Query 039676
Match_columns 103
No_of_seqs 104 out of 459
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 20:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039676.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039676hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n8ia_ c.1.13.1 (A:) Malate s 74.0 1.5 0.00011 36.4 4.2 27 50-76 38-64 (726)
2 d1d8ca_ c.1.13.1 (A:) Malate s 72.8 1.6 0.00012 36.1 4.2 29 49-77 36-64 (720)
3 d1li5a1 a.27.1.1 (A:316-402) C 27.6 41 0.003 19.1 4.0 49 39-87 33-82 (87)
4 d1zj8a1 d.58.36.1 (A:327-406) 20.2 21 0.0016 20.1 1.5 18 41-58 26-43 (80)
5 d2akja1 d.58.36.1 (A:346-430) 19.0 24 0.0017 20.5 1.6 19 40-58 29-47 (85)
6 d2elba1 a.238.1.1 (A:6-273) DC 18.2 1.2E+02 0.009 19.7 6.1 48 40-87 211-265 (268)
7 d1u60a_ e.3.1.2 (A:) Probable 17.7 49 0.0036 24.0 3.4 36 63-98 8-43 (309)
8 d1aopa1 d.58.36.1 (A:81-145) S 16.4 36 0.0026 18.7 1.9 18 40-57 9-26 (65)
9 d1c4ka3 d.125.1.1 (A:570-730) 16.2 56 0.0041 21.6 3.1 46 21-91 88-133 (161)
10 d1wmia1 d.298.1.2 (A:1-88) Hyp 12.5 27 0.002 19.9 0.5 29 38-66 3-31 (88)
No 1
>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=74.01 E-value=1.5 Score=36.38 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039676 50 VADLQREFRNRLKYAMECRREAKRRYN 76 (103)
Q Consensus 50 La~Lhr~F~~rR~~LL~~R~~rQ~~id 76 (103)
++.+.+.|.++-++||++|..-|.+||
T Consensus 38 ~~~iv~~l~P~N~~LL~kR~~lQ~~ID 64 (726)
T d1n8ia_ 38 VDKVVADLTPQNQALLNARDELQAQID 64 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999997
No 2
>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId: 562]}
Probab=72.81 E-value=1.6 Score=36.05 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 039676 49 FVADLQREFRNRLKYAMECRREAKRRYNE 77 (103)
Q Consensus 49 FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~ 77 (103)
=++.+.+.|.++-++||+.|..-|++||+
T Consensus 36 gf~~iv~~l~P~N~~LL~kR~~lQ~~ID~ 64 (720)
T d1d8ca_ 36 NFDEIVHDLAPENRQLLAERDRIQAALDE 64 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999963
No 3
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}
Probab=27.57 E-value=41 Score=19.08 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=28.5
Q ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCccc
Q 039676 39 AKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYN-EGALPGFDAAT 87 (103)
Q Consensus 39 ~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id-~G~lPdFl~eT 87 (103)
..+=||+|++-|-++.+..+.--..=-...++....+. -|...+++.+.
T Consensus 33 DDlNTp~Ala~lfel~k~~N~~~~~~~~~~~~~~~~l~~~~~vLGll~~~ 82 (87)
T d1li5a1 33 DDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQE 82 (87)
T ss_dssp BTSCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCSCSC
T ss_pred hhcCcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhHcCCCCCC
Confidence 46679999999999999987432221112222222332 45566666543
No 4
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.20 E-value=21 Score=20.12 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=16.4
Q ss_pred cCcHHHHHHHHHHHHHHH
Q 039676 41 ILNKDALQFVADLQREFR 58 (103)
Q Consensus 41 ILT~eAL~FLa~Lhr~F~ 58 (103)
++|++-+.+|+++.++|+
T Consensus 26 ~it~~ql~~la~ia~~yg 43 (80)
T d1zj8a1 26 RVSGTILTAVADLMARAG 43 (80)
T ss_dssp EEEHHHHHHHHHHHHHHT
T ss_pred EECHHHHHHHHHHHHHhC
Confidence 579999999999999996
No 5
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=18.99 E-value=24 Score=20.47 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=17.3
Q ss_pred hcCcHHHHHHHHHHHHHHH
Q 039676 40 KILNKDALQFVADLQREFR 58 (103)
Q Consensus 40 ~ILT~eAL~FLa~Lhr~F~ 58 (103)
=.||++-+..|+++.++|+
T Consensus 29 G~lt~~ql~~la~ia~~yg 47 (85)
T d2akja1 29 GRLQADEMEELARIADVYG 47 (85)
T ss_dssp GEECHHHHHHHHHHHHHHS
T ss_pred cEeCHHHHHHHHHHHHHHC
Confidence 5689999999999999996
No 6
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.22 E-value=1.2e+02 Score=19.65 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=28.4
Q ss_pred hcCcHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 039676 40 KILNKDALQFV-------ADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAAT 87 (103)
Q Consensus 40 ~ILT~eAL~FL-------a~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdFl~eT 87 (103)
++|+.+.-.|+ ..+...|+..+..+.+.+++....-+....|+..|..
