Query 039678
Match_columns 1015
No_of_seqs 428 out of 1899
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 20:58:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 1E-50 3.5E-55 497.4 51.5 491 226-968 65-571 (802)
2 1weo_A Cellulose synthase, cat 100.0 2.1E-43 7.1E-48 315.7 8.4 84 26-109 8-91 (93)
3 2z86_A Chondroitin synthase; G 99.5 4.4E-14 1.5E-18 167.5 16.8 128 300-552 89-217 (625)
4 1xhb_A Polypeptide N-acetylgal 99.5 1.5E-13 5.1E-18 157.7 16.1 116 300-534 25-143 (472)
5 2d7i_A Polypeptide N-acetylgal 99.4 6.2E-13 2.1E-17 157.4 16.0 115 301-534 109-224 (570)
6 3bcv_A Putative glycosyltransf 99.4 8.2E-13 2.8E-17 136.1 14.4 110 302-534 3-112 (240)
7 1qg8_A Protein (spore coat pol 99.4 1.5E-13 5.1E-18 143.2 7.0 124 304-550 1-129 (255)
8 2ffu_A Ppgalnact-2, polypeptid 99.4 2.6E-12 8.9E-17 149.0 14.8 113 300-534 62-174 (501)
9 2z86_A Chondroitin synthase; G 99.3 6.1E-12 2.1E-16 149.2 12.9 125 301-552 372-497 (625)
10 3ckj_A Putative uncharacterize 99.0 1.8E-09 6.3E-14 118.8 13.0 50 302-356 46-95 (329)
11 4fix_A UDP-galactofuranosyl tr 98.9 2.4E-09 8.3E-14 129.2 13.0 47 301-351 177-224 (657)
12 3l7i_A Teichoic acid biosynthe 98.9 1.5E-10 5.2E-15 140.5 0.0 110 304-534 2-111 (729)
13 2fy7_A Beta-1,4-galactosyltran 98.6 5.4E-08 1.8E-12 106.3 8.8 54 713-766 201-264 (287)
14 3f1y_A Mannosyl-3-phosphoglyce 98.2 5.9E-06 2E-10 93.8 11.4 51 487-545 165-216 (387)
15 2nxv_A ATP synthase subunits r 97.9 9.8E-05 3.3E-09 78.0 13.6 46 489-543 62-112 (249)
16 1e4u_A Transcriptional repress 96.7 0.0018 6.2E-08 57.6 5.7 53 33-88 10-62 (78)
17 1fo8_A Alpha-1,3-mannosyl-glyc 96.2 0.0095 3.3E-07 66.8 8.5 44 303-351 1-44 (343)
18 2bo4_A Mannosylglycerate synth 95.9 0.027 9.2E-07 64.3 11.0 42 487-532 74-119 (397)
19 2zu9_A Mannosyl-3-phosphoglyce 95.1 0.075 2.6E-06 60.6 10.6 38 488-528 144-181 (394)
20 2wvl_A Mannosyl-3-phosphoglyce 92.4 0.12 4.2E-06 58.2 5.7 42 303-353 52-93 (391)
21 2d8s_A Cellular modulator of i 89.5 0.67 2.3E-05 41.2 6.6 56 30-88 11-70 (80)
22 1vyx_A ORF K3, K3RING; zinc-bi 88.5 0.42 1.4E-05 40.3 4.2 51 32-87 4-58 (60)
23 2ea6_A Ring finger protein 4; 88.0 0.55 1.9E-05 39.1 4.7 55 32-88 13-68 (69)
24 2csz_A Synaptotagmin-like prot 86.6 0.34 1.2E-05 43.1 2.6 62 10-73 1-62 (76)
25 3ng2_A RNF4, snurf, ring finge 86.4 0.37 1.3E-05 40.6 2.7 55 32-88 8-63 (71)
26 1g25_A CDK-activating kinase a 86.0 0.64 2.2E-05 38.7 4.0 53 34-88 3-55 (65)
27 2ect_A Ring finger protein 126 84.8 2.3 7.7E-05 36.5 7.1 53 32-89 13-65 (78)
28 2xeu_A Ring finger protein 4; 84.7 0.37 1.3E-05 39.5 1.9 53 34-88 3-56 (64)
29 1t1h_A Gspef-atpub14, armadill 83.9 0.74 2.5E-05 39.6 3.5 48 33-87 7-54 (78)
30 1iym_A EL5; ring-H2 finger, ub 82.9 1.4 4.8E-05 35.2 4.6 50 33-86 4-53 (55)
31 2ckl_B Ubiquitin ligase protei 82.7 0.81 2.8E-05 45.3 3.7 48 35-88 55-102 (165)
32 2ecm_A Ring finger and CHY zin 81.5 1.4 4.9E-05 35.0 4.1 50 33-86 4-53 (55)
33 2ysl_A Tripartite motif-contai 81.3 1.2 4E-05 37.7 3.7 49 33-88 19-69 (73)
34 3fl2_A E3 ubiquitin-protein li 79.7 1.4 4.6E-05 41.6 4.0 47 35-88 53-99 (124)
35 1chc_A Equine herpes virus-1 r 79.6 2.1 7.3E-05 35.6 4.8 49 34-89 5-53 (68)
36 1v87_A Deltex protein 2; ring- 79.4 1.8 6.3E-05 39.8 4.7 59 33-91 24-97 (114)
