BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039676
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P17432|MASY_GOSHI Malate synthase, glyoxysomal OS=Gossypium hirsutum PE=2 SV=1
Length = 567
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/102 (79%), Positives = 92/102 (90%), Gaps = 2/102 (1%)
Query: 1 MVGLGTYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNR 60
M+GLG+YGY AP+ +KKI+A YDVP+GV+IRGR+ EEFAKIL KDALQFVADLQREFRN
Sbjct: 1 MIGLGSYGYTAPS-SKKINA-YDVPQGVDIRGRFDEEFAKILTKDALQFVADLQREFRNH 58
Query: 61 LKYAMECRREAKRRYNEGALPGFDAATRYIREGEWTCALVPP 102
+KYAMECR+EAKRRYNEGALPGFD ATRYIREG+WTC PP
Sbjct: 59 IKYAMECRKEAKRRYNEGALPGFDPATRYIREGKWTCVPFPP 100
>sp|P45458|MASY_SOYBN Malate synthase, glyoxysomal (Fragment) OS=Glycine max PE=2 SV=1
Length = 564
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/98 (75%), Positives = 83/98 (84%), Gaps = 1/98 (1%)
Query: 5 GTYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYA 64
GTYGY P + KKI ++YDVPEGV+IRGRY EFAKIL KDAL+FVADLQREFRN +KYA
Sbjct: 1 GTYGYPTPAV-KKIESYYDVPEGVDIRGRYDAEFAKILTKDALKFVADLQREFRNHIKYA 59
Query: 65 MECRREAKRRYNEGALPGFDAATRYIREGEWTCALVPP 102
+ECRREAK++YNEGALP FD AT YIRE EW CA VPP
Sbjct: 60 LECRREAKKKYNEGALPEFDPATTYIREQEWVCAPVPP 97
>sp|P24571|MASY_CUCMA Malate synthase, glyoxysomal OS=Cucurbita maxima PE=1 SV=1
Length = 566
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/100 (72%), Positives = 84/100 (84%), Gaps = 1/100 (1%)
Query: 4 LGTYG-YAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLK 62
+G+ G Y+ + KK S YDVPEGV+IRGRY EEFA+ILNK+AL FVADLQR FRN ++
Sbjct: 1 MGSLGMYSESAVRKKSSRGYDVPEGVDIRGRYDEEFARILNKEALLFVADLQRTFRNHIR 60
Query: 63 YAMECRREAKRRYNEGALPGFDAATRYIREGEWTCALVPP 102
Y+MECRREAKRRYNEGA+PGFD AT+YIRE EWTCA VPP
Sbjct: 61 YSMECRREAKRRYNEGAVPGFDPATKYIRESEWTCASVPP 100
>sp|P08216|MASY_CUCSA Malate synthase, glyoxysomal OS=Cucumis sativus PE=2 SV=2
Length = 568
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 85/101 (84%), Gaps = 2/101 (1%)
Query: 4 LGTYG-YAAPTMTKKISAH-YDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRL 61
+G+ G Y+ +TKK S+ YDVPEGV+IRGRY EEFAKILNK+AL F+ADLQR FRN +
Sbjct: 1 MGSLGMYSESGLTKKGSSRGYDVPEGVDIRGRYDEEFAKILNKEALLFIADLQRTFRNHI 60
Query: 62 KYAMECRREAKRRYNEGALPGFDAATRYIREGEWTCALVPP 102
KY+MECRREAKRRYNEG LPGFD AT+YIR+ EWTCA VPP
Sbjct: 61 KYSMECRREAKRRYNEGGLPGFDPATKYIRDSEWTCAPVPP 101
>sp|P17815|MASY_RICCO Malate synthase, glyoxysomal OS=Ricinus communis PE=2 SV=1
Length = 567
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/98 (75%), Positives = 83/98 (84%), Gaps = 3/98 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAM 65
TYG +AP KK A YDVPEGV+IRGRY EFAKIL +DALQFVADLQREFRNR++YA+
Sbjct: 5 TYGDSAPI--KKTGAGYDVPEGVDIRGRYDGEFAKILTRDALQFVADLQREFRNRIRYAI 62
Query: 66 ECRREAKRRYNEGALPGFDA-ATRYIREGEWTCALVPP 102
ECR+EAK RYN GALPGF+ AT+YIREGEWTCA VPP
Sbjct: 63 ECRKEAKSRYNAGALPGFEHPATKYIREGEWTCAPVPP 100
>sp|P13244|MASY_BRANA Malate synthase, glyoxysomal OS=Brassica napus PE=2 SV=1
Length = 561
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 70/83 (84%)
Query: 20 AHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGA 79
A YD P+GVE+RGRY + FAKIL +DAL FVA+LQREFR ++YAMECRRE KRRYN GA
Sbjct: 13 AVYDSPDGVEVRGRYDQVFAKILTRDALGFVAELQREFRGHVRYAMECRREVKRRYNSGA 72
Query: 80 LPGFDAATRYIREGEWTCALVPP 102
+PGFD +T++IR+GEW CA VPP
Sbjct: 73 VPGFDPSTKFIRDGEWVCASVPP 95
>sp|P49081|MASY_MAIZE Malate synthase, glyoxysomal OS=Zea mays GN=LIP PE=2 SV=1
