Query 039676
Match_columns 103
No_of_seqs 104 out of 459
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 12:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02626 malate synthase 99.9 1.6E-27 3.6E-32 201.6 9.4 86 18-103 2-87 (551)
2 PRK09255 malate synthase; Vali 99.9 2.6E-26 5.7E-31 194.0 8.8 81 23-103 4-84 (531)
3 TIGR01344 malate_syn_A malate 99.9 2.6E-23 5.7E-28 175.2 7.1 63 41-103 1-63 (511)
4 cd00727 malate_synt_A Malate s 99.9 2.8E-23 6.1E-28 175.0 7.1 63 41-103 1-63 (511)
5 KOG1261 Malate synthase [Energ 99.8 6.4E-21 1.4E-25 158.1 7.5 84 20-103 10-95 (552)
6 PF01274 Malate_synthase: Mala 99.7 8.1E-19 1.8E-23 148.5 -2.9 74 30-103 3-77 (526)
7 cd00480 malate_synt Malate syn 99.7 1.5E-16 3.4E-21 134.2 6.5 58 46-103 1-60 (511)
8 COG2225 AceB Malate synthase [ 99.5 3.2E-14 6.9E-19 120.9 4.0 76 27-103 14-91 (545)
9 PF13260 DUF4051: Protein of u 88.0 0.99 2.2E-05 28.0 3.6 28 50-77 22-49 (54)
10 PRK11546 zraP zinc resistance 69.0 23 0.0005 26.0 6.1 44 38-82 40-87 (143)
11 cd00728 malate_synt_G Malate s 68.1 4.9 0.00011 36.3 2.8 28 50-77 31-58 (712)
12 PRK02999 malate synthase G; Pr 67.7 4.8 0.0001 36.4 2.7 27 50-76 39-65 (726)
13 PF08598 Sds3: Sds3-like; Int 66.5 14 0.0003 27.2 4.6 48 44-91 1-52 (205)
14 TIGR01345 malate_syn_G malate 66.3 5.4 0.00012 36.1 2.7 28 49-76 36-63 (721)
15 PRK08271 anaerobic ribonucleos 44.2 39 0.00085 30.1 4.4 38 46-83 368-405 (623)
16 PF08690 GET2: GET complex sub 39.2 30 0.00065 28.0 2.7 17 60-78 6-22 (302)
17 PF01969 DUF111: Protein of un 38.0 11 0.00023 31.5 0.0 59 2-62 152-212 (382)
18 cd08333 DED_Caspase_8_repeat1 31.8 47 0.001 21.9 2.3 27 38-66 48-74 (82)
19 TIGR02453 conserved hypothetic 27.2 97 0.0021 23.7 3.7 14 42-55 1-14 (217)
20 COG0279 GmhA Phosphoheptose is 26.9 25 0.00055 26.8 0.4 21 44-64 54-74 (176)
21 COG1507 Uncharacterized conser 25.6 59 0.0013 24.5 2.1 35 45-83 84-118 (167)
22 PTZ00008 (NAP-S) nucleosome as 25.5 1.3E+02 0.0027 22.6 4.0 35 44-83 5-39 (185)
23 PF11444 DUF2895: Protein of u 25.5 62 0.0013 25.0 2.3 56 37-98 91-148 (199)
24 PF09365 DUF2461: Conserved hy 25.3 87 0.0019 23.8 3.1 13 43-55 1-13 (212)
25 COG2187 Uncharacterized protei 24.0 1.4E+02 0.003 25.0 4.2 33 38-70 173-205 (337)
26 PF06037 DUF922: Bacterial pro 23.6 1.6E+02 0.0034 21.5 4.1 29 51-79 121-149 (161)
27 cd08334 DED_Caspase_8_10_repea 23.0 1.2E+02 0.0027 19.8 3.1 27 38-67 51-77 (83)
28 PF11690 DUF3287: Protein of u 23.0 2.7E+02 0.0059 19.6 5.0 28 44-71 38-68 (109)
29 KOG4017 DNA excision repair pr 22.7 1.4E+02 0.003 24.3 3.8 20 79-99 243-262 (274)
30 PF13925 Katanin_con80: con80 22.6 1.9E+02 0.0041 20.8 4.4 23 45-67 88-110 (164)
31 PRK04194 hypothetical protein; 22.5 44 0.00096 28.1 1.1 56 2-59 153-208 (392)
32 PRK07571 bidirectional hydroge 22.0 1.2E+02 0.0027 22.4 3.3 41 39-81 13-53 (169)
33 COG3388 Predicted transcriptio 21.8 2.2E+02 0.0048 19.9 4.3 27 36-62 61-87 (101)
34 TIGR02683 upstrm_HI1419 probab 21.5 2E+02 0.0043 18.7 4.0 22 40-61 3-25 (95)
35 PF11629 Mst1_SARAH: C termina 21.5 1.7E+02 0.0037 17.9 3.2 26 42-67 20-45 (49)
36 TIGR00053 addiction module tox 21.4 1.7E+02 0.0037 18.5 3.5 30 38-67 2-34 (89)
37 KOG2656 DNA methyltransferase 21.0 1.7E+02 0.0037 25.3 4.2 36 48-84 229-266 (445)
No 1
>PLN02626 malate synthase
Probab=99.94 E-value=1.6e-27 Score=201.64 Aligned_cols=86 Identities=70% Similarity=1.201 Sum_probs=82.4
Q ss_pred ccccccCCcceEEeccCChHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCcee
Q 039676 18 ISAHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREGEWTC 97 (103)
Q Consensus 18 ~~~~~~~~~gv~i~~~~~~~~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdFl~eT~~IR~~~W~v 97 (103)
|.+.+..+.||+|.++..+.|++|||||||+||++||++|++||++||++|++||++||+|++|||+|+|++||+++|+|
T Consensus 2 ~~~~~~~~~~~~i~~~~~~~~~~ilt~~al~Fl~~Lh~~F~~rr~~LL~~R~~~q~~~~~g~~p~Fl~et~~iR~~~W~v 81 (551)
T PLN02626 2 KVEAYDAPVGVRIRGPYDAEFAKILTRDALQFVADLQREFRPRRKYLLECRREAQRRYDAGALPGFDPATRAVREGDWRC 81 (551)
T ss_pred CCcccCCCCceEEecCCChhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCchhccCCCCCee
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 039676 98 ALVPPP 103 (103)
Q Consensus 98 ap~P~~ 103 (103)
+|+|++
T Consensus 82 a~~p~~ 87 (551)
T PLN02626 82 APVPPA 87 (551)
T ss_pred CCCChh
Confidence 999985
No 2
>PRK09255 malate synthase; Validated
Probab=99.93 E-value=2.6e-26 Score=193.99 Aligned_cols=81 Identities=36% Similarity=0.674 Sum_probs=77.9
Q ss_pred cCCcceEEeccCChHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCceecCCCC
Q 039676 23 DVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREGEWTCALVPP 102 (103)
Q Consensus 23 ~~~~gv~i~~~~~~~~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdFl~eT~~IR~~~W~vap~P~ 102 (103)
..+.||+|.++..+.+++|||||||+||++||++|++||++||++|++||++||+|++|||+++|++||+++|+|+|+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~ilt~~al~fl~~L~~~F~~rr~~Ll~~R~~~q~~~~~g~~p~fl~~t~~iR~~~W~va~~p~ 83 (531)
T PRK09255 4 TTPQGLAITGPPGPGYEEILTPEALAFLAELHRRFEPRRRELLAARAERQARIDAGELPDFLPETASIREGDWKVAPIPA 83 (531)
T ss_pred CCCCceEEccCCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCccchhcCCCCCeeCCCCh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 039676 103 P 103 (103)
Q Consensus 103 ~ 103 (103)
+
T Consensus 84 ~ 84 (531)
T PRK09255 84 D 84 (531)
T ss_pred h
Confidence 5
No 3
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=99.88 E-value=2.6e-23 Score=175.23 Aligned_cols=63 Identities=37% Similarity=0.638 Sum_probs=61.8
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCceecCCCCC
Q 039676 41 ILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREGEWTCALVPPP 103 (103)
Q Consensus 41 ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdFl~eT~~IR~~~W~vap~P~~ 103 (103)
|||||||+||++||++|++||++||++|+++|+++|+|++|||+|+|++||+++|+|+|+|++
T Consensus 1 ilt~~al~fl~~L~~~F~~~r~~ll~~R~~~q~~~~~g~~~~f~~~t~~ir~~~W~va~~p~~ 63 (511)
T TIGR01344 1 VLTPEALEFLALLHRRFNPRRDQLLARRSNRQAKIDSGYLPDFLPETAQIREDDWTIAPIPPD 63 (511)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchhhcCCCCCccCCCChh
Confidence 799999999999999999999999999999999999999999999999999999999999985
No 4
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=99.88 E-value=2.8e-23 Score=175.03 Aligned_cols=63 Identities=43% Similarity=0.773 Sum_probs=61.7
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCceecCCCCC
Q 039676 41 ILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREGEWTCALVPPP 103 (103)
Q Consensus 41 ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdFl~eT~~IR~~~W~vap~P~~ 103 (103)
|||||||+||++||++|++||++||++|++||++||+|++|||+|||++||+++|+|+|+|++
T Consensus 1 ilt~~al~fl~~L~~~F~~~r~~ll~~R~~~q~~~~~g~~p~f~~~t~~ir~~~W~va~~p~~ 63 (511)
