (29)
97 PF14788 EF-hand_10: EF hand; 97.0 0.0018 3.9E-08 36.8 4.0 33 124-156 18-50 (51)
98 KOG0038 Ca2+-binding kinase in 96.7 0.025 5.5E-07 39.5 8.7 92 57-156 75-178 (189)
99 PF10591 SPARC_Ca_bdg: Secrete 96.5 0.0015 3.3E-08 44.0 2.0 63 49-151 50-112 (113)
100 PF08726 EFhand_Ca_insen: Ca2+ 96.4 0.0021 4.6E-08 39.2 1.8 58 124-191 3-67 (69)
101 KOG2562 Protein phosphatase 2 95.4 0.043 9.3E-07 45.3 5.7 59 127-187 311-373 (493)
102 KOG0046 Ca2+-binding actin-bun 95.2 0.061 1.3E-06 45.1 6.2 64 48-112 14-87 (627)
103 KOG4666 Predicted phosphate ac 95.1 0.031 6.6E-07 44.2 3.8 95 53-157 259-361 (412)
104 KOG1955 Ral-GTPase effector RA 95.0 0.045 9.9E-07 45.6 4.7 64 124-191 228-291 (737)
105 KOG0042 Glycerol-3-phosphate d 94.9 0.059 1.3E-06 45.7 5.4 64 126-191 592-655 (680)
106 KOG2243 Ca2+ release channel ( 94.8 0.044 9.6E-07 50.9 4.5 55 133-190 4063-4117(5019)
107 KOG4578 Uncharacterized conser 94.7 0.031 6.6E-07 44.2 3.0 60 128-191 334-396 (421)
108 KOG0035 Ca2+-binding actin-bun 94.5 0.088 1.9E-06 47.1 5.6 96 47-151 741-848 (890)
109 PF09279 EF-hand_like: Phospho 94.4 0.24 5.2E-06 31.1 6.3 66 54-156 1-70 (83)
110 KOG4065 Uncharacterized conser 94.3 0.12 2.5E-06 34.7 4.6 79 50-152 63-142 (144)
111 PF05517 p25-alpha: p25-alpha 94.1 0.43 9.3E-06 34.0 7.6 63 129-191 1-67 (154)
112 KOG3555 Ca2+-binding proteogly 94.1 0.073 1.6E-06 42.4 3.9 62 124-191 247-308 (434)
113 KOG1265 Phospholipase C [Lipid 92.6 1.7 3.6E-05 39.3 10.1 66 127-192 221-298 (1189)
114 KOG1955 Ral-GTPase effector RA 92.1 0.29 6.3E-06 41.0 4.7 33 124-156 262-294 (737)
115 KOG0035 Ca2+-binding actin-bun 92.0 0.54 1.2E-05 42.3 6.5 66 124-191 744-814 (890)
116 PLN02952 phosphoinositide phos 91.8 1.8 3.8E-05 37.8 9.3 66 125-191 36-108 (599)
117 PF09069 EF-hand_3: EF-hand; 91.6 1.1 2.4E-05 28.8 6.1 63 126-191 2-73 (90)
118 PF05042 Caleosin: Caleosin re 91.5 2.2 4.7E-05 30.9 8.0 75 47-153 90-164 (174)
119 KOG4578 Uncharacterized conser 91.3 0.19 4.2E-06 39.8 2.8 63 57-156 337-399 (421)
120 KOG3866 DNA-binding protein of 91.0 0.3 6.5E-06 38.5 3.5 59 130-190 247-321 (442)
121 KOG3555 Ca2+-binding proteogly 90.6 0.68 1.5E-05 37.1 5.2 36 124-159 279-314 (434)
122 KOG0169 Phosphoinositide-speci 90.6 0.66 1.4E-05 40.8 5.6 66 124-191 133-198 (746)
123 KOG1029 Endocytic adaptor prot 88.1 1 2.2E-05 40.0 4.9 67 50-156 192-258 (1118)
124 KOG3866 DNA-binding protein of 87.7 1.4 3E-05 34.9 5.0 28 130-157 299-326 (442)
125 PF14513 DAG_kinase_N: Diacylg 86.8 0.7 1.5E-05 32.3 2.7 49 140-192 4-59 (138)
126 KOG2871 Uncharacterized conser 84.1 1 2.2E-05 36.5 2.7 64 122-187 304-368 (449)
127 KOG4347 GTPase-activating prot 83.8 1.5 3.3E-05 38.0 3.8 58 126-186 554-611 (671)
128 PLN02222 phosphoinositide phos 82.5 6.1 0.00013 34.4 7.0 66 125-192 23-89 (581)
129 KOG0998 Synaptic vesicle prote 80.3 0.74 1.6E-05 41.8 0.9 63 125-191 281-343 (847)
130 PLN02228 Phosphoinositide phos 80.2 11 0.00024 32.8 7.8 67 124-192 21-91 (567)
131 KOG3449 60S acidic ribosomal p 76.5 20 0.00043 23.9 6.6 45 129-175 3-47 (112)
132 KOG4347 GTPase-activating prot 75.9 3.8 8.3E-05 35.7 3.8 25 124-149 588-612 (671)
133 cd07313 terB_like_2 tellurium 75.3 2.7 5.8E-05 27.4 2.3 50 141-190 13-62 (104)
134 PLN02230 phosphoinositide phos 75.1 19 0.00041 31.6 7.8 67 124-191 26-100 (598)
135 COG4103 Uncharacterized protei 73.8 13 0.00028 26.1 5.2 61 129-191 32-92 (148)
136 KOG1707 Predicted Ras related/ 73.2 5.4 0.00012 34.5 4.0 61 52-112 314-379 (625)
137 KOG4004 Matricellular protein 71.6 1.7 3.7E-05 32.1 0.7 47 96-153 201-248 (259)
138 PF07308 DUF1456: Protein of u 68.9 16 0.00035 22.1 4.4 29 147-177 17-45 (68)
139 PF12174 RST: RCD1-SRO-TAF4 (R 68.8 3.4 7.3E-05 25.3 1.4 29 127-155 25-53 (70)
140 PLN02223 phosphoinositide phos 66.9 31 0.00068 29.8 7.2 65 124-191 13-90 (537)
141 PF13608 Potyvirid-P3: Protein 66.3 5.3 0.00011 33.7 2.6 86 52-160 288-386 (445)
142 PF01023 S_100: S-100/ICaBP ty 64.2 22 0.00047 19.4 4.0 30 126-155 5-36 (44)
143 PLN02952 phosphoinositide phos 63.7 18 0.0004 31.7 5.4 51 140-191 13-63 (599)
144 PTZ00373 60S Acidic ribosomal 63.0 43 0.00093 22.5 5.9 46 128-175 4-49 (112)
145 PF08726 EFhand_Ca_insen: Ca2+ 62.9 11 0.00025 22.9 2.9 29 51-80 4-32 (69)
146 PF00404 Dockerin_1: Dockerin 62.4 13 0.00028 16.9 2.4 16 137-152 1-16 (21)
147 KOG0039 Ferric reductase, NADH 61.3 22 0.00048 31.6 5.6 64 124-189 15-85 (646)
148 PF09068 EF-hand_2: EF hand; 60.9 13 0.00028 25.6 3.3 87 47-155 35-125 (127)
149 PF05517 p25-alpha: p25-alpha 60.8 57 0.0012 23.1 7.3 29 56-84 2-33 (154)
150 KOG1954 Endocytosis/signaling 60.2 13 0.00028 30.7 3.6 57 128-189 445-501 (532)
151 TIGR01848 PHA_reg_PhaR polyhyd 60.0 17 0.00038 24.1 3.6 22 134-155 10-31 (107)
152 PRK09430 djlA Dna-J like membr 59.7 80 0.0017 24.7 7.9 95 65-173 67-174 (267)
153 KOG0033 Ca2+/calmodulin-depend 58.7 5.5 0.00012 31.0 1.2 36 7-42 238-273 (355)
154 KOG2243 Ca2+ release channel ( 58.3 9.1 0.0002 36.9 2.7 50 58-108 4062-4118(5019)
155 PF07879 PHB_acc_N: PHB/PHA ac 55.4 21 0.00045 21.4 3.0 22 134-155 10-31 (64)
156 KOG0998 Synaptic vesicle prote 55.4 7.4 0.00016 35.6 1.7 63 126-192 10-72 (847)
157 PF11116 DUF2624: Protein of u 54.3 35 0.00075 21.7 4.1 32 142-175 13-44 (85)
158 PF12174 RST: RCD1-SRO-TAF4 (R 53.8 22 0.00047 21.7 3.1 22 170-191 30-51 (70)
159 KOG0506 Glutaminase (contains 53.6 29 0.00064 29.5 4.7 60 130-191 89-156 (622)
160 KOG2301 Voltage-gated Ca2+ cha 52.8 20 0.00043 35.2 4.1 64 47-112 1411-1486(1592)
161 PF05099 TerB: Tellurite resis 52.2 4.2 9.1E-05 28.0 -0.3 53 139-191 35-87 (140)
162 cd05833 Ribosomal_P2 Ribosomal 52.0 70 0.0015 21.4 5.9 45 129-175 3-47 (109)
163 COG4103 Uncharacterized protei 50.5 74 0.0016 22.4 5.6 87 57-155 34-129 (148)
164 TIGR03573 WbuX N-acetyl sugar 50.4 35 0.00075 27.7 4.7 44 140-191 299-342 (343)
165 PF13623 SurA_N_2: SurA N-term 50.1 33 0.00071 24.2 4.0 41 149-191 95-145 (145)
166 PF03979 Sigma70_r1_1: Sigma-7 47.1 26 0.00056 21.9 2.8 32 140-175 18-49 (82)
167 PF14513 DAG_kinase_N: Diacylg 46.7 66 0.0014 22.5 5.0 35 140-176 45-80 (138)
168 KOG4004 Matricellular protein 46.3 9.5 0.00021 28.4 0.8 55 133-191 193-248 (259)
169 PF01885 PTS_2-RNA: RNA 2'-pho 45.8 43 0.00093 24.7 4.2 38 137-176 26-63 (186)
170 KOG0719 Molecular chaperone (D 45.4 1.2E+02 0.0026 23.4 6.4 53 48-101 24-85 (264)
171 PF09069 EF-hand_3: EF-hand; 44.6 84 0.0018 20.2 8.4 73 53-155 3-75 (90)
172 PF09336 Vps4_C: Vps4 C termin 43.0 37 0.00081 20.0 2.9 27 143-171 29-55 (62)
173 KOG2871 Uncharacterized conser 42.9 32 0.0007 28.3 3.3 40 52-91 308-347 (449)
174 PRK00819 RNA 2'-phosphotransfe 42.8 54 0.0012 24.0 4.3 36 138-175 28-63 (179)
175 KOG3449 60S acidic ribosomal p 42.4 62 0.0013 21.6 4.0 56 55-111 3-61 (112)
176 PF08461 HTH_12: Ribonuclease 40.1 53 0.0012 19.6 3.3 38 139-178 9-46 (66)
177 PLN00138 large subunit ribosom 39.7 1.2E+02 0.0025 20.5 5.8 44 130-175 4-47 (113)
178 PF09068 EF-hand_2: EF hand; 39.5 1.2E+02 0.0025 20.9 5.3 65 126-190 40-122 (127)
179 PF04558 tRNA_synt_1c_R1: Glut 39.3 52 0.0011 23.7 3.7 48 124-174 82-129 (164)
180 PF07499 RuvA_C: RuvA, C-termi 39.1 68 0.0015 17.6 3.9 37 146-188 3-39 (47)
181 PLN02228 Phosphoinositide phos 38.9 1.7E+02 0.0037 25.7 7.3 33 48-82 19-51 (567)
182 cd08316 Death_FAS_TNFRSF6 Deat 38.1 1.1E+02 0.0025 19.9 6.5 76 69-172 17-93 (97)
183 PF08414 NADPH_Ox: Respiratory 37.6 1.2E+02 0.0026 19.9 5.9 57 126-190 29-89 (100)
184 KOG0042 Glycerol-3-phosphate d 36.9 32 0.00069 30.0 2.6 62 51-112 591-659 (680)
185 COG1308 EGD2 Transcription fac 36.5 1.4E+02 0.003 20.4 5.5 93 69-177 5-112 (122)
186 TIGR01639 P_fal_TIGR01639 Plas 35.6 95 0.002 18.2 4.0 32 141-174 7-38 (61)
187 PF12419 DUF3670: SNF2 Helicas 35.6 54 0.0012 22.8 3.3 53 138-190 78-138 (141)
188 KOG4403 Cell surface glycoprot 35.4 75 0.0016 26.7 4.4 31 125-155 66-96 (575)
189 PF06648 DUF1160: Protein of u 34.9 1.4E+02 0.0031 20.4 5.0 47 124-175 34-81 (122)
190 PF03683 UPF0175: Uncharacteri 34.3 82 0.0018 19.3 3.6 25 145-169 47-71 (76)
191 PRK00523 hypothetical protein; 34.0 1.2E+02 0.0025 18.7 5.3 43 129-174 26-68 (72)
192 PRK14981 DNA-directed RNA poly 33.9 89 0.0019 20.9 4.0 27 145-173 80-106 (112)
193 PRK09430 djlA Dna-J like membr 32.7 57 0.0012 25.5 3.3 49 139-190 67-117 (267)
194 PF03672 UPF0154: Uncharacteri 32.6 1.1E+02 0.0025 18.3 5.2 43 130-175 19-61 (64)
195 PF08730 Rad33: Rad33; InterP 32.6 2E+02 0.0042 20.9 8.0 37 49-86 10-46 (170)
196 PLN02222 phosphoinositide phos 32.3 2.7E+02 0.0058 24.7 7.4 32 49-82 21-52 (581)
197 TIGR02675 tape_meas_nterm tape 32.1 56 0.0012 20.0 2.6 38 66-103 27-73 (75)
198 PF09373 PMBR: Pseudomurein-bi 31.7 55 0.0012 16.5 2.1 16 141-156 2-17 (33)
199 KOG4070 Putative signal transd 31.3 59 0.0013 23.1 2.8 66 124-191 9-83 (180)
200 PHA02105 hypothetical protein 30.5 1.2E+02 0.0025 17.7 3.9 47 143-191 4-55 (68)
201 COG1460 Uncharacterized protei 30.1 92 0.002 21.0 3.4 29 144-174 80-108 (114)
202 cd08315 Death_TRAILR_DR4_DR5 D 30.1 1.6E+02 0.0034 19.1 8.8 89 52-172 3-91 (96)
203 cd07316 terB_like_DjlA N-termi 29.9 1.4E+02 0.003 19.0 4.4 7 142-148 14-20 (106)
204 COG3763 Uncharacterized protei 29.3 1.4E+02 0.003 18.2 5.4 44 129-175 25-68 (71)
205 COG5069 SAC6 Ca2+-binding acti 29.2 2.2E+02 0.0049 24.5 6.2 77 56-143 488-570 (612)
206 PF12631 GTPase_Cys_C: Catalyt 29.2 1.1E+02 0.0025 18.4 3.6 45 128-174 24-72 (73)
207 KOG2301 Voltage-gated Ca2+ cha 29.2 42 0.00092 33.1 2.3 67 124-190 1414-1481(1592)
208 PF09494 Slx4: Slx4 endonuclea 29.1 1.2E+02 0.0026 17.8 3.6 28 143-172 24-55 (64)
209 COG2818 Tag 3-methyladenine DN 28.6 69 0.0015 23.6 2.9 35 124-158 52-86 (188)
210 PF10668 Phage_terminase: Phag 28.5 78 0.0017 18.7 2.6 25 128-153 8-32 (60)
211 KOG2303 Predicted NAD synthase 28.4 2.7E+02 0.0058 24.3 6.5 20 63-82 535-554 (706)
212 KOG0871 Class 2 transcription 28.2 1.2E+02 0.0025 21.5 3.8 42 130-173 53-94 (156)
213 cd01671 CARD Caspase activatio 28.2 1.3E+02 0.0028 18.1 3.8 46 139-191 23-68 (80)
214 PF12486 DUF3702: ImpA domain 27.9 1.4E+02 0.003 21.2 4.3 31 126-156 68-98 (148)
215 PF11848 DUF3368: Domain of un 27.9 1.1E+02 0.0025 16.8 3.8 34 139-174 13-47 (48)
216 PRK01844 hypothetical protein; 26.8 1.6E+02 0.0035 18.1 5.1 43 129-174 25-67 (72)
217 cd04411 Ribosomal_P1_P2_L12p R 26.0 2E+02 0.0044 19.0 5.9 29 144-174 17-45 (105)
218 KOG4301 Beta-dystrobrevin [Cyt 26.0 75 0.0016 25.9 2.9 58 131-191 114-171 (434)
219 TIGR00135 gatC glutamyl-tRNA(G 25.7 1.5E+02 0.0033 18.8 3.9 27 144-172 1-27 (93)
220 KOG1785 Tyrosine kinase negati 24.8 4.2E+02 0.0092 22.3 8.2 81 65-156 186-275 (563)
221 PF02761 Cbl_N2: CBL proto-onc 24.4 2E+02 0.0043 18.3 5.5 49 139-190 18-67 (85)
222 PF02337 Gag_p10: Retroviral G 24.3 98 0.0021 19.9 2.7 24 149-174 14-37 (90)
223 PRK00034 gatC aspartyl/glutamy 23.5 1.8E+02 0.0039 18.4 4.0 28 143-172 2-29 (95)
224 PF08100 Dimerisation: Dimeris 23.1 85 0.0018 17.7 2.0 24 131-154 10-33 (51)
225 KOG0603 Ribosomal protein S6 k 23.1 57 0.0012 28.7 1.9 36 4-39 531-566 (612)
226 PF07492 Trehalase_Ca-bi: Neut 23.0 36 0.00079 17.0 0.4 17 169-185 3-19 (30)
227 PHA03155 hypothetical protein; 22.5 1.6E+02 0.0035 19.8 3.5 43 128-170 62-104 (115)
228 cd07176 terB tellurite resista 22.3 35 0.00077 22.1 0.4 16 141-156 16-31 (111)
229 KOG0032 Ca2+/calmodulin-depend 22.1 56 0.0012 27.0 1.6 34 7-40 264-297 (382)
230 TIGR02613 mob_myst_B mobile my 21.8 1.8E+02 0.0039 21.2 4.1 22 138-159 126-147 (186)
231 cd08332 CARD_CASP2 Caspase act 21.6 2E+02 0.0044 18.2 3.8 44 141-191 32-75 (90)
232 PF10437 Lip_prot_lig_C: Bacte 21.5 1.6E+02 0.0035 18.2 3.3 43 145-191 43-86 (86)
233 KOG4629 Predicted mechanosensi 20.8 1.8E+02 0.0039 26.4 4.5 59 124-191 401-459 (714)
234 COG0721 GatC Asp-tRNAAsn/Glu-t 20.8 2.1E+02 0.0044 18.6 3.7 29 143-173 2-30 (96)
235 PF07862 Nif11: Nitrogen fixat 20.6 1.6E+02 0.0034 16.1 2.8 21 145-167 28-48 (49)
236 KOG1264 Phospholipase C [Lipid 20.4 3E+02 0.0065 25.7 5.6 122 62-191 153-291 (1267)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.94 E-value=3.5e-26 Score=161.19 Aligned_cols=135 Identities=31% Similarity=0.420 Sum_probs=125.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc-----CCCCCCCch-hHHHHHhhcCCCCCCC
Q 039672 47 AGPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD-----LPGTGLEDE-VPVEEALGLGLGELDG 120 (192)
Q Consensus 47 ~~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~-----~~g~i~~~e-~~~~~~~~~~~~~~~~ 120 (192)
.+..+..+++++|..+|++++|.|++.+|..+++.+|.+++..++..++ +++.|+|.+ +.++.... ...
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~----~~~- 88 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKL----KRG- 88 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHh----ccC-
Confidence 3455668899999999999999999999999999999999999999999 359999999 99999988 443
Q ss_pred CCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 121 EGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 121 ~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
...+.+++||+.||.|++|+|+..++..+++.+|..+ ++++++.+++.+|.|++|.|+|++|++.+
T Consensus 89 ---~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~--~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 89 ---DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERL--SDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred ---CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccC--CHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 7789999999999999999999999999999999999 99999999999999999999999999865
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.92 E-value=3.5e-24 Score=152.91 Aligned_cols=138 Identities=36% Similarity=0.484 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc------CCCCCCCch-hHHHHHhhcCCCCCCCC
Q 039672 49 PVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD------LPGTGLEDE-VPVEEALGLGLGELDGE 121 (192)
Q Consensus 49 ~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~------~~g~i~~~e-~~~~~~~~~~~~~~~~~ 121 (192)
..+..+++.+|+.||++++|.|+..++..+++.+|..++..++..++ ++|.|++++ +.++..... ....
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~----~~~~ 79 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE----EKTD 79 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc----cccc
Confidence 34568999999999999999999999999999999999999999999 789999999 999987662 2100
Q ss_pred CCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhhC
Q 039672 122 GCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMMG 192 (192)
Q Consensus 122 ~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 192 (192)
.....+.++.||+.||.+++|+|+..||+.+|..+|.+. +.++++.+++.+|.|+||.|+|++|+++|.
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~--~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL--TDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC--CHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 001356999999999999999999999999999999999 999999999999999999999999999874
No 3
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.88 E-value=6.7e-22 Score=135.88 Aligned_cols=135 Identities=21% Similarity=0.342 Sum_probs=127.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc--CCCCCCCch-hHHHHHhhcCCCCCCCCCCC
Q 039672 48 GPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD--LPGTGLEDE-VPVEEALGLGLGELDGEGCG 124 (192)
Q Consensus 48 ~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~--~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~ 124 (192)
..-++.|++++|+.+|.|++|.|++++++..+.++|..++++++..++ .+|.|+|.- +.++...+ ... +
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL----~gt----d 98 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKL----NGT----D 98 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHh----cCC----C
Confidence 345679999999999999999999999999999999999999999999 899999999 99999999 555 7
Q ss_pred hHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhhC
Q 039672 125 RDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMMG 192 (192)
Q Consensus 125 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 192 (192)
.++-+..||+.||.+++|+|..+.|+.+|...|-+. ++++++.+++.+-.+..|.++|..|+..++
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~--~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRF--TDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccC--CHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 788999999999999999999999999999999999 999999999999999999999999998763
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=9.9e-22 Score=135.99 Aligned_cols=134 Identities=26% Similarity=0.306 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc------CCCCCCCch-hHHHHHhhcCCCCCCCC
Q 039672 49 PVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD------LPGTGLEDE-VPVEEALGLGLGELDGE 121 (192)
Q Consensus 49 ~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~------~~g~i~~~e-~~~~~~~~~~~~~~~~~ 121 (192)
+.+..+++..|..||++++|.|+.+||..+++.+|+.+...++.+++ ++|.|+|++ +..+...+ ...
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~----~e~-- 102 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKL----GER-- 102 (172)
T ss_pred HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHH----hcc--
Confidence 34458999999999999999999999999999999999999999988 689999999 88888877 444
Q ss_pred CCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhhC
Q 039672 122 GCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMMG 192 (192)
Q Consensus 122 ~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 192 (192)
+..+.++.+|+.+|.|++|+|+..+|+.+.+.+|.++ +++++.+++..+|.+++|.|+-++|...|+
T Consensus 103 --dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenl--tD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 103 --DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENL--TDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred --CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccc--cHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 7889999999999999999999999999999999999 999999999999999999999999998764
No 5
>PTZ00183 centrin; Provisional
Probab=99.85 E-value=3.2e-20 Score=133.07 Aligned_cols=134 Identities=25% Similarity=0.297 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc------CCCCCCCch-hHHHHHhhcCCCCCCCC
Q 039672 49 PVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD------LPGTGLEDE-VPVEEALGLGLGELDGE 121 (192)
Q Consensus 49 ~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~------~~g~i~~~e-~~~~~~~~~~~~~~~~~ 121 (192)
+.+..+++.+|..+|.+++|.|+..||..+++.+|..++...+..++ ++|.|+|.| +.++.... ...