Length = 559
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 64/81 (79%)
Query: 22 YDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALP 81
YD PEGV++RGRY EFA IL +DAL FVA LQREFR ++YAME RREA+RRY+ G LP
Sbjct: 10 YDAPEGVDVRGRYDREFAGILTRDALDFVAGLQREFRGAVRYAMEQRREAQRRYDAGELP 69
Query: 82 GFDAATRYIREGEWTCALVPP 102
FD AT +REG+WTCA VPP
Sbjct: 70 RFDPATTLVREGDWTCASVPP 90
>sp|Q43827|MASY_RAPSA Malate synthase, glyoxysomal OS=Raphanus sativus GN=MLS PE=2 SV=1
Length = 566
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 19 SAHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFR-NRLKYAMECRREAKRRYNE 77
+A YD P+GVE+RGRY + FAKIL ++AL FVA+LQR+ L+YA
Sbjct: 12 AAVYDSPDGVEVRGRYDQVFAKILTREALGFVAELQRDVSLGMLRYAWSAVERQNVVTTF 71
Query: 78 GALPGFDAATRYIREGEWTCALVPPP 103
G GEW C++ PP
Sbjct: 72 VLSLGLTLPLSSSEIGEWVCSVCSPP 97
>sp|P95329|MASY_MYXXD Malate synthase OS=Myxococcus xanthus (strain DK 1622) GN=mls PE=3
SV=2
Length = 541
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 27 GVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAA 86
GV ++G + ++A++L +AL+FVA L R F R +E R+ + +++GA P F
Sbjct: 16 GVVVKGTWHPDYAEVLTPEALEFVAKLARNFGERRLALLERRKTVQAAWSKGARPHFLPE 75
Query: 87 TRYIREGEWTCALVP 101
T+ +REG+WT A +P
Sbjct: 76 TKAVREGDWTVAPLP 90
>sp|Q02216|MASY_CANTR Malate synthase, glyoxysomal OS=Candida tropicalis GN=PMS1 PE=3
SV=1
Length = 551
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 23 DVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPG 82
D +GV+I G +E I N++ L FVA L R F R + + R+E ++ ++G LP
Sbjct: 10 DKVKGVQILGPIPDEAKHIFNQETLAFVATLHRGFEARRQELLNNRKEQQKLRDQGFLPD 69
Query: 83 FDAATRYIR-EGEWTCALVPP 102
F T YIR + WT + P
Sbjct: 70 FLPETEYIRNDSTWTGPALAP 90
>sp|Q8T2K9|MASY_DICDI Malate synthase OS=Dictyostelium discoideum GN=masA PE=2 SV=2
Length = 543
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 27 GVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGF--D 84
G+EIRG+ + IL ++ L F+ +L+R F K ++ R + + N G LP F D
Sbjct: 4 GIEIRGKVDKNVKSILTEECLTFLGELERRFGGIRKNLLQKRLDRQIDINNGILPSFLKD 63
Query: 85 AATRYIREGEWTCALVP 101
+ + + W C+ VP
Sbjct: 64 SDCKRATDKNWKCSSVP 80
>sp|P28345|MASY_NEUCR Malate synthase, glyoxysomal OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=acu-9 PE=3 SV=2
Length = 542
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 26 EGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDA 85
+GV I G E KIL AL FVA L R F K +E R+ + + G LP F
Sbjct: 9 QGVTISGPIEEHQRKILTPQALSFVALLHRSFNQTRKNLLERRQLRQAEIDRGVLPDFLP 68
Query: 86 ATRYIREG-EWTCALVPP 102
T++IRE W A PP
Sbjct: 69 ETKHIRENPTWKGA--PP 84
>sp|P21360|MASY_PICAN Malate synthase, glyoxysomal OS=Pichia angusta GN=MAS PE=1 SV=1
Length = 555
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 41 ILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREG-EWTCAL 99
IL KDAL+F+ L R F K +E R++ + R + G F T+YIRE W C
Sbjct: 32 ILTKDALKFIVLLHRSFNETRKQLLENRQKVQERLDAGESLHFLEETKYIREDPNWKCLP 91
Query: 100 VPP 102
P
Sbjct: 92 THP 94
>sp|P28344|MASY_EMENI Malate synthase, glyoxysomal OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=acuE
PE=3 SV=3
Length = 539
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 28 VEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAAT 87
V I G S E KIL K+A F+A L R F K ++ R + + ++G LP F T
Sbjct: 11 VAILGSVSNEARKILTKEACAFLAILHRTFNPTRKALLQRRVDRQAEIDKGHLPDFLPET 70
Query: 88 RYIREG-EWTCALVPP 102
++IR+ W A PP
Sbjct: 71 KHIRDDPSWKGA--PP 84