37 2ecy_A TNF receptor-associated 79.0 2.5 8.5E-05 35.2 5.0 49 33-88 14-62 (66)
38 2ct2_A Tripartite motif protei 78.7 2 7E-05 37.4 4.5 53 33-88 14-68 (88)
39 2kiz_A E3 ubiquitin-protein li 76.2 3 0.0001 34.8 4.8 53 32-89 12-64 (69)
40 2c2l_A CHIP, carboxy terminus 75.3 2.9 0.0001 43.9 5.4 49 32-87 206-254 (281)
41 2f42_A STIP1 homology and U-bo 74.8 2 7E-05 43.9 3.9 48 33-87 105-152 (179)
42 2ecv_A Tripartite motif-contai 74.5 2.9 9.9E-05 35.9 4.3 49 33-88 18-71 (85)
43 2ecw_A Tripartite motif-contai 74.2 2.9 0.0001 35.9 4.3 48 34-88 19-71 (85)
44 3lrq_A E3 ubiquitin-protein li 73.8 2.5 8.4E-05 38.5 3.8 47 35-87 23-69 (100)
45 2djb_A Polycomb group ring fin 72.5 7.5 0.00026 32.8 6.4 49 34-89 15-63 (72)
46 1x4j_A Ring finger protein 38; 72.4 2.5 8.7E-05 36.0 3.4 52 33-89 22-73 (75)
47 3vk6_A E3 ubiquitin-protein li 70.8 2.3 8E-05 39.7 2.9 50 35-90 2-51 (101)
48 2zet_C Melanophilin; complex, 69.8 0.79 2.7E-05 45.8 -0.5 51 33-85 67-117 (153)
49 3l11_A E3 ubiquitin-protein li 69.2 1.8 6.1E-05 40.1 1.8 48 34-88 15-62 (115)
50 2ep4_A Ring finger protein 24; 68.5 6.7 0.00023 33.1 5.1 52 33-89 14-65 (74)
51 3hct_A TNF receptor-associated 67.0 3.7 0.00013 38.3 3.5 48 34-88 18-65 (118)
52 2ecn_A Ring finger protein 141 66.7 2.5 8.5E-05 35.5 2.0 48 33-89 14-61 (70)
53 2ecl_A Ring-box protein 2; RNF 66.0 5.3 0.00018 34.9 4.1 56 32-88 13-76 (81)
54 2y43_A E3 ubiquitin-protein li 65.9 4.7 0.00016 36.2 3.9 48 34-88 22-69 (99)
55 1z6u_A NP95-like ring finger p 64.9 4.8 0.00016 39.5 4.0 47 35-88 79-125 (150)
56 2kr4_A Ubiquitin conjugation f 64.0 8.4 0.00029 34.1 5.0 47 33-87 13-59 (85)
57 2kre_A Ubiquitin conjugation f 64.0 4.3 0.00015 37.3 3.2 47 33-87 28-74 (100)
58 2csy_A Zinc finger protein 183 63.3 12 0.00041 32.2 5.8 46 34-87 15-60 (81)
59 2l0b_A E3 ubiquitin-protein li 62.8 5.1 0.00017 35.7 3.4 50 33-87 39-88 (91)
60 1zbd_B Rabphilin-3A; G protein 62.8 3.6 0.00012 40.2 2.6 38 31-71 52-90 (134)
61 2d8t_A Dactylidin, ring finger 62.8 6.7 0.00023 33.0 4.0 50 31-88 12-61 (71)
62 1jm7_A BRCA1, breast cancer ty 60.2 6.5 0.00022 35.7 3.8 47 35-88 22-70 (112)
63 4ayc_A E3 ubiquitin-protein li 60.2 5.5 0.00019 38.2 3.4 45 36-88 55-99 (138)
64 1rmd_A RAG1; V(D)J recombinati 59.6 6.9 0.00023 36.2 3.8 48 34-88 23-70 (116)
65 2yur_A Retinoblastoma-binding 59.5 13 0.00043 31.7 5.2 50 33-88 14-64 (74)
66 2ckl_A Polycomb group ring fin 59.4 6.3 0.00022 36.0 3.5 48 34-88 15-62 (108)
67 2gvi_A Conserved hypothetical 59.3 2.8 9.5E-05 43.5 1.2 29 32-70 170-202 (204)
68 3hcs_A TNF receptor-associated 58.3 5.6 0.00019 39.3 3.1 48 34-88 18-65 (170)
69 3h0g_L DNA-directed RNA polyme 58.3 5.2 0.00018 34.4 2.5 29 33-63 20-48 (63)
70 3ztg_A E3 ubiquitin-protein li 57.2 6.6 0.00022 34.6 3.1 48 34-87 13-61 (92)
71 2ysj_A Tripartite motif-contai 57.2 10 0.00035 31.0 4.1 43 33-82 19-63 (63)
72 1jm7_B BARD1, BRCA1-associated 57.1 6.9 0.00023 36.4 3.4 45 34-87 22-66 (117)
73 2ea5_A Cell growth regulator w 57.1 12 0.00043 31.7 4.7 45 32-88 13-58 (68)
74 3vth_A Hydrogenase maturation 56.9 5.5 0.00019 49.1 3.4 74 16-89 92-196 (761)
75 2egp_A Tripartite motif-contai 56.5 3.9 0.00013 34.8 1.5 48 34-88 12-65 (79)