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~----~~~-- 86 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL----GER-- 86 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh----cCC--
Confidence 34567899999999999999999999999999999888888888777 889999999 88877654 222
Q ss_pred CCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhhC
Q 039672 122 GCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMMG 192 (192)
Q Consensus 122 ~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 192 (192)
...+.++.+|+.+|.+++|.|+.+||..++..+|.++ ++.++..++..+|.+++|.|+|++|..+++
T Consensus 87 --~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l--~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 87 --DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETI--TDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred --CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 4567899999999999999999999999999999888 999999999999999999999999998873
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.84 E-value=1e-19 Score=128.97 Aligned_cols=133 Identities=28% Similarity=0.408 Sum_probs=118.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc------CCCCCCCch-hHHHHHhhcCCCCCCCC
Q 039672 49 PVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD------LPGTGLEDE-VPVEEALGLGLGELDGE 121 (192)
Q Consensus 49 ~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~------~~g~i~~~e-~~~~~~~~~~~~~~~~~ 121 (192)
..+..+++..|..+|.+++|.|+.++|..++..++.++...++..++ ++|.|+|++ +.++.... ...
T Consensus 7 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~----~~~-- 80 (149)
T PTZ00184 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKM----KDT-- 80 (149)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhc----cCC--
Confidence 34457888999999999999999999999999999888888887777 789999999 88887654 222
Q ss_pred CCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 122 GCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 122 ~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+..+|+.+|.+++|.|+.+||..++..+|.++ +.+++..++..+|.+++|.|+|++|+.++
T Consensus 81 --~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 81 --DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKL--TDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred --cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCC--CHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 4567889999999999999999999999999999888 99999999999999999999999999876
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.81 E-value=4.1e-19 Score=120.21 Aligned_cols=134 Identities=22% Similarity=0.310 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc----CC----CCCCCch-hHHHHHhhcCCCCCC
Q 039672 49 PVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD----LP----GTGLEDE-VPVEEALGLGLGELD 119 (192)
Q Consensus 49 ~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~----~~----g~i~~~e-~~~~~~~~~~~~~~~ 119 (192)
+.+..+++++|..||..++|+|+..+.-.+|+.+|.+|+..++.+.+ .+ .+++|++ +.++...-+.
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn----- 81 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN----- 81 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc-----
Confidence 44568999999999999999999999999999999999999999988 33 7899999 9999887632
Q ss_pred CCCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 120 GEGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 120 ~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
+....-+.+-+.++.||++++|.|...||+.+|-.+|..+ +++|++.++.-.. |.+|.|+|+.|++.+
T Consensus 82 -k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl--~eeEVe~Llag~e-D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 82 -KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL--TEEEVEELLAGQE-DSNGCINYEAFVKHI 149 (152)
T ss_pred -cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhc--cHHHHHHHHcccc-ccCCcCcHHHHHHHH
Confidence 2225677889999999999999999999999999999999 9999999998876 888999999999865
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.75 E-value=3e-17 Score=119.58 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC-CCHHHHhccc------CCCCCCCch-hHHHHHhhcCCCCCCCCC
Q 039672 51 DDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLI-YNEDEKSSFD------LPGTGLEDE-VPVEEALGLGLGELDGEG 122 (192)
Q Consensus 51 ~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~------~~g~i~~~e-~~~~~~~~~~~~~~~~~~ 122 (192)
+...+..+|...|.|.+|.|+.+|+.++|...+.. .+.+-++.++ .+|.|+|+| ..+|....
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~---------- 124 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN---------- 124 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH----------
Confidence 56789999999999999999999999999877665 4555555555 899999999 99996555
Q ss_pred CChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 123 CGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 123 ~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.|+.+|+.||.|++|.|+..||+++|..+|..+ +++-.+.+++.+|...+|.|.|++|++++
T Consensus 125 -----~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L--spq~~~~lv~kyd~~~~g~i~FD~FI~cc 186 (221)
T KOG0037|consen 125 -----QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRL--SPQFYNLLVRKYDRFGGGRIDFDDFIQCC 186 (221)
T ss_pred -----HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCC--CHHHHHHHHHHhccccCCceeHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999997779999999999986
No 9
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.73 E-value=6.1e-17 Score=118.15 Aligned_cols=148 Identities=20% Similarity=0.233 Sum_probs=121.3
Q ss_pred CChhhHHhhcccCCCCCHHHHHHHHHHhcCCC-CCcccHHHHHHHHHHhCCCCCHHHHhccc-------CCCCCCCch-h
Q 039672 35 NSTRECEQQTETAGPVDDLMLRALRAVFGMEK-NGKIKKERAKKVVEKLGLIYNEDEKSSFD-------LPGTGLEDE-V 105 (192)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~e~~~~F~~~D~~~-~g~l~~~e~~~~l~~~~~~~~~~~~~~~~-------~~g~i~~~e-~ 105 (192)
...+.....+...+..+..+++.+|+.|-.+. +|.++.++|+.+++++...-........+ ++|.|+|.| +
T Consensus 8 ~~~~~~~e~l~~~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi 87 (193)
T KOG0044|consen 8 KLQPESLEQLVQQTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFI 87 (193)
T ss_pred cCCcHHHHHHHHhcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence 33456677778889999999999999997665 99999999999999987655555444433 899999999 9
Q ss_pred HHHHHhhcCCCCCCCCCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHh----CC---C-CCC-CHHHHHHHHHhhcC
Q 039672 106 PVEEALGLGLGELDGEGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECL----GL---D-KGW-DMGEIEKMLKVVDL 176 (192)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~----g~---~-~~~-~~~~~~~~~~~~d~ 176 (192)
..+.....| ...++++.+|++||.||+|+|+++|+..++... |. + ... ..+.++.+++.+|.
T Consensus 88 ~als~~~rG---------t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~ 158 (193)
T KOG0044|consen 88 CALSLTSRG---------TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDK 158 (193)
T ss_pred HHHHHHcCC---------cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCC
Confidence 999998854 778899999999999999999999999888775 32 0 001 24557889999999
Q ss_pred CCCceeehHHHHHhh
Q 039672 177 NLDGKVDFCEFELMM 191 (192)
Q Consensus 177 ~~~g~i~~~eF~~~~ 191 (192)
|+||.||+++|....
T Consensus 159 n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 159 NKDGKLTLEEFIEGC 173 (193)
T ss_pred CCCCcccHHHHHHHh
Confidence 999999999998764
No 10
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.72 E-value=2.6e-16 Score=114.71 Aligned_cols=131 Identities=25% Similarity=0.335 Sum_probs=107.1
Q ss_pred CCHHHHH---HHHHHhcCC-CCCcccHHHHHHHHHHhCCCCCHHHHhccc---CCCC-CCCch-hHHHHHhhcCCCCCCC
Q 039672 50 VDDLMLR---ALRAVFGME-KNGKIKKERAKKVVEKLGLIYNEDEKSSFD---LPGT-GLEDE-VPVEEALGLGLGELDG 120 (192)
Q Consensus 50 ~~~~e~~---~~F~~~D~~-~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~---~~g~-i~~~e-~~~~~~~~~~~~~~~~ 120 (192)
++..|+. ..|..+|.+ ++|.++++||..+. .+..+|-...+...+ .++. |+|++ +..+.... ...
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~----~~~- 100 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFS----PKA- 100 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhc----CCc-
Confidence 4455554 556677888 89999999999999 477888888777777 5666 99999 99998877 333
Q ss_pred CCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHh-CCCCCCC--HHH----HHHHHHhhcCCCCceeehHHHHHhh
Q 039672 121 EGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECL-GLDKGWD--MGE----IEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 121 ~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-g~~~~~~--~~~----~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
...++++.||+.||.+++|+|+++|+.+++..+ |... + ++. ++.++..+|.|+||+|+|+||.+++
T Consensus 101 ---~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~--~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 101 ---SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGEND--DMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred ---cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCC--cchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 555799999999999999999999999999985 5444 4 444 4667888999999999999999876
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.60 E-value=1.5e-14 Score=114.28 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC-CCHHHHhccc------CCCCCCCch-hHHHHHhhcCCCCCCCC
Q 039672 50 VDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLI-YNEDEKSSFD------LPGTGLEDE-VPVEEALGLGLGELDGE 121 (192)
Q Consensus 50 ~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~------~~g~i~~~e-~~~~~~~~~~~~~~~~~ 121 (192)
....+++.+|..||.+++|.++..++...+..+..+ +..+-...++ .+|.+||+| ...+.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------------ 78 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------------ 78 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH------------
Confidence 345678899999999999999999999999988776 5555555555 899999999 88886
Q ss_pred CCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 122 GCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 122 ~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
..+..+..+|+.+|.++||.|+.+|+.+.|+.+|.++ ++++++.+++.+|+++++.|+++||.+++
T Consensus 79 --~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l--~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 79 --NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQL--SDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred --HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCcc--CHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 4455889999999999999999999999999999999 99999999999999999999999998865
No 12
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.57 E-value=2.1e-14 Score=114.26 Aligned_cols=179 Identities=18% Similarity=0.128 Sum_probs=127.0
Q ss_pred HHHHHHHhhccCCCCCCccccccCChhhHHhhcccCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hCCCCCHHH
Q 039672 12 IGDLVQAIGVSRPRSSSSHNIVTNSTRECEQQTETAGPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEK-LGLIYNEDE 90 (192)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~-~~~~~~~~~ 90 (192)
.+.++|.++++..+..+.......-..+..+.+.........++...|+.+|.+++|+|+..++..+++. +|.+++..-
T Consensus 423 ~PhfvQY~a~k~t~~~tlrqR~~~vEeSAlk~Lrerl~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~ 502 (631)
T KOG0377|consen 423 TPHFVQYQAAKQTKRLTLRQRMGIVEESALKELRERLRSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRL 502 (631)
T ss_pred CchHHHHHhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHH
Confidence 6677888766555443333323333334444444444445678899999999999999999999999987 478877766
Q ss_pred Hhccc----CCCCCCCch-hHHHHHhhcCCCCC--C---CCCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCC--
Q 039672 91 KSSFD----LPGTGLEDE-VPVEEALGLGLGEL--D---GEGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGL-- 158 (192)
Q Consensus 91 ~~~~~----~~g~i~~~e-~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~-- 158 (192)
+..-+ .+|.+.|.+ +..+..-... .. . ..+-.....+..+|+.+|.|++|.|+.+||.++++-++.
T Consensus 503 L~~kla~~s~d~~v~Y~~~~~~l~~e~~~--~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~ 580 (631)
T KOG0377|consen 503 LRPKLANGSDDGKVEYKSTLDNLDTEVIL--EEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM 580 (631)
T ss_pred hhhhccCCCcCcceehHhHHHHhhhhhHH--HHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc
Confidence 55544 678888877 6555432200 00 0 000023456889999999999999999999999988742
Q ss_pred CCCCCHHHHHHHHHhhcCCCCceeehHHHHHhhC
Q 039672 159 DKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMMG 192 (192)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 192 (192)
+..+++.++.++...+|.|+||+|++.||+++.+
T Consensus 581 ~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 581 NGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred CCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 2234899999999999999999999999998753
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.49 E-value=1.5e-13 Score=84.21 Aligned_cols=62 Identities=42% Similarity=0.717 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHH----HHHHHhhcCCCCceeehHHHHHhh
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEI----EKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~----~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
+++.+|+.+|.+++|+|+.+||+.++..++... ++.++ ..+++.+|.|++|.|+|+||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDM--SDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS--THHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999999766 55555 445999999999999999999875
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.49 E-value=7.2e-14 Score=90.22 Aligned_cols=66 Identities=27% Similarity=0.292 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHhc-cCCCcccHHHHHHHHHH-hCCCCCCCH-HHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDE-DGNGYIDASELKRVLEC-LGLDKGWDM-GEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~-~~~G~I~~~el~~~l~~-~g~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....++.+|+.||. +++|+|+..||+.++.. +|..+ ++ ++++.+++.+|.|+||+|+|+||+.+|
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l--s~~~~v~~mi~~~D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL--KDVEGLEEKMKNLDVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc--cCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 445688999999999 99999999999999999 88777 87 899999999999999999999999876
No 15
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.40 E-value=9.9e-13 Score=84.96 Aligned_cols=66 Identities=26% Similarity=0.417 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHHHh-ccCCC-cccHHHHHHHHHH-----hCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFD-EDGNG-YIDASELKRVLEC-----LGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~-----~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....++.+|+.|| .+++| +|+.+||+.+|+. +|... ++++++.+++.+|.|++|+|+|++|+.++
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~--~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIK--EQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 44568899999998 79999 6999999999999 88877 99999999999999999999999999876
No 16
>PLN02964 phosphatidylserine decarboxylase
Probab=99.32 E-value=1.3e-11 Score=104.89 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=73.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCCh
Q 039672 47 AGPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLG-LIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGR 125 (192)
Q Consensus 47 ~~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~ 125 (192)
....+..+++++|..+|+|++|.+ +..+++.+| ..++..+
T Consensus 137 f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e----------------------------------- 177 (644)
T PLN02964 137 FVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETE----------------------------------- 177 (644)
T ss_pred ccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHH-----------------------------------
Confidence 344566888999999999999997 888888888 4666543
Q ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 126 DELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 126 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
...++.+|+.+|.+++|.|+++||..++..++... +++++.++++.+|.|++|.|+++||.+++
T Consensus 178 ~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~--seEEL~eaFk~fDkDgdG~Is~dEL~~vL 241 (644)
T PLN02964 178 RSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLV--AANKKEELFKAADLNGDGVVTIDELAALL 241 (644)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCC--CHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence 12356666667777777777777777666666545 66667777777777777777777766654
No 17
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.28 E-value=1.3e-11 Score=80.70 Aligned_cols=66 Identities=30% Similarity=0.520 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHh-ccCCC-cccHHHHHHHHHH-h----CCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFD-EDGNG-YIDASELKRVLEC-L----GLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~-~----g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+..+|+.|| .|++| +|+..||+.++.. + +... ++.+++.++..+|.|++|.|+|+||+.++
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~--~~~~v~~i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQK--DPMLVDKIMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccccc--CHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 44567888999999 78998 5999999999977 3 3334 78899999999999999999999999876
No 18
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.28 E-value=1.5e-11 Score=80.70 Aligned_cols=66 Identities=35% Similarity=0.491 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHHhc-cC-CCcccHHHHHHHHHH-----hCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDE-DG-NGYIDASELKRVLEC-----LGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~-~~-~G~I~~~el~~~l~~-----~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....++.+|..||. ++ +|+|+.+||+.++.. +|..+ ++++++.++..+|.+++|.|+|++|+.++
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~--s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQK--DPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccc--cHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 445678999999997 97 799999999999986 46666 89999999999999999999999999876
No 19
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.27 E-value=1.7e-11 Score=80.10 Aligned_cols=66 Identities=33% Similarity=0.530 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHh-ccCCC-cccHHHHHHHHHH-hCC----CCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFD-EDGNG-YIDASELKRVLEC-LGL----DKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~-~g~----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
...+.++.+|+.|| .+++| +|+.+||+.+|+. +|. .+ ++++++.++..+|.+++|.|+|++|+.++
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~--s~~~v~~i~~~~D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQK--DADAVDKIMKELDENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 45678999999997 99999 5999999999986 543 44 88999999999999999999999999876
No 20
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.27 E-value=1.6e-11 Score=79.35 Aligned_cols=66 Identities=26% Similarity=0.430 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHhc-cC-CCcccHHHHHHHHHH---hCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDE-DG-NGYIDASELKRVLEC---LGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~-~~-~G~I~~~el~~~l~~---~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+-.+|..||. ++ +|+|+.+||+.++.. +|.++ ++++++++++.+|.|++|+|+|++|+.++
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~--t~~ev~~m~~~~D~d~dG~Idf~EFv~lm 77 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL--QDAEIAKLMEDLDRNKDQEVNFQEYVTFL 77 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Confidence 445577899999998 67 899999999999974 68888 99999999999999999999999999876
No 21
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.20 E-value=7.3e-11 Score=77.69 Aligned_cols=64 Identities=23% Similarity=0.397 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....++.+|+.+|.+++|.|+.+|++.++...| + ++++++.++..+|.+++|.|+|++|+.++
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~--~~~ev~~i~~~~d~~~~g~I~~~eF~~~~ 70 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--L--PQTLLAKIWNLADIDNDGELDKDEFALAM 70 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--C--CHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 4566899999999999999999999999999875 4 88899999999999999999999999876
No 22
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.20 E-value=6e-11 Score=72.58 Aligned_cols=58 Identities=31% Similarity=0.536 Sum_probs=54.0
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
+.+|+.+|.+++|.|+.+|++.++...|. +++++..++..+|.+++|.|+|++|+.++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~----~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL----PRSVLAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC----CHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 57999999999999999999999998864 78899999999999999999999999876
No 23
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.20 E-value=2.6e-10 Score=78.37 Aligned_cols=142 Identities=25% Similarity=0.313 Sum_probs=107.4
Q ss_pred hHHhhcccCCCCCHHHHHHHHHHh---cC-----CCCC------cccHHHHHHHHHHhCCCCCHHHHhccc---CCCCCC
Q 039672 39 ECEQQTETAGPVDDLMLRALRAVF---GM-----EKNG------KIKKERAKKVVEKLGLIYNEDEKSSFD---LPGTGL 101 (192)
Q Consensus 39 ~~~~~~~~~~~~~~~e~~~~F~~~---D~-----~~~g------~l~~~e~~~~l~~~~~~~~~~~~~~~~---~~g~i~ 101 (192)
..+...+.-+-++.+++.+++.+| .+ +-.| .+..+.+.. +..+.-+|-...++..+ +.|.++
T Consensus 11 eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~k-MPELkenpfk~ri~e~FSeDG~Gnls 89 (189)
T KOG0038|consen 11 EQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEK-MPELKENPFKRRICEVFSEDGRGNLS 89 (189)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhh-ChhhhcChHHHHHHHHhccCCCCccc
Confidence 334444555667788998888777 11 1111 233444333 44477788888888888 899999
Q ss_pred Cch-hHHHHHhhcCCCCCCCCCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCC-CCCCCHHHH----HHHHHhhc
Q 039672 102 EDE-VPVEEALGLGLGELDGEGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGL-DKGWDMGEI----EKMLKVVD 175 (192)
Q Consensus 102 ~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~-~~~~~~~~~----~~~~~~~d 175 (192)
|++ +.+++... ... +..-++.-||+.||-|+++.|...++.+.+..+.. .+ +++|+ +.++..+|
T Consensus 90 fddFlDmfSV~s----E~A----PrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eL--s~eEv~~i~ekvieEAD 159 (189)
T KOG0038|consen 90 FDDFLDMFSVFS----EMA----PRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDEL--SDEEVELICEKVIEEAD 159 (189)
T ss_pred HHHHHHHHHHHH----hhC----hHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHhc
Confidence 999 99988876 443 66778889999999999999999999999998753 34 77775 66888899
Q ss_pred CCCCceeehHHHHHhh
Q 039672 176 LNLDGKVDFCEFELMM 191 (192)
Q Consensus 176 ~~~~g~i~~~eF~~~~ 191 (192)
.|+||++++.+|..++
T Consensus 160 ~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 160 LDGDGKLSFAEFEHVI 175 (189)
T ss_pred CCCCCcccHHHHHHHH
Confidence 9999999999998875
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.19 E-value=1.4e-10 Score=70.89 Aligned_cols=65 Identities=29% Similarity=0.555 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHHHH
Q 039672 55 LRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKAFK 134 (192)
Q Consensus 55 ~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 134 (192)
++.+|+.+|.+++|.|+.+||..++..++...+..+ ..+.+..+|+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~ 47 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEE----------------------------------SDEMIDQIFR 47 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHH----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHH----------------------------------HHHHHHHHHH
Confidence 678999999999999999999999998866555433 2337788999
Q ss_pred HHhccCCCcccHHHHHHHH
Q 039672 135 IFDEDGNGYIDASELKRVL 153 (192)
Q Consensus 135 ~~D~~~~G~I~~~el~~~l 153 (192)
.+|.+++|.|+++||..++
T Consensus 48 ~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 48 EFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHTTTSSSSEEHHHHHHHH
T ss_pred HhCCCCcCCCcHHHHhccC
Confidence 9999999999999999875
No 25
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.19 E-value=9.3e-11 Score=83.58 Aligned_cols=66 Identities=39% Similarity=0.647 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....++.+|..||++++|+|+..||..+++.+|..+ ++.++..++..+|.+++|.|++++|+.++
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~--t~~el~~~~~~~D~dg~g~I~~~eF~~l~ 70 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNP--TEEELRDLIKEIDLDGDGTIDFEEFLDLM 70 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 4566899999999999999999999999999999998 99999999999999999999999999876
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.17 E-value=1.2e-10 Score=68.31 Aligned_cols=50 Identities=32% Similarity=0.555 Sum_probs=47.4
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 140 GNGYIDASELKRVLECLGLD-KGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 140 ~~G~I~~~el~~~l~~~g~~-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
++|.|+.++|+.++..+|.+ + +++++..++..+|.+++|.|+|+||+.++
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~--s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDL--SEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSS--CHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCC--CHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 47999999999999888998 8 99999999999999999999999999986
No 27
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.17 E-value=9.5e-11 Score=75.87 Aligned_cols=68 Identities=31% Similarity=0.427 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHHHhc--cCCCcccHHHHHHHHHH-hCCCC--CCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDE--DGNGYIDASELKRVLEC-LGLDK--GWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~--~~~G~I~~~el~~~l~~-~g~~~--~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
...+.++.+|..||. +++|.|+.+||..++.. +|.++ .+++.+++.++..+|.+++|.|+|++|+.++
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 455678999999999 89999999999999986 55433 1258999999999999999999999999876
No 28
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.17 E-value=1.1e-10 Score=75.52 Aligned_cols=66 Identities=30% Similarity=0.464 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHH-HhccCCC-cccHHHHHHHHHHh-----CCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKI-FDEDGNG-YIDASELKRVLECL-----GLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~-~D~~~~G-~I~~~el~~~l~~~-----g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+..+|+. +|.+|+| +|+.+||+.++... +... ++.+++.+++.+|.|+||+|+|+||+.+|
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~--~~~~~~~ll~~~D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQK--DPGVLDRMMKKLDLNSDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCC--CHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 455688999999 6788876 99999999999886 3344 68899999999999999999999999876
No 29
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.16 E-value=2.7e-10 Score=67.94 Aligned_cols=62 Identities=48% Similarity=0.777 Sum_probs=58.1
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhhC
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMMG 192 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 192 (192)
+..+|+.+|.+++|.|+.+|+..++..++.+. +.+.+..++..+|.+++|.|++++|+.+++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ef~~~~~ 63 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGL--SEEEIDEMIREVDKDGDGKIDFEEFLELMA 63 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC--CHHHHHHHHHHhCCCCCCeEeHHHHHHHhC
Confidence 57899999999999999999999999999888 999999999999999999999999998763
No 30
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.4e-10 Score=89.48 Aligned_cols=130 Identities=15% Similarity=0.014 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHH-HHhccc------CCCCCCCch-hHHHHHhhcCCCCCCCCCCCh
Q 039672 54 MLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNED-EKSSFD------LPGTGLEDE-VPVEEALGLGLGELDGEGCGR 125 (192)
Q Consensus 54 e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~-~~~~~~------~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~ 125 (192)
.-++-|+..|.|++|.++.+||..+|..-..+.... .+..-+ ++|.|+++| +.-+.... .....+++.
T Consensus 164 rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~----~~~~epeWv 239 (325)
T KOG4223|consen 164 RDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE----GNEEEPEWV 239 (325)
T ss_pred HHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc----CCCCCcccc
Confidence 345678888999999999999999886433222222 222222 899999999 88776655 222223344
Q ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHH
Q 039672 126 DELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFEL 189 (192)
Q Consensus 126 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 189 (192)
...-...|...|+|+||+++.+|++.++..-+... ...+..-++...|.|+||++|++|.+.
