Query 039678
Match_columns 1015
No_of_seqs 428 out of 1899
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 12:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02400 cellulose synthase 100.0 2E-307 4E-312 2714.3 78.3 1009 1-1015 1-1085(1085)
2 PLN02436 cellulose synthase A 100.0 4E-306 8E-311 2692.4 79.4 1010 1-1015 1-1093(1094)
3 PLN02189 cellulose synthase 100.0 4E-300 9E-305 2643.3 80.5 1009 1-1015 1-1040(1040)
4 PLN02638 cellulose synthase A 100.0 3E-296 7E-301 2616.1 78.5 980 26-1015 9-1079(1079)
5 PLN02915 cellulose synthase A 100.0 7E-291 1E-295 2564.6 76.2 969 29-1015 10-1044(1044)
6 PLN02195 cellulose synthase A 100.0 3E-279 6E-284 2453.3 77.4 948 30-1015 2-977 (977)
7 PLN02248 cellulose synthase-li 100.0 5E-251 1E-255 2221.5 73.7 941 4-1002 89-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 9E-217 2E-221 1881.0 47.0 702 306-1009 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 4E-202 9E-207 1760.5 61.4 726 207-994 6-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 1E-193 2E-198 1698.1 65.8 706 207-992 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 3.9E-66 8.4E-71 627.6 50.9 491 227-968 57-561 (713)
12 PRK11498 bcsA cellulose syntha 100.0 9.9E-66 2.2E-70 625.1 47.1 473 229-968 189-674 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 3.9E-43 8.4E-48 307.4 4.5 80 26-105 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 4.5E-36 9.7E-41 361.6 45.6 358 225-808 40-415 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 1.3E-33 2.9E-38 305.2 24.0 182 471-763 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 2E-30 4.4E-35 295.2 28.5 233 303-767 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 4.2E-29 9.1E-34 289.1 33.4 231 301-767 72-306 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 6.5E-28 1.4E-32 279.1 34.3 283 300-820 45-341 (439)
19 PRK11204 N-glycosyltransferase 100.0 9.9E-28 2.2E-32 274.2 34.0 230 300-767 50-285 (420)
20 PRK14716 bacteriophage N4 adso 100.0 8.8E-26 1.9E-30 264.7 35.4 266 302-794 64-355 (504)
21 PRK11234 nfrB bacteriophage N4 99.9 3.1E-25 6.8E-30 269.3 30.2 242 301-767 60-335 (727)
22 cd06421 CESA_CelA_like CESA_Ce 99.9 1.7E-25 3.7E-30 232.1 21.1 229 304-765 1-234 (234)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 4.9E-25 1.1E-29 231.0 22.2 228 304-761 1-232 (232)
24 cd06427 CESA_like_2 CESA_like_ 99.9 1.1E-23 2.3E-28 223.1 21.9 232 304-767 1-236 (241)
25 cd06435 CESA_NdvC_like NdvC_li 99.9 1.7E-23 3.7E-28 218.9 22.7 173 473-767 58-234 (236)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 2.9E-23 6.3E-28 215.7 9.3 224 304-760 1-228 (228)
27 PRK15489 nfrB bacteriophage N4 99.9 3.3E-20 7.1E-25 223.8 30.7 172 486-766 139-342 (703)
28 TIGR03472 HpnI hopanoid biosyn 99.9 4.8E-20 1E-24 209.3 25.8 234 301-762 38-273 (373)
29 cd04190 Chitin_synth_C C-termi 99.9 1.4E-21 3.1E-26 208.7 11.8 165 504-763 72-243 (244)
30 cd04192 GT_2_like_e Subfamily 99.8 6.7E-20 1.5E-24 189.0 19.1 226 308-760 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.8 2.5E-19 5.5E-24 184.1 17.3 195 304-760 1-195 (196)
32 COG2943 MdoH Membrane glycosyl 99.8 1.6E-16 3.6E-21 180.8 39.3 222 472-814 213-441 (736)
33 cd06434 GT2_HAS Hyaluronan syn 99.8 1.9E-18 4.1E-23 180.2 18.9 168 486-763 62-234 (235)
34 cd06439 CESA_like_1 CESA_like_ 99.8 9.2E-18 2E-22 177.4 20.9 223 300-764 25-251 (251)
35 TIGR03469 HonB hopene-associat 99.8 8.3E-17 1.8E-21 183.7 27.7 243 300-758 36-279 (384)
36 cd02525 Succinoglycan_BP_ExoA 99.7 6.7E-16 1.5E-20 161.3 20.1 232 306-767 2-233 (249)
37 PF13632 Glyco_trans_2_3: Glyc 99.7 9E-16 2E-20 156.7 14.3 138 508-761 1-143 (193)
38 cd06436 GlcNAc-1-P_transferase 99.6 1.2E-14 2.6E-19 149.5 14.9 115 472-593 51-175 (191)
39 cd06438 EpsO_like EpsO protein 99.5 2.4E-13 5.2E-18 138.2 13.9 102 486-593 61-167 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.5 1.4E-12 3E-17 132.8 16.1 122 304-549 1-123 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.4 1.3E-11 2.8E-16 125.9 16.3 65 473-551 57-122 (201)
42 PF13506 Glyco_transf_21: Glyc 99.3 2.6E-11 5.7E-16 125.0 11.9 155 486-759 15-175 (175)
43 cd06433 GT_2_WfgS_like WfgS an 99.2 1.7E-10 3.6E-15 116.0 15.1 54 488-550 62-116 (202)
44 cd02510 pp-GalNAc-T pp-GalNAc- 99.2 4.6E-10 1E-14 123.4 18.4 109 308-533 2-110 (299)
45 cd04196 GT_2_like_d Subfamily 99.2 2.8E-10 6E-15 116.4 14.7 119 307-550 1-120 (214)
46 cd02522 GT_2_like_a GT_2_like_ 99.2 7.8E-10 1.7E-14 114.3 17.3 40 306-351 1-40 (221)
47 PF03142 Chitin_synth_2: Chiti 99.2 5.5E-09 1.2E-13 123.7 25.8 54 711-766 324-379 (527)
48 PF14570 zf-RING_4: RING/Ubox 99.2 1.3E-11 2.9E-16 101.2 2.8 48 37-87 1-48 (48)
49 PLN02726 dolichyl-phosphate be 99.1 1.9E-09 4.2E-14 115.0 19.2 60 473-546 70-129 (243)
50 cd06420 GT2_Chondriotin_Pol_N 99.1 1.2E-09 2.7E-14 109.4 16.3 42 487-534 65-106 (182)
51 cd04186 GT_2_like_c Subfamily 99.1 1.1E-09 2.4E-14 106.9 15.3 51 487-546 60-111 (166)
52 cd06913 beta3GnTL1_like Beta 1 99.1 2.2E-09 4.7E-14 112.0 16.8 43 308-355 1-43 (219)
53 cd06442 DPM1_like DPM1_like re 99.1 5.8E-09 1.3E-13 108.1 17.6 60 473-546 55-114 (224)
54 cd06423 CESA_like CESA_like is 99.0 2.8E-09 6.2E-14 102.7 13.2 63 473-549 55-118 (180)
55 cd02526 GT2_RfbF_like RfbF is 99.0 1.9E-09 4.1E-14 112.9 12.4 49 473-528 49-97 (237)
56 cd04185 GT_2_like_b Subfamily 99.0 4.8E-09 1E-13 107.5 15.0 60 473-543 53-112 (202)
57 PF00535 Glycos_transf_2: Glyc 98.9 1.2E-09 2.7E-14 105.5 5.7 111 472-594 54-166 (169)
58 cd04188 DPG_synthase DPG_synth 98.9 3.2E-08 6.8E-13 102.7 14.1 61 474-548 60-120 (211)
59 PRK10073 putative glycosyl tra 98.8 1.4E-07 3.1E-12 106.3 16.8 110 302-534 4-113 (328)
60 cd04179 DPM_DPG-synthase_like 98.7 1.4E-07 3.1E-12 94.6 13.2 65 473-551 56-120 (185)
61 TIGR01556 rhamnosyltran L-rham 98.7 3.2E-07 6.9E-12 99.9 15.2 68 472-549 46-113 (281)
62 PRK10018 putative glycosyl tra 98.7 3.8E-07 8.1E-12 101.0 15.1 51 472-532 61-111 (279)
63 PRK10063 putative glycosyl tra 98.6 6.6E-07 1.4E-11 97.1 16.4 48 304-355 1-49 (248)
64 KOG2571 Chitin synthase/hyalur 98.5 2.5E-06 5.3E-11 105.1 17.2 48 711-760 549-596 (862)
65 cd00761 Glyco_tranf_GTA_type G 98.5 2.7E-06 5.8E-11 80.1 13.9 52 486-546 62-114 (156)
66 cd04187 DPM1_like_bac Bacteria 98.5 1.8E-06 3.9E-11 87.2 13.3 105 472-594 56-160 (181)
67 COG1216 Predicted glycosyltran 98.4 1E-05 2.2E-10 90.0 18.2 122 303-550 2-125 (305)
68 PF10111 Glyco_tranf_2_2: Glyc 98.4 9.3E-06 2E-10 89.5 17.4 62 487-554 74-135 (281)
69 PTZ00260 dolichyl-phosphate be 98.4 1E-05 2.2E-10 91.7 18.1 42 487-533 148-189 (333)
70 PRK13915 putative glucosyl-3-p 98.3 7.2E-06 1.6E-10 92.0 14.4 51 487-545 101-152 (306)
71 PRK10714 undecaprenyl phosphat 97.8 0.0002 4.2E-09 81.1 13.4 41 487-532 76-116 (325)
72 KOG2547 Ceramide glucosyltrans 97.6 0.0012 2.7E-08 74.9 14.9 157 487-758 156-313 (431)
73 COG0463 WcaA Glycosyltransfera 97.3 0.0015 3.2E-08 62.4 10.3 47 303-355 2-48 (291)
74 cd02511 Beta4Glucosyltransfera 97.2 0.0026 5.7E-08 67.7 11.6 42 488-534 58-99 (229)
75 COG5175 MOT2 Transcriptional r 96.8 0.00054 1.2E-08 76.2 1.9 48 36-86 16-63 (480)
76 PF14446 Prok-RING_1: Prokaryo 95.6 0.0078 1.7E-07 51.3 2.3 46 33-86 4-51 (54)
77 TIGR00570 cdk7 CDK-activating 95.4 0.016 3.4E-07 65.4 4.5 59 33-93 2-60 (309)
78 PF02364 Glucan_synthase: 1,3- 95.3 0.3 6.6E-06 61.3 15.5 83 711-800 409-493 (817)
79 cd02514 GT13_GLCNAC-TI GT13_GL 95.2 0.22 4.7E-06 57.3 13.0 41 307-351 3-43 (334)
80 KOG2978 Dolichol-phosphate man 92.8 0.62 1.3E-05 49.5 9.5 53 472-534 64-116 (238)
81 cd00162 RING RING-finger (Real 88.0 0.49 1.1E-05 36.6 2.9 44 36-85 1-44 (45)
82 PF05290 Baculo_IE-1: Baculovi 87.7 0.34 7.4E-06 48.5 2.2 52 35-90 81-135 (140)
83 KOG2977 Glycosyltransferase [G 85.6 4.8 0.0001 45.4 9.8 42 487-532 143-186 (323)
84 smart00504 Ubox Modified RING 81.3 1.5 3.4E-05 37.3 3.2 44 36-87 3-46 (63)
85 PLN03208 E3 ubiquitin-protein 77.7 2.3 5.1E-05 45.4 3.7 63 19-88 2-80 (193)
86 PRK14559 putative protein seri 75.8 1.3 2.9E-05 55.1 1.6 24 64-88 30-53 (645)
87 PHA02929 N1R/p28-like protein; 75.2 3.2 7E-05 45.8 4.2 55 32-87 172-227 (238)
88 PHA02862 5L protein; Provision 73.6 2.3 5.1E-05 43.3 2.4 48 34-87 2-53 (156)
89 smart00659 RPOLCX RNA polymera 73.4 2 4.4E-05 35.4 1.6 26 36-63 4-29 (44)
90 KOG2068 MOT2 transcription fac 73.0 2.6 5.5E-05 48.2 2.8 52 34-89 249-300 (327)
91 PF03604 DNA_RNApol_7kD: DNA d 72.3 2.7 5.9E-05 32.5 1.9 26 36-63 2-27 (32)
92 PF13639 zf-RING_2: Ring finge 72.1 2.9 6.4E-05 33.6 2.2 43 36-83 2-44 (44)
93 KOG0823 Predicted E3 ubiquitin 69.9 4.2 9.1E-05 44.4 3.4 46 35-88 48-96 (230)
94 PF14447 Prok-RING_4: Prokaryo 69.5 2.1 4.7E-05 36.9 0.9 47 33-89 6-52 (55)
95 KOG0916 1,3-beta-glucan syntha 67.3 1.2E+02 0.0026 41.1 15.8 81 711-801 1173-1258(1679)
96 KOG2932 E3 ubiquitin ligase in 66.2 3.1 6.8E-05 47.0 1.6 44 47-90 84-137 (389)
97 PF13712 Glyco_tranf_2_5: Glyc 65.9 18 0.00039 39.1 7.3 49 487-543 40-89 (217)
98 KOG3800 Predicted E3 ubiquitin 65.3 4.8 0.0001 45.3 2.8 53 35-89 1-53 (300)
99 PF07851 TMPIT: TMPIT-like pro 64.5 1.2E+02 0.0026 35.4 13.7 20 846-865 172-191 (330)
100 KOG3737 Predicted polypeptide 63.1 25 0.00053 41.4 7.9 48 299-349 150-197 (603)
101 PF03966 Trm112p: Trm112p-like 61.9 1.8 4E-05 38.4 -1.0 25 65-89 42-66 (68)
102 KOG0006 E3 ubiquitin-protein l 61.6 6.1 0.00013 44.8 2.8 40 29-69 310-352 (446)
103 smart00184 RING Ring finger. E 61.0 8.6 0.00019 28.4 2.7 39 37-82 1-39 (39)
104 PHA02825 LAP/PHD finger-like p 59.8 7.9 0.00017 40.3 3.0 51 33-89 7-61 (162)
105 PF02318 FYVE_2: FYVE-type zin 58.7 1.7 3.8E-05 42.6 -1.8 48 33-83 53-101 (118)
106 PF14471 DUF4428: Domain of un 57.2 5.7 0.00012 33.8 1.3 28 36-69 1-28 (51)
107 PRK00420 hypothetical protein; 55.5 5.1 0.00011 39.5 0.8 29 54-88 24-52 (112)
108 PF13923 zf-C3HC4_2: Zinc fing 54.8 12 0.00026 29.4 2.7 39 37-82 1-39 (39)
109 PF00097 zf-C3HC4: Zinc finger 54.1 11 0.00023 29.6 2.3 40 37-82 1-41 (41)
110 KOG3736 Polypeptide N-acetylga 53.7 16 0.00034 45.3 4.7 49 300-351 138-186 (578)
111 PF13920 zf-C3HC4_3: Zinc fing 53.7 12 0.00027 30.9 2.7 46 35-88 3-49 (50)
112 PF07282 OrfB_Zn_ribbon: Putat 52.9 9.9 0.00021 33.4 2.1 33 33-66 27-59 (69)
113 smart00291 ZnF_ZZ Zinc-binding 52.2 13 0.00029 30.3 2.6 38 33-75 3-41 (44)
114 PRK14890 putative Zn-ribbon RN 51.0 20 0.00044 31.6 3.6 50 33-84 6-56 (59)
115 PHA02926 zinc finger-like prot 50.6 17 0.00037 39.9 3.8 61 32-92 168-235 (242)
116 PF13704 Glyco_tranf_2_4: Glyc 49.6 57 0.0012 29.9 6.7 31 321-355 5-35 (97)
117 COG5114 Histone acetyltransfer 49.5 5.9 0.00013 44.9 0.2 36 36-75 7-43 (432)
118 PRK12495 hypothetical protein; 49.1 8.7 0.00019 41.8 1.4 29 53-88 42-70 (226)
119 PRK04023 DNA polymerase II lar 48.6 11 0.00024 48.8 2.3 45 32-87 624-674 (1121)
120 PRK00398 rpoP DNA-directed RNA 46.8 12 0.00026 30.7 1.6 27 36-63 5-31 (46)
121 COG4858 Uncharacterized membra 45.9 1.1E+02 0.0025 32.9 8.8 61 917-977 99-162 (226)
122 smart00249 PHD PHD zinc finger 45.7 12 0.00027 29.2 1.5 43 36-82 1-47 (47)
123 KOG1734 Predicted RING-contain 45.3 9.4 0.0002 42.7 0.9 55 26-87 216-281 (328)
124 PRK15103 paraquat-inducible me 44.8 16 0.00035 43.6 2.8 29 52-89 220-248 (419)
125 KOG0311 Predicted E3 ubiquitin 44.2 4 8.7E-05 47.0 -2.1 45 36-86 45-89 (381)
126 PRK12380 hydrogenase nickel in 43.1 8.6 0.00019 37.7 0.2 26 54-86 71-96 (113)
127 TIGR01562 FdhE formate dehydro 41.9 27 0.00058 40.1 3.9 43 33-84 183-232 (305)
128 KOG1941 Acetylcholine receptor 41.5 11 0.00025 43.9 0.9 69 33-104 364-438 (518)
129 TIGR02443 conserved hypothetic 41.3 17 0.00037 32.0 1.7 30 33-62 8-40 (59)
130 COG1996 RPC10 DNA-directed RNA 41.0 13 0.00029 31.5 1.0 28 35-63 7-34 (49)
131 KOG2068 MOT2 transcription fac 40.9 11 0.00024 43.2 0.7 29 60-88 1-31 (327)
132 KOG2824 Glutaredoxin-related p 40.9 16 0.00036 41.0 2.0 22 31-60 226-247 (281)
133 TIGR00155 pqiA_fam integral me 40.7 17 0.00036 43.2 2.1 30 52-89 214-243 (403)
134 PF06906 DUF1272: Protein of u 40.4 28 0.00061 30.4 2.8 47 36-88 7-53 (57)
135 PF01155 HypA: Hydrogenase exp 40.0 6 0.00013 38.7 -1.4 29 54-89 71-99 (113)
136 TIGR02460 osmo_MPGsynth mannos 39.9 78 0.0017 37.1 7.1 42 485-529 140-181 (381)
137 COG2888 Predicted Zn-ribbon RN 39.4 28 0.0006 30.8 2.7 48 34-83 9-57 (61)
138 PRK14503 mannosyl-3-phosphogly 39.4 70 0.0015 37.6 6.6 42 485-529 141-182 (393)
139 cd02335 ZZ_ADA2 Zinc finger, Z 39.3 21 0.00046 29.8 2.0 30 36-69 2-32 (49)
140 PF07649 C1_3: C1-like domain; 38.6 17 0.00037 27.2 1.2 28 36-67 2-29 (30)
141 PRK07220 DNA topoisomerase I; 38.4 16 0.00036 46.5 1.7 48 35-84 590-643 (740)
142 PRK00564 hypA hydrogenase nick 37.8 12 0.00026 36.9 0.3 29 54-89 72-101 (117)
143 KOG0457 Histone acetyltransfer 37.5 14 0.00031 43.7 0.9 57 35-98 15-74 (438)
144 COG4707 Uncharacterized protei 37.3 14 0.0003 35.4 0.6 44 408-462 20-70 (107)
145 cd02249 ZZ Zinc finger, ZZ typ 37.1 25 0.00054 28.9 2.0 31 36-71 2-33 (46)
146 PF14634 zf-RING_5: zinc-RING 35.8 35 0.00075 27.6 2.7 43 37-84 2-44 (44)
147 COG0551 TopA Zn-finger domain 35.8 25 0.00054 35.4 2.2 50 31-84 14-68 (140)
148 cd00350 rubredoxin_like Rubred 33.7 15 0.00032 28.3 0.2 19 69-87 10-28 (33)
149 PRK03681 hypA hydrogenase nick 33.7 15 0.00032 36.1 0.2 29 54-89 71-100 (114)
150 PF11238 DUF3039: Protein of u 33.5 13 0.00028 32.6 -0.2 13 76-88 44-56 (58)
151 TIGR00100 hypA hydrogenase nic 33.4 17 0.00037 35.8 0.6 29 54-89 71-99 (115)
152 COG1813 Predicted transcriptio 33.3 28 0.00062 36.5 2.2 34 37-74 6-39 (165)
153 PRK11827 hypothetical protein; 33.3 28 0.00062 30.8 1.8 32 62-93 12-43 (60)
154 PF00265 TK: Thymidine kinase; 32.3 16 0.00036 38.3 0.3 34 35-68 138-176 (176)
155 TIGR00599 rad18 DNA repair pro 32.2 33 0.00071 40.8 2.7 53 27-87 18-71 (397)
156 PF07754 DUF1610: Domain of un 32.1 37 0.00081 24.9 2.0 24 37-61 1-24 (24)
157 PF09488 Osmo_MPGsynth: Mannos 31.7 68 0.0015 37.7 5.0 56 487-548 142-202 (381)
158 PF03884 DUF329: Domain of unk 31.4 27 0.00058 30.6 1.4 33 73-105 15-53 (57)
159 PRK11595 DNA utilization prote 31.3 29 0.00064 37.7 2.0 39 34-85 5-43 (227)
160 COG3813 Uncharacterized protei 31.0 43 0.00092 30.7 2.6 48 36-89 7-54 (84)
161 PF03452 Anp1: Anp1; InterPro 31.0 5.6E+02 0.012 29.2 11.9 57 300-360 21-79 (269)
162 cd03031 GRX_GRX_like Glutaredo 30.3 23 0.00051 36.4 1.0 43 33-84 98-141 (147)
163 PF15050 SCIMP: SCIMP protein 30.3 52 0.0011 32.9 3.3 40 855-895 2-46 (133)
164 PRK07219 DNA topoisomerase I; 29.6 30 0.00066 44.7 2.1 53 34-89 688-746 (822)
165 COG0068 HypF Hydrogenase matur 29.5 44 0.00094 42.2 3.2 73 15-87 80-184 (750)
166 PF04564 U-box: U-box domain; 29.4 50 0.0011 29.7 2.8 45 35-86 5-49 (73)
167 PRK08359 transcription factor; 29.4 21 0.00045 37.9 0.5 36 33-72 5-42 (176)
168 PF09484 Cas_TM1802: CRISPR-as 29.1 28 0.0006 43.2 1.5 44 31-75 195-254 (593)
169 PRK04296 thymidine kinase; Pro 29.0 28 0.0006 36.7 1.3 35 35-69 141-186 (190)
170 PF00628 PHD: PHD-finger; Int 28.4 40 0.00087 27.7 1.9 44 36-83 1-49 (51)
171 PF06570 DUF1129: Protein of u 28.4 3.1E+02 0.0068 29.4 9.2 25 914-938 81-105 (206)
172 KOG3507 DNA-directed RNA polym 28.3 25 0.00055 30.9 0.7 28 34-63 20-47 (62)
173 cd02336 ZZ_RSC8 Zinc finger, Z 28.1 41 0.00089 28.0 1.9 32 36-72 2-34 (45)
174 COG4818 Predicted membrane pro 27.6 4.4E+02 0.0096 25.7 8.7 26 865-890 5-30 (105)
175 PRK14973 DNA topoisomerase I; 27.5 39 0.00085 44.3 2.5 48 35-85 589-644 (936)
176 PF02709 Glyco_transf_7C: N-te 27.5 45 0.00097 30.6 2.2 50 655-734 18-67 (78)
177 PF09526 DUF2387: Probable met 27.3 39 0.00084 30.8 1.7 30 33-62 7-39 (71)
178 PRK14502 bifunctional mannosyl 26.8 2E+02 0.0044 36.7 8.3 42 485-529 145-186 (694)
179 TIGR00595 priA primosomal prot 26.7 31 0.00067 42.1 1.3 49 46-94 205-258 (505)
180 PF13896 Glyco_transf_49: Glyc 26.4 75 0.0016 36.5 4.3 60 281-351 10-71 (317)
181 TIGR01206 lysW lysine biosynth 26.3 44 0.00096 28.9 1.8 12 36-47 4-15 (54)
182 PRK14714 DNA polymerase II lar 26.0 34 0.00074 45.6 1.6 48 35-89 668-722 (1337)
183 PF00643 zf-B_box: B-box zinc 25.9 42 0.00091 26.5 1.6 31 34-71 3-33 (42)
184 PF13240 zinc_ribbon_2: zinc-r 25.8 19 0.00042 25.8 -0.4 12 73-84 10-21 (23)
185 COG1198 PriA Primosomal protei 25.7 34 0.00074 43.6 1.5 51 44-94 425-480 (730)
186 PRK06319 DNA topoisomerase I/S 25.6 42 0.00091 43.7 2.3 55 33-90 591-659 (860)
187 PF09623 Cas_NE0113: CRISPR-as 25.3 4.1E+02 0.0088 29.4 9.4 61 307-376 3-63 (224)
188 PTZ00293 thymidine kinase; Pro 25.0 35 0.00075 37.2 1.2 35 35-69 138-177 (211)
189 COG4739 Uncharacterized protei 24.9 38 0.00083 35.0 1.4 45 43-87 77-121 (182)
190 KOG0320 Predicted E3 ubiquitin 24.9 47 0.001 35.4 2.0 45 35-85 132-176 (187)
191 PF08274 PhnA_Zn_Ribbon: PhnA 24.8 32 0.0007 26.4 0.6 24 36-61 4-27 (30)
192 PRK03824 hypA hydrogenase nick 24.6 24 0.00053 35.6 -0.0 12 75-86 106-117 (135)
193 PRK14873 primosome assembly pr 24.6 49 0.0011 41.9 2.5 10 76-85 422-431 (665)
194 KOG3738 Predicted polypeptide 24.5 86 0.0019 37.3 4.2 50 300-352 120-169 (559)
195 PF12773 DZR: Double zinc ribb 24.5 50 0.0011 27.2 1.8 12 34-45 12-23 (50)
196 cd00899 b4GalT Beta-4-Galactos 24.4 69 0.0015 35.2 3.3 80 656-765 111-200 (219)
197 TIGR03830 CxxCG_CxxCG_HTH puta 24.0 33 0.00072 33.2 0.8 41 37-87 1-42 (127)
198 PF13248 zf-ribbon_3: zinc-rib 23.9 22 0.00048 26.0 -0.4 15 71-85 11-25 (26)
199 KOG2857 Predicted MYND Zn-fing 23.8 40 0.00086 34.6 1.2 45 34-90 5-50 (157)
200 PF04641 Rtf2: Rtf2 RING-finge 23.8 62 0.0013 36.1 2.9 51 32-88 111-162 (260)
201 COG2191 Formylmethanofuran deh 23.3 32 0.0007 37.2 0.6 25 35-69 173-201 (206)
202 PF03107 C1_2: C1 domain; Int 23.0 53 0.0012 24.7 1.5 28 36-67 2-29 (30)
203 PF04123 DUF373: Domain of unk 22.7 5.8E+02 0.013 30.1 10.5 35 936-971 287-321 (344)
204 COG4391 Uncharacterized protei 22.6 33 0.00072 30.5 0.4 17 72-88 44-60 (62)
205 cd02340 ZZ_NBR1_like Zinc fing 21.5 66 0.0014 26.4 1.9 29 36-69 2-31 (43)
206 cd00065 FYVE FYVE domain; Zinc 21.4 43 0.00093 28.1 0.8 37 34-73 2-38 (57)
207 COG1326 Uncharacterized archae 21.1 49 0.0011 35.6 1.4 27 35-61 7-38 (201)
208 COG1480 Predicted membrane-ass 20.8 5.1E+02 0.011 33.1 10.0 24 947-970 440-463 (700)
209 KOG1039 Predicted E3 ubiquitin 20.7 71 0.0015 37.3 2.7 58 32-90 159-224 (344)
210 COG0551 TopA Zn-finger domain 20.7 43 0.00093 33.7 0.8 52 32-87 58-112 (140)
211 smart00744 RINGv The RING-vari 20.7 1.2E+02 0.0027 25.4 3.4 45 36-83 1-49 (49)
212 COG1499 NMD3 NMD protein affec 20.6 54 0.0012 38.5 1.7 44 304-351 191-235 (355)
213 PF10571 UPF0547: Uncharacteri 20.5 42 0.00091 24.9 0.5 23 64-87 3-25 (26)
214 KOG2177 Predicted E3 ubiquitin 20.2 52 0.0011 35.0 1.4 44 33-84 12-55 (386)
No 1
>PLN02400 cellulose synthase
Probab=100.00 E-value=1.8e-307 Score=2714.28 Aligned_cols=1009 Identities=64% Similarity=1.163 Sum_probs=922.7
Q ss_pred CCCccccccccccCceEEEeccCCC--CCCCCCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCC
Q 039678 1 MAANAILFAGSHNRNELVLIHNHEE--PKPWKSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQL 78 (1015)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~ 78 (1015)
||+++||+||||||||||+|+.|++ +||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~ 80 (1085)
T PLN02400 1 MEANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQC 80 (1085)
T ss_pred CCCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCcc
Confidence 9999999999999999999998753 58999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCcCCCCCcccccccccccccccchhhhhcchhhhhhh-ccccccCCC--CCCCCCCC-C--cCCC
Q 039678 79 CPQCKTRYKRIKGSPRVEGDADEEDIDDIEHEFNIEDENKIVHNENAKAEAM-LHGKLSYGR--GPNDDEYT-P--VDGE 152 (1015)
Q Consensus 79 Cp~Ckt~ykr~kgsp~v~gd~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~-~--~~~~ 152 (1015)
|||||||||||||||||+|||||||+||+||||+|.++++ .+.++.+... ..+ ..++ ......++ | +++|
T Consensus 81 CPQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~p~lt~g~~~s~e 156 (1085)
T PLN02400 81 CPQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNG--KARHQWQGEDIELS--SSSRHESQPIPLLTHGQPVSGE 156 (1085)
T ss_pred CcccCCccccccCCCCCCcccccccchhhhhhhccccccc--cccccccccCcccc--CcccccCCCCccccCCcccCCC
Confidence 9999999999999999999999999999999999974321 1112222000 000 0000 00112244 3 4788
Q ss_pred CCCCc----cccCC------CCCccCCCCCCCC------------------------cchhhhHHhhhcCcccc--ccCC
Q 039678 153 FPIQQ----KLSSS------LHKRVHPYPDSGG------------------------AKETTDDWKLQQGNLVQ--ETNG 196 (1015)
Q Consensus 153 ~~~~~----~~~~~------~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~--~~~~ 196 (1015)
++.++ .+.++ .||+|||+||+|+ ||||||+||+||+|++. +.++
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~ 236 (1085)
T PLN02400 157 IPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKY 236 (1085)
T ss_pred CCCCCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHHhhhhhhcccccccc
Confidence 88432 34443 3589999999881 99999999999975422 2221
Q ss_pred --C----------CCCCCcccccCCCCceeeeecCCCCcchhHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHH
Q 039678 197 --T----------KDSDTSMIDESRQPLSRKVPIATSKINPYRMVVAARLVIMVLFLQYRIMNPVNDAVGLWLTSVICEI 264 (1015)
Q Consensus 197 --~----------~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~~~~~Wl~~~~~E~ 264 (1015)
+ +++|.++||++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+
T Consensus 237 ~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~ 316 (1085)
T PLN02400 237 HEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEI 316 (1085)
T ss_pred ccccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH
Confidence 1 1357888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccccchhHHHHhhhhhcCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEE
Q 039678 265 WFGFSWILDQFPKWLPIQRETYLERLSIRYEREGEPNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYI 344 (1015)
Q Consensus 265 ~f~~~wil~~~~kw~Pv~R~~~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yv 344 (1015)
||+|+|+|+|++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||
T Consensus 317 wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYv 396 (1085)
T PLN02400 317 WFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYV 396 (1085)
T ss_pred HHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEE
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred ecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039678 345 SDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAK 424 (1015)
Q Consensus 345 sDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~ 424 (1015)
||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++
T Consensus 397 SDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~ 476 (1085)
T PLN02400 397 SDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAK 476 (1085)
T ss_pred ecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhcccc
Q 039678 425 SRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLT 504 (1015)
Q Consensus 425 ~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavlt 504 (1015)
++++|+++|.|+|||+|||++++|||+|||||++++|+.|.++++||+||||||||||||+||+||||||+|+||||+||
T Consensus 477 ~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmT 556 (1085)
T PLN02400 477 AQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLT 556 (1085)
T ss_pred hccCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhc
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccCCCcccchhhhHHHhhhhhhccccccCCcccccc
Q 039678 505 NSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDKSDRYSNRNRVFFDINMKGLDGIQGPMYVGT 584 (1015)
Q Consensus 505 ngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGT 584 (1015)
|||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|++++|||++|+|+||+|||+|+||
T Consensus 557 NaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGT 636 (1085)
T PLN02400 557 NGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGT 636 (1085)
T ss_pred CCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhccchhh------HHH-----Hhhh-------hcchhhhhhh
Q 039678 585 GCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKNSKAN------VIR-----EAAN-------LEGMEENKEH 646 (1015)
Q Consensus 585 GcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~------~~~-----~~~~-------~~~~~~~~~~ 646 (1015)
||+|||+||||++||..++.... ...|++||+.|++.++++.+. .++ .+++ +++++++++.
T Consensus 637 GC~frR~aLYG~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1085)
T PLN02400 637 GCCFNRQALYGYDPVLTEEDLEP-NIIVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEGYDDERSL 715 (1085)
T ss_pred CcceeeeeeccCCCccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 99999999999999865432111 123455777666543221110 010 1222 3456667778
Q ss_pred hhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccchHHHHHHHHhCC
Q 039678 647 LLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRG 726 (1015)
Q Consensus 647 ~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~G 726 (1015)
.+++++++++||+|++|++|++++.||.+...+++++++||+|||||+||++|+||+||||+|+|+|||+.||++||++|
T Consensus 716 ~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rG 795 (1085)
T PLN02400 716 LMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARG 795 (1085)
T ss_pred hhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccC
Confidence 89999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhhcCCcccccccCCCCChhhhHHhhhhhhhhhhhHHHHHHH
Q 039678 727 WRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFSRHNPICYGCKEGKIKFLERFAYINTTIYPFTSIPLLAYC 806 (1015)
Q Consensus 727 wrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~liyl 806 (1015)
|||+|++|++++|.|+||+|+.+++.||+|||+|++||+++++||+++|+. ++|+++||++|+++++||++++++++|+
T Consensus 796 WrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~-~~L~l~QRL~Yl~~~~y~~~slp~liY~ 874 (1085)
T PLN02400 796 WISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYN-GRLKLLERLAYINTIVYPITSIPLLAYC 874 (1085)
T ss_pred CceEecCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998764 4699999999999999999999999999
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhcccchhhhhhhHHHHHHHHHHHHHHHHcCC
Q 039678 807 LLPAICLLTDKFIMPEMSAFSGLLLVALFVSFFASGILELRWSGVTIEEWWRNEQFWVIGGISSHLFAVFQGLAKILTKN 886 (1015)
Q Consensus 807 llP~l~LltG~~i~p~~s~~~~~~fl~lfls~~~~~~Le~rw~g~si~~wWrneqfW~I~~~sa~l~av~~allk~L~g~ 886 (1015)
++|++||++|++++|.++++++++|+++|++++++++||++|+|+++++||||||||+|+++|+++||++++++|+|+++
T Consensus 875 llP~l~LltG~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvLgg~ 954 (1085)
T PLN02400 875 VLPAFCLITNKFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGI 954 (1085)
T ss_pred HHHHHHHHcCCccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeCcCCCCC-cccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHH
Q 039678 887 DTIFTVTFKLFDD-KEDKELYNFKWTALLIPPTTVLIINLVGIVAGITDAINTGYEAMRPLIGKLFFVFWVISHLYPFLK 965 (1015)
Q Consensus 887 ~~~F~VTpK~~~~-~~~~~ly~f~ws~l~iP~~~LlllnLiaiv~Gi~~~i~~~~~~w~~l~g~lf~~~Wvi~~l~Pfl~ 965 (1015)
+++|.||+|..++ +.+.++|+|+||+|++|+++++++|++|+++|+++++++++++|+++++++||++||++|+|||+|
T Consensus 955 ~~~F~VTsK~~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~wvvv~l~Pf~k 1034 (1085)
T PLN02400 955 DTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLK 1034 (1085)
T ss_pred cccceecCCcccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCccccCCC-CCcccCCCC
Q 039678 966 GLMGRQNRTPTIVVIWSILLASIFSLVWMRIDPFVIRARGP-DPKQCGINC 1015 (1015)
Q Consensus 966 gL~gR~~r~P~~v~~~s~~la~~~~~l~v~i~~~~~~~~~~-~~~~~~~~~ 1015 (1015)
|||||++|+|+||++||++||++||||||+|+||+++++|| ++++|||||
T Consensus 1035 gL~gR~~r~P~~v~~~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1035 GLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFVSDTTKAAANGQCGVNC 1085 (1085)
T ss_pred HHhccCCCCceeHHHHHHHHHHHHHHHheeccccccCCCCchhHhhcCcCC
Confidence 99999999999999999999999999999999999999999 899999999
No 2
>PLN02436 cellulose synthase A
Probab=100.00 E-value=3.6e-306 Score=2692.39 Aligned_cols=1010 Identities=65% Similarity=1.185 Sum_probs=936.9
Q ss_pred CCCccccccccccCceEEEeccCCC--CCCCCCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCC
Q 039678 1 MAANAILFAGSHNRNELVLIHNHEE--PKPWKSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQL 78 (1015)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~ 78 (1015)
||+++||+||||||||||+|+.|++ +||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||+|+
T Consensus 1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~ 80 (1094)
T PLN02436 1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1094)
T ss_pred CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 9999999999999999999998853 68999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCcCCCCCcccccccccccccccchhhhhcchhhhhhhccccccCCCCCCCCC-------------
Q 039678 79 CPQCKTRYKRIKGSPRVEGDADEEDIDDIEHEFNIEDENKIVHNENAKAEAMLHGKLSYGRGPNDDE------------- 145 (1015)
Q Consensus 79 Cp~Ckt~ykr~kgsp~v~gd~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 145 (1015)
|||||||||||||||||+||||||++||+||||+|.+++ .+.++.+|+|+|+++++|++.+..+
T Consensus 81 Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1094)
T PLN02436 81 CPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGNNG---LDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPG 157 (1094)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhhcCcccc---cchHHHHHHHhhhhcccCccccccccccccccccCCCc
Confidence 999999999999999999999999999999999997322 2356688999999999988754210
Q ss_pred -----CC-C-cCCCCCCCc--cccCC---CCCccCCCCCCCC------------------------cchhhhHHhhhcCc
Q 039678 146 -----YT-P-VDGEFPIQQ--KLSSS---LHKRVHPYPDSGG------------------------AKETTDDWKLQQGN 189 (1015)
Q Consensus 146 -----~~-~-~~~~~~~~~--~~~~~---~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 189 (1015)
++ + +++|++.+. ++.++ .||+|||+||+|+ ||||||+||+||++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~ 237 (1094)
T PLN02436 158 SQIPLLTYGEEDVEISSDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNE 237 (1094)
T ss_pred CCCcccccCcccCccCCcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhhh
Confidence 22 2 256666332 32333 4799999999771 99999999999974
Q ss_pred cc-cccCC-----C-------CCCCCcccccCCCCceeeeecCCCCcchhHHHHHHHHHHHHHHHHHhhccCCCchhHHH
Q 039678 190 LV-QETNG-----T-------KDSDTSMIDESRQPLSRKVPIATSKINPYRMVVAARLVIMVLFLQYRIMNPVNDAVGLW 256 (1015)
Q Consensus 190 ~~-~~~~~-----~-------~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~~~~~W 256 (1015)
+. ++.++ + +++|.+++|++++||+||+++++++++|||++++++|+++++||+||++|++.+++|+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~W 317 (1094)
T PLN02436 238 KLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLW 317 (1094)
T ss_pred cccccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHH
Confidence 32 22221 1 12467778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccchhHHHHhhhhhcCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCC
Q 039678 257 LTSVICEIWFGFSWILDQFPKWLPIQRETYLERLSIRYEREGEPNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYP 336 (1015)
Q Consensus 257 l~~~~~E~~f~~~wil~~~~kw~Pv~R~~~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP 336 (1015)
+++++||+||+|+|+|+|++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||
T Consensus 318 l~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP 397 (1094)
T PLN02436 318 LTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYP 397 (1094)
T ss_pred HHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCcccccccccccccCCCchHHHHHHHHHHHHHHHHHH
Q 039678 337 VDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKV 416 (1015)
Q Consensus 337 ~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ 416 (1015)
+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+
T Consensus 398 ~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~ 477 (1094)
T PLN02436 398 VDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKV 477 (1094)
T ss_pred ccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHH
Q 039678 417 RMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNAL 496 (1015)
Q Consensus 417 ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNal 496 (1015)
|||+|+++++++|+++|+|+||++|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|
T Consensus 478 RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaL 557 (1094)
T PLN02436 478 KINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSL 557 (1094)
T ss_pred HHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhh
Confidence 99999999899999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccCCCcccchhhhHHHhhhhhhcccccc
Q 039678 497 VRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDKSDRYSNRNRVFFDINMKGLDGI 576 (1015)
Q Consensus 497 lrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~ 576 (1015)
+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+
T Consensus 558 lRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGl 637 (1094)
T PLN02436 558 IRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGI 637 (1094)
T ss_pred hhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccchhhhhhcCCCCCccCCCCCCC----CCCCCCCcccchhhhccchhh---HH-----HHhh-------hh
Q 039678 577 QGPMYVGTGCVFRRQALYGHEPPKAAKRPRMG----TCGCCPCFRRQKQYQKNSKAN---VI-----REAA-------NL 637 (1015)
Q Consensus 577 qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~----~~~~~~c~~~~~~~~~~~~~~---~~-----~~~~-------~~ 637 (1015)
|||+|+||||+|||+||||++||...+.++.. ...|++||+.|+++++++++. .+ ..++ ..