>sp|P08997|MASY_ECOLI Malate synthase A OS=Escherichia coli (strain K12) GN=aceB PE=1
SV=1
Length = 533
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 34 YSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREG 93
Y E+ +IL +A++F+ +L F + + R + ++ + G LP F + T IR+
Sbjct: 17 YGEQEKQILTAEAVEFLTELVTHFTPQRNKLLAARIQQQQDIDNGTLPDFISETASIRDA 76
Query: 94 EWTCALVP 101
+W +P
Sbjct: 77 DWKIRGIP 84
>sp|P30952|MASY_YEAST Malate synthase 1, glyoxysomal OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MLS1 PE=1 SV=1
Length = 554
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 35 SEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGA 79
S IL KDAL+F+ L R F N+ K +E R+ +++ + G+
Sbjct: 25 STTVGDILTKDALEFIVLLHRTFNNKRKQLLENRQVVQKKLDSGS 69
>sp|A6ZRW6|MASY_YEAS7 Malate synthase 1, glyoxysomal OS=Saccharomyces cerevisiae
(strain YJM789) GN=MLS1 PE=3 SV=1
Length = 554
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 35 SEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGA 79
S IL KDAL+F+ L R F N+ K +E R+ +++ + G+
Sbjct: 25 STTVGDILTKDALEFIVLLHRTFNNKRKQLLENRQVVQKKLDSGS 69
>sp|Q10663|GCP_CAEEL Bifunctional glyoxylate cycle protein OS=Caenorhabditis elegans
GN=gei-7 PE=1 SV=2
Length = 968
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 40 KILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGA-LPGFDAATRYIREGE-WTC 97
KIL DAL+F+ DL EF R + R + + N P F+ T +R + W
Sbjct: 455 KILTPDALRFLHDLNTEFNPRRLRLLSKRNQVQADINNSLWFPDFNKETEVLRSDQGWKG 514
Query: 98 ALVP 101
A +P
Sbjct: 515 AEIP 518
>sp|P03736|VMTH_LAMBD Tail tape measure protein H OS=Enterobacteria phage lambda GN=H
PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 1 MVGLGTYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRN- 59
+V G G A + A + GVE+ + +E F K L D + + R+F N
Sbjct: 191 LVKAGVSGEAQIASISQSVARFSSASGVEV-DKVAEAFGK-LTTDPTSGLTAMARQFHNV 248
Query: 60 ---RLKYAMECRRE-----AKRRYNEGALPGFDAATRYIRE 92
++ Y + +R A + NE A GFD TR ++E
Sbjct: 249 SAEQIAYVAQLQRSGDEAGALQAANEAATKGFDDQTRRLKE 289
>sp|Q3SH79|GLGA_THIDA Glycogen synthase OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=glgA PE=3 SV=2
Length = 493
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 17 KISAHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQRE--FRNRLKYAMECRREAKRR 74
++ AH+ EGVE G +S A I+ DA+ V+ E Y ++ ++R
Sbjct: 185 QLPAHWWSHEGVEFHGGFSMLKAGIVYADAVTTVSPTYAEEICTPAFGYGLDGLLRSRRH 244
Query: 75 YNEGALPGFDAAT 87
G L G D+AT
Sbjct: 245 KLHGILNGIDSAT 257
>sp|Q1GP96|EFG_SPHAL Elongation factor G OS=Sphingopyxis alaskensis (strain DSM 13593 /
LMG 18877 / RB2256) GN=fusA PE=3 SV=1
Length = 697
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 50 VADLQREFRNRL-KYAMECRREAKRRYNEGALPGFDAATRYIREGEWTCALVP 101
+AD E+R +L + A+E EA Y EG +P + IR+G A VP
Sbjct: 211 LADKAAEYREKLVELAVEQDDEAMEAYLEGNVPDVATLKKLIRKGTLNQAFVP 263
>sp|Q06FQ4|NU4C_PELHO NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
OS=Pelargonium hortorum GN=ndhD PE=3 SV=2
Length = 500
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 MVGLGTYGYAAPTMTKKISAHYDVPEGVEI 30
++G+G YG PT +ISAH P +EI
Sbjct: 182 VLGIGLYGSNEPTFNFEISAHRSYPAALEI 211
>sp|Q8DS35|RS13_STRMU 30S ribosomal protein S13 OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rpsM PE=3 SV=1
Length = 121
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG PT +KKI A V E + ++ S++ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLPT-SKKILAAAGVSEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