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~--A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDH--AKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhcccCCCCccH--HHHHHHHHhhhhccCccccccHHHHhh
Confidence 55556788888999999999999999997777766 788999999999999999999999875
No 31
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.12 E-value=6.4e-10 Score=81.46 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=89.9
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHhccc-------CCCCCCCch-hHHHHHhhcCCCCCCCCCCChHHHHHHHHHHHhccC
Q 039672 69 KIKKERAKKVVEKLGLIYNEDEKSSFD-------LPGTGLEDE-VPVEEALGLGLGELDGEGCGRDELLRKAFKIFDEDG 140 (192)
Q Consensus 69 ~l~~~e~~~~l~~~~~~~~~~~~~~~~-------~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~ 140 (192)
.+.++.+..+.. ....+..+++.+. ++|.++.++ ..+++... ... ........+|+.||.++
T Consensus 8 ~~~~~~~e~l~~--~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~f----p~g----d~~~y~~~vF~~fD~~~ 77 (193)
T KOG0044|consen 8 KLQPESLEQLVQ--QTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFF----PDG----DASKYAELVFRTFDKNK 77 (193)
T ss_pred cCCcHHHHHHHH--hcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHC----CCC----CHHHHHHHHHHHhcccC
Confidence 344444444443 2356666776666 799999999 88888776 222 67888999999999999
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 141 NGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 141 ~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
+|.|+..||...+..+-... .++.+++.++.+|.|+||.|+++|++.++
T Consensus 78 dg~i~F~Efi~als~~~rGt--~eekl~w~F~lyD~dgdG~It~~Eml~iv 126 (193)
T KOG0044|consen 78 DGTIDFLEFICALSLTSRGT--LEEKLKWAFRLYDLDGDGYITKEEMLKIV 126 (193)
T ss_pred CCCcCHHHHHHHHHHHcCCc--HHHHhhhhheeecCCCCceEcHHHHHHHH
Confidence 99999999999999887666 78889999999999999999999999875
No 32
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.08 E-value=4.6e-10 Score=79.59 Aligned_cols=65 Identities=37% Similarity=0.648 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
...+.++++|..+|.+++|.|++.+|..+++.+|.++ ++.++..++..+|. +++.|+|.+|+.+|
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~--s~~ei~~l~~~~d~-~~~~idf~~Fl~~m 81 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNP--SEAEINKLFEEIDA-GNETVDFPEFLTVM 81 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCC--cHHHHHHHHHhccC-CCCccCHHHHHHHH
Confidence 5567899999999999999999999999999999999 99999999999998 88999999999886
No 33
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.04 E-value=9.2e-10 Score=74.51 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+..+|..+|.|+||+|+.+||..+. + .. .+..+..++..+|.|+||.||++||..++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~--~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DP--NEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cc--hHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 345688999999999999999999999876 2 22 56778999999999999999999999875
No 34
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.99 E-value=1.3e-09 Score=79.96 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc------CCCCCCCch-hHHHHHhhcCCCCCCCCCCCh
Q 039672 53 LMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD------LPGTGLEDE-VPVEEALGLGLGELDGEGCGR 125 (192)
Q Consensus 53 ~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~------~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~ 125 (192)
+.|+.+|+.+|.|++|.|+..||+.+|..+|+.++.+-...++ .+|.|.|++ +.++..+.
T Consensus 124 ~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~------------- 190 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ------------- 190 (221)
T ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH-------------
Confidence 5667888999999999999999999999999999999888777 389999999 99996655
Q ss_pred HHHHHHHHHHHhccCCCccc--HHHHHHH
Q 039672 126 DELLRKAFKIFDEDGNGYID--ASELKRV 152 (192)
Q Consensus 126 ~~~~~~~F~~~D~~~~G~I~--~~el~~~ 152 (192)
.+.++|+.+|.+.+|.|+ +++|..+
T Consensus 191 --~lt~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 191 --RLTEAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred --HHHHHHHHhccccceeEEEeHHHHHHH
Confidence 788999999999999765 5565543
No 35
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.5e-09 Score=83.89 Aligned_cols=140 Identities=20% Similarity=0.124 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHH-Hhccc-----CCCCCCCch-hHHHHHhhcC-CC--CCC-
Q 039672 51 DDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDE-KSSFD-----LPGTGLEDE-VPVEEALGLG-LG--ELD- 119 (192)
Q Consensus 51 ~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~-~~~~~-----~~g~i~~~e-~~~~~~~~~~-~~--~~~- 119 (192)
....+..++..+|.+++|.|+..++...+...-......+ .+.+. .+|.|+|++ ...+.....+ .. ...
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 5577888999999999999999999887765433333333 33333 899999999 6666543200 00 000
Q ss_pred -CCCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 120 -GEGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 120 -~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
..-......-+.-|+.-|.|++|.++++||...|..-..+ ++.+-.+.+-+...|+|+||+|+++||+.-|
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p-~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHP-HMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcc-hHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 0000112345677999999999999999999999664432 2345667888999999999999999998643
No 36
>PF14658 EF-hand_9: EF-hand domain
Probab=98.95 E-value=2.9e-09 Score=63.91 Aligned_cols=60 Identities=25% Similarity=0.414 Sum_probs=56.1
Q ss_pred HHHHHHhccCCCcccHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhcCCCC-ceeehHHHHHhhC
Q 039672 131 KAFKIFDEDGNGYIDASELKRVLECLGL-DKGWDMGEIEKMLKVVDLNLD-GKVDFCEFELMMG 192 (192)
Q Consensus 131 ~~F~~~D~~~~G~I~~~el~~~l~~~g~-~~~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~~~ 192 (192)
.+|..||.++.|.|...++..+|+.++. .+ ++.+++.+...+|.++. |.|+++.|+..|+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p--~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSP--EESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCC--cHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4799999999999999999999999987 76 89999999999999998 9999999998874
No 37
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.95 E-value=2.3e-09 Score=69.32 Aligned_cols=66 Identities=23% Similarity=0.313 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHhcc--CCCcccHHHHHHHHH-HhCCCCCCC----HHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDED--GNGYIDASELKRVLE-CLGLDKGWD----MGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~--~~G~I~~~el~~~l~-~~g~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+...|+.|+.. ++|+|+.+||+.+|. .+|..+ + +++++.++..+|.+++|.|+|++|+.++
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~--t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFL--KKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhh--ccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 4456788899999866 489999999999997 556555 5 8999999999999999999999999876
No 38
>PTZ00183 centrin; Provisional
Probab=98.92 E-value=6.4e-09 Score=74.21 Aligned_cols=66 Identities=41% Similarity=0.684 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+..+|..+|.+++|.|+.+||..++..+|.++ +..++..++..+|.+++|.|+|++|+.++
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~--~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 79 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEP--KKEEIKQMIADVDKDGSGKIDFEEFLDIM 79 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC--CHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 4567889999999999999999999999999998877 88899999999999999999999998764
No 39
>PTZ00184 calmodulin; Provisional
Probab=98.90 E-value=5.6e-09 Score=73.63 Aligned_cols=66 Identities=35% Similarity=0.625 Sum_probs=60.1
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
...+.++.+|..+|.+++|.|+.+||..++..++..+ +.+++..++..+|.+++|.|+|++|+.++
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 73 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP--TEAELQDMINEVDADGNGTIDFPEFLTLM 73 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCC--CHHHHHHHHHhcCcCCCCcCcHHHHHHHH
Confidence 4456788999999999999999999999999999877 88899999999999999999999999865
No 40
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=8.3e-09 Score=72.12 Aligned_cols=66 Identities=36% Similarity=0.589 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
...+.++.+|..||.+++|+|+.+||+-++..+|... ..+++..++..+|.++.|+|+|++|...|
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~--~k~ei~kll~d~dk~~~g~i~fe~f~~~m 95 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEP--KKEEILKLLADVDKEGSGKITFEDFRRVM 95 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCc--chHHHHHHHHhhhhccCceechHHHHHHH
Confidence 4457899999999999999999999999999999988 99999999999999999999999999876
No 41
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.82 E-value=3.6e-08 Score=63.66 Aligned_cols=68 Identities=12% Similarity=0.095 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcC-CCCCcccHHHHHHHHHH-hCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHH
Q 039672 52 DLMLRALRAVFGM-EKNGKIKKERAKKVVEK-LGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELL 129 (192)
Q Consensus 52 ~~e~~~~F~~~D~-~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (192)
...+..+|+.||+ +++|+|+..||+.++++ +|..++. .+.+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~-------------------------------------~~~v 49 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKD-------------------------------------VEGL 49 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccC-------------------------------------HHHH
Confidence 4678899999999 99999999999999987 5432221 1467
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
..+++..|.|++|.|+++||..++..+
T Consensus 50 ~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 50 EEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 888999999999999999999998776
No 42
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.79 E-value=1.6e-08 Score=73.20 Aligned_cols=65 Identities=40% Similarity=0.620 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELM 190 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 190 (192)
.....+..+|+.||.+.||+|+..||+.+|.++|.+. |.--+..+++..|.|.||+|+|.+|+-.
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQ--THL~lK~mikeVded~dgklSfreflLI 160 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQ--THLGLKNMIKEVDEDFDGKLSFREFLLI 160 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCch--hhHHHHHHHHHhhcccccchhHHHHHHH
Confidence 3456788999999999999999999999999999988 8878899999999999999999999754
No 43
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.70 E-value=2.5e-08 Score=50.42 Aligned_cols=29 Identities=45% Similarity=0.781 Sum_probs=24.8
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
.++.+|+.||+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 36789999999999999999999988764
No 44
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.69 E-value=1.4e-07 Score=85.04 Aligned_cols=128 Identities=19% Similarity=0.190 Sum_probs=99.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCC-------HHHHhccc------CCCCCCCch-hHHHHHhh
Q 039672 47 AGPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYN-------EDEKSSFD------LPGTGLEDE-VPVEEALG 112 (192)
Q Consensus 47 ~~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~-------~~~~~~~~------~~g~i~~~e-~~~~~~~~ 112 (192)
+++.+..|+..+|+.||++.+|.++..+|+.||+++|++++ +.++..++ .+|.|+..+ +++|...-
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 45566789999999999999999999999999999999863 22555555 789999999 99998755
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhh----cCC----CCceeeh
Q 039672 113 LGLGELDGEGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVV----DLN----LDGKVDF 184 (192)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~----d~~----~~g~i~~ 184 (192)
. .+- .....+..||+.+|. +..||+.+++.+.| |.++++-++..+ +.. ..+.++|
T Consensus 2327 T---eNI----~s~~eIE~AfraL~a-~~~yvtke~~~~~l---------treqaefc~s~m~~~~e~~~~~s~q~~l~y 2389 (2399)
T KOG0040|consen 2327 T---ENI----LSSEEIEDAFRALDA-GKPYVTKEELYQNL---------TREQAEFCMSKMKPYAETSSGRSDQVALDY 2389 (2399)
T ss_pred c---ccc----cchHHHHHHHHHhhc-CCccccHHHHHhcC---------CHHHHHHHHHHhhhhcccccCCCccccccH
Confidence 3 121 334599999999999 88999999998876 777776666554 332 2345899
Q ss_pred HHHHHhh
Q 039672 185 CEFELMM 191 (192)
Q Consensus 185 ~eF~~~~ 191 (192)
.+|++.+
T Consensus 2390 ~dfv~sl 2396 (2399)
T KOG0040|consen 2390 KDFVNSL 2396 (2399)
T ss_pred HHHHHHH
Confidence 9998753
No 45
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.68 E-value=1.1e-07 Score=77.54 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=95.6
Q ss_pred CCCCCHHHHHHHHHHh---cCCCCCcccHHHHHH-HHHHhCCCCCHHHHhccc-------CCCCCCCch-hHHHHHhhcC
Q 039672 47 AGPVDDLMLRALRAVF---GMEKNGKIKKERAKK-VVEKLGLIYNEDEKSSFD-------LPGTGLEDE-VPVEEALGLG 114 (192)
Q Consensus 47 ~~~~~~~e~~~~F~~~---D~~~~g~l~~~e~~~-~l~~~~~~~~~~~~~~~~-------~~g~i~~~e-~~~~~~~~~~ 114 (192)
....+..+++.+|-.+ +.++...+++++|.+ .+..++.+-...++..++ ++|.|+|+| +++-..++
T Consensus 27 lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC-- 104 (694)
T KOG0751|consen 27 LKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC-- 104 (694)
T ss_pred hccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc--
Confidence 3456778999888666 567788899999965 455556665566666666 899999999 98888887
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCC-HHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 115 LGELDGEGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWD-MGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~-~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
........+|..||..++|.+|.+++..++.......+.+ +.+.+.+-..+..+..-.++|.+|.+++
T Consensus 105 ---------~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~l 173 (694)
T KOG0751|consen 105 ---------APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFL 173 (694)
T ss_pred ---------CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHH
Confidence 7788999999999999999999999999999875433111 1111112223333334456777776654
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.67 E-value=2.7e-07 Score=60.22 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhc-CCCCC-cccHHHHHHHHHHh-CCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHH
Q 039672 52 DLMLRALRAVFG-MEKNG-KIKKERAKKVVEKL-GLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDEL 128 (192)
Q Consensus 52 ~~e~~~~F~~~D-~~~~g-~l~~~e~~~~l~~~-~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 128 (192)
...+.++|+.|| .|++| +|+..||+.++... +..+. .. .....
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~------------------------------~~----~~~~~ 54 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLS------------------------------SQ----KDPML 54 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcc------------------------------cc----cCHHH
Confidence 467889999998 78998 59999999999752 11100 00 34457
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHhC
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLECLG 157 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~~g 157 (192)
+..+++.+|.+++|.|+++||..++..+.
T Consensus 55 v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 55 VDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 88999999999999999999999998763
No 47
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.64 E-value=1.6e-07 Score=61.72 Aligned_cols=68 Identities=22% Similarity=0.371 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHH
Q 039672 49 PVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDEL 128 (192)
Q Consensus 49 ~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 128 (192)
..+..+++.+|..+|.+++|.|+.++++.+++..+ ...+.
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~----------------------------------------~~~~e 45 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG----------------------------------------LPQTL 45 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC----------------------------------------CCHHH
Confidence 34567899999999999999999999999998542 12235
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
+..+|..+|.+++|.|+++||..++...
T Consensus 46 v~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 46 LAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 6788999999999999999999988764
No 48
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.58 E-value=3.1e-07 Score=63.96 Aligned_cols=62 Identities=27% Similarity=0.562 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.+.+.+++||.++|+++||.|+.++|+..+..+|..+ ++++++.|+..+. |-|+|-.|+-++
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~--~d~elDaM~~Ea~----gPINft~FLTmf 90 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIA--SDEELDAMMKEAP----GPINFTVFLTMF 90 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCC--CHHHHHHHHHhCC----CCeeHHHHHHHH
Confidence 5577899999999999999999999999999999988 9999998877654 567777776543
No 49
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.57 E-value=8.2e-07 Score=57.83 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-hCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHH
Q 039672 52 DLMLRALRAVFG-MEKNG-KIKKERAKKVVEK-LGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDEL 128 (192)
Q Consensus 52 ~~e~~~~F~~~D-~~~~g-~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 128 (192)
..+++++|+.|| .+++| .|+..||+.+|+. +|..++. . ...+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~------------------------------~----~s~~~ 53 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDA------------------------------Q----KDADA 53 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccC------------------------------C----CCHHH
Confidence 467899999997 99999 5999999999974 4321100 0 34457
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHhC
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLECLG 157 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~~g 157 (192)
+..+|+.+|.+++|.|+++||..++..+.
T Consensus 54 v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 54 VDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 88899999999999999999999887653
No 50
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.55 E-value=3.7e-07 Score=59.72 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH-h----CCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCC
Q 039672 52 DLMLRALRAVFGM-EK-NGKIKKERAKKVVEK-L----GLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCG 124 (192)
Q Consensus 52 ~~e~~~~F~~~D~-~~-~g~l~~~e~~~~l~~-~----~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~ 124 (192)
...++.+|..||. ++ +|.|+..|++.+++. + |.. .
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~--------------------------------------~ 48 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQ--------------------------------------K 48 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcc--------------------------------------c
Confidence 4678999999997 87 799999999999985 2 212 2
Q ss_pred hHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCC
Q 039672 125 RDELLRKAFKIFDEDGNGYIDASELKRVLECLGL 158 (192)
Q Consensus 125 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~ 158 (192)
..+.+..+|+.+|.+++|.|+++||.+++...++
T Consensus 49 s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 49 DPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3457788899999999999999999999987654
No 51
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.54 E-value=1.4e-07 Score=48.62 Aligned_cols=30 Identities=57% Similarity=1.059 Sum_probs=26.3
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHH-HhC
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLE-CLG 157 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~-~~g 157 (192)
+++.+|+.||.+++|+|+.+||+.+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 468999999999999999999999998 565
No 52
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.53 E-value=2.9e-07 Score=59.43 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHhccc------CCCCCCCch-hHHHHHhh
Q 039672 52 DLMLRALRAVFG-MEKNG-KIKKERAKKVVEK-----LGLIYNEDEKSSFD------LPGTGLEDE-VPVEEALG 112 (192)
Q Consensus 52 ~~e~~~~F~~~D-~~~~g-~l~~~e~~~~l~~-----~~~~~~~~~~~~~~------~~g~i~~~e-~~~~~~~~ 112 (192)
..+++.+|+.|| .+++| .|+..+|+.+|+. +|..+++.++..++ ++|.|+|+| +.++....
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 468899999998 79999 5999999999999 88889999999988 789999999 98887644
No 53
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.51 E-value=7.3e-07 Score=57.36 Aligned_cols=65 Identities=25% Similarity=0.405 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHH-h----CCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLEC-L----GLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~-~----g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+..+|+.|- .+.|+++..||+.++.. + +... ++..++.+++..|.|+||+|+|.||+.++
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~--d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQN--DPMAVDKIMKDLDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 44557788999997 45679999999999975 2 3333 67889999999999999999999999876
No 54
>PLN02964 phosphatidylserine decarboxylase
Probab=98.51 E-value=1.1e-06 Score=75.47 Aligned_cols=80 Identities=18% Similarity=0.356 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHHH
Q 039672 54 MLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKAF 133 (192)
Q Consensus 54 e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~F 133 (192)
.++.+|+.+|.+++|.|+..||..++..++.. ...+.++.+|
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~--------------------------------------~seEEL~eaF 221 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNL--------------------------------------VAANKKEELF 221 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccC--------------------------------------CCHHHHHHHH
Confidence 48999999999999999999999988755321 3455789999
Q ss_pred HHHhccCCCcccHHHHHHHHHH-------------hCCCCCCCH-HHHHHHHHh
Q 039672 134 KIFDEDGNGYIDASELKRVLEC-------------LGLDKGWDM-GEIEKMLKV 173 (192)
Q Consensus 134 ~~~D~~~~G~I~~~el~~~l~~-------------~g~~~~~~~-~~~~~~~~~ 173 (192)
+.||.|++|+|+.+||+.++.. +|.++ +. ++++.++..
T Consensus 222 k~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l--~~~~~~~~iiH~ 273 (644)
T PLN02964 222 KAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEAL--GVSDKLNAMIHM 273 (644)
T ss_pred HHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcc--cchhhHHHHHHH
Confidence 9999999999999999999998 66655 54 566776644
No 55
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.49 E-value=8.2e-07 Score=53.96 Aligned_cols=61 Identities=20% Similarity=0.373 Sum_probs=50.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHHHHH
Q 039672 56 RALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKAFKI 135 (192)
Q Consensus 56 ~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~ 135 (192)
+++|..+|++++|.|+..|+..++..+|. ..+.+..+|+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~----------------------------------------~~~~~~~i~~~ 41 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL----------------------------------------PRSVLAQIWDL 41 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC----------------------------------------CHHHHHHHHHH
Confidence 57899999999999999999999986532 12356778899
Q ss_pred HhccCCCcccHHHHHHHHHHh
Q 039672 136 FDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 136 ~D~~~~G~I~~~el~~~l~~~ 156 (192)
+|.+++|.|+.+||..++...
T Consensus 42 ~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 42 ADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hcCCCCCcCCHHHHHHHHHHH
Confidence 999999999999999888654
No 56
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.49 E-value=2.4e-07 Score=46.81 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 039672 54 MLRALRAVFGMEKNGKIKKERAKKVVEKL 82 (192)
Q Consensus 54 e~~~~F~~~D~~~~g~l~~~e~~~~l~~~ 82 (192)
|++.+|+.+|+|++|.|+.+||..+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 67899999999999999999999999864
No 57
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.48 E-value=5.6e-07 Score=61.62 Aligned_cols=66 Identities=32% Similarity=0.457 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCC--CceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNL--DGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~--~g~i~~~eF~~~~ 191 (192)
+..+.++++|..||..+||+|+..++-.+|+.+|.++ |+.++...+...+.+. -..|+|++|+-++
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nP--T~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~ 75 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNP--TNAEVLKVLGQPKRREMNVKRLDFEEFLPMY 75 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCC--cHHHHHHHHcCcccchhhhhhhhHHHHHHHH
Confidence 6678999999999999999999999999999999999 9999999998888773 3468888887554
No 58
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.47 E-value=1.1e-06 Score=56.72 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHhcC--CCCCcccHHHHHHHHHH-hCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHH
Q 039672 51 DDLMLRALRAVFGM--EKNGKIKKERAKKVVEK-LGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDE 127 (192)
Q Consensus 51 ~~~e~~~~F~~~D~--~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~ 127 (192)
+..+++.+|..||+ +++|.|+..+|..+++. +|..++. . ...+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~------------------------------~----~~~~ 51 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKN------------------------------Q----KDPE 51 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccC------------------------------C----CCHH
Confidence 45788999999999 89999999999999975 3322210 0 2344
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
.+..++..+|.+++|.|++++|..++...
T Consensus 52 ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 52 AVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 67888999999999999999999988765
No 59
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.46 E-value=8.6e-07 Score=51.68 Aligned_cols=51 Identities=33% Similarity=0.695 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHHhCCC-CCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHHHHHHhccCCCccc
Q 039672 67 NGKIKKERAKKVVEKLGLI-YNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKAFKIFDEDGNGYID 145 (192)
Q Consensus 67 ~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~ 145 (192)
+|.|+.++|+.++..+|.. ++.+ .+..+|..+|.+++|+|+
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~--------------------------------------e~~~l~~~~D~~~~G~I~ 43 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEE--------------------------------------EVDRLFREFDTDGDGYIS 43 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHH--------------------------------------HHHHHHHHHTTSSSSSEE
T ss_pred cCEECHHHHHHHHHHhCCCCCCHH--------------------------------------HHHHHHHhcccCCCCCCC
Confidence 6788888888888666665 4443 467799999999999999
Q ss_pred HHHHHHHHHH
Q 039672 146 ASELKRVLEC 155 (192)
Q Consensus 146 ~~el~~~l~~ 155 (192)
++||..++..
T Consensus 44 ~~EF~~~~~~ 53 (54)
T PF13833_consen 44 FDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 60
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.45 E-value=1.2e-06 Score=64.13 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCCCCc-ccHHHHHHHHHHhCCCCCHH-HHhccc------CCCCCCCch-hHHHHHhhcCCCCCCC-CCCC
Q 039672 55 LRALRAVFGMEKNGK-IKKERAKKVVEKLGLIYNED-EKSSFD------LPGTGLEDE-VPVEEALGLGLGELDG-EGCG 124 (192)
Q Consensus 55 ~~~~F~~~D~~~~g~-l~~~e~~~~l~~~~~~~~~~-~~~~~~------~~g~i~~~e-~~~~~~~~~~~~~~~~-~~~~ 124 (192)
..+++..|+.+++|. |+.++|...+..+-.+-+.+ .++-.+ ++|.|+.+| ..++..... .... -.+.
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~---~~~~~~~e~ 144 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG---ENDDMSDEQ 144 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc---cCCcchHHH
Confidence 357888899888888 99999999998764444433 333222 899999999 888877662 1110 0113
Q ss_pred hHHHHHHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 125 RDELLRKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 125 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
....+...|..+|.|+||+|+.+|+..++...
T Consensus 145 ~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 145 LEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 45667889999999999999999999998664
No 61
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.44 E-value=1.3e-06 Score=59.13 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHH
Q 039672 49 PVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDEL 128 (192)
Q Consensus 49 ~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 128 (192)
+....++.-.|..+|.|++|.|+.+|+..+. + . .....