T Consensus 211 ~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~p~~ 265 (268)
T d2elba1 211 ENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDPLYVPDPDPTD 265 (268)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSSSCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCCCCCCC
Confidence 45555444444 4455556666666666666655555666777776654
No 7
>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli [TaxId: 562]}
Probab=17.65 E-value=49 Score=24.03 Aligned_cols=36 Identities=11% Similarity=-0.027 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcccccccCCCceec
Q 039676 63 YAMECRREAKRRYNEGALPGFDAATRYIREGEWTCA 98 (103)
Q Consensus 63 ~LL~~R~~rQ~~id~G~lPdFl~eT~~IR~~~W~va 98 (103)
++|++--++-+.+..|+.+|+-|+-+.+-.+.|=|+
T Consensus 8 ~~l~~~~~~~~~~~~GkvA~YIP~La~vdp~~fgia 43 (309)
T d1u60a_ 8 QAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAAVA 43 (309)
T ss_dssp HHHHHHHHHHTTCCCCBCCCSSHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHhccCCCCCCCCccHHhcCCChHHeEEE
Confidence 344443334445678999999999998877667665
No 8
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=16.44 E-value=36 Score=18.66 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=16.1
Q ss_pred hcCcHHHHHHHHHHHHHH
Q 039676 40 KILNKDALQFVADLQREF 57 (103)
Q Consensus 40 ~ILT~eAL~FLa~Lhr~F 57 (103)
=++|++-+..|+++.++|
T Consensus 9 G~it~~ql~~la~ia~ky 26 (65)
T d1aopa1 9 GVITTKQWQAIDKFAGEN 26 (65)
T ss_dssp GEEEHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 457999999999999998
No 9
>d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=16.21 E-value=56 Score=21.64 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=31.4
Q ss_pred cccCCcceEEeccCChHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccc
Q 039676 21 HYDVPEGVEIRGRYSEEFAKILNKDALQFVADLQREFRNRLKYAMECRREAKRRYNEGALPGFDAATRYIR 91 (103)
Q Consensus 21 ~~~~~~gv~i~~~~~~~~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~~R~~rQ~~id~G~lPdFl~eT~~IR 91 (103)
+..-|.||.+.-+ .+++|.+++++|..|.. |+ ..+|+|-+|+.-+.
T Consensus 88 i~pYPPGIP~l~P-----GE~i~~~~i~yl~~l~~-~~-------------------~~fPGFe~ei~Gv~ 133 (161)
T d1c4ka3 88 ALPYPPGVFCVAP-----GEKWSETAVKYFTILQD-GI-------------------NNFPGFAPEIQGVY 133 (161)
T ss_dssp BEETTTCSCSBCT-----TEECCHHHHHHHHHHHH-HH-------------------HHSTTSCCCEESSE
T ss_pred eeecCCCCcEECC-----ccccCHHHHHHHHHHHH-hh-------------------hhCCCCCcccCceE
Confidence 3445556666554 58889999999887765 22 13789988877653
No 10
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.48 E-value=27 Score=19.87 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=22.2
Q ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 039676 38 FAKILNKDALQFVADLQREFRNRLKYAME 66 (103)
Q Consensus 38 ~~~ILT~eAL~FLa~Lhr~F~~rR~~LL~ 66 (103)
|+=++|+.|..+|..|......+..+-|.
T Consensus 3 y~v~~~~~A~k~l~kL~~~~~~~I~~~l~ 31 (88)
T d1wmia1 3 YRVKIHKQVVKALQSLPKAHYRRFLEFRD 31 (88)
T ss_dssp SEEEEEHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44578999999999998877666666554
Done!