>sp|Q09439|YP79_CAEEL Uncharacterized protein B0228.9 OS=Caenorhabditis elegans
GN=B0228.9 PE=4 SV=2
Length = 443
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 17 KISAHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYN 76
K+S+ +P+GV+ + EEF + DA+ V D Q+ +N M R R+Y+
Sbjct: 168 KLSSGLFLPDGVDQTLQNFEEFGDWITDDAIIVVCDEQKMDKNEFIKYMSTRYHHIRKYS 227
>sp|P13484|TAGE_BACSU Probable poly(glycerol-phosphate) alpha-glucosyltransferase
OS=Bacillus subtilis (strain 168) GN=tagE PE=1 SV=1
Length = 673
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 29 EIRGRYSEEFAKILNKDALQFVADLQRE 56
+I+GRY E F+++ N DA+ F+ + Q E
Sbjct: 286 QIKGRYKEVFSQMYNLDAVFFITEEQLE 313
>sp|A5W968|GLUQ_PSEP1 Glutamyl-Q tRNA(Asp) synthetase OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=gluQ PE=3 SV=1
Length = 300
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 49 FVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREG 93
+ A + R F L YA C R+ RYN G PGF + REG
Sbjct: 90 YAAVVDRLFNMGLAYACTCSRKQLERYN-GIYPGFCRNAGHAREG 133
>sp|P21826|MASZ_YEAST Malate synthase 2, glyoxysomal OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DAL7 PE=1 SV=2
Length = 554
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 39 AKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALP-GFDAATRYIREGEWTC 97
A IL KDAL+F+ L R F + K + R + + + G F T IR
Sbjct: 29 ADILTKDALEFIVLLHRTFNSTRKQLLANRSNLQSKLDSGEYRFDFLPETEQIRNDPTWQ 88
Query: 98 ALVPPP 103
+P P
Sbjct: 89 GAIPAP 94
>sp|A3CK88|RS13_STRSV 30S ribosomal protein S13 OS=Streptococcus sanguinis (strain
SK36) GN=rpsM PE=3 SV=1
Length = 121
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG PT +KKI A V E + ++ E+ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLPT-SKKILAAAGVSEDIRVKDLTIEQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
>sp|B9DPG0|SUCC_STACT Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus
carnosus (strain TM300) GN=sucC PE=3 SV=1
Length = 388
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 8 GYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNKDALQFVAD 52
YA + K++ H PEG E++ Y EE A I + + FV D
Sbjct: 71 AYANELLGKQLVTHQTGPEGKEVKRLYIEEGADIKKEYYVGFVID 115
>sp|A6T5L4|LAMB1_KLEP7 Maltoporin 1 OS=Klebsiella pneumoniae subsp. pneumoniae (strain
ATCC 700721 / MGH 78578) GN=lamB1 PE=3 SV=1
Length = 423
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 9 YAAPTMTKKISAH---YDVPEGVEIRGRYSEEFAKILNKDALQF 49
YA P TKK ++ YD GV + G S++ NK LQ+
Sbjct: 218 YAMPNTTKKQDSYGGLYDADNGVMLTGEISQDMLGGYNKTVLQY 261
>sp|Q6CL13|BBP1_KLULA Spindle pole component BBP1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=BBP1 PE=3 SV=1
Length = 398
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 34 YSEEFAKILNKDAL--QFVADLQREFRNRLKYAMECRREAKRRY 75
Y+ E+ K+++K +L + + DL+ + R R K+ ME E K++Y
Sbjct: 193 YTPEYVKLMDKLSLNNKELRDLKVDVRERQKHGMEKETELKKKY 236
>sp|C1CIC1|RS13_STRZP 30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain
P1031) GN=rpsM PE=3 SV=1
Length = 121
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG T +KKI A + E V +R S++ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLAT-SKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
>sp|C1CC30|RS13_STRZJ 30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain
JJA) GN=rpsM PE=3 SV=1
Length = 121
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG T +KKI A + E V +R S++ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLAT-SKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