76 4ap4_A E3 ubiquitin ligase RNF 56.1 7.1 0.00024 36.2 3.3 55 32-88 70-125 (133)
77 1wgm_A Ubiquitin conjugation f 55.4 7.9 0.00027 35.4 3.4 46 34-87 22-68 (98)
78 3d00_A Tungsten formylmethanof 52.1 4.2 0.00014 41.9 1.1 26 32-69 161-186 (191)
79 3dpl_R Ring-box protein 1; ubi 52.0 12 0.0004 34.9 4.0 54 33-87 36-100 (106)
80 3nw0_A Non-structural maintena 51.6 9.2 0.00032 40.6 3.6 48 34-87 180-228 (238)
81 4ap4_A E3 ubiquitin ligase RNF 50.5 6.8 0.00023 36.3 2.2 55 33-89 6-61 (133)
82 2vje_A E3 ubiquitin-protein li 49.0 8.9 0.0003 32.1 2.4 50 31-88 5-57 (64)
83 2y1n_A E3 ubiquitin-protein li 46.4 14 0.00047 42.1 4.2 47 35-88 333-379 (389)
84 2kdx_A HYPA, hydrogenase/ureas 46.2 3.5 0.00012 39.0 -0.6 30 53-89 73-103 (119)
85 2ku3_A Bromodomain-containing 44.8 7.5 0.00026 33.9 1.3 57 27-85 9-66 (71)
86 2js4_A UPF0434 protein BB2007; 44.3 2.6 8.9E-05 36.8 -1.6 43 53-100 8-50 (70)
87 1bor_A Transcription factor PM 44.1 22 0.00075 28.7 4.0 45 34-89 6-50 (56)
88 1xwh_A Autoimmune regulator; P 43.6 8.6 0.00029 32.7 1.5 51 28-85 2-55 (66)
89 2vrw_B P95VAV, VAV1, proto-onc 43.5 11 0.00037 42.3 2.8 35 32-69 355-390 (406)
90 2ct0_A Non-SMC element 1 homol 43.4 13 0.00046 32.5 2.8 48 34-87 15-63 (74)
91 2ecg_A Baculoviral IAP repeat- 42.8 15 0.0005 31.5 2.9 43 34-88 25-68 (75)
92 1m3v_A FLIN4, fusion of the LI 42.2 21 0.0007 33.5 4.1 24 62-87 56-80 (122)
93 3knv_A TNF receptor-associated 41.0 8 0.00027 37.6 1.0 46 34-86 31-76 (141)
94 3a43_A HYPD, hydrogenase nicke 40.9 5.4 0.00018 39.0 -0.2 14 76-89 107-120 (139)
95 2dj7_A Actin-binding LIM prote 40.3 20 0.00069 31.1 3.4 39 26-64 7-53 (80)
96 3ky9_A Proto-oncogene VAV; cal 40.0 12 0.0004 44.4 2.5 36 32-70 527-563 (587)
97 2ecj_A Tripartite motif-contai 39.4 45 0.0015 26.3 5.2 43 33-82 14-58 (58)
98 2hf1_A Tetraacyldisaccharide-1 39.4 3.2 0.00011 36.1 -1.8 43 53-100 8-50 (68)
99 2k16_A Transcription initiatio 39.3 11 0.00038 32.5 1.6 52 33-88 17-71 (75)
100 2xjy_A Rhombotin-2; oncoprotei 38.9 18 0.00062 33.9 3.2 46 36-86 31-76 (131)
101 4g9i_A Hydrogenase maturation 38.6 10 0.00036 46.7 1.8 60 30-89 102-191 (772)
102 1twf_L ABC10-alpha, DNA-direct 38.1 13 0.00045 32.4 1.8 25 35-61 29-53 (70)
103 1tot_A CREB-binding protein; z 36.3 14 0.00048 30.3 1.6 31 34-70 6-37 (52)
104 2vje_B MDM4 protein; proto-onc 35.5 20 0.00068 29.8 2.5 47 34-88 7-56 (63)
105 1wim_A KIAA0161 protein; ring 35.1 21 0.00073 31.7 2.8 50 33-86 4-62 (94)
106 2jtn_A LIM domain-binding prot 35.1 44 0.0015 33.3 5.5 53 31-86 57-129 (182)
107 2cup_A Skeletal muscle LIM-pro 34.7 26 0.00088 31.3 3.3 23 61-86 54-76 (101)
108 2jr6_A UPF0434 protein NMA0874 33.3 5.2 0.00018 34.8 -1.5 34 68-101 18-51 (68)
109 2l5u_A Chromodomain-helicase-D 33.1 27 0.00091 29.2 2.9 47 31-84 8-57 (61)
110 2jny_A Uncharacterized BCR; st 33.0 5.8 0.0002 34.4 -1.2 40 62-101 14-53 (67)
111 4ic3_A E3 ubiquitin-protein li 32.8 22 0.00077 30.3 2.5 42 35-88 25-67 (74)
112 2co8_A NEDD9 interacting prote 32.1 36 0.0012 29.5 3.7 62 29-93 10-79 (82)
113 3v43_A Histone acetyltransfera 31.7 35 0.0012 31.8 3.8 51 34-84 5-63 (112)
114 2gmg_A Hypothetical protein PF 31.4 14 0.00049 34.7 1.0 26 55-86 69-94 (105)
