Query 039676
Match_columns 103
No_of_seqs 104 out of 459
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 20:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cuz_A MSA, malate synthase A; 99.9 2.4E-26 8.1E-31 193.0 8.2 80 24-103 6-85 (532)
2 3cux_A Malate synthase; TIM ba 99.9 1.6E-26 5.5E-31 193.9 6.7 80 24-103 3-82 (528)
3 2xus_A Breast cancer metastasi 79.1 4.4 0.00015 24.0 4.6 27 44-70 9-35 (49)
4 3s9z_A Malate synthase G; inhi 74.0 3.1 0.00011 36.4 4.2 28 49-76 38-65 (741)
5 1p7t_A MSG, malate synthase G; 65.7 6.1 0.00021 34.6 4.2 27 50-76 39-65 (731)
6 2w9y_A CE-FAR-7, fatty acid/re 41.0 36 0.0012 23.9 4.2 25 40-64 78-102 (140)
7 3ga8_A HTH-type transcriptiona 39.9 21 0.00073 21.7 2.6 30 39-68 44-74 (78)
8 3bpq_B Toxin RELE3; protein to 34.4 12 0.00042 21.8 0.7 19 40-58 3-21 (88)
9 4dci_A Uncharacterized protein 32.7 99 0.0034 21.7 5.4 37 41-77 66-102 (150)
10 1xkm_B Distinctin chain B; por 32.4 44 0.0015 17.0 2.6 14 45-58 8-21 (26)
11 3kyp_A Pfnaps, nucleosome asse 31.4 80 0.0028 22.5 4.9 38 42-84 15-52 (193)
12 3lay_A Zinc resistance-associa 31.2 1.4E+02 0.0049 21.2 6.2 35 41-75 67-105 (175)
13 4abx_A DNA repair protein RECN 29.8 34 0.0011 23.8 2.5 30 47-76 131-160 (175)
14 3tbi_B DNA-directed RNA polyme 28.6 1.2E+02 0.0042 22.8 5.6 37 43-79 175-211 (228)
15 1g1s_C PSGL-1 peptide, PSGL-1; 23.9 23 0.00077 18.5 0.5 9 81-89 10-18 (28)
16 3zs9_C Golgi to ER traffic pro 23.4 86 0.0029 17.5 2.9 12 67-78 13-24 (38)
17 2ajj_A NS5A, nonstructural pro 21.7 98 0.0034 16.1 3.1 19 46-64 5-23 (28)
No 1
>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.04A {Escherichia coli} PDB: 3cv1_A 3cv2_A*
Probab=99.93 E-value=2.4e-26 Score=193.04 Aligned_cols=80 Identities=23% Similarity=0.485 Sum_probs=76.9
Q ss_pred CCcceEEeccCChHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCceecCCCCC
Q 039676 24 VPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREGEWTCALVPPP 103 (103)
Q Consensus 24 ~~~gv~i~~~~~~~~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdFl~eT~~IR~~~W~vap~P~~ 103 (103)
.++||+|.++..+.|++|||||||+||+.||++|++||++||++|++||++||+|.+|||+|+|++||+++|+|+|+|++
T Consensus 6 ~~~~~~~~~~~~~~~~~ilt~~al~fl~~l~~~f~~~r~~ll~~R~~~~~~~~~g~~p~fl~~t~~ir~~~W~va~~p~~ 85 (532)
T 3cuz_A 6 TTDELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQRNKLLAARIQQQQDIDNGTLPDFISETASIRDADWKIRGIPAD 85 (532)
T ss_dssp CCCCEEECSCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSTTHHHHTSCCCCSCCCGG
T ss_pred CCCceeECCCCCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCccchhccCCCCccCCCChh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999989999999975
No 2
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Probab=99.93 E-value=1.6e-26 Score=193.92 Aligned_cols=80 Identities=28% Similarity=0.523 Sum_probs=73.4
Q ss_pred CCcceEEeccCChHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccCCCceecCCCCC
Q 039676 24 VPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIREGEWTCALVPPP 103 (103)
Q Consensus 24 ~~~gv~i~~~~~~~~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdFl~eT~~IR~~~W~vap~P~~ 103 (103)
.++||+|.++..+.|++|||||||+||+.||++|++||++||++|++||++||+|.+|||+++|++||+++|+|+|+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~ilt~~al~fl~~l~~~f~~~r~~ll~~r~~~~~~~~~g~~p~fl~~t~~ir~~~W~~~~~p~~ 82 (528)
T 3cux_A 3 QTSRVTLVGEMLPAYNEILTPEALSFLKELHENFNERRIELLQKRMKKQQKIDAGEFPKFLEETKRIREADWTIAKLPKD 82 (528)
T ss_dssp ---CEEECSCC--CGGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSTTHHHHHSCCCCCCCCGG
T ss_pred CCCceeecCCCCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCccchhhCCCCCccCCCChH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999989999999975
No 3
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=79.10 E-value=4.4 Score=24.01 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039676 44 KDALQFVADLQREFRNRLKYAMECRRE 70 (103)
Q Consensus 44 ~eAL~FLa~Lhr~F~~rR~~LL~~R~~ 70 (103)
.+|++.|+.|.+.|..-|.+|...|..