>sp|P66393|RS13_STRR6 30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain
ATCC BAA-255 / R6) GN=rpsM PE=3 SV=1
Length = 121
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG T +KKI A + E V +R S++ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLAT-SKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
>sp|B2IS65|RS13_STRPS 30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain
CGSP14) GN=rpsM PE=3 SV=1
Length = 121
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG T +KKI A + E V +R S++ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLAT-SKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
>sp|P66392|RS13_STRPN 30S ribosomal protein S13 OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=rpsM PE=3 SV=1
Length = 121
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG T +KKI A + E V +R S++ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLAT-SKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
>sp|B8ZKQ3|RS13_STRPJ 30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain
ATCC 700669 / Spain 23F-1) GN=rpsM PE=3 SV=1
Length = 121
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG T +KKI A + E V +R S++ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLAT-SKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
>sp|B1I8M2|RS13_STRPI 30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=rpsM PE=3 SV=1
Length = 121
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG T +KKI A + E V +R S++ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLAT-SKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
>sp|C1CAN6|RS13_STRP7 30S ribosomal protein S13 OS=Streptococcus pneumoniae (strain
70585) GN=rpsM PE=3 SV=1
Length = 121
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG T +KKI A + E V +R S++ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLAT-SKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
>sp|Q04ML3|RS13_STRP2 30S ribosomal protein S13 OS=Streptococcus pneumoniae serotype 2
(strain D39 / NCTC 7466) GN=rpsM PE=3 SV=1
Length = 121
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG T +KKI A + E V +R S++ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLAT-SKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
>sp|Q97JB1|COBB_CLOAB Cobyrinic acid A,C-diamide synthase OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=cobB PE=3 SV=1
Length = 437
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 4 LGTYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKY 63
LG Y +P KK+ + D + I G Y E F KDAL D+ E +N+L+
Sbjct: 264 LGEVTYFSPLKDKKLPENIDF---LYIGGGYPEIF-----KDALSENKDMLLEIKNKLED 315
Query: 64 AMECRRE 70
C E
Sbjct: 316 GTRCYAE 322
>sp|A8AZK1|RS13_STRGC 30S ribosomal protein S13 OS=Streptococcus gordonii (strain
Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpsM PE=3
SV=1
Length = 121
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 6 TYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNK-DALQFVADLQREFRNRLKYA 64
YG PT +KKI A V E V ++ ++ I + DA++ DL+RE +K
Sbjct: 22 VYGIGLPT-SKKILAAAGVSEDVRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRL 80
Query: 65 MEC 67
ME
Sbjct: 81 MEI 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,111,539
Number of Sequences: 539616
Number of extensions: 1416954
Number of successful extensions: 3843
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3818
Number of HSP's gapped (non-prelim): 63
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)