115 2lri_C Autoimmune regulator; Z 31.0 32 0.0011 29.5 3.1 46 32-84 10-58 (66)
116 3t6p_A Baculoviral IAP repeat- 30.5 24 0.00083 39.4 2.9 43 34-88 295-338 (345)
117 2l43_A N-teminal domain from h 30.4 19 0.00065 32.5 1.7 54 31-86 22-76 (88)
118 3lqh_A Histone-lysine N-methyl 29.6 26 0.00089 35.8 2.7 54 33-86 1-64 (183)
119 1rut_X Flinc4, fusion protein 29.3 32 0.0011 34.6 3.3 24 62-87 56-80 (188)
120 2yu4_A E3 SUMO-protein ligase 29.2 40 0.0014 30.1 3.6 46 34-85 7-59 (94)
121 3htk_C E3 SUMO-protein ligase 29.1 41 0.0014 36.4 4.2 50 32-87 179-231 (267)
122 1m4f_A Hepcidin; strand-loop-s 28.8 4.7 0.00016 28.9 -2.0 23 60-84 3-25 (26)
123 2gai_A DNA topoisomerase I; zi 28.7 13 0.00045 44.8 0.4 45 36-85 574-621 (633)
124 1w4r_A Thymidine kinase; type 28.6 16 0.00054 37.8 0.9 35 35-69 152-191 (195)
125 4a0k_B E3 ubiquitin-protein li 27.4 15 0.00052 34.9 0.5 53 34-87 48-111 (117)
126 2orw_A Thymidine kinase; TMTK, 27.4 21 0.00073 35.6 1.6 35 35-69 138-178 (184)
127 2d8y_A Eplin protein; LIM doma 27.2 67 0.0023 28.2 4.7 37 26-62 7-51 (91)
128 2pk7_A Uncharacterized protein 27.2 4.9 0.00017 35.0 -2.7 32 69-100 19-50 (69)
129 1mm2_A MI2-beta; PHD, zinc fin 25.6 45 0.0015 27.8 3.0 47 32-85 7-56 (61)
130 2xqn_T Testin, TESS; metal-bin 25.5 40 0.0014 31.3 3.0 43 36-87 32-74 (126)
131 1dl6_A Transcription factor II 24.9 62 0.0021 26.9 3.7 13 74-86 28-40 (58)
132 3ttc_A HYPF, transcriptional r 24.8 22 0.00074 43.2 1.2 55 32-86 15-99 (657)
133 1f62_A Transcription factor WS 24.4 35 0.0012 27.1 2.1 45 36-84 2-49 (51)
134 1we9_A PHD finger family prote 23.8 29 0.00098 29.0 1.5 53 33-88 5-61 (64)
135 3e2i_A Thymidine kinase; Zn-bi 23.7 8.8 0.0003 40.4 -2.1 36 35-70 163-209 (219)
136 2cor_A Pinch protein; LIM doma 23.4 66 0.0022 27.6 3.8 38 29-66 10-54 (79)
137 1x61_A Thyroid receptor intera 22.7 91 0.0031 25.8 4.5 9 61-69 54-62 (72)
138 2yho_A E3 ubiquitin-protein li 22.3 39 0.0013 29.4 2.1 42 35-88 19-61 (79)
139 2rgt_A Fusion of LIM/homeobox 20.9 76 0.0026 31.2 4.2 24 60-86 52-75 (169)
140 1a7i_A QCRP2 (LIM1); LIM domai 20.1 45 0.0015 28.5 2.0 12 34-45 7-18 (81)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1e-50 Score=497.39 Aligned_cols=491 Identities=22% Similarity=0.344 Sum_probs=376.5
Q ss_pred hHH-HHHHHHHHHHHHHHHhhccCCCc-----hhHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHhhhhhcCCC
Q 039678 226 YRM-VVAARLVIMVLFLQYRIMNPVND-----AVGLWLTSVICEIWFGFSWILDQFPKWLPIQRETYLERLSIRYEREGE 299 (1015)
Q Consensus 226 yR~-~i~~~l~~l~~yl~wRi~~~~~~-----~~~~Wl~~~~~E~~f~~~wil~~~~kw~Pv~R~~~~drL~~r~~~~~~ 299 (1015)
.|+ ++++.+++.++|++||++.+++. ..++|++++++|+++.+.|++..+..++|..|...++ ..
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------LQ 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------CC
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---------CC
Confidence 344 56677778899999999987653 2467888999999999999999999999998875422 23
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCC
Q 039678 300 PNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPR 379 (1015)
Q Consensus 300 ~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR 379 (1015)
++++|.|+|+||||| |++.++.+|+.|++++|||.+++.|+|+|||+++-|.+.