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~--------------------------------------~~e~~ 81 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--D--------------------------------------PNEHC 81 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--c--------------------------------------chHHH
Confidence 3456788899999999999999999998754 1 0 33446
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHH
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVL 153 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l 153 (192)
+...|..+|.+++|.||++|+...+
T Consensus 82 ~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 82 IKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 7889999999999999999999998
No 62
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.43 E-value=1.8e-06 Score=50.95 Aligned_cols=61 Identities=26% Similarity=0.455 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHHHH
Q 039672 55 LRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKAFK 134 (192)
Q Consensus 55 ~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 134 (192)
+..+|..+|.+++|.|+..++..+++.++.+. ..+.+..+|+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~--------------------------------------~~~~~~~~~~ 43 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGL--------------------------------------SEEEIDEMIR 43 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC--------------------------------------CHHHHHHHHH
Confidence 56789999999999999999999998775433 3345667899
Q ss_pred HHhccCCCcccHHHHHHHH
Q 039672 135 IFDEDGNGYIDASELKRVL 153 (192)
Q Consensus 135 ~~D~~~~G~I~~~el~~~l 153 (192)
.+|.+++|.|+.++|..++
T Consensus 44 ~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 44 EVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HhCCCCCCeEeHHHHHHHh
Confidence 9999999999999998765
No 63
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.43 E-value=1.6e-07 Score=75.41 Aligned_cols=85 Identities=27% Similarity=0.325 Sum_probs=64.1
Q ss_pred CCCCCCCch-hHHHHHhhcCCCCCCCCCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHh------CCC----C--CC
Q 039672 96 LPGTGLEDE-VPVEEALGLGLGELDGEGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECL------GLD----K--GW 162 (192)
Q Consensus 96 ~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~------g~~----~--~~ 162 (192)
.+|.|+|.| +-++..+- .....++.||++||.||||.|+.+||..+..-. |.. . ..
T Consensus 212 ~~GLIsfSdYiFLlTlLS-----------~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~ 280 (489)
T KOG2643|consen 212 ESGLISFSDYIFLLTLLS-----------IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGN 280 (489)
T ss_pred CCCeeeHHHHHHHHHHHc-----------cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccc
Confidence 799999999 88887766 556688999999999999999999999987533 210 0 00
Q ss_pred C-HHHHHH--HHHhhcCCCCceeehHHHHHhh
Q 039672 163 D-MGEIEK--MLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 163 ~-~~~~~~--~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
+ ..+++. ....+.+++++++++++|++++
T Consensus 281 s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 281 SFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred eehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 1 113333 3334688999999999999876
No 64
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.38 E-value=8.7e-07 Score=71.34 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHh-CCCCCHH-----HHhccc--CCCCCCCch-hHHHHHhhcCCCCCCCCCCCh
Q 039672 55 LRALRAVFGMEKNGKIKKERAKKVVEKL-GLIYNED-----EKSSFD--LPGTGLEDE-VPVEEALGLGLGELDGEGCGR 125 (192)
Q Consensus 55 ~~~~F~~~D~~~~g~l~~~e~~~~l~~~-~~~~~~~-----~~~~~~--~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~ 125 (192)
++.-|..+|+..+|.|+..+|..+|-.+ +.+.... .+++-+ ....|+++| .+++.-. ..
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl------------~~ 387 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFKAFFRFL------------NN 387 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHHHHHHHH------------hh
Confidence 3455888899888999999998866443 3333322 222222 367899999 7766543 33
Q ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHH-hCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhhC
Q 039672 126 DELLRKAFKIFDEDGNGYIDASELKRVLEC-LGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMMG 192 (192)
Q Consensus 126 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 192 (192)
.+.+..|...| ..-.+.|+..+|+++.+. .|+++ ++..++-++.-+|.|+||.++++||+.+|+
T Consensus 388 l~dfd~Al~fy-~~Ag~~i~~~~f~raa~~vtGveL--SdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk 452 (489)
T KOG2643|consen 388 LNDFDIALRFY-HMAGASIDEKTFQRAAKVVTGVEL--SDHVVDVVFTIFDENNDGTLSHKEFLAVMK 452 (489)
T ss_pred hhHHHHHHHHH-HHcCCCCCHHHHHHHHHHhcCccc--ccceeeeEEEEEccCCCCcccHHHHHHHHH
Confidence 44666777777 345589999999999887 58888 988899999999999999999999999874
No 65
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.37 E-value=2.2e-06 Score=56.88 Aligned_cols=63 Identities=24% Similarity=0.461 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+..+|...|. ++|.|+.++.+.+|...|. +.+.+..++..+|.+++|+++++||+-+|
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L----~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL----PRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS----SHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC----CHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 566789999999985 6899999999999999876 78899999999999999999999999876
No 66
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.33 E-value=4.8e-06 Score=53.71 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChH
Q 039672 52 DLMLRALRAVFGM-EK-NGKIKKERAKKVVEK---LGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRD 126 (192)
Q Consensus 52 ~~e~~~~F~~~D~-~~-~g~l~~~e~~~~l~~---~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~ 126 (192)
...+..+|..+|. ++ +|+|+..||+.+++. +|..++.
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~-------------------------------------- 50 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQD-------------------------------------- 50 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCH--------------------------------------
Confidence 3567789999987 67 899999999999963 3443333
Q ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHhC
Q 039672 127 ELLRKAFKIFDEDGNGYIDASELKRVLECLG 157 (192)
Q Consensus 127 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g 157 (192)
+.+..+|+.+|.+++|.|+++||..++..+.
T Consensus 51 ~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 51 AEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 3566788888999999999999988887653
No 67
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.33 E-value=3.2e-06 Score=54.61 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=55.2
Q ss_pred HHHHHHHHHH-hcCCCCC-cccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHH
Q 039672 52 DLMLRALRAV-FGMEKNG-KIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELL 129 (192)
Q Consensus 52 ~~e~~~~F~~-~D~~~~g-~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (192)
...+..+|+. +|.+++| .|+..||+.++..-..+ .+ ... .....+
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~-------------------------~~----~~~----~~~~~~ 54 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELAS-------------------------FT----KNQ----KDPGVL 54 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhH-------------------------hh----cCC----CCHHHH
Confidence 4677889988 7788875 99999999999843111 11 000 334578
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHhC
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECLG 157 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~g 157 (192)
..+++.+|.|++|.|+++||.+++..+.
T Consensus 55 ~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 55 DRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 8899999999999999999999887653
No 68
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.28 E-value=1.4e-06 Score=44.70 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-HhC
Q 039672 54 MLRALRAVFGMEKNGKIKKERAKKVVE-KLG 83 (192)
Q Consensus 54 e~~~~F~~~D~~~~g~l~~~e~~~~l~-~~~ 83 (192)
+++.+|+.+|.|++|.|+.+||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999999 565
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.23 E-value=1.7e-06 Score=42.09 Aligned_cols=25 Identities=44% Similarity=0.848 Sum_probs=19.7
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHH
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVL 153 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l 153 (192)
++.+|+.+|.|++|.|+.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4567888888888888888888753
No 70
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.21 E-value=5.4e-06 Score=66.49 Aligned_cols=67 Identities=31% Similarity=0.493 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....++..|+.+|.+++|.|+..++.+.+..+..+. ...+-...+++.+|.|.||.|+|++|.+++
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~-~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~ 77 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPK-PNYEAAKMLFSAMDANRDGRVDYSEFKRYL 77 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCC-CchHHHHHHHHhcccCcCCcccHHHHHHHH
Confidence 5677899999999999999999999999999998872 266667889999999999999999999886
No 71
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.13 E-value=5.1e-06 Score=67.66 Aligned_cols=53 Identities=26% Similarity=0.485 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....++.+|+.+|.+++|.|+.+||.. ++.+|..+|.|+||.|+++||...+
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 5677899999999999999999999942 4678999999999999999999876
No 72
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.08 E-value=1.3e-05 Score=45.57 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 143 YIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 143 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
+++..|++.+|+.+++.+ +++-+..+++.+|.+++|.+..+||..++
T Consensus 1 kmsf~Evk~lLk~~NI~~--~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEM--DDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp EBEHHHHHHHHHHTT------HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCc--CHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 368899999999999988 99999999999999999999999998875
No 73
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.04 E-value=9.4e-05 Score=54.01 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHH
Q 039672 48 GPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDE 127 (192)
Q Consensus 48 ~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~ 127 (192)
++-+++.+..+|+.+|.+.+|+|+..|++.+|..+|.+-+. -
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTH--------------------------------------L 135 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTH--------------------------------------L 135 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhh--------------------------------------H
Confidence 34456777899999999999999999999999988665332 2
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHh--CCCCCCCHHHHHHHHHh--hcCCCCceeehHHH
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLECL--GLDKGWDMGEIEKMLKV--VDLNLDGKVDFCEF 187 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~--g~~~~~~~~~~~~~~~~--~d~~~~g~i~~~eF 187 (192)
-++.+-+..|.|.+|+||+.||.-+++.. |.-- .+..+..+.+. .|....|.-.=..|
T Consensus 136 ~lK~mikeVded~dgklSfreflLIfrkaaagEL~--~ds~~~~LAr~~eVDVskeGV~GAknF 197 (244)
T KOG0041|consen 136 GLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ--EDSGLLRLARLSEVDVSKEGVSGAKNF 197 (244)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHhccccc--cchHHHHHHHhcccchhhhhhhhHHHH
Confidence 45667788899999999999999998875 3322 45555555555 67666665444444
No 74
>PF14658 EF-hand_9: EF-hand domain
Probab=97.98 E-value=4.3e-05 Score=46.00 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=49.2
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHHHHHH
Q 039672 58 LRAVFGMEKNGKIKKERAKKVVEKLGL-IYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKAFKIF 136 (192)
Q Consensus 58 ~F~~~D~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~ 136 (192)
+|..||+++.|.|...++..+|++++. .|.+. .++...+.+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~--------------------------------------~Lq~l~~el 44 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEES--------------------------------------ELQDLINEL 44 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHH--------------------------------------HHHHHHHHh
Confidence 689999999999999999999998866 44443 555666778
Q ss_pred hccCC-CcccHHHHHHHHHH
Q 039672 137 DEDGN-GYIDASELKRVLEC 155 (192)
Q Consensus 137 D~~~~-G~I~~~el~~~l~~ 155 (192)
|+++. |.|+++.|..+|+.
T Consensus 45 DP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 45 DPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CCCCCCceEeHHHHHHHHHH
Confidence 88887 88888888888865
No 75
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.96 E-value=4.3e-05 Score=62.27 Aligned_cols=118 Identities=18% Similarity=0.136 Sum_probs=83.7
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc----------CCCCCCCch-hHHHHHhhcCCCCCCCCCCChHH
Q 039672 59 RAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD----------LPGTGLEDE-VPVEEALGLGLGELDGEGCGRDE 127 (192)
Q Consensus 59 F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~----------~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~ 127 (192)
|-.+|+|.+|.|+++++...-... ++..-+.+++ .+|.++|++ +-++.... .. ....
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e-----~k----~t~~ 351 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE-----DK----DTPA 351 (493)
T ss_pred HhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-----cC----CCcc
Confidence 556699999999999997643321 2333333333 789999999 77776544 11 4455
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHh-------CC-CCCCCHHHHHHHHHhhcCCCCceeehHHHHH
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLECL-------GL-DKGWDMGEIEKMLKVVDLNLDGKVDFCEFEL 189 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~-------g~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 189 (192)
-++=.|+..|.+++|.|+..|++.+.... |. .+ .-+.-+.+++........++|+.++|..
T Consensus 352 SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l-~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 352 SLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEAL-PFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred chhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcc-cHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 67789999999999999999998876643 32 22 1244456677777777788999999875
No 76
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.94 E-value=2e-05 Score=71.91 Aligned_cols=68 Identities=32% Similarity=0.473 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHH-----HHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMG-----EIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~-----~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+..+|+.||++.+|.++..+|+.+|+.+|+.+.+-++ +++.++...|++-+|.|+.++|+.+|
T Consensus 2250 e~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2250 EQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred HHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 445567889999999999999999999999999988744555 89999999999999999999999987
No 77
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.89 E-value=8.2e-05 Score=47.96 Aligned_cols=72 Identities=17% Similarity=0.257 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCC--CCCcccHHHHHHHHHH-hCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHH
Q 039672 52 DLMLRALRAVFGME--KNGKIKKERAKKVVEK-LGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDEL 128 (192)
Q Consensus 52 ~~e~~~~F~~~D~~--~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 128 (192)
...+..+|+.++.. .+|.|+..||+.++.. ++..++. . .....
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~------------------------------~----~~~~~ 52 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKK------------------------------E----KNQKA 52 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhcc------------------------------C----CCHHH
Confidence 35677889988744 4899999999999973 3221110 0 33567
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHhC
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLECLG 157 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~~g 157 (192)
+..+|+.+|.+++|.|+++||..++..+.
T Consensus 53 v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 53 IDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 88999999999999999999999987653
No 78
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.83 E-value=2.8e-05 Score=37.74 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHH
Q 039672 55 LRALRAVFGMEKNGKIKKERAKKVV 79 (192)
Q Consensus 55 ~~~~F~~~D~~~~g~l~~~e~~~~l 79 (192)
++.+|+.+|.|++|.|+.+||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 79
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.83 E-value=8.7e-06 Score=54.98 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELM 190 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 190 (192)
.....+..-|..+|.++||.|+..|++.+...+ .+ .+.=+..++..+|.|+||.|+..||..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-~~---~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-MP---PEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-ST---TGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-hh---hHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 456678889999999999999999999887655 22 3445788999999999999999999764
No 80
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.75 E-value=0.00033 Score=59.00 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHhccc-----------CCC---------------------
Q 039672 52 DLMLRALRAVFGMEKNGKIKKERAKKVVEK-LGLIYNEDEKSSFD-----------LPG--------------------- 98 (192)
Q Consensus 52 ~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~~-----------~~g--------------------- 98 (192)
...+.++|+..|.|.+|.++-.|+..+-+. ++.++...++..+- .+.
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~E 273 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHE 273 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcccc
Confidence 577889999999999999999999776554 46666655443332 112
Q ss_pred -------CCCCch-hHHHHHhhcCCC-----CCCCCCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHH
Q 039672 99 -------TGLEDE-VPVEEALGLGLG-----ELDGEGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMG 165 (192)
Q Consensus 99 -------~i~~~e-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~ 165 (192)
...|.+ +.+-..++.-+- ....-.....+.+..+|..||.|+||.++.+|++.+++.++... |...
T Consensus 274 ttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p-W~~~ 352 (625)
T KOG1707|consen 274 TTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP-WTSS 352 (625)
T ss_pred chhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC-CCCC
Confidence 222333 333333221000 00000112346788999999999999999999999999985432 1100
Q ss_pred HHHHHHHhhcCCCCceeehHHHHHh
Q 039672 166 EIEKMLKVVDLNLDGKVDFCEFELM 190 (192)
Q Consensus 166 ~~~~~~~~~d~~~~g~i~~~eF~~~ 190 (192)
-. ....-.+..|.++|+.|+..
T Consensus 353 ~~---~~~t~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 353 PY---KDSTVKNERGWLTLNGFLSQ 374 (625)
T ss_pred cc---cccceecccceeehhhHHHH
Confidence 00 00112236788999988764
No 81
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.68 E-value=0.00084 Score=43.26 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHH
Q 039672 53 LMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKA 132 (192)
Q Consensus 53 ~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (192)
..+..+|..+. .+.+.+++.||+.++..= +...+ ... ...+.+..+
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~E-------------------------lp~~l----~~~----~d~~~vd~i 53 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKE-------------------------FSEFL----KNQ----NDPMAVDKI 53 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHH-------------------------hHHHH----cCC----CCHHHHHHH
Confidence 56678898886 557799999999998731 11111 111 456789999
Q ss_pred HHHHhccCCCcccHHHHHHHHHHhC
Q 039672 133 FKIFDEDGNGYIDASELKRVLECLG 157 (192)
Q Consensus 133 F~~~D~~~~G~I~~~el~~~l~~~g 157 (192)
++..|.++||.|+++||-.++..+.
T Consensus 54 m~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 54 MKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 9999999999999999999987764
No 82
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0003 Score=46.80 Aligned_cols=62 Identities=27% Similarity=0.379 Sum_probs=47.1
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHh------CC-CC-CCCHHHHHHHH----HhhcCCCCceeehHHHHHhh
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECL------GL-DK-GWDMGEIEKML----KVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~------g~-~~-~~~~~~~~~~~----~~~d~~~~g~i~~~eF~~~~ 191 (192)
-.-|++.|.|++|.|+--|+..++... |. ++ ..++.|++.++ +.-|.|+||.|+|-||+...
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 357999999999999999999888764 32 21 23566665554 45588999999999998753
No 83
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.60 E-value=0.00029 Score=58.12 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCC------CCHHHHhccc---CCCCCCCch-hHHHHHhhcCCCCCCCCC
Q 039672 53 LMLRALRAVFGMEKNGKIKKERAKKVVEKLGLI------YNEDEKSSFD---LPGTGLEDE-VPVEEALGLGLGELDGEG 122 (192)
Q Consensus 53 ~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~------~~~~~~~~~~---~~g~i~~~e-~~~~~~~~~~~~~~~~~~ 122 (192)
.-...+|..||..++|.++.+++..++.+.... .+.+-+...+ ....++|.+ .+++....
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~---------- 177 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQ---------- 177 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHH----------
Confidence 455678999999999999999999999876443 2233334444 566889999 88887654
Q ss_pred CChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCc-eeehHHHH
Q 039672 123 CGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDG-KVDFCEFE 188 (192)
Q Consensus 123 ~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g-~i~~~eF~ 188 (192)
.+..+.+|+..|+.++|.||.-+++.++-....++ ....++..+-..-...++ ++++..|.
T Consensus 178 ---~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~--lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 178 ---LEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHL--LTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred ---HHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhc--CCHHHhhhhhhhcCCCCccccchHHHH
Confidence 44578999999999999999999999998765554 444455444443322222 45555443
No 84
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.54 E-value=0.00026 Score=58.65 Aligned_cols=67 Identities=30% Similarity=0.481 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCC-CCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKG-WDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+++.|...| +++|+|+..|+..++...+.+.+ ...+++++++...+.|.+|+|+|++|+..+
T Consensus 16 ~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 33457889999999 99999999999999999865431 138889999999999999999999999743
No 85
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.52 E-value=0.00045 Score=52.14 Aligned_cols=134 Identities=13% Similarity=0.024 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH-hCCCC--CHHHHhccc------CCCCCCCch--hHHHHHhhcCCCCCC--
Q 039672 53 LMLRALRAVFGMEKNGKIKKERAKKVVEK-LGLIY--NEDEKSSFD------LPGTGLEDE--VPVEEALGLGLGELD-- 119 (192)
Q Consensus 53 ~e~~~~F~~~D~~~~g~l~~~e~~~~l~~-~~~~~--~~~~~~~~~------~~g~i~~~e--~~~~~~~~~~~~~~~-- 119 (192)
..+..+|.+-|.+.+|+|+..|+++.+.. ....+ .-.+-...| ++|+|+|+| +.+++..... ..+
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghs--ekeva 178 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHS--EKEVA 178 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcc--hHHHH
Confidence 66778999999999999999999886643 21111 111112222 899999999 6666544310 000
Q ss_pred ----CCCCChHHHHHHHHHHHhccCCCcccH---------HHHHHHHHHh-CCCCCCCHHHHHHHHHhhcCCCCceeehH
Q 039672 120 ----GEGCGRDELLRKAFKIFDEDGNGYIDA---------SELKRVLECL-GLDKGWDMGEIEKMLKVVDLNLDGKVDFC 185 (192)
Q Consensus 120 ----~~~~~~~~~~~~~F~~~D~~~~G~I~~---------~el~~~l~~~-g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 185 (192)
.+.+...+.=...|..-++++.|..+. +||...|..- .... --.-+++++..+|.|+|..++-.
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgm--LrfmVkeivrdlDqdgDkqlSvp 256 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGM--LRFMVKEIVRDLDQDGDKQLSVP 256 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhh--HHHHHHHHHHHhccCCCeeecch
Confidence 000011122234455556677776665 7777776431 1111 23346888999999999999999
Q ss_pred HHHHh
Q 039672 186 EFELM 190 (192)
Q Consensus 186 eF~~~ 190 (192)
+|++.
T Consensus 257 eFisl 261 (362)
T KOG4251|consen 257 EFISL 261 (362)
T ss_pred hhhcC
Confidence 99875
No 86
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.51 E-value=0.0011 Score=57.28 Aligned_cols=128 Identities=17% Similarity=0.256 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc------CCCCCCCch-hHHHHHhhcCCCCCCCCCC
Q 039672 51 DDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD------LPGTGLEDE-VPVEEALGLGLGELDGEGC 123 (192)
Q Consensus 51 ~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~------~~g~i~~~e-~~~~~~~~~~~~~~~~~~~ 123 (192)
....+..+|...|++++|.++..+...++..++..+....+..++ .++.+.+.+ ..+.....
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~----------- 202 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT----------- 202 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc-----------
Confidence 346677889999999999999999999999998888888777777 788888888 76665544
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCC----CCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLN----LDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~~ 191 (192)
... .+...|..+-.+ .++++.++|...+...+-.-+.+.+.+++++..+... ..+.++++.|.++|
T Consensus 203 ~rp-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL 272 (746)
T KOG0169|consen 203 KRP-EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYL 272 (746)
T ss_pred cCc-hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHh
Confidence 334 888999998544 9999999999999987533344888999999887444 34669999999886
No 87
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.48 E-value=0.00015 Score=56.76 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=71.3
Q ss_pred CCCCCCCch-hHHHHHhhcCCCCCCCCCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHH-hCCCCCCCHHHHHHHHHh
Q 039672 96 LPGTGLEDE-VPVEEALGLGLGELDGEGCGRDELLRKAFKIFDEDGNGYIDASELKRVLEC-LGLDKGWDMGEIEKMLKV 173 (192)
Q Consensus 96 ~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~~ 173 (192)
.+|.+||.| +..++..+ ... .....++-+|+.|+.+.||++..++|.-+++. +|. ..-.+-.++..
T Consensus 272 ~tg~~D~re~v~~lavlc----~p~----~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv----~~l~v~~lf~~ 339 (412)
T KOG4666|consen 272 TTGNGDYRETVKTLAVLC----GPP----VTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV----EVLRVPVLFPS 339 (412)
T ss_pred CCCcccHHHHhhhheeee----CCC----CcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc----ceeeccccchh
Confidence 789999999 88888887 444 67889999999999999999999999999987 354 33346678999
Q ss_pred hcCCCCceeehHHHHHhh
Q 039672 174 VDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 174 ~d~~~~g~i~~~eF~~~~ 191 (192)
.+...+|+|+|.+|.+++
T Consensus 340 i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 340 IEQKDDPKIYASNFRKFA 357 (412)
T ss_pred hhcccCcceeHHHHHHHH
Confidence 999999999999998875
No 88
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.48 E-value=0.00042 Score=56.66 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.0
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
..+|+.+|.|++|.|+.+||..+++..
T Consensus 360 ~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 360 DAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 357999999999999999999998763
No 89
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.42 E-value=0.00074 Score=44.84 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChH
Q 039672 47 AGPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRD 126 (192)
Q Consensus 47 ~~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~ 126 (192)
.++.+...+..+|...|+ ++|.|+..+.+.++...+ -..