T cd00727 1 ILTPEALDFLAELHRRFNPRRKELLAARKERQARLDAGELPDFLPETAHIRDGDWKVAPVPPD 63 (511)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchhhcCCCCCccCCCChh
Confidence 799999999999999999999999999999999999999999999999999999999999985
No 5
>KOG1261 consensus Malate synthase [Energy production and conversion]
Probab=99.83 E-value=6.4e-21 Score=158.10 Aligned_cols=84 Identities=42% Similarity=0.672 Sum_probs=79.6
Q ss_pred ccccCCcceEEeccCChHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCcccccccCCC-cee
Q 039676 20 AHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYN-EGALPGFDAATRYIREGE-WTC 97 (103)
Q Consensus 20 ~~~~~~~gv~i~~~~~~~~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id-~G~lPdFl~eT~~IR~~~-W~v 97 (103)
.+++.++|+.+.|+.+..+.+|||+|||+||.+||+.|+++|++||++|.+.|++|+ .|..|||+|||+.||+|+ |++
T Consensus 10 ~~~~~~d~~~v~g~~d~~~akILT~dAL~Fi~~L~reFn~~rk~ll~~R~~vq~~~n~s~~~pdF~peT~~iR~D~~W~g 89 (552)
T KOG1261|consen 10 ALLTDPDGVPVFGPSDTTVAKILTKDALEFIVLLHREFNPRRKQLLENRNEVQRKLNSSGYFPDFLPETEVIRNDPTWQG 89 (552)
T ss_pred eeeeCCCCCccCCcccchHHHhcCHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHhhccccccCCCCchhhhcccCCCCcC
Confidence 457888999999999999999999999999999999999999999999999999999 678999999999999997 999
Q ss_pred cCCCCC
Q 039676 98 ALVPPP 103 (103)
Q Consensus 98 ap~P~~ 103 (103)
+.+||+
T Consensus 90 a~ipp~ 95 (552)
T KOG1261|consen 90 AIIPPG 95 (552)
T ss_pred CcCCch
Confidence 999985
No 6
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=99.69 E-value=8.1e-19 Score=148.55 Aligned_cols=74 Identities=38% Similarity=0.671 Sum_probs=63.6
Q ss_pred EeccCChHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCC-CceecCCCCC
Q 039676 30 IRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREG-EWTCALVPPP 103 (103)
Q Consensus 30 i~~~~~~~~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdFl~eT~~IR~~-~W~vap~P~~ 103 (103)
|.++....+.+|||++|++||++||++|+++|++||++|+++|++||+|.+|+|+++|.+||++ +|+|+++|++
T Consensus 3 f~~~~~~~~~~Ilt~~al~fL~~L~~~F~~~~~~LL~~R~~~q~~id~g~~~~Fl~et~~ir~d~~w~va~lp~~ 77 (526)
T PF01274_consen 3 FVGEEVLPYTEILTPEALAFLAELHREFAPRRRELLAARRERQAEIDAGHLPDFLPETGYIREDGDWFVAPLPPD 77 (526)
T ss_dssp HHHHHTCCCCTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTSSH-CSS---S-EEEE
T ss_pred ccCCCCCCcCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcCCCcCCcccccceeeCCCccCCCCChh
Confidence 4566677889999999999999999999999999999999999999999999999999999955 6999988763
No 7
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=99.65 E-value=1.5e-16 Score=134.23 Aligned_cols=58 Identities=45% Similarity=0.796 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCcccccc-cCCCceecCCCCC
Q 039676 46 ALQFVADLQREFRNRLKYAMECRREAKRRYNEGA-LPGFDAATRYI-REGEWTCALVPPP 103 (103)
Q Consensus 46 AL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~-lPdFl~eT~~I-R~~~W~vap~P~~ 103 (103)
|++||++||++|++||++||++|+++|++||+|. +|+|+++|.+| |+++|+|+|+|++
T Consensus 1 a~~fl~~L~~~f~~~~~~LL~~R~~~q~~~d~g~~~~~Fl~~t~~i~~~~~w~v~~~p~~ 60 (511)
T cd00480 1 ALAFVAELHREFNPRRRELLAARDERQARLDAGHALPDFLPETAYIRRDGDWKVAPDPPD 60 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChhhcCCCCCCCceeCCCCcc
Confidence 5899999999999999999999999999999999 99999999999 8878999999875
No 8
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=99.46 E-value=3.2e-14 Score=120.85 Aligned_cols=76 Identities=26% Similarity=0.402 Sum_probs=69.4