T Consensus 136 ~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~----------------------- 189 (802)
T 4hg6_A 136 PEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS----------------------- 189 (802)
T ss_dssp TTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred ccCCCcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-----------------------
Confidence 567999999999999 999999999999999999999999999999999866542
Q ss_pred CcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccC
Q 039678 380 APEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGR 459 (1015)
Q Consensus 380 ~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~ 459 (1015)
.+|+.+++..+ .+++ ++.++++
T Consensus 190 ----------------~d~~i~~~~~~---~~~~----l~~~~~~----------------------------------- 211 (802)
T 4hg6_A 190 ----------------PDPELAQKAQE---RRRE----LQQLCRE----------------------------------- 211 (802)
T ss_dssp ----------------SSHHHHHHHHH---HHHH----HHHHHHH-----------------------------------
T ss_pred ----------------CCHHHHHHHHh---hhHH----HHHHHHh-----------------------------------
Confidence 11222222211 1112 1222110
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhh-cCCCCCc
Q 039678 460 EGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFL-MDPQTGK 538 (1015)
Q Consensus 460 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff-~Dp~~g~ 538 (1015)
.++.|+.|++ ++++||||+|.+++. ++++||+++|||+++ .|++|++++.+| .||
T Consensus 212 -----------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~~-~pd~L~~lv~~~~~dp---- 267 (802)
T 4hg6_A 212 -----------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHVP-SRDFLARTVGYFVEDP---- 267 (802)
T ss_dssp -----------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEEE-CTTHHHHHHHHHHHSS----
T ss_pred -----------cCcEEEEecC----CCCcchHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHHhcCC----
Confidence 0378899988 677899999999997 689999999999995 899999999998 588
Q ss_pred ceEEEecCccccCCCcc-------cchhhhHHHhhhhhhccccccCCccccccccchhhhhhcCCCCCccCCCCCCCCCC
Q 039678 539 RVCYVQFPQRFDGIDKS-------DRYSNRNRVFFDINMKGLDGIQGPMYVGTGCVFRRQALYGHEPPKAAKRPRMGTCG 611 (1015)
Q Consensus 539 ~va~VQ~PQ~F~nid~~-------D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~ 611 (1015)
++++||+|+.+.|.++. .++.+++..|+...+.+.+.+++++++|++++|||+++
T Consensus 268 ~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al------------------ 329 (802)
T 4hg6_A 268 DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRAL------------------ 329 (802)
T ss_dssp SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHH------------------
T ss_pred CeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHH------------------
Confidence 79999999999987642 44566778899999999999999999999999999887
Q ss_pred CCCCcccchhhhccchhhHHHHhhhhcchhhhhhhhhhhhhhhhhcCchhhhHhhhhhhhCCCCCCCchHHHHHHHHHhh
Q 039678 612 CCPCFRRQKQYQKNSKANVIREAANLEGMEENKEHLLSQMNSERKFGQSAIFVTSTLVEQGGVPASSSREALLKEAIHVM 691 (1015)
Q Consensus 612 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~~~ea~~v~ 691 (1015)
++.||+++
T Consensus 330 ---------------------------------------------------------~~vGgf~~--------------- 337 (802)
T 4hg6_A 330 ---------------------------------------------------------DEAGGFAG--------------- 337 (802)
T ss_dssp ---------------------------------------------------------HHHTTCCC---------------
T ss_pred ---------------------------------------------------------HHcCCcCC---------------
Confidence 24676554
Q ss_pred cccccccCccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcccccCCCCHHHHHHHhHHhhccchhHhhhcCCc
Q 039678 692 SCDYEDKTEWGTELGWIYGSVTEDILTGFKLHSRGWRSIYCMPKRSAFKGSAPINLSDRLNQALRWALGSVEIFFSRHNP 771 (1015)
Q Consensus 692 sc~YE~~T~WG~evGw~ygsvTED~~tg~rL~~~GwrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~P 771 (1015)
++++||.+++++++++||+++|++++.. ++.+|+|+.++++||.||++|.+|+++. ++|
T Consensus 338 ------------------~~~~ED~~l~~rl~~~G~ri~~~~~~~~--~~~~p~t~~~~~~Qr~RW~~G~~q~l~~-~~p 396 (802)
T 4hg6_A 338 ------------------ETITEDAETALEIHSRGWKSLYIDRAMI--AGLQPETFASFIQQRGRWATGMMQMLLL-KNP 396 (802)
T ss_dssp ------------------SSSSHHHHHHHHHHTTTCCEEECCCCCE--EECCCCSHHHHHHHHHHHHHHHHHHHHH-SCT
T ss_pred ------------------CCcchHHHHHHHHHHcCCeEEEecCCEE--EecCCCCHHHHHHHHHHHHccHHHHHHH-hCc
Confidence 5789999999999999999999977654 8999999999999999999999999995 577
Q ss_pred ccccccCCCCChhhhHHhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH-HHHHHHHHHHHhcC
Q 039678 772 ICYGCKEGKIKFLERFAYINTTIYPFTSIPLLAYCLLPAICLLTDKFIMPEMSAFSGLLLVALFV-SFFASGILELRWSG 850 (1015)
Q Consensus 772 l~~g~~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~LltG~~i~p~~s~~~~~~fl~lfl-s~~~~~~Le~rw~g 850 (1015)
++ .+++++.||++|+...++++.+++.++++++|++++++|..++......+..+++..++ .+.+.. ..+.+
T Consensus 397 l~----~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l~~~~~~~---~~~~~ 469 (802)
T 4hg6_A 397 LF----RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAVSFLVQN---ALFAR 469 (802)