T Consensus 638 qGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1094)
T PLN02436 638 QGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEGI 717 (1094)
T ss_pred CCccccccCceeeeeeeeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999998765543321 123667888777643322111 00 0111 13
Q ss_pred cchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccchHH
Q 039678 638 EGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDIL 717 (1015)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~ 717 (1015)
++++++++..+++++++++||+|++|++|++++.||.+...+++++++||+|||||+||++|+||+||||+|+|+|||+.
T Consensus 718 ~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~ 797 (1094)
T PLN02436 718 EGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDIL 797 (1094)
T ss_pred ccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHH
Confidence 45666788889999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhhcCCcccccccCCCCChhhhHHhhhhhhhhh
Q 039678 718 TGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFSRHNPICYGCKEGKIKFLERFAYINTTIYPF 797 (1015)
Q Consensus 718 tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~~L~l~QRL~Yl~~~ly~l 797 (1015)
||++||++||||+|++|.++||.|+||+|+.+++.||+|||+|++||+++|++|+|+|+. ++|+++||++|+++++||+
T Consensus 798 TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~-~~L~l~QRL~Yl~~~ly~l 876 (1094)
T PLN02436 798 TGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG-GGLKWLERFSYINSVVYPW 876 (1094)
T ss_pred HHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhccc-ccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999989999999999999999999999999999999999998774 4699999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhcccchhhhhhhHHHHHHHHHH
Q 039678 798 TSIPLLAYCLLPAICLLTDKFIMPEMSAFSGLLLVALFVSFFASGILELRWSGVTIEEWWRNEQFWVIGGISSHLFAVFQ 877 (1015)
Q Consensus 798 ~sl~~liylllP~l~LltG~~i~p~~s~~~~~~fl~lfls~~~~~~Le~rw~g~si~~wWrneqfW~I~~~sa~l~av~~ 877 (1015)
+|+++++|+++|++||++|++++|.++.+++++|+++|++++++++||++|+|+++++||||||||+|+++|+++||+++
T Consensus 877 ~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~ 956 (1094)
T PLN02436 877 TSIPLIVYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQ 956 (1094)
T ss_pred HHHHHHHHHHHHHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCceeCcCCCCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHH
Q 039678 878 GLAKILTKNDTIFTVTFKLFDDKEDKELYNFKWTALLIPPTTVLIINLVGIVAGITDAINTGYEAMRPLIGKLFFVFWVI 957 (1015)
Q Consensus 878 allk~L~g~~~~F~VTpK~~~~~~~~~ly~f~ws~l~iP~~~LlllnLiaiv~Gi~~~i~~~~~~w~~l~g~lf~~~Wvi 957 (1015)
+++|+|++++++|.||+|..+++.++++|+|+||++++|+++++++|++|+++|+++++++++++|+++++++||++||+
T Consensus 957 ~iLKvLggs~~~F~VTsK~~d~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvv 1036 (1094)
T PLN02436 957 GLLKVLAGVNTNFTVTSKAADDGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVI 1036 (1094)
T ss_pred HHHHHhccCcccceecccccccccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 99999999999999999998776778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCccccCCCCCcccCCCC
Q 039678 958 SHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLVWMRIDPFVIRARGPDPKQCGINC 1015 (1015)
Q Consensus 958 ~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~~~~l~v~i~~~~~~~~~~~~~~~~~~~ 1015 (1015)
+|+|||+||||||++|+||||++||++||++||||||+||||+++ +||++++|||||
T Consensus 1037 v~lyPf~kgL~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~-~~~~~~~~~~~~ 1093 (1094)
T PLN02436 1037 VHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVSK-GGPVLEICGLDC 1093 (1094)
T ss_pred HHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeeccccCC-CCccccccCccC
Confidence 999999999999999999999999999999999999999999999 999999999999
No 3
>PLN02189 cellulose synthase
Probab=100.00 E-value=4.3e-300 Score=2643.26 Aligned_cols=1009 Identities=78% Similarity=1.342 Sum_probs=935.8
Q ss_pred CCCccccccccccCceEEEeccCCCCCCCCCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCC
Q 039678 1 MAANAILFAGSHNRNELVLIHNHEEPKPWKSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCP 80 (1015)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp 80 (1015)
||+++||+||||||||||+|+.|+..||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||
T Consensus 1 ~~~~~g~~~gs~~r~~~~~~~~~~~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~Cp 80 (1040)
T PLN02189 1 MEASAGLVAGSHNRNELVVIHGHEEPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCP 80 (1040)
T ss_pred CCcccccccccccccceeeeccccCCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCc
Confidence 99999999999999999999987556899999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCCCCcCCCCCcccccccccccccccchhhhhcchhhhhhhccccccCCCCCCCCC-------CC-C----
Q 039678 81 QCKTRYKRIKGSPRVEGDADEEDIDDIEHEFNIEDENKIVHNENAKAEAMLHGKLSYGRGPNDDE-------YT-P---- 148 (1015)
Q Consensus 81 ~Ckt~ykr~kgsp~v~gd~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~---- 148 (1015)
|||||||||||||||+|||||||+||+||||+|.+++ .+.++.+|+|+|+++++|++.+... ++ +
T Consensus 81 qCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1040)
T PLN02189 81 QCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDEQ---DKNKHITEAMLHGKMSYGRGPDDDENNQFPPVITGVRSRP 157 (1040)
T ss_pred ccCCchhhccCCCCcCCccccccchhhhhhccccccc---cchhHHHHHHhhhhcccCCCcccCCCcCCCcccccCcccc
Confidence 9999999999999999999999999999999997533 1256688999999999988765211 22 2
Q ss_pred cCCCCCC------Cc-cccCCCCCccCCCCCCCC------------cchhhhHHhhhcCccccccCCCCCCCCcccccCC
Q 039678 149 VDGEFPI------QQ-KLSSSLHKRVHPYPDSGG------------AKETTDDWKLQQGNLVQETNGTKDSDTSMIDESR 209 (1015)
Q Consensus 149 ~~~~~~~------~~-~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1015)
+++|++. .. +..+..||++||+||+|. ||||||+||+||++... ..+++++|.+++++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~rv~~wk~~~~~~~~-~~~~~~~d~~~~~~~~ 236 (1040)
T PLN02189 158 VSGEFPIGSGYGHGEQMLSSSLHKRVHPYPVSEPGSAKWDEKKEGGWKERMDDWKMQQGNLGP-DPDDYDADMALIDEAR 236 (1040)
T ss_pred ccCCcCccccccccccccCCcccCccCcccccCCCcccCCccccccHHHHHHHHHhhcccCCC-CCCCCchhhhhcccCC
Confidence 3566653 12 344446899999999762 99999999999963321 2244456778889999
Q ss_pred CCceeeeecCCCCcchhHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHH
Q 039678 210 QPLSRKVPIATSKINPYRMVVAARLVIMVLFLQYRIMNPVNDAVGLWLTSVICEIWFGFSWILDQFPKWLPIQRETYLER 289 (1015)
Q Consensus 210 ~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~~~~~Wl~~~~~E~~f~~~wil~~~~kw~Pv~R~~~~dr 289 (1015)
+||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+||
T Consensus 237 ~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~dr 316 (1040)
T PLN02189 237 QPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLDR 316 (1040)
T ss_pred CCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhh
Q 039678 290 LSIRYEREGEPNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVP 369 (1015)
Q Consensus 290 L~~r~~~~~~~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvP 369 (1015)
|++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+|||
T Consensus 317 L~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvP 396 (1040)
T PLN02189 317 LSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVP 396 (1040)
T ss_pred HHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcc
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCC
Q 039678 370 FCKKYSIEPRAPEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDH 449 (1015)
Q Consensus 370 FCkk~~iepR~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dH 449 (1015)
|||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++|+++|.|+||++|||++++||
T Consensus 397 FCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dH 476 (1040)
T PLN02189 397 FCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDH 476 (1040)
T ss_pred cccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhheeccCCCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHH
Q 039678 450 PGMIQVFLGREGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMC 529 (1015)
Q Consensus 450 p~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amc 529 (1015)
|+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||++||+|||
T Consensus 477 p~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMC 556 (1040)
T PLN02189 477 PGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMC 556 (1040)
T ss_pred HHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhh
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcceEEEecCccccCCCcccchhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCC
Q 039678 530 FLMDPQTGKRVCYVQFPQRFDGIDKSDRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGT 609 (1015)
Q Consensus 530 ff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~ 609 (1015)
|||||+.|+++|||||||+|+|++++|||+|++++|||++|+|+||+|||+||||||+|||+||||++|+.....+...+
T Consensus 557 fflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~ 636 (1040)
T PLN02189 557 FLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVT 636 (1040)
T ss_pred hhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeeeeccCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886544444333
Q ss_pred CCCCCCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHH
Q 039678 610 CGCCPCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIH 689 (1015)
Q Consensus 610 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~ 689 (1015)
++|+ ||..++++++. +...+.+...+++.+++++..+++++++++||+|.+|++|++.+.+|.+....++++++||++
T Consensus 637 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~ 714 (1040)
T PLN02189 637 CDCC-PCFGRRKKKHA-KNGLNGEVAALGGMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIH 714 (1040)
T ss_pred cchh-hhccccccccc-ccccccccccccccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHH
Confidence 3333 44333322111 111111122233445566667889999999999999999999999998888889999999999
Q ss_pred hhcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhhcC
Q 039678 690 VMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFSRH 769 (1015)
Q Consensus 690 v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~ 769 (1015)
|+||+||++|+||+||||.|||+|||+.||++||++||||+|++|.+++|.|+||+|+.+++.||+|||+|++||+++++
T Consensus 715 V~sC~YE~~T~WG~evGw~YGSvTED~~TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~ 794 (1040)
T PLN02189 715 VISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRH 794 (1040)
T ss_pred hhccccccCCchhhccCeeccccccHHHHHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccC
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred CcccccccCCCCChhhhHHhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039678 770 NPICYGCKEGKIKFLERFAYINTTIYPFTSIPLLAYCLLPAICLLTDKFIMPEMSAFSGLLLVALFVSFFASGILELRWS 849 (1015)
Q Consensus 770 ~Pl~~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~i~p~~s~~~~~~fl~lfls~~~~~~Le~rw~ 849 (1015)
||+++|+++++|+++||++|+++++||++|+++++|+++|++||++|++++|.++++++.+|+++|+++++++++|++|+
T Consensus 795 nPl~~g~~~~~L~l~QRL~Yl~~~ly~~~sip~liY~~lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~s 874 (1040)
T PLN02189 795 SPLLYGYKGGNLKWLERFAYVNTTIYPFTSLPLLAYCTLPAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWS 874 (1040)
T ss_pred CccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998876567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhcccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCceeCcCCCCCcccccccccccchhhHHHHHHHHHHHHHHH
Q 039678 850 GVTIEEWWRNEQFWVIGGISSHLFAVFQGLAKILTKNDTIFTVTFKLFDDKEDKELYNFKWTALLIPPTTVLIINLVGIV 929 (1015)
Q Consensus 850 g~si~~wWrneqfW~I~~~sa~l~av~~allk~L~g~~~~F~VTpK~~~~~~~~~ly~f~ws~l~iP~~~LlllnLiaiv 929 (1015)
|+++++||||||||+|+++|+|+||++++++|+|++++++|.||+|..++++++++|+|+||++++|+++|+++|++|++
T Consensus 875 G~s~~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvlggs~~~F~VTsK~~~d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv 954 (1040)
T PLN02189 875 GVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATDDDEFGELYAFKWTTLLIPPTTLLIINIVGVV 954 (1040)
T ss_pred CCcHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHhccCcccceeccccccccccccceeecceeHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred HHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCccccCCCCCc
Q 039678 930 AGITDAINTGYEAMRPLIGKLFFVFWVISHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLVWMRIDPFVIRARGPDPK 1009 (1015)
Q Consensus 930 ~Gi~~~i~~~~~~w~~l~g~lf~~~Wvi~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~~~~l~v~i~~~~~~~~~~~~~ 1009 (1015)
+|+++++++++++|+++++++|+++||++|+|||+||||||++|+||||++||++|+++||||||+|+||+++++||.++
T Consensus 955 ~g~~~~~~~~~~~~~~~~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~ 1034 (1040)
T PLN02189 955 AGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDVK 1034 (1040)
T ss_pred HHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhh
Confidence 99999999899899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 039678 1010 QCGINC 1015 (1015)
Q Consensus 1010 ~~~~~~ 1015 (1015)
+||++|
T Consensus 1035 ~~~~~~ 1040 (1040)
T PLN02189 1035 QCGINC 1040 (1040)
T ss_pred ccCcCC
Confidence 999999
No 4
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=3.1e-296 Score=2616.06 Aligned_cols=980 Identities=68% Similarity=1.210 Sum_probs=900.3
Q ss_pred CCCCCCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccccCCCCcCCCCCccc-c
Q 039678 26 PKPWKSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRIKGSPRVEGDADEED-I 104 (1015)
Q Consensus 26 ~~~~~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kgsp~v~gd~~e~~-~ 104 (1015)
+||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||||+ +
T Consensus 9 ~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDeeed~~~ 88 (1079)
T PLN02638 9 AKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEEEDGDA 88 (1079)
T ss_pred CCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCccccccCcc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999998887 8
Q ss_pred cccccccccccchhhhhcchhhhhhhccccccCCCCCCC--------------CCCC-Cc--CCCCCCC----ccccCC-
Q 039678 105 DDIEHEFNIEDENKIVHNENAKAEAMLHGKLSYGRGPND--------------DEYT-PV--DGEFPIQ----QKLSSS- 162 (1015)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~--~~~~~~~----~~~~~~- 162 (1015)
||+||||+|.+++ ....++.+|+|+|++|++|++++. ..++ |+ ++|++.. .++.++
T Consensus 89 dDle~ef~~~~~~--~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 166 (1079)
T PLN02638 89 DDGASDFNYPSSN--QDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPG 166 (1079)
T ss_pred hhhhhhhcccccc--ccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccccccCcc
Confidence 9999999997432 122466789999999999988551 1133 33 6666622 233343
Q ss_pred -CCCccCCCCCCC-------------------------CcchhhhHHhhhcCcccc--ccCC---------------C-C
Q 039678 163 -LHKRVHPYPDSG-------------------------GAKETTDDWKLQQGNLVQ--ETNG---------------T-K 198 (1015)
Q Consensus 163 -~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~--~~~~---------------~-~ 198 (1015)
.||+| ||+| .||||||+||.||+|++. +.++ + +
T Consensus 167 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1079)
T PLN02638 167 AGGKRI---PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDASTDVL 243 (1079)
T ss_pred ccCCcc---cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCccccc
Confidence 46776 4433 199999999999975422 2111 0 1
Q ss_pred CCCCcccccCCCCceeeeecCCCCcchhHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhhcccc
Q 039678 199 DSDTSMIDESRQPLSRKVPIATSKINPYRMVVAARLVIMVLFLQYRIMNPVNDAVGLWLTSVICEIWFGFSWILDQFPKW 278 (1015)
Q Consensus 199 ~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~~~~~Wl~~~~~E~~f~~~wil~~~~kw 278 (1015)
++|.++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||
T Consensus 244 ~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q~~Kw 323 (1079)
T PLN02638 244 MDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQFPKW 323 (1079)
T ss_pred cccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHhhhhhcCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhh
Q 039678 279 LPIQRETYLERLSIRYEREGEPNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLS 358 (1015)
Q Consensus 279 ~Pv~R~~~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~ 358 (1015)
+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.
T Consensus 324 ~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~ 403 (1079)
T PLN02638 324 LPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALS 403 (1079)
T ss_pred cccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHH
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhhhhhhcCCCCCCcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCC
Q 039678 359 ETADFARKWVPFCKKYSIEPRAPEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDG 438 (1015)
Q Consensus 359 Eaa~FA~~WvPFCkk~~iepR~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dg 438 (1015)
|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++|+++|+|+||
T Consensus 404 EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~dg 483 (1079)
T PLN02638 404 ETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDG 483 (1079)
T ss_pred HHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcchhheeccCCCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCC
Q 039678 439 TPWPGNNTQDHPGMIQVFLGREGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYV 518 (1015)
Q Consensus 439 t~w~~~~~~dHp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~ 518 (1015)
++|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+
T Consensus 484 t~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYi 563 (1079)
T PLN02638 484 TPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYI 563 (1079)
T ss_pred ccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhcCCCCCcceEEEecCccccCCCcccchhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCC
Q 039678 519 NNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDKSDRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEP 598 (1015)
Q Consensus 519 ~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p 598 (1015)
|||++||+||||||||+.|+++|||||||+|+|+|++|||+|++++|||++|+|+||+|||+||||||+|||+||||++|
T Consensus 564 Nns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALYG~~p 643 (1079)
T PLN02638 564 NNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEP 643 (1079)
T ss_pred CchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhcCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCC--CCCCCCCCCCCCcccchhh-hccchhhH------H-----HHhhhh-------c--chhhhhhhhhhhhhhhh
Q 039678 599 PKAAK--RPRMGTCGCCPCFRRQKQY-QKNSKANV------I-----REAANL-------E--GMEENKEHLLSQMNSER 655 (1015)
Q Consensus 599 ~~~~~--~~~~~~~~~~~c~~~~~~~-~~~~~~~~------~-----~~~~~~-------~--~~~~~~~~~~~~~~~~~ 655 (1015)
|...+ .+.. +++||+..++. ++.+++.. + ...++. + ..+++++.++++.++++
T Consensus 644 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1079)
T PLN02638 644 PIKPKHKKPGF----LSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEK 719 (1079)
T ss_pred ccccccccccc----ccccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhhh
Confidence 87532 2221 22355553322 11111000 0 001111 1 13446677889999999
Q ss_pred hcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCC
Q 039678 656 KFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPK 735 (1015)
Q Consensus 656 ~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~ 735 (1015)
+||+|++|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+|+|+|||+.||++||++||||+|++|.
T Consensus 720 ~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P~ 799 (1079)
T PLN02638 720 RFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPK 799 (1079)
T ss_pred hccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCCC
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccccCCCCHHHHHHHhHHhhccchhHhhhcCCcccccccCCCCChhhhHHhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 039678 736 RSAFKGSAPINLSDRLNQALRWALGSVEIFFSRHNPICYGCKEGKIKFLERFAYINTTIYPFTSIPLLAYCLLPAICLLT 815 (1015)
Q Consensus 736 ~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~Llt 815 (1015)
++||.|+||+|+.+++.||+|||+|++||++++++|+++|++ ++|+++||++|+++++||++++++++|+++|++||++
T Consensus 800 r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~-~rL~l~QRL~Yl~~~~yp~~sip~liY~llP~l~Ll~ 878 (1079)
T PLN02638 800 RPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG-GRLKWLERFAYVNTTIYPITSIPLLLYCTLPAVCLLT 878 (1079)
T ss_pred chHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 889999999999999999999999999999999999998764 4699999999999999999999999999999999999
Q ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhcccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCceeCcC
Q 039678 816 DKFIMPEMSAFSGLLLVALFVSFFASGILELRWSGVTIEEWWRNEQFWVIGGISSHLFAVFQGLAKILTKNDTIFTVTFK 895 (1015)
Q Consensus 816 G~~i~p~~s~~~~~~fl~lfls~~~~~~Le~rw~g~si~~wWrneqfW~I~~~sa~l~av~~allk~L~g~~~~F~VTpK 895 (1015)
|++++|.++++++++|+++|++++++++||++|+|+++++||||||||+|+++|+|+||++++++|+|++++++|.||+|
T Consensus 879 G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~~F~VTsK 958 (1079)
T PLN02638 879 GKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSK 958 (1079)
T ss_pred CCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcccceeccc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-cccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 039678 896 LFDD-KEDKELYNFKWTALLIPPTTVLIINLVGIVAGITDAINTGYEAMRPLIGKLFFVFWVISHLYPFLKGLMGRQNRT 974 (1015)
Q Consensus 896 ~~~~-~~~~~ly~f~ws~l~iP~~~LlllnLiaiv~Gi~~~i~~~~~~w~~l~g~lf~~~Wvi~~l~Pfl~gL~gR~~r~ 974 (1015)
..++ +.++++|+|+||++++|+++|+++|++|+++|+++++++++++|+++++++|+++||++|+|||+||||||++|+
T Consensus 959 ~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl~gR~~r~ 1038 (1079)
T PLN02638 959 ASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT 1038 (1079)
T ss_pred cccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 8764 357899999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhheeeccCccccCCCCCcccCCCC
Q 039678 975 PTIVVIWSILLASIFSLVWMRIDPFVIRARGPDPKQCGINC 1015 (1015)
Q Consensus 975 P~~v~~~s~~la~~~~~l~v~i~~~~~~~~~~~~~~~~~~~ 1015 (1015)
||||++||++||++||||||+|+||+++++||.+++||++|
T Consensus 1039 P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1039 PTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred CeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 99999999999999999999999999999999999999999
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=6.5e-291 Score=2564.57 Aligned_cols=969 Identities=66% Similarity=1.188 Sum_probs=888.4
Q ss_pred CCCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccccCCCCcCCC-CCccccccc
Q 039678 29 WKSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRIKGSPRVEGD-ADEEDIDDI 107 (1015)
Q Consensus 29 ~~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kgsp~v~gd-~~e~~~~~~ 107 (1015)
-++.++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||+++||+
T Consensus 10 ~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~ 89 (1044)
T PLN02915 10 RQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDF 89 (1044)
T ss_pred ccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhh
Confidence 3778999999999999999999999999999999999999999999999999999999999999999999 567888999
Q ss_pred ccccccccchhhhhcchhhhhhhccccccCCCCCCCCC---------CCCcCCCCCCCccccCC--CCCccCCCCCCCCc
Q 039678 108 EHEFNIEDENKIVHNENAKAEAMLHGKLSYGRGPNDDE---------YTPVDGEFPIQQKLSSS--LHKRVHPYPDSGGA 176 (1015)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 176 (1015)
||||+|..+++ . +.+.++++++|++.+... ++ .+++++....-..+ |||. .|
T Consensus 90 ~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~--------~w 152 (1044)
T PLN02915 90 EDEFQIKSPQD----H----EPVHQNVFAGSENGDYNAQQWRPGGPAFS-STGSVAGKDLEAEREGYGNA--------EW 152 (1044)
T ss_pred hhhhccccccc----c----chhhhhhccCCCCccccccccCCCCcccc-CCCCcCCCCcCccccCcCCH--------HH
Confidence 99999964331 1 127777788877754211 11 12333311111111 5555 39
Q ss_pred chhhhHHhhhcCccccccCC--C-----CCCCCcccccCCCCceeeeecCCCCcchhHHHHHHHHHHHHHHHHHhhccCC
Q 039678 177 KETTDDWKLQQGNLVQETNG--T-----KDSDTSMIDESRQPLSRKVPIATSKINPYRMVVAARLVIMVLFLQYRIMNPV 249 (1015)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~ 249 (1015)
|||||+||+||+|++.+.++ + +++|.++|+++++||+||+++++++++|||++++++|+++++||+||++|++
T Consensus 153 k~r~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~ 232 (1044)
T PLN02915 153 KDRVDKWKTRQEKRGLVNKDDSDDGDDKGDEEEYLLAEARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPA 232 (1044)
T ss_pred HHHHHHHHhhhhhhccccccccCCCCCCCCcccccccccCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 99999999999876555432 1 2357788999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHhhhhhcCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHH
Q 039678 250 NDAVGLWLTSVICEIWFGFSWILDQFPKWLPIQRETYLERLSIRYEREGEPNMLAPVDIFVTTVDPMKEPPLVTANTILS 329 (1015)
Q Consensus 250 ~~~~~~Wl~~~~~E~~f~~~wil~~~~kw~Pv~R~~~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEpp~v~~nTvls 329 (1015)
.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++|||+++++++||+|||||||+||.||||++|+|||||
T Consensus 233 ~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLS 312 (1044)
T PLN02915 233 YDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLS 312 (1044)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHccCccccccccccCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCcccccccccccccCCCchHHHHHHHHHHH
Q 039678 330 VLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEMYFSQKVDYLKDKVQPAFVKERRAMKR 409 (1015)
Q Consensus 330 ~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~yFs~~~d~~~~~~~~~f~~err~mkr 409 (1015)
|||+|||+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||
T Consensus 313 iLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKr 392 (1044)
T PLN02915 313 ILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKR 392 (1044)
T ss_pred HHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCCCCCCCCCCcEEEEecCCCCCCCCCCc
Q 039678 410 EYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGHDAEGNELPNLVYVSREKRPAFPHNKR 489 (1015)
Q Consensus 410 ~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~K 489 (1015)
||||||+|||+|+++++++|+++|+|+|||+|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+|
T Consensus 393 eYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~K 472 (1044)
T PLN02915 393 EYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKK 472 (1044)
T ss_pred HHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred hhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccCCCcccchhhhHHHhhhhh
Q 039678 490 AGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDKSDRYSNRNRVFFDIN 569 (1015)
Q Consensus 490 AGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~ 569 (1015)
|||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++
T Consensus 473 AGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~ 552 (1044)
T PLN02915 473 AGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDIN 552 (1044)
T ss_pred hhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCccccccccchhhhhhcCCCCCccCCCCCC----CCCCCCCCcccchhhhccchh-h---------------
Q 039678 570 MKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRM----GTCGCCPCFRRQKQYQKNSKA-N--------------- 629 (1015)
Q Consensus 570 ~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~----~~~~~~~c~~~~~~~~~~~~~-~--------------- 629 (1015)
|+|+||+|||+|+||||+|||+||||++||...+.+.+ ....|++||+.++++++..++ .
T Consensus 553 ~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1044)
T PLN02915 553 MKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRK 632 (1044)
T ss_pred cccccccCCcccccCCceeeeeeecCcCCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999876544432 112355577766653322100 0
Q ss_pred -----------------HHHHhhh-------hcchhh-hhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHH
Q 039678 630 -----------------VIREAAN-------LEGMEE-NKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALL 684 (1015)
Q Consensus 630 -----------------~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~ 684 (1015)
.+..+++ +||+++ ++++.+++++++++||+|++|++|++.+.+|.+...++++++
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l 712 (1044)
T PLN02915 633 KKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALI 712 (1044)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHH
Confidence 0001111 234444 777788999999999999999999999999999888899999
Q ss_pred HHHHHhhcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhH
Q 039678 685 KEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEI 764 (1015)
Q Consensus 685 ~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQi 764 (1015)
+||+|||||+||++|+||+||||.|+|+|||+.||++||++||||+|++|.++||.|+||+|+.++++||+|||+|++||
T Consensus 713 ~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqI 792 (1044)
T PLN02915 713 KEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEI 792 (1044)
T ss_pred HHHHhccccCCCccCchhHhhCccccccccHHHHHHHHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred hhhcCCcccccccCCCCChhhhHHhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHH
Q 039678 765 FFSRHNPICYGCKEGKIKFLERFAYINTTIYPFTSIPLLAYCLLPAICLLTDKFIMPEMSAFSGLLLVALFVSFFASGIL 844 (1015)
Q Consensus 765 l~sk~~Pl~~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~i~p~~s~~~~~~fl~lfls~~~~~~L 844 (1015)
++++++|+++++. ++|+++||++|+++++||++|+++++|+++|++||++|++++|.++.+.+++|+++|++++++++|
T Consensus 793 f~sr~~Pl~~g~~-~~L~l~QRL~Yl~~~~yp~~slp~liY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lL 871 (1044)
T PLN02915 793 FMSRHCPLWYAYG-GKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVL 871 (1044)
T ss_pred HHhccCCcccccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999997663 569999999999999999999999999999999999999999988887778889999999999999
Q ss_pred HHHhcCcccchhcccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCceeCcCCCCCc--ccccccccccchhhHHHHHHHH
Q 039678 845 ELRWSGVTIEEWWRNEQFWVIGGISSHLFAVFQGLAKILTKNDTIFTVTFKLFDDK--EDKELYNFKWTALLIPPTTVLI 922 (1015)
Q Consensus 845 e~rw~g~si~~wWrneqfW~I~~~sa~l~av~~allk~L~g~~~~F~VTpK~~~~~--~~~~ly~f~ws~l~iP~~~Lll 922 (1015)
|++|+|+++++||||||||+|+++|+|+||++++++|+|++++++|+||+|+.+++ +++++|+|+||++++|++++++
T Consensus 872 E~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLg~se~~F~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttlll 951 (1044)
T PLN02915 872 ELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTSKAADDEADEFGELYLFKWTTLLIPPTTLII 951 (1044)
T ss_pred HHHhcCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCcceecCCccccchhhhccceeecceehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987643 5679999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCccc
Q 039678 923 INLVGIVAGITDAINTGYEAMRPLIGKLFFVFWVISHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLVWMRIDPFVIR 1002 (1015)
Q Consensus 923 lnLiaiv~Gi~~~i~~~~~~w~~l~g~lf~~~Wvi~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~~~~l~v~i~~~~~~ 1002 (1015)
+|++|+++|++++++++++.|+++++++|+++|+++|+|||++|||||++|+||||++||++||++|+||||+|+||+++
T Consensus 952 lNlvalv~Gi~~~i~~~~~~~g~l~~~l~~~~wvvv~lyPf~kgLmgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~ 1031 (1044)
T PLN02915 952 LNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPK 1031 (1044)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeehHHHHHHHHHHHHHHheeccccCC
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCC
Q 039678 1003 ARGPDPKQCGINC 1015 (1015)
Q Consensus 1003 ~~~~~~~~~~~~~ 1015 (1015)
++||++++|||+|
T Consensus 1032 ~~~~~~~~~~~~~ 1044 (1044)
T PLN02915 1032 QTGPILKQCGVEC 1044 (1044)
T ss_pred CCCccccccCCCC
Confidence 9999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=2.9e-279 Score=2453.31 Aligned_cols=948 Identities=63% Similarity=1.138 Sum_probs=862.0
Q ss_pred CCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccccCCCCcCCCCCccccccccc
Q 039678 30 KSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRIKGSPRVEGDADEEDIDDIEH 109 (1015)
Q Consensus 30 ~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kgsp~v~gd~~e~~~~~~~~ 109 (1015)
-..++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||||| |||++||+||
T Consensus 2 ~~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~ 69 (977)
T PLN02195 2 MESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVET 69 (977)
T ss_pred CcCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhh
Confidence 3568999999999999999999999999999999999999999999999999999998 5777899999
Q ss_pred ccccccchhhhhcchhhhhhhccccccCCCCCCCCCCCCcCCCCCC-CccccCCCCCccCCCCCCCCcchhhhHHhhhcC
Q 039678 110 EFNIEDENKIVHNENAKAEAMLHGKLSYGRGPNDDEYTPVDGEFPI-QQKLSSSLHKRVHPYPDSGGAKETTDDWKLQQG 188 (1015)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1015)
||+-+ .++.+ +++++|++.+..+ ++...+++ +..+..+|||. .||||||+||.||+
T Consensus 70 ~~~~~--------~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--------~wk~r~~~wk~~~~ 126 (977)
T PLN02195 70 KHSRN--------QSTMA-----SHLNDTQDVGIHA--RHISSVSTVDSELNDEYGNP--------IWKNRVESWKDKKN 126 (977)
T ss_pred hhccc--------hhhhh-----hhcccCcCCCCCC--ccccccccCCCcccCccCCH--------HHHHHHHHHHHhhh
Confidence 98421 12222 3455555432110 00001111 11223346766 49999999999997
Q ss_pred cccc--ccCC---C------CCCCCcccccCCCCceeeeecCCCCcchhHHHHHHHHHHHHHHHHHhhccCCCchhHHHH
Q 039678 189 NLVQ--ETNG---T------KDSDTSMIDESRQPLSRKVPIATSKINPYRMVVAARLVIMVLFLQYRIMNPVNDAVGLWL 257 (1015)
Q Consensus 189 ~~~~--~~~~---~------~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~~~~~Wl 257 (1015)
|++. +.++ + +++|.+ |||.++||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl 205 (977)
T PLN02195 127 KKKKSAKKKEAHKAQIPPEQQMEEKP-SADAYEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWL 205 (977)
T ss_pred hhccccccccccccCCCCccCCcccc-cccccCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 4432 2221 1 224566 49999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccchhHHHHhhhhhcCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCC
Q 039678 258 TSVICEIWFGFSWILDQFPKWLPIQRETYLERLSIRYEREGEPNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPV 337 (1015)
Q Consensus 258 ~~~~~E~~f~~~wil~~~~kw~Pv~R~~~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~ 337 (1015)
++++||+||+|+|+|+|++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+
T Consensus 206 ~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~ 285 (977)
T PLN02195 206 TSVICEIWFAFSWVLDQFPKWSPINRETYIDRLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPV 285 (977)
T ss_pred HHHHHHHHHHHHHHHhcccccccccceECHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCcccccccccccccCCCchHHHHHHHHHHHHHHHHHHH
Q 039678 338 DKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVR 417 (1015)
Q Consensus 338 ~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~r 417 (1015)
|||+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|
T Consensus 286 eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~R 365 (977)
T PLN02195 286 DKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVR 365 (977)
T ss_pred cceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHH
Q 039678 418 MNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALV 497 (1015)
Q Consensus 418 i~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNall 497 (1015)
||+|+++++++|+++|.|+||++|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+
T Consensus 366 Ie~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNall 445 (977)
T PLN02195 366 VNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALV 445 (977)
T ss_pred HHHHHhhcccCCcccccccCCccCCCCCCCCCcchhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHH
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred HHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccCCCcccchhhhHHHhhhhhhccccccC
Q 039678 498 RVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDKSDRYSNRNRVFFDINMKGLDGIQ 577 (1015)
Q Consensus 498 rvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~q 577 (1015)
||||+|||||||||||||||+|||++||+|||||+||+.|+++|||||||+|+|++++|+|+|++++|||++|+|+||+|
T Consensus 446 rvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglq 525 (977)
T PLN02195 446 RVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQ 525 (977)
T ss_pred HHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccchhhhhhcCCCCCccCCCCCCCCCCC-CCCcccchhhhccchhh----HHH-----Hhhhhc---ch-hhh
Q 039678 578 GPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGC-CPCFRRQKQYQKNSKAN----VIR-----EAANLE---GM-EEN 643 (1015)
Q Consensus 578 gp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~-~~c~~~~~~~~~~~~~~----~~~-----~~~~~~---~~-~~~ 643 (1015)
||+||||||+|||+||||++|+..++.++. ++.| ++||+.+++..+ +++. .++ .+.+.+ .. +++
T Consensus 526 GP~YvGTGC~fRR~ALyG~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (977)
T PLN02195 526 GPVYVGTGCVFNRQALYGYGPPSLPRLPKS-SSSSSSCCCPTKKKPEQ-DPSEIYRDAKREDLNAAIFNLREIDNYDEYE 603 (977)
T ss_pred CccccccCceeeehhhhccCcccccccccc-ccccccccccccccccc-cchhhccccccccccccccccccccccchhh
Confidence 999999999999999999998876443332 2222 234444433221 1111 010 011111 12 236
Q ss_pred hhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccchHHHHHHHH
Q 039678 644 KEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLH 723 (1015)
Q Consensus 644 ~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~ 723 (1015)
++..+++++++++||+|.+|++|++.+.+|.+....++++++||++|+||+||++|+||+||||.|||+|||+.||++||
T Consensus 604 ~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH 683 (977)
T PLN02195 604 RSMLISQMSFEKTFGLSSVFIESTLMENGGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMH 683 (977)
T ss_pred hhhhhhhhHHHHhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHH
Confidence 66788899999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhhcCCcccccccCCCCChhhhHHhhhhhhhhhhhHHHH
Q 039678 724 SRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFSRHNPICYGCKEGKIKFLERFAYINTTIYPFTSIPLL 803 (1015)
Q Consensus 724 ~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~l 803 (1015)
++||||+|++|.+++|.|+||+|+.+++.||+|||+|++||+++++||+++|+++++|+++||++|+++++||++|++++
T Consensus 684 ~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~l 763 (977)
T PLN02195 684 CRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLI 763 (977)
T ss_pred ccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999999999999999999999887667899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhcccchhhhhhhHHHHHHHHHHHHHHHH
Q 039678 804 AYCLLPAICLLTDKFIMPEMSAFSGLLLVALFVSFFASGILELRWSGVTIEEWWRNEQFWVIGGISSHLFAVFQGLAKIL 883 (1015)
Q Consensus 804 iylllP~l~LltG~~i~p~~s~~~~~~fl~lfls~~~~~~Le~rw~g~si~~wWrneqfW~I~~~sa~l~av~~allk~L 883 (1015)
+|+++|++||++|++++|.++.+++++|+++|++++++++||++|+|+++++||||||||+|+++|+||||++++++|+|
T Consensus 764 iY~~lP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvL 843 (977)
T PLN02195 764 AYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKML 843 (977)
T ss_pred HHHHHHHHHHHcCCeecccchHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeCcCCCCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHH
Q 039678 884 TKNDTIFTVTFKLFDDKEDKELYNFKWTALLIPPTTVLIINLVGIVAGITDAINTGYEAMRPLIGKLFFVFWVISHLYPF 963 (1015)
Q Consensus 884 ~g~~~~F~VTpK~~~~~~~~~ly~f~ws~l~iP~~~LlllnLiaiv~Gi~~~i~~~~~~w~~l~g~lf~~~Wvi~~l~Pf 963 (1015)
++++++|+||+|..++++++++|+|+||++++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||
T Consensus 844 ggs~~~F~VTsK~~dd~~~~~~Y~f~~S~l~iP~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf 923 (977)
T PLN02195 844 AGLDTNFTVTAKAADDTEFGELYMVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPF 923 (977)
T ss_pred cCCCccceeccccccccchhcceeccceehhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887889999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCccccCCCC-Cccc-CCCC
Q 039678 964 LKGLMGRQNRTPTIVVIWSILLASIFSLVWMRIDPFVIRARGPD-PKQC-GINC 1015 (1015)
Q Consensus 964 l~gL~gR~~r~P~~v~~~s~~la~~~~~l~v~i~~~~~~~~~~~-~~~~-~~~~ 1015 (1015)
+||||||++|+|+||++||++||++||||||+||||+++++||+ +++| |++|
T Consensus 924 ~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 924 LKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVGKTDTTTLSNNCISIDC 977 (977)
T ss_pred HHHHhccCCCCCeeehHHHHHHHHHHHHHHeeccccccCCCCCchhhccCCCCC
Confidence 99999999999999999999999999999999999999999999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=5.5e-251 Score=2221.50 Aligned_cols=941 Identities=48% Similarity=0.900 Sum_probs=823.9
Q ss_pred cccccccccc---CceEE--EeccCCCCCCCCCCCCccccc--cCccccccCCCCeeeccCCCCCccchhhhHHHHhhCC
Q 039678 4 NAILFAGSHN---RNELV--LIHNHEEPKPWKSLDGQVCEI--CGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGT 76 (1015)
Q Consensus 4 ~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~c~~--c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~ 76 (1015)
|++||||||| |+|+| +|+++.+|+++++.+++.|.+ |+.+++.|++|++..+| ||+|+|||+||-++.++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 166 (1135)
T PLN02248 89 SNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG- 166 (1135)
T ss_pred ccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-
Confidence 7899999999 99999 899988999999999999999 99999999999999999 999999999999999996
Q ss_pred CCCCCCccccccccCCCCcCCCCCcccccccccccccccchhhhhcchhhhhhhc---cccccCCCCCCCCCCCCcCCCC
Q 039678 77 QLCPQCKTRYKRIKGSPRVEGDADEEDIDDIEHEFNIEDENKIVHNENAKAEAML---HGKLSYGRGPNDDEYTPVDGEF 153 (1015)
Q Consensus 77 ~~Cp~Ckt~ykr~kgsp~v~gd~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 153 (1015)
+.||+||++||.+ |+++++ +|.++ +..+++.+.. ..+++..+. ......+|+|||
T Consensus 167 ~~~~~~~~~~~~~--------~~~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 224 (1135)
T PLN02248 167 GICPGCKEPYKVT--------DLDDEV-PDESS------------GALPLPPPGGSKMDRRLSLMKS-NSLLMRSQTGDF 224 (1135)
T ss_pred CCCCCCccccccc--------cccccc-ccccc------------ccccCCCCCCcccccccccccc-cchhccCCCCCC
Confidence 8999999999865 333222 22111 1222222211 111111111 011123689999
Q ss_pred CCCc-cccCC----CCCccCCCCCCCCcchhhhHHhhhcCccccccCCCCC-CCCcccccCCCCceeeeecCCCCcchhH
Q 039678 154 PIQQ-KLSSS----LHKRVHPYPDSGGAKETTDDWKLQQGNLVQETNGTKD-SDTSMIDESRQPLSRKVPIATSKINPYR 227 (1015)
Q Consensus 154 ~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~k~~~~~~~~~~yR 227 (1015)
||++ +++|+ |||++ |++ +.. ...++++ ....+||++++||+||+++++++++|||
T Consensus 225 ~~~~w~~~~~~~~~~~~~~--------~~~-------~~~----~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~il~pyR 285 (1135)
T PLN02248 225 DHNRWLFETKGTYGYGNAV--------WPK-------DDG----YGDDGGGGGPGEFMDKPWRPLTRKVKISAAILSPYR 285 (1135)
T ss_pred CCceeeeeccccccccccc--------Ccc-------ccc----cCCCCCccccccccccCCCCceeeeecCcccccHHH
Confidence 9999 89988 68997 987 221 1111121 1225799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHhhhhhcCC-----CCCC
Q 039678 228 MVVAARLVIMVLFLQYRIMNPVNDAVGLWLTSVICEIWFGFSWILDQFPKWLPIQRETYLERLSIRYEREG-----EPNM 302 (1015)
Q Consensus 228 ~~i~~~l~~l~~yl~wRi~~~~~~~~~~Wl~~~~~E~~f~~~wil~~~~kw~Pv~R~~~~drL~~r~~~~~-----~~~~ 302 (1015)
++++++|+++++||+||++|++.++.|+|+++++||+||+|+|+|+|++||+||+|.||+|||++|||.|+ ++++
T Consensus 286 l~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~ 365 (1135)
T PLN02248 286 LLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSD 365 (1135)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccccccccCHHHHHHHhccccccCCCCccc
Confidence 99999999999999999999998999999999999999999999999999999999999999999998653 4678
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCcc
Q 039678 303 LAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPE 382 (1015)
Q Consensus 303 lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe 382 (1015)
||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+||||||||+|||||||
T Consensus 366 LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe 445 (1135)
T PLN02248 366 LPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPE 445 (1135)
T ss_pred CCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------------hcCCCccc
Q 039678 383 MYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAK------------------------------SRMIPQDG 432 (1015)
Q Consensus 383 ~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~------------------------------~~~vp~~~ 432 (1015)
+||++|.|+++++.+|+|++|||+|||||||||+|||+|++. ++++|+++
T Consensus 446 ~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~ 525 (1135)
T PLN02248 446 SYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKAT 525 (1135)
T ss_pred HHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccchhHHHHhhhhhhhhcccccccccccccce
Confidence 999999999999999999999999999999999999999641 24578899
Q ss_pred ccccCCCCCCCCC--------CCCCcchhheeccCCC------------CCCC--CCCCCCcEEEEecCCCCCCCCCCch
Q 039678 433 WIMQDGTPWPGNN--------TQDHPGMIQVFLGREG------------GHDA--EGNELPNLVYVSREKRPAFPHNKRA 490 (1015)
Q Consensus 433 w~m~dgt~w~~~~--------~~dHp~iiqv~~~~~g------------~~d~--~~~~lP~lvYvsRekrPg~~hh~KA 490 (1015)
| |+|||+|||+| ++|||+|||||+++++ ..|. .+.+||+||||||||||||+||+||
T Consensus 526 w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KA 604 (1135)
T PLN02248 526 W-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKA 604 (1135)
T ss_pred e-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccccccccccceeEEEecccCCCCCccccc
Confidence 9 99999999994 4699999999998754 1122 2448999999999999999999999
Q ss_pred hhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccCCCcccchhhhHHHhhhhhh
Q 039678 491 GAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDKSDRYSNRNRVFFDINM 570 (1015)
Q Consensus 491 GALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~ 570 (1015)
||||+|+||||+|||||||||||||||+|||++||+||||||||+ |+++|||||||+|+|+|++|||+|++++|||++|
T Consensus 605 GAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~-g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~ 683 (1135)
T PLN02248 605 GAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG-GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNM 683 (1135)
T ss_pred chhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-CCceEEEcCCcccCCCCCCCccCCcceeeeeeee
Confidence 999999999999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred ccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhh
Q 039678 571 KGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQ 650 (1015)
Q Consensus 571 ~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (1015)
+|+||+|||+||||||+|||+||||++||+.++.++. |++||+.++++++.+.... . . .+..++ ...++.