T Consensus 9 ~e~ld~l~~LEkqF~~LkEqlY~ERl~ 35 (49)
T 2xus_A 9 SECVSEMLDLEKQFSELKEKLFRERLS 35 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999888754
No 4
>3s9z_A Malate synthase G; inhibitor complex, structural genomics, mycobacterium tuberc structural proteomics project, XMTB; HET: I92; 1.79A {Mycobacterium tuberculosis} PDB: 3s9i_A* 3sad_A* 3saz_A* 3sb0_A* 1n8i_A 1n8w_A* 2gq3_A* 4ex4_A
Probab=74.01 E-value=3.1 Score=36.43 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039676 49 FVADLQREFRNRLKYAMECRREAKRRYN 76 (103)
Q Consensus 49 FLa~Lhr~F~~rR~~LL~~R~~rQ~~id 76 (103)
=++.|...|.++-++||++|.+-|++||
T Consensus 38 g~~~iv~~l~P~Nr~LL~kRd~lQ~~ID 65 (741)
T 3s9z_A 38 GVDKVVADLTPQNQALLNARDELQAQID 65 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999998
No 5
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA, cysteine-sulfenic lyase; HET: ACO PG4; 1.95A {Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A 1d8c_A* 2jqx_A
Probab=65.68 E-value=6.1 Score=34.63 Aligned_cols=27 Identities=4% Similarity=0.139 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039676 50 VADLQREFRNRLKYAMECRREAKRRYN 76 (103)
Q Consensus 50 La~Lhr~F~~rR~~LL~~R~~rQ~~id 76 (103)
++.|...|.++-++||++|.+-|++||
T Consensus 39 ~~~~~~~~~p~n~~ll~~r~~lq~~id 65 (731)
T 1p7t_A 39 FDEIVHDLAPENRQLLAERDRIQAALD 65 (731)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999997
No 6
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=41.01 E-value=36 Score=23.89 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=19.6
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHH
Q 039676 40 KILNKDALQFVADLQREFRNRLKYA 64 (103)
Q Consensus 40 ~ILT~eAL~FLa~Lhr~F~~rR~~L 64 (103)
+=|+|||..|+.+|-+.+..-+.+.
T Consensus 78 ~~L~Peak~Fv~kli~~~r~l~~~~ 102 (140)
T 2w9y_A 78 DGLSPAAVEYAKKLIHMVTTTLCSL 102 (140)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999886655543
No 7
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=39.86 E-value=21 Score=21.67 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=23.2
Q ss_pred hhcCcHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 039676 39 AKILNKDALQFVADLQREFRNRLK-YAMECR 68 (103)
Q Consensus 39 ~~ILT~eAL~FLa~Lhr~F~~rR~-~LL~~R 68 (103)
+.+++++..+.+.++...|..+++ .||.--
T Consensus 44 E~~~~~e~~~~~~~~~~~f~~~vd~~l~~~~ 74 (78)
T 3ga8_A 44 ESIMNKEESDAFMAQVKAFRASVNAETVAPE 74 (78)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CEEECHHHHHHHHHHHHHHHHHHhccCCChH
Confidence 689999999999999999999998 565433
No 8
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=34.35 E-value=12 Score=21.84 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=14.1
Q ss_pred hcCcHHHHHHHHHHHHHHH
Q 039676 40 KILNKDALQFVADLQREFR 58 (103)
Q Consensus 40 ~ILT~eAL~FLa~Lhr~F~ 58 (103)
=++|+.|.+.|..|...-.