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~----------------------------------------L~~ 42 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG----------------------------------------LPR 42 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT----------------------------------------SSH
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC----------------------------------------CCH
Confidence 356677888999998875 589999999998887431 344
Q ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 127 ELLRKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 127 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
+.+..+|...|.+++|+++.+||.-+++-+
T Consensus 43 ~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 43 DVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 688899999999999999999999887643
No 90
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.39 E-value=0.00074 Score=42.85 Aligned_cols=63 Identities=13% Similarity=0.305 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCC----CCceeehHHHHHhh
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLN----LDGKVDFCEFELMM 191 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~~ 191 (192)
.+..+|..|-. +.+.+|.++|...|..-.....++.+++..++..+..+ ..+.+++++|..+|
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 36789999955 89999999999999876543233899999999998655 46889999999987
No 91
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.00066 Score=58.75 Aligned_cols=143 Identities=17% Similarity=0.234 Sum_probs=97.3
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-----CCCCC----HHHHhccc----------CCCCCCCch-
Q 039672 45 ETAGPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKL-----GLIYN----EDEKSSFD----------LPGTGLEDE- 104 (192)
Q Consensus 45 ~~~~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~-----~~~~~----~~~~~~~~----------~~g~i~~~e- 104 (192)
.-.+.+...-+..+|.+-|.|+||+++..||.-+++.. |+.++ ...+.... +-|.|++.+
T Consensus 41 flqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qp 120 (1118)
T KOG1029|consen 41 FLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQP 120 (1118)
T ss_pred HHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCC
Confidence 33455667788999999999999999999997776642 44432 22222211 345555555
Q ss_pred hHHHHHhhc-----------------CCC----CC-----------------CC--------------CCCChHHHHHHH
Q 039672 105 VPVEEALGL-----------------GLG----EL-----------------DG--------------EGCGRDELLRKA 132 (192)
Q Consensus 105 ~~~~~~~~~-----------------~~~----~~-----------------~~--------------~~~~~~~~~~~~ 132 (192)
+.-...... .+| .+ .+ -+....-+++..
T Consensus 121 L~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~Ql 200 (1118)
T KOG1029|consen 121 LPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQL 200 (1118)
T ss_pred CCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCcchhhcCccchhhhhhhhccccchhhhHHHHH
Confidence 332211110 000 00 00 011234578899
Q ss_pred HHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 133 FKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 133 F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
|...|+..+|++|-..-+.+|...+. +...+..++...|.|+||+++-+||+-+|
T Consensus 201 FNa~DktrsG~Lsg~qaR~aL~qS~L----pq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 201 FNALDKTRSGYLSGQQARSALGQSGL----PQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hhhcccccccccccHHHHHHHHhcCC----chhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 99999999999999999999987766 56778889999999999999999998665
No 92
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.32 E-value=9.7e-05 Score=55.65 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHh-CCCCCCCHHHHHHHHHhhcCCCCceeehHHHH
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECL-GLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFE 188 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 188 (192)
...+.+..+|.+.|.+.+|+|+..|+++++..- ..+++-..++-+..++..|.|+||.|++++|.
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 345688999999999999999999999988753 22221134455667888899999999999985
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.24 E-value=0.00055 Score=33.21 Aligned_cols=27 Identities=48% Similarity=0.941 Sum_probs=23.1
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHH
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLEC 155 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~ 155 (192)
++.+|+.+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999888864
No 94
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.21 E-value=0.0049 Score=44.27 Aligned_cols=137 Identities=18% Similarity=0.112 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCC------------ch-hHHHHHhhcCCC--CC
Q 039672 54 MLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLE------------DE-VPVEEALGLGLG--EL 118 (192)
Q Consensus 54 e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~------------~e-~~~~~~~~~~~~--~~ 118 (192)
.+++=...||.|++|.|.+-|-...++.+|+++.-.-+-.++-++.+++ .= +.-+..-..|++ .-
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 4555556789999999999999999999999876554444330000000 00 111111111111 11
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhC---CCCCCCHHHHHHHHHh-hcCCCCceeehHHHHHh
Q 039672 119 DGEGCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLG---LDKGWDMGEIEKMLKV-VDLNLDGKVDFCEFELM 190 (192)
Q Consensus 119 ~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g---~~~~~~~~~~~~~~~~-~d~~~~g~i~~~eF~~~ 190 (192)
.....-..+++.++|.++++.+.+.+|..|+.++++.-- -+.++....+++.+.. .-.+++|.+..+.-..+
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGV 163 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhh
Confidence 112224568999999999999999999999999998732 2223333444443322 23467899988875543
No 95
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.20 E-value=0.0022 Score=52.42 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHH
Q 039672 53 LMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKA 132 (192)
Q Consensus 53 ~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (192)
..+..+|+.+|.|++|.|+.+||+.+.+.++ ..+ ... -..+.+.+.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~--------------------------sh~----~~~----i~~~~i~~l 592 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLS--------------------------SHM----NGA----ISDDEILEL 592 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHH--------------------------hhc----CCC----cCHHHHHHH
Confidence 4556677777777777777777777666431 111 111 345567777
Q ss_pred HHHHhccCCCcccHHHHHHHHHHh
Q 039672 133 FKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 133 F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
-+.+|.++||.|+..||..+++-.
T Consensus 593 a~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 593 ARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHhhccCCCCcccHHHHHHHHhhh
Confidence 788999999999999999998754
No 96
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.97 E-value=0.0012 Score=31.98 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 039672 54 MLRALRAVFGMEKNGKIKKERAKKVVEK 81 (192)
Q Consensus 54 e~~~~F~~~D~~~~g~l~~~e~~~~l~~ 81 (192)
+++.+|..+|.+++|.|+..+|..++..
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 4678999999999999999999998874
No 97
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.96 E-value=0.0018 Score=36.85 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
-....+..+|+.+|++++|.+..+||...++.+
T Consensus 18 ~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 18 MDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp --HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 455678889999999999999999999988764
No 98
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.69 E-value=0.025 Score=39.48 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=60.7
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCH----HHHhccc---CCCCCCCch-hHHHHHhhcCCCCCCCCCCChHHH
Q 039672 57 ALRAVFGMEKNGKIKKERAKKVVEKLGLIYNE----DEKSSFD---LPGTGLEDE-VPVEEALGLGLGELDGEGCGRDEL 128 (192)
Q Consensus 57 ~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~----~~~~~~~---~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~~ 128 (192)
++-..|..|+.|-++.++|..++..+....+. .-..++. +++.|.-++ ...+...- ..+ ...+.
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT----r~e----Ls~eE 146 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT----RDE----LSDEE 146 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh----hcc----CCHHH
Confidence 34456678999999999999988765332222 2222333 777777777 55555544 222 23333
Q ss_pred ----HHHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 129 ----LRKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 129 ----~~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
..++..--|.||+|+|+..||..++...
T Consensus 147 v~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 147 VELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 4455666699999999999999998654
No 99
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.55 E-value=0.0015 Score=44.05 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHH
Q 039672 49 PVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDEL 128 (192)
Q Consensus 49 ~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 128 (192)
......+.=.|..+|.|++|.|+..|+..+...+ . .....
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-----------------------------~-----------~~e~C 89 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-----------------------------M-----------PPEHC 89 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-----------------------------S-----------TTGGG
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-----------------------------h-----------hhHHH
Confidence 3445666667999999999999999997654422 0 33446
Q ss_pred HHHHHHHHhccCCCcccHHHHHH
Q 039672 129 LRKAFKIFDEDGNGYIDASELKR 151 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~ 151 (192)
++..|+.+|.|+||.||..|...
T Consensus 90 ~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 90 ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHcc
Confidence 78899999999999999999754
No 100
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=96.39 E-value=0.0021 Score=39.18 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCC-------CceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNL-------DGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~-------~g~i~~~eF~~~~ 191 (192)
...+.+..+|+.+ .++.++||.+||++.| ++++++.++..+..-. -|.++|..|+..+
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l---------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL---------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS----------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc---------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 4457899999999 8889999999999997 4455566666653322 2679999998754
No 101
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.39 E-value=0.043 Score=45.29 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=32.2
Q ss_pred HHHHHHHH----HHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHH
Q 039672 127 ELLRKAFK----IFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEF 187 (192)
Q Consensus 127 ~~~~~~F~----~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 187 (192)
..+..+|. .+-...+|.+++++|...+-...-+- ++.-++..++-.|.+++|-++.++.
T Consensus 311 ~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~--t~~SleYwFrclDld~~G~Lt~~el 373 (493)
T KOG2562|consen 311 RIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD--TPASLEYWFRCLDLDGDGILTLNEL 373 (493)
T ss_pred HHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC--CccchhhheeeeeccCCCcccHHHH
Confidence 34555555 22344455666666666555544444 4555566666666666666665543
No 102
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.24 E-value=0.061 Score=45.14 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCC---CHHHHhccc------CCCCCCCch-hHHHHHhh
Q 039672 48 GPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIY---NEDEKSSFD------LPGTGLEDE-VPVEEALG 112 (192)
Q Consensus 48 ~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~---~~~~~~~~~------~~g~i~~~e-~~~~~~~~ 112 (192)
+..+..+++..|...| +++|+++..++..++...+... ..++++.++ .+|.|+|++ +..+....
T Consensus 14 tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 14 TQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred cHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 4556677888899998 9999999999999999876654 345555555 567777777 66554433
No 103
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.06 E-value=0.031 Score=44.18 Aligned_cols=95 Identities=12% Similarity=-0.039 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc-------CCCCCCCch-hHHHHHhhcCCCCCCCCCCC
Q 039672 53 LMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD-------LPGTGLEDE-VPVEEALGLGLGELDGEGCG 124 (192)
Q Consensus 53 ~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~-------~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~ 124 (192)
..++..|..||.+++|-++..+-...+.-+..++...++-++. .+|.+.-.+ ..+++..+. .
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg----------v 328 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG----------V 328 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC----------c
Confidence 5678899999999999999888877776554444333333332 677777766 555554441 3
Q ss_pred hHHHHHHHHHHHhccCCCcccHHHHHHHHHHhC
Q 039672 125 RDELLRKAFKIFDEDGNGYIDASELKRVLECLG 157 (192)
Q Consensus 125 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g 157 (192)
..-.+--.|..+++..+|+|+.++|++.....+
T Consensus 329 ~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 329 EVLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ceeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 344567789999999999999999999987653
No 104
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.045 Score=45.59 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
...+.+..-|+.+..|-.|.|+-.--+.+|.+..+ +-.|+..|+...|.|.||.+++.||+.++
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSkl----pi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKL----PIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhccC----chHHHHHHHhhcccCccccccHHHHHhhH
Confidence 34567888999999999999999999999988766 45788999999999999999999999876
No 105
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.95 E-value=0.059 Score=45.73 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 126 DELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 126 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
....+.-|..+|.|+.|+++.+++..+|+..+.+. +++.+.+++..+|.+.+|.+...+|.+++
T Consensus 592 ~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~--d~~~~~~~l~ea~~~~~g~v~l~e~~q~~ 655 (680)
T KOG0042|consen 592 FLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGW--DEDRLHEELQEADENLNGFVELREFLQLM 655 (680)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhhcceeeHHHHHHHH
Confidence 34566889999999999999999999999988766 99999999999999999999999999876
No 106
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.77 E-value=0.044 Score=50.93 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=48.3
Q ss_pred HHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHh
Q 039672 133 FKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELM 190 (192)
Q Consensus 133 F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 190 (192)
|+-||.||.|.|+..+|..++...... +..+++-++.-+..|.+.+++|++|+.-
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k~y---tqse~dfllscae~dend~~~y~dfv~r 4117 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHKHY---TQSEIDFLLSCAEADENDMFDYEDFVDR 4117 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccccc---hhHHHHHHHHhhccCccccccHHHHHHH
Confidence 677799999999999999999775543 7889999999999999999999999864
No 107
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.71 E-value=0.031 Score=44.17 Aligned_cols=60 Identities=27% Similarity=0.286 Sum_probs=47.3
Q ss_pred HHHHHHHHHhccCCCcccHHHHHH---HHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKR---VLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~---~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
-+..-|..+|.++++.|...|.+. ++..... ...=...+++.+|.|+|.+|+++|+..++
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~----~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK----PRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhcc----HHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 566789999999999999999554 4433322 23345778999999999999999999876
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.49 E-value=0.088 Score=47.08 Aligned_cols=96 Identities=21% Similarity=0.036 Sum_probs=75.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCH-H----HHhccc--C----CCCCCCch-hHHHHHhhcC
Q 039672 47 AGPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNE-D----EKSSFD--L----PGTGLEDE-VPVEEALGLG 114 (192)
Q Consensus 47 ~~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~-~----~~~~~~--~----~g~i~~~e-~~~~~~~~~~ 114 (192)
.+.....++++.|+.+++...|.++++++..+|-.+|.+.-. . ++..+. . -|+++|.+ ...+.+..
T Consensus 741 ~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~-- 818 (890)
T KOG0035|consen 741 TSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY-- 818 (890)
T ss_pred hhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh--
Confidence 344556899999999999999999999999999999998764 2 222333 2 38899999 88888776
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhccCCCcccHHHHHH
Q 039672 115 LGELDGEGCGRDELLRKAFKIFDEDGNGYIDASELKR 151 (192)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~ 151 (192)
... .....+..+|..+-++.. +|..+||..
T Consensus 819 --e~l----~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 819 --EDL----DTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred --hhh----cHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 444 677788889999966665 899999888
No 109
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.43 E-value=0.24 Score=31.12 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHHH
Q 039672 54 MLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKAF 133 (192)
Q Consensus 54 e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~F 133 (192)
|+..+|..+-. +.+.|+.++|..+|+.-.... ....+.+..++
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~------------------------------------~~~~~~~~~li 43 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEP------------------------------------RLTDEQAKELI 43 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-T------------------------------------TSSHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccc------------------------------------cCcHHHHHHHH
Confidence 57889999944 799999999999998431110 02344555666
Q ss_pred HHHhcc----CCCcccHHHHHHHHHHh
Q 039672 134 KIFDED----GNGYIDASELKRVLECL 156 (192)
Q Consensus 134 ~~~D~~----~~G~I~~~el~~~l~~~ 156 (192)
..|..+ ..+.++.++|...|..-
T Consensus 44 ~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 44 EKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHccchhhcccCCcCHHHHHHHHCCC
Confidence 666443 47999999999999664
No 110
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.12 Score=34.72 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=47.8
Q ss_pred CCHHHHH-HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHH
Q 039672 50 VDDLMLR-ALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDEL 128 (192)
Q Consensus 50 ~~~~e~~-~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 128 (192)
.++.+++ ..|+..|-|++|.|+--|+..++...--.... +...+-+.. .. .....
T Consensus 63 mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~-------ghep~Pl~s-------------E~----Ele~~ 118 (144)
T KOG4065|consen 63 MTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDS-------GHEPVPLSS-------------EA----ELERL 118 (144)
T ss_pred CCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhc-------CCCCCCCCC-------------HH----HHHHH
Confidence 3445554 56788899999999999998888765110000 000000000 00 12234
Q ss_pred HHHHHHHHhccCCCcccHHHHHHH
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRV 152 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~ 152 (192)
+..+.+--|.++||+|++-||...
T Consensus 119 iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 119 IDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHhcccccCCCceeeHHHHHhh
Confidence 556677778999999999998754
No 111
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.11 E-value=0.43 Score=34.01 Aligned_cols=63 Identities=19% Similarity=0.347 Sum_probs=46.3
Q ss_pred HHHHHHHH---hccCCCcccHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 129 LRKAFKIF---DEDGNGYIDASELKRVLECLGL-DKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 129 ~~~~F~~~---D~~~~G~I~~~el~~~l~~~g~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
|+.+|..| -..+...++-..|..+++.+++ .-.++..+++-++..+-..+..+|+|++|+.+|
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL 67 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEAL 67 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHH
Confidence 34566666 3566678999999999999864 111389999999999766666789999999886
No 112
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.11 E-value=0.073 Score=42.40 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.-...+-..|..+|.+.||.++..|+..+-..- .+.=++.+|..+|...||.|+-.||+.+.
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk------nE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK------NEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhccC------chhHHHHHHhhhcccccCccccchhhhhh
Confidence 345678899999999999999999998875322 34447889999999999999999998654
No 113
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=92.60 E-value=1.7 Score=39.27 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCC--------CCCHHHHHHHHHhhcCCC----CceeehHHHHHhhC
Q 039672 127 ELLRKAFKIFDEDGNGYIDASELKRVLECLGLDK--------GWDMGEIEKMLKVVDLNL----DGKVDFCEFELMMG 192 (192)
Q Consensus 127 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~--------~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~~~ 192 (192)
..+..+|..+-.+..-++|.++|..+|..-.... ...+..+..++..+..|. .|+++-+.|+.++.
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 3789999999988889999999999998652211 136788899999997665 68899999998763
No 114
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.07 E-value=0.29 Score=41.01 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
....++..+|.+.|.|.||.++..||..+|.-.
T Consensus 262 lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 262 LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 556688999999999999999999999998754
No 115
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=91.96 E-value=0.54 Score=42.32 Aligned_cols=66 Identities=24% Similarity=0.246 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCH-----HHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDM-----GEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....++..|..+|+...|.++++++.+++..+|... .+ .++..++...|.+.-|.|+|.+|...|
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~--e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNT--EEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCccc--chhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 3456899999999999999999999999999999987 43 233445555566667999999998876
No 116
>PLN02952 phosphoinositide phospholipase C
Probab=91.79 E-value=1.8 Score=37.78 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc-------CCCCceeehHHHHHhh
Q 039672 125 RDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVD-------LNLDGKVDFCEFELMM 191 (192)
Q Consensus 125 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d-------~~~~g~i~~~eF~~~~ 191 (192)
....+..+|..+-. +.+.++.++|...|....-....+.+++..++..+- ....+.++++.|..+|
T Consensus 36 ~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l 108 (599)
T PLN02952 36 PPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFL 108 (599)
T ss_pred ChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHH
Confidence 45688999999954 447899999999999865322237777777755431 1123458999999886
No 117
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.57 E-value=1.1 Score=28.81 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHh-------CCCC--CCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 126 DELLRKAFKIFDEDGNGYIDASELKRVLECL-------GLDK--GWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 126 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-------g~~~--~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.++++-+|..+ .|++|.++...|...|..+ |... +..+.-+..++.... ....|+-++|+..|
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl 73 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWL 73 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHH
Confidence 46889999999 7899999999999888865 2211 114555666666652 44569999999876
No 118
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.46 E-value=2.2 Score=30.94 Aligned_cols=75 Identities=7% Similarity=0.067 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChH
Q 039672 47 AGPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRD 126 (192)
Q Consensus 47 ~~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~ 126 (192)
..++.+..++++|.+++..+.+.|+..|+..+++.- ..+.+ + .--. ...
T Consensus 90 eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n-r~~~D-------------~--~GW~---------------a~~ 138 (174)
T PF05042_consen 90 EGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN-RNAND-------------P--FGWF---------------AAF 138 (174)
T ss_pred CCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc-cccCC-------------c--chhh---------------hhh
Confidence 456677999999999998888899999999888731 11111 1 1111 111
Q ss_pred HHHHHHHHHHhccCCCcccHHHHHHHH
Q 039672 127 ELLRKAFKIFDEDGNGYIDASELKRVL 153 (192)
Q Consensus 127 ~~~~~~F~~~D~~~~G~I~~~el~~~l 153 (192)
-++...+.+. .+.+|.+..++++.+.
T Consensus 139 ~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 139 FEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred hHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 2444555555 6778999999998875
No 119
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.30 E-value=0.19 Score=39.84 Aligned_cols=63 Identities=19% Similarity=0.119 Sum_probs=45.6
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHHHHHH
Q 039672 57 ALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKAFKIF 136 (192)
Q Consensus 57 ~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~ 136 (192)
=.|..+|+|.++.|++.|++.+-+.+ ..+- ......+..|+.+
T Consensus 337 w~F~qLdkN~nn~i~rrEwKpFK~~l--------------------------~k~s-----------~~rkC~rk~~~yC 379 (421)
T KOG4578|consen 337 WYFNQLDKNSNNDIERREWKPFKRVL--------------------------LKKS-----------KPRKCSRKFFKYC 379 (421)
T ss_pred eeeeeecccccCccchhhcchHHHHH--------------------------Hhhc-----------cHHHHhhhcchhc
Confidence 34677788888888888776543311 1111 4455778999999
Q ss_pred hccCCCcccHHHHHHHHHHh
Q 039672 137 DEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 137 D~~~~G~I~~~el~~~l~~~ 156 (192)
|.++|.+|++.|+...|...
T Consensus 380 DlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 380 DLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred ccCCCceecHHHHhhhhccc
Confidence 99999999999999988543
No 120
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.95 E-value=0.3 Score=38.51 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=43.7
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHh-----CCCCCCCHHHH-----------HHHHHhhcCCCCceeehHHHHHh
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECL-----GLDKGWDMGEI-----------EKMLKVVDLNLDGKVDFCEFELM 190 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~-----g~~~~~~~~~~-----------~~~~~~~d~~~~g~i~~~eF~~~ 190 (192)
+..|.+.|.++||.++-.|+..++..- .... .+++. +-+++..|.|.|..|+.++|++.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkN--eeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKN--EEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 356888899999999999999987652 1111 22222 22677789999999999999864
No 121
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=90.57 E-value=0.68 Score=37.12 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCC
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLD 159 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~ 159 (192)
..+..++..|..+|...||.|+..|.-..|...+.+
T Consensus 279 knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~p 314 (434)
T KOG3555|consen 279 KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDPP 314 (434)
T ss_pred CchhHHHHHHhhhcccccCccccchhhhhhccCCCc
Confidence 556789999999999999999999999998887743
No 122
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=90.57 E-value=0.66 Score=40.84 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+..+|+..|++++|.++..+...++..+...+ ....+..+++..+...++++..++|.++.
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l--~~~~~~~~f~e~~~~~~~k~~~~~~~~~~ 198 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL--SESKARRLFKESDNSQTGKLEEEEFVKFR 198 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhh--hHHHHHHHHHHHHhhccceehHHHHHHHH
Confidence 4566788999999999999999999999999998877 88888889999988889999999888753
No 123
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.12 E-value=1 Score=39.96 Aligned_cols=67 Identities=19% Similarity=0.345 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHH
Q 039672 50 VDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELL 129 (192)
Q Consensus 50 ~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (192)
-+...++.+|+.+|+..+|+|+-.+-+.+|-..+ .....+
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~----------------------------------------Lpq~~L 231 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG----------------------------------------LPQNQL 231 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhcC----------------------------------------CchhhH
Confidence 3456778999999999999999999988886332 233466
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
..++.+-|.|+||.++.+||.-++..+
T Consensus 232 A~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 232 AHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhheeeeccCCCCcccHHHHHHHHHHH
Confidence 778888899999999999998776543
No 124
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=87.65 E-value=1.4 Score=34.89 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=22.8
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHhC
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECLG 157 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~g 157 (192)
..+.+.+|.+.|..||.+||...-.+-.
T Consensus 299 EHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 299 EHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred HHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 4677889999999999999988765543
No 125
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=86.84 E-value=0.7 Score=32.27 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=29.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCC-------CceeehHHHHHhhC
Q 039672 140 GNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNL-------DGKVDFCEFELMMG 192 (192)
Q Consensus 140 ~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~-------~g~i~~~eF~~~~~ 192 (192)
.-+.||.+||.+.=+-... +...+.+++..+..++ ++.|+|+.|..+|+
T Consensus 4 ~~~~lsp~eF~qLq~y~ey----s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSEY----STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp --S-S-HHHHHHHHHHHHH--------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred ceeccCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 3478899999887665543 4556788888875443 56899999998873
No 126
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.10 E-value=1 Score=36.54 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=44.0
Q ss_pred CCChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHH-HHHHHhhcCCCCceeehHHH
Q 039672 122 GCGRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEI-EKMLKVVDLNLDGKVDFCEF 187 (192)
Q Consensus 122 ~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~-~~~~~~~d~~~~g~i~~~eF 187 (192)
++...+.++.+|+.+|..++|+|+.+-++.++..+...+ ++... .-+-...|...-|.|-.+.|
T Consensus 304 ~~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~v--se~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 304 PENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLV--SEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred CCCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccc--cCHHHHHHhcCccChhhcceEEeccc
Confidence 335578999999999999999999999999999887555 44332 22222334444444444444
No 127
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=83.81 E-value=1.5 Score=38.05 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHH
Q 039672 126 DELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCE 186 (192)
Q Consensus 126 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 186 (192)
...+..+|+.+|..++|.|++.++...|..+.... -.+.+.-+++.+|..++ ..+.++
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~--~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGD--ALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhh--HHHHHHHHHhhccCCcc-cccccc
Confidence 45678899999999999999999999998876544 45667778888888877 655543
No 128
>PLN02222 phosphoinositide phospholipase C 2
Probab=82.51 E-value=6.1 Score=34.40 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcC-CCCceeehHHHHHhhC
Q 039672 125 RDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDL-NLDGKVDFCEFELMMG 192 (192)
Q Consensus 125 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~~~ 192 (192)
....+..+|..+-. ++.++.++|...|....-....+.+.+..++..+.. ...+.++++.|..+|.