Q ss_pred ceEEeccCChHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCccccccc-CCCceecCCCCC
Q 039676 27 GVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGAL-PGFDAATRYIR-EGEWTCALVPPP 103 (103)
Q Consensus 27 gv~i~~~~~~~~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~l-PdFl~eT~~IR-~~~W~vap~P~~ 103 (103)
.+.+..+..++ ..|++++|++|+++||+.|++||++||++|.++|+.+|+|.+ |+|+++|.+|| +..|++..+|+|
T Consensus 14 ~~~~~~~~~p~-~~il~~~a~~f~~~l~~~l~prr~~Ll~~R~~~q~~~d~G~l~p~f~~~~~~~r~~~~W~~~~~p~d 91 (545)
T COG2225 14 DLFVTKEALPG-TGILTEEALEFVAELVRDLTPRRRQLLAKRDERQALIDIGYLLPDFVVETMNARYNARWGSLYYPTD 91 (545)
T ss_pred hhhhccccCCc-cccChHHHHHHHHHHHHHhhHHHHHhhhCCHHHHHhHhcccccchhHHHHHhhhhccCcccCCCCch
Confidence 44566666677 899999999999999999999999999999999999999998 99999999999 667999998876
No 9
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=87.96 E-value=0.99 Score=28.03 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039676 50 VADLQREFRNRLKYAMECRREAKRRYNE 77 (103)
Q Consensus 50 La~Lhr~F~~rR~~LL~~R~~rQ~~id~ 77 (103)
+..-++.|.+.|+.||++|.+.-.+-+.
T Consensus 22 mkrycrafrqdrdallear~kl~~r~~e 49 (54)
T PF13260_consen 22 MKRYCRAFRQDRDALLEARNKLFRRSGE 49 (54)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccch
Confidence 4567899999999999999887666543
No 10
>PRK11546 zraP zinc resistance protein; Provisional
Probab=69.04 E-value=23 Score=25.97 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=33.8
Q ss_pred HhhcCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCCCC
Q 039676 38 FAKILNKDALQFVADLQREFR----NRLKYAMECRREAKRRYNEGALPG 82 (103)
Q Consensus 38 ~~~ILT~eAL~FLa~Lhr~F~----~rR~~LL~~R~~rQ~~id~G~lPd 82 (103)
+..=||||=.+=+..||.+|. +-|++|..+|.+-++.+. +..||
T Consensus 40 ~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~-~~~pD 87 (143)
T PRK11546 40 NAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLT-ANPPD 87 (143)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCC
Confidence 345699999999999999997 458888888888888774 34433
No 11
>cd00728 malate_synt_G Malate synthase G (MSG), monomeric enzyme present in some bacteria. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=68.05 E-value=4.9 Score=36.30 Aligned_cols=28 Identities=11% Similarity=0.283 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039676 50 VADLQREFRNRLKYAMECRREAKRRYNE 77 (103)
Q Consensus 50 La~Lhr~F~~rR~~LL~~R~~rQ~~id~ 77 (103)
++.|.+.|.++-++||++|.+-|++||+
T Consensus 31 ~~~~~~~~~p~n~~ll~~r~~lq~~id~ 58 (712)
T cd00728 31 FDEIVHDLTPRNRALLAKRDELQAKIDD 58 (712)
T ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999983
No 12
>PRK02999 malate synthase G; Provisional
Probab=67.68 E-value=4.8 Score=36.43 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039676 50 VADLQREFRNRLKYAMECRREAKRRYN 76 (103)
Q Consensus 50 La~Lhr~F~~rR~~LL~~R~~rQ~~id 76 (103)
++.|.+.|.++-++||++|.+-|++||
T Consensus 39 ~~~~v~~~~p~n~~ll~~r~~lq~~id 65 (726)
T PRK02999 39 FAAIVHDLAPKNRALLAKRDELQAKID 65 (726)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999998
No 13
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=66.53 E-value=14 Score=27.16 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCCCCCccccccc
Q 039676 44 KDALQFVADLQREFRNRLKYAMECRREA----KRRYNEGALPGFDAATRYIR 91 (103)
Q Consensus 44 ~eAL~FLa~Lhr~F~~rR~~LL~~R~~r----Q~~id~G~lPdFl~eT~~IR 91 (103)
.+|++-|+.|...|..-|+.|...|... ...+..|..|+|+..-..|.