T ss_dssp TS----CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHHHH---HHHTT
T ss_pred cc----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHHHHHHHH---HHhcC
Confidence 76 46799999999999999999999999999999999999988877644333322222221 122111 12222
Q ss_pred cccchhcccchhhhhhhHHHHHHHHHHHHHH-HHcCCCCCceeCcCCCCCcccccccccccchhhHHHHHHHHHHHHHHH
Q 039678 851 VTIEEWWRNEQFWVIGGISSHLFAVFQGLAK-ILTKNDTIFTVTFKLFDDKEDKELYNFKWTALLIPPTTVLIINLVGIV 929 (1015)
Q Consensus 851 ~si~~wWrneqfW~I~~~sa~l~av~~allk-~L~g~~~~F~VTpK~~~~~~~~~ly~f~ws~l~iP~~~LlllnLiaiv 929 (1015)
.. -.|| ++.++.+ ..++ .+.+++. .+++++.+|.||+|+...+.. + + + .+++|+++++++++++++
T Consensus 470 ~r-~~~~-~~l~~~~----~~~~-~~~a~l~~l~~~~~~~f~VT~Kg~~~~~~---~-~-~-~~~~p~~~~~~l~~~~~~ 536 (802)
T 4hg6_A 470 QR-WPLV-SEVYEVA----QAPY-LARAIVTTLLRPRSARFAVTAKDETLSEN---Y-I-S-PIYRPLLFTFLLCLSGVL 536 (802)
T ss_dssp TS-CTTH-HHHHHHH----HHHH-HHHHHHHHHHSTTCCCCCCCCCCCCCSSC---C-B-C-TTCHHHHHHHHHHHHHHH
T ss_pred cH-HHHH-HHHHHHH----HHHH-HHHHHHHHHhCCCCCcceECCCCcccccc---c-h-h-hHHHHHHHHHHHHHHHHH
Confidence 21 1122 2222222 1122 2344443 356788999999999764332 1 2 2 578899999999999999
Q ss_pred HHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 039678 930 AGITDAINTGYEAMRPLIGKLFFVFWVISHLYPFLKGLM 968 (1015)
Q Consensus 930 ~Gi~~~i~~~~~~w~~l~g~lf~~~Wvi~~l~Pfl~gL~ 968 (1015)
+|+++.....+ +..+.+++++|+++|++...-++.
T Consensus 537 ~~~~~~~~~~~----~~~~~~~~~~w~~~~l~~l~~~~~ 571 (802)
T 4hg6_A 537 ATLVRWVAFPG----DRSVLLVVGGWAVLNVLLVGFALR 571 (802)
T ss_dssp HHHHHHHHCGG----GHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCC----ccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999875433 345678999999999998887765
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=2.1e-43 Score=315.69 Aligned_cols=84 Identities=77% Similarity=1.476 Sum_probs=82.0
Q ss_pred CCCCCCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccccCCCCcCCCCCccccc
Q 039678 26 PKPWKSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRIKGSPRVEGDADEEDID 105 (1015)
Q Consensus 26 ~~~~~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kgsp~v~gd~~e~~~~ 105 (1015)
+|||+++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||+|+|
T Consensus 8 ~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~d 87 (93)
T 1weo_A 8 PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDID 87 (93)
T ss_dssp SSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCSC
T ss_pred CCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCccccccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 039678 106 DIEH 109 (1015)
Q Consensus 106 ~~~~ 109 (1015)
|+++
T Consensus 88 D~~~ 91 (93)
T 1weo_A 88 SGPS 91 (93)
T ss_dssp CCCS
T ss_pred cccc
Confidence 9774
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.54 E-value=4.4e-14 Score=167.54 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=99.5
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCC
Q 039678 300 PNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPR 379 (1015)
Q Consensus 300 ~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR 379 (1015)
+...|.|+|+|||+| |+ ..+..|+.|+++.+||. .+.|+|+|||+++-|.+.+.+
T Consensus 89 ~~~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~-------------------- 143 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVRE-------------------- 143 (625)
T ss_dssp -CCCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHT--------------------
T ss_pred cccCCcEEEEEecCC---cH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHHH--------------------
Confidence 356899999999999 75 89999999999999986 799999999998743221110
Q ss_pred CcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccC
Q 039678 380 APEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGR 459 (1015)
Q Consensus 380 ~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~ 459 (1015)
+.
T Consensus 144 -----------------------------------------~~------------------------------------- 145 (625)
T 2z86_A 144 -----------------------------------------FE------------------------------------- 145 (625)
T ss_dssp -----------------------------------------TT-------------------------------------
T ss_pred -----------------------------------------hh-------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhc-CCCCCc
Q 039678 460 EGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLM-DPQTGK 538 (1015)
Q Consensus 460 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~-Dp~~g~ 538 (1015)
.-+++.|+.+++ ..++||+|+|.+++. +.++||+++|+|+++ .|++|.+++.+|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~-~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMAP-NPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEEE-CTTHHHHHHHHHHHCT----
T ss_pred ---------hcCCeEEEEeCC----CCcchhHHHHHHHHh----CCcCEEEEECCCCCC-CHHHHHHHHHHHhcCC----
Confidence 002477887654 445799999999996 689999999999995 8999999999885 56
Q ss_pred ceEEEecCccccCC
Q 039678 539 RVCYVQFPQRFDGI 552 (1015)
Q Consensus 539 ~va~VQ~PQ~F~ni 552 (1015)
.++.|+..+.+.+.