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 34589999999953 579999999999998653222367788888887632 2355699999998873
No 129
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.33 E-value=0.74 Score=41.84 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 125 RDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 125 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
....+..+|...|.+.+|+|+..+....+...|. +...+..++...|..+.|++++.+|.-.+
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl----~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGL----SKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred HHHHHHHHHHhccccCCCcccccccccccccCCC----ChhhhhhhhhhcchhccCcccccccchhh
Confidence 3556778999999999999999999999988655 67778999999999999999999886543
No 130
>PLN02228 Phosphoinositide phospholipase C
Probab=80.25 E-value=11 Score=32.78 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCC----CCceeehHHHHHhhC
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLN----LDGKVDFCEFELMMG 192 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~~~ 192 (192)
.....+..+|..+-. ++.++.++|...|....-....+.+.+..++..+... ..|.++.+.|..+|.
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 456789999999953 3689999999999886432212567788888887543 346799999998873
No 131
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=76.48 E-value=20 Score=23.91 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=39.8
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVD 175 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d 175 (192)
+..+|-+.+.-++-..+..+++.+|...|..+ +++.++.++....
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~--d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEI--DDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCccc--CHHHHHHHHHHhc
Confidence 45678888899999999999999999999998 9999999988875
No 132
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=75.86 E-value=3.8 Score=35.70 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHH
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASEL 149 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el 149 (192)
...+++.-.|+++|..++ ..+.+|.
T Consensus 588 ~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 588 DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred hHHHHHHHHHhhccCCcc-ccccccc
Confidence 556677888888888888 8888777
No 133
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=75.32 E-value=2.7 Score=27.41 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=26.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHh
Q 039672 141 NGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELM 190 (192)
Q Consensus 141 ~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 190 (192)
||.++..|...+-..+....++++.+...++..+........++.+|.+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 62 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSL 62 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 56777776655544332111126666666666665544444566665543
No 134
>PLN02230 phosphoinositide phospholipase C 4
Probab=75.10 E-value=19 Score=31.60 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhC-CCCCCCHHHHHHHHHhhc-------CCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLG-LDKGWDMGEIEKMLKVVD-------LNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~~~d-------~~~~g~i~~~eF~~~~ 191 (192)
.....++.+|..|- .+.+.++.++|...|..-+ .....+.+++..++..+- .-+.+.++.+.|..+|
T Consensus 26 ~p~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 26 GPVADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred CCcHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 34568999999995 4448999999999999865 321125666777775431 1234569999999876
No 135
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.77 E-value=13 Score=26.08 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=41.7
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.--.|+..+.| |.++..|....-.-+....+++.++++.++.....-+...++|..|...|
T Consensus 32 ~~Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l 92 (148)
T COG4103 32 AALLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVL 92 (148)
T ss_pred HHHHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33677777555 67777775554443332233389999999988877777788888887765
No 136
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=73.20 E-value=5.4 Score=34.51 Aligned_cols=61 Identities=10% Similarity=0.002 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCH----HHHhcccCCCCCCCch-hHHHHHhh
Q 039672 52 DLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNE----DEKSSFDLPGTGLEDE-VPVEEALG 112 (192)
Q Consensus 52 ~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~g~i~~~e-~~~~~~~~ 112 (192)
..-+..+|..||.|++|-+++.|+..+...++..+.. .+.......|.+++.- +..|...-
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~T 379 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMT 379 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHh
Confidence 4667899999999999999999999999987655522 1111111678888887 77776543
No 137
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=71.57 E-value=1.7 Score=32.15 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=38.1
Q ss_pred CCCCCCCch-hHHHHHhhcCCCCCCCCCCChHHHHHHHHHHHhccCCCcccHHHHHHHH
Q 039672 96 LPGTGLEDE-VPVEEALGLGLGELDGEGCGRDELLRKAFKIFDEDGNGYIDASELKRVL 153 (192)
Q Consensus 96 ~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l 153 (192)
-+|.++-.| ..+-.... +.+......|...|.|+||+|+..|....|
T Consensus 201 ~d~~~sh~el~pl~ap~i-----------pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLI-----------PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccccCCcc-----------cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 577788888 77666665 677788899999999999999999877665
No 138
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=68.91 E-value=16 Score=22.10 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhcCC
Q 039672 147 SELKRVLECLGLDKGWDMGEIEKMLKVVDLN 177 (192)
Q Consensus 147 ~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~ 177 (192)
+++..+++..|..+ |..++..+++.-+..
T Consensus 17 ~~m~~if~l~~~~v--s~~el~a~lrke~~~ 45 (68)
T PF07308_consen 17 DDMIEIFALAGFEV--SKAELSAWLRKEDEK 45 (68)
T ss_pred HHHHHHHHHcCCcc--CHHHHHHHHCCCCCc
Confidence 44666666666666 666666666654433
No 139
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=68.83 E-value=3.4 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHH
Q 039672 127 ELLRKAFKIFDEDGNGYIDASELKRVLEC 155 (192)
Q Consensus 127 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 155 (192)
..+..+...|+.-..+.|+++||.+-++.
T Consensus 25 ~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 25 SKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34445555555555566666666555554
No 140
>PLN02223 phosphoinositide phospholipase C
Probab=66.88 E-value=31 Score=29.82 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHH---HHhC--CCCCCCHHHHHHHHHhhcCC--------CCceeehHHHHHh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVL---ECLG--LDKGWDMGEIEKMLKVVDLN--------LDGKVDFCEFELM 190 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l---~~~g--~~~~~~~~~~~~~~~~~d~~--------~~g~i~~~eF~~~ 190 (192)
...+.++.+|..| .++.|.++.+.+.+.+ ...+ ... +.++.+.++..+-.. ..+.++.+.|..+
T Consensus 13 ~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~ 89 (537)
T PLN02223 13 NQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGA--GLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEF 89 (537)
T ss_pred CCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccC--CHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHH
Confidence 4567899999999 4788999999999999 4432 233 677777777665322 1256999999988
Q ss_pred h
Q 039672 191 M 191 (192)
Q Consensus 191 ~ 191 (192)
|
T Consensus 90 L 90 (537)
T PLN02223 90 L 90 (537)
T ss_pred h
Confidence 6
No 141
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=66.31 E-value=5.3 Score=33.68 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc----------CCCCCCCch-hHHHHHhhcCCCCCCC
Q 039672 52 DLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD----------LPGTGLEDE-VPVEEALGLGLGELDG 120 (192)
Q Consensus 52 ~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~----------~~g~i~~~e-~~~~~~~~~~~~~~~~ 120 (192)
...+..+| .+-....+.-+.+||...++.....+... +..++ ..+...++. ++++....
T Consensus 288 ~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~~~-~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL~~-------- 357 (445)
T PF13608_consen 288 EDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELLEF-AEEMIEEEEVEHQAKTASEKNLEKIIAFVALLM-------- 357 (445)
T ss_pred HHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHHHH-HHHHhCCCcEEecCCChHHHHHHHHHHHHHHHH--------
Confidence 35666677 66555577788999999888554333221 11111 345555666 55554433
Q ss_pred CCCChHHHHHHHHHHHhccCCCccc--HHHHHHHHHHhCCCC
Q 039672 121 EGCGRDELLRKAFKIFDEDGNGYID--ASELKRVLECLGLDK 160 (192)
Q Consensus 121 ~~~~~~~~~~~~F~~~D~~~~G~I~--~~el~~~l~~~g~~~ 160 (192)
-.||.+++..|- ..-|+.++..+|..+
T Consensus 358 -------------M~FD~ERSD~VyKiLnKlK~v~st~~~~V 386 (445)
T PF13608_consen 358 -------------MMFDAERSDCVYKILNKLKGVFSTMGQDV 386 (445)
T ss_pred -------------HHhCchhhHHHHHHHHHHHHHHhccCCCc
Confidence 334555544432 345777777776543
No 142
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=64.16 E-value=22 Score=19.44 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHh--ccCCCcccHHHHHHHHHH
Q 039672 126 DELLRKAFKIFD--EDGNGYIDASELKRVLEC 155 (192)
Q Consensus 126 ~~~~~~~F~~~D--~~~~G~I~~~el~~~l~~ 155 (192)
...+-.+|..|- ..+..+++..||+..+..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 446778899995 234679999999999976
No 143
>PLN02952 phosphoinositide phospholipase C
Probab=63.73 E-value=18 Score=31.70 Aligned_cols=51 Identities=4% Similarity=0.076 Sum_probs=38.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 140 GNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 140 ~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
+.|.+++++|..+.+.+.........++..++..+-.++ +.++.++|..+|
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL 63 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFL 63 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHH
Confidence 468999999988877775322125778999999996444 579999999886
No 144
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=62.95 E-value=43 Score=22.51 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVD 175 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d 175 (192)
++-.+|-+...-++..+|.++++.+|+..|..+ .+..+..+++...
T Consensus 4 kyvaAYlL~~lgG~~~pTaddI~kIL~AaGveV--d~~~~~l~~~~L~ 49 (112)
T PTZ00373 4 KYVAAYLMCVLGGNENPTKKEVKNVLSAVNADV--EDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCc--cHHHHHHHHHHHc
Confidence 344567777778888999999999999999988 7777777777764
No 145
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=62.86 E-value=11 Score=22.89 Aligned_cols=29 Identities=3% Similarity=0.035 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 039672 51 DDLMLRALRAVFGMEKNGKIKKERAKKVVE 80 (192)
Q Consensus 51 ~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~ 80 (192)
+...+...|+.+ .++.++|+..+|+..|.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 457889999999 77899999999988754
No 146
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=62.42 E-value=13 Score=16.94 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=9.9
Q ss_pred hccCCCcccHHHHHHH
Q 039672 137 DEDGNGYIDASELKRV 152 (192)
Q Consensus 137 D~~~~G~I~~~el~~~ 152 (192)
|.++||.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5677777777666543
No 147
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.29 E-value=22 Score=31.57 Aligned_cols=64 Identities=16% Similarity=0.338 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHh---CCCCCC----CHHHHHHHHHhhcCCCCceeehHHHHH
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECL---GLDKGW----DMGEIEKMLKVVDLNLDGKVDFCEFEL 189 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~---g~~~~~----~~~~~~~~~~~~d~~~~g~i~~~eF~~ 189 (192)
..++.++..|.++|. ++|.++.+++..++... +. +.. +.+....++...|.+..|.+.++++.-
T Consensus 15 ~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 85 (646)
T KOG0039|consen 15 SYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW-LSLIKKQTEEYAALIMEELDPDHKGYITNEDLEI 85 (646)
T ss_pred ChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh-hhhhhhhhhHHHHHhhhhccccccceeeecchhH
Confidence 778899999999998 99999999999988764 11 111 334445566777777777666655543
No 148
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=60.90 E-value=13 Score=25.58 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHhcCCC--CCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCc--hhHHHHHhhcCCCCCCCCC
Q 039672 47 AGPVDDLMLRALRAVFGMEK--NGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLED--EVPVEEALGLGLGELDGEG 122 (192)
Q Consensus 47 ~~~~~~~e~~~~F~~~D~~~--~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~--e~~~~~~~~~~~~~~~~~~ 122 (192)
..-.+...+.++|..+..+. +..++..++..+|..+-.....+ .....+.. .+..
T Consensus 35 l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~------~p~~~~i~~~~v~~--------------- 93 (127)
T PF09068_consen 35 LDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKR------LPTLHQIPSRPVDL--------------- 93 (127)
T ss_dssp GGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHH------STTS--HH-----H---------------
T ss_pred heeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCCCchhHHH---------------
Confidence 34456677788888775332 56699999998888652000000 00000000 0000
Q ss_pred CChHHHHHHHHHHHhccCCCcccHHHHHHHHHH
Q 039672 123 CGRDELLRKAFKIFDEDGNGYIDASELKRVLEC 155 (192)
Q Consensus 123 ~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 155 (192)
...-.+......||.+++|.|+.-.++..|..
T Consensus 94 -a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 94 -AVDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp -HHHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 11224567889999999999999999988754
No 149
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=60.79 E-value=57 Score=23.12 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=19.6
Q ss_pred HHHHHHh---cCCCCCcccHHHHHHHHHHhCC
Q 039672 56 RALRAVF---GMEKNGKIKKERAKKVVEKLGL 84 (192)
Q Consensus 56 ~~~F~~~---D~~~~g~l~~~e~~~~l~~~~~ 84 (192)
+.+|..| -......++-..|..+++.+++
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i 33 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGI 33 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCC
Confidence 4555555 3445666888899888887644
No 150
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.17 E-value=13 Score=30.71 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=44.8
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHH
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFEL 189 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 189 (192)
.+.++|-..- --+|+|+-..-+..+-.. ++ ++..+-.+++.+|.|.||.++-+||.-
T Consensus 445 ~yde~fy~l~-p~~gk~sg~~ak~~mv~s--kl--pnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 445 TYDEIFYTLS-PVNGKLSGRNAKKEMVKS--KL--PNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chHhhhhccc-ccCceeccchhHHHHHhc--cC--chhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 4667777773 446899988877776554 34 677889999999999999999999964
No 151
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=60.04 E-value=17 Score=24.06 Aligned_cols=22 Identities=9% Similarity=0.560 Sum_probs=17.7
Q ss_pred HHHhccCCCcccHHHHHHHHHH
Q 039672 134 KIFDEDGNGYIDASELKRVLEC 155 (192)
Q Consensus 134 ~~~D~~~~G~I~~~el~~~l~~ 155 (192)
+.||...+.+||.++++++...
T Consensus 10 RLYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC
Confidence 4678888888888888888764
No 152
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=59.70 E-value=80 Score=24.69 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=54.5
Q ss_pred CCCCcccHHHHHHHHHHh--CCCCCHHH---Hhccc---CCCCCCCch-hHHHHHhhcCCCCCCCCCCChHHHH----HH
Q 039672 65 EKNGKIKKERAKKVVEKL--GLIYNEDE---KSSFD---LPGTGLEDE-VPVEEALGLGLGELDGEGCGRDELL----RK 131 (192)
Q Consensus 65 ~~~g~l~~~e~~~~l~~~--~~~~~~~~---~~~~~---~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 131 (192)
.-||.++..|+. +.+.+ .+.++.++ +..++ .....++.+ +..+...+. ...+.+ ..
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~----------~r~~l~~~lL~~ 135 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCG----------GRFDLLRMFLEI 135 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhc----------ccHHHHHHHHHH
Confidence 459999999997 33333 23444544 66666 555677888 777766552 222222 44
Q ss_pred HHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Q 039672 132 AFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKV 173 (192)
Q Consensus 132 ~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 173 (192)
.|..- --||.++..|-.-+ ......++++..++..+...
T Consensus 136 l~~vA--~ADG~l~~~E~~~L-~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 136 QIQAA--FADGSLHPNERQVL-YVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred HHHHH--HhcCCCCHHHHHHH-HHHHHHcCCCHHHHHHHHHH
Confidence 44444 34588998884333 33221122278887777665
No 153
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=58.65 E-value=5.5 Score=31.04 Aligned_cols=36 Identities=8% Similarity=0.188 Sum_probs=31.8
Q ss_pred hhhhhHHHHHHHhhccCCCCCCccccccCChhhHHh
Q 039672 7 ACSRLIGDLVQAIGVSRPRSSSSHNIVTNSTRECEQ 42 (192)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (192)
.++.++++++++|....|+.+.++.....++|.+.+
T Consensus 238 ~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~r 273 (355)
T KOG0033|consen 238 TVTPEAKSLIRRMLTVNPKKRITADEALKHPWICNR 273 (355)
T ss_pred cCCHHHHHHHHHHhccChhhhccHHHHhCCchhcch
Confidence 567789999999999999999999999999997743
No 154
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=58.34 E-value=9.1 Score=36.90 Aligned_cols=50 Identities=16% Similarity=0.035 Sum_probs=34.6
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc------CCCCCCCch-hHHH
Q 039672 58 LRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD------LPGTGLEDE-VPVE 108 (192)
Q Consensus 58 ~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~------~~g~i~~~e-~~~~ 108 (192)
.|+.+|+|+.|.|++.+|..++.. ....+..++.-++ .+..++|++ +.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 366779999999999999999873 2345666665555 455566665 5444
No 155
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=55.45 E-value=21 Score=21.36 Aligned_cols=22 Identities=14% Similarity=0.554 Sum_probs=19.9
Q ss_pred HHHhccCCCcccHHHHHHHHHH
Q 039672 134 KIFDEDGNGYIDASELKRVLEC 155 (192)
Q Consensus 134 ~~~D~~~~G~I~~~el~~~l~~ 155 (192)
++||...+.+|+.+++.++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 5789999999999999999875
No 156
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.44 E-value=7.4 Score=35.63 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhhC
Q 039672 126 DELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMMG 192 (192)
Q Consensus 126 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 192 (192)
...+...|+..|..++|.|+..+-...+...|. .+..+-.++...|..+.|.++..+|...++
T Consensus 10 q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L----~~qvl~qiws~~d~~~~g~l~~q~f~~~lr 72 (847)
T KOG0998|consen 10 QPLFDQYFKSADPQGDGRITGAEAVAFLSKSGL----PDQVLGQIWSLADSSGKGFLNRQGFYAALR 72 (847)
T ss_pred cchHHHhhhccCcccCCcccHHHhhhhhhcccc----chhhhhccccccccccCCccccccccccch
Confidence 357788999999999999999999999988776 567778888899999999999988876653
No 157
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=54.30 E-value=35 Score=21.72 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=26.8
Q ss_pred CcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Q 039672 142 GYIDASELKRVLECLGLDKGWDMGEIEKMLKVVD 175 (192)
Q Consensus 142 G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d 175 (192)
..||.+||.+.-+..|+++ +..+.+.++...-
T Consensus 13 n~iT~~eLlkyskqy~i~i--t~~QA~~I~~~lr 44 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISI--TKKQAEQIANILR 44 (85)
T ss_pred hcCCHHHHHHHHHHhCCCC--CHHHHHHHHHHHh
Confidence 5788999999999999988 9888888877653
No 158
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=53.76 E-value=22 Score=21.71 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=12.7
Q ss_pred HHHhhcCCCCceeehHHHHHhh
Q 039672 170 MLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 170 ~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
+...|+.=..++|+.++|++.+
T Consensus 30 l~~~Y~~~k~~kIsR~~fvr~l 51 (70)
T PF12174_consen 30 LQKHYEEFKKKKISREEFVRKL 51 (70)
T ss_pred HHHHHHHHHHCCCCHHHHHHHH
Confidence 3334443445677777777655
No 159
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=53.64 E-value=29 Score=29.49 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=45.4
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHh---hcC----C-CCceeehHHHHHhh
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKV---VDL----N-LDGKVDFCEFELMM 191 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~---~d~----~-~~g~i~~~eF~~~~ 191 (192)
.-+|..|-..+++.|++.-|..+|+..|+.. ++-.+..++.. ++. + ..+.++.+.|.+++
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrt--sDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRT--SDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCc--CCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 4578888666679999999999999999987 76666665554 343 1 23568999998775
No 160
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=52.80 E-value=20 Score=35.20 Aligned_cols=64 Identities=8% Similarity=-0.142 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCC----CHHHHhccc-------CCCCCCCch-hHHHHHhh
Q 039672 47 AGPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIY----NEDEKSSFD-------LPGTGLEDE-VPVEEALG 112 (192)
Q Consensus 47 ~~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~----~~~~~~~~~-------~~g~i~~~e-~~~~~~~~ 112 (192)
.++.+.+++.++++.+|++..|.|...++..+++.+..++ ..+. +++ .++.|+|.+ +.++....
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--KLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--eeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 3455678999999999999999999999999999874432 2222 333 789999999 66665544
No 161
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=52.25 E-value=4.2 Score=27.99 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=28.8
Q ss_pred cCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 139 DGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 139 ~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
--||.|+.+|...+...+....++++.+...+...++.-....+++++|+..+
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 87 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLREL 87 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34788888888777665511111255566666666554444455666665443
No 162
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=51.97 E-value=70 Score=21.38 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVD 175 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d 175 (192)
+--+|-+....++..+|.++++.+|+..|..+ .+..+..+++...
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~AaGveV--e~~~~~lf~~~L~ 47 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSVGVEV--DDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCc--cHHHHHHHHHHHc
Confidence 34566777778888999999999999999988 7777777776664
No 163
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.55 E-value=74 Score=22.40 Aligned_cols=87 Identities=17% Similarity=0.107 Sum_probs=56.1
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHh--CCCCCHHHHhccc------CCCCCCCch-hHHHHHhhcCCCCCCCCCCChHH
Q 039672 57 ALRAVFGMEKNGKIKKERAKKVVEKL--GLIYNEDEKSSFD------LPGTGLEDE-VPVEEALGLGLGELDGEGCGRDE 127 (192)
Q Consensus 57 ~~F~~~D~~~~g~l~~~e~~~~l~~~--~~~~~~~~~~~~~------~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~ 127 (192)
-+|... +-+|.++..|...+...+ .+.++..++..++ +...+++.. ...+...+ ..+ .+.+
T Consensus 34 Llf~Vm--~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~L----d~e----~R~e 103 (148)
T COG4103 34 LLFHVM--EADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHL----DEE----QRLE 103 (148)
T ss_pred HHHHHH--hcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CHH----HHHH
Confidence 566666 446778888876655443 5678888888877 677788888 77776666 222 3344
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHH
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLEC 155 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~~ 155 (192)
.+...+.+. .-||.++.-|-.-+++.
T Consensus 104 li~~mweIa--~ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 104 LIGLMWEIA--YADGELDESEDHVIWRV 129 (148)
T ss_pred HHHHHHHHH--HccccccHHHHHHHHHH
Confidence 455555554 45678887776655554
No 164
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=50.35 E-value=35 Score=27.70 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=33.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 140 GNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 140 ~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
+.|.||++|-...++...... +++.++.+++..+ |+-+||.+.+
T Consensus 299 R~G~itReeal~~v~~~d~~~--~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEF--PKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccc--cHHHHHHHHHHhC------CCHHHHHHHh
Confidence 458999999888888854444 5677888888887 6777777665
No 165
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=50.12 E-value=33 Score=24.17 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHH----------HhhcCCCCceeehHHHHHhh
Q 039672 149 LKRVLECLGLDKGWDMGEIEKML----------KVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 149 l~~~l~~~g~~~~~~~~~~~~~~----------~~~d~~~~g~i~~~eF~~~~ 191 (192)
+.+-++++|+.+ +++|+..++ ..+-.+..|..+...+.+++
T Consensus 95 l~~e~eklGi~V--s~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 95 LEQEFEKLGITV--SDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHHHHhCCcc--CHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 556666778777 888877777 11234578889888887764
No 166
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=47.07 E-value=26 Score=21.91 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=21.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Q 039672 140 GNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVD 175 (192)
Q Consensus 140 ~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d 175 (192)
..|+||++++..+|.... + +.+.++.++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~--~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--L--DPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-------HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccC--C--CHHHHHHHHHHHH
Confidence 468999999999997543 3 7888888887764
No 167
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=46.70 E-value=66 Score=22.50 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=24.2
Q ss_pred CCCcccHHHHHHHHHH-hCCCCCCCHHHHHHHHHhhcC
Q 039672 140 GNGYIDASELKRVLEC-LGLDKGWDMGEIEKMLKVVDL 176 (192)
Q Consensus 140 ~~G~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~d~ 176 (192)
..+.|+++.|+..|+. ++..+ +++.+..++..+-.