T Consensus 1 ~~~~~~l~~le~~F~~~Rd~lY~e~l~~L~~el~~l~~~t~pe~l~~l~~l~ 52 (205)
T PF08598_consen 1 QEALDDLAKLEKQFAELRDQLYRERLAQLQQELEQLQEGTHPEYLRRLQDLE 52 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH----------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3789999999999999999998877653 35567999999997765543
No 14
>TIGR01345 malate_syn_G malate synthase G. This model describes the G isozyme of malate synthase. Isocitrate synthase and malate synthase form the glyoxylate shunt, which generates additional TCA cycle intermediates.
Probab=66.32 E-value=5.4 Score=36.09 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039676 49 FVADLQREFRNRLKYAMECRREAKRRYN 76 (103)
Q Consensus 49 FLa~Lhr~F~~rR~~LL~~R~~rQ~~id 76 (103)
=++.|.+.|.++-++||++|..-|++||
T Consensus 36 ~~~~~~~~~~p~n~~ll~~r~~lq~~id 63 (721)
T TIGR01345 36 GFDEIVHDLAPENRQLLAERDEIQAAID 63 (721)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999987
No 15
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=44.21 E-value=39 Score=30.06 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 039676 46 ALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGF 83 (103)
Q Consensus 46 AL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdF 83 (103)
--.|.+.|.+.-+--++.|+..|+.-+..+++|.+|=+
T Consensus 368 ~~~F~e~Ld~~lela~~~l~~~R~~l~~~~~~~~~P~~ 405 (623)
T PRK08271 368 RDDFLEILRERVDKIHKYQLAYREIMEERIAAGMLPLY 405 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 44899999999999999999999888888888888744
No 16
>PF08690 GET2: GET complex subunit GET2; InterPro: IPR014802 This family corresponds to the GET complex subunit GET2. The GET complex is involved in the retrieval of ER resident proteins from the Golgi []. ; PDB: 3SJD_D 3ZS9_C.
Probab=39.20 E-value=30 Score=28.00 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 039676 60 RLKYAMECRREAKRRYNEG 78 (103)
Q Consensus 60 rR~~LL~~R~~rQ~~id~G 78 (103)
+.+.| +|++||++|.+|
T Consensus 6 EkrRL--rRERReAKi~~G 22 (302)
T PF08690_consen 6 EKRRL--RRERREAKIKAG 22 (302)
T ss_dssp HHHHH--HHHHHHHHHHCC
T ss_pred HHHHH--HHHHHHHHHHCC
Confidence 44456 677788888766
No 17
>PF01969 DUF111: Protein of unknown function DUF111; InterPro: IPR002822 The proteins in this family have no known function.; PDB: 3C19_A.
Probab=37.97 E-value=11 Score=31.53 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCCcccccCCCCccccccccccCC--cceEEeccCChHHhhcCcHHHHHHHHHHHHHHHHHHH
Q 039676 2 VGLGTYGYAAPTMTKKISAHYDVP--EGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLK 62 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~gv~i~~~~~~~~~~ILT~eAL~FLa~Lhr~F~~rR~ 62 (103)
+|-|+-..+-+..++-.|++-... .|+.+.+ .+...++.||-..+.|+.|...|.+.-.
T Consensus 152 ~G~G~v~~aHG~lPvPaPAtlelL~~~g~pv~~--~~~~~El~TPTGAAil~~l~~~f~~~p~ 212 (382)
T PF01969_consen 152 LGSGFVKCAHGILPVPAPATLELLRRKGIPVYG--GPVEGELVTPTGAAILAALADEFGPMPP 212 (382)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 578888888898888888875555 6777765 3456899999999999999999986443
No 18
>cd08333 DED_Caspase_8_repeat1 Death effector domain, repeat 1, of Caspase-8. Death effector domain (DED) found in caspase-8 (CASP8, FLICE), repeat 1. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-10, and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 also plays many important non-apoptotic functions including roles in embryonic development, cell adhesion and motility, immune cell proliferation and differentiation, T-cell activation, and NFkappaB signaling. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the
Probab=31.85 E-value=47 Score=21.89 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=21.8
Q ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 039676 38 FAKILNKDALQFVADLQREFRNRLKYAME 66 (103)
Q Consensus 38 ~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~ 66 (103)
-..+|+++-+.||++|....+ |..||.
T Consensus 48 k~~~L~~~nl~~L~elL~~I~--R~DLl~ 74 (82)
T cd08333 48 EKGLLEEGNLSFLKELLYRIG--RIDLLT 74 (82)
T ss_pred HcCCCCcchHHHHHHHHHHcC--HHHHHH
Confidence 368999999999999988776 666654
No 19
>TIGR02453 conserved hypothetical protein TIGR02453. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.