T Consensus 684 ~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~-~--~~~~~~--~~~~~~ 753 (1135)
T PLN02248 684 RALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGC----FGSCKFTKKKKKETSASEP-E-E--QPDLED--DDDLEL 753 (1135)
T ss_pred ccccccCCccccccCceeeehhhcCcCCccccccccc----ccccccccccccccccccc-c-c--cccccc--cchhhh
Confidence 9999999999999999999999999999876544332 3445554443322110000 0 0 000001 112456
Q ss_pred hhhhhhcCchhhhHhhhhh-hhCCCCC-------------------CCchHHHHHHHHHhhcccccccCccccccccccc
Q 039678 651 MNSERKFGQSAIFVTSTLV-EQGGVPA-------------------SSSREALLKEAIHVMSCDYEDKTEWGTELGWIYG 710 (1015)
Q Consensus 651 ~~~~~~fG~s~~f~~S~l~-e~GG~p~-------------------~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~yg 710 (1015)
..++++||+|..|++|+.. +.+|.+. ...++++++||++|+||+||++|+||+||||.|+
T Consensus 754 ~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YG 833 (1135)
T PLN02248 754 SLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYG 833 (1135)
T ss_pred hhhhhhhccchhhhhhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeec
Confidence 7789999999999999953 2232221 1235789999999999999999999999999999
Q ss_pred cccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhhcCCcccccccCCCCChhhhHHhh
Q 039678 711 SVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFSRHNPICYGCKEGKIKFLERFAYI 790 (1015)
Q Consensus 711 svTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~~L~l~QRL~Yl 790 (1015)
|+|||+.||++||++||||+||++.+++|.|+||+|+.++++||+|||+|++||++++++|+++ +++|+++||++|+
T Consensus 834 SvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~---~~~Lsl~QRL~Yl 910 (1135)
T PLN02248 834 SVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA---SRRLKFLQRIAYL 910 (1135)
T ss_pred ceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCcccc---CCCCCHHHHHHHH
Confidence 9999999999999999999999988999999999999999999999999999999999999885 4579999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhcccchhhhhhhHHH
Q 039678 791 NTTIYPFTSIPLLAYCLLPAICLLTDKFIMPEMSAFSGLLLVALFVSFFASGILELRWSGVTIEEWWRNEQFWVIGGISS 870 (1015)
Q Consensus 791 ~~~ly~l~sl~~liylllP~l~LltG~~i~p~~s~~~~~~fl~lfls~~~~~~Le~rw~g~si~~wWrneqfW~I~~~sa 870 (1015)
++++|||+++++++|+++|++||++|++++|+.+..++++++.+++++++++++|++|+|+++++||||||||+|+++++
T Consensus 911 ~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA 990 (1135)
T PLN02248 911 NVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSA 990 (1135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhhhheeeehhhHH
Confidence 99999999999999999999999999999998866555556566788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCceeCcCCCCCc---ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhH
Q 039678 871 HLFAVFQGLAKILTKNDTIFTVTFKLFDDK---EDKELYNFKWTALLIPPTTVLIINLVGIVAGITDAINTGYEAMRPLI 947 (1015)
Q Consensus 871 ~l~av~~allk~L~g~~~~F~VTpK~~~~~---~~~~ly~f~ws~l~iP~~~LlllnLiaiv~Gi~~~i~~~~~~w~~l~ 947 (1015)
+++|++++++|+|++++++|+||+|..+++ .++++|+|+||++++|+++++++|++|+++|++|++.++++.|+.++
T Consensus 991 ~L~A~l~aiLKvLggs~~~F~VTsK~~~~d~~~~~a~ly~f~wS~L~iP~ttl~llNLvAivvGv~R~i~g~~~~~~~l~ 1070 (1135)
T PLN02248 991 HLAAVLQGLLKVIAGIEISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLL 1070 (1135)
T ss_pred HHHHHHHHHHHHhcCccccceeCCcccccccccccchheecCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhH
Confidence 999999999999999999999999987643 46889999999999999999999999999999999988788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCccc
Q 039678 948 GKLFFVFWVISHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLVWMRIDPFVIR 1002 (1015)
Q Consensus 948 g~lf~~~Wvi~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~~~~l~v~i~~~~~~ 1002 (1015)
+++|+++|+++|+|||+||||||++|+|+||++||++|++++|||||+|+||+..
T Consensus 1071 g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~~~~~~~~ 1125 (1135)
T PLN02248 1071 GGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVAISPPSGA 1125 (1135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHHHHHHHHHHHHHheEeccccCc
Confidence 9999999999999999999999999999999999999999999999999999854
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=9.1e-217 Score=1881.03 Aligned_cols=702 Identities=65% Similarity=1.191 Sum_probs=666.1
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccccc
Q 039678 306 VDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEMYF 385 (1015)
Q Consensus 306 VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~yF 385 (1015)
|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|++|||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCCCC
Q 039678 386 SQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGHDA 465 (1015)
Q Consensus 386 s~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~d~ 465 (1015)
+++.|+++++.+|+|++||++|||||||||+|||+++++.+++|+++|+|+||++|||++++|||+||||+++++|+.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEec
Q 039678 466 EGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQF 545 (1015)
Q Consensus 466 ~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~ 545 (1015)
+|++||+||||||||||+|+||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCcccchhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhcc
Q 039678 546 PQRFDGIDKSDRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKN 625 (1015)
Q Consensus 546 PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~ 625 (1015)
||+|+|++++|+|+|++++||+++|+|+||+|||+|+||||+|||+||||++|+...+..+... .|++||++++|+++.
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~-~~~~~c~~~~k~~~~ 319 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTC-CCCSCCFGRRKKKKS 319 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcce-eeeecccCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999998777665433 344455445444332
Q ss_pred chhhH---------HHHhhh-------hcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHH
Q 039678 626 SKANV---------IREAAN-------LEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIH 689 (1015)
Q Consensus 626 ~~~~~---------~~~~~~-------~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~ 689 (1015)
+++.. ...+++ .++.+++++..+++++|+++||+|++|++|+..+.|+.+...+++++|+||+|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~EA~~ 399 (720)
T PF03552_consen 320 KKKPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEEAIH 399 (720)
T ss_pred cccchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 22111 111222 22455688889999999999999999999999999999999999999999999
Q ss_pred hhcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhhcC
Q 039678 690 VMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFSRH 769 (1015)
Q Consensus 690 v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~ 769 (1015)
|+||+||++|+|||||||+|||+|||+.||++||++||||+||+|.++||.|.||+|+.+.+.|++|||.|++||+++||
T Consensus 400 V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~fSr~ 479 (720)
T PF03552_consen 400 VASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFFSRH 479 (720)
T ss_pred HhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeehhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCChhhhHHhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039678 770 NPICYGCKEGKIKFLERFAYINTTIYPFTSIPLLAYCLLPAICLLTDKFIMPEMSAFSGLLLVALFVSFFASGILELRWS 849 (1015)
Q Consensus 770 ~Pl~~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~i~p~~s~~~~~~fl~lfls~~~~~~Le~rw~ 849 (1015)
||+|+|+. ++|+++||++|++.++||++|+|+++|+++|++||++|++++|++++.++++|+++|++++++++||++|+
T Consensus 480 ~Pl~~g~~-~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~~ws 558 (720)
T PF03552_consen 480 CPLWYGYG-GRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEFRWS 558 (720)
T ss_pred CchhccCC-CCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999764 46999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhcccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCceeCcCCCC--CcccccccccccchhhHHHHHHHHHHHHH
Q 039678 850 GVTIEEWWRNEQFWVIGGISSHLFAVFQGLAKILTKNDTIFTVTFKLFD--DKEDKELYNFKWTALLIPPTTVLIINLVG 927 (1015)
Q Consensus 850 g~si~~wWrneqfW~I~~~sa~l~av~~allk~L~g~~~~F~VTpK~~~--~~~~~~ly~f~ws~l~iP~~~LlllnLia 927 (1015)
|+++++||||||||+|+++++|+||++++++|+|++++++|+||+|..+ ++++.++|.|+||++++|+++|+++|++|
T Consensus 559 G~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTllilNLva 638 (720)
T PF03552_consen 559 GVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLLILNLVA 638 (720)
T ss_pred cCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876 44578899999999999999999999999
Q ss_pred HHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCccccCCCC
Q 039678 928 IVAGITDAINTGYEAMRPLIGKLFFVFWVISHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLVWMRIDPFVIRARGPD 1007 (1015)
Q Consensus 928 iv~Gi~~~i~~~~~~w~~l~g~lf~~~Wvi~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~~~~l~v~i~~~~~~~~~~~ 1007 (1015)
+++|+++++++++++|+++++++|+++||++|+|||+||||||++|+||||++||++||++|+||||+||||+++++||+
T Consensus 639 ~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~~~~~ 718 (720)
T PF03552_consen 639 FVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKTTGPD 718 (720)
T ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 039678 1008 PK 1009 (1015)
Q Consensus 1008 ~~ 1009 (1015)
++
T Consensus 719 ~~ 720 (720)
T PF03552_consen 719 LK 720 (720)
T ss_pred CC
Confidence 75
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=4.2e-202 Score=1760.55 Aligned_cols=726 Identities=34% Similarity=0.638 Sum_probs=657.8
Q ss_pred cCCCCceeeeecCCCCcchhHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchh
Q 039678 207 ESRQPLSRKVPIATSKINPYRMVVAARLVIMVLFLQYRIMNPVNDAVGLWLTSVICEIWFGFSWILDQFPKWLPIQRETY 286 (1015)
Q Consensus 207 ~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~~~~~Wl~~~~~E~~f~~~wil~~~~kw~Pv~R~~~ 286 (1015)
.+.+||++|++++++. ||++.+++++++++||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.|+
T Consensus 6 ~~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~ 81 (756)
T PLN02190 6 SSLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPY 81 (756)
T ss_pred CCCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCC
Confidence 3557999999999983 899999999999999999999998887 689999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhh
Q 039678 287 LERLSIRYEREGEPNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARK 366 (1015)
Q Consensus 287 ~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~ 366 (1015)
||||++|++ +||+||||||||||.||||++|+|||||+||+|||+|||+|||||||+|++|||||.|||+|||+
T Consensus 82 p~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~ 155 (756)
T PLN02190 82 PDRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKI 155 (756)
T ss_pred cHHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhh
Confidence 999999983 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCC--CCCCCC
Q 039678 367 WVPFCKKYSIEPRAPEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDG--TPWPGN 444 (1015)
Q Consensus 367 WvPFCkk~~iepR~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dg--t~w~~~ 444 (1015)
||||||||+|||||||+||+++.+ ++..++|++||++|||||||||+|||+.. +...|.+.|+ .+|+++
T Consensus 156 WvPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~ 226 (756)
T PLN02190 156 WVPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNT 226 (756)
T ss_pred hcccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCC
Confidence 999999999999999999998643 33558999999999999999999999864 3456777655 689999
Q ss_pred CCCCCcchhheeccCCCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHH
Q 039678 445 NTQDHPGMIQVFLGREGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAV 524 (1015)
Q Consensus 445 ~~~dHp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~L 524 (1015)
+++|||+||||+++++|+ +.++++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++
T Consensus 227 ~~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~ 305 (756)
T PLN02190 227 KPNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVV 305 (756)
T ss_pred CCCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHH
Confidence 999999999999999775 4478999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCC-cceEEEecCccccCCCcccchhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCC
Q 039678 525 REAMCFLMDPQTG-KRVCYVQFPQRFDGIDKSDRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAK 603 (1015)
Q Consensus 525 r~amcff~Dp~~g-~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~ 603 (1015)
|+||||||||+.+ +++|||||||+|+ |+|+|++++|||++|+|+||+|||+|+||||+|||+||||++||...+
T Consensus 306 r~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~ 380 (756)
T PLN02190 306 RQAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLED 380 (756)
T ss_pred HHhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCcccccc
Confidence 9999999999744 5899999999998 889999999999999999999999999999999999999999876433
Q ss_pred CCCCCCCCCCCCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCC-CCchHH
Q 039678 604 RPRMGTCGCCPCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPA-SSSREA 682 (1015)
Q Consensus 604 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~-~~~~~~ 682 (1015)
.....+ . . +++ .+++.+++++||+|+.|++|+..+..+.+. ..+.++
T Consensus 381 ~~~~~~--------~----------------------~-~~~-~~~~~~~~~~fg~s~~f~~s~~~~~~~~~~~~~~~~~ 428 (756)
T PLN02190 381 DGSLSS--------V----------------------A-TRE-FLAEDSLAREFGNSKEMVKSVVDALQRKPNPQNSLTN 428 (756)
T ss_pred cccccc--------c----------------------c-ccc-ccchhhhhhhcCCcHHHHHHHHHHhccCCCCccchHH
Confidence 211000 0 0 011 244567789999999999999876644333 334578
Q ss_pred HHHHHHHhhcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccch
Q 039678 683 LLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSV 762 (1015)
Q Consensus 683 ~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~l 762 (1015)
+++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|+++||.|.+|+++.+.+.||+|||+|++
T Consensus 429 ~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~l~~~L~Q~~RWa~G~l 508 (756)
T PLN02190 429 SIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPGGPEAMVQQRRWATGLI 508 (756)
T ss_pred HHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCCCChHHHhhhhhhHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCCcccccccCCCCChhhhHHhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHH
Q 039678 763 EIFFSRHNPICYGCKEGKIKFLERFAYINTTIYPFTSIPLLAYCLLPAICLLTDKFIMPEMSAFSGLLLVALFVSFFASG 842 (1015)
Q Consensus 763 Qil~sk~~Pl~~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~i~p~~s~~~~~~fl~lfls~~~~~ 842 (1015)
||+++++||+++++. ++|+++||++|++.++ |++|+|+++|+++|++||++|++++|.. .++.+++++++++++++
T Consensus 509 qI~fsr~nPl~~g~~-~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~--~~~~~~~~l~~~~~~~~ 584 (756)
T PLN02190 509 EVLFNKQSPLIGMFC-RKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG--VYLGIIVTLVGMHCLYT 584 (756)
T ss_pred HHHHhcCCCceeccC-CCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc--cHHHHHHHHHHHHHHHH
Confidence 999999999997553 4699999999999988 9999999999999999999999999975 45677888899999999
Q ss_pred HHHHHhcCcccchhcccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCceeCcCCCC-------------C--cc--cccc
Q 039678 843 ILELRWSGVTIEEWWRNEQFWVIGGISSHLFAVFQGLAKILTKNDTIFTVTFKLFD-------------D--KE--DKEL 905 (1015)
Q Consensus 843 ~Le~rw~g~si~~wWrneqfW~I~~~sa~l~av~~allk~L~g~~~~F~VTpK~~~-------------~--~~--~~~l 905 (1015)
++|++|+|+++++||||||||+|+++|+|+||++++++|+|++++++|+||+|..+ + ++ .+++
T Consensus 585 l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (756)
T PLN02190 585 LWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSGSGPSQGEDDGPNSDSGK 664 (756)
T ss_pred HHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccccccccccccccchhhhcce
Confidence 99999999999999999999999999999999999999999999999999999643 1 11 2678
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHh---cCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCC-CCcchhHHHH
Q 039678 906 YNFKWTALLIPPTTVLIINLVGIVAGITDAIN---TGYEAMRPLIGKLFFVFWVISHLYPFLKGLMGRQ-NRTPTIVVIW 981 (1015)
Q Consensus 906 y~f~ws~l~iP~~~LlllnLiaiv~Gi~~~i~---~~~~~w~~l~g~lf~~~Wvi~~l~Pfl~gL~gR~-~r~P~~v~~~ 981 (1015)
|+|+||++++|+++++++|++|++.|+++.+. +..+.|+. ++++|+++|+++|+|||+||||+|. +|+|++|+++
T Consensus 665 f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~~-l~q~~~~~~vv~~~~P~~~gl~~kdkg~iP~s~~~~ 743 (756)
T PLN02190 665 FEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGSG-LAEACGCILVVMLFLPFLKGLFEKGKYGIPLSTLSK 743 (756)
T ss_pred eEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccc-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHH
Confidence 99999999999999999999999988887653 33345654 5999999999999999999999665 5899999999
Q ss_pred HHHHHHHHHHhhe
Q 039678 982 SILLASIFSLVWM 994 (1015)
Q Consensus 982 s~~la~~~~~l~v 994 (1015)
|++|+.+|+++.|
T Consensus 744 s~~l~~~f~~~~~ 756 (756)
T PLN02190 744 AAFLAVLFVVFSV 756 (756)
T ss_pred HHHHHHHHHhccC
Confidence 9999999999875
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1e-193 Score=1698.06 Aligned_cols=706 Identities=36% Similarity=0.685 Sum_probs=651.4
Q ss_pred cCCCCceeeeecCCCCcchhHHHHHHHHHHHHHHHHHhhccCCCch-hHHHHHHHHHHHHHHHHHHHhhcccccccccch
Q 039678 207 ESRQPLSRKVPIATSKINPYRMVVAARLVIMVLFLQYRIMNPVNDA-VGLWLTSVICEIWFGFSWILDQFPKWLPIQRET 285 (1015)
Q Consensus 207 ~~~~pl~~k~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~~-~~~Wl~~~~~E~~f~~~wil~~~~kw~Pv~R~~ 285 (1015)
....||+++++++++. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+||+|+|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 4567999999998874 6999999999999999999999876655 789999999999999999999999999999999
Q ss_pred hHHHHhhhhhcCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhh
Q 039678 286 YLERLSIRYEREGEPNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFAR 365 (1015)
Q Consensus 286 ~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~ 365 (1015)
|+|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||||++|||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997654 378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCC-----CC
Q 039678 366 KWVPFCKKYSIEPRAPEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDG-----TP 440 (1015)
Q Consensus 366 ~WvPFCkk~~iepR~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dg-----t~ 440 (1015)
+||||||||+|||||||+||+++. ++|++||++|||||||||+|||+++++ +++|++ |.|.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999983 467899999999999999999999976 888876 555443 68
Q ss_pred CCCCC-CCCCcchhheeccCCCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCC
Q 039678 441 WPGNN-TQDHPGMIQVFLGREGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVN 519 (1015)
Q Consensus 441 w~~~~-~~dHp~iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~ 519 (1015)
|+++. ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||+++|+||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98775 68999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCcceEEEecCccccCCCcccchhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCCC
Q 039678 520 NSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDKSDRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPP 599 (1015)
Q Consensus 520 ~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~ 599 (1015)
||++|++|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998431
Q ss_pred ccCCCCCCCCCCCCCCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCc
Q 039678 600 KAAKRPRMGTCGCCPCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSS 679 (1015)
Q Consensus 600 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~ 679 (1015)
.... + . ..+++ .++...+..
T Consensus 393 ~~~~---------------------------------------~---------~-~~~~~-----------~~~~~~~~~ 412 (734)
T PLN02893 393 LILP---------------------------------------E---------I-PELNP-----------DHLVDKSIK 412 (734)
T ss_pred ccch---------------------------------------h---------h-hhccc-----------ccccccccc
Confidence 1000 0 0 00011 112233456
Q ss_pred hHHHHHHHHHhhcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhc
Q 039678 680 REALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWAL 759 (1015)
Q Consensus 680 ~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~ 759 (1015)
.+++++||++|+||.||++|+||+||||.|+|+|||++||++||++|||++|++|.+++|.|++|+|+.++++||+|||.
T Consensus 413 ~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~ 492 (734)
T PLN02893 413 SQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSV 492 (734)
T ss_pred hHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred cchhHhhhcCCcccccccCCCCChhhhHHhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHH
Q 039678 760 GSVEIFFSRHNPICYGCKEGKIKFLERFAYINTTIYPFTSIPLLAYCLLPAICLLTDKFIMPEMSAFSGLLLVALFVSFF 839 (1015)
Q Consensus 760 G~lQil~sk~~Pl~~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~i~p~~s~~~~~~fl~lfls~~ 839 (1015)
|++||+++++||+++|. ++|+++||++|++.++||++|+++++|+++|++||++|++++|+++..++++++.++++++
T Consensus 493 G~lqI~~s~~nPl~~g~--~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p~~s~~~f~~yi~l~~s~~ 570 (734)
T PLN02893 493 GLLEVAFSKYSPITFGV--KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFPKASDPWFFLYIFLFLGAY 570 (734)
T ss_pred hhHHHHhhccCchhhcc--cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHH
Confidence 99999999999999754 4699999999999999999999999999999999999999999999889888889999999
Q ss_pred HHHHHHHHhcCcccchhcccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCceeCcCCCCCcc---c-cccccccc-chhh
Q 039678 840 ASGILELRWSGVTIEEWWRNEQFWVIGGISSHLFAVFQGLAKILTKNDTIFTVTFKLFDDKE---D-KELYNFKW-TALL 914 (1015)
Q Consensus 840 ~~~~Le~rw~g~si~~wWrneqfW~I~~~sa~l~av~~allk~L~g~~~~F~VTpK~~~~~~---~-~~ly~f~w-s~l~ 914 (1015)
+++++|++|+|.++++|||+||||+|.++++++++++++++|.|++++++|+||+|+.++++ + .++|+|+| |+++
T Consensus 571 ~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~~~~~~y~~~~f~f~~~spl~ 650 (734)
T PLN02893 571 GQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQSKRYEQGIFEFGVSSPMF 650 (734)
T ss_pred HHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCcccccccccccceeeecccchhH
Confidence 99999999999999999999999999999999999999999999999999999999876432 2 48999995 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCCC--CcchhHHHHHHHHHHHHHHh
Q 039678 915 IPPTTVLIINLVGIVAGITDAINTGYEAMRPLIGKLFFVFWVISHLYPFLKGLMGRQN--RTPTIVVIWSILLASIFSLV 992 (1015)
Q Consensus 915 iP~~~LlllnLiaiv~Gi~~~i~~~~~~w~~l~g~lf~~~Wvi~~l~Pfl~gL~gR~~--r~P~~v~~~s~~la~~~~~l 992 (1015)
+|+++++++|++|+++|+++++.+ ..|+.+++++|+++|+++|+|||++||++|++ |+|++|++||++||.+++++
T Consensus 651 ip~ttl~llNl~a~v~Gi~~~~~~--~~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~P~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 651 LPLTTAAIINLVSFLWGIAQIFRQ--RNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKLPVKITLISIVLAWALYLA 728 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 35788999999999999999999999999986 89999999999999888765
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=3.9e-66 Score=627.64 Aligned_cols=491 Identities=25% Similarity=0.392 Sum_probs=387.1
Q ss_pred HHH-HHHHHHHHHHHHHHhhccCCCch----hHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHhhhhhcCCCCC
Q 039678 227 RMV-VAARLVIMVLFLQYRIMNPVNDA----VGLWLTSVICEIWFGFSWILDQFPKWLPIQRETYLERLSIRYEREGEPN 301 (1015)
Q Consensus 227 R~~-i~~~l~~l~~yl~wRi~~~~~~~----~~~Wl~~~~~E~~f~~~wil~~~~kw~Pv~R~~~~drL~~r~~~~~~~~ 301 (1015)
|++ +++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|... ..|..++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPV--------PLPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc--------CCCCCcc
Confidence 554 55666778999999999987643 2356778999999999988888888888877542 1233456
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCc
Q 039678 302 MLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAP 381 (1015)
Q Consensus 302 ~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~P 381 (1015)
.+|+|||+||||| |++.++.+|+.+++++|||.||+.|||+|||+++-|.....+++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~-------------------- 185 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQ-------------------- 185 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhh--------------------
Confidence 7999999999999 99999999999999999999999999999999886543222111
Q ss_pred ccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCC
Q 039678 382 EMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREG 461 (1015)
Q Consensus 382 e~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g 461 (1015)
.|. ++..++++ +++++
T Consensus 186 --------------------~~~---~~~~~~~~----~l~~~------------------------------------- 201 (713)
T TIGR03030 186 --------------------AEA---AQRREELK----EFCRK------------------------------------- 201 (713)
T ss_pred --------------------hhh---hhhHHHHH----HHHHH-------------------------------------
Confidence 000 00011221 22210
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhh-cCCCCCcce
Q 039678 462 GHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFL-MDPQTGKRV 540 (1015)
Q Consensus 462 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff-~Dp~~g~~v 540 (1015)
.++.|+.|++ ++|+||||||++++. ++||||+++|||++ ++|++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 0388999988 788999999999996 78999999999999 5899999999988 588 89
Q ss_pred EEEecCccccCCCcc-------cchhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCC
Q 039678 541 CYVQFPQRFDGIDKS-------DRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCC 613 (1015)
Q Consensus 541 a~VQ~PQ~F~nid~~-------D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 613 (1015)
|+||+||.|+|.++. +++.+++..||+.+++|+|.+++++++||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998753 34567888999999999999999999999999999988
Q ss_pred CCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcc
Q 039678 614 PCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSC 693 (1015)
Q Consensus 614 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc 693 (1015)
+++||+++
T Consensus 320 -------------------------------------------------------~~iGGf~~----------------- 327 (713)
T TIGR03030 320 -------------------------------------------------------DEIGGIAG----------------- 327 (713)
T ss_pred -------------------------------------------------------HHcCCCCC-----------------
Confidence 35676554
Q ss_pred cccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhhcCCccc
Q 039678 694 DYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFSRHNPIC 773 (1015)
Q Consensus 694 ~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~ 773 (1015)
++++||++++++|+++||+++|++++.. +|++|+|++++++||.||++|++|+++. .+|++
T Consensus 328 ----------------~~vtED~~l~~rL~~~G~~~~y~~~~~~--~g~~p~sl~~~~~Qr~RWa~G~~qi~~~-~~pl~ 388 (713)
T TIGR03030 328 ----------------ETVTEDAETALKLHRRGWNSAYLDRPLI--AGLAPETLSGHIGQRIRWAQGMMQIFRL-DNPLL 388 (713)
T ss_pred ----------------CCcCcHHHHHHHHHHcCCeEEEeccccc--cccCCCCHHHHHHHHHHHhcChHHHHhh-hCccc
Confidence 6899999999999999999999987664 8999999999999999999999999985 57887
Q ss_pred ccccCCCCChhhhHHhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHh-cCcc
Q 039678 774 YGCKEGKIKFLERFAYINTTIYPFTSIPLLAYCLLPAICLLTDKFIMPEMSAFSGLLLVALFVSFFASGILELRW-SGVT 852 (1015)
Q Consensus 774 ~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~i~p~~s~~~~~~fl~lfls~~~~~~Le~rw-~g~s 852 (1015)
+++|++.||++|+++++||+.+++.++|+++|++++++|..+++.... .+++.++++++.+++.+.| .|..
T Consensus 389 ----~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~----~~~~~~lp~~~~~~~~~~~~~~~~ 460 (713)
T TIGR03030 389 ----KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASAL----EILAYALPHMLHSLLTNSYLFGRV 460 (713)
T ss_pred ----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCHH----HHHHHHHHHHHHHHHHHHHHcCCe
Confidence 567999999999999999999999999999999999999998876322 2233446666777666443 4444
Q ss_pred cchhcccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCceeCcCCCCCcccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 039678 853 IEEWWRNEQFWVIGGISSHLFAVFQGLAKILTKNDTIFTVTFKLFDDKEDKELYNFKWTALLIPPTTVLIINLVGIVAGI 932 (1015)
Q Consensus 853 i~~wWrneqfW~I~~~sa~l~av~~allk~L~g~~~~F~VTpK~~~~~~~~~ly~f~ws~l~iP~~~LlllnLiaiv~Gi 932 (1015)
...||+ |. ..+...++.+...+.+++++++.+|+||||++..+.. .+ +.++.|+++++++|++|+++|+
T Consensus 461 ~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~----~~--~~~~~p~~~l~~l~~~~~~~~~ 529 (713)
T TIGR03030 461 RWPFWS-EV----YETVLAVYLLPPVLVTLLNPKKPKFNVTPKGELLDED----YF--SPLSRPYLILFALILAGLAFGL 529 (713)
T ss_pred ecchHH-HH----HHHHHHHHHHHHHHHHHhCcCCCCceecCCCcccccc----cc--chHHHHHHHHHHHHHHHHHHHH
Confidence 456664 32 2333334555566667789999999999999753321 02 2689999999999999999999
Q ss_pred HHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 039678 933 TDAINTGYEAMRPLIGKLFFVFWVISHLYPFLKGLM 968 (1015)
Q Consensus 933 ~~~i~~~~~~w~~l~g~lf~~~Wvi~~l~Pfl~gL~ 968 (1015)
++.+.++. ...+.+++.+|.++|++-..-++.
T Consensus 530 ~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~ 561 (713)
T TIGR03030 530 YRIYGYPI----ERGVLLVVLGWNLLNLILLGAALA 561 (713)
T ss_pred HHHhcCcc----ccchhhHHHHHHHHHHHHHHHHHH
Confidence 99864332 233557999999999987666554
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=9.9e-66 Score=625.14 Aligned_cols=473 Identities=25% Similarity=0.415 Sum_probs=374.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCc----hhHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHhhhhhcCCCCCCCC
Q 039678 229 VVAARLVIMVLFLQYRIMNPVND----AVGLWLTSVICEIWFGFSWILDQFPKWLPIQRETYLERLSIRYEREGEPNMLA 304 (1015)
Q Consensus 229 ~i~~~l~~l~~yl~wRi~~~~~~----~~~~Wl~~~~~E~~f~~~wil~~~~kw~Pv~R~~~~drL~~r~~~~~~~~~lP 304 (1015)
++++.+++.++|++||++.+++. +..+.++++++|+++.++.++..+..+.|..|.+. +.|...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCCC
Confidence 56677888999999999998763 24456778999999999889988888888877532 1233346789
Q ss_pred CeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCcccc
Q 039678 305 PVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEMY 384 (1015)
Q Consensus 305 ~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~y 384 (1015)
+|||+||||| ||+.++.+|+.+++++|||.+|+.|||+|||+++- +.++++
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~-------t~~la~------------------- 311 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREE-------FRQFAQ------------------- 311 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChH-------HHHHHH-------------------
Confidence 9999999999 99999999999999999999999999999999862 111110
Q ss_pred cccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCCC
Q 039678 385 FSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGHD 464 (1015)
Q Consensus 385 Fs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~d 464 (1015)
+
T Consensus 312 ----------------------------~--------------------------------------------------- 312 (852)
T PRK11498 312 ----------------------------E--------------------------------------------------- 312 (852)
T ss_pred ----------------------------H---------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhh-cCCCCCcceEEE
Q 039678 465 AEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFL-MDPQTGKRVCYV 543 (1015)
Q Consensus 465 ~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff-~Dp~~g~~va~V 543 (1015)
.++.|++|++ +.|+||||+|++++. ++||||+++|||++ +++++|+++|.+| .|| ++|+|
T Consensus 313 ------~~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 313 ------VGVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred ------CCcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEE
Confidence 0278899887 678999999999996 79999999999999 6999999999865 788 89999
Q ss_pred ecCccccCCCccc-------chhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCc
Q 039678 544 QFPQRFDGIDKSD-------RYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCF 616 (1015)
Q Consensus 544 Q~PQ~F~nid~~D-------~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~ 616 (1015)
|+||.|+|.|+.. .+.+++..||+..++|+|.+++++++||++++||+||
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL----------------------- 430 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL----------------------- 430 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH-----------------------
Confidence 9999999987643 2456788999999999999999999999999999987
Q ss_pred ccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhccccc
Q 039678 617 RRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYE 696 (1015)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE 696 (1015)
+|+||+++
T Consensus 431 ----------------------------------------------------eeVGGfd~-------------------- 438 (852)
T PRK11498 431 ----------------------------------------------------DEIGGIAV-------------------- 438 (852)
T ss_pred ----------------------------------------------------HHhcCCCC--------------------
Confidence 36787765
Q ss_pred ccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhhcCCcccccc
Q 039678 697 DKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFSRHNPICYGC 776 (1015)
Q Consensus 697 ~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~ 776 (1015)
+++|||++++++|+++||+++|++++.+ .|++|+|++++++||.||++|++|+++ +++|++
T Consensus 439 -------------~titED~dlslRL~~~Gyrv~yl~~~~a--~glaPesl~~~~~QR~RWarG~lQi~r-~~~pl~--- 499 (852)
T PRK11498 439 -------------ETVTEDAHTSLRLHRRGYTSAYMRIPQA--AGLATESLSAHIGQRIRWARGMVQIFR-LDNPLT--- 499 (852)
T ss_pred -------------CccCccHHHHHHHHHcCCEEEEEeccce--eEECCCCHHHHHHHHHHHHHHHHHHHH-HhChhc---
Confidence 5899999999999999999999987765 799999999999999999999999998 478986
Q ss_pred cCCCCChhhhHHhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHh-cCcccch
Q 039678 777 KEGKIKFLERFAYINTTIYPFTSIPLLAYCLLPAICLLTDKFIMPEMSAFSGLLLVALFVSFFASGILELRW-SGVTIEE 855 (1015)
Q Consensus 777 ~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~i~p~~s~~~~~~fl~lfls~~~~~~Le~rw-~g~si~~ 855 (1015)
+++|++.||++|+++++|++.+++.++|+++|++|+++|+.++.... . .+++.+++.++...+...| +|.....
T Consensus 500 -~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~---~-~i~~y~lP~~~~~~l~~~~~~g~~r~~ 574 (852)
T PRK11498 500 -GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPA---L-MIALFVLPHMIHASLTNSRIQGKYRHS 574 (852)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCCh---H-HHHHHHHHHHHHHHHHHHHhcCcchHh
Confidence 56899999999999999999999999999999999999988775422 1 1223345555555454433 2322223
Q ss_pred hcccchhhhhhhHHHHHHHHHHHHHHHHcCCCCCceeCcCCCCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 039678 856 WWRNEQFWVIGGISSHLFAVFQGLAKILTKNDTIFTVTFKLFDDKEDKELYNFKWTALLIPPTTVLIINLVGIVAGITDA 935 (1015)
Q Consensus 856 wWrneqfW~I~~~sa~l~av~~allk~L~g~~~~F~VTpK~~~~~~~~~ly~f~ws~l~iP~~~LlllnLiaiv~Gi~~~ 935 (1015)
||+ | ++..+.++.++ ...+..++++++.+|+||+|++..+.. .|+|. +..|+++++++|++|+++|+++.
T Consensus 575 ~ws-e---iye~v~a~~l~-~~~~~~ll~p~~~~F~VTpKg~~~~~~----~~~~~-~~~P~~~L~~L~l~gl~~g~~r~ 644 (852)
T PRK11498 575 FWS-E---IYETVLAWYIA-PPTTVALFNPHKGKFNVTAKGGLVEEE----YVDWV-ISRPYIFLVLLNLVGVAVGIWRY 644 (852)
T ss_pred HHH-H---HHHHHHHHHHH-HHHHHHHcCccCCCcccCCCCcccccc----ceehH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2 12333333333 334445788999999999998764331 25564 67899999999999999999998
Q ss_pred HhcCcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 039678 936 INTGYEAMRPLIGKLFFVFWVISHLYPFLKGLM 968 (1015)
Q Consensus 936 i~~~~~~w~~l~g~lf~~~Wvi~~l~Pfl~gL~ 968 (1015)
+.+.. ....+.+++.+|+++|+.-..-++.