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~--P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDL--PEDLCQHLFLSFQK 80 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S----HHHHHHHHHHS--
T ss_pred CCCCcCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHhC
Confidence 3459999999999998 56666 88888888888743
No 168
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=46.27 E-value=9.5 Score=28.38 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=38.3
Q ss_pred HHHHhc-cCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 133 FKIFDE-DGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 133 F~~~D~-~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
|-..|+ -.||++|..||.-+- .++..-+.=+..++..+|.|+||.|+.+||..++
T Consensus 193 f~qld~~p~d~~~sh~el~pl~----ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLR----APLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCcccccccccccccc----CCcccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 444454 458999999986543 2221123335778899999999999999997664
No 169
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=45.76 E-value=43 Score=24.66 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=25.3
Q ss_pred hccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcC
Q 039672 137 DEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDL 176 (192)
Q Consensus 137 D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~ 176 (192)
..|.+|++..+++.+.+..-+..+ +.+++..++..-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~--t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWV--TEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT----HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCC--CHHHHHHHHhhCCC
Confidence 468889999999999998877777 89999999877553
No 170
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=45.41 E-value=1.2e+02 Score=23.42 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHh----cCCCCC----cccHHHHHHHHHHhCCCCCHHHHhccc-CCCCCC
Q 039672 48 GPVDDLMLRALRAVF----GMEKNG----KIKKERAKKVVEKLGLIYNEDEKSSFD-LPGTGL 101 (192)
Q Consensus 48 ~~~~~~e~~~~F~~~----D~~~~g----~l~~~e~~~~l~~~~~~~~~~~~~~~~-~~g~i~ 101 (192)
...+..+++++|... =+|.+. .-....|.. |..+-.-++.++.+.+. ..|.|+
T Consensus 24 r~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~-l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 24 RDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQ-LQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHH-HHHHHHHhhHHHHHHHHhccCCCC
Confidence 345678888888654 233331 112333433 22233446777888877 777777
No 171
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=44.63 E-value=84 Score=20.21 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHH
Q 039672 53 LMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKA 132 (192)
Q Consensus 53 ~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (192)
..++.+|..+ .|.+|.++...|..+|..+ +.+-.... +.. ..+..+..++.+
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~----------------------lqip~~vg----E~~-aFg~~e~sv~sC 54 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDV----------------------LQIPRAVG----EGP-AFGYIEPSVRSC 54 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHH----------------------HHHHHHTT-----GG-GGT--HHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHH----------------------HHHHHHhC----ccc-cccCcHHHHHHH
Confidence 4678889888 8889999999999988854 11111111 111 011345567777
Q ss_pred HHHHhccCCCcccHHHHHHHHHH
Q 039672 133 FKIFDEDGNGYIDASELKRVLEC 155 (192)
Q Consensus 133 F~~~D~~~~G~I~~~el~~~l~~ 155 (192)
|..- ...-.|+.++|..++..
T Consensus 55 F~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 55 FQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHT--TT-S-B-HHHHHHHHHT
T ss_pred hccc--CCCCccCHHHHHHHHHh
Confidence 7776 36678999999988865
No 172
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=42.98 E-value=37 Score=20.05 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=21.5
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 039672 143 YIDASELKRVLECLGLDKGWDMGEIEKML 171 (192)
Q Consensus 143 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 171 (192)
.|+.++|..+|+.....+ +.++++..-
T Consensus 29 ~it~~DF~~Al~~~kpSV--s~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSV--SQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS---HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 589999999999988877 888876543
No 173
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.93 E-value=32 Score=28.25 Aligned_cols=40 Identities=20% Similarity=0.123 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHH
Q 039672 52 DLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEK 91 (192)
Q Consensus 52 ~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~ 91 (192)
...++++|+..|+.++|+|+.+-++.++..++..+++.+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~ 347 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAY 347 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHH
Confidence 4788999999999999999999999999988755555443
No 174
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=42.78 E-value=54 Score=24.02 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=29.8
Q ss_pred ccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Q 039672 138 EDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVD 175 (192)
Q Consensus 138 ~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d 175 (192)
.|.+|.+..+++.+.++.-+..+ +.+++.+++..-|
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~--t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWV--TRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCC--CHHHHHHHHHcCC
Confidence 57889999999999998666666 8999988887654
No 175
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=42.36 E-value=62 Score=21.62 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc--CCCCCCCch-hHHHHHh
Q 039672 55 LRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD--LPGTGLEDE-VPVEEAL 111 (192)
Q Consensus 55 ~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~--~~g~i~~~e-~~~~~~~ 111 (192)
+...|-.++..++--.+..+++.+|.+.|.....+.+..++ -+|. +.+| +..=...
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~GK-~i~ElIA~G~ek 61 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKGK-DIEELIAAGREK 61 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcCC-CHHHHHHHhHHH
Confidence 34556677777777889999999999999999999888887 3444 5666 5443333
No 176
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=40.14 E-value=53 Score=19.59 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=32.7
Q ss_pred cCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCC
Q 039672 139 DGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNL 178 (192)
Q Consensus 139 ~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~ 178 (192)
+.++.++..++...|...|..+ +++-+...++.++.++
T Consensus 9 ~~~~P~g~~~l~~~L~~~g~~~--se~avRrrLr~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRGEEL--SEEAVRRRLRAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHhcChhh--hHHHHHHHHHHHHHCC
Confidence 4567899999999999999988 9999999998887665
No 177
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=39.72 E-value=1.2e+02 Score=20.46 Aligned_cols=44 Identities=32% Similarity=0.390 Sum_probs=34.1
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVD 175 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d 175 (192)
-.+|-+.-.-++-.+|.++++.+|+..|..+ .+..+..+++.+.
T Consensus 4 vaAyll~~l~g~~~pta~dI~~IL~AaGvev--d~~~~~~f~~~L~ 47 (113)
T PLN00138 4 VAAYLLAVLGGNTCPSAEDLKDILGSVGADA--DDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHcCCcc--cHHHHHHHHHHHc
Confidence 3455666667778899999999999999987 7777777776663
No 178
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=39.48 E-value=1.2e+02 Score=20.86 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhccC--CCcccHHHHHHHHHHhC------CCC--CCC--------HHHHHHHHHhhcCCCCceeehHHH
Q 039672 126 DELLRKAFKIFDEDG--NGYIDASELKRVLECLG------LDK--GWD--------MGEIEKMLKVVDLNLDGKVDFCEF 187 (192)
Q Consensus 126 ~~~~~~~F~~~D~~~--~G~I~~~el~~~l~~~g------~~~--~~~--------~~~~~~~~~~~d~~~~g~i~~~eF 187 (192)
...+.++|+...... +..|+..++..++..+- .+. .++ +--+.+++..+|.+..|+|+--.|
T Consensus 40 l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 446677887775444 47799999999988752 111 001 112477888899999999998877
Q ss_pred HHh
Q 039672 188 ELM 190 (192)
Q Consensus 188 ~~~ 190 (192)
.-+
T Consensus 120 Kva 122 (127)
T PF09068_consen 120 KVA 122 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 179
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=39.33 E-value=52 Score=23.71 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVV 174 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~ 174 (192)
....++..|++.+-..+...++..+|...+ |+.+.+|++++...+..+
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c---GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKAC---GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHTT---TTT----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHc---CCCeEECHHHHHHHHHHH
Confidence 345688889998866666689999998876 666666999998776654
No 180
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=39.15 E-value=68 Score=17.57 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHH
Q 039672 146 ASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFE 188 (192)
Q Consensus 146 ~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 188 (192)
.+|....|..+|+ ++.++..++..... ...++-++.+
T Consensus 3 ~~d~~~AL~~LGy----~~~e~~~av~~~~~--~~~~~~e~~i 39 (47)
T PF07499_consen 3 LEDALEALISLGY----SKAEAQKAVSKLLE--KPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHHTTS-----HHHHHHHHHHHHH--STTS-HHHHH
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHhhc--CCCCCHHHHH
Confidence 3677788888887 78888888888864 2224555544
No 181
>PLN02228 Phosphoinositide phospholipase C
Probab=38.92 E-value=1.7e+02 Score=25.72 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 039672 48 GPVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKL 82 (192)
Q Consensus 48 ~~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~ 82 (192)
......|+..+|..+-. ++.++.++|..+|...
T Consensus 19 ~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~ 51 (567)
T PLN02228 19 TREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEV 51 (567)
T ss_pred CCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHh
Confidence 34467899999998843 3579999999999854
No 182
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=38.08 E-value=1.1e+02 Score=19.85 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHhccc-CCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHHHHHHhccCCCcccHH
Q 039672 69 KIKKERAKKVVEKLGLIYNEDEKSSFD-LPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKAFKIFDEDGNGYIDAS 147 (192)
Q Consensus 69 ~l~~~e~~~~l~~~~~~~~~~~~~~~~-~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~ 147 (192)
.+...+++.+.+.+| +++.++..+- .+.. ...+.....++.+=..+-..=+..
T Consensus 17 ~~~~~~wK~faR~lg--lse~~Id~I~~~~~~------------------------d~~Eq~~qmL~~W~~~~G~~a~~~ 70 (97)
T cd08316 17 VMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQ------------------------DTAEQKVQLLRAWYQSHGKTGAYR 70 (97)
T ss_pred HcCHHHHHHHHHHcC--CCHHHHHHHHHcCCC------------------------ChHHHHHHHHHHHHHHhCCCchHH
Confidence 366778888888776 5555555543 1111 222333334444423222233457
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHH
Q 039672 148 ELKRVLECLGLDKGWDMGEIEKMLK 172 (192)
Q Consensus 148 el~~~l~~~g~~~~~~~~~~~~~~~ 172 (192)
.+.+.|..++... ..+.+..++.
T Consensus 71 ~Li~aLr~~~l~~--~Ad~I~~~l~ 93 (97)
T cd08316 71 TLIKTLRKAKLCT--KADKIQDIIE 93 (97)
T ss_pred HHHHHHHHccchh--HHHHHHHHHH
Confidence 8888898888876 6777766654
No 183
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=37.61 E-value=1.2e+02 Score=19.94 Aligned_cols=57 Identities=11% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHh----hcCCCCceeehHHHHHh
Q 039672 126 DELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKV----VDLNLDGKVDFCEFELM 190 (192)
Q Consensus 126 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~----~d~~~~g~i~~~eF~~~ 190 (192)
-..+..-|..+-. +|++....|-.++ |.+- +.+-..+++.. .... ...|+.+|...+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~d--SkeFA~eLFdALaRrr~i~-~~~I~k~eL~ef 89 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKD--SKEFAGELFDALARRRGIK-GDSITKDELKEF 89 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S---HHHHHHHHHHHHHHTT---SSEE-HHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcc--cHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHH
Confidence 5567777888866 8999999999998 6554 55544444443 3444 356888876654
No 184
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=36.95 E-value=32 Score=29.98 Aligned_cols=62 Identities=19% Similarity=0.097 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc------CCCCCCCch-hHHHHHhh
Q 039672 51 DDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD------LPGTGLEDE-VPVEEALG 112 (192)
Q Consensus 51 ~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~------~~g~i~~~e-~~~~~~~~ 112 (192)
+....+.-|..+|.|+.|.++..+...+|+..+...+...+.+++ .+|.+...| ..++....
T Consensus 591 ~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 591 DFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 334555678888999999999999999999988777777666655 467777777 66666554
No 185
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=36.48 E-value=1.4e+02 Score=20.40 Aligned_cols=93 Identities=14% Similarity=0.093 Sum_probs=55.8
Q ss_pred cccHHHHHHHHHHhCCCCCHHH-Hhccc---CCCCCCCch-hHHHHHhhcCCCCCCCCCCChHHHHHHH----------H
Q 039672 69 KIKKERAKKVVEKLGLIYNEDE-KSSFD---LPGTGLEDE-VPVEEALGLGLGELDGEGCGRDELLRKA----------F 133 (192)
Q Consensus 69 ~l~~~e~~~~l~~~~~~~~~~~-~~~~~---~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------F 133 (192)
.+++.+++.+++.+|+.+.+-+ +..+. +++.+-+++ ....-... .. ..++.. +
T Consensus 5 ~mnpr~l~k~mkqmGi~~eeld~v~~V~i~~kd~e~vi~~P~V~~~~~~-----------g~-~~yqi~g~~~~~~~~~~ 72 (122)
T COG1308 5 GMNPRKLKKLMKQMGIDVEELDGVERVIIKLKDTEYVIENPQVTVMKAM-----------GQ-KTYQISGDPSAKEAVKK 72 (122)
T ss_pred cCCHHHHHHHHHHhCCCceeccCceEEEEEcCCceEEeeCCcEEeehhc-----------ch-hHHHHhcchhhhccccc
Confidence 3899999999999997665544 44433 666677777 33321111 00 111111 1
Q ss_pred HHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCC
Q 039672 134 KIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLN 177 (192)
Q Consensus 134 ~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~ 177 (192)
..=.....+.|+-++++-++...|. +.++....+...+.|
T Consensus 73 ~ee~~~d~~~i~eeDIkLV~eQa~V----sreeA~kAL~e~~GD 112 (122)
T COG1308 73 PEEKTVDESDISEEDIKLVMEQAGV----SREEAIKALEEAGGD 112 (122)
T ss_pred chhcccccCCCCHHHHHHHHHHhCC----CHHHHHHHHHHcCCc
Confidence 0111222346999999999998877 788888777776533
No 186
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=35.62 E-value=95 Score=18.21 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=24.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhh
Q 039672 141 NGYIDASELKRVLECLGLDKGWDMGEIEKMLKVV 174 (192)
Q Consensus 141 ~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~ 174 (192)
+-.+|.+|+...+..++..+ +..++-.++..+
T Consensus 7 s~~lTeEEl~~~i~~L~~~~--~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIP--NRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCC--CHHHHHHHHHHH
Confidence 34688899999999988877 787777666554
No 187
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=35.60 E-value=54 Score=22.82 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=39.6
Q ss_pred ccCCCcccHHHHHHHHHHh-------CCCCCCCHHHHHHHHHhhcCCCCce-eehHHHHHh
Q 039672 138 EDGNGYIDASELKRVLECL-------GLDKGWDMGEIEKMLKVVDLNLDGK-VDFCEFELM 190 (192)
Q Consensus 138 ~~~~G~I~~~el~~~l~~~-------g~~~~~~~~~~~~~~~~~d~~~~g~-i~~~eF~~~ 190 (192)
.=|+-.||.+||.+++..- |.-+.++++++..+...+...+.+. +++.+-+++
T Consensus 78 alGd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 78 ALGDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred EECCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 3567899999999999864 2222358999999999998766654 888876654
No 188
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=35.40 E-value=75 Score=26.74 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhccCCCcccHHHHHHHHHH
Q 039672 125 RDELLRKAFKIFDEDGNGYIDASELKRVLEC 155 (192)
Q Consensus 125 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 155 (192)
..+.++.+-+..|.|++|.|+.+|--.+|+.
T Consensus 66 g~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 66 GYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred hHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 4568899999999999999999998888876
No 189
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=34.90 E-value=1.4e+02 Score=20.36 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHh-CCCCCCCHHHHHHHHHhhc
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECL-GLDKGWDMGEIEKMLKVVD 175 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~~~d 175 (192)
...+++..+|++|-. +.|+.+.+..++... |..+ |..+++.+...+-
T Consensus 34 tf~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~L--T~~Qi~Yl~~~~~ 81 (122)
T PF06648_consen 34 TFLDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKL--TRSQIDYLYNRVY 81 (122)
T ss_pred hHHHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhc--CHHHHHHHHHHHH
Confidence 667889999999964 479999999999876 4666 8888776655543
No 190
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=34.29 E-value=82 Score=19.31 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHhCCCCCCCHHHHHH
Q 039672 145 DASELKRVLECLGLDKGWDMGEIEK 169 (192)
Q Consensus 145 ~~~el~~~l~~~g~~~~~~~~~~~~ 169 (192)
++.+|...|...|+++..+.+++..
T Consensus 47 s~~eF~~~L~~~gI~~~~~~eel~~ 71 (76)
T PF03683_consen 47 SRWEFLELLKERGIPINYDEEELEE 71 (76)
T ss_pred CHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 5666777777777665555655543
No 191
>PRK00523 hypothetical protein; Provisional
Probab=33.95 E-value=1.2e+02 Score=18.70 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhh
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVV 174 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~ 174 (192)
.+..|+.+ ...+-.|+.+-++..+...|.++ |+..+..+.+..
T Consensus 26 ark~~~k~-l~~NPpine~mir~M~~QMGqKP--Sekki~Q~m~~m 68 (72)
T PRK00523 26 SKKMFKKQ-IRENPPITENMIRAMYMQMGRKP--SESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHH-HHHCcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHH
Confidence 34555555 34567899999999999999999 999999988776
No 192
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=33.89 E-value=89 Score=20.88 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Q 039672 145 DASELKRVLECLGLDKGWDMGEIEKMLKV 173 (192)
Q Consensus 145 ~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 173 (192)
+.+|++.++......+ ++++++.++..
T Consensus 80 ~~dElrai~~~~~~~~--~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAKERYTL--SPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHHhccCC--CHHHHHHHHHH
Confidence 3555555555554444 56666555543
No 193
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=32.73 E-value=57 Score=25.48 Aligned_cols=49 Identities=6% Similarity=0.040 Sum_probs=24.7
Q ss_pred cCCCcccHHHHHHHHHHhC--CCCCCCHHHHHHHHHhhcCCCCceeehHHHHHh
Q 039672 139 DGNGYIDASELKRVLECLG--LDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELM 190 (192)
Q Consensus 139 ~~~G~I~~~el~~~l~~~g--~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 190 (192)
.-||.|+..|+. +.+.+- ..+ ++++-..+...+...+....++++|++.
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l--~~~~r~~a~~lf~~~k~~~~~l~~~~~~ 117 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNL--HGEARRAAQQAFREGKEPDFPLREKLRQ 117 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCC--CHHHHHHHHHHHHHhcccCCCHHHHHHH
Confidence 336777777776 333321 222 5555334444444444444666666654
No 194
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=32.57 E-value=1.1e+02 Score=18.25 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=33.5
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVD 175 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d 175 (192)
+..|+.+ ...+--|+.+-++..+...|.++ |+..+..+....-
T Consensus 19 r~~~~k~-l~~NPpine~mir~M~~QMG~kp--Sekqi~Q~m~~mk 61 (64)
T PF03672_consen 19 RKYMEKQ-LKENPPINEKMIRAMMMQMGRKP--SEKQIKQMMRSMK 61 (64)
T ss_pred HHHHHHH-HHHCCCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHH
Confidence 4445554 24467899999999999999999 9999998887653
No 195
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=32.56 E-value=2e+02 Score=20.93 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCC
Q 039672 49 PVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIY 86 (192)
Q Consensus 49 ~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~ 86 (192)
++-+.|+-++|..+- ++.+-+...++..++..|.++.
T Consensus 10 ~EiEDEILe~Ya~~~-~~~~D~~l~~Lp~~f~~L~IP~ 46 (170)
T PF08730_consen 10 PEIEDEILEAYAEYT-EDEQDMTLKDLPNYFEDLQIPK 46 (170)
T ss_pred hHHHHHHHHHHHHhc-CCccceeHHHHHHHHHHcCCCh
Confidence 344678888898883 3366788999999999886663
No 196
>PLN02222 phosphoinositide phospholipase C 2
Probab=32.34 E-value=2.7e+02 Score=24.66 Aligned_cols=32 Identities=6% Similarity=0.182 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 039672 49 PVDDLMLRALRAVFGMEKNGKIKKERAKKVVEKL 82 (192)
Q Consensus 49 ~~~~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~ 82 (192)
.....++..+|..+-. ++.++.++|..+|...
T Consensus 21 ~~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~ 52 (581)
T PLN02222 21 SEAPREIKTIFEKYSE--NGVMTVDHLHRFLIDV 52 (581)
T ss_pred CCCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHh
Confidence 3456799999999843 4799999999999865
No 197
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=32.11 E-value=56 Score=20.04 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=23.4
Q ss_pred CCCcccHHHHHHHHHHh---------CCCCCHHHHhcccCCCCCCCc
Q 039672 66 KNGKIKKERAKKVVEKL---------GLIYNEDEKSSFDLPGTGLED 103 (192)
Q Consensus 66 ~~g~l~~~e~~~~l~~~---------~~~~~~~~~~~~~~~g~i~~~ 103 (192)
..|++..+||..++... ....+..+++++..+|.|+-+
T Consensus 27 ~~Gkv~~ee~n~~~e~~p~~~~~lAk~~G~t~~~l~~~~~~Gkit~~ 73 (75)
T TIGR02675 27 ASGKLRGEEINSLLEALPGALQALAKAMGVTRGELRKMLSDGKLTAD 73 (75)
T ss_pred HcCcccHHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHHHCCCCccc
Confidence 47888888887776542 223455566665566666544
No 198
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=31.65 E-value=55 Score=16.51 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=12.1
Q ss_pred CCcccHHHHHHHHHHh
Q 039672 141 NGYIDASELKRVLECL 156 (192)
Q Consensus 141 ~G~I~~~el~~~l~~~ 156 (192)
.|.|+.+|+..+....
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5788888888877654
No 199
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=31.31 E-value=59 Score=23.13 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHhccCCCcccH-----HHHHHHHHHhC----CCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDA-----SELKRVLECLG----LDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~-----~el~~~l~~~g----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
+....+.+.|+.|-.-++-.-+- ..+-.+++.++ ..+ +.-.+...+..+-.-.-+.++|++|..+|
T Consensus 9 ~~~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~v--T~tdt~i~fsKvkg~~~~~~tf~~fkkal 83 (180)
T KOG4070|consen 9 PDMAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSV--TGTDTDIVFSKVKGKKARTITFEEFKKAL 83 (180)
T ss_pred cchhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcc--cccccceeeeeccccccccccHHHHHHHH
Confidence 44456777888887666544443 34566677664 233 44444555555544445678888886554
No 200
>PHA02105 hypothetical protein
Probab=30.47 E-value=1.2e+02 Score=17.74 Aligned_cols=47 Identities=9% Similarity=0.107 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHHh---CCCCCCCHHHHHHHHHhhcCCC--CceeehHHHHHhh
Q 039672 143 YIDASELKRVLECL---GLDKGWDMGEIEKMLKVVDLNL--DGKVDFCEFELMM 191 (192)
Q Consensus 143 ~I~~~el~~~l~~~---g~~~~~~~~~~~~~~~~~d~~~--~g~i~~~eF~~~~ 191 (192)
+++.+|++.++..- ..++ ..+.++.+-..+..-. ---++|+||.+.|
T Consensus 4 klt~~~~~~a~~~ndq~eyp~--~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPV--ELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccc--cHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 46777787777664 2344 4444555444443222 2247888886654
No 201
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.13 E-value=92 Score=21.00 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHhh
Q 039672 144 IDASELKRVLECLGLDKGWDMGEIEKMLKVV 174 (192)
Q Consensus 144 I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~ 174 (192)
-|..|++.++..-+..+ ++++++.++.-.
T Consensus 80 ~t~~ElRsIla~e~~~~--s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVML--SDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCC--CHHHHHHHHHHH
Confidence 36778888888888888 888888776544
No 202
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.11 E-value=1.6e+02 Score=19.07 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhcccCCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHH
Q 039672 52 DLMLRALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFDLPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRK 131 (192)
Q Consensus 52 ~~e~~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (192)
...++..|..+ ...|...+++.+.+.+| +++.++..+-.+..- . .+....
T Consensus 3 ~~~l~~~f~~i----~~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~~-----------------------~-~eq~~q 52 (96)
T cd08315 3 QETLRRSFDHF----IKEVPFDSWNRLMRQLG--LSENEIDVAKANERV-----------------------T-REQLYQ 52 (96)
T ss_pred HhHHHHHHHHH----HHHCCHHHHHHHHHHcC--CCHHHHHHHHHHCCC-----------------------C-HHHHHH
Confidence 35667777766 23367788888888886 555555544200011 2 455555
Q ss_pred HHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 039672 132 AFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLK 172 (192)
Q Consensus 132 ~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 172 (192)
.+..+=...-..-+...|.++|..++... ..+.++..+.