Probab=27.23 E-value=97 Score=23.69 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=12.2
Q ss_pred CcHHHHHHHHHHHH
Q 039676 42 LNKDALQFVADLQR 55 (103)
Q Consensus 42 LT~eAL~FLa~Lhr 55 (103)
|++++++||.+|..
T Consensus 1 f~~~~l~FL~~L~~ 14 (217)
T TIGR02453 1 FIPEALDFLKALAA 14 (217)
T ss_pred CChhHHHHHHHHHH
Confidence 57899999999975
No 20
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=26.93 E-value=25 Score=26.78 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039676 44 KDALQFVADLQREFRNRLKYA 64 (103)
Q Consensus 44 ~eAL~FLa~Lhr~F~~rR~~L 64 (103)
.+|..|.++|..+|...|+.|
T Consensus 54 adAqHfaael~gRf~~eR~~l 74 (176)
T COG0279 54 ADAQHFAAELTGRFEKERPSL 74 (176)
T ss_pred hhHHHHHHHHhhHHHhcCCCC
Confidence 589999999999999988765
No 21
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=25.60 E-value=59 Score=24.53 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 039676 45 DALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGF 83 (103)
Q Consensus 45 eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdF 83 (103)
|.-+|...+|..|=..|++|+..= ..+..|.+|||
T Consensus 84 eL~~~~~raHe~~lkkR~~i~~~~----t~~~~gGm~D~ 118 (167)
T COG1507 84 ELRAFYRRAHESYLKKRDAIEPLG----TTVSGGGMPDR 118 (167)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccC----CeecCCCcchH
Confidence 456788888998888888886443 55668889998
No 22
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=25.54 E-value=1.3e+02 Score=22.64 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 039676 44 KDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGF 83 (103)
Q Consensus 44 ~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdF 83 (103)
.++..=+.+|.++|+..++-++++|.+.=+ ..|+|
T Consensus 5 ~e~~~e~~~le~ky~~~~~p~y~kR~~II~-----gIP~F 39 (185)
T PTZ00008 5 EECAKEQMNIQRQFDEKKKPLFEKRQEIIE-----KIPGF 39 (185)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHh-----cCccH
Confidence 345555678999999999999999876543 35666
No 23
>PF11444 DUF2895: Protein of unknown function (DUF2895); InterPro: IPR021548 This is a bacterial family of uncharacterised proteins.
Probab=25.52 E-value=62 Score=24.99 Aligned_cols=56 Identities=13% Similarity=0.284 Sum_probs=34.1
Q ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-CCCCCCCCcccccccCCCceec
Q 039676 37 EFAKILNKDALQFVADLQREFRNRLKYA-MECRREAKRRYN-EGALPGFDAATRYIREGEWTCA 98 (103)
Q Consensus 37 ~~~~ILT~eAL~FLa~Lhr~F~~rR~~L-L~~R~~rQ~~id-~G~lPdFl~eT~~IR~~~W~va 98 (103)
.+..-|||.|.+|| .+.|+.|++.= |..|.+.-..|. .|...+ .-.-+-.|.|.|.
T Consensus 91 ~l~~YlTP~c~~~L---~~d~~~r~~~geL~~R~R~v~eipgrgy~~~---rV~~~s~d~W~V~ 148 (199)
T PF11444_consen 91 RLSAYLTPSCQAFL---EQDYEQRRNNGELRGRVRGVYEIPGRGYSDD---RVKVLSPDSWTVW 148 (199)
T ss_pred hhhhhcCHHHHHHH---HHHHHHHHhccchhhceeeeeecCCCCCCCC---ceEEeCCCcEEEE
Confidence 45678999998876 56777555443 666666555554 454443 2233344559884
No 24
>PF09365 DUF2461: Conserved hypothetical protein (DUF2461); InterPro: IPR012808 Members of this family are widely (though sparsely) distributed bacterial proteins, about 230 residues in length and in fungal proteins, which are around 400 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown.
Probab=25.30 E-value=87 Score=23.78 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=11.4
Q ss_pred cHHHHHHHHHHHH
Q 039676 43 NKDALQFVADLQR 55 (103)
Q Consensus 43 T~eAL~FLa~Lhr 55 (103)
+|++++||.+|..
T Consensus 1 ~~~tl~FL~~L~~ 13 (212)
T PF09365_consen 1 SPETLDFLRDLAA 13 (212)
T ss_pred CchHHHHHHHHHH
Confidence 5899999999974
No 25
>COG2187 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.98 E-value=1.4e+02 Score=24.96 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=30.2
Q ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039676 38 FAKILNKDALQFVADLQREFRNRLKYAMECRRE 70 (103)
Q Consensus 38 ~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~ 70 (103)
....+|++.++++....+.|=.|+..|+++|..