T Consensus 645 ~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~~ 674 (852)
T PRK11498 645 FYGPP---NEILTVIVSLVWVFYNLIILGGAVA 674 (852)
T ss_pred HhCCc---ccchhhhhhHHHHHHHHHHHHHHHH
Confidence 75322 2234567899999999876655543
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=3.9e-43 Score=307.38 Aligned_cols=80 Identities=71% Similarity=1.513 Sum_probs=42.1
Q ss_pred CCCCCCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccccCCCCcCCCCCccccc
Q 039678 26 PKPWKSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRIKGSPRVEGDADEEDID 105 (1015)
Q Consensus 26 ~~~~~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kgsp~v~gd~~e~~~~ 105 (1015)
+||++++++|+||||||+||+++||++|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998876
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=4.5e-36 Score=361.64 Aligned_cols=358 Identities=17% Similarity=0.230 Sum_probs=245.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCCch---------hHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHhhhhh
Q 039678 225 PYRMVVAARLVIMVLFLQYRIMNPVNDA---------VGLWLTSVICEIWFGFSWILDQFPKWLPIQRETYLERLSIRYE 295 (1015)
Q Consensus 225 ~yR~~i~~~l~~l~~yl~wRi~~~~~~~---------~~~Wl~~~~~E~~f~~~wil~~~~kw~Pv~R~~~~drL~~r~~ 295 (1015)
..|++++...++...|..|+....+... ..+-.+++..+.+.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 3577777777788889999987654321 111222334444444444444333211 11110 0100000
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCChHHH----HHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhh
Q 039678 296 REGEPNMLAPVDIFVTTVDPMKEPPLVT----ANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFC 371 (1015)
Q Consensus 296 ~~~~~~~lP~VDvfV~T~dP~kEpp~v~----~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFC 371 (1015)
.+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++.+-.
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~---------------- 175 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA---------------- 175 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH----------------
Confidence 1123456899999999999 998754 5556677789998 589999999998873211
Q ss_pred hhcCCCCCCcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcc
Q 039678 372 KKYSIEPRAPEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPG 451 (1015)
Q Consensus 372 kk~~iepR~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~ 451 (1015)
.|+ +.|++++.+.
T Consensus 176 ------------------------------~e~----~~~~~L~~~~--------------------------------- 188 (691)
T PRK05454 176 ------------------------------AEE----AAWLELRAEL--------------------------------- 188 (691)
T ss_pred ------------------------------HHH----HHHHHHHHhc---------------------------------
Confidence 011 1233433210
Q ss_pred hhheeccCCCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhh
Q 039678 452 MIQVFLGREGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFL 531 (1015)
Q Consensus 452 iiqv~~~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff 531 (1015)
+ .-+++.|.+|++ |.|+||||+|.+++.++ .+++||+++|||+++ .+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~m-~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSLM-SGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCCC-CHHHHHHHHHHH
Confidence 0 012699999988 77889999999999866 678999999999995 899999999988
Q ss_pred c-CCCCCcceEEEecCccccCCCcc-cchhh-hHHHhhhhhhccccccCC--ccccccccchhhhhhcCCCCCccCCCCC
Q 039678 532 M-DPQTGKRVCYVQFPQRFDGIDKS-DRYSN-RNRVFFDINMKGLDGIQG--PMYVGTGCVFRRQALYGHEPPKAAKRPR 606 (1015)
Q Consensus 532 ~-Dp~~g~~va~VQ~PQ~F~nid~~-D~y~n-~~~vFfdi~~~gldg~qg--p~yvGTGcvfRR~ALyG~~p~~~~~~~~ 606 (1015)
. || ++|.||+|+.+.|.+.- .|..+ ...++.++...|++.||+ ..|+|+|+++||+|+..
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~----------- 310 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE----------- 310 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH-----------
Confidence 5 88 89999999999887531 22211 234556677888888773 56999999999999852
Q ss_pred CCCCCCCCCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHH
Q 039678 607 MGTCGCCPCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKE 686 (1015)
Q Consensus 607 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~e 686 (1015)
.||+|.-
T Consensus 311 ----------------------------------------------------------------~~glp~L--------- 317 (691)
T PRK05454 311 ----------------------------------------------------------------HCGLPPL--------- 317 (691)
T ss_pred ----------------------------------------------------------------hcCCccc---------
Confidence 1222210
Q ss_pred HHHhhcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhh
Q 039678 687 AIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFF 766 (1015)
Q Consensus 687 a~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~ 766 (1015)
. | .-||..++++||+++|.+|+++||+++|+++.. ..++++|+|+.++++||.||++|++|++.
T Consensus 318 ---------~-----g-~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~-~~~ee~P~tl~~~~~qr~RW~~G~lQ~l~ 381 (691)
T PRK05454 318 ---------P-----G-RGPFGGHILSHDFVEAALMRRAGWGVWLAPDLP-GSYEELPPNLLDELKRDRRWCQGNLQHLR 381 (691)
T ss_pred ---------c-----c-cCCCCCCcccHHHHHHHHHHHCCCEEEEcCccc-cccccCCCCHHHHHHHHHHHHhchHHHHH
Confidence 0 0 013555799999999999999999999997632 23899999999999999999999999886
Q ss_pred hcCCcccccccCCCCChhhhHHhhhhhhhhhhhHHHHHHHHH
Q 039678 767 SRHNPICYGCKEGKIKFLERFAYINTTIYPFTSIPLLAYCLL 808 (1015)
Q Consensus 767 sk~~Pl~~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~liylll 808 (1015)
. +. .+++++.+|+.|++.++.++.+...++++++
T Consensus 382 ~----l~----~~gl~~~~R~~~l~g~~~yl~~P~wll~l~l 415 (691)
T PRK05454 382 L----LL----AKGLHPVSRLHFLTGIMSYLSAPLWLLFLLL 415 (691)
T ss_pred H----HH----hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 4679999999999888877776555444433
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=1.3e-33 Score=305.20 Aligned_cols=182 Identities=21% Similarity=0.371 Sum_probs=146.8
Q ss_pred CcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhc-CCCCCcceEEEecCccc
Q 039678 471 PNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLM-DPQTGKRVCYVQFPQRF 549 (1015)
Q Consensus 471 P~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~-Dp~~g~~va~VQ~PQ~F 549 (1015)
++++|++|++ ++|+||||||+++...+ ++++||+++|||+. +.|++|++++.+|. || ++|.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4699999999 55679999999998533 58899999999999 58999999999886 88 89999999999
Q ss_pred cCCCcc-cch-hhhHHHhhhhhhccccccCC--ccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhcc
Q 039678 550 DGIDKS-DRY-SNRNRVFFDINMKGLDGIQG--PMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKN 625 (1015)
Q Consensus 550 ~nid~~-D~y-~n~~~vFfdi~~~gldg~qg--p~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~ 625 (1015)
.|.+.. .+. +-++..|..+.+.|++.|++ .+++||+.++||+||... |
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~---------------~------------- 187 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH---------------C------------- 187 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh---------------c-------------
Confidence 987642 111 11356677788888887765 578999999999998421 0
Q ss_pred chhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCcccccc
Q 039678 626 SKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTEL 705 (1015)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~ev 705 (1015)
.+.++||+.
T Consensus 188 -----------------------------------------~~~~i~g~g------------------------------ 196 (254)
T cd04191 188 -----------------------------------------ALPVLPGRP------------------------------ 196 (254)
T ss_pred -----------------------------------------CCccccCCC------------------------------
Confidence 011234321
Q ss_pred ccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchh
Q 039678 706 GWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVE 763 (1015)
Q Consensus 706 Gw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQ 763 (1015)
||...+++||+++|++++.+||+++|.+.... .++++|+|++++++||.||++|++|
T Consensus 197 ~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~-~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 197 PFGGHILSHDFVEAALMRRAGWEVRLAPDLEG-SYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred CCCCCeecHHHHHHHHHHHcCCEEEEccCCcc-eEeECCCCHHHHHHHHHHHHhhcCc
Confidence 46667999999999999999999999976552 2799999999999999999999998
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2e-30 Score=295.21 Aligned_cols=233 Identities=29% Similarity=0.449 Sum_probs=173.0
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCcc
Q 039678 303 LAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPE 382 (1015)
Q Consensus 303 lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe 382 (1015)
+|.|||+||++| |++.++.+|+.|++++|||. +.|+|.|||+++-|++-+.| ++.+
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~--------------~~~~----- 108 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEE--------------LGAE----- 108 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHH--------------HHhh-----
Confidence 699999999999 99999999999999999995 88999999999855443222 1100
Q ss_pred cccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCC
Q 039678 383 MYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGG 462 (1015)
Q Consensus 383 ~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~ 462 (1015)
| +..+
T Consensus 109 ----------------------------~--------------------------------------~~~~--------- 113 (439)
T COG1215 109 ----------------------------Y--------------------------------------GPNF--------- 113 (439)
T ss_pred ----------------------------c--------------------------------------Ccce---------
Confidence 0 0000
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEE
Q 039678 463 HDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCY 542 (1015)
Q Consensus 463 ~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~ 542 (1015)
+++|. ++ .+++|+||+|.++.. +.+|+|+++|||++ +.|++|++++..|.|+. .+|.
T Consensus 114 ---------~~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 114 ---------RVIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ---------EEEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 01111 22 678899999999986 56999999999999 68999999999999884 3479
Q ss_pred EecCccccCCCcccchhhh-----HHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcc
Q 039678 543 VQFPQRFDGIDKSDRYSNR-----NRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFR 617 (1015)
Q Consensus 543 VQ~PQ~F~nid~~D~y~n~-----~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~ 617 (1015)
+|.|+.+.+.++....+.. ...++-....+.++....++.|++.+|||+||
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL------------------------ 226 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSAL------------------------ 226 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHH------------------------
Confidence 9999998877541111111 11122111122222234455556655555555
Q ss_pred cchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccc
Q 039678 618 RQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYED 697 (1015)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~ 697 (1015)
++.||
T Consensus 227 ---------------------------------------------------~~~g~------------------------ 231 (439)
T COG1215 227 ---------------------------------------------------EEVGG------------------------ 231 (439)
T ss_pred ---------------------------------------------------HHhCC------------------------
Confidence 56674
Q ss_pred cCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhh
Q 039678 698 KTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFS 767 (1015)
Q Consensus 698 ~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~s 767 (1015)
|...++|||.+++++|+.+|||+.|++++.. ++++|+|+.++++||.||++|++|++..
T Consensus 232 ---------~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~--~~~~p~t~~~~~~Qr~RW~~g~~~~~~~ 290 (439)
T COG1215 232 ---------WLEDTITEDADLTLRLHLRGYRVVYVPEAIV--WTEAPETLKELWRQRLRWARGGLQVLLL 290 (439)
T ss_pred ---------CCCCceeccHHHHHHHHHCCCeEEEeecceE--eeeCcccHHHHHHHHHHHHcccceeeeh
Confidence 4457999999999999999999999987754 9999999999999999999999999974
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=4.2e-29 Score=289.12 Aligned_cols=231 Identities=24% Similarity=0.268 Sum_probs=171.8
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCC
Q 039678 301 NMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRA 380 (1015)
Q Consensus 301 ~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~ 380 (1015)
...|.|+|+||+|| |+ ..+.+|+.|++++||| ++.++|.|||+++-|.+.+.+.
T Consensus 72 ~~~p~vsViIP~yN---E~-~~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~~-------------------- 125 (444)
T PRK14583 72 KGHPLVSILVPCFN---EG-LNARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDAL-------------------- 125 (444)
T ss_pred CCCCcEEEEEEeCC---CH-HHHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHHH--------------------
Confidence 35799999999999 88 4578999999999999 5899999999987544332221
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCC
Q 039678 381 PEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGRE 460 (1015)
Q Consensus 381 Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~ 460 (1015)
.+
T Consensus 126 -----------------------------------------~~------------------------------------- 127 (444)
T PRK14583 126 -----------------------------------------LA------------------------------------- 127 (444)
T ss_pred -----------------------------------------HH-------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhh-cCCCCCcc
Q 039678 461 GGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFL-MDPQTGKR 539 (1015)
Q Consensus 461 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff-~Dp~~g~~ 539 (1015)
+.|++.++.++++ .+||+|+|++++. +++|||+++|+|++ ++|++|++.+..| .|| +
T Consensus 128 --------~~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 128 --------EDPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred --------hCCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 0123555554442 3599999999986 68999999999999 5999999999866 466 8
Q ss_pred eEEEecCccccCCCcc-cch-hhhHHHhhhhhhccccccCCccc-cccccchhhhhhcCCCCCccCCCCCCCCCCCCCCc
Q 039678 540 VCYVQFPQRFDGIDKS-DRY-SNRNRVFFDINMKGLDGIQGPMY-VGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCF 616 (1015)
Q Consensus 540 va~VQ~PQ~F~nid~~-D~y-~n~~~vFfdi~~~gldg~qgp~y-vGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~ 616 (1015)
++.||..++..|.+.. .+. ..+...++....++.+..+..+. .|++++|||+||
T Consensus 186 ~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al----------------------- 242 (444)
T PRK14583 186 TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRAL----------------------- 242 (444)
T ss_pred eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHH-----------------------
Confidence 9999998776553211 111 12333444555555444443332 355556666555
Q ss_pred ccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhccccc
Q 039678 617 RRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYE 696 (1015)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE 696 (1015)
++.||+
T Consensus 243 ----------------------------------------------------~~vGg~---------------------- 248 (444)
T PRK14583 243 ----------------------------------------------------ADVGYW---------------------- 248 (444)
T ss_pred ----------------------------------------------------HHcCCC----------------------
Confidence 567754
Q ss_pred ccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhh
Q 039678 697 DKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFS 767 (1015)
Q Consensus 697 ~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~s 767 (1015)
..+.++||++++++|+.+||++.|++.+.. ++++|+|++++++||.||++|.+|++++
T Consensus 249 -----------~~~~i~ED~dl~~rl~~~G~~i~~~p~a~~--~~~~p~t~~~~~~Qr~RW~~G~~~~~~~ 306 (444)
T PRK14583 249 -----------SPDMITEDIDISWKLQLKHWSVFFEPRGLC--WILMPETLRGLWKQRLRWAQGGAEVFLK 306 (444)
T ss_pred -----------CCCcccccHHHHHHHHHcCCeEEEeeccEE--eeeCCCCHHHHHHHHHHHhCcHHHHHHH
Confidence 446899999999999999999999987654 8999999999999999999999999985
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.97 E-value=6.5e-28 Score=279.08 Aligned_cols=283 Identities=15% Similarity=0.225 Sum_probs=192.3
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCC
Q 039678 300 PNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPR 379 (1015)
Q Consensus 300 ~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR 379 (1015)
++.+|.|+|+||++| |+ ..+.+||.|+++++||.+++.|+|.|||+++-|.+.+.|++
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------------------ 102 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------------------ 102 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------------------
Confidence 467999999999999 77 78999999999999999999999999999986554333310
Q ss_pred CcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccC
Q 039678 380 APEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGR 459 (1015)
Q Consensus 380 ~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~ 459 (1015)
. .+
T Consensus 103 ------------------------------------~-------------------------------~~---------- 105 (439)
T TIGR03111 103 ------------------------------------N-------------------------------EF---------- 105 (439)
T ss_pred ------------------------------------H-------------------------------hC----------
Confidence 0 00
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhc-CCCCCc
Q 039678 460 EGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLM-DPQTGK 538 (1015)
Q Consensus 460 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~-Dp~~g~ 538 (1015)
|++ ++.+.+ +.++||+|+|++++. ++++||+++|+|++ ++|++|++++..|. ||
T Consensus 106 -----------~~v-~v~~~~----~~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 106 -----------PGL-SLRYMN----SDQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred -----------CCe-EEEEeC----CCCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 111 111111 235799999999996 68999999999999 59999999999885 67
Q ss_pred ceEEEecCccccCCCccc-------chhhhHHHhhhhhh---cc--ccccCCccccccccchhhhhhcCCCCCccCCCCC
Q 039678 539 RVCYVQFPQRFDGIDKSD-------RYSNRNRVFFDINM---KG--LDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPR 606 (1015)
Q Consensus 539 ~va~VQ~PQ~F~nid~~D-------~y~n~~~vFfdi~~---~g--ldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~ 606 (1015)
+++.|+..+.-. .+..+ ++..++. +++... .| .....+..++
T Consensus 161 ~v~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~y~~~~l~~r~~~s~~~~~~~------------------------ 214 (439)
T TIGR03111 161 DIHAMTGVILTD-KELIEKTKGRFLKLIRRCE-YFEYAQAFLAGRNFESQVNSLFT------------------------ 214 (439)
T ss_pred CeEEEEeEEecC-chhhhhhcchhhhHhHHhH-HHHHHHHHHhhhHHHHhcCCeEE------------------------
Confidence 566665443211 11000 0100110 111100 00 0000000000
Q ss_pred CCCCCCCCCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHH
Q 039678 607 MGTCGCCPCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKE 686 (1015)
Q Consensus 607 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~e 686 (1015)
-.|...+|+++++++.||+++
T Consensus 215 -------------------------------------------------~sGa~~~~Rr~~l~~vggf~~---------- 235 (439)
T TIGR03111 215 -------------------------------------------------LSGAFSAFRRETILKTQLYNS---------- 235 (439)
T ss_pred -------------------------------------------------EccHHHhhhHHHHHHhCCCCC----------
Confidence 124455677777788897654
Q ss_pred HHHhhcccccccCccccccccccccccchHHHHHHHHh-CCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHh
Q 039678 687 AIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHS-RGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIF 765 (1015)
Q Consensus 687 a~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~-~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil 765 (1015)
++++||++++++++. .|+++.|++++. ++.++|+|++++++||.||++|.+|++
T Consensus 236 -----------------------~~i~ED~~l~~rl~~~~g~kv~~~~~a~--~~~~~p~t~~~~~~QR~RW~rG~~qv~ 290 (439)
T TIGR03111 236 -----------------------ETVGEDTDMTFQIRELLDGKVYLCENAI--FYVDPIDGLNKLYTQRQRWQRGELEVS 290 (439)
T ss_pred -----------------------CCcCccHHHHHHHHHhcCCeEEECCCCE--EEEECCcCHHHHHHHHHHHhccHHHHH
Confidence 589999999999975 699999997654 489999999999999999999999999
Q ss_pred hhcCCcccccccCCCCChhhhHHhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCcc
Q 039678 766 FSRHNPICYGCKEGKIKFLERFAYINTTIYPFTSIPLLAYCLLPAICLLTDKFIM 820 (1015)
Q Consensus 766 ~sk~~Pl~~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~i~ 820 (1015)
.....+.. +.+.++.+++.+...+..+...++.+++.++++++.++|.++.
T Consensus 291 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
T TIGR03111 291 HMFFESAN----KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVK 341 (439)
T ss_pred HHHHhhhh----hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 75333332 2335666666554555555667788888888888887775544
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=9.9e-28 Score=274.17 Aligned_cols=230 Identities=24% Similarity=0.293 Sum_probs=167.1
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCC
Q 039678 300 PNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPR 379 (1015)
Q Consensus 300 ~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR 379 (1015)
....|.|.|+||++| |+ ..+.+|+.|+++++|| ++.++|.|||+++-|.+.+.+
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~-------------------- 103 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR-------------------- 103 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH--------------------
Confidence 346899999999999 86 6789999999999999 688999999998744332211
Q ss_pred CcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccC
Q 039678 380 APEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGR 459 (1015)
Q Consensus 380 ~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~ 459 (1015)
+.+
T Consensus 104 -----------------------------------------~~~------------------------------------ 106 (420)
T PRK11204 104 -----------------------------------------LAA------------------------------------ 106 (420)
T ss_pred -----------------------------------------HHH------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhh-cCCCCCc
Q 039678 460 EGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFL-MDPQTGK 538 (1015)
Q Consensus 460 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff-~Dp~~g~ 538 (1015)
..|++.++.++++ .+||+|+|.+++. +++|||+++|+|.+ ++|++|.+++..| .||
T Consensus 107 ---------~~~~v~~i~~~~n-----~Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~---- 163 (420)
T PRK11204 107 ---------QIPRLRVIHLAEN-----QGKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP---- 163 (420)
T ss_pred ---------hCCcEEEEEcCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----
Confidence 0134677776653 3499999999996 68999999999999 5899999999988 577
Q ss_pred ceEEEecCccccCCCcccchhhhH----HHhhhhhhccccccCCccc-cccccchhhhhhcCCCCCccCCCCCCCCCCCC
Q 039678 539 RVCYVQFPQRFDGIDKSDRYSNRN----RVFFDINMKGLDGIQGPMY-VGTGCVFRRQALYGHEPPKAAKRPRMGTCGCC 613 (1015)
Q Consensus 539 ~va~VQ~PQ~F~nid~~D~y~n~~----~vFfdi~~~gldg~qgp~y-vGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 613 (1015)
+++.||...+..|... ..+..+ ..++....++....+.... .|+
T Consensus 164 ~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~----------------------------- 212 (420)
T PRK11204 164 RVGAVTGNPRIRNRST--LLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGV----------------------------- 212 (420)
T ss_pred CeEEEECCceeccchh--HHHHHHHHHHHHhhhHHHHHHHHhCCceEecce-----------------------------
Confidence 8999999877665321 111111 1111111111111111111 233
Q ss_pred CCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcc
Q 039678 614 PCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSC 693 (1015)
Q Consensus 614 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc 693 (1015)
...|+++++++.||+.+
T Consensus 213 ----------------------------------------------~~~~rr~~l~~vgg~~~----------------- 229 (420)
T PRK11204 213 ----------------------------------------------ITAFRKSALHEVGYWST----------------- 229 (420)
T ss_pred ----------------------------------------------eeeeeHHHHHHhCCCCC-----------------
Confidence 33445555567786544
Q ss_pred cccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhh
Q 039678 694 DYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFS 767 (1015)
Q Consensus 694 ~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~s 767 (1015)
..++||++++++++++||++.|++++.. +++.|+|++++++||.||++|.+|.++.
T Consensus 230 ----------------~~~~ED~~l~~rl~~~G~~i~~~p~~~~--~~~~p~t~~~~~~Qr~RW~~G~~~~l~~ 285 (420)
T PRK11204 230 ----------------DMITEDIDISWKLQLRGWDIRYEPRALC--WILMPETLKGLWKQRLRWAQGGAEVLLK 285 (420)
T ss_pred ----------------CcccchHHHHHHHHHcCCeEEeccccEE--EeECcccHHHHHHHHHHHhcCHHHHHHH
Confidence 5789999999999999999999987654 9999999999999999999999999985
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.95 E-value=8.8e-26 Score=264.68 Aligned_cols=266 Identities=18% Similarity=0.222 Sum_probs=184.2
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHH-cCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCC
Q 039678 302 MLAPVDIFVTTVDPMKEPPLVTANTILSVL-AMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRA 380 (1015)
Q Consensus 302 ~lP~VDvfV~T~dP~kEpp~v~~nTvls~l-a~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~ 380 (1015)
..|+|+|+||++| |. .++.+||.|++ ++||| ++.|+|.||++.+-|.+.+.|.+ +
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l~---~--------------- 119 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRLA---A--------------- 119 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHHH---H---------------
Confidence 4899999999999 97 79999999975 78996 79999999998886655443310 0
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCC
Q 039678 381 PEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGRE 460 (1015)
Q Consensus 381 Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~ 460 (1015)
.||
T Consensus 120 -------------------------------------------------------------------~~p---------- 122 (504)
T PRK14716 120 -------------------------------------------------------------------RYP---------- 122 (504)
T ss_pred -------------------------------------------------------------------HCC----------
Confidence 111
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhc--cccCc---eEEEEecCCCCCCchHHHHHHHHhhcCCC
Q 039678 461 GGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSG--VLTNS---SFILNLDCDHYVNNSKAVREAMCFLMDPQ 535 (1015)
Q Consensus 461 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSa--vltng---p~Il~lDcD~~~~~~~~Lr~amcff~Dp~ 535 (1015)
++..+. .+++| .+.||+|||.+++..- -...| ++|+++|||.+ ++|++|+....++-
T Consensus 123 -----------~v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~--- 184 (504)
T PRK14716 123 -----------RVHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLP--- 184 (504)
T ss_pred -----------CeEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcC---
Confidence 122111 12222 2589999999987521 01133 99999999999 58999987554443
Q ss_pred CCcceEEEecCccccCCCccc----chhhhHHHhhhhhhccccccCCcc-ccccccchhhhhhcCCCCCccCCCCCCCCC
Q 039678 536 TGKRVCYVQFPQRFDGIDKSD----RYSNRNRVFFDINMKGLDGIQGPM-YVGTGCVFRRQALYGHEPPKAAKRPRMGTC 610 (1015)
Q Consensus 536 ~g~~va~VQ~PQ~F~nid~~D----~y~n~~~vFfdi~~~gldg~qgp~-yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~ 610 (1015)
+.++||.|+...+.+.+. .|..+....+...+..++.+++++ ..|+|++|||++|..
T Consensus 185 ---~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 185 ---RHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ---CCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 346899998766543332 233333333445566778887765 578999999998821
Q ss_pred CCCCCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHh
Q 039678 611 GCCPCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHV 690 (1015)
Q Consensus 611 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v 690 (1015)
...+.||.
T Consensus 247 --------------------------------------------------------l~~~~GG~---------------- 254 (504)
T PRK14716 247 --------------------------------------------------------LAAERGGQ---------------- 254 (504)
T ss_pred --------------------------------------------------------HHhhcCCC----------------
Confidence 01123431
Q ss_pred hcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCC-------------cccccCCCCHHHHHHHhHHh
Q 039678 691 MSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRS-------------AFKGSAPINLSDRLNQALRW 757 (1015)
Q Consensus 691 ~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~-------------af~G~aP~tl~~~l~QR~RW 757 (1015)
+|..+++|||+++|++++.+|||++|++.+.. ++++++|+|++++++||.||
T Consensus 255 ---------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW 319 (504)
T PRK14716 255 ---------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARW 319 (504)
T ss_pred ---------------CCCCCCcchHHHHHHHHHHCCCEEEEecccccccccccccccccccccccCccCHHHHHHHHHHH
Confidence 26668999999999999999999999976631 24688999999999999999
Q ss_pred hccc-hhHhhhcCCcccc-cccCCCCChhhhHHhhhhhh
Q 039678 758 ALGS-VEIFFSRHNPICY-GCKEGKIKFLERFAYINTTI 794 (1015)
Q Consensus 758 A~G~-lQil~sk~~Pl~~-g~~~~~L~l~QRL~Yl~~~l 794 (1015)
+.|. +|.....- |. +...+.+.|++|.+.+..++
T Consensus 320 ~~Gi~~Q~~~~~g---w~~~~~~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 320 IYGIAFQGWERLG---WKGPAATKYMLWRDRKGLLTNLL 355 (504)
T ss_pred HhchHHhhHHhcC---CCCchhhhhhHHHHHHHHHHHHH
Confidence 9995 78875311 11 11123477888888776554
No 21
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=3.1e-25 Score=269.34 Aligned_cols=242 Identities=20% Similarity=0.313 Sum_probs=172.5
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHH-cCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCC
Q 039678 301 NMLAPVDIFVTTVDPMKEPPLVTANTILSVL-AMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPR 379 (1015)
Q Consensus 301 ~~lP~VDvfV~T~dP~kEpp~v~~nTvls~l-a~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR 379 (1015)
.+.|+|.|+||++| |. .++.+|+.+++ ++|||. +.|+|.||+..+-|.+++.+
T Consensus 60 ~~~~~vsIlVPa~n---E~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD~~T~~~~~~-------------------- 113 (727)
T PRK11234 60 PDEKPLAIMVPAWN---ET-GVIGNMAELAATTLDYEN--YHIFVGTYPNDPATQADVDA-------------------- 113 (727)
T ss_pred CCCCCEEEEEecCc---ch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCChhHHHHHHH--------------------
Confidence 45799999999999 97 89999999987 799994 99999987655534332222
Q ss_pred CcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccC
Q 039678 380 APEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGR 459 (1015)
Q Consensus 380 ~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~ 459 (1015)
+++ .||.+
T Consensus 114 -----------------------------------------l~~------------------------~~p~~------- 121 (727)
T PRK11234 114 -----------------------------------------VCA------------------------RFPNV------- 121 (727)
T ss_pred -----------------------------------------HHH------------------------HCCCc-------
Confidence 110 01110
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccc-----cCceEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039678 460 EGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVL-----TNSSFILNLDCDHYVNNSKAVREAMCFLMDP 534 (1015)
Q Consensus 460 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavl-----tngp~Il~lDcD~~~~~~~~Lr~amcff~Dp 534 (1015)
+++.+.| || .+.||+|||.++...--. ...++++++|||.+ ++|++|+ .+.+|+++
T Consensus 122 ------------~~v~~~~---~g--~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~ 182 (727)
T PRK11234 122 ------------HKVVCAR---PG--PTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER 182 (727)
T ss_pred ------------EEEEeCC---CC--CCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC
Confidence 1333334 33 357999999998863100 12356888999999 5999998 67888886
Q ss_pred CCCcceEEEecCccccCCCccc----chhhhHHHhhhhhhccccccCCcc-ccccccchhhhhhcCCCCCccCCCCCCCC
Q 039678 535 QTGKRVCYVQFPQRFDGIDKSD----RYSNRNRVFFDINMKGLDGIQGPM-YVGTGCVFRRQALYGHEPPKAAKRPRMGT 609 (1015)
Q Consensus 535 ~~g~~va~VQ~PQ~F~nid~~D----~y~n~~~vFfdi~~~gldg~qgp~-yvGTGcvfRR~ALyG~~p~~~~~~~~~~~ 609 (1015)
+ ++||.|....+...+. -|..+....++..+++++.++|++ +.|+|++|.|++|
T Consensus 183 ----~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l---------------- 241 (727)
T PRK11234 183 ----K-DLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV---------------- 241 (727)
T ss_pred ----C-CeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH----------------
Confidence 4 7999996633322222 134455555667788889987765 5788999855443
Q ss_pred CCCCCCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhC-CCCCCCchHHHHHHHH
Q 039678 610 CGCCPCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQG-GVPASSSREALLKEAI 688 (1015)
Q Consensus 610 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G-G~p~~~~~~~~~~ea~ 688 (1015)
+++.+.| |+
T Consensus 242 --------------------------------------------------------~al~~~ggg~-------------- 251 (727)
T PRK11234 242 --------------------------------------------------------TALLEDGDGI-------------- 251 (727)
T ss_pred --------------------------------------------------------HHHHHhcCCC--------------
Confidence 1223455 43
Q ss_pred HhhcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCC---------------------CcccccCCCCH
Q 039678 689 HVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKR---------------------SAFKGSAPINL 747 (1015)
Q Consensus 689 ~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~---------------------~af~G~aP~tl 747 (1015)
+|..+++|||+++|++|+.+||+++|++... .+++++.|+|+
T Consensus 252 -----------------~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~ 314 (727)
T PRK11234 252 -----------------AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTF 314 (727)
T ss_pred -----------------CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhH
Confidence 5788999999999999999999999997221 34688899999
Q ss_pred HHHHHHhHHhhcc-chhHhhh
Q 039678 748 SDRLNQALRWALG-SVEIFFS 767 (1015)
Q Consensus 748 ~~~l~QR~RWA~G-~lQil~s 767 (1015)
++.++||.||..| .+|.+..
T Consensus 315 ~~~~rQR~RW~~G~~~q~~~~ 335 (727)
T PRK11234 315 SAAVRQKSRWIIGIVFQGFKT 335 (727)
T ss_pred HHHHHHHHHHHcccHHHHHHH
Confidence 9999999999999 6888753
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.94 E-value=1.7e-25 Score=232.09 Aligned_cols=229 Identities=35% Similarity=0.602 Sum_probs=179.4
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccc
Q 039678 304 APVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEM 383 (1015)
Q Consensus 304 P~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~ 383 (1015)
|.|.|+||++| |++..+..++.|+++.+||.+++.++|+|||+++-|.+-+.+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~------------------------ 53 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAE------------------------ 53 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHH------------------------
Confidence 67999999999 888899999999999999998899999999987633221110
Q ss_pred ccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCC
Q 039678 384 YFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGH 463 (1015)
Q Consensus 384 yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~ 463 (1015)
+. . +
T Consensus 54 -------------------------------------~~---~----~-------------------------------- 57 (234)
T cd06421 54 -------------------------------------LG---V----E-------------------------------- 57 (234)
T ss_pred -------------------------------------hh---c----c--------------------------------
Confidence 10 0 0
Q ss_pred CCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcC-CCCCcceEE
Q 039678 464 DAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMD-PQTGKRVCY 542 (1015)
Q Consensus 464 d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~D-p~~g~~va~ 542 (1015)
.++.|+.+++ +.++|+||+|.+++. .+++||+.+|+|.++ +|++|.+.+..|.+ | +++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHVP-TPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccCc-CccHHHHHHHHHhcCC----CeEE
Confidence 0255666665 455799999999996 589999999999995 89999999999876 6 7999
Q ss_pred EecCccccCCCcc----cchhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCccc
Q 039678 543 VQFPQRFDGIDKS----DRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRR 618 (1015)
Q Consensus 543 VQ~PQ~F~nid~~----D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~ 618 (1015)
||.++.+.+.+.. ..+......|+.....+...+....+.|++.+|||+++
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~------------------------- 172 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL------------------------- 172 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH-------------------------
Confidence 9999998877653 22334445555555555544455566677777776665
Q ss_pred chhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhccccccc
Q 039678 619 QKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDK 698 (1015)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~ 698 (1015)
+++||++.
T Consensus 173 --------------------------------------------------~~ig~~~~---------------------- 180 (234)
T cd06421 173 --------------------------------------------------DEIGGFPT---------------------- 180 (234)
T ss_pred --------------------------------------------------HHhCCCCc----------------------
Confidence 45677654
Q ss_pred CccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHh
Q 039678 699 TEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIF 765 (1015)
Q Consensus 699 T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil 765 (1015)
..+.||++++++++.+||+++|++.+.. ++..|.+++++++||.||.+|.+|++
T Consensus 181 -----------~~~~eD~~l~~r~~~~g~~i~~~~~~~~--~~~~~~~~~~~~~q~~rw~~~~~~~~ 234 (234)
T cd06421 181 -----------DSVTEDLATSLRLHAKGWRSVYVPEPLA--AGLAPETLAAYIKQRLRWARGMLQIL 234 (234)
T ss_pred -----------cceeccHHHHHHHHHcCceEEEecCccc--cccCCccHHHHHHHHHHHhcCCeeeC
Confidence 4678999999999999999999988764 89999999999999999999999864
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.93 E-value=4.9e-25 Score=231.02 Aligned_cols=228 Identities=21% Similarity=0.345 Sum_probs=164.6
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccc
Q 039678 304 APVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEM 383 (1015)
Q Consensus 304 P~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~ 383 (1015)
|.|.|+||+|| |. ..+..++.|+++++||.+++.|+|+|| +++-|.+.+.+. .
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~---~------------------- 53 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI---V------------------- 53 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH---H-------------------
Confidence 67999999999 86 688999999999999999999999998 777555544331 0
Q ss_pred ccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCC
Q 039678 384 YFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGH 463 (1015)
Q Consensus 384 yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~ 463 (1015)
.++..
T Consensus 54 ----------------------------~~~~~----------------------------------------------- 58 (232)
T cd06437 54 ----------------------------EEYAA----------------------------------------------- 58 (232)
T ss_pred ----------------------------HHHhh-----------------------------------------------
Confidence 00000
Q ss_pred CCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEE
Q 039678 464 DAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYV 543 (1015)
Q Consensus 464 d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~V 543 (1015)
.-|++.++.+.+++|+ |++|+|++++. .+++||+++|+|.++ +|++|+++..++.|| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G~----k~~a~n~g~~~----a~~~~i~~~DaD~~~-~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTGY----KAGALAEGMKV----AKGEYVAIFDADFVP-PPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCCC----chHHHHHHHHh----CCCCEEEEEcCCCCC-ChHHHHHhhhhhcCC----CeEEE
Confidence 0124788888776554 99999999996 689999999999995 899999977788787 79999
Q ss_pred ecCccccCCCccc--ch-hhhHHHhhhhhhccccccCCcc-ccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccc
Q 039678 544 QFPQRFDGIDKSD--RY-SNRNRVFFDINMKGLDGIQGPM-YVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQ 619 (1015)
Q Consensus 544 Q~PQ~F~nid~~D--~y-~n~~~vFfdi~~~gldg~qgp~-yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~ 619 (1015)
|.+..+.+.+.+- ++ .-....++...+.+........ ..|++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------------------------------- 168 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGV-------------------------------- 168 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhh--------------------------------
Confidence 9977665543221 11 0011112333222222221111 2344444
Q ss_pred hhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccC
Q 039678 620 KQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKT 699 (1015)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T 699 (1015)
|+++++++.||++.
T Consensus 169 -------------------------------------------~rr~~~~~vgg~~~----------------------- 182 (232)
T cd06437 169 -------------------------------------------WRKECIEDAGGWNH----------------------- 182 (232)
T ss_pred -------------------------------------------hhHHHHHHhCCCCC-----------------------
Confidence 44555567888754
Q ss_pred ccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccc
Q 039678 700 EWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGS 761 (1015)
Q Consensus 700 ~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~ 761 (1015)
.++.||+++++|++.+||+++|++.+. ++...|+|+.++++||+||++|.
T Consensus 183 ----------~~~~ED~~l~~rl~~~G~~~~~~~~~~--v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 183 ----------DTLTEDLDLSYRAQLKGWKFVYLDDVV--VPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred ----------CcchhhHHHHHHHHHCCCeEEEeccce--eeeeCCcCHHHHHHHHHHhccCC
Confidence 467899999999999999999997655 48999999999999999999984
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.92 E-value=1.1e-23 Score=223.08 Aligned_cols=232 Identities=21% Similarity=0.283 Sum_probs=166.8
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccc
Q 039678 304 APVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEM 383 (1015)
Q Consensus 304 P~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~ 383 (1015)
|.|.|+||++| |+ ..+..|+.|+++++||.+++.++|.|||+++.|.+.+.+. ++
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~---~~------------------ 55 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL---RL------------------ 55 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh---cc------------------
Confidence 67999999999 87 7889999999999999889999999999887554422210 00
Q ss_pred ccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCC
Q 039678 384 YFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGH 463 (1015)
Q Consensus 384 yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~ 463 (1015)
+
T Consensus 56 ---------------------------------------------~---------------------------------- 56 (241)
T cd06427 56 ---------------------------------------------P---------------------------------- 56 (241)
T ss_pred ---------------------------------------------C----------------------------------
Confidence 0
Q ss_pred CCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEE
Q 039678 464 DAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYV 543 (1015)
Q Consensus 464 d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~V 543 (1015)
.-.+++++.+.+ ..+|++|+|++++. ++|+||+.+|+|.++ .|++|.+++.+|.+. ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~~-~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDAP-DPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCCC-ChHHHHHHHHHHHhc--CCCEEEE
Confidence 001244444322 23699999999996 689999999999995 899999999988621 1289999
Q ss_pred ecCccccCCCccc---chhhhHHHhhhhhhccccccCCccc-cccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccc
Q 039678 544 QFPQRFDGIDKSD---RYSNRNRVFFDINMKGLDGIQGPMY-VGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQ 619 (1015)
Q Consensus 544 Q~PQ~F~nid~~D---~y~n~~~vFfdi~~~gldg~qgp~y-vGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~ 619 (1015)
|.+..+.+...+- .+..+...+|+..+++....+.+.. .|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------------------------------- 166 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSN--------------------------------- 166 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchH---------------------------------
Confidence 9988877643221 0111222233444444433332221 23333
Q ss_pred hhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccC
Q 039678 620 KQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKT 699 (1015)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T 699 (1015)
.|+++++++.||+.+
T Consensus 167 ------------------------------------------~~rr~~~~~vgg~~~----------------------- 181 (241)
T cd06427 167 ------------------------------------------HFRTDVLRELGGWDP----------------------- 181 (241)
T ss_pred ------------------------------------------HhhHHHHHHcCCCCc-----------------------
Confidence 444555567887643
Q ss_pred ccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhh
Q 039678 700 EWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFS 767 (1015)
Q Consensus 700 ~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~s 767 (1015)
...+||++++++++.+||+++|++.. ++...|+|++++++||.||+.|.+|++..