T Consensus 53 mL~~W~~~~G~~At~~~L~~aL~~~~~~~--~Ae~I~~~l~ 91 (96)
T cd08315 53 MLLTWVNKTGRKASVNTLLDALEAIGLRL--AKESIQDELI 91 (96)
T ss_pred HHHHHHHhhCCCcHHHHHHHHHHHccccc--HHHHHHHHHH
Confidence 55666333333567889999999999887 7777766543
No 203
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=29.90 E-value=1.4e+02 Score=19.04 Aligned_cols=7 Identities=29% Similarity=0.624 Sum_probs=2.8
Q ss_pred CcccHHH
Q 039672 142 GYIDASE 148 (192)
Q Consensus 142 G~I~~~e 148 (192)
|.++.+|
T Consensus 14 G~v~~~E 20 (106)
T cd07316 14 GRVSEAE 20 (106)
T ss_pred CCcCHHH
Confidence 3444333
No 204
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.27 E-value=1.4e+02 Score=18.22 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVD 175 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d 175 (192)
.++.|..+ ...+-.|+.+-++.++...|.++ |+..++.+.+.+-
T Consensus 25 ark~~~k~-lk~NPpine~~iR~M~~qmGqKp--Se~kI~Qvm~~i~ 68 (71)
T COG3763 25 ARKQMKKQ-LKDNPPINEEMIRMMMAQMGQKP--SEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHH-HhhCCCCCHHHHHHHHHHhCCCc--hHHHHHHHHHHHH
Confidence 34555555 34457899999999999999999 9999999887654
No 205
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=29.23 E-value=2.2e+02 Score=24.51 Aligned_cols=77 Identities=14% Similarity=0.050 Sum_probs=49.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhCCCCCHHHHhccc--CCCCC---CCch-hHHHHHhhcCCCCCCCCCCChHHHH
Q 039672 56 RALRAVFGMEKNGKIKKERAKKVVEKLGLIYNEDEKSSFD--LPGTG---LEDE-VPVEEALGLGLGELDGEGCGRDELL 129 (192)
Q Consensus 56 ~~~F~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~--~~g~i---~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (192)
..+|..+-+.+...++..++..++.++|......+-...| +.++. .|.. +.....-+ ..-+.+
T Consensus 488 t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~gv~yl~v~~~i~sel-----------~D~d~v 556 (612)
T COG5069 488 TALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVSGVFYLDVLKGIHSEL-----------VDYDLV 556 (612)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccccchHHHHHHHHhhhh-----------cChhhh
Confidence 3567766666666799999999999999988776666666 33333 4444 44444333 444567
Q ss_pred HHHHHHHhccCCCc
Q 039672 130 RKAFKIFDEDGNGY 143 (192)
Q Consensus 130 ~~~F~~~D~~~~G~ 143 (192)
+.+|..+|.--|+.
T Consensus 557 ~~~~~~f~diad~r 570 (612)
T COG5069 557 TRGFTEFDDIADAR 570 (612)
T ss_pred hhhHHHHHHhhhhh
Confidence 77777776544443
No 206
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=29.19 E-value=1.1e+02 Score=18.43 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=27.6
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHh----CCCCCCCHHHHHHHHHhh
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLECL----GLDKGWDMGEIEKMLKVV 174 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~----g~~~~~~~~~~~~~~~~~ 174 (192)
.+..+....+....--+-..+++.++..+ |... +++.++.+|+.|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~--~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVV--TEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS----HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHhh
Confidence 45556666655545556677788887776 5555 677778888765
No 207
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.18 E-value=42 Score=33.11 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHH-HHHHHHhhcCCCCceeehHHHHHh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGE-IEKMLKVVDLNLDGKVDFCEFELM 190 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~-~~~~~~~~d~~~~g~i~~~eF~~~ 190 (192)
+..+....++..||.+..|.|...++...++.+..++++.... -.-+...+....++.|++.+-+.+
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~a 1481 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFA 1481 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHH
Confidence 6678899999999999999999999999999885544211110 011222233345566666654443
No 208
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=29.06 E-value=1.2e+02 Score=17.83 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=18.3
Q ss_pred cccHHHHHHHHHHhCC----CCCCCHHHHHHHHH
Q 039672 143 YIDASELKRVLECLGL----DKGWDMGEIEKMLK 172 (192)
Q Consensus 143 ~I~~~el~~~l~~~g~----~~~~~~~~~~~~~~ 172 (192)
.|..+||...|...|. .+ +...+.+.+.
T Consensus 24 PI~L~el~~~L~~~g~~~~~~~--~~~~l~~~lD 55 (64)
T PF09494_consen 24 PINLEELHAWLKASGIGFDRKV--DPSKLKEWLD 55 (64)
T ss_pred CccHHHHHHHHHHcCCCcccee--CHHHHHHHHH
Confidence 6777888888876666 55 5555555443
No 209
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=28.63 E-value=69 Score=23.65 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCC
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGL 158 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~ 158 (192)
...+.++++|..||.++=-..+-+++.++|...|+
T Consensus 52 ~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gI 86 (188)
T COG2818 52 KKREAFREAFHGFDPEKVAAMTEEDVERLLADAGI 86 (188)
T ss_pred HhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcch
Confidence 44568999999999999999999999999988875
No 210
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=28.46 E-value=78 Score=18.67 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=20.2
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHH
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVL 153 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l 153 (192)
.-..||.+| .++.|.|+.-++...|
T Consensus 8 ~rdkA~e~y-~~~~g~i~lkdIA~~L 32 (60)
T PF10668_consen 8 NRDKAFEIY-KESNGKIKLKDIAEKL 32 (60)
T ss_pred CHHHHHHHH-HHhCCCccHHHHHHHH
Confidence 445788888 7889999998888777
No 211
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=28.35 E-value=2.7e+02 Score=24.27 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=16.6
Q ss_pred cCCCCCcccHHHHHHHHHHh
Q 039672 63 GMEKNGKIKKERAKKVVEKL 82 (192)
Q Consensus 63 D~~~~g~l~~~e~~~~l~~~ 82 (192)
|.|.-|-|++.+++.+|+-.
T Consensus 535 DINPIGgISK~DLr~Fl~~a 554 (706)
T KOG2303|consen 535 DINPIGGISKTDLRRFLQYA 554 (706)
T ss_pred ccCCccCccHHHHHHHHHHH
Confidence 45778999999999998754
No 212
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=28.22 E-value=1.2e+02 Score=21.51 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=31.4
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Q 039672 130 RKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKV 173 (192)
Q Consensus 130 ~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 173 (192)
.++=..++++...+|..+.+..+|..+|+.- --+++..++..
T Consensus 53 sEAneic~~e~KKTIa~EHV~KALe~LgF~e--Yiee~~~vl~~ 94 (156)
T KOG0871|consen 53 SEANEICNKEAKKTIAPEHVIKALENLGFGE--YIEEAEEVLEN 94 (156)
T ss_pred HHHHHHHhHHhcccCCHHHHHHHHHHcchHH--HHHHHHHHHHH
Confidence 3566778899999999999999999999754 34444444433
No 213
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=28.22 E-value=1.3e+02 Score=18.13 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=30.3
Q ss_pred cCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 139 DGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 139 ~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
-..|.++.+|...+... +. +.+....++.....-++ =.|..|++++
T Consensus 23 ~~~~vlt~~e~~~i~~~---~~--~~~k~~~Lld~l~~kg~--~af~~F~~~L 68 (80)
T cd01671 23 LSDGVLTEEEYEKIRSE---ST--RQDKARKLLDILPRKGP--KAFQSFLQAL 68 (80)
T ss_pred HHcCCCCHHHHHHHHcC---CC--hHHHHHHHHHHHHhcCh--HHHHHHHHHH
Confidence 34588998888887643 22 45566777777765443 3677777765
No 214
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=27.93 E-value=1.4e+02 Score=21.15 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHh
Q 039672 126 DELLRKAFKIFDEDGNGYIDASELKRVLECL 156 (192)
Q Consensus 126 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~ 156 (192)
...+..-....|..+.||+|..|+|.++..+
T Consensus 68 Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 68 LQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 3455556677788888899999999998765
No 215
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.93 E-value=1.1e+02 Score=16.78 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=22.9
Q ss_pred cCCCccc-HHHHHHHHHHhCCCCCCCHHHHHHHHHhh
Q 039672 139 DGNGYID-ASELKRVLECLGLDKGWDMGEIEKMLKVV 174 (192)
Q Consensus 139 ~~~G~I~-~~el~~~l~~~g~~~~~~~~~~~~~~~~~ 174 (192)
...|.|+ ..++-..|...|..+ ++..++.+++.+
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~i--s~~l~~~~L~~~ 47 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRI--SPKLIEEILRRA 47 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCccc--CHHHHHHHHHHc
Confidence 3457776 444555556668888 888888887654
No 216
>PRK01844 hypothetical protein; Provisional
Probab=26.82 E-value=1.6e+02 Score=18.09 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhh
Q 039672 129 LRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVV 174 (192)
Q Consensus 129 ~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~ 174 (192)
.+..|+.+ ...+-.|+.+-++..+...|.++ |+..+..+.+..
T Consensus 25 ark~~~k~-lk~NPpine~mir~Mm~QMGqkP--Sekki~Q~m~~m 67 (72)
T PRK01844 25 ARKYMMNY-LQKNPPINEQMLKMMMMQMGQKP--SQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHH-HHHCCCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHH
Confidence 34555655 34557899999999999999999 999999988776
No 217
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=26.04 E-value=2e+02 Score=19.01 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHHhh
Q 039672 144 IDASELKRVLECLGLDKGWDMGEIEKMLKVV 174 (192)
Q Consensus 144 I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~ 174 (192)
||.++++++|+..|..+ ++..+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveV--e~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEI--EPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCc--CHHHHHHHHHHH
Confidence 99999999999999988 888888777775
No 218
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=26.02 E-value=75 Score=25.87 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 131 KAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 131 ~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.....+|..+.|.++.--.+-+|..+.-.- -.+.+..++.... |.+|-+.+-.|.+++
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~gk--~~dklryIfs~is-ds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCGGK--IKDKLRYIFSLIS-DSRGIMQEIQRDQFL 171 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhccch--HHHHHHHHHHHHc-cchHHHHHHHHHHHH
Confidence 344678999999999999999988753222 2556777777766 666766666665554
No 219
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=25.73 E-value=1.5e+02 Score=18.78 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=18.4
Q ss_pred ccHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 039672 144 IDASELKRVLECLGLDKGWDMGEIEKMLK 172 (192)
Q Consensus 144 I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 172 (192)
|+.++++.+.+-....+ ++++++.+..
T Consensus 1 i~~~~v~~lA~La~L~l--~eee~~~~~~ 27 (93)
T TIGR00135 1 ISDEEVKHLAKLARLEL--SEEEAESFAG 27 (93)
T ss_pred CCHHHHHHHHHHhCCCC--CHHHHHHHHH
Confidence 46677777777777777 8777655433
No 220
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=24.83 E-value=4.2e+02 Score=22.29 Aligned_cols=81 Identities=16% Similarity=0.031 Sum_probs=51.7
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHH---HHhccc---CCCCCCCchhHHHHHhhcCCCCCCCCCCChHHHHHHHHHHHhc
Q 039672 65 EKNGKIKKERAKKVVEKLGLIYNED---EKSSFD---LPGTGLEDEVPVEEALGLGLGELDGEGCGRDELLRKAFKIFDE 138 (192)
Q Consensus 65 ~~~g~l~~~e~~~~l~~~~~~~~~~---~~~~~~---~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~ 138 (192)
...-.+....|+++|...-...+.- .+..-+ .++.|+--|...+.++. .....+.+-++..-.
T Consensus 186 g~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF-----------qPw~tllkNWq~Lav 254 (563)
T KOG1785|consen 186 GKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF-----------QPWKTLLKNWQTLAV 254 (563)
T ss_pred CCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh-----------ccHHHHHHhhhhhhc
Confidence 4566778888888887663322222 223323 78888777744444433 333455666777778
Q ss_pred cCCCc---ccHHHHHHHHHHh
Q 039672 139 DGNGY---IDASELKRVLECL 156 (192)
Q Consensus 139 ~~~G~---I~~~el~~~l~~~ 156 (192)
-+-|+ ++++|++.-|..+
T Consensus 255 tHPGYmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 255 THPGYMAFLTYDEVKARLQKY 275 (563)
T ss_pred cCCceeEEeeHHHHHHHHHHH
Confidence 88885 6899999988876
No 221
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=24.40 E-value=2e+02 Score=18.33 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=35.0
Q ss_pred cCCCcccHHHHHHHHHHh-CCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHh
Q 039672 139 DGNGYIDASELKRVLECL-GLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELM 190 (192)
Q Consensus 139 ~~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 190 (192)
...-.|.-.+|++.|... ++. +..+...+-..+|...|+.|+--||--+
T Consensus 18 g~r~IVPW~~F~~~L~~~h~~~---~~~~~~aLk~TiDlT~n~~iS~FeFdvF 67 (85)
T PF02761_consen 18 GKRTIVPWSEFRQALQKVHPIS---SGLEAMALKSTIDLTCNDYISNFEFDVF 67 (85)
T ss_dssp TT-SEEEHHHHHHHHHHHS--S---SHHHHHHHHHHH-TTSSSEEEHHHHHHH
T ss_pred CCCeEeeHHHHHHHHHHhcCCC---chHHHHHHHHHHhcccCCccchhhhHHH
Confidence 344679999999999985 444 3456677777889999999998887543
No 222
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=24.35 E-value=98 Score=19.92 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=10.3
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhh
Q 039672 149 LKRVLECLGLDKGWDMGEIEKMLKVV 174 (192)
Q Consensus 149 l~~~l~~~g~~~~~~~~~~~~~~~~~ 174 (192)
++.+|+.-|+.+ +.+++..++...
T Consensus 14 Lk~lLk~rGi~v--~~~~L~~f~~~i 37 (90)
T PF02337_consen 14 LKHLLKERGIRV--KKKDLINFLSFI 37 (90)
T ss_dssp HHHHHHCCT------HHHHHHHHHHH
T ss_pred HHHHHHHcCeee--cHHHHHHHHHHH
Confidence 444444445555 555555555544
No 223
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=23.55 E-value=1.8e+02 Score=18.43 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=20.5
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 039672 143 YIDASELKRVLECLGLDKGWDMGEIEKMLK 172 (192)
Q Consensus 143 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 172 (192)
.|+.++++.+.+-..+.+ ++++.+.+..
T Consensus 2 ~i~~e~i~~la~La~l~l--~~ee~~~~~~ 29 (95)
T PRK00034 2 AITREEVKHLAKLARLEL--SEEELEKFAG 29 (95)
T ss_pred CCCHHHHHHHHHHhCCCC--CHHHHHHHHH
Confidence 377888888888877777 8877655433
No 224
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=23.14 E-value=85 Score=17.74 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=19.2
Q ss_pred HHHHHHhccCCCcccHHHHHHHHH
Q 039672 131 KAFKIFDEDGNGYIDASELKRVLE 154 (192)
Q Consensus 131 ~~F~~~D~~~~G~I~~~el~~~l~ 154 (192)
.+|+.+...++|.+|..|+...+.
T Consensus 10 gI~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 10 GIPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp THHHHHHHHTTS-BEHHHHHHTST
T ss_pred CcHHHHHHcCCCCCCHHHHHHHcC
Confidence 478888778789999999988875
No 225
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=23.05 E-value=57 Score=28.68 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=32.6
Q ss_pred cchhhhhhHHHHHHHhhccCCCCCCccccccCChhh
Q 039672 4 ISGACSRLIGDLVQAIGVSRPRSSSSHNIVTNSTRE 39 (192)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (192)
+++++|..|++|++.++...|..+........++|.
T Consensus 531 ~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~ 566 (612)
T KOG0603|consen 531 FSECVSDEAKDLLQQLLQVDPALRLGADEIGAHPWF 566 (612)
T ss_pred cccccCHHHHHHHHHhccCChhhCcChhhhccCcch
Confidence 568899999999999999999999999888888877
No 226
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=23.05 E-value=36 Score=16.97 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=10.5
Q ss_pred HHHHhhcCCCCceeehH
Q 039672 169 KMLKVVDLNLDGKVDFC 185 (192)
Q Consensus 169 ~~~~~~d~~~~g~i~~~ 185 (192)
.++..-|.|+|-+|+.+
T Consensus 3 ~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIE 19 (30)
T ss_pred hHhhccccCCCcEEEEe
Confidence 45556677777776654
No 227
>PHA03155 hypothetical protein; Provisional
Probab=22.53 E-value=1.6e+02 Score=19.79 Aligned_cols=43 Identities=7% Similarity=-0.020 Sum_probs=33.2
Q ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHH
Q 039672 128 LLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKM 170 (192)
Q Consensus 128 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 170 (192)
.-+.+-.....+-.+.+|.+++..+|..+.+.++++.++....
T Consensus 62 A~~KIe~kVrk~~~~~vTk~q~~~al~~lt~RidvSmde~~~~ 104 (115)
T PHA03155 62 AEEKIRERVLKDLLPLVSKNQCMEAIADIKYRIDVSIDESQDL 104 (115)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHhcCeeeEEecccchhcc
Confidence 4566677777888899999999999999887776676665443
No 228
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=22.32 E-value=35 Score=22.05 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=8.7
Q ss_pred CCcccHHHHHHHHHHh
Q 039672 141 NGYIDASELKRVLECL 156 (192)
Q Consensus 141 ~G~I~~~el~~~l~~~ 156 (192)
||.++.+|...+...+
T Consensus 16 DG~v~~~E~~~i~~~l 31 (111)
T cd07176 16 DGDIDDAELQAIEALL 31 (111)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 4556666555555444
No 229
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=22.13 E-value=56 Score=26.99 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=29.8
Q ss_pred hhhhhHHHHHHHhhccCCCCCCccccccCChhhH
Q 039672 7 ACSRLIGDLVQAIGVSRPRSSSSHNIVTNSTREC 40 (192)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (192)
.++..++++++.+....|+.+.++..+..|+|..
T Consensus 264 ~is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~ 297 (382)
T KOG0032|consen 264 DISESAKDFIRKLLEFDPRKRLTAAQALQHPWIK 297 (382)
T ss_pred ccCHHHHHHHHHhcccCcccCCCHHHHhcCcccc
Confidence 4678899999999999999999999988888833
No 230
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=21.80 E-value=1.8e+02 Score=21.25 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.4
Q ss_pred ccCCCcccHHHHHHHHHHhCCC
Q 039672 138 EDGNGYIDASELKRVLECLGLD 159 (192)
Q Consensus 138 ~~~~G~I~~~el~~~l~~~g~~ 159 (192)
.||+|.+.+-=+..+|...|.+
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCCC
Confidence 6999999999999999998864
No 231
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=21.64 E-value=2e+02 Score=18.25 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 141 NGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 141 ~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
.|.+|.++...+-. .+. +.+....++...-.- |.-.|..|++++
T Consensus 32 ~gvlt~~~~~~I~~---~~t--~~~k~~~Lld~L~~R--G~~AF~~F~~aL 75 (90)
T cd08332 32 KDILTDSMAESIMA---KPT--SFSQNVALLNLLPKR--GPRAFSAFCEAL 75 (90)
T ss_pred cCCCCHHHHHHHHc---CCC--cHHHHHHHHHHHHHh--ChhHHHHHHHHH
Confidence 47888887776663 333 555566666555433 334788888776
No 232
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=21.54 E-value=1.6e+02 Score=18.24 Aligned_cols=43 Identities=30% Similarity=0.408 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCC-CceeehHHHHHhh
Q 039672 145 DASELKRVLECLGLDKGWDMGEIEKMLKVVDLNL-DGKVDFCEFELMM 191 (192)
Q Consensus 145 ~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~-~g~i~~~eF~~~~ 191 (192)
..+++...| .|.+. +.+.+...+...+.+. =+.++-++|++++
T Consensus 43 ~i~~le~~L--~G~~~--~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEAL--IGCPY--DREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHH--TTCBS--SHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCC--CHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 366677666 45566 8888888888886553 2467888887764
No 233
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=20.84 E-value=1.8e+02 Score=26.35 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHhccCCCcccHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCCCCceeehHHHHHhh
Q 039672 124 GRDELLRKAFKIFDEDGNGYIDASELKRVLECLGLDKGWDMGEIEKMLKVVDLNLDGKVDFCEFELMM 191 (192)
Q Consensus 124 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 191 (192)
......+.+|+..-+.+.-.+..+.+...+ .+++++..+..++...++.|+++.|...+
T Consensus 401 ~a~~aA~~iF~nv~~p~~~~i~ld~~~~f~---------~~E~a~~~~slfe~~~~~~Itrs~~~~~i 459 (714)
T KOG4629|consen 401 EAKIAARKIFKNVAKPGVILIDLDDLLRFM---------GDEEAERAFSLFEGASDENITRSSFKEWI 459 (714)
T ss_pred hHHHHHHHHHhccCCCCccchhhhhhhhcC---------CHHHHHHHHHhhhhhcccCccHHHHHHHH
Confidence 344567788999988887788887777665 78888888888877666669999887653
No 234
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=20.81 E-value=2.1e+02 Score=18.58 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Q 039672 143 YIDASELKRVLECLGLDKGWDMGEIEKMLKV 173 (192)
Q Consensus 143 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 173 (192)
.|+.++++.+.+-.-..+ ++++.+.+...
T Consensus 2 ~i~~e~v~~la~LarL~l--seee~e~~~~~ 30 (96)
T COG0721 2 AIDREEVKHLAKLARLEL--SEEELEKFATQ 30 (96)
T ss_pred ccCHHHHHHHHHHhhccc--CHHHHHHHHHH
Confidence 578888888887777776 88877654433
No 235
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=20.63 E-value=1.6e+02 Score=16.09 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHhCCCCCCCHHHH
Q 039672 145 DASELKRVLECLGLDKGWDMGEI 167 (192)
Q Consensus 145 ~~~el~~~l~~~g~~~~~~~~~~ 167 (192)
+.+++..+.+..|+.+ |.+++
T Consensus 28 ~~~e~~~lA~~~Gy~f--t~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDF--TEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCC--CHHHh
Confidence 6788888888889888 87765
No 236
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=20.42 E-value=3e+02 Score=25.65 Aligned_cols=122 Identities=10% Similarity=0.075 Sum_probs=67.7
Q ss_pred hcCCCCCcccHHHHHHHHHHhCCCCCHHHH--hccc----CCCCCCCch-hHHHHHhhcCCCCCCCCCCChHHHHHHHHH
Q 039672 62 FGMEKNGKIKKERAKKVVEKLGLIYNEDEK--SSFD----LPGTGLEDE-VPVEEALGLGLGELDGEGCGRDELLRKAFK 134 (192)
Q Consensus 62 ~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~--~~~~----~~g~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 134 (192)
.|...-..|+..+++.+|...++..+.... +++. ..+.++|++ ..+....+.. ... .........|-
T Consensus 153 vd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs--~~~----a~l~e~~~~~~ 226 (1267)
T KOG1264|consen 153 VDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFS--QQK----AILLEFKKDFI 226 (1267)
T ss_pred ccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHHhhc--cch----hhhhcccchhh
Confidence 354455668899999998877776554422 2222 789999999 6666555531 000 01111112222
Q ss_pred HH--hccCCCcccHHHHHHHHHHhCCCCCCCHH---HHHHHHHhhcCC-----CCceeehHHHHHhh
Q 039672 135 IF--DEDGNGYIDASELKRVLECLGLDKGWDMG---EIEKMLKVVDLN-----LDGKVDFCEFELMM 191 (192)
Q Consensus 135 ~~--D~~~~G~I~~~el~~~l~~~g~~~~~~~~---~~~~~~~~~d~~-----~~g~i~~~eF~~~~ 191 (192)
.- |...--.|+..||++.|..-.... ... .+..++..+-.| ....+.+.||+.++
T Consensus 227 ~~~~~~~d~~vV~~~ef~rFL~~~Q~e~--~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fL 291 (1267)
T KOG1264|consen 227 LGNTDRPDASVVYLQEFQRFLIHEQQEH--WASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFL 291 (1267)
T ss_pred hcCCCCccceEeeHHHHHHHHHhhhHHH--hhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHH
Confidence 21 122225799999999997643222 111 234444444222 23458899998775
Done!