T Consensus 173 l~~~~s~~~~d~i~~~t~~f~e~~~~lf~~R~~ 205 (337)
T COG2187 173 LGIVQSKQQIDRIEHMTEEFLERHGPLFDRRIA 205 (337)
T ss_pred cCcccCHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 457899999999999999999999999999865
No 26
>PF06037 DUF922: Bacterial protein of unknown function (DUF922); InterPro: IPR010321 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.59 E-value=1.6e+02 Score=21.54 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 039676 51 ADLQREFRNRLKYAMECRREAKRRYNEGA 79 (103)
Q Consensus 51 a~Lhr~F~~rR~~LL~~R~~rQ~~id~G~ 79 (103)
..|....+.+..++|++-.++|.+||.-+
T Consensus 121 ~~l~~~~~~~~~~~l~~~~~~q~~fDr~E 149 (161)
T PF06037_consen 121 QKLRAEANRRTDAILARHRQRQRDFDRVE 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 35677888889999999999999998743
No 27
>cd08334 DED_Caspase_8_10_repeat2 Death effector domain, repeat 2, of initator caspases 8 and 10. Death Effector Domain (DED) found in caspase-8 and caspase-10, repeat 2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis, and they play partially redundant roles. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. They contain two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains foun
Probab=23.05 E-value=1.2e+02 Score=19.77 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=21.9
Q ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 039676 38 FAKILNKDALQFVADLQREFRNRLKYAMEC 67 (103)
Q Consensus 38 ~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~ 67 (103)
-..+|+++-+.||++|.... |..|+..
T Consensus 51 k~~~l~~~nl~~L~elL~~i---r~dLl~~ 77 (83)
T cd08334 51 KQGLLGEDNLDELKRILKSL---DKKLAKK 77 (83)
T ss_pred HcCCCCCccHHHHHHHHHHH---HHHHHHH
Confidence 36889999999999999877 6666544
No 28
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=23.00 E-value=2.7e+02 Score=19.57 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=19.3
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 039676 44 KDALQFVA---DLQREFRNRLKYAMECRREA 71 (103)
Q Consensus 44 ~eAL~FLa---~Lhr~F~~rR~~LL~~R~~r 71 (103)
.+|..|+. .-|+++..++++|+.+++.-
T Consensus 38 ~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l 68 (109)
T PF11690_consen 38 KEAYDFIDKVVDQHQRYCDERRKLRKKIQDL 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777766 55677777788887766654
No 29
>KOG4017 consensus DNA excision repair protein XPA/XPAC/RAD14 [Replication, recombination and repair]
Probab=22.73 E-value=1.4e+02 Score=24.30 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=15.7
Q ss_pred CCCCCCcccccccCCCceecC
Q 039676 79 ALPGFDAATRYIREGEWTCAL 99 (103)
Q Consensus 79 ~lPdFl~eT~~IR~~~W~vap 99 (103)
..-.|-++| .|-+|.|++..
T Consensus 243 H~Hef~~e~-~~eEd~y~~tc 262 (274)
T KOG4017|consen 243 HVHEFGPET-GIEEDGYRITC 262 (274)
T ss_pred cceecCCCC-CCCCCcceeEe
Confidence 346899999 88888898864
No 30
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=22.55 E-value=1.9e+02 Score=20.84 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039676 45 DALQFVADLQREFRNRLKYAMEC 67 (103)
Q Consensus 45 eAL~FLa~Lhr~F~~rR~~LL~~ 67 (103)
-||++|..+.++|.+..++.+..
T Consensus 88 ~aL~~L~~i~~~f~~~I~~~~~~ 110 (164)
T PF13925_consen 88 VALEMLRSILKKFGPVIRSNLSA 110 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999988774
No 31
>PRK04194 hypothetical protein; Provisional
Probab=22.50 E-value=44 Score=28.07 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=42.9
Q ss_pred CCCcccccCCCCccccccccccCCcceEEeccCChHHhhcCcHHHHHHHHHHHHHHHH
Q 039676 2 VGLGTYGYAAPTMTKKISAHYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRN 59 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~~~~~~ILT~eAL~FLa~Lhr~F~~ 59 (103)
+|-|+...+-+..++-.|++.....|+.+.+. ....++.||--.+.|+.|...|..