T Consensus 182 ----------~~~~eD~~l~~rl~~~G~r~~~~~~~---~~~~~~~~~~~~~~q~~Rw~~g~~~~~~~ 236 (241)
T cd06427 182 ----------FNVTEDADLGLRLARAGYRTGVLNST---TLEEANNALGNWIRQRSRWIKGYMQTWLV 236 (241)
T ss_pred ----------ccchhhHHHHHHHHHCCceEEEeccc---ccccCcHhHHHHHHHHHHHhccHHHHHHH
Confidence 46789999999999999999999543 37899999999999999999999999974
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.92 E-value=1.7e-23 Score=218.90 Aligned_cols=173 Identities=26% Similarity=0.443 Sum_probs=122.1
Q ss_pred EEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccCC
Q 039678 473 LVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGI 552 (1015)
Q Consensus 473 lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~ni 552 (1015)
+.++..++.+| .|+||+|.+++... .+++||+.+|+|.. ..|++|.+++.+|.+| +++.||+++.+.+.
T Consensus 58 i~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 56666665344 59999999999742 46899999999998 5899999999998776 79999998765432
Q ss_pred Ccccchhh----hHHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhccchh
Q 039678 553 DKSDRYSN----RNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKNSKA 628 (1015)
Q Consensus 553 d~~D~y~n----~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 628 (1015)
.. ..+.- ....+|...+......+.....|+++
T Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------------------------------------------ 163 (236)
T cd06435 127 EE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMC------------------------------------------ 163 (236)
T ss_pred Cc-cHHHHHHhHHHHHHHHHHhccccccCceEEecceE------------------------------------------
Confidence 11 11110 01111111111111112222233333
Q ss_pred hHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccc
Q 039678 629 NVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWI 708 (1015)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ 708 (1015)
.+++++++++||+++
T Consensus 164 ---------------------------------~~rr~~~~~iGgf~~-------------------------------- 178 (236)
T cd06435 164 ---------------------------------LIRRSALDDVGGWDE-------------------------------- 178 (236)
T ss_pred ---------------------------------EEEHHHHHHhCCCCC--------------------------------
Confidence 444555567887654
Q ss_pred cccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhh
Q 039678 709 YGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFS 767 (1015)
Q Consensus 709 ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~s 767 (1015)
....||++++++++.+||++.|++.... +...|.|+.++++||.||++|++|++..
T Consensus 179 -~~~~eD~dl~~r~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~q~~rw~~g~~~~~~~ 234 (236)
T cd06435 179 -WCITEDSELGLRMHEAGYIGVYVAQSYG--HGLIPDTFEAFKKQRFRWAYGAVQILKK 234 (236)
T ss_pred -ccccchHHHHHHHHHCCcEEEEcchhhc--cCcCcccHHHHHHHHHHHhcchhhhhhc
Confidence 3578999999999999999999976554 8999999999999999999999999983
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.88 E-value=2.9e-23 Score=215.71 Aligned_cols=224 Identities=27% Similarity=0.427 Sum_probs=136.0
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccc
Q 039678 304 APVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEM 383 (1015)
Q Consensus 304 P~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~ 383 (1015)
|.|.|+||++| |+ ..+..++.|+++++|| ++.++|+||+.++-|.+.+.+
T Consensus 1 P~v~Vvip~~~---~~-~~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~~------------------------ 50 (228)
T PF13641_consen 1 PRVSVVIPAYN---ED-DVLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILRA------------------------ 50 (228)
T ss_dssp --EEEE--BSS----H-HHHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHHH------------------------
T ss_pred CEEEEEEEecC---CH-HHHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHHH------------------------
Confidence 78999999998 76 4999999999999995 699999999988744332221
Q ss_pred ccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCC
Q 039678 384 YFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGH 463 (1015)
Q Consensus 384 yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~ 463 (1015)
++++ .|.
T Consensus 51 -------------------------------------~~~~---~~~--------------------------------- 57 (228)
T PF13641_consen 51 -------------------------------------LAAR---YPR--------------------------------- 57 (228)
T ss_dssp -------------------------------------HHHT---TGG---------------------------------
T ss_pred -------------------------------------HHHH---cCC---------------------------------
Confidence 1100 000
Q ss_pred CCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEE
Q 039678 464 DAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYV 543 (1015)
Q Consensus 464 d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~V 543 (1015)
-++.++.+.+++| ...|++|+|.+++. ..+++|+++|+|.++ +|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~~-~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTVL-DPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEEE--CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcEE-CHHHHHHHHHHHHhC----CCCeE
Confidence 0267777665332 13699999999996 569999999999995 899999999998888 89999
Q ss_pred ecCccccCCCcccchhhhHHHhhh----hhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccc
Q 039678 544 QFPQRFDGIDKSDRYSNRNRVFFD----INMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQ 619 (1015)
Q Consensus 544 Q~PQ~F~nid~~D~y~n~~~vFfd----i~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~ 619 (1015)
|.+..+++ +.+ .+......++. ....+....+...+.|++++|||+++
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~-------------------------- 171 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSAL-------------------------- 171 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHH--------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHH--------------------------
Confidence 98886664 222 11111111211 11222233333445566666666555
Q ss_pred hhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccC
Q 039678 620 KQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKT 699 (1015)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T 699 (1015)
+++||+.+
T Consensus 172 -------------------------------------------------~~~g~fd~----------------------- 179 (228)
T PF13641_consen 172 -------------------------------------------------EEVGGFDP----------------------- 179 (228)
T ss_dssp -------------------------------------------------HHH-S--S-----------------------
T ss_pred -------------------------------------------------HHhCCCCC-----------------------
Confidence 56776543
Q ss_pred ccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhcc
Q 039678 700 EWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALG 760 (1015)
Q Consensus 700 ~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G 760 (1015)
....||+++++++..+||+++|++... ++...|.|++++++||.||+.|
T Consensus 180 ----------~~~~eD~~l~~r~~~~G~~~~~~~~~~--v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 180 ----------FILGEDFDLCLRLRAAGWRIVYAPDAL--VYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp ----------SSSSHHHHHHHHHHHTT--EEEEEEEE--EEE--SSSTHHHHHHHHHHH--
T ss_pred ----------CCcccHHHHHHHHHHCCCcEEEECCcE--EEEeCCCCHHHHHHHHhccCcC
Confidence 477899999999999999999997654 4899999999999999999987
No 27
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.87 E-value=3.3e-20 Score=223.80 Aligned_cols=172 Identities=19% Similarity=0.282 Sum_probs=128.5
Q ss_pred CCCchhhhHHHHHHh---ccccCceE--EEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCcc-ccCCCcc---c
Q 039678 486 HNKRAGAMNALVRVS---GVLTNSSF--ILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQR-FDGIDKS---D 556 (1015)
Q Consensus 486 hh~KAGALNallrvS---avltngp~--Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~-F~nid~~---D 556 (1015)
...||.|||.++... .-.+.+.| |+++|||.+ ++|++|+. |-++++. . -+||.|-. ..|...+ .
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~ 211 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAG 211 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHH
Confidence 356999999988752 11124444 999999999 69999975 5777653 1 36998732 1221111 3
Q ss_pred chhhhHHHhhhhhhccccccCCccc-cccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhccchhhHHHHhh
Q 039678 557 RYSNRNRVFFDINMKGLDGIQGPMY-VGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKNSKANVIREAA 635 (1015)
Q Consensus 557 ~y~n~~~vFfdi~~~gldg~qgp~y-vGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 635 (1015)
.|..+....|+..++++..+.|++. .|||++|||.||-.
T Consensus 212 ~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~---------------------------------------- 251 (703)
T PRK15489 212 TYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLA---------------------------------------- 251 (703)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHH----------------------------------------
Confidence 3777888899999999999999886 56999999999821
Q ss_pred hhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccch
Q 039678 636 NLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTED 715 (1015)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED 715 (1015)
+.+.||.. +|+.+++|||
T Consensus 252 --------------------------------l~~~gg~~------------------------------~~n~~sLTED 269 (703)
T PRK15489 252 --------------------------------LMKERGNQ------------------------------PFNTSSLTED 269 (703)
T ss_pred --------------------------------HHHhcCCC------------------------------CCCCCCchHh
Confidence 12334321 5788999999
Q ss_pred HHHHHHHHhCCcEEEEecC---------------------CCCcccccCCCCHHHHHHHhHHhhccch-hHhh
Q 039678 716 ILTGFKLHSRGWRSIYCMP---------------------KRSAFKGSAPINLSDRLNQALRWALGSV-EIFF 766 (1015)
Q Consensus 716 ~~tg~rL~~~GwrsvY~~~---------------------~~~af~G~aP~tl~~~l~QR~RWA~G~l-Qil~ 766 (1015)
+++|+||+.+|||+.|+.- ...+.++..|.|+.+.++||.||..|-. |-..
T Consensus 270 ~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~~Gi~~q~~~ 342 (703)
T PRK15489 270 YDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWVLGIAFQGWE 342 (703)
T ss_pred HHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHHhHHHHhhHH
Confidence 9999999999999999321 1246688999999999999999999987 7764
No 28
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.86 E-value=4.8e-20 Score=209.25 Aligned_cols=234 Identities=18% Similarity=0.251 Sum_probs=157.7
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCC
Q 039678 301 NMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRA 380 (1015)
Q Consensus 301 ~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~ 380 (1015)
...|+|.|+||++| |++ .+.+++.|++++|||. +.|+|.||++++-|.+.+.+
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~--------------------- 90 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR--------------------- 90 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH---------------------
Confidence 34899999999999 875 5789999999999995 88999999887744332211
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCC
Q 039678 381 PEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGRE 460 (1015)
Q Consensus 381 Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~ 460 (1015)
+.+ +||.
T Consensus 91 ----------------------------------------~~~------------------------~~p~--------- 97 (373)
T TIGR03472 91 ----------------------------------------LRA------------------------DFPD--------- 97 (373)
T ss_pred ----------------------------------------HHH------------------------hCCC---------
Confidence 100 0100
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcce
Q 039678 461 GGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRV 540 (1015)
Q Consensus 461 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~v 540 (1015)
.++.++.+.++.| .++|++|+|++++. +++|+|+.+|+|.++ .|++|++++..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~~~-~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDISV-GPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCCCc-ChhHHHHHHHHhcCC----Cc
Confidence 1355665444333 45799999998875 689999999999995 899999999999888 78
Q ss_pred EEEecCccccCCCcccchhhhHH-Hhhhh-hhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCccc
Q 039678 541 CYVQFPQRFDGIDKSDRYSNRNR-VFFDI-NMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRR 618 (1015)
Q Consensus 541 a~VQ~PQ~F~nid~~D~y~n~~~-vFfdi-~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~ 618 (1015)
+.|+.+.+..+ . +.+.++.. .+... .+++. ... ..+ |.
T Consensus 157 ~~V~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~~-------------~~~-~~~-~~---------------------- 196 (373)
T TIGR03472 157 GLVTCLYRGRP--V-PGFWSRLGAMGINHNFLPSV-------------MVA-RAL-GR---------------------- 196 (373)
T ss_pred ceEeccccCCC--C-CCHHHHHHHHHhhhhhhHHH-------------HHH-Hhc-cC----------------------
Confidence 89998644221 1 11221111 11000 00000 000 000 00
Q ss_pred chhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhccccccc
Q 039678 619 QKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDK 698 (1015)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~ 698 (1015)
..-..|++..|++++++++||++..
T Consensus 197 ----------------------------------~~~~~G~~~a~RR~~l~~iGGf~~~--------------------- 221 (373)
T TIGR03472 197 ----------------------------------ARFCFGATMALRRATLEAIGGLAAL--------------------- 221 (373)
T ss_pred ----------------------------------CccccChhhheeHHHHHHcCChHHh---------------------
Confidence 0001356667777778889987531
Q ss_pred CccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccch
Q 039678 699 TEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSV 762 (1015)
Q Consensus 699 T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~l 762 (1015)
..+++||++++.++..+||++.|.+.... +...|+|++++++||.||++...
T Consensus 222 ----------~~~~~ED~~l~~~i~~~G~~v~~~~~~v~--~~~~~~s~~~~~~q~~RW~r~~~ 273 (373)
T TIGR03472 222 ----------AHHLADDYWLGELVRALGLRVVLAPVVVD--TDVHETSFATLLAHELRWSRTIR 273 (373)
T ss_pred ----------cccchHHHHHHHHHHHcCCeEEecchhhh--cCCCccCHHHHHHHHHHHHhhhh
Confidence 14688999999999999999999866543 67888999999999999984433
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.86 E-value=1.4e-21 Score=208.69 Aligned_cols=165 Identities=17% Similarity=0.121 Sum_probs=105.7
Q ss_pred cCceEEEEecCCCCCCchHHHHHHHHhh-cCCCCCcceEEEecCccccCCCcccc--hhh-hHHHhhhhhhccccccCC-
Q 039678 504 TNSSFILNLDCDHYVNNSKAVREAMCFL-MDPQTGKRVCYVQFPQRFDGIDKSDR--YSN-RNRVFFDINMKGLDGIQG- 578 (1015)
Q Consensus 504 tngp~Il~lDcD~~~~~~~~Lr~amcff-~Dp~~g~~va~VQ~PQ~F~nid~~D~--y~n-~~~vFfdi~~~gldg~qg- 578 (1015)
++++||+++|+|.++ +|++|++++..| .|| +++.||..+...|...+-. +.+ +...++-....+.+.++.
T Consensus 72 a~~e~i~~~DaD~~~-~~~~l~~l~~~~~~~p----~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~ 146 (244)
T cd04190 72 DDPEFILLVDADTKF-DPDSIVQLYKAMDKDP----EIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFV 146 (244)
T ss_pred CCCCEEEEECCCCcC-CHhHHHHHHHHHHhCC----CEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCce
Confidence 689999999999995 899999999887 688 7999999887766532211 111 000101111111222222
Q ss_pred ccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcC
Q 039678 579 PMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFG 658 (1015)
Q Consensus 579 p~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG 658 (1015)
....|++.+|||+||...... . .+..+
T Consensus 147 ~~~~G~~~~~R~~~l~~~~~~---------~-~~~~~------------------------------------------- 173 (244)
T cd04190 147 TCLPGCFSMYRIEALKGDNGG---------K-GPLLD------------------------------------------- 173 (244)
T ss_pred EECCCceEEEEehhhcCCccc---------c-ccchh-------------------------------------------
Confidence 334577778888888532100 0 00000
Q ss_pred chhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccchHHHHHHHHhCCcEEEE--ecCCC
Q 039678 659 QSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIY--CMPKR 736 (1015)
Q Consensus 659 ~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY--~~~~~ 736 (1015)
..+.++++.+ |+ +....+++||.+++++|..+||++.| ++.+.
T Consensus 174 --~~~~~~~~~~-~~--------------------------------~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~a~ 218 (244)
T cd04190 174 --YAYLTNTVDS-LH--------------------------------KKNNLDLGEDRILCTLLLKAGPKRKYLYVPGAV 218 (244)
T ss_pred --hccccCcccc-hH--------------------------------HHHHHhHhcccceeHHHhccCCccEEEEecccE
Confidence 0011111111 10 12235799999999999999999999 76665
Q ss_pred CcccccCCCCHHHHHHHhHHhhccchh
Q 039678 737 SAFKGSAPINLSDRLNQALRWALGSVE 763 (1015)
Q Consensus 737 ~af~G~aP~tl~~~l~QR~RWA~G~lQ 763 (1015)
. +.++|+|++++++||+||++|++.
T Consensus 219 ~--~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 219 A--ETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred E--EEECCCCHHHHHHHhHhhhccccc
Confidence 4 999999999999999999999873
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.84 E-value=6.7e-20 Score=188.97 Aligned_cols=226 Identities=15% Similarity=0.208 Sum_probs=154.4
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccccccc
Q 039678 308 IFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEMYFSQ 387 (1015)
Q Consensus 308 vfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~yFs~ 387 (1015)
|+|||+| |+ ..+.+||.|++.++||.+++.|+|.|||+++-|.+.+.+
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~---------------------------- 48 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEF---------------------------- 48 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHH----------------------------
Confidence 6899998 76 789999999999999998999999999987744332210
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCCCCCC
Q 039678 388 KVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGHDAEG 467 (1015)
Q Consensus 388 ~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~d~~~ 467 (1015)
.. .
T Consensus 49 ------------------------~~------------~----------------------------------------- 51 (229)
T cd04192 49 ------------------------AA------------A----------------------------------------- 51 (229)
T ss_pred ------------------------HH------------h-----------------------------------------
Confidence 00 0
Q ss_pred CCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCc
Q 039678 468 NELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQ 547 (1015)
Q Consensus 468 ~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ 547 (1015)
...|++.++.++. + ...+|+.|+|.++.. ++++||+++|+|.++ .|++|.+++..|.++ ..+.|+.++
T Consensus 52 ~~~~~v~~~~~~~--~-~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~~-~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR--V-SISGKKNALTTAIKA----AKGDWIVTTDADCVV-PSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC--c-ccchhHHHHHHHHHH----hcCCEEEEECCCccc-CHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012355555543 1 235799999999986 679999999999985 899999999977665 577888888
Q ss_pred cccCCCcc-cchhhhHHHhhhhhhccccccCCcc-ccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhcc
Q 039678 548 RFDGIDKS-DRYSNRNRVFFDINMKGLDGIQGPM-YVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKN 625 (1015)
Q Consensus 548 ~F~nid~~-D~y~n~~~vFfdi~~~gldg~qgp~-yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~ 625 (1015)
.+...+.. ..+..-...+......+..+++.+. ..|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------------------------------------ 157 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNG------------------------------------------ 157 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCcccccc------------------------------------------
Confidence 77622111 1111111111111111111222111 123
Q ss_pred chhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCcccccc
Q 039678 626 SKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTEL 705 (1015)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~ev 705 (1015)
.+..|++++++++||+++.
T Consensus 158 ---------------------------------~~~~~rr~~~~~~ggf~~~---------------------------- 176 (229)
T cd04192 158 ---------------------------------ANMAYRKEAFFEVGGFEGN---------------------------- 176 (229)
T ss_pred ---------------------------------ceEEEEHHHHHHhcCCccc----------------------------
Confidence 3334455556778987641
Q ss_pred ccccccccchHHHHHHHHhCCc-EEEEecCCCCcccccCCCCHHHHHHHhHHhhcc
Q 039678 706 GWIYGSVTEDILTGFKLHSRGW-RSIYCMPKRSAFKGSAPINLSDRLNQALRWALG 760 (1015)
Q Consensus 706 Gw~ygsvTED~~tg~rL~~~Gw-rsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G 760 (1015)
....+||.++.+++..+|| ++.|+..+...++...|.+++++++||+||++|
T Consensus 177 ---~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 177 ---DHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ---cccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 2467899999999999999 999986555556899999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.82 E-value=2.5e-19 Score=184.05 Aligned_cols=195 Identities=18% Similarity=0.214 Sum_probs=147.0
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccc
Q 039678 304 APVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEM 383 (1015)
Q Consensus 304 P~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~ 383 (1015)
|.|.|+||++| |.. .+..++-|+++.+||. +.++|.|||+++-|.+.+.+. + ++
T Consensus 1 p~vsviip~~n---~~~-~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~~---~-------~~---------- 54 (196)
T cd02520 1 PGVSILKPLCG---VDP-NLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRKL---I-------AK---------- 54 (196)
T ss_pred CCeEEEEecCC---CCc-cHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHHH---H-------HH----------
Confidence 67999999999 765 4789999999999985 899999999987544432221 0 00
Q ss_pred ccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCC
Q 039678 384 YFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGH 463 (1015)
Q Consensus 384 yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~ 463 (1015)
||. .
T Consensus 55 -----------------------------------------------------------------~~~---------~-- 58 (196)
T cd02520 55 -----------------------------------------------------------------YPN---------V-- 58 (196)
T ss_pred -----------------------------------------------------------------CCC---------C--
Confidence 000 0
Q ss_pred CCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEE
Q 039678 464 DAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYV 543 (1015)
Q Consensus 464 d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~V 543 (1015)
++.|+...++.| ..+|++|+|++++. .+++|++++|+|..+ .|++|.+++..+.+| +++.|
T Consensus 59 --------~~~~~~~~~~~g--~~~~~~~~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~l~~~~~~~----~~~~v 119 (196)
T cd02520 59 --------DARLLIGGEKVG--INPKVNNLIKGYEE----ARYDILVISDSDISV-PPDYLRRMVAPLMDP----GVGLV 119 (196)
T ss_pred --------cEEEEecCCcCC--CCHhHHHHHHHHHh----CCCCEEEEECCCceE-ChhHHHHHHHHhhCC----CCCeE
Confidence 134444443222 23689999999986 689999999999985 899999999988887 57788
Q ss_pred ecCccccCCCcccchhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhh
Q 039678 544 QFPQRFDGIDKSDRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQ 623 (1015)
Q Consensus 544 Q~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~ 623 (1015)
+.. ...|+++++||+++
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~------------------------------ 136 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVL------------------------------ 136 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHH------------------------------
Confidence 764 34567778887776
Q ss_pred ccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCcccc
Q 039678 624 KNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGT 703 (1015)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~ 703 (1015)
++.||++..
T Consensus 137 ---------------------------------------------~~~ggf~~~-------------------------- 145 (196)
T cd02520 137 ---------------------------------------------DAIGGFEAF-------------------------- 145 (196)
T ss_pred ---------------------------------------------HhccChHHH--------------------------
Confidence 345665320
Q ss_pred ccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhcc
Q 039678 704 ELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALG 760 (1015)
Q Consensus 704 evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G 760 (1015)
...+.||+++++++..+||++.|++... ++...|.+++++++||.||++.
T Consensus 146 -----~~~~~eD~~l~~rl~~~G~~i~~~~~~~--~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 146 -----ADYLAEDYFLGKLIWRLGYRVVLSPYVV--MQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred -----hHHHHHHHHHHHHHHHcCCeEEEcchhe--eccCCcccHHHHHHHHHHHhcc
Confidence 1256899999999999999999997754 3899999999999999999863
No 32
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=1.6e-16 Score=180.81 Aligned_cols=222 Identities=21% Similarity=0.370 Sum_probs=164.3
Q ss_pred cEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhh-cCCCCCcceEEEecCcccc
Q 039678 472 NLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFL-MDPQTGKRVCYVQFPQRFD 550 (1015)
Q Consensus 472 ~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff-~Dp~~g~~va~VQ~PQ~F~ 550 (1015)
++.|-.|.+ |-..||||+-...|.-| +..+++++||||.++ ..+.+-+.+..| .+| +.|.+|+-..-.
T Consensus 213 ~ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSvM-tgd~lvrLv~~ME~~P----~aGlIQt~P~~~ 281 (736)
T COG2943 213 NIFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSVM-TGDCLVRLVRLMEANP----DAGLIQTSPKAS 281 (736)
T ss_pred ceeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeeccccc-CchHHHHHHHHHhhCC----CCceeecchhhc
Confidence 477877777 55679999999999988 788999999999996 789999998887 577 789999955544
Q ss_pred CCCcccchhh----hHHHhhhhhhccccccCCc--cccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhc
Q 039678 551 GIDKSDRYSN----RNRVFFDINMKGLDGIQGP--MYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQK 624 (1015)
Q Consensus 551 nid~~D~y~n----~~~vFfdi~~~gldg~qgp--~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~ 624 (1015)
|.| ..|+- ..+++=-+.-.|+..||+. -|.|.|++.|-+|+..- |+ ...
T Consensus 282 gg~--TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~h---------------cg----Lp~---- 336 (736)
T COG2943 282 GGD--TLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIEH---------------CG----LPP---- 336 (736)
T ss_pred Ccc--hHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHHh---------------cC----CCC----
Confidence 433 22322 1334445677889999874 58999999998887411 11 000
Q ss_pred cchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccc
Q 039678 625 NSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTE 704 (1015)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~e 704 (1015)
+ .|. ...||
T Consensus 337 ------------L-------------------pG~---------~pFgG------------------------------- 345 (736)
T COG2943 337 ------------L-------------------PGR---------GPFGG------------------------------- 345 (736)
T ss_pred ------------C-------------------CCC---------CCCCc-------------------------------
Confidence 0 000 01233
Q ss_pred cccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhhcCCcccccccCCCCChh
Q 039678 705 LGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFSRHNPICYGCKEGKIKFL 784 (1015)
Q Consensus 705 vGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~~L~l~ 784 (1015)
..++.|+..+-.|.+.|| ++++.+.+...+++.|.|+-+++++-+||++|++|-+. ++ ..++|.+.
T Consensus 346 -----~ilSHDfvEAALmRRaGW-~v~ia~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~r-----l~---~~~GlHwv 411 (736)
T COG2943 346 -----HILSHDFVEAALMRRAGW-GVWIAYDLDGSYEELPPNLLDELKRDRRWCHGNLQHFR-----LF---LVKGLHWV 411 (736)
T ss_pred -----cccchHHHHHHHHhhcCc-eEEEeccCCCchhhCCchHHHHHhhhhHhhhcchhhce-----ee---ccCCccHH
Confidence 468899999999999999 55555677777999999999999999999999999875 33 24679999
Q ss_pred hhHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 039678 785 ERFAYINTTIYPFTSIPLLAYCLLPAICLL 814 (1015)
Q Consensus 785 QRL~Yl~~~ly~l~sl~~liylllP~l~Ll 814 (1015)
.|+.++.+++.|+.+...++++++..+...
T Consensus 412 sR~h~~tGVmsYlsaPlWfl~ll~g~al~~ 441 (736)
T COG2943 412 SRAHFLTGVMSYLSAPLWFLFLLLGTALQA 441 (736)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999988876655555554444433
No 33
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.80 E-value=1.9e-18 Score=180.22 Aligned_cols=168 Identities=20% Similarity=0.239 Sum_probs=112.3
Q ss_pred CCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccCCCcccchhhhHHHh
Q 039678 486 HNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDKSDRYSNRNRVF 565 (1015)
Q Consensus 486 hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vF 565 (1015)
+.+|++|+|.+++. +.++||+++|+|.+ +.|++|++++..|.|| +++.|+..+.+.+.+.+ .+......+
T Consensus 62 ~~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~~~-~~~~~~~~~ 131 (235)
T cd06434 62 HPGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPRDS-KWSFLAAEY 131 (235)
T ss_pred CCChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCccc-HHHHHHHHH
Confidence 34599999999986 58999999999999 5899999999988887 89999999888766321 111111111
Q ss_pred hhhh----hccccccCC-ccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhccchhhHHHHhhhhcch
Q 039678 566 FDIN----MKGLDGIQG-PMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKNSKANVIREAANLEGM 640 (1015)
Q Consensus 566 fdi~----~~gldg~qg-p~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1015)
+... .+.....++ ....|...++||++|.... .
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~------------------------------------------~ 169 (235)
T cd06434 132 LERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFL------------------------------------------F 169 (235)
T ss_pred HHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhh------------------------------------------h
Confidence 1110 111111111 1223444567777763110 0
Q ss_pred hhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccchHHHHH
Q 039678 641 EENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGF 720 (1015)
Q Consensus 641 ~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~ 720 (1015)
++ .+ . -+-.+|.+ ....||.+++.
T Consensus 170 ~~---------~~----------~---~~~~~~~~----------------------------------~~~~eD~~l~~ 193 (235)
T cd06434 170 LE---------EF----------T---NETFMGRR----------------------------------LNAGDDRFLTR 193 (235)
T ss_pred HH---------Hh----------h---hhhhcCCC----------------------------------CCcCchHHHHH
Confidence 00 00 0 00112222 26789999999
Q ss_pred HHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchh
Q 039678 721 KLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVE 763 (1015)
Q Consensus 721 rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQ 763 (1015)
+++.+||+.+|++.... +...|.++.++++||+||++|..+
T Consensus 194 ~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~q~~Rw~~~~~~ 234 (235)
T cd06434 194 YVLSHGYKTVYQYTSEA--YTETPENYKKFLKQQLRWSRSNWR 234 (235)
T ss_pred HHHHCCCeEEEecCCeE--EEEcchhHHHHHHHhhhhhhcccC
Confidence 99999999999977664 778999999999999999999854
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.78 E-value=9.2e-18 Score=177.36 Aligned_cols=223 Identities=19% Similarity=0.333 Sum_probs=154.2
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCC
Q 039678 300 PNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPR 379 (1015)
Q Consensus 300 ~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR 379 (1015)
.+..|.|.|+|||+| |+ ..+..++.|+++++||.+++.++|+|||+++-|.+.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-------------------- 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-------------------- 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--------------------
Confidence 456889999999999 76 778999999999999988899999999998743321111
Q ss_pred CcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccC
Q 039678 380 APEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGR 459 (1015)
Q Consensus 380 ~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~ 459 (1015)
|.+
T Consensus 81 -------------------------------~~~---------------------------------------------- 83 (251)
T cd06439 81 -------------------------------YAD---------------------------------------------- 83 (251)
T ss_pred -------------------------------Hhh----------------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcc
Q 039678 460 EGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKR 539 (1015)
Q Consensus 460 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~ 539 (1015)
. ++.++..+++ .+|++|+|.+++. .++++|+++|+|.++ .|++|++.+..|.++ +
T Consensus 84 ---------~--~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 84 ---------K--GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANALL-DPDALRLLVRHFADP----S 138 (251)
T ss_pred ---------C--cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccCc-CHHHHHHHHHHhcCC----C
Confidence 0 1444444432 3599999999996 578999999999996 699999999998776 6
Q ss_pred eEEEecCccccCCCcccchhhhHHHhhhh--hhccccccCCccccccccc--hhhhhhcCCCCCccCCCCCCCCCCCCCC
Q 039678 540 VCYVQFPQRFDGIDKSDRYSNRNRVFFDI--NMKGLDGIQGPMYVGTGCV--FRRQALYGHEPPKAAKRPRMGTCGCCPC 615 (1015)
Q Consensus 540 va~VQ~PQ~F~nid~~D~y~n~~~vFfdi--~~~gldg~qgp~yvGTGcv--fRR~ALyG~~p~~~~~~~~~~~~~~~~c 615 (1015)
+++|+......+.+. .......++.. .........+-.+.++||+ +||+++
T Consensus 139 ~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~---------------------- 193 (251)
T cd06439 139 VGAVSGELVIVDGGG---SGSGEGLYWKYENWLKRAESRLGSTVGANGAIYAIRRELF---------------------- 193 (251)
T ss_pred ccEEEeEEEecCCcc---cchhHHHHHHHHHHHHHHHHhcCCeeeecchHHHhHHHHh----------------------
Confidence 888888766554332 10000111110 0010111111122222322 344433
Q ss_pred cccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccc
Q 039678 616 FRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDY 695 (1015)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~Y 695 (1015)
+ |++
T Consensus 194 -----------------------------------------------------~---~~~-------------------- 197 (251)
T cd06439 194 -----------------------------------------------------R---PLP-------------------- 197 (251)
T ss_pred -----------------------------------------------------c---CCC--------------------
Confidence 2 221
Q ss_pred cccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhH
Q 039678 696 EDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEI 764 (1015)
Q Consensus 696 E~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQi 764 (1015)
.....||+++++++..+||+++|++.... +...|.++.++++|+.||+.|++|.
T Consensus 198 -------------~~~~~eD~~l~~~~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~g~~~~ 251 (251)
T cd06439 198 -------------ADTINDDFVLPLRIARQGYRVVYEPDAVA--YEEVAEDGSEEFRRRVRIAAGNLQA 251 (251)
T ss_pred -------------cccchhHHHHHHHHHHcCCeEEeccccEE--EEeCcccHHHHHHHHHHHHhccccC
Confidence 23567999999999999999999977654 8999999999999999999999983
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.77 E-value=8.3e-17 Score=183.68 Aligned_cols=243 Identities=19% Similarity=0.201 Sum_probs=152.4
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCC
Q 039678 300 PNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPR 379 (1015)
Q Consensus 300 ~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR 379 (1015)
++..|+|.|+||++| |. ..+..++-|++++|||. ++.|+|.|||+++-|.+.+.+. ++ +
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~~---~~-------~------ 94 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARAA---AR-------A------ 94 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHHH---HH-------h------
Confidence 457899999999999 86 67899999999999995 5899999999998554432221 00 0
Q ss_pred CcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccC
Q 039678 380 APEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGR 459 (1015)
Q Consensus 380 ~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~ 459 (1015)
.|.
T Consensus 95 ------------------------------------------------~~~----------------------------- 97 (384)
T TIGR03469 95 ------------------------------------------------YGR----------------------------- 97 (384)
T ss_pred ------------------------------------------------cCC-----------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhcccc-CceEEEEecCCCCCCchHHHHHHHHhhcCCCCCc
Q 039678 460 EGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLT-NSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGK 538 (1015)
Q Consensus 460 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavlt-ngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~ 538 (1015)
-+++.++..+.+|. ...+|+.|+|.+++.+.... .+++|+.+|+|.. .+|++|++++..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01345554433332 34679999999999742111 1899999999999 5899999999998776
Q ss_pred ceEEEecCccccCCCcccchhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCccc
Q 039678 539 RVCYVQFPQRFDGIDKSDRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRR 618 (1015)
Q Consensus 539 ~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~ 618 (1015)
++++|....++... ..+ .+. ..++.... + ..+|.+. ....+.
T Consensus 162 ~~~~vs~~~~~~~~---~~~-~~~------~~~~~~~~-----------~--~~~~~~~---~~~~~~------------ 203 (384)
T TIGR03469 162 GLDLVSLMVRLRCE---SFW-EKL------LIPAFVFF-----------F--QKLYPFR---WVNDPR------------ 203 (384)
T ss_pred CCCEEEecccccCC---CHH-HHH------HHHHHHHH-----------H--HHhcchh---hhcCCC------------
Confidence 34555543333211 111 110 00000000 0 0000000 000000
Q ss_pred chhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhccccccc
Q 039678 619 QKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDK 698 (1015)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~ 698 (1015)
....--.|+...++++++++.||+++
T Consensus 204 --------------------------------~~~~~~~G~~~lirr~~~~~vGGf~~---------------------- 229 (384)
T TIGR03469 204 --------------------------------RRTAAAAGGCILIRREALERIGGIAA---------------------- 229 (384)
T ss_pred --------------------------------ccceeecceEEEEEHHHHHHcCCHHH----------------------
Confidence 00000135666777788888998753
Q ss_pred CccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhh
Q 039678 699 TEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWA 758 (1015)
Q Consensus 699 T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA 758 (1015)
.+..+.||++++.++.++|+++.+...... +....-+++.+.++|+.||+
T Consensus 230 ---------~~~~~~ED~~L~~r~~~~G~~v~~~~~~~~-~s~r~~~~~~~~~~~~~r~~ 279 (384)
T TIGR03469 230 ---------IRGALIDDCTLAAAVKRSGGRIWLGLAART-RSLRPYDGLGEIWRMIARTA 279 (384)
T ss_pred ---------HhhCcccHHHHHHHHHHcCCcEEEEecCce-EEEEecCCHHHHHHHHHHhH
Confidence 124678999999999999999999865432 23455679999999999995
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.70 E-value=6.7e-16 Score=161.27 Aligned_cols=232 Identities=17% Similarity=0.177 Sum_probs=152.7
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccccc
Q 039678 306 VDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEMYF 385 (1015)
Q Consensus 306 VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~yF 385 (1015)
|.|+|||+| |+ ..+.+++-|+++.+||..+..++|+|||+++-|.+.+.
T Consensus 2 ~sIiip~~n---~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~--------------------------- 50 (249)
T cd02525 2 VSIIIPVRN---EE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ--------------------------- 50 (249)
T ss_pred EEEEEEcCC---ch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH---------------------------
Confidence 789999998 76 56799999999999997789999999998863211111
Q ss_pred ccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCCCC
Q 039678 386 SQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGHDA 465 (1015)
Q Consensus 386 s~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~d~ 465 (1015)
+ +.+
T Consensus 51 ---------------------------~-------~~~------------------------------------------ 54 (249)
T cd02525 51 ---------------------------E-------YAA------------------------------------------ 54 (249)
T ss_pred ---------------------------H-------HHh------------------------------------------
Confidence 1 100
Q ss_pred CCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEec
Q 039678 466 EGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQF 545 (1015)
Q Consensus 466 ~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~ 545 (1015)
..|.+.++..+ .+.+++|+|.+++. .++++|+++|+|.+ ..|++|.+++.++.++ ++..|+.
T Consensus 55 ---~~~~v~~i~~~------~~~~~~a~N~g~~~----a~~d~v~~lD~D~~-~~~~~l~~~~~~~~~~----~~~~v~~ 116 (249)
T cd02525 55 ---KDPRIRLIDNP------KRIQSAGLNIGIRN----SRGDIIIRVDAHAV-YPKDYILELVEALKRT----GADNVGG 116 (249)
T ss_pred ---cCCeEEEEeCC------CCCchHHHHHHHHH----hCCCEEEEECCCcc-CCHHHHHHHHHHHhcC----CCCEEec
Confidence 01235666533 23588999999996 58999999999999 5899999999888776 4555555
Q ss_pred CccccCCCcccchhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhcc
Q 039678 546 PQRFDGIDKSDRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKN 625 (1015)
Q Consensus 546 PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~ 625 (1015)
+....+. +.+.......+. .+ .+.+....+..... . ..
T Consensus 117 ~~~~~~~---~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~-------~------~~-------------- 154 (249)
T cd02525 117 PMETIGE---SKFQKAIAVAQS----------SP--LGSGGSAYRGGAVK-------I------GY-------------- 154 (249)
T ss_pred ceecCCC---ChHHHHHHHHhh----------ch--hccCCccccccccc-------c------cc--------------
Confidence 4332221 111110000000 00 00000000000000 0 00
Q ss_pred chhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCcccccc
Q 039678 626 SKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTEL 705 (1015)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~ev 705 (1015)
...|....++++++.+.||+++.
T Consensus 155 -----------------------------~~~~~~~~~~~~~~~~~g~~~~~---------------------------- 177 (249)
T cd02525 155 -----------------------------VDTVHHGAYRREVFEKVGGFDES---------------------------- 177 (249)
T ss_pred -----------------------------ccccccceEEHHHHHHhCCCCcc----------------------------
Confidence 01233345566677788887652
Q ss_pred ccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhh
Q 039678 706 GWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFS 767 (1015)
Q Consensus 706 Gw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~s 767 (1015)
-...||.+++++++++|+++.|++.... ....+.+++.+++|+.||+.|..|.+..
T Consensus 178 ----~~~~eD~~l~~r~~~~G~~~~~~~~~~~--~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 178 ----LVRNEDAELNYRLRKAGYKIWLSPDIRV--YYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred ----cCccchhHHHHHHHHcCcEEEEcCCeEE--EEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 1346999999999999999999977654 6778999999999999999999999984
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.66 E-value=9e-16 Score=156.72 Aligned_cols=138 Identities=28% Similarity=0.415 Sum_probs=103.8
Q ss_pred EEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccCCCcccchhhhHHHhhhhhh----ccccccCC-cccc
Q 039678 508 FILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDKSDRYSNRNRVFFDINM----KGLDGIQG-PMYV 582 (1015)
Q Consensus 508 ~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~----~gldg~qg-p~yv 582 (1015)
+|+++|+|..+ .+++|++++.+|.|| +++.||+|+.+++. ++...+.+..+|.... ...+..+. ....
T Consensus 1 ~v~~~DaDt~~-~~d~l~~~~~~~~~~----~~~~vq~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTRL-PPDFLERLVAALEDP----KVDAVQGPIIFRNR--GSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCCC-ChHHHHHHHHHHhCC----CceEEEccEEecCC--CChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 58999999995 799999999998888 89999999998732 3444444444443211 11122222 2345
Q ss_pred ccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhh
Q 039678 583 GTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAI 662 (1015)
Q Consensus 583 GTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~ 662 (1015)
|+|.++||+|+
T Consensus 74 G~~~~~r~~~l--------------------------------------------------------------------- 84 (193)
T PF13632_consen 74 GSGMLFRREAL--------------------------------------------------------------------- 84 (193)
T ss_pred CcceeeeHHHH---------------------------------------------------------------------
Confidence 66666666655
Q ss_pred hHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCccccc
Q 039678 663 FVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGS 742 (1015)
Q Consensus 663 f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~ 742 (1015)
+++||++. ..+++||+++++++.++||++.|++.+. ++.+
T Consensus 85 ------~~vg~~~~--------------------------------~~~~~ED~~l~~~l~~~G~~~~~~~~~~--~~~~ 124 (193)
T PF13632_consen 85 ------REVGGFDD--------------------------------PFSIGEDMDLGFRLRRAGYRIVYVPDAI--VYTE 124 (193)
T ss_pred ------HHhCcccc--------------------------------cccccchHHHHHHHHHCCCEEEEecccc--eeee
Confidence 46675440 4699999999999999999999997764 4899
Q ss_pred CCCCHHHHHHHhHHhhccc
Q 039678 743 APINLSDRLNQALRWALGS 761 (1015)
Q Consensus 743 aP~tl~~~l~QR~RWA~G~ 761 (1015)
+|.|+.++++||+||+.|.