T Consensus 204 ~~~~~g~~~~~~~~ 217 (625)
T 2z86_A 204 NVALIGPRKYIDTS 217 (625)
T ss_dssp TEEEECCEEEECCT
T ss_pred ceEEEEeeeeccCc
Confidence 68888877666543
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.50 E-value=1.5e-13 Score=157.75 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=92.3
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCch-hhhhhhhHHHhhhhhhhhhhhcCCCC
Q 039678 300 PNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLL-SFESLSETADFARKWVPFCKKYSIEP 378 (1015)
Q Consensus 300 ~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~-T~~al~Eaa~FA~~WvPFCkk~~iep 378 (1015)
++++|.|.|+|||+| |+...+.+||.|+++..||.....|+|.|||+++- |.+.|.+
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~------------------- 82 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES------------------- 82 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHH-------------------
T ss_pred CcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHH-------------------
Confidence 457999999999999 88789999999999999997668999999999862 3322211
Q ss_pred CCcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheecc
Q 039678 379 RAPEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLG 458 (1015)
Q Consensus 379 R~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~ 458 (1015)
+++
T Consensus 83 ------------------------------------------~~~----------------------------------- 85 (472)
T 1xhb_A 83 ------------------------------------------YVK----------------------------------- 85 (472)
T ss_dssp ------------------------------------------HHH-----------------------------------
T ss_pred ------------------------------------------HHH-----------------------------------
Confidence 100
Q ss_pred CCCCCCCCCCCCC-cEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhc-CC
Q 039678 459 REGGHDAEGNELP-NLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLM-DP 534 (1015)
Q Consensus 459 ~~g~~d~~~~~lP-~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~-Dp 534 (1015)
..| ++.++..+++.| +++|+|.+++. +.|+||+.+|+|..+ +|++|.+++..+. +|
T Consensus 86 ----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~~-~p~~L~~ll~~~~~~~ 143 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCEC-TAGWLEPLLARIKHDR 143 (472)
T ss_dssp ----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEEE-CTTCHHHHHHHHHHCT
T ss_pred ----------HCCCcEEEEECCCCCC-----hHHHHHHHHHh----ccCCeEEEECCCeEe-CccHHHHHHHHHHhCC
Confidence 123 477887776544 99999999997 689999999999995 8999999999875 44
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.44 E-value=6.2e-13 Score=157.42 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=91.5
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchh-hhhhhhHHHhhhhhhhhhhhcCCCCC
Q 039678 301 NMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLS-FESLSETADFARKWVPFCKKYSIEPR 379 (1015)
Q Consensus 301 ~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T-~~al~Eaa~FA~~WvPFCkk~~iepR 379 (1015)
+.+|.|.|+|||+| |+...+.+||.|+++..||...+.|+|.|||+++-| .+.|.+
T Consensus 109 ~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~-------------------- 165 (570)
T 2d7i_A 109 ETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLED-------------------- 165 (570)
T ss_dssp SSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHH--------------------
T ss_pred CCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHH--------------------
Confidence 56899999999999 877899999999999999965569999999998854 221111
Q ss_pred CcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccC
Q 039678 380 APEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGR 459 (1015)
Q Consensus 380 ~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~ 459 (1015)
+++
T Consensus 166 -----------------------------------------~~~------------------------------------ 168 (570)
T 2d7i_A 166 -----------------------------------------YMA------------------------------------ 168 (570)
T ss_dssp -----------------------------------------HHT------------------------------------
T ss_pred -----------------------------------------HHH------------------------------------
Confidence 110
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039678 460 EGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDP 534 (1015)
Q Consensus 460 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp 534 (1015)
..|++.++..+++. ++++|+|.+++. +.|+||+.||+|.++ +|++|.+++..+.+.