T Consensus 153 ~G~G~V~~aHG~lPVPaPAt~eil~~~~~~~~--~~~~EL~TPTGAAil~~l~~~f~~ 208 (392)
T PRK04194 153 LGGGFVKTAHGILPVPAPATLELLKGIPVYGG--DVEGELTTPTGAAILAALADEFGP 208 (392)
T ss_pred cCCeEEEeccCCCCCCHHHHHHHHcCCCccCC--CCCccccChHHHHHHHHHHhhcCC
Confidence 68888889999998888876444456666543 334689999999999999988854
No 32
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=22.05 E-value=1.2e+02 Score=22.43 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=33.2
Q ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 039676 39 AKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALP 81 (103)
Q Consensus 39 ~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lP 81 (103)
...|+++.++-+.++..+|..++..||..=...|..+ |.+|
T Consensus 13 ~~~~~~~~~~~i~~ii~~~~~~~~~li~~L~~iQ~~~--GyIp 53 (169)
T PRK07571 13 THPSGDKRFKVLEATMKRNQYRQDALIEVLHKAQELF--GYLE 53 (169)
T ss_pred cCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCCC
Confidence 3567888888889999999889999988888888766 6665
No 33
>COG3388 Predicted transcriptional regulator [Transcription]
Probab=21.78 E-value=2.2e+02 Score=19.89 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=20.9
Q ss_pred hHHhhcCcHHHHHHHHHHHHHHHHHHH
Q 039676 36 EEFAKILNKDALQFVADLQREFRNRLK 62 (103)
Q Consensus 36 ~~~~~ILT~eAL~FLa~Lhr~F~~rR~ 62 (103)
..+..|+|+++.+|+.++-+.-..--.
T Consensus 61 S~~GAi~td~~~e~ie~i~~dl~ei~e 87 (101)
T COG3388 61 SRQGAILTDDFPEFIEEIIGDLSEINE 87 (101)
T ss_pred cccCCccCccHHHHHHHHHHHHHHHHH
Confidence 567899999999999987776554333
No 34
>TIGR02683 upstrm_HI1419 probable addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.
Probab=21.51 E-value=2e+02 Score=18.67 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=15.3
Q ss_pred hcCcHHHHHHHHHH-HHHHHHHH
Q 039676 40 KILNKDALQFVADL-QREFRNRL 61 (103)
Q Consensus 40 ~ILT~eAL~FLa~L-hr~F~~rR 61 (103)
-..+.++.+||..| -..-..+.
T Consensus 3 i~~~~~~~~~l~~L~d~~~~~kI 25 (95)
T TIGR02683 3 IDRTDTFDKWLDGLKDPRAKARI 25 (95)
T ss_pred eeccchHHHHHHhCCCHHHHHHH
Confidence 45678999999999 55533333
No 35
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=21.48 E-value=1.7e+02 Score=17.94 Aligned_cols=26 Identities=12% Similarity=0.350 Sum_probs=15.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Q 039676 42 LNKDALQFVADLQREFRNRLKYAMEC 67 (103)
Q Consensus 42 LT~eAL~FLa~Lhr~F~~rR~~LL~~ 67 (103)
|.++--.=|.+|+++|...|+=+|.+
T Consensus 20 LD~~ME~Eieelr~RY~~KRqPIldA 45 (49)
T PF11629_consen 20 LDPEMEQEIEELRQRYQAKRQPILDA 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccHHHH
Confidence 44444555666677777666666654
No 36
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=21.37 E-value=1.7e+02 Score=18.45 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=21.5
Q ss_pred HhhcCcHHHHHHHHHHHH---HHHHHHHHHHHH
Q 039676 38 FAKILNKDALQFVADLQR---EFRNRLKYAMEC 67 (103)
Q Consensus 38 ~~~ILT~eAL~FLa~Lhr---~F~~rR~~LL~~ 67 (103)
|.-++|+.|...|..|.. ....+..+.|..
T Consensus 2 y~i~~~~~a~k~lkkl~~~~~~~~~~i~~~i~~ 34 (89)
T TIGR00053 2 LKIEYSKQFDKDLKKLSKRNGKDLKKLLKKMEE 34 (89)
T ss_pred cceEECHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 445789999999999977 555555555554
No 37
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=21.04 E-value=1.7e+02 Score=25.28 Aligned_cols=36 Identities=17% Similarity=0.402 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCC
Q 039676 48 QFVADLQREFRNRLKYAMECRREAKRRYN--EGALPGFD 84 (103)
Q Consensus 48 ~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id--~G~lPdFl 84 (103)
..|.+|. +|+.|+++.+..|+.-|+-|| .|..+.+.
T Consensus 229 ~Ll~E~K-kiEarkke~~~~~~~l~rlld~ad~~i~~~s 266 (445)
T KOG2656|consen 229 ALLVELK-KIEARKKERLAERQDLLRLLDSADGDITQYS 266 (445)
T ss_pred HHHHHHH-HHHHHhhhhhhhhHHHHHhhhcccccccccc
Confidence 3567776 799999999999999999998 46666554
Done!