T Consensus 125 ~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 125 APPTFRAFIRQRRRWARGA 143 (193)
T ss_pred CCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999998
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.60 E-value=1.2e-14 Score=149.51 Aligned_cols=115 Identities=17% Similarity=0.095 Sum_probs=82.3
Q ss_pred cEEEEecCCCCCCCCCCchhhhHHHHHHhc-------cccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEe
Q 039678 472 NLVYVSREKRPAFPHNKRAGAMNALVRVSG-------VLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQ 544 (1015)
Q Consensus 472 ~lvYvsRekrPg~~hh~KAGALNallrvSa-------vltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ 544 (1015)
++.++.++... .+..|++|+|.+++.+. .-..+++|+++|+|.. ..|++|+++..+|.|| +++.||
T Consensus 51 ~v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 46666654311 23469999999998631 0113589999999999 5899999988888888 799999
Q ss_pred cCccccCCCccc--c-hhhhHHHhhhhhhccccccCCccccccccchhhhhh
Q 039678 545 FPQRFDGIDKSD--R-YSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQAL 593 (1015)
Q Consensus 545 ~PQ~F~nid~~D--~-y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~AL 593 (1015)
.+.++.|.+.+- + +..+...++.+.+.++...+...+.|+|++|||+||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999998865431 1 222344445566777766665557889999999887
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.49 E-value=2.4e-13 Score=138.16 Aligned_cols=102 Identities=20% Similarity=0.134 Sum_probs=65.8
Q ss_pred CCCchhhhHHHHHHhc-cccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccCCCcccc---hhhh
Q 039678 486 HNKRAGAMNALVRVSG-VLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDKSDR---YSNR 561 (1015)
Q Consensus 486 hh~KAGALNallrvSa-vltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~---y~n~ 561 (1015)
+..|++|+|.+++... .-.++++|+++|+|.++ .|++|++++..|.+. ...||......+.+.+-. +.-.
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~-~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~~~~~~~~~~ 134 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNLV-DPNALEELNARFAAG-----ARVVQAYYNSKNPDDSWITRLYAFA 134 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCC-ChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccCHHHHHHHHH
Confidence 4569999999998631 12469999999999995 799999999988642 346887766655433211 1112
Q ss_pred HHHhhhhhhccccccCCc-cccccccchhhhhh
Q 039678 562 NRVFFDINMKGLDGIQGP-MYVGTGCVFRRQAL 593 (1015)
Q Consensus 562 ~~vFfdi~~~gldg~qgp-~yvGTGcvfRR~AL 593 (1015)
...++.+...++..+.+. ...|+|.+|||++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l 167 (183)
T cd06438 135 FLVFNRLRPLGRSNLGLSCQLGGTGMCFPWAVL 167 (183)
T ss_pred HHHHHHHHHHHHHHcCCCeeecCchhhhHHHHH
Confidence 223333344455545543 34677777777665
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.45 E-value=1.4e-12 Score=132.83 Aligned_cols=122 Identities=21% Similarity=0.267 Sum_probs=89.3
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccc
Q 039678 304 APVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEM 383 (1015)
Q Consensus 304 P~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~ 383 (1015)
|.|.|+|||+| |.+..+.+|+.|+++..|| .+.|+|+|||+++-|.+.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHHH------------------------
Confidence 57999999998 6667899999999999998 478999999987632221111
Q ss_pred ccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCC
Q 039678 384 YFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGH 463 (1015)
Q Consensus 384 yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~ 463 (1015)
+|.+
T Consensus 52 --------------------------~~~~-------------------------------------------------- 55 (202)
T cd04184 52 --------------------------KYAA-------------------------------------------------- 55 (202)
T ss_pred --------------------------HHHh--------------------------------------------------
Confidence 0100
Q ss_pred CCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhh-cCCCCCcceEE
Q 039678 464 DAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFL-MDPQTGKRVCY 542 (1015)
Q Consensus 464 d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff-~Dp~~g~~va~ 542 (1015)
..+++.++..+.+ ..++.|+|.+++. +.++||+.+|+|.+ +.|++|.+++-.| .+| ++++
T Consensus 56 -----~~~~~~~~~~~~~-----~g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 56 -----QDPRIKVVFREEN-----GGISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred -----cCCCEEEEEcccC-----CCHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 0013455544433 4589999999986 57899999999999 5899999999887 677 5677
Q ss_pred EecCccc
Q 039678 543 VQFPQRF 549 (1015)
Q Consensus 543 VQ~PQ~F 549 (1015)
|+.....
T Consensus 117 v~~~~~~ 123 (202)
T cd04184 117 IYSDEDK 123 (202)
T ss_pred EEccHHh
Confidence 7665443
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.37 E-value=1.3e-11 Score=125.93 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=51.2
Q ss_pred EEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhc-CCCCCcceEEEecCccccC
Q 039678 473 LVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLM-DPQTGKRVCYVQFPQRFDG 551 (1015)
Q Consensus 473 lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~-Dp~~g~~va~VQ~PQ~F~n 551 (1015)
+.|+.+++. .++++|+|.+++. +.|+||+.+|+|.+ ..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n-----~G~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKN-----RGLGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCcc-----ccHHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 566666553 3589999999996 68999999999999 47999999999884 55 6778877655443
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.27 E-value=2.6e-11 Score=124.96 Aligned_cols=155 Identities=25% Similarity=0.356 Sum_probs=109.0
Q ss_pred CCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccCCCcccchhhhHHHh
Q 039678 486 HNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDKSDRYSNRNRVF 565 (1015)
Q Consensus 486 hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vF 565 (1015)
-+.|..||.++++. . .++++|+++|+|+.+ +|++|++++..|.|| +++.|..+.++.+.+. -.+.-...|
T Consensus 15 ~N~Kv~nL~~~~~~-~--a~~d~~~~~DsDi~v-~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~~--~~~~l~~~~ 84 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA-G--AKYDYLVISDSDIRV-PPDYLRELVAPLADP----GVGLVTGLPRGVPARG--FWSRLEAAF 84 (175)
T ss_pred CChHHHHHHHHHHh-h--CCCCEEEEECCCeeE-CHHHHHHHHHHHhCC----CCcEEEecccccCCcC--HHHHHHHHH
Confidence 47899999999985 2 689999999999996 799999999999999 7899987766554432 111111122
Q ss_pred hhhhhccc-c-ccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhccchhhHHHHhhhhcchhhh
Q 039678 566 FDINMKGL-D-GIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKNSKANVIREAANLEGMEEN 643 (1015)
Q Consensus 566 fdi~~~gl-d-g~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1015)
+.. .++. . .-..++.
T Consensus 85 ~~~-~~~~~~a~~~~~~~-------------------------------------------------------------- 101 (175)
T PF13506_consen 85 FNF-LPGVLQALGGAPFA-------------------------------------------------------------- 101 (175)
T ss_pred HhH-HHHHHHHhcCCCce--------------------------------------------------------------
Confidence 211 1110 0 0011222
Q ss_pred hhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccchHHHHHHHH
Q 039678 644 KEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLH 723 (1015)
Q Consensus 644 ~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~ 723 (1015)
+|.+..|++++|+++||+.. ..+.++||+.+|-+++
T Consensus 102 -------------~G~~m~~rr~~L~~~GG~~~-------------------------------l~~~ladD~~l~~~~~ 137 (175)
T PF13506_consen 102 -------------WGGSMAFRREALEEIGGFEA-------------------------------LADYLADDYALGRRLR 137 (175)
T ss_pred -------------ecceeeeEHHHHHHcccHHH-------------------------------HhhhhhHHHHHHHHHH
Confidence 35556666677778888643 1147999999999999
Q ss_pred hCCcEEEEecCCCCcccccCC----CCHHHHHHHhHHhhc
Q 039678 724 SRGWRSIYCMPKRSAFKGSAP----INLSDRLNQALRWAL 759 (1015)
Q Consensus 724 ~~GwrsvY~~~~~~af~G~aP----~tl~~~l~QR~RWA~ 759 (1015)
.+|||++..+.... ....| .++.++++++.||++
T Consensus 138 ~~G~~v~~~~~~v~--~~~~~~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 138 ARGYRVVLSPYPVV--QTSVPRTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred HCCCeEEEcchhee--ecccCccccccHHHHHHHHHhhcC
Confidence 99999999864432 45555 589999999999985
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.23 E-value=1.7e-10 Score=115.97 Aligned_cols=54 Identities=20% Similarity=0.114 Sum_probs=42.5
Q ss_pred CchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHH-hhcCCCCCcceEEEecCcccc
Q 039678 488 KRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMC-FLMDPQTGKRVCYVQFPQRFD 550 (1015)
Q Consensus 488 ~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amc-ff~Dp~~g~~va~VQ~PQ~F~ 550 (1015)
.+++|+|.+++. .+++||+.+|+|.++ .++.+.+.+. +..++ +..+|.....+.
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~~-~~~~~~~~~~~~~~~~----~~~~v~g~~~~~ 116 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDTL-LPGALLAVVAAFAEHP----EVDVVYGDVLLV 116 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCccc-CchHHHHHHHHHHhCC----CccEEEeeeEEE
Confidence 589999999996 689999999999995 7899999884 44566 566666655444
No 44
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.20 E-value=4.6e-10 Score=123.42 Aligned_cols=109 Identities=19% Similarity=0.157 Sum_probs=83.7
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccccccc
Q 039678 308 IFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEMYFSQ 387 (1015)
Q Consensus 308 vfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~yFs~ 387 (1015)
|+|||+| |++..+.+|+.|+++..||.....|+|.|||+++-|.+.+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 7899999 887999999999999999866679999999998754432221
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCCCCCC
Q 039678 388 KVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGHDAEG 467 (1015)
Q Consensus 388 ~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~d~~~ 467 (1015)
+.. .
T Consensus 51 -------------------------~~~---------------------------------------------------~ 54 (299)
T cd02510 51 -------------------------EYY---------------------------------------------------K 54 (299)
T ss_pred -------------------------HHH---------------------------------------------------h
Confidence 000 0
Q ss_pred CCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcC
Q 039678 468 NELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMD 533 (1015)
Q Consensus 468 ~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~D 533 (1015)
...|++.++..+++ .+++.|.|.+++. +.|+||+.+|+|.++ .|++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~n-----~G~~~a~N~g~~~----A~gd~i~fLD~D~~~-~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKKR-----EGLIRARIAGARA----ATGDVLVFLDSHCEV-NVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCCC-----CCHHHHHHHHHHH----ccCCEEEEEeCCccc-CccHHHHHHHHHHh
Confidence 01134666665542 3589999999996 689999999999995 89999999987754
No 45
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.19 E-value=2.8e-10 Score=116.36 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=88.3
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCcccccc
Q 039678 307 DIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEMYFS 386 (1015)
Q Consensus 307 DvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~yFs 386 (1015)
.|+||||| |+ ..+.+++.|++.++|| ++.|+|+|||+.+-|.+.+.+. ++
T Consensus 1 sIvIp~yn---~~-~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~~---~~--------------------- 50 (214)
T cd04196 1 AVLMATYN---GE-KYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKEY---ID--------------------- 50 (214)
T ss_pred CEEEEecC---cH-HHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHHH---Hh---------------------
Confidence 47999998 66 7789999999999999 7899999999988554432221 00
Q ss_pred cccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCCCCC
Q 039678 387 QKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGHDAE 466 (1015)
Q Consensus 387 ~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~d~~ 466 (1015)
.||
T Consensus 51 -------------------------------------------------------------~~~---------------- 53 (214)
T cd04196 51 -------------------------------------------------------------KDP---------------- 53 (214)
T ss_pred -------------------------------------------------------------cCC----------------
Confidence 000
Q ss_pred CCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHh-hcCCCCCcceEEEec
Q 039678 467 GNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCF-LMDPQTGKRVCYVQF 545 (1015)
Q Consensus 467 ~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcf-f~Dp~~g~~va~VQ~ 545 (1015)
+.+.++..++ .+++++|+|.+++. ++++||+++|+|.+. .|+.|.+.+.. +.+| +.+++..
T Consensus 54 ----~~~~~~~~~~-----~~G~~~~~n~g~~~----~~g~~v~~ld~Dd~~-~~~~l~~~~~~~~~~~----~~~~~~~ 115 (214)
T cd04196 54 ----FIIILIRNGK-----NLGVARNFESLLQA----ADGDYVFFCDQDDIW-LPDKLERLLKAFLKDD----KPLLVYS 115 (214)
T ss_pred ----ceEEEEeCCC-----CccHHHHHHHHHHh----CCCCEEEEECCCccc-ChhHHHHHHHHHhcCC----CceEEec
Confidence 1244444444 34589999999885 789999999999995 79999999987 4555 6777777
Q ss_pred Ccccc
Q 039678 546 PQRFD 550 (1015)
Q Consensus 546 PQ~F~ 550 (1015)
...+.
T Consensus 116 ~~~~~ 120 (214)
T cd04196 116 DLELV 120 (214)
T ss_pred CcEEE
Confidence 65543
No 46
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.17 E-value=7.8e-10 Score=114.28 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=34.9
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCc
Q 039678 306 VDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASL 351 (1015)
Q Consensus 306 VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 351 (1015)
|.|+||++| |+. .+..++.|+++..|+ ...|+|+|||+.+
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCc
Confidence 579999998 764 789999999999984 6889999999876
No 47
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.16 E-value=5.5e-09 Score=123.72 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=47.4
Q ss_pred cccchHHHHHHHHhC--CcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhh
Q 039678 711 SVTEDILTGFKLHSR--GWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFF 766 (1015)
Q Consensus 711 svTED~~tg~rL~~~--GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~ 766 (1015)
.+.||-.++..|.++ |||..|++.+.+ +..+|++++.+++||+||..|.+--++
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~a--~T~aP~t~~vflsQRRRWinSTi~Nl~ 379 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAVA--YTDAPETFSVFLSQRRRWINSTIHNLF 379 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcccccc--cccCCccHHHHHHHhhhccchhHhhHh
Confidence 578999998878776 899999988876 899999999999999999999985543
No 48
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.16 E-value=1.3e-11 Score=101.23 Aligned_cols=48 Identities=38% Similarity=0.985 Sum_probs=30.5
Q ss_pred ccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 37 CEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 37 c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
|.+|.+++ |++|..|.|| ||+|.|||.||...++++++.||+||++||
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 77899997 8899999999 999999999999999889999999999996
No 49
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.15 E-value=1.9e-09 Score=114.95 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=45.9
Q ss_pred EEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecC
Q 039678 473 LVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFP 546 (1015)
Q Consensus 473 lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~P 546 (1015)
+.++.+++. .+|++|+|++++. +.++||+.+|+|.. .+|++|.+++..+.++ +..+|...
T Consensus 70 v~~~~~~~n-----~G~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 70 ILLRPRPGK-----LGLGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred EEEEecCCC-----CCHHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 555555443 3489999999986 68999999999999 5899999999888664 34555543
No 50
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.14 E-value=1.2e-09 Score=109.42 Aligned_cols=42 Identities=12% Similarity=0.302 Sum_probs=36.9
Q ss_pred CCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039678 487 NKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDP 534 (1015)
Q Consensus 487 h~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp 534 (1015)
..|++|+|.+++. ++++||+.+|+|.+ +.|++|.+.+-++ ++
T Consensus 65 ~~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 65 FRKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hhHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 3689999999996 68999999999998 5899999999887 44
No 51
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.13 E-value=1.1e-09 Score=106.87 Aligned_cols=51 Identities=24% Similarity=0.184 Sum_probs=41.1
Q ss_pred CCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhc-CCCCCcceEEEecC
Q 039678 487 NKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLM-DPQTGKRVCYVQFP 546 (1015)
Q Consensus 487 h~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~-Dp~~g~~va~VQ~P 546 (1015)
..+++|+|.+++. .++++|+.+|+|.++ .++++.+.+-.+. +| +++.|+..
T Consensus 60 ~g~~~a~n~~~~~----~~~~~i~~~D~D~~~-~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 60 LGFGAGNNQGIRE----AKGDYVLLLNPDTVV-EPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred cChHHHhhHHHhh----CCCCEEEEECCCcEE-CccHHHHHHHHHHhCC----CceEEEcc
Confidence 4589999999996 489999999999994 7999999887654 44 67776554
No 52
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.10 E-value=2.2e-09 Score=111.96 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=36.7
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhh
Q 039678 308 IFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFE 355 (1015)
Q Consensus 308 vfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~ 355 (1015)
|+||++| ++ ..+..++-|+++.+|| +...++|.|||+.+-|.+
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~~ 43 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKSAE 43 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHHH
Confidence 6799998 54 7999999999999998 468999999999875543
No 53
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.06 E-value=5.8e-09 Score=108.06 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=46.2
Q ss_pred EEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecC
Q 039678 473 LVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFP 546 (1015)
Q Consensus 473 lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~P 546 (1015)
+.++..+++ .+|++|+|.+++. +.+++|+.+|+|.. .+|++|...+..+.++ +...|..+
T Consensus 55 i~~~~~~~n-----~G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGK-----RGLGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCCC-----CChHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 445555543 3489999999996 67899999999998 5899999999987766 34455554
No 54
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.03 E-value=2.8e-09 Score=102.74 Aligned_cols=63 Identities=29% Similarity=0.459 Sum_probs=46.9
Q ss_pred EEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHH-hhcCCCCCcceEEEecCccc
Q 039678 473 LVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMC-FLMDPQTGKRVCYVQFPQRF 549 (1015)
Q Consensus 473 lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amc-ff~Dp~~g~~va~VQ~PQ~F 549 (1015)
++++..++. .+|+.|+|.+++. .++++|+++|+|.++ .|++|.+.+. ++.++ +++.|......
T Consensus 55 ~~~~~~~~~-----~g~~~~~n~~~~~----~~~~~i~~~D~D~~~-~~~~l~~~~~~~~~~~----~~~~v~~~~~~ 118 (180)
T cd06423 55 VLVVRDKEN-----GGKAGALNAGLRH----AKGDIVVVLDADTIL-EPDALKRLVVPFFADP----KVGAVQGRVRV 118 (180)
T ss_pred EEEEEeccc-----CCchHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHhccCC----CeeeEeeeEEE
Confidence 455555543 3499999999996 589999999999995 7999999844 55565 56666654443
No 55
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.02 E-value=1.9e-09 Score=112.87 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=38.1
Q ss_pred EEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHH
Q 039678 473 LVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAM 528 (1015)
Q Consensus 473 lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~am 528 (1015)
+.++..++..| +|+|+|.+++.+.- .+++||+.+|+|.++ +|++|.+++
T Consensus 49 i~~i~~~~n~G-----~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~-~~~~l~~l~ 97 (237)
T cd02526 49 IELIHLGENLG-----IAKALNIGIKAALE-NGADYVLLFDQDSVP-PPDMVEKLL 97 (237)
T ss_pred EEEEECCCcee-----hHHhhhHHHHHHHh-CCCCEEEEECCCCCc-CHhHHHHHH
Confidence 66676665433 99999999986321 256999999999995 799999985
No 56
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.02 E-value=4.8e-09 Score=107.54 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=44.7
Q ss_pred EEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEE
Q 039678 473 LVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYV 543 (1015)
Q Consensus 473 lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~V 543 (1015)
+.|+.-++. ++.+.++|.+++..- ...+++++.+|+|.++ +|++|++++..+.+| +++.|
T Consensus 53 i~~~~~~~n-----~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~~-~~~~l~~l~~~~~~~----~~~~~ 112 (202)
T cd04185 53 IVYLRLPEN-----LGGAGGFYEGVRRAY-ELGYDWIWLMDDDAIP-DPDALEKLLAYADKD----NPQFL 112 (202)
T ss_pred eEEEECccc-----cchhhHHHHHHHHHh-ccCCCEEEEeCCCCCc-ChHHHHHHHHHHhcC----CceEe
Confidence 455555442 347888998887532 3578999999999995 899999999888776 56655
No 57
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.92 E-value=1.2e-09 Score=105.53 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=72.5
Q ss_pred cEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccC
Q 039678 472 NLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDG 551 (1015)
Q Consensus 472 ~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 551 (1015)
++.|+.+++ +. ++++|+|.+++. ..++||+.+|+|.++ .+++|.+.+.++.++. ..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~~-~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDII-SPDWLEELVEALEKNP--PDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEEE--TTHHHHHHHHHHHCT--TEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCceE-cHHHHHHHHHHHHhCC--CcEEEEEEEEecCC
Confidence 488999887 33 699999999996 688899999999996 6889999999998741 23443333333332
Q ss_pred CCcccchh--hhHHHhhhhhhccccccCCccccccccchhhhhhc
Q 039678 552 IDKSDRYS--NRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALY 594 (1015)
Q Consensus 552 id~~D~y~--n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALy 594 (1015)
........ ......+............+.++|.+.++||+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 22211110 01122333344445566678899999999999984
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.86 E-value=3.2e-08 Score=102.71 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=45.3
Q ss_pred EEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCcc
Q 039678 474 VYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQR 548 (1015)
Q Consensus 474 vYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~ 548 (1015)
.++..++.. +|++|+|.+++. +.+++|+.+|+|.. .+|+++.+++..+.++ ....|..+..
T Consensus 60 ~~i~~~~n~-----G~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~ 120 (211)
T cd04188 60 RVLTLPKNR-----GKGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRA 120 (211)
T ss_pred EEEEcccCC-----CcHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEee
Confidence 455544432 499999999996 67899999999999 5899999999887654 2344544433
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.77 E-value=1.4e-07 Score=106.31 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=84.0
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCc
Q 039678 302 MLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAP 381 (1015)
Q Consensus 302 ~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~P 381 (1015)
..|.|.|+||+|| ++ ..+..++.|+++..|+ .+.|+|.|||+++-|.+.+.+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~~~---------------------- 55 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIAKH---------------------- 55 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHHHH----------------------
Confidence 3578999999998 55 6889999999999997 589999999998754332211
Q ss_pred ccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCC
Q 039678 382 EMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREG 461 (1015)
Q Consensus 382 e~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g 461 (1015)
|.+
T Consensus 56 -----------------------------~~~------------------------------------------------ 58 (328)
T PRK10073 56 -----------------------------YAE------------------------------------------------ 58 (328)
T ss_pred -----------------------------HHh------------------------------------------------
Confidence 110
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039678 462 GHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDP 534 (1015)
Q Consensus 462 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp 534 (1015)
..|++.++..+ +.+.++|.|.++.. ..|+||+.+|+|.++ .|+.|.+.+..+.++
T Consensus 59 -------~~~~i~vi~~~------n~G~~~arN~gl~~----a~g~yi~flD~DD~~-~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA------NAGVSVARNTGLAV----ATGKYVAFPDADDVV-YPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC------CCChHHHHHHHHHh----CCCCEEEEECCCCcc-ChhHHHHHHHHHHhC
Confidence 01245555432 34589999999996 789999999999995 799999998877543
No 60
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.72 E-value=1.4e-07 Score=94.62 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=50.2
Q ss_pred EEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccC
Q 039678 473 LVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDG 551 (1015)
Q Consensus 473 lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 551 (1015)
+.++..+++.| |++|+|.+++. +.+++|+.+|+|-.+ .|++|.+.+..+..+ ...+|+.+....+
T Consensus 56 ~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADLQH-PPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCCCC-CHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 45565555444 99999999986 678999999999985 899999999886654 4567777765544
No 61
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.67 E-value=3.2e-07 Score=99.93 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=49.0
Q ss_pred cEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccc
Q 039678 472 NLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRF 549 (1015)
Q Consensus 472 ~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F 549 (1015)
.+.|+.-++.- +.|+|+|.+++.. .-.+++||+.+|.|.++ .+++|.+.+..+..+ +.+++.|. |..+
T Consensus 46 ~i~~i~~~~N~-----G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 46 KIALIHLGDNQ-----GIAGAQNQGLDAS-FRRGVQGVLLLDQDSRP-GNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred CeEEEECCCCc-----chHHHHHHHHHHH-HHCCCCEEEEECCCCCC-CHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 46677655433 4899999999863 11368999999999995 799999999887532 22677776 4433
No 62
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.65 E-value=3.8e-07 Score=101.00 Aligned_cols=51 Identities=10% Similarity=0.211 Sum_probs=42.3
Q ss_pred cEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhc
Q 039678 472 NLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLM 532 (1015)
Q Consensus 472 ~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~ 532 (1015)
++.|+..++. .+++.|+|.++.. ++|+||+.+|+|.+. .|+.|.+.+-++.
T Consensus 61 ri~~i~~~~n-----~G~~~a~N~gi~~----a~g~~I~~lDaDD~~-~p~~l~~~~~~~~ 111 (279)
T PRK10018 61 RITYIHNDIN-----SGACAVRNQAIML----AQGEYITGIDDDDEW-TPNRLSVFLAHKQ 111 (279)
T ss_pred CEEEEECCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCCC-CccHHHHHHHHHH
Confidence 5777776653 3589999999986 789999999999995 7999998888764
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.64 E-value=6.6e-07 Score=97.10 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=37.6
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcC-CCCCCCcEEEEecCCCCchhhh
Q 039678 304 APVDIFVTTVDPMKEPPLVTANTILSVLAM-DYPVDKISCYISDDGASLLSFE 355 (1015)
Q Consensus 304 P~VDvfV~T~dP~kEpp~v~~nTvls~la~-DYP~~kl~~yvsDDG~s~~T~~ 355 (1015)
|.|.|+||||| |+ ..+..|+.|++++ ..+...+.++|.|||+++-|.+
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~ 49 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTRE 49 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHH
Confidence 56899999998 65 5789999999864 2333478999999999885544
No 64
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.49 E-value=2.5e-06 Score=105.13 Aligned_cols=48 Identities=31% Similarity=0.402 Sum_probs=45.1
Q ss_pred cccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhcc
Q 039678 711 SVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALG 760 (1015)
Q Consensus 711 svTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G 760 (1015)
+..||-.+..++..+||+.-|+..+.+ ..++|+++..++.||+||..|
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~a--~t~~Pe~~~efl~QrrRW~~s 596 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASDA--ETEAPESFLEFLNQRRRWLNS 596 (862)
T ss_pred ccchhHHHHHHHHhccceeeeeccccc--cccCcHhHHHHHHHhhhhccc
Confidence 589999999999999999999977654 899999999999999999999
No 65
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.49 E-value=2.7e-06 Score=80.08 Aligned_cols=52 Identities=27% Similarity=0.332 Sum_probs=41.1
Q ss_pred CCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHH-hhcCCCCCcceEEEecC
Q 039678 486 HNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMC-FLMDPQTGKRVCYVQFP 546 (1015)
Q Consensus 486 hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amc-ff~Dp~~g~~va~VQ~P 546 (1015)
+..|++++|.++.. .++++++++|+|.++ .|+++...+- +..++ +...|+.+
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~~-~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDLL-LPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCcc-CccHHHHHHHHHhcCC----CceEEecc
Confidence 34599999999986 479999999999995 7899988744 44555 67777776
No 66
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.48 E-value=1.8e-06 Score=87.24 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=62.6
Q ss_pred cEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccC
Q 039678 472 NLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDG 551 (1015)
Q Consensus 472 ~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 551 (1015)
++.|+..++ +.+|++|+|++++. +.+++|+.+|+|... .+++|.+++.. +++. .++.+..... .+
T Consensus 56 ~i~~i~~~~-----n~G~~~a~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~l~~~-~~~~--~~~v~g~~~~--~~ 120 (181)
T cd04187 56 RVKVIRLSR-----NFGQQAALLAGLDH----ARGDAVITMDADLQD-PPELIPEMLAK-WEEG--YDVVYGVRKN--RK 120 (181)
T ss_pred CEEEEEecC-----CCCcHHHHHHHHHh----cCCCEEEEEeCCCCC-CHHHHHHHHHH-HhCC--CcEEEEEecC--Cc
Confidence 355655544 23599999999986 678999999999994 89999999987 4432 2344332221 11
Q ss_pred CCcccchhhhHHHhhhhhhccccccCCccccccccchhhhhhc
Q 039678 552 IDKSDRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALY 594 (1015)
Q Consensus 552 id~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALy 594 (1015)
.....++.+. .++. ......+..-+...|+..++||+++.
T Consensus 121 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 ESWLKRLTSK--LFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred chHHHHHHHH--HHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 1111111111 1111 11222334445566777889999985
No 67
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.40 E-value=1e-05 Score=90.04 Aligned_cols=122 Identities=22% Similarity=0.292 Sum_probs=88.6
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCcc
Q 039678 303 LAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPE 382 (1015)
Q Consensus 303 lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe 382 (1015)
-|.+-+.|.||+ +...+.+.+-++.+.+||.+. +++.|+|+.+.|.+.+.+.
T Consensus 2 ~~~i~~iiv~yn----~~~~l~~~l~~l~~~~~~~~~--iv~vDn~s~d~~~~~~~~~---------------------- 53 (305)
T COG1216 2 MPKISIIIVTYN----RGEDLVECLASLAAQTYPDDV--IVVVDNGSTDGSLEALKAR---------------------- 53 (305)
T ss_pred CcceEEEEEecC----CHHHHHHHHHHHhcCCCCCcE--EEEccCCCCCCCHHHHHhh----------------------
Confidence 367889999998 468999999999999999753 3378988887543322210
Q ss_pred cccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCC
Q 039678 383 MYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGG 462 (1015)
Q Consensus 383 ~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~ 462 (1015)
T Consensus 54 -------------------------------------------------------------------------------- 53 (305)
T COG1216 54 -------------------------------------------------------------------------------- 53 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCce-EEEEecCCCCCCchHHHHHHHHhhc-CCCCCcce
Q 039678 463 HDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSS-FILNLDCDHYVNNSKAVREAMCFLM-DPQTGKRV 540 (1015)
Q Consensus 463 ~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp-~Il~lDcD~~~~~~~~Lr~amcff~-Dp~~g~~v 540 (1015)
..|.+.|+.-.+.-|+ ||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+. +| .+
T Consensus 54 ------~~~~v~~i~~~~NlG~-----agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~ 115 (305)
T COG1216 54 ------FFPNVRLIENGENLGF-----AGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AA 115 (305)
T ss_pred ------cCCcEEEEEcCCCccc-----hhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CC
Confidence 0234667766666665 89999888763 24544 9999999977 58999999998774 44 67
Q ss_pred EEEecCcccc
Q 039678 541 CYVQFPQRFD 550 (1015)
Q Consensus 541 a~VQ~PQ~F~ 550 (1015)
+.|+.-.+.+
T Consensus 116 ~~~~~~i~~~ 125 (305)
T COG1216 116 GVVGPLIRNY 125 (305)
T ss_pred eEeeeeEecC
Confidence 7887665543
No 68
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.39 E-value=9.3e-06 Score=89.53 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=45.2
Q ss_pred CCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEEecCccccCCCc
Q 039678 487 NKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYVQFPQRFDGIDK 554 (1015)
Q Consensus 487 h~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~ 554 (1015)
-.+|.|.|.++.. +++++|+.+|+|.++ .|+++.+++-+...=.. ..-+++-.|..+.+.+.
T Consensus 74 f~~a~arN~g~~~----A~~d~l~flD~D~i~-~~~~i~~~~~~~~~l~~-~~~~~~~~p~~yl~~~~ 135 (281)
T PF10111_consen 74 FSRAKARNIGAKY----ARGDYLIFLDADCIP-SPDFIEKLLNHVKKLDK-NPNAFLVYPCLYLSEEG 135 (281)
T ss_pred cCHHHHHHHHHHH----cCCCEEEEEcCCeee-CHHHHHHHHHHHHHHhc-CCCceEEEeeeeccchh
Confidence 3699999999986 799999999999995 79999999993211000 12355666777665443
No 69
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.39 E-value=1e-05 Score=91.68 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=35.9
Q ss_pred CCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcC
Q 039678 487 NKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMD 533 (1015)
Q Consensus 487 h~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~D 533 (1015)
.+|++|+|++++. +.|++|+++|+|.. .+++.+.+.+..+.+
T Consensus 148 ~G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 148 KGKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred CChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 3599999999996 67999999999998 589998888877653
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.31 E-value=7.2e-06 Score=91.99 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=42.4
Q ss_pred CCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhc-CCCCCcceEEEec
Q 039678 487 NKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLM-DPQTGKRVCYVQF 545 (1015)
Q Consensus 487 h~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~-Dp~~g~~va~VQ~ 545 (1015)
.+|++|+|.+++. +++++|+.+|||....+|++|.+.+..+. || ++++|..
T Consensus 101 ~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 4699999999986 68999999999996348999999998775 77 5667764
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.81 E-value=0.0002 Score=81.12 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhc
Q 039678 487 NKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLM 532 (1015)
Q Consensus 487 h~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~ 532 (1015)
.+|++|+|++++. +.|++++.+|||.. .+|+.+.+.+..+.
T Consensus 76 ~G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 76 YGQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CCHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 3699999999986 68999999999999 58999999888764
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.58 E-value=0.0012 Score=74.88 Aligned_cols=157 Identities=27% Similarity=0.426 Sum_probs=109.0
Q ss_pred CCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCCCCCcceEEE-ecCccccCCCcccchhhhHHHh
Q 039678 487 NKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDPQTGKRVCYV-QFPQRFDGIDKSDRYSNRNRVF 565 (1015)
Q Consensus 487 h~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp~~g~~va~V-Q~PQ~F~nid~~D~y~n~~~vF 565 (1015)
+-|-.||=-+.|. ...|+|++.|.|-.+ .||.+....-=||.|+ ++|+| |+|-.++-.-
T Consensus 156 npKInN~mpgy~~----a~ydlvlisDsgI~m-~pdtildm~t~M~she---kmalvtq~py~~dr~G------------ 215 (431)
T KOG2547|consen 156 NPKINNMMPGYRA----AKYDLVLISDSGIFM-KPDTILDMATTMMSHE---KMALVTQTPYCKDRQG------------ 215 (431)
T ss_pred ChhhhccCHHHHH----hcCCEEEEecCCeee-cCchHHHHHHhhhccc---ceeeecCCceeecccc------------
Confidence 4577777777786 688999999999996 8999998888888775 89998 6776654211
Q ss_pred hhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCCCCCCcccchhhhccchhhHHHHhhhhcchhhhhh
Q 039678 566 FDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCGCCPCFRRQKQYQKNSKANVIREAANLEGMEENKE 645 (1015)
Q Consensus 566 fdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1015)
|+. --.-+|-||. +-|--|-|- .... .|.
T Consensus 216 f~a-------tle~~~fgTs--h~r~yl~~n----------~~~~---~c~----------------------------- 244 (431)
T KOG2547|consen 216 FDA-------TLEQVYFGTS--HPRIYLSGN----------VLGF---NCS----------------------------- 244 (431)
T ss_pred chh-------hhhheeeccC--CceEEEccc----------cccc---ccc-----------------------------
Confidence 111 0011444443 223222110 0000 122
Q ss_pred hhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccchHHHHHHHHhC
Q 039678 646 HLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSR 725 (1015)
Q Consensus 646 ~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~ 725 (1015)
-|-|...+++++.|.||+... | +.+.||+..+=.+..+
T Consensus 245 -----------tgms~~mrK~~ld~~ggi~~f----------------------------~---~yLaedyFaaksllSR 282 (431)
T KOG2547|consen 245 -----------TGMSSMMRKEALDECGGISAF----------------------------G---GYLAEDYFAAKSLLSR 282 (431)
T ss_pred -----------ccHHHHHHHHHHHHhccHHHH----------------------------H---HHHHHHHHHHHHHHhh
Confidence 255678888999999997542 2 3899999999999999
Q ss_pred CcEEEEecCCCCcccccCCCCHHHHHHHhHHhh
Q 039678 726 GWRSIYCMPKRSAFKGSAPINLSDRLNQALRWA 758 (1015)
Q Consensus 726 GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA 758 (1015)
||++.+...... ...+-.+...+..|-.||.
T Consensus 283 G~ksaist~pal--QnSas~~mssf~~Ri~rwv 313 (431)
T KOG2547|consen 283 GWKSAISTHPAL--QNSASVTMSSFLDRIIRWV 313 (431)
T ss_pred hhhhhhcccchh--hhhhhhHHHHHHHHHHHhh
Confidence 999999975443 6777788999999999997
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.0015 Score=62.39 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=40.8
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhh
Q 039678 303 LAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFE 355 (1015)
Q Consensus 303 lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~ 355 (1015)
.|.+.|+|||+| |+ .....+|.|++...|+. ..+.|.|||+++-|-+
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~ 48 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTE 48 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHH
Confidence 578999999999 66 89999999999999996 5699999999985433
No 74
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=97.21 E-value=0.0026 Score=67.65 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=36.0
Q ss_pred CchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039678 488 KRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDP 534 (1015)
Q Consensus 488 ~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp 534 (1015)
..+.+.|.++.. ..+++|+.+|+|..+ .|+.+.+...++.++
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~~~-~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADERL-TPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCcCc-CHHHHHHHHHHHhCC
Confidence 479999999985 678999999999995 899999988887654
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.80 E-value=0.00054 Score=76.25 Aligned_cols=48 Identities=29% Similarity=0.933 Sum_probs=43.4
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
.|..|=+.+-.+ ..-|.+| -|||.|||.||.--|.+=|+.||.|+..|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 599999997665 4569999 99999999999999999999999999999
No 76
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.59 E-value=0.0078 Score=51.31 Aligned_cols=46 Identities=37% Similarity=0.924 Sum_probs=37.8
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCC--Ccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQ--CKTRY 86 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~--Ckt~y 86 (1015)
.+..|.+||+++-. |++.|.|.+|+=|-=|+||+++ +.|-- |++++
T Consensus 4 ~~~~C~~Cg~~~~~---~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFKD---GDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcccC---CCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 35689999999754 8899999999999999999876 45655 77665
No 77
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.41 E-value=0.016 Score=65.36 Aligned_cols=59 Identities=24% Similarity=0.528 Sum_probs=51.0
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccccCCC
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRIKGSP 93 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kgsp 93 (1015)
..+.|.+|-.+..++.+=.+++. +||-..|+.|.+---..|.+.||+|+++.++.+-.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 45799999999999888888887 999999999998877789899999999998764333
No 78
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=95.33 E-value=0.3 Score=61.33 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=52.9
Q ss_pred cccchHHHHHHHHhCCcEEEEecCCCCcccccCCC-CHHHHHHHhHHhhccchhHhhhcCCcccccccCCCCChhhhHHh
Q 039678 711 SVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPI-NLSDRLNQALRWALGSVEIFFSRHNPICYGCKEGKIKFLERFAY 789 (1015)
Q Consensus 711 svTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~-tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~~L~l~QRL~Y 789 (1015)
.++||+..|+....||-++.++. -.. .|..-+ .+..-+.=-..-+.|+=+..+||.- + +.+.+|.+.+-+++
T Consensus 409 hLsEDIfaG~n~~lRGG~i~h~e-y~q--cGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~---y-rLg~~ld~~R~LSf 481 (817)
T PF02364_consen 409 HLSEDIFAGMNATLRGGRIKHCE-YIQ--CGKGRDVGFNSILNFETKIASGMGEQMLSREY---Y-RLGTRLDFFRFLSF 481 (817)
T ss_pred cccHHHHHHHHHHhcCCceeehh-hhh--cccccccCchhhhhhHhHhcCCccchhhhHHH---H-HhhccCCHHHHHHH
Confidence 89999999999999999999984 333 243322 2223333345678999999888741 1 12456888877764
Q ss_pred hh-hhhhhhhhH
Q 039678 790 IN-TTIYPFTSI 800 (1015)
Q Consensus 790 l~-~~ly~l~sl 800 (1015)
.. +.-+++..+
T Consensus 482 yy~~~Gf~~n~~ 493 (817)
T PF02364_consen 482 YYAHPGFYINNM 493 (817)
T ss_pred HhcCccHhHhhH
Confidence 33 333444443
No 79
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=95.22 E-value=0.22 Score=57.26 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=34.7
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCc
Q 039678 307 DIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASL 351 (1015)
Q Consensus 307 DvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 351 (1015)
-|+|.||| - |.-+.+|+.|+++..+-.+...+||++||+..