T Consensus 3 v~~~~~a~~dl~~l~~~~~ 21 (88)
T 3bpq_B 3 VLFAKTFVKDLKHVPGHIR 21 (88)
T ss_dssp CEEEHHHHHHHTTSCHHHH
T ss_pred EEEcHHHHHHHHhCCHHHH
Confidence 3678999999988865433
No 9
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=32.69 E-value=99 Score=21.73 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=30.7
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039676 41 ILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNE 77 (103)
Q Consensus 41 ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~ 77 (103)
-++|.+.+=++.+...|+.+|.++++++..-..++.+
T Consensus 66 ~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 66 PLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888999999999999999999887766653
No 10
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=32.36 E-value=44 Score=16.96 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q 039676 45 DALQFVADLQREFR 58 (103)
Q Consensus 45 eAL~FLa~Lhr~F~ 58 (103)
||-.+|..|||+..
T Consensus 8 earkyleqlhrklk 21 (26)
T 1xkm_B 8 EARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67888999998753
No 11
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=31.35 E-value=80 Score=22.54 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 039676 42 LNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFD 84 (103)
Q Consensus 42 LT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdFl 84 (103)
|..++..=+.+|.++|+..++-++++|.+-=+ ..|+|=
T Consensus 15 l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~-----~IP~FW 52 (193)
T 3kyp_A 15 LDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQ-----KIPGFW 52 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc-----CCccHH
Confidence 44566666778999999999999999877554 356663
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.19 E-value=1.4e+02 Score=21.20 Aligned_cols=35 Identities=9% Similarity=0.032 Sum_probs=24.8
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q 039676 41 ILNKDALQFVADLQREFRNRLKYAM----ECRREAKRRY 75 (103)
Q Consensus 41 ILT~eAL~FLa~Lhr~F~~rR~~LL----~~R~~rQ~~i 75 (103)
=||+|=.+=+.+|+.+|...+..|- +.|.+-++.+
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~ 105 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALL 105 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999987776654 4444444444
No 13
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=29.81 E-value=34 Score=23.76 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039676 47 LQFVADLQREFRNRLKYAMECRREAKRRYN 76 (103)
Q Consensus 47 L~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id 76 (103)
|.-|..|.|+|+....+|++-+.+.+.+++
T Consensus 131 L~~l~~L~RKyg~~~eell~~~~~~~~eL~ 160 (175)
T 4abx_A 131 LSALSKLKNKYGPTLEDVVEFGAQAAEELA 160 (175)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 455678999999999999999888887764
No 14
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory protein, transcription; 3.00A {Escherichia coli}
Probab=28.57 E-value=1.2e+02 Score=22.80 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 039676 43 NKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGA 79 (103)
Q Consensus 43 T~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~ 79 (103)
..+...-+..|...|...++.+-...+++...+..|.
T Consensus 175 d~~~~~~i~~i~~~~~~~~~~~~~~~~~k~~~l~~GD 211 (228)
T 3tbi_B 175 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 211 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4567788899999999999999999999999998774
No 15
>1g1s_C PSGL-1 peptide, PSGL-1; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens}
Probab=23.92 E-value=23 Score=18.46 Aligned_cols=9 Identities=22% Similarity=0.006 Sum_probs=7.2
Q ss_pred CCCCccccc
Q 039676 81 PGFDAATRY 89 (103)
Q Consensus 81 PdFl~eT~~ 89 (103)
=||+|||+.
T Consensus 10 ydflpetep 18 (28)
T 1g1s_C 10 YDFLPETEP 18 (28)
T ss_pred ccccccCCC
Confidence 389999975
No 16
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=23.41 E-value=86 Score=17.48 Aligned_cols=12 Identities=17% Similarity=0.661 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCC
Q 039676 67 CRREAKRRYNEG 78 (103)
Q Consensus 67 ~R~~rQ~~id~G 78 (103)
.|++||+.|.+|
T Consensus 13 rRERR~aKi~~G 24 (38)
T 3zs9_C 13 LRERRQKKFSNG 24 (38)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHcc
Confidence 567788888776
No 17
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=21.73 E-value=98 Score=16.15 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039676 46 ALQFVADLQREFRNRLKYA 64 (103)
Q Consensus 46 AL~FLa~Lhr~F~~rR~~L 64 (103)
.|+.|-.||..|+.-.+++
T Consensus 5 iLdLl~~lh~~~~~~ikk~ 23 (28)
T 2ajj_A 5 VLDLIYSLHKQINRGLKKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788999999999665554
Done!