T Consensus 3 PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47888887 4 58999999999998755568899999999875
No 80
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=92.85 E-value=0.62 Score=49.49 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=38.6
Q ss_pred cEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039678 472 NLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDP 534 (1015)
Q Consensus 472 ~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp 534 (1015)
++.-..|.+.-|. .-|--+++.. ..|+|+++.|||-- .+|+++-+......+-
T Consensus 64 ~i~l~pR~~klGL-----gtAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 64 NILLKPRTKKLGL-----GTAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKEG 116 (238)
T ss_pred cEEEEeccCcccc-----hHHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhcc
Confidence 5777888874442 2244445554 68999999999998 6899999987766553
No 81
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=88.01 E-value=0.49 Score=36.63 Aligned_cols=44 Identities=32% Similarity=0.788 Sum_probs=32.8
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTR 85 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ 85 (1015)
.|.||.++. .+.+. ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 22222 234899999999977666678899999975
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.69 E-value=0.34 Score=48.52 Aligned_cols=52 Identities=33% Similarity=0.836 Sum_probs=38.5
Q ss_pred ccccccCccccccCCCCeeeccCC-CCCccchhhhHHHHh--hCCCCCCCCcccccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEE-CGFPVCRPCYEYERR--EGTQLCPQCKTRYKRIK 90 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~e-c~fpvCr~Cyeyer~--eG~~~Cp~Ckt~ykr~k 90 (1015)
--|.||.|. ..-+-|.-=|| |||.||--||--=.| .-.-+||-|||-||..+
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 369999874 22344665455 599999999976666 45589999999998653
No 83
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=85.60 E-value=4.8 Score=45.41 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=30.6
Q ss_pred CCchhhhHHHHHHhccccCceEEEEecCCCC--CCchHHHHHHHHhhc
Q 039678 487 NKRAGAMNALVRVSGVLTNSSFILNLDCDHY--VNNSKAVREAMCFLM 532 (1015)
Q Consensus 487 h~KAGALNallrvSavltngp~Il~lDcD~~--~~~~~~Lr~amcff~ 532 (1015)
.+|.||..-++-. +.|.+|+..|||-- .++-..|.++|.=..
T Consensus 143 rgKGgAvR~g~l~----~rG~~ilfadAdGaTkf~d~ekLe~al~~~~ 186 (323)
T KOG2977|consen 143 RGKGGAVRKGMLS----SRGQKILFADADGATKFADLEKLEKALNDKA 186 (323)
T ss_pred CCCCcceehhhHh----ccCceEEEEcCCCCccCCCHHHHHHHHHhhc
Confidence 3488888866554 68999999999953 356677888876444
No 84
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=81.26 E-value=1.5 Score=37.32 Aligned_cols=44 Identities=16% Similarity=0.017 Sum_probs=34.0
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
+|.||++- +.+ +.+ ..||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~-~~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEV-MKD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCc-CCC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 69999986 333 333 368999999999887766 688999998873
No 85
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=77.66 E-value=2.3 Score=45.39 Aligned_cols=63 Identities=27% Similarity=0.524 Sum_probs=41.3
Q ss_pred EeccCCCCCC-CCCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHh---------------hCCCCCCCC
Q 039678 19 LIHNHEEPKP-WKSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERR---------------EGTQLCPQC 82 (1015)
Q Consensus 19 ~~~~~~~~~~-~~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~---------------eG~~~Cp~C 82 (1015)
.|+.|++... +...+.-.|.||-|.+- ++.+ -.|+--.|++|-+.-.. .+...||-|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvC 74 (193)
T PLN03208 2 EIEKDEDDTTLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVC 74 (193)
T ss_pred CcccccccceeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCC
Confidence 3556665433 33445569999998752 2333 26899999999963211 134689999
Q ss_pred cccccc
Q 039678 83 KTRYKR 88 (1015)
Q Consensus 83 kt~ykr 88 (1015)
+++...
T Consensus 75 R~~Is~ 80 (193)
T PLN03208 75 KSDVSE 80 (193)
T ss_pred CCcCCh
Confidence 999854
No 86
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=75.79 E-value=1.3 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=17.8
Q ss_pred chhhhHHHHhhCCCCCCCCcccccc
Q 039678 64 CRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 64 Cr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
|.-|- .+...|..-||+|+++-..
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CCCCC-CCCCcccccccccCCcccc
Confidence 55554 4467888999999998653
No 87
>PHA02929 N1R/p28-like protein; Provisional
Probab=75.24 E-value=3.2 Score=45.75 Aligned_cols=55 Identities=20% Similarity=0.538 Sum_probs=39.5
Q ss_pred CCCccccccCccccccCC-CCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 32 LDGQVCEICGDEIGKMAN-GDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~-g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
.....|.||.+.+..++- ...+..-..|+=.-|+.|..- -.+.++.||-|++++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~-Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDI-WKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHH-HHhcCCCCCCCCCEee
Confidence 456799999998764431 112333347899999999954 4556789999999875
No 88
>PHA02862 5L protein; Provisional
Probab=73.60 E-value=2.3 Score=43.34 Aligned_cols=48 Identities=27% Similarity=0.525 Sum_probs=32.0
Q ss_pred CccccccCccccccCCCCeeeccCCC---CCccchhhhHHH-HhhCCCCCCCCccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEEC---GFPVCRPCYEYE-RREGTQLCPQCKTRYK 87 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec---~fpvCr~Cyeye-r~eG~~~Cp~Ckt~yk 87 (1015)
+.+|-||-++ +++..-|| .| .==|=+.|.+-= ...++..|++||++|.
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4689999876 23446788 45 112335665433 3377799999999995
No 89
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=73.43 E-value=2 Score=35.40 Aligned_cols=26 Identities=31% Similarity=0.839 Sum_probs=20.9
Q ss_pred cccccCccccccCCCCeeeccCCCCCcc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPV 63 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpv 63 (1015)
+|.-||.++.++.. .-+-|.+|++.|
T Consensus 4 ~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 4 ICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred ECCCCCCEeecCCC--CceECCCCCceE
Confidence 69999999888743 348899999876
No 90
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=73.03 E-value=2.6 Score=48.20 Aligned_cols=52 Identities=33% Similarity=0.834 Sum_probs=43.2
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
...|.+|++.. +.+-..|+|| -|+|-+|-+|--- .-++++.||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~~t-~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCHKT-ISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhhhc-ccccCCCCCccCCccccC
Confidence 36899999984 4555679999 9999999999943 468999999999999764
No 91
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=72.33 E-value=2.7 Score=32.48 Aligned_cols=26 Identities=38% Similarity=0.975 Sum_probs=18.7
Q ss_pred cccccCccccccCCCCeeeccCCCCCcc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPV 63 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpv 63 (1015)
+|.-||.++.+.. ++ -+-|.+|++.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6899999999654 33 37999999875
No 92
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=72.09 E-value=2.9 Score=33.57 Aligned_cols=43 Identities=28% Similarity=0.704 Sum_probs=33.3
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCK 83 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ck 83 (1015)
.|.||-+++.. ++..+... |+=-.|+.|.+--.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 67777774 9999999999655544 57999996
No 93
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.95 E-value=4.2 Score=44.44 Aligned_cols=46 Identities=35% Similarity=0.798 Sum_probs=37.5
Q ss_pred ccccccCccccccCCCCeeeccCCCCCccchhhhHHH---HhhCCCCCCCCcccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYE---RREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeye---r~eG~~~Cp~Ckt~ykr 88 (1015)
--|.||=|.+ =|+.|-| ||---|.||. |- ....++.||=||..-..
T Consensus 48 FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 48 FDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred eeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCcccccccc
Confidence 4799997764 3578888 9999999998 76 56888999999988654
No 94
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=69.49 E-value=2.1 Score=36.94 Aligned_cols=47 Identities=36% Similarity=0.748 Sum_probs=34.1
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
..|.|-.|+..-.. ..+.+ |+=-||+-|+.-||-.| ||=|++|+...
T Consensus 6 ~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 34566667765222 13444 59999999999998877 99999999654
No 95
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=67.32 E-value=1.2e+02 Score=41.12 Aligned_cols=81 Identities=23% Similarity=0.284 Sum_probs=50.4
Q ss_pred cccchHHHHHHHHhCCcEEEEecCCCCcc----cccCCCCHHHHHHHhHHhhccchhHhhhcCCcccccccCCCCChhhh
Q 039678 711 SVTEDILTGFKLHSRGWRSIYCMPKRSAF----KGSAPINLSDRLNQALRWALGSVEIFFSRHNPICYGCKEGKIKFLER 786 (1015)
Q Consensus 711 svTED~~tg~rL~~~GwrsvY~~~~~~af----~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~Pl~~g~~~~~L~l~QR 786 (1015)
.+.||+..|+....||-++-++. -..+= .|....+.- -..-+.|+=|-.+||. .|-. +.++.+..-
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~E-YiQvGKGRDvGlnqI~~F-----eaKia~G~GEQ~LSRd---~YrL-G~~ldffRm 1242 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHHE-YIQVGKGRDVGLNQISNF-----EAKIANGNGEQTLSRD---YYRL-GTQLDFFRM 1242 (1679)
T ss_pred ccchHhhhhhhHHhhCCCcccce-eeecccccccCcchhhhh-----hhhhcCCCcchhhhHH---HHHh-cccccHHHH
Confidence 89999999999999998887773 11110 233322221 2356889988888874 2212 456888777
Q ss_pred HH-hhhhhhhhhhhHH
Q 039678 787 FA-YINTTIYPFTSIP 801 (1015)
Q Consensus 787 L~-Yl~~~ly~l~sl~ 801 (1015)
|+ |+.+.-+++.++.
T Consensus 1243 LSfyftt~GF~~n~m~ 1258 (1679)
T KOG0916|consen 1243 LSFYFTTVGFYFNNMF 1258 (1679)
T ss_pred HHHHhccccHHHHhHH
Confidence 76 4444445665554
No 96
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=66.21 E-value=3.1 Score=47.00 Aligned_cols=44 Identities=34% Similarity=0.911 Sum_probs=36.4
Q ss_pred cCCCCeeeccCCCCCcc--------ch--hhhHHHHhhCCCCCCCCcccccccc
Q 039678 47 MANGDLFLACEECGFPV--------CR--PCYEYERREGTQLCPQCKTRYKRIK 90 (1015)
Q Consensus 47 ~~~g~~f~ac~ec~fpv--------Cr--~Cyeyer~eG~~~Cp~Ckt~ykr~k 90 (1015)
..+|...--|..|+||| |+ .|||-+|.|-.+.||.|..+-.|..
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHH
Confidence 34566677799999998 54 6999899999999999999998874
No 97
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=65.86 E-value=18 Score=39.13 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=38.6
Q ss_pred CCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhh-cCCCCCcceEEE
Q 039678 487 NKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFL-MDPQTGKRVCYV 543 (1015)
Q Consensus 487 h~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff-~Dp~~g~~va~V 543 (1015)
..-|-+.|++++. +.++|++.+.=|..+.+++++.+++-.| .|| ++|.|
T Consensus 40 ~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 40 KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 3478899999986 7999999999999999999999999998 898 55554
No 98
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=65.28 E-value=4.8 Score=45.33 Aligned_cols=53 Identities=26% Similarity=0.589 Sum_probs=43.3
Q ss_pred ccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
+.|.+|--++-++.+ ++.--|+|+.+.|-.|..---.-|...||.|.+.-+..
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 368899888888755 66666799999999999665668889999999988654
No 99
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=64.47 E-value=1.2e+02 Score=35.41 Aligned_cols=20 Identities=25% Similarity=0.606 Sum_probs=16.0
Q ss_pred HHhcCcccchhcccchhhhh
Q 039678 846 LRWSGVTIEEWWRNEQFWVI 865 (1015)
Q Consensus 846 ~rw~g~si~~wWrneqfW~I 865 (1015)
++-.|-+|+.||..+.|+.+
T Consensus 172 L~~NGS~Ik~WW~~HHy~s~ 191 (330)
T PF07851_consen 172 LIVNGSRIKGWWVFHHYIST 191 (330)
T ss_pred hccCCCcchHHHHHHHHHHH
Confidence 45668889999999988854
No 100
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.09 E-value=25 Score=41.42 Aligned_cols=48 Identities=17% Similarity=0.066 Sum_probs=37.1
Q ss_pred CCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCC
Q 039678 299 EPNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGA 349 (1015)
Q Consensus 299 ~~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~ 349 (1015)
.+.+||++.|+|.-.| |--...++||-|++.-.=|.=--.|.+.||=+
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDfS 197 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFS 197 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccCC
Confidence 4678999999999999 99999999999998754332223467777743
No 101
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=61.90 E-value=1.8 Score=38.42 Aligned_cols=25 Identities=32% Similarity=0.588 Sum_probs=21.5
Q ss_pred hhhhHHHHhhCCCCCCCCccccccc
Q 039678 65 RPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 65 r~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
+-|+|++..||.=.||.|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 5678889999999999999999644
No 102
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=61.59 E-value=6.1 Score=44.82 Aligned_cols=40 Identities=33% Similarity=0.796 Sum_probs=30.4
Q ss_pred CCCCCCccccc--cCccccccCCCCeeeccCC-CCCccchhhhH
Q 039678 29 WKSLDGQVCEI--CGDEIGKMANGDLFLACEE-CGFPVCRPCYE 69 (1015)
Q Consensus 29 ~~~~~~~~c~~--c~~~vg~~~~g~~f~ac~e-c~fpvCr~Cye 69 (1015)
+.+.+|-.|.- ||...-...| +--|.|.. |+|--||.|.|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHh
Confidence 45667889986 9987655442 23488877 99999999998
No 103
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=61.04 E-value=8.6 Score=28.38 Aligned_cols=39 Identities=36% Similarity=0.876 Sum_probs=27.0
Q ss_pred ccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCC
Q 039678 37 CEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQC 82 (1015)
Q Consensus 37 c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~C 82 (1015)
|.||.+. . ....+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~----~-~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE----L-KDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC----C-CCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 6788777 1 12211 25788899999976666677889987
No 104
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=59.77 E-value=7.9 Score=40.27 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=35.0
Q ss_pred CCccccccCccccccCCCCeeeccCCCCC---ccchhhhHHHHh-hCCCCCCCCccccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGF---PVCRPCYEYERR-EGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~f---pvCr~Cyeyer~-eG~~~Cp~Ckt~ykr~ 89 (1015)
.+..|.||-++ +++..-|| .|.= -|=+.|.+-=.. .++..|++|+++|.-.
T Consensus 7 ~~~~CRIC~~~-----~~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDE-----YDVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCC-----CCCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45699999766 23345688 6633 345678865544 5679999999999643
No 105
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=58.71 E-value=1.7 Score=42.59 Aligned_cols=48 Identities=31% Similarity=0.822 Sum_probs=35.0
Q ss_pred CCccccccCccccccC-CCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCc
Q 039678 33 DGQVCEICGDEIGKMA-NGDLFLACEECGFPVCRPCYEYERREGTQLCPQCK 83 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~-~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ck 83 (1015)
+...|..|+...|+-. .| ..|..|...||+.|-.|-.+++.=.|-=|-
T Consensus 53 ~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~ 101 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVCQ 101 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHHH
T ss_pred CCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhhH
Confidence 5669999999987764 35 789999999999999884455555665553
No 106
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=57.15 E-value=5.7 Score=33.76 Aligned_cols=28 Identities=32% Similarity=0.988 Sum_probs=18.5
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhH
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYE 69 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cye 69 (1015)
.|.|||+++|+..+ +.= +=+| ||.+|++
T Consensus 1 ~C~iCg~kigl~~~----~k~-~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR----FKI-KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc----eec-cCcc-chHHHHH
Confidence 59999999999653 111 1133 7888884
No 107
>PRK00420 hypothetical protein; Validated
Probab=55.54 E-value=5.1 Score=39.46 Aligned_cols=29 Identities=28% Similarity=0.716 Sum_probs=22.6
Q ss_pred eccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 54 LACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 54 ~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
-.|..|++|.=| -++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf~------lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLFE------LKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCccee------cCCCceECCCCCCeeee
Confidence 458888888632 37899999999999864
No 108
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=54.84 E-value=12 Score=29.41 Aligned_cols=39 Identities=33% Similarity=0.853 Sum_probs=27.5
Q ss_pred ccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCC
Q 039678 37 CEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQC 82 (1015)
Q Consensus 37 c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~C 82 (1015)
|.||-+.... +++.- .||--.|+.|.+.-.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 6788665322 44433 78999999999777666 7999987
No 109
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=54.06 E-value=11 Score=29.62 Aligned_cols=40 Identities=30% Similarity=0.737 Sum_probs=29.8
Q ss_pred ccccCccccccCCCCeeeccCCCCCccchhhhHHHHh-hCCCCCCCC
Q 039678 37 CEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERR-EGTQLCPQC 82 (1015)
Q Consensus 37 c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~-eG~~~Cp~C 82 (1015)
|.||.+...... --.+|+=..|+.|..--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778887644322 2346799999999987766 788889988
No 110
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.75 E-value=16 Score=45.26 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=40.7
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCc
Q 039678 300 PNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASL 351 (1015)
Q Consensus 300 ~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 351 (1015)
.+.||++-|+|+-+| |...+...||-|+...-=|.=--.+.|.||++..
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 356999999999999 9999999999998887655445578899998754
No 111
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=53.73 E-value=12 Score=30.87 Aligned_cols=46 Identities=26% Similarity=0.668 Sum_probs=32.4
Q ss_pred ccccccCccccccCCCCeeeccCCCCCc-cchhhhHHHHhhCCCCCCCCcccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFP-VCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fp-vCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
..|.||.+..-. -.+.+ |+=- +|..|++--.+ ....||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~p---CgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLLP---CGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEET---TCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEeC---CCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999987321 23454 5777 99999966665 77999999998854
No 112
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=52.91 E-value=9.9 Score=33.45 Aligned_cols=33 Identities=36% Similarity=0.839 Sum_probs=24.8
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchh
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRP 66 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~ 66 (1015)
.+|.|..||.....+.++..| -|..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~-~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVF-TCPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceE-EcCCCCCEECcH
Confidence 688999999998775555544 487898876655
No 113
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=52.24 E-value=13 Score=30.29 Aligned_cols=38 Identities=26% Similarity=0.825 Sum_probs=28.3
Q ss_pred CCccccccCccccccCCCCeeeccCCC-CCccchhhhHHHHhhC
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEEC-GFPVCRPCYEYERREG 75 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec-~fpvCr~Cyeyer~eG 75 (1015)
....|..|+..+ .|.-+ .|.+| .|-+|..||..-+..+
T Consensus 3 ~~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 3 HSYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CCcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 345799999853 36666 79999 9999999997544333
No 114
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=51.04 E-value=20 Score=31.57 Aligned_cols=50 Identities=26% Similarity=0.618 Sum_probs=36.8
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCC-CCCCCCcc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGT-QLCPQCKT 84 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~-~~Cp~Ckt 84 (1015)
....|..||-.|.-.+.+ .-.+|.+|+=-+-+-|. .-||-++ -.||.|+-
T Consensus 6 ~~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred cCccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 345899999998665555 44569999987455576 6678777 68999973
No 115
>PHA02926 zinc finger-like protein; Provisional
Probab=50.59 E-value=17 Score=39.88 Aligned_cols=61 Identities=26% Similarity=0.567 Sum_probs=42.3
Q ss_pred CCCccccccCccccccC--CCCeeeccCCCCCccchhhhHHHHhh-----CCCCCCCCccccccccCC
Q 039678 32 LDGQVCEICGDEIGKMA--NGDLFLACEECGFPVCRPCYEYERRE-----GTQLCPQCKTRYKRIKGS 92 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~--~g~~f~ac~ec~fpvCr~Cyeyer~e-----G~~~Cp~Ckt~ykr~kgs 92 (1015)
.....|.||=+.|-... +..-|--=..|+-.-|..|..--++. +...||.|+++++...=|
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 44579999999975432 22223333468889999999766653 246799999999866433
No 116
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=49.58 E-value=57 Score=29.94 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhh
Q 039678 321 LVTANTILSVLAMDYPVDKISCYISDDGASLLSFE 355 (1015)
Q Consensus 321 ~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~ 355 (1015)
..+...|..-+++.+- ++||.|||+++-|.+
T Consensus 5 ~~L~~wl~~~~~lG~d----~i~i~d~~s~D~t~~ 35 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVD----HIYIYDDGSTDGTRE 35 (97)
T ss_pred HHHHHHHHHHHHcCCC----EEEEEECCCCccHHH
Confidence 4566666666777653 589999999885543
No 117
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=49.49 E-value=5.9 Score=44.94 Aligned_cols=36 Identities=28% Similarity=0.824 Sum_probs=26.9
Q ss_pred cccccCccccccCCCCeeeccCCC-CCccchhhhHHHHhhC
Q 039678 36 VCEICGDEIGKMANGDLFLACEEC-GFPVCRPCYEYERREG 75 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec-~fpvCr~Cyeyer~eG 75 (1015)
-|.+|--++- .-.|+.|+|| +|-.|-||+.--...|
T Consensus 7 hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDMT----DLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhhh----cceeeeeecccccceehhhhhcccccc
Confidence 5888876543 4479999999 9999999995443333
No 118
>PRK12495 hypothetical protein; Provisional
Probab=49.06 E-value=8.7 Score=41.83 Aligned_cols=29 Identities=34% Similarity=0.977 Sum_probs=22.2
Q ss_pred eeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 53 FLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 53 f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 42 a~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 42 NAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 345777777774 34899999999999964
No 119
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.58 E-value=11 Score=48.81 Aligned_cols=45 Identities=27% Similarity=0.674 Sum_probs=32.6
Q ss_pred CCCccccccCccccccCCCCeeeccCCCCC-----ccchhhhHHHHhhC-CCCCCCCccccc
Q 039678 32 LDGQVCEICGDEIGKMANGDLFLACEECGF-----PVCRPCYEYERREG-TQLCPQCKTRYK 87 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~~f~ac~ec~f-----pvCr~Cyeyer~eG-~~~Cp~Ckt~yk 87 (1015)
.....|.-||... ....|.+|+= ..|..| ++.+ ...||.|+..-+
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4556999999883 4468999984 368888 3433 367999998654
No 120
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=46.84 E-value=12 Score=30.71 Aligned_cols=27 Identities=30% Similarity=0.752 Sum_probs=16.7
Q ss_pred cccccCccccccCCCCeeeccCCCCCcc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPV 63 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpv 63 (1015)
.|+-||..+..+++.. -+-|..|+.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 5777777776665544 34566666554
No 121
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=45.86 E-value=1.1e+02 Score=32.89 Aligned_cols=61 Identities=13% Similarity=0.221 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccch--hhHHHHHHHHHHHHHHHHHHHHhhcCC-CCcchh
Q 039678 917 PTTVLIINLVGIVAGITDAINTGYEAMR--PLIGKLFFVFWVISHLYPFLKGLMGRQ-NRTPTI 977 (1015)
Q Consensus 917 ~~~LlllnLiaiv~Gi~~~i~~~~~~w~--~l~g~lf~~~Wvi~~l~Pfl~gL~gR~-~r~P~~ 977 (1015)
=..|+++.+++++-|+.-.++...+..| .++...+..+++++.+|=|+--+.|-+ .|.++.
T Consensus 99 DssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~ 162 (226)
T COG4858 99 DSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTW 162 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchH
Confidence 4457788888899999888865543333 245556778888888888887777633 466664
No 122
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.29 E-value=9.4 Score=42.66 Aligned_cols=55 Identities=33% Similarity=0.667 Sum_probs=35.6
Q ss_pred CCCCCCCCCccccccCccccccCC--CCe----eeccCCCCCccchhhhHHHHh-----hCCCCCCCCccccc
Q 039678 26 PKPWKSLDGQVCEICGDEIGKMAN--GDL----FLACEECGFPVCRPCYEYERR-----EGTQLCPQCKTRYK 87 (1015)
Q Consensus 26 ~~~~~~~~~~~c~~c~~~vg~~~~--g~~----f~ac~ec~fpvCr~Cyeyer~-----eG~~~Cp~Ckt~yk 87 (1015)
.-|-|+++.++|.+||..+-+++| |-. -.-||.- =-|+..| ---|-||=||++-+
T Consensus 216 glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-------FHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 216 GLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-------FHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccc-------hHHHhhhhheeecCCCCCchHHHHhh
Confidence 456788999999999999766664 432 2334321 1233334 23499999999863
No 124
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=44.78 E-value=16 Score=43.56 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=21.8
Q ss_pred eeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 52 LFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 52 ~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
..++|++|+.-+ ..+...||+|++.-.|.
T Consensus 220 ~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 220 GLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred CCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 467899999864 23446899999988655
No 125
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.18 E-value=4 Score=47.00 Aligned_cols=45 Identities=29% Similarity=0.691 Sum_probs=37.7
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
+|.||-+=+-.+-. =.||+-.+|+.|.--.-++||.-||-|++.-
T Consensus 45 ~c~icl~llk~tmt------tkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTMT------TKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhcc------cHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 89999887655422 2489999999999999999999999999876
No 126
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=43.09 E-value=8.6 Score=37.72 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=17.6
Q ss_pred eccCCCCCccchhhhHHHHhhCCCCCCCCcccc
Q 039678 54 LACEECGFPVCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 54 ~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
.-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 71 AWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 4577776 4556555556799999763
No 127
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=41.86 E-value=27 Score=40.12 Aligned_cols=43 Identities=23% Similarity=0.611 Sum_probs=27.7
Q ss_pred CCccccccCcc--cc--c---cCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcc
Q 039678 33 DGQVCEICGDE--IG--K---MANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKT 84 (1015)
Q Consensus 33 ~~~~c~~c~~~--vg--~---~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt 84 (1015)
+.+.|.+||.. ++ . .++|.-+.-|.-|+. |.+-.+-.||.|+.
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEE 232 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCC
Confidence 34599999998 11 1 258888999987754 22333455666655
No 128
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=41.46 E-value=11 Score=43.86 Aligned_cols=69 Identities=29% Similarity=0.565 Sum_probs=44.5
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhh-hHHHHhhCCCCCCCCcccc---cc--ccCCCCcCCCCCcccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPC-YEYERREGTQLCPQCKTRY---KR--IKGSPRVEGDADEEDI 104 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~C-yeyer~eG~~~Cp~Ckt~y---kr--~kgsp~v~gd~~e~~~ 104 (1015)
-+-.|.-||+.+|+...--.-.+|.. -.=--| |||--++|.+.||-|+.-- +| .-|||-|+.+-++-++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~v 438 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRCV 438 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccccccccc
Confidence 45589999999999755444566621 111122 5666789999999998322 32 2367888777655444
No 129
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=41.27 E-value=17 Score=32.00 Aligned_cols=30 Identities=30% Similarity=0.683 Sum_probs=24.3
Q ss_pred CCccccccCcc---ccccCCCCeeeccCCCCCc
Q 039678 33 DGQVCEICGDE---IGKMANGDLFLACEECGFP 62 (1015)
Q Consensus 33 ~~~~c~~c~~~---vg~~~~g~~f~ac~ec~fp 62 (1015)
.|-+|.-|+.- ++..+||...+-|-+|+|.
T Consensus 8 AGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 8 AGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred ccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 46689998854 5666899999999999985
No 130
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=41.05 E-value=13 Score=31.51 Aligned_cols=28 Identities=25% Similarity=0.543 Sum_probs=19.7
Q ss_pred ccccccCccccccCCCCeeeccCCCCCcc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPV 63 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpv 63 (1015)
-.|..||.+|.++.. ..-+.|..|++.|
T Consensus 7 Y~C~~Cg~~~~~~~~-~~~irCp~Cg~rI 34 (49)
T COG1996 7 YKCARCGREVELDQE-TRGIRCPYCGSRI 34 (49)
T ss_pred EEhhhcCCeeehhhc-cCceeCCCCCcEE
Confidence 378999999854432 2347888888875
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.95 E-value=11 Score=43.22 Aligned_cols=29 Identities=31% Similarity=0.970 Sum_probs=24.1
Q ss_pred CCccchhhhHHHHhhCC--CCCCCCcccccc
Q 039678 60 GFPVCRPCYEYERREGT--QLCPQCKTRYKR 88 (1015)
Q Consensus 60 ~fpvCr~Cyeyer~eG~--~~Cp~Ckt~ykr 88 (1015)
+|.|||.|+---+-+-+ +-||-|.++||.
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e 31 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKE 31 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccch
Confidence 57899999966666556 899999999974
No 132
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.86 E-value=16 Score=41.02 Aligned_cols=22 Identities=45% Similarity=1.055 Sum_probs=17.6
Q ss_pred CCCCccccccCccccccCCCCeeeccCCCC
Q 039678 31 SLDGQVCEICGDEIGKMANGDLFLACEECG 60 (1015)
Q Consensus 31 ~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~ 60 (1015)
..++..|..||+- -|++|..|+
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 5667899999854 789998884
No 133
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=40.71 E-value=17 Score=43.21 Aligned_cols=30 Identities=20% Similarity=0.515 Sum_probs=21.4
Q ss_pred eeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 52 LFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 52 ~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
..++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999866 1 23346899999987544
No 134
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.44 E-value=28 Score=30.42 Aligned_cols=47 Identities=28% Similarity=0.721 Sum_probs=34.1
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
.|+.|+.++--+. .+-++-=.||-| |.+|-|... .++||.|+-.+-+
T Consensus 7 nCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999965543 244555578887 999996554 4799999876643
No 135
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=40.02 E-value=6 Score=38.69 Aligned_cols=29 Identities=31% Similarity=0.724 Sum_probs=16.0
Q ss_pred eccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 54 LACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 54 ~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
+-|+.|+.. ++..+..-.||+|+.+..+.
T Consensus 71 ~~C~~Cg~~-------~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 71 ARCRDCGHE-------FEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEETTTS-E-------EECHHCCHH-SSSSSS-EEE
T ss_pred EECCCCCCE-------EecCCCCCCCcCCcCCCcEE
Confidence 457666643 33344445599999987554
No 136
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=39.89 E-value=78 Score=37.07 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=30.0
Q ss_pred CCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHH
Q 039678 485 PHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMC 529 (1015)
Q Consensus 485 ~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amc 529 (1015)
-.++|+-.|=-++-... ..+.+||-.+|||.|+ |.++.|=+-
T Consensus 140 VR~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyi--PGaV~EYvk 181 (381)
T TIGR02460 140 VRSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYF--PGAVNEYVK 181 (381)
T ss_pred eecCcchHHHHHHHHHH-HhCCceEeEeecccCC--CchHHHHHH
Confidence 34669988875443322 3588999999999998 567777543
No 137
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=39.43 E-value=28 Score=30.79 Aligned_cols=48 Identities=33% Similarity=0.680 Sum_probs=34.8
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCC-CCCCCCc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGT-QLCPQCK 83 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~-~~Cp~Ck 83 (1015)
..+|..||..|-..+++-.| +|..|+=-+-.-|- --||-|+ -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 45899999999887777655 69999944433343 3467777 6899886
No 138
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=39.39 E-value=70 Score=37.61 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHH
Q 039678 485 PHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMC 529 (1015)
Q Consensus 485 ~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amc 529 (1015)
=.++|+-.|=-++-... +.+.+||-.+|||.|+ |.++.|=+-
T Consensus 141 VR~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyi--PGaV~EYvk 182 (393)
T PRK14503 141 VRSGKGEGMIIGLLLAK-ALGARYVGFVDADNYI--PGAVNEYVK 182 (393)
T ss_pred eecCcchHHHHHHHHHH-HhCCCeEeEeecccCC--CchHHHHHH
Confidence 34669988875443322 3588999999999998 567877543
No 139
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=39.29 E-value=21 Score=29.81 Aligned_cols=30 Identities=33% Similarity=1.093 Sum_probs=25.1
Q ss_pred cccccCccccccCCCCeeeccCCC-CCccchhhhH
Q 039678 36 VCEICGDEIGKMANGDLFLACEEC-GFPVCRPCYE 69 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec-~fpvCr~Cye 69 (1015)
.|..|+.++. +...+.|.+| .|-+|-+||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5888987643 4488999999 9999999995
No 140
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=38.60 E-value=17 Score=27.20 Aligned_cols=28 Identities=39% Similarity=1.083 Sum_probs=11.9
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhh
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPC 67 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~C 67 (1015)
.|.+|+.++. |+.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998854 357888999999998877
No 141
>PRK07220 DNA topoisomerase I; Validated
Probab=38.38 E-value=16 Score=46.50 Aligned_cols=48 Identities=23% Similarity=0.642 Sum_probs=31.9
Q ss_pred ccccccCcccccc--CCCCeeeccCCCCCccchhhhHHHHh----hCCCCCCCCcc
Q 039678 35 QVCEICGDEIGKM--ANGDLFLACEECGFPVCRPCYEYERR----EGTQLCPQCKT 84 (1015)
Q Consensus 35 ~~c~~c~~~vg~~--~~g~~f~ac~ec~fpvCr~Cyeyer~----eG~~~Cp~Ckt 84 (1015)
..|..||.++... ..|..|..|. +||-|+--+-...+ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875432 3466799995 57888755533321 12478999985
No 142
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=37.83 E-value=12 Score=36.93 Aligned_cols=29 Identities=21% Similarity=0.651 Sum_probs=16.7
Q ss_pred eccCCCCCccchhhhHHHHhhCC-CCCCCCccccccc
Q 039678 54 LACEECGFPVCRPCYEYERREGT-QLCPQCKTRYKRI 89 (1015)
Q Consensus 54 ~ac~ec~fpvCr~Cyeyer~eG~-~~Cp~Ckt~ykr~ 89 (1015)
.-|+.|+ ++++..+-. ..||+|+.+-.+.
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~i 101 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVII 101 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceEE
Confidence 4466666 334443322 3599999875444
No 143
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=37.54 E-value=14 Score=43.74 Aligned_cols=57 Identities=25% Similarity=0.644 Sum_probs=39.8
Q ss_pred ccccccCccccccCCCCeeeccCCCC-CccchhhhHHHHhhCCCCCCCCccccccccC--CCCcCCC
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECG-FPVCRPCYEYERREGTQLCPQCKTRYKRIKG--SPRVEGD 98 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~-fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kg--sp~v~gd 98 (1015)
-.|-.|..+| +|-.+|-|.||. |-+|-+|+.--..-|.+ ||.-+|.-.+. .|.+.+|
T Consensus 15 y~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~~s~~i~~~~ 74 (438)
T KOG0457|consen 15 YNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDTNSFPILDPS 74 (438)
T ss_pred CCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecCCCCCCCCCC
Confidence 4799999875 466899999998 99999999443333333 45567775543 4555555
No 144
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.30 E-value=14 Score=35.40 Aligned_cols=44 Identities=36% Similarity=0.662 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccccccCC-------CCCCCCCCCCCcchhheeccCCCC
Q 039678 408 KREYEEFKVRMNALVAKSRMIPQDGWIMQDG-------TPWPGNNTQDHPGMIQVFLGREGG 462 (1015)
Q Consensus 408 kr~Yee~k~ri~~l~~~~~~vp~~~w~m~dg-------t~w~~~~~~dHp~iiqv~~~~~g~ 462 (1015)
|.||+|+|.. --++|.|+|- +.|.-.+--.||.+.+-|--.+||
T Consensus 20 k~eyqel~~~-----------~~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~iengG 70 (107)
T COG4707 20 KVEYQELKEK-----------DFDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENGG 70 (107)
T ss_pred HHHHHHHHHh-----------hhcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecCc
Confidence 5699998753 1268999876 346655567899998888666663
No 145
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=37.05 E-value=25 Score=28.91 Aligned_cols=31 Identities=32% Similarity=0.802 Sum_probs=24.7
Q ss_pred cccccCccccccCCCCeeeccCCCC-CccchhhhHHH
Q 039678 36 VCEICGDEIGKMANGDLFLACEECG-FPVCRPCYEYE 71 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~-fpvCr~Cyeye 71 (1015)
.|..|+..|. | ....|.+|. |-+|.+||...
T Consensus 2 ~C~~C~~~i~----g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPIV----G-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCCc----C-CEEECCCCCCCcCHHHHHCcC
Confidence 5889998532 5 788999997 99999999633
No 146
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=35.85 E-value=35 Score=27.61 Aligned_cols=43 Identities=26% Similarity=0.684 Sum_probs=31.3
Q ss_pred ccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcc
Q 039678 37 CEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKT 84 (1015)
Q Consensus 37 c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt 84 (1015)
|.+|-.+. +++..+++. .|+=-+|..|.+-.- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l~--~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRLT--SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEEc--ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88899887 333333332 679999999995554 66789999985
No 147
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=35.76 E-value=25 Score=35.35 Aligned_cols=50 Identities=34% Similarity=0.798 Sum_probs=36.1
Q ss_pred CCCCccccccCcccccc--CCCCeeeccCCCCCccchhhhHH---HHhhCCCCCCCCcc
Q 039678 31 SLDGQVCEICGDEIGKM--ANGDLFLACEECGFPVCRPCYEY---ERREGTQLCPQCKT 84 (1015)
Q Consensus 31 ~~~~~~c~~c~~~vg~~--~~g~~f~ac~ec~fpvCr~Cyey---er~eG~~~Cp~Ckt 84 (1015)
...++.|..||....+- ..| -|+.|. .||.|+- |+. ...+....||+|+.
T Consensus 14 ~~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 14 LKTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred cccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 34678999999994443 468 999994 6999986 221 22255689999996
No 148
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.71 E-value=15 Score=28.32 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=12.4
Q ss_pred HHHHhhCCCCCCCCccccc
Q 039678 69 EYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 69 eyer~eG~~~Cp~Ckt~yk 87 (1015)
.|+-++....||.|+.+-+
T Consensus 10 ~y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 10 IYDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred EECCCcCCCcCcCCCCcHH
Confidence 3444446689999987654
No 149
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=33.71 E-value=15 Score=36.11 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=17.1
Q ss_pred eccCCCCCccchhhhHHHHhhCC-CCCCCCccccccc
Q 039678 54 LACEECGFPVCRPCYEYERREGT-QLCPQCKTRYKRI 89 (1015)
Q Consensus 54 ~ac~ec~fpvCr~Cyeyer~eG~-~~Cp~Ckt~ykr~ 89 (1015)
.-|+.|+ ++++..+-. -.||+|+.+-.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~i 100 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDMLRI 100 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCcEE
Confidence 4476666 244444333 5699999764433
No 150
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.47 E-value=13 Score=32.56 Aligned_cols=13 Identities=38% Similarity=1.055 Sum_probs=8.3
Q ss_pred CCCCCCCcccccc
Q 039678 76 TQLCPQCKTRYKR 88 (1015)
Q Consensus 76 ~~~Cp~Ckt~ykr 88 (1015)
.-+||+||+-|..
T Consensus 44 ~PVCP~Ck~iye~ 56 (58)
T PF11238_consen 44 FPVCPECKEIYES 56 (58)
T ss_pred CCCCcCHHHHHHh
Confidence 3566777777754
No 151
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=33.41 E-value=17 Score=35.76 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=17.8
Q ss_pred eccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 54 LACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 54 ~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
.-|+.|+ ++++..+-...||+|+.+-.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~i 99 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQV 99 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcEE
Confidence 4466665 3344444456799999875444
No 152
>COG1813 Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription]
Probab=33.28 E-value=28 Score=36.52 Aligned_cols=34 Identities=32% Similarity=0.696 Sum_probs=20.3
Q ss_pred ccccCccccccCCCCeeeccCCCCCccchhhhHHHHhh
Q 039678 37 CEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERRE 74 (1015)
Q Consensus 37 c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~e 74 (1015)
|.|||..|-.. - -|.=.-=-.-||++||.|.++.
T Consensus 6 CEiCG~~i~~~---~-~v~vegsel~VC~~Cak~G~~~ 39 (165)
T COG1813 6 CELCGREIDKP---I-KVKVEGAELTVCDDCAKFGTAA 39 (165)
T ss_pred eeccccccCCC---e-eEEeecceeehhHHHHHhccCc
Confidence 99999986521 1 1111122356789999888443
No 153
>PRK11827 hypothetical protein; Provisional
Probab=33.27 E-value=28 Score=30.77 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=17.6
Q ss_pred ccchhhhHHHHhhCCCCCCCCccccccccCCC
Q 039678 62 PVCRPCYEYERREGTQLCPQCKTRYKRIKGSP 93 (1015)
Q Consensus 62 pvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kgsp 93 (1015)
|+|+-=.+|...+..-+|..|+-.|--..|=|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIP 43 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIP 43 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcc
Confidence 44444334433333467888888886554444
No 154
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=32.31 E-value=16 Score=38.32 Aligned_cols=34 Identities=38% Similarity=0.869 Sum_probs=22.0
Q ss_pred ccccccCccccc----cCCCCe-eeccCCCCCccchhhh
Q 039678 35 QVCEICGDEIGK----MANGDL-FLACEECGFPVCRPCY 68 (1015)
Q Consensus 35 ~~c~~c~~~vg~----~~~g~~-f~ac~ec~fpvCr~Cy 68 (1015)
.+|..||.+--. ..+|+. .+.-+|--.|+||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988332 244543 5556788899999998
No 155
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.20 E-value=33 Score=40.76 Aligned_cols=53 Identities=25% Similarity=0.526 Sum_probs=36.9
Q ss_pred CCCCCCCC-ccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 27 KPWKSLDG-QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 27 ~~~~~~~~-~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
+.+..+.. ..|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 34555444 48999987642 2333 368999999999765443 468999999874
No 156
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=32.11 E-value=37 Score=24.87 Aligned_cols=24 Identities=38% Similarity=0.963 Sum_probs=14.1
Q ss_pred ccccCccccccCCCCeeeccCCCCC
Q 039678 37 CEICGDEIGKMANGDLFLACEECGF 61 (1015)
Q Consensus 37 c~~c~~~vg~~~~g~~f~ac~ec~f 61 (1015)
|..||-.|--.+.|..| .|.+|||
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 56677665544444444 4777775
No 157
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=31.70 E-value=68 Score=37.67 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=31.9
Q ss_pred CCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHH-----HhhcCCCCCcceEEEecCcc
Q 039678 487 NKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAM-----CFLMDPQTGKRVCYVQFPQR 548 (1015)
Q Consensus 487 h~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~am-----cff~Dp~~g~~va~VQ~PQ~ 548 (1015)
++|+-.|=-++-... +...+||-.+|||.|+ |.++.|=. +|.|-+. .-++|-.-++
T Consensus 142 ~GKgEGMiiGillAk-~~g~~YVGFvDADNyi--PGaV~EYvk~yAAGf~ms~s---pytMVRi~W~ 202 (381)
T PF09488_consen 142 NGKGEGMIIGILLAK-APGKRYVGFVDADNYI--PGAVNEYVKDYAAGFAMSES---PYTMVRIHWR 202 (381)
T ss_dssp SSHHHHHHHHHHHHH-HTT-SEEEE--TTBS---HHHHHHHHHHHHHHHHC-SS---SCEEEEEE--
T ss_pred cCchHHHHHHHHHHH-hcCCceEeEeeccCCC--cchHHHHHHHHHhhhcccCC---CceEEEEEec
Confidence 569999886444322 3688999999999996 77887744 4555421 3455544333
No 158
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=31.44 E-value=27 Score=30.61 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=14.0
Q ss_pred hhCCCCCCCCccccc------cccCCCCcCCCCCccccc
Q 039678 73 REGTQLCPQCKTRYK------RIKGSPRVEGDADEEDID 105 (1015)
Q Consensus 73 ~eG~~~Cp~Ckt~yk------r~kgsp~v~gd~~e~~~~ 105 (1015)
.++|..-|=|-+|=| -..|+-||+|.+++++.+
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 355566666666655 345677888876544443
No 159
>PRK11595 DNA utilization protein GntX; Provisional
Probab=31.34 E-value=29 Score=37.69 Aligned_cols=39 Identities=23% Similarity=0.557 Sum_probs=25.7
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTR 85 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ 85 (1015)
.+.|..||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 357999998874321 23788887654332 3589999865
No 160
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.01 E-value=43 Score=30.72 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=31.9
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
-|.-|+.++--+.+.-.+ -=-||-| |.+|-|... .+.||.|+-..-+.
T Consensus 7 nCECCDrDLpp~s~dA~I-CtfEcTF--CadCae~~l---~g~CPnCGGelv~R 54 (84)
T COG3813 7 NCECCDRDLPPDSTDARI-CTFECTF--CADCAENRL---HGLCPNCGGELVAR 54 (84)
T ss_pred CCcccCCCCCCCCCceeE-EEEeeeh--hHhHHHHhh---cCcCCCCCchhhcC
Confidence 588899886554433322 2237776 999986543 26899999777543
No 161
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=30.97 E-value=5.6e+02 Score=29.22 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=37.9
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEE-EEecCCC-CchhhhhhhhH
Q 039678 300 PNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISC-YISDDGA-SLLSFESLSET 360 (1015)
Q Consensus 300 ~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~-yvsDDG~-s~~T~~al~Ea 360 (1015)
..+-++|=|+.|-.| +++ ..-.=.-.++.++||.+++++ .+..|.. -..|.+.|.++
T Consensus 21 ~~~~e~VLILtplrn--a~~--~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~ 79 (269)
T PF03452_consen 21 ARNKESVLILTPLRN--AAS--FLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAA 79 (269)
T ss_pred cccCCeEEEEEecCC--chH--HHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHH
Confidence 345678888888887 454 466667778889999998777 3333322 25566666544
No 162
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=30.30 E-value=23 Score=36.35 Aligned_cols=43 Identities=37% Similarity=0.842 Sum_probs=26.0
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHH-HhhCCCCCCCCcc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYE-RREGTQLCPQCKT 84 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeye-r~eG~~~Cp~Ckt 84 (1015)
.+..|..||+ .-||+|.+|.= -|+--.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4567999984 47999988852 222222111 1133478999986
No 163
>PF15050 SCIMP: SCIMP protein
Probab=30.29 E-value=52 Score=32.93 Aligned_cols=40 Identities=20% Similarity=0.607 Sum_probs=25.6
Q ss_pred hhcccchhhhhhhHHHHHHHH-----HHHHHHHHcCCCCCceeCcC
Q 039678 855 EWWRNEQFWVIGGISSHLFAV-----FQGLAKILTKNDTIFTVTFK 895 (1015)
Q Consensus 855 ~wWrneqfW~I~~~sa~l~av-----~~allk~L~g~~~~F~VTpK 895 (1015)
+|||+ .||+|-++..-+..+ +-.+.+.+.+...++.++.-
T Consensus 2 ~WWr~-nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp 46 (133)
T PF15050_consen 2 SWWRD-NFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKP 46 (133)
T ss_pred chHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccc
Confidence 59997 599987765433332 22334555667788888764
No 164
>PRK07219 DNA topoisomerase I; Validated
Probab=29.59 E-value=30 Score=44.69 Aligned_cols=53 Identities=28% Similarity=0.681 Sum_probs=30.4
Q ss_pred CccccccCcccccc--CCCCeeeccCCCCCccchhhhHHHH----hhCCCCCCCCccccccc
Q 039678 34 GQVCEICGDEIGKM--ANGDLFLACEECGFPVCRPCYEYER----REGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~--~~g~~f~ac~ec~fpvCr~Cyeyer----~eG~~~Cp~Ckt~ykr~ 89 (1015)
...|..||..+... ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34677787664332 2454 88885 5676653332211 12347899998866543
No 165
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=29.52 E-value=44 Score=42.22 Aligned_cols=73 Identities=29% Similarity=0.635 Sum_probs=47.2
Q ss_pred ceEEEeccCC-CCC-CCCCCCCccccccCccccccCCCC---eeeccCCCC--------------------CccchhhhH
Q 039678 15 NELVLIHNHE-EPK-PWKSLDGQVCEICGDEIGKMANGD---LFLACEECG--------------------FPVCRPCYE 69 (1015)
Q Consensus 15 ~~~~~~~~~~-~~~-~~~~~~~~~c~~c~~~vg~~~~g~---~f~ac~ec~--------------------fpvCr~Cye 69 (1015)
.+|..+++++ +.+ ..-..+-.+|.-|-.++---.+=. +|..|-.|| ||.|-.|-+
T Consensus 80 ~~F~I~~S~~~~~~~~~I~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~ 159 (750)
T COG0068 80 TDFRIRKSEGKGNKNTQIPPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDK 159 (750)
T ss_pred CceEEEecCCCCCcccccCCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHH
Confidence 3455656633 122 222456679999998865433322 699999994 999999974
Q ss_pred -HH----Hh--hCCCCCCCCccccc
Q 039678 70 -YE----RR--EGTQLCPQCKTRYK 87 (1015)
Q Consensus 70 -ye----r~--eG~~~Cp~Ckt~yk 87 (1015)
|+ || ----+||.|+-.|.
T Consensus 160 EY~dP~nRRfHAQp~aCp~CGP~~~ 184 (750)
T COG0068 160 EYKDPLNRRFHAQPIACPKCGPHLF 184 (750)
T ss_pred HhcCccccccccccccCcccCCCeE
Confidence 33 33 22369999997654
No 166
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=29.38 E-value=50 Score=29.68 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=30.8
Q ss_pred ccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
-.|.||++ +|.+ +.++ .||.-.||.|-+--.++++..||.|+.+.
T Consensus 5 f~CpIt~~-lM~d----PVi~--~~G~tyer~~I~~~l~~~~~~~P~t~~~l 49 (73)
T PF04564_consen 5 FLCPITGE-LMRD----PVIL--PSGHTYERSAIERWLEQNGGTDPFTRQPL 49 (73)
T ss_dssp GB-TTTSS-B-SS----EEEE--TTSEEEEHHHHHHHHCTTSSB-TTT-SB-
T ss_pred cCCcCcCc-HhhC----ceeC--CcCCEEcHHHHHHHHHcCCCCCCCCCCcC
Confidence 36888875 5553 4444 35699999999999888889999998876
No 167
>PRK08359 transcription factor; Validated
Probab=29.36 E-value=21 Score=37.89 Aligned_cols=36 Identities=42% Similarity=0.836 Sum_probs=20.0
Q ss_pred CCccccccCccccccCCCCe-eeccCCCCCccchhhh-HHHH
Q 039678 33 DGQVCEICGDEIGKMANGDL-FLACEECGFPVCRPCY-EYER 72 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~-f~ac~ec~fpvCr~Cy-eyer 72 (1015)
....|.|||.+|- |.. -|-=.-=-.-||..|| .|-.
T Consensus 5 ~~~~CEiCG~~i~----g~~~~v~ieGael~VC~~Ca~k~G~ 42 (176)
T PRK08359 5 KPRYCEICGAEIR----GPGHRIRIEGAELLVCDRCYEKYGR 42 (176)
T ss_pred CcceeecCCCccC----CCCeEEEEcCeEEehHHHHHHHhCC
Confidence 3345999999973 221 1111111245778888 6644
No 168
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=29.05 E-value=28 Score=43.22 Aligned_cols=44 Identities=32% Similarity=0.566 Sum_probs=26.0
Q ss_pred CCCCccccccCccccccCCCCe-----------eec-----cCCCCCccchhhhHHHHhhC
Q 039678 31 SLDGQVCEICGDEIGKMANGDL-----------FLA-----CEECGFPVCRPCYEYERREG 75 (1015)
Q Consensus 31 ~~~~~~c~~c~~~vg~~~~g~~-----------f~a-----c~ec~fpvCr~Cyeyer~eG 75 (1015)
.....+|.+||.+-.+..+-.. |++ =.-=.||||..|+..- .+|
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l-~~G 254 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL-EEG 254 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH-HHH
Confidence 4456689999998433333221 222 0123789999999543 444
No 169
>PRK04296 thymidine kinase; Provisional
Probab=29.00 E-value=28 Score=36.67 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=24.1
Q ss_pred ccccccCccccc----c------CCCCe-eeccCCCCCccchhhhH
Q 039678 35 QVCEICGDEIGK----M------ANGDL-FLACEECGFPVCRPCYE 69 (1015)
Q Consensus 35 ~~c~~c~~~vg~----~------~~g~~-f~ac~ec~fpvCr~Cye 69 (1015)
.+|..||.+--. . .+|+. .+--.|=-.|+||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 489999987322 2 24444 45566777899999994
No 170
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=28.41 E-value=40 Score=27.67 Aligned_cols=44 Identities=23% Similarity=0.733 Sum_probs=30.8
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhHHHHh-----hCCCCCCCCc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERR-----EGTQLCPQCK 83 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~-----eG~~~Cp~Ck 83 (1015)
+|++||. ..+++..+.|..|.--.=..|.....+ ++.=.||.|+
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5899998 566778899999987666667655422 3356677665
No 171
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=28.36 E-value=3.1e+02 Score=29.38 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 039678 914 LIPPTTVLIINLVGIVAGITDAINT 938 (1015)
Q Consensus 914 ~iP~~~LlllnLiaiv~Gi~~~i~~ 938 (1015)
++.-..|+++.+++++.|+...+..
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667777888888888876644
No 172
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=28.29 E-value=25 Score=30.94 Aligned_cols=28 Identities=36% Similarity=0.878 Sum_probs=20.0
Q ss_pred CccccccCccccccCCCCeeeccCCCCCcc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPV 63 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpv 63 (1015)
--+|.-||.+-.+. .|| .+.|.||||.|
T Consensus 20 iYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEecccccccccc-CCC-cEehhhcchHH
Confidence 34899999885543 344 46799999976
No 173
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=28.08 E-value=41 Score=28.03 Aligned_cols=32 Identities=22% Similarity=0.643 Sum_probs=24.4
Q ss_pred cccccCccccccCCCCeeeccCCCC-CccchhhhHHHH
Q 039678 36 VCEICGDEIGKMANGDLFLACEECG-FPVCRPCYEYER 72 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~-fpvCr~Cyeyer 72 (1015)
.|.+||-++.. +..-|-.++ +-+|.+||+-.|
T Consensus 2 ~C~~Cg~D~t~-----vryh~~~~~~~dLC~~CF~~G~ 34 (45)
T cd02336 2 HCFTCGNDCTR-----VRYHNLKAKKYDLCPSCYQEGR 34 (45)
T ss_pred cccCCCCccCc-----eEEEecCCCccccChHHHhCcC
Confidence 69999999742 666677776 999999996544
No 174
>COG4818 Predicted membrane protein [Function unknown]
Probab=27.56 E-value=4.4e+02 Score=25.72 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCc
Q 039678 865 IGGISSHLFAVFQGLAKILTKNDTIF 890 (1015)
Q Consensus 865 I~~~sa~l~av~~allk~L~g~~~~F 890 (1015)
|.+.-.++++.+.+++-.|.-++.+|
T Consensus 5 iegaLCY~lgwitGllFlllEre~~F 30 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKF 30 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcc
Confidence 34555677788888887776666555
No 175
>PRK14973 DNA topoisomerase I; Provisional
Probab=27.53 E-value=39 Score=44.32 Aligned_cols=48 Identities=23% Similarity=0.666 Sum_probs=31.1
Q ss_pred ccccccCcccccc--CCCCeeeccCCCCCccchhhhHHHHh-hC-----CCCCCCCccc
Q 039678 35 QVCEICGDEIGKM--ANGDLFLACEECGFPVCRPCYEYERR-EG-----TQLCPQCKTR 85 (1015)
Q Consensus 35 ~~c~~c~~~vg~~--~~g~~f~ac~ec~fpvCr~Cyeyer~-eG-----~~~Cp~Ckt~ 85 (1015)
..|..||.++-.. ..|. |..|. +||-|+-.+..... .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 5799999875422 2344 99996 66888855543221 12 3689999973
No 176
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=27.49 E-value=45 Score=30.61 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=31.5
Q ss_pred hhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecC
Q 039678 655 RKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMP 734 (1015)
Q Consensus 655 ~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~ 734 (1015)
.-+|....+.++.+.++||+++. - .|| |- ||.+++.|+..+|.++.....
T Consensus 18 ~~~Gg~~~~~~~~f~~vnGfde~----------------------f----~gW--G~--ED~Dl~~Rl~~~g~~~~~~~~ 67 (78)
T PF02709_consen 18 NFFGGVFAISREDFEKVNGFDER----------------------F----WGW--GG--EDDDLYNRLWKAGLKIVRVPG 67 (78)
T ss_dssp T---SEEEEEHHHHHHTTSS-SS---------------------------TSC--SS--HHHHHHHHHHHTT---B-SST
T ss_pred CeeEEEEEEeHHHHHHcCCCCcc----------------------c----ccc--Cc--cHHHHHHHHHHcCCeEEecCC
Confidence 34677777888888999998762 0 122 33 999999999999998766543
No 177
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=27.27 E-value=39 Score=30.83 Aligned_cols=30 Identities=37% Similarity=0.778 Sum_probs=23.5
Q ss_pred CCccccccCcc--c-cccCCCCeeeccCCCCCc
Q 039678 33 DGQVCEICGDE--I-GKMANGDLFLACEECGFP 62 (1015)
Q Consensus 33 ~~~~c~~c~~~--v-g~~~~g~~f~ac~ec~fp 62 (1015)
.|-+|.-|+.- | ...+||...+-|-+|+|.
T Consensus 7 AGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 7 AGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred cCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 46689999854 4 446789999999999984
No 178
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=26.85 E-value=2e+02 Score=36.69 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=30.6
Q ss_pred CCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHH
Q 039678 485 PHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMC 529 (1015)
Q Consensus 485 ~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amc 529 (1015)
=.++|+-.|=-++-... +.+.+||-.+|||.|+ |.++.|=+-
T Consensus 145 vr~gk~egm~~g~~la~-~~g~~yvgfidadny~--pg~v~ey~~ 186 (694)
T PRK14502 145 IRSGKAEGMILGIILTM-FSGRDYVGFIDTDNYI--PGAVWEYAK 186 (694)
T ss_pred eecCcchHHHHHHHHHH-hcCCceEeEeeccCCC--CchHHHHHH
Confidence 34669988875443322 4789999999999998 567777544
No 179
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.72 E-value=31 Score=42.11 Aligned_cols=49 Identities=29% Similarity=0.610 Sum_probs=30.6
Q ss_pred ccCCCC-eeeccCCCCCc-cchhhh---HHHHhhCCCCCCCCccccccccCCCC
Q 039678 46 KMANGD-LFLACEECGFP-VCRPCY---EYERREGTQLCPQCKTRYKRIKGSPR 94 (1015)
Q Consensus 46 ~~~~g~-~f~ac~ec~fp-vCr~Cy---eyer~eG~~~Cp~Ckt~ykr~kgsp~ 94 (1015)
++-+|- .++.|.+|+.. .|.-|= .|-.+++.-.|..|+..++-..-||.
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~ 258 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQ 258 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCC
Confidence 344565 47778888765 366663 33345555667777777766666664
No 180
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=26.42 E-value=75 Score=36.52 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=36.5
Q ss_pred cccchhHHHHhhhhhcCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCC--CCcEEEEecCCCCc
Q 039678 281 IQRETYLERLSIRYEREGEPNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPV--DKISCYISDDGASL 351 (1015)
Q Consensus 281 v~R~~~~drL~~r~~~~~~~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~--~kl~~yvsDDG~s~ 351 (1015)
++|-..++.|..+++- -=+|.|||+-.| ...+...+..++....|. +++++.+.=+....
T Consensus 10 ~drL~~l~~l~~~W~G------PiSvAvf~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~H~v~~~~~~ 71 (317)
T PF13896_consen 10 VDRLDHLEELCERWDG------PISVAVFVPGPD-----AKQALDAISYLLRCCCPRVRKNVTFHLVFPNSHF 71 (317)
T ss_pred HHHHHHHHHHHHhCCC------CEEEEEEecchh-----HHHHHHHHHHHHHhcCHHhHhhEEEEEEeecccC
Confidence 3444455666666632 236999999876 345566677766666664 46777665554443
No 181
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=26.28 E-value=44 Score=28.95 Aligned_cols=12 Identities=42% Similarity=0.717 Sum_probs=9.6
Q ss_pred cccccCcccccc
Q 039678 36 VCEICGDEIGKM 47 (1015)
Q Consensus 36 ~c~~c~~~vg~~ 47 (1015)
.|..||.+|-+.
T Consensus 4 ~CP~CG~~iev~ 15 (54)
T TIGR01206 4 ECPDCGAEIELE 15 (54)
T ss_pred CCCCCCCEEecC
Confidence 688888887775
No 182
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=25.98 E-value=34 Score=45.60 Aligned_cols=48 Identities=27% Similarity=0.681 Sum_probs=30.7
Q ss_pred ccccccCccccccCCCCeeeccCCCCCcc-----chhhhHHHH--hhCCCCCCCCccccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPV-----CRPCYEYER--REGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpv-----Cr~Cyeyer--~eG~~~Cp~Ckt~ykr~ 89 (1015)
..|.-||..+-. .-|.+|+-+. |..|=-.-- ..+...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888886422 2688888664 777753211 12356899999876543
No 183
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=25.94 E-value=42 Score=26.54 Aligned_cols=31 Identities=32% Similarity=0.649 Sum_probs=22.7
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHH
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYE 71 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeye 71 (1015)
...|..|++.. .-.-|.+|.-++|..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45777777542 45679999999999999653
No 184
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=25.77 E-value=19 Score=25.77 Aligned_cols=12 Identities=33% Similarity=1.110 Sum_probs=5.6
Q ss_pred hhCCCCCCCCcc
Q 039678 73 REGTQLCPQCKT 84 (1015)
Q Consensus 73 ~eG~~~Cp~Ckt 84 (1015)
.++.+-||+|++
T Consensus 10 ~~~~~fC~~CG~ 21 (23)
T PF13240_consen 10 EDDAKFCPNCGT 21 (23)
T ss_pred CCcCcchhhhCC
Confidence 344444555544
No 185
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.71 E-value=34 Score=43.63 Aligned_cols=51 Identities=22% Similarity=0.539 Sum_probs=32.0
Q ss_pred ccccCCCCe-eeccCCCCCcc-chhh---hHHHHhhCCCCCCCCccccccccCCCC
Q 039678 44 IGKMANGDL-FLACEECGFPV-CRPC---YEYERREGTQLCPQCKTRYKRIKGSPR 94 (1015)
Q Consensus 44 vg~~~~g~~-f~ac~ec~fpv-Cr~C---yeyer~eG~~~Cp~Ckt~ykr~kgsp~ 94 (1015)
+-++-+|-- ++.|++|++.. |..| +.|-+..+.-.|.+|+...+-.+-||.
T Consensus 425 lflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~ 480 (730)
T COG1198 425 LFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPE 480 (730)
T ss_pred EEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCC
Confidence 445566764 88888888753 6666 333455555667777666665555653
No 186
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=25.62 E-value=42 Score=43.66 Aligned_cols=55 Identities=24% Similarity=0.431 Sum_probs=31.5
Q ss_pred CCccccccCcc--ccccC-CCCeeeccCCCCCccchhhhHHHH-----------hhCCCCCCCCcccccccc
Q 039678 33 DGQVCEICGDE--IGKMA-NGDLFLACEECGFPVCRPCYEYER-----------REGTQLCPQCKTRYKRIK 90 (1015)
Q Consensus 33 ~~~~c~~c~~~--vg~~~-~g~~f~ac~ec~fpvCr~Cyeyer-----------~eG~~~Cp~Ckt~ykr~k 90 (1015)
....|..||.. +.... .| .|++|. +||-|+-=....+ ......||.|+.+....+
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~ 659 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRH 659 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEec
Confidence 45689999864 32223 45 699994 5777642111111 112468999986665433
No 187
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=25.32 E-value=4.1e+02 Score=29.43 Aligned_cols=61 Identities=20% Similarity=0.421 Sum_probs=44.9
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCC
Q 039678 307 DIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSI 376 (1015)
Q Consensus 307 DvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~i 376 (1015)
-|+|+|-+ ..|.|+-.|+.++.+..++.+.+.+.=-.||...+...-| + -.++ -||+.|+.
T Consensus 3 ~iLlatlG---~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll-~-g~~~----~l~~~y~~ 63 (224)
T PF09623_consen 3 NILLATLG---TSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL-D-GGLQ----RLCQDYYL 63 (224)
T ss_pred eEEEEecC---CCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH-H-HHHH----HHHHhhcC
Confidence 37899988 7789999999999999999898888877888776544333 0 0122 37777764
No 188
>PTZ00293 thymidine kinase; Provisional
Probab=24.99 E-value=35 Score=37.22 Aligned_cols=35 Identities=26% Similarity=0.706 Sum_probs=23.1
Q ss_pred ccccccCccccc----cCCCCe-eeccCCCCCccchhhhH
Q 039678 35 QVCEICGDEIGK----MANGDL-FLACEECGFPVCRPCYE 69 (1015)
Q Consensus 35 ~~c~~c~~~vg~----~~~g~~-f~ac~ec~fpvCr~Cye 69 (1015)
.+|..||.+--. .++|+. .+-=+|=--++||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 589999988432 334444 33333556789999995
No 189
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=24.94 E-value=38 Score=34.98 Aligned_cols=45 Identities=31% Similarity=0.625 Sum_probs=39.6
Q ss_pred cccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 43 EIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 43 ~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
-||+..+|-.=+-|.-|+|.-|..=.|-++..-+-.=|+|--+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 478888888888999999999999888888877789999999995
No 190
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.89 E-value=47 Score=35.40 Aligned_cols=45 Identities=24% Similarity=0.741 Sum_probs=35.5
Q ss_pred ccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTR 85 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ 85 (1015)
-.|.||=+.+-.- +-|+= +||---|+.|-+..+|.+ ..||-|+.+
T Consensus 132 ~~CPiCl~~~sek----~~vsT-kCGHvFC~~Cik~alk~~-~~CP~C~kk 176 (187)
T KOG0320|consen 132 YKCPICLDSVSEK----VPVST-KCGHVFCSQCIKDALKNT-NKCPTCRKK 176 (187)
T ss_pred cCCCceecchhhc----ccccc-ccchhHHHHHHHHHHHhC-CCCCCcccc
Confidence 4788887775442 22444 899999999999999999 789999873
No 191
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=24.82 E-value=32 Score=26.41 Aligned_cols=24 Identities=42% Similarity=1.142 Sum_probs=11.2
Q ss_pred cccccCccccccCCCCeeeccCCCCC
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGF 61 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~f 61 (1015)
.|..|+.+-.. +||..|| |.+|++
T Consensus 4 ~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp --TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCccee-ccCCEEe-CCcccc
Confidence 57778877555 6677665 778775
No 192
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.63 E-value=24 Score=35.65 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=8.7
Q ss_pred CCCCCCCCcccc
Q 039678 75 GTQLCPQCKTRY 86 (1015)
Q Consensus 75 G~~~Cp~Ckt~y 86 (1015)
..-.||.|+.+=
T Consensus 106 ~~~~CP~Cgs~~ 117 (135)
T PRK03824 106 AFLKCPKCGSRD 117 (135)
T ss_pred cCcCCcCCCCCC
Confidence 345699999763
No 193
>PRK14873 primosome assembly protein PriA; Provisional
Probab=24.56 E-value=49 Score=41.87 Aligned_cols=10 Identities=30% Similarity=0.909 Sum_probs=5.8
Q ss_pred CCCCCCCccc
Q 039678 76 TQLCPQCKTR 85 (1015)
Q Consensus 76 ~~~Cp~Ckt~ 85 (1015)
...||.|+..
T Consensus 422 p~~Cp~Cgs~ 431 (665)
T PRK14873 422 DWRCPRCGSD 431 (665)
T ss_pred CccCCCCcCC
Confidence 3566666554
No 194
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.54 E-value=86 Score=37.35 Aligned_cols=50 Identities=20% Similarity=0.095 Sum_probs=42.0
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCch
Q 039678 300 PNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLL 352 (1015)
Q Consensus 300 ~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~ 352 (1015)
..+||+-.|+|+-.| |--....+||.|+|.-.=+.=-..+.+.||++.+.
T Consensus 120 ~~dlp~TsviITfHN---EARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dp 169 (559)
T KOG3738|consen 120 KVDLPPTSVIITFHN---EARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDP 169 (559)
T ss_pred ecCCCCceEEEEecc---HHHHHHHHHHHHHHcCChHHhhheeEEecCCCCCh
Confidence 357999999999998 99999999999999875333255799999999975
No 195
>PF12773 DZR: Double zinc ribbon
Probab=24.48 E-value=50 Score=27.22 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=7.0
Q ss_pred CccccccCcccc
Q 039678 34 GQVCEICGDEIG 45 (1015)
Q Consensus 34 ~~~c~~c~~~vg 45 (1015)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 446666666655
No 196
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=24.35 E-value=69 Score=35.18 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=54.3
Q ss_pred hcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhhcccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCC
Q 039678 656 KFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVMSCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPK 735 (1015)
Q Consensus 656 ~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~ 735 (1015)
.+|...++.++.+.+++|+++. -| || | -||-+++.||..+|.+.......
T Consensus 111 ~~Gg~~~~~k~~f~~VNGf~n~----------------------f~----GW--G--gEDdd~~~Rl~~~g~~~~r~~~~ 160 (219)
T cd00899 111 YFGGVLALTREQFRKVNGFSNA----------------------YW----GW--G--GEDDDLYNRIKAAGLKITRPSGD 160 (219)
T ss_pred ccccceeeEHHHHHHhCCcCCc----------------------Cc----cC--C--cchHHHHHHHHHCCCeEEeccCc
Confidence 4788888888889999999862 22 34 2 48999999999999887665432
Q ss_pred CC----cc------cccCCCCHHHHHHHhHHhhccchhHh
Q 039678 736 RS----AF------KGSAPINLSDRLNQALRWALGSVEIF 765 (1015)
Q Consensus 736 ~~----af------~G~aP~tl~~~l~QR~RWA~G~lQil 765 (1015)
.. .. ....|.-+.....++.||+..++..+
T Consensus 161 ~~~~~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl 200 (219)
T cd00899 161 TGRYKMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSL 200 (219)
T ss_pred ccceeeeecCCCcccccCHHHHHHHHhhCeEeccCCccce
Confidence 11 00 12344455666777888887776554
No 197
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=23.97 E-value=33 Score=33.24 Aligned_cols=41 Identities=20% Similarity=0.460 Sum_probs=25.1
Q ss_pred ccccCcccccc-CCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 37 CEICGDEIGKM-ANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 37 c~~c~~~vg~~-~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
|.+||...+.. ..-+.|.-+ ...+.|-.|++ .||+|++.|=
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~~ 42 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEELL 42 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEEE
Confidence 89999654433 333344445 35555544544 6999999883
No 198
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=23.91 E-value=22 Score=25.96 Aligned_cols=15 Identities=27% Similarity=0.846 Sum_probs=9.6
Q ss_pred HHhhCCCCCCCCccc
Q 039678 71 ERREGTQLCPQCKTR 85 (1015)
Q Consensus 71 er~eG~~~Cp~Ckt~ 85 (1015)
+..++...||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 335666777777764
No 199
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=23.78 E-value=40 Score=34.59 Aligned_cols=45 Identities=31% Similarity=0.763 Sum_probs=32.1
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccch-hhhHHHHhhCCCCCCCCcccccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCR-PCYEYERREGTQLCPQCKTRYKRIK 90 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr-~Cyeyer~eG~~~Cp~Ckt~ykr~k 90 (1015)
.++|.||-+.+-. --|..|.+|-|. +||.-- +.=|||+|+=+..+
T Consensus 5 t~tC~ic~e~~~K-------YKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~t 50 (157)
T KOG2857|consen 5 TTTCVICLESEIK-------YKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNNT 50 (157)
T ss_pred eeeehhhhcchhh-------ccCCCCCCccccchhhhhc-----cCCccccccCCccc
Confidence 4688888776433 569999999996 788443 33688988766443
No 200
>PF04641 Rtf2: Rtf2 RING-finger
Probab=23.77 E-value=62 Score=36.08 Aligned_cols=51 Identities=22% Similarity=0.543 Sum_probs=37.5
Q ss_pred CCCccccccCccccccCCCC-eeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 32 LDGQVCEICGDEIGKMANGD-LFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~-~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
...-+|.|++... +|. -||+=--||=-+|..|.+-- + ....||.|.++|+.
T Consensus 111 ~~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 3445899998775 454 58887788877888888443 4 44679999999974
No 201
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=23.30 E-value=32 Score=37.21 Aligned_cols=25 Identities=44% Similarity=1.010 Sum_probs=19.3
Q ss_pred ccccccCcccccc----CCCCeeeccCCCCCccchhhhH
Q 039678 35 QVCEICGDEIGKM----ANGDLFLACEECGFPVCRPCYE 69 (1015)
Q Consensus 35 ~~c~~c~~~vg~~----~~g~~f~ac~ec~fpvCr~Cye 69 (1015)
-.|..||+-++-. .||+ |||++||+
T Consensus 173 v~C~kCGE~~~e~~~~~~ng~----------~vC~~C~~ 201 (206)
T COG2191 173 VRCSKCGELFMEPRAVVLNGK----------PVCKPCAE 201 (206)
T ss_pred eeccccCcccccchhhhcCCc----------eecccccc
Confidence 5999999987654 3566 68999985
No 202
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=22.98 E-value=53 Score=24.73 Aligned_cols=28 Identities=36% Similarity=0.971 Sum_probs=21.0
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhh
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPC 67 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~C 67 (1015)
.|.+|+.++ +|..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 589998764 3443888999999887665
No 203
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=22.70 E-value=5.8e+02 Score=30.07 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=21.9
Q ss_pred HhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 039678 936 INTGYEAMRPLIGKLFFVFWVISHLYPFLKGLMGRQ 971 (1015)
Q Consensus 936 i~~~~~~w~~l~g~lf~~~Wvi~~l~Pfl~gL~gR~ 971 (1015)
+++....|. .+...|+...+.+.+|++..-++.+.
T Consensus 287 l~~~~~~~~-~i~~~~~~~a~~~v~~~~~~~~l~~~ 321 (344)
T PF04123_consen 287 LRRDFRLWR-YINAPFFVIAIGLVLYGFSAYFLSIS 321 (344)
T ss_pred HccCcchHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344433354 44556777777777788877776664
No 204
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.61 E-value=33 Score=30.46 Aligned_cols=17 Identities=47% Similarity=1.050 Sum_probs=14.7
Q ss_pred HhhCCCCCCCCcccccc
Q 039678 72 RREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 72 r~eG~~~Cp~Ckt~ykr 88 (1015)
-++|.-.||=|.|+|+-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 46888999999999974
No 205
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=21.54 E-value=66 Score=26.39 Aligned_cols=29 Identities=28% Similarity=0.864 Sum_probs=22.9
Q ss_pred cccccCccccccCCCCeeeccCCC-CCccchhhhH
Q 039678 36 VCEICGDEIGKMANGDLFLACEEC-GFPVCRPCYE 69 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec-~fpvCr~Cye 69 (1015)
.|..|+..| .| ....|.+| .|-+|..||.
T Consensus 2 ~Cd~C~~~i----~G-~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 2 ICDGCQGPI----VG-VRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCcC----cC-CeEECCCCCCccchHHhhC
Confidence 588898743 25 46789999 8999999994
No 206
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=21.41 E-value=43 Score=28.11 Aligned_cols=37 Identities=22% Similarity=0.518 Sum_probs=29.4
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHh
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERR 73 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~ 73 (1015)
.+.|.+|+...+...+. .-|.-|+--+|..|..+...
T Consensus 2 ~~~C~~C~~~F~~~~rk---~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRR---HHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccc---cccCcCcCCcChHHcCCeee
Confidence 46799999988874332 56999999999999987755
No 207
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=21.12 E-value=49 Score=35.63 Aligned_cols=27 Identities=37% Similarity=0.795 Sum_probs=16.7
Q ss_pred ccccccCcc-c----cccCCCCeeeccCCCCC
Q 039678 35 QVCEICGDE-I----GKMANGDLFLACEECGF 61 (1015)
Q Consensus 35 ~~c~~c~~~-v----g~~~~g~~f~ac~ec~f 61 (1015)
-.|..||+. + -...-+++.+-|+|||.
T Consensus 7 ~~Cp~Cg~eev~hEVik~~g~~~lvrC~eCG~ 38 (201)
T COG1326 7 IECPSCGSEEVSHEVIKERGREPLVRCEECGT 38 (201)
T ss_pred EECCCCCcchhhHHHHHhcCCceEEEccCCCc
Confidence 368888833 3 22224456788888874
No 208
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=20.83 E-value=5.1e+02 Score=33.12 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 039678 947 IGKLFFVFWVISHLYPFLKGLMGR 970 (1015)
Q Consensus 947 ~g~lf~~~Wvi~~l~Pfl~gL~gR 970 (1015)
+..-|+++=+++-|.|+++.+||=
T Consensus 440 flsGl~s~il~iGllP~fE~~F~~ 463 (700)
T COG1480 440 FLSGLLSGILVLGLLPYFEALFGL 463 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455666677889999998864
No 209
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.74 E-value=71 Score=37.33 Aligned_cols=58 Identities=22% Similarity=0.508 Sum_probs=41.8
Q ss_pred CCCccccccCccccccCCCCe--eeccCCCCCccchhhhHHHHhhC------CCCCCCCcccccccc
Q 039678 32 LDGQVCEICGDEIGKMANGDL--FLACEECGFPVCRPCYEYERREG------TQLCPQCKTRYKRIK 90 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~~--f~ac~ec~fpvCr~Cyeyer~eG------~~~Cp~Ckt~ykr~k 90 (1015)
.....|.||.+.|+-.. +-. |--=..|..--|-.|+--.|.-. +..||.|++.-+..-
T Consensus 159 s~~k~CGICme~i~ek~-~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA-ASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccc-hhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 55679999999988877 321 32223467778999997777433 489999999988763
No 210
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=20.74 E-value=43 Score=33.69 Aligned_cols=52 Identities=29% Similarity=0.621 Sum_probs=33.7
Q ss_pred CCCccccccCcc--ccccCCC-CeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 32 LDGQVCEICGDE--IGKMANG-DLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 32 ~~~~~c~~c~~~--vg~~~~g-~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
..+..|.-||.. |....++ -.|..| +.||.||-=.-. +.....||+|.-+..
T Consensus 58 ~~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~~~--~~~~~~cp~c~~~~~ 112 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTEKP--KPKEKKCPKCGSRKL 112 (140)
T ss_pred cCceeCCCCCCCceEEEeccCCceEEee--cCCCcCceeecC--CcccccCCcCCCcee
Confidence 445689999943 4444333 379999 799999854322 333345999997443
No 211
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=20.71 E-value=1.2e+02 Score=25.42 Aligned_cols=45 Identities=31% Similarity=0.640 Sum_probs=28.5
Q ss_pred cccccCccccccCCCCeeeccCCCCC---ccchhhhHHHHh-hCCCCCCCCc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGF---PVCRPCYEYERR-EGTQLCPQCK 83 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~f---pvCr~Cyeyer~-eG~~~Cp~Ck 83 (1015)
+|.||-+ +-+++..++.|| .|.- -|=+.|.+.=.. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5889987 333444457788 5642 244577765544 4467899996
No 212
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=20.65 E-value=54 Score=38.48 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=27.0
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCC-CcEEEEecCCCCc
Q 039678 304 APVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVD-KISCYISDDGASL 351 (1015)
Q Consensus 304 P~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~-kl~~yvsDDG~s~ 351 (1015)
-++|++....+ +-.-+++-+++.+...+=.. +|.----+||.+-
T Consensus 191 eGiD~y~gs~~----~arkva~~i~~~~~~~v~eS~~Lvg~d~~tgk~~ 235 (355)
T COG1499 191 EGIDIYLGSRN----AARKVARFILEKFGGEVKESEKLVGRDRFTGKRV 235 (355)
T ss_pred cceEEEEeccc----hHHHHHHHHHHHcCcEEEecceeEEEecCCCceE
Confidence 46999999986 45677777777666555432 3333222377653
No 213
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=20.53 E-value=42 Score=24.88 Aligned_cols=23 Identities=30% Similarity=0.855 Sum_probs=13.9
Q ss_pred chhhhHHHHhhCCCCCCCCccccc
Q 039678 64 CRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 64 Cr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
|-.|. -+..+..+.||.|+-.++
T Consensus 3 CP~C~-~~V~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 3 CPECG-AEVPESAKFCPHCGYDFE 25 (26)
T ss_pred CCCCc-CCchhhcCcCCCCCCCCc
Confidence 44444 233666788888876653
No 214
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=52 Score=34.97 Aligned_cols=44 Identities=27% Similarity=0.710 Sum_probs=35.4
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKT 84 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt 84 (1015)
....|.||-+..-.. ....|+--.|+.|-+.-.. +.-.||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 445899998885443 5667899999999988777 7799999993
Done!