T Consensus 169 ---------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~fLD~D~~~-~p~~L~~ll~~l~~~ 224 (570)
T 2d7i_A 169 ---------LFPSVRILRTKKRE-----GLIRTRMLGASV----ATGDVITFLDSHCEA-NVNWLPPLLDRIARN 224 (570)
T ss_dssp ---------TSTTEEEEECSSCC-----CHHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCSHHHHHHHHHC
T ss_pred ---------hCCeEEEEECCCCC-----CHHHHHHHHHHh----cCCCEEEEEcCCccc-cccHHHHHHHHHHhC
Confidence 11457788776644 499999999997 689999999999996 899999999988543
No 6
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.43 E-value=8.2e-13 Score=136.12 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=86.2
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCc
Q 039678 302 MLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAP 381 (1015)
Q Consensus 302 ~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~P 381 (1015)
..|.|.|+||||| ++ ..+.+++.|+++.+|| .+.|+|.|||+++-|.+.+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~---------------------- 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD---------------------- 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH----------------------
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHH----------------------
Confidence 5789999999999 65 6889999999999998 689999999998854332221
Q ss_pred ccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCC
Q 039678 382 EMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREG 461 (1015)
Q Consensus 382 e~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g 461 (1015)
|.+
T Consensus 55 -----------------------------~~~------------------------------------------------ 57 (240)
T 3bcv_A 55 -----------------------------YAA------------------------------------------------ 57 (240)
T ss_dssp -----------------------------HHH------------------------------------------------
T ss_pred -----------------------------HHh------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039678 462 GHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDP 534 (1015)
Q Consensus 462 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp 534 (1015)
..|++.|+.. + ..++++|.|.+++. ++|+||+.+|+|.++ .|++|.+.+..+.++
T Consensus 58 -------~~~~i~~i~~-~-----n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~~-~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 58 -------QYPNIKVIHK-K-----NAGLGMACNSGLDV----ATGEYVAFCDSDDYV-DSDMYMTMYNVAQKY 112 (240)
T ss_dssp -------HCSSEEEEEC-C-----CCCHHHHHHHHHHH----CCSSEEEECCTTCCC-CTTHHHHHHHHHHHH
T ss_pred -------hCCCEEEEEC-C-----CCChHHHHHHHHHH----cCCCEEEEECCCCcC-CHHHHHHHHHHHHhc
Confidence 0124666753 2 34599999999996 689999999999995 899999999988653
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.41 E-value=1.5e-13 Score=143.22 Aligned_cols=124 Identities=12% Similarity=0.185 Sum_probs=94.0
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccc
Q 039678 304 APVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEM 383 (1015)
Q Consensus 304 P~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~ 383 (1015)
|.|.|+|||+| ++ ..+.+|+.|+++++|| .+.++|.|||+++-|.+.+.+. +
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~~---~------------------- 52 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRPF---L------------------- 52 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGGG---G-------------------
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHHH---h-------------------
Confidence 67999999999 65 7899999999999998 6899999999987543322210 0
Q ss_pred ccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCC
Q 039678 384 YFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGH 463 (1015)
Q Consensus 384 yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~ 463 (1015)
.
T Consensus 53 --------------------------------------------------------------------------~----- 53 (255)
T 1qg8_A 53 --------------------------------------------------------------------------N----- 53 (255)
T ss_dssp --------------------------------------------------------------------------G-----
T ss_pred --------------------------------------------------------------------------h-----
Confidence 0
Q ss_pred CCCCCCCCcEEEEecCCCCCC----CCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhc-CCCCCc
Q 039678 464 DAEGNELPNLVYVSREKRPAF----PHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLM-DPQTGK 538 (1015)
Q Consensus 464 d~~~~~lP~lvYvsRekrPg~----~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~-Dp~~g~ 538 (1015)
-|++.|+..+.. +. ...++++|+|.+++. ++|+||+.+|+|.++ .|++|.+++..|. +|
T Consensus 54 ------~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~-~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 54 ------DNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIY-MPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp ------STTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEE-CTTHHHHHHHHHHHCT----
T ss_pred ------cCCEEEEecccc-cccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCcc-ChHHHHHHHHHHHhCC----
Confidence 024677776510 00 123599999999996 699999999999996 7999999998875 56
Q ss_pred ceEEEecCcccc
Q 039678 539 RVCYVQFPQRFD 550 (1015)
Q Consensus 539 ~va~VQ~PQ~F~ 550 (1015)
++++|.....+.
T Consensus 118 ~~~~v~~~~~~~ 129 (255)
T 1qg8_A 118 EKAVIYSASKTY 129 (255)
T ss_dssp TCCEEEEEEEEE
T ss_pred CceEEEeceEEE
Confidence 677887766654
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.37 E-value=2.6e-12 Score=149.01 Aligned_cols=113 Identities=14% Similarity=0.078 Sum_probs=90.6
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCC
Q 039678 300 PNMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPR 379 (1015)
Q Consensus 300 ~~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR 379 (1015)
+.++|.|.|+|||+| |+...+.+||.|+++..||.....|+|.|||+++-|.+.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH----------------------
Confidence 457999999999999 8865899999999999998656799999999987432100
Q ss_pred CcccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccC
Q 039678 380 APEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGR 459 (1015)
Q Consensus 380 ~Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~ 459 (1015)
+.
T Consensus 117 -----------------------------------------~~------------------------------------- 118 (501)
T 2ffu_A 117 -----------------------------------------LG------------------------------------- 118 (501)
T ss_dssp -----------------------------------------GG-------------------------------------
T ss_pred -----------------------------------------Hh-------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039678 460 EGGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDP 534 (1015)
Q Consensus 460 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp 534 (1015)
..|++.|+..+++. ++++|+|.+++. +.|+||+.+|+|..+ +|++|.+++..+.+.
T Consensus 119 ---------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~flD~D~~~-~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRRE-----GLMRSRVRGADA----AQAKVLTFLDSHCEC-NEHWLEPLLERVAED 174 (501)
T ss_dssp ---------GBTTEEEEECSSCC-----HHHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCHHHHHHHHHHC
T ss_pred ---------cCCCEEEEECCCCc-----CHHHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhC
Confidence 12357788777644 399999999997 689999999999995 799999999888643
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.31 E-value=6.1e-12 Score=149.19 Aligned_cols=125 Identities=21% Similarity=0.268 Sum_probs=95.6
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCC
Q 039678 301 NMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRA 380 (1015)
Q Consensus 301 ~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~ 380 (1015)
...|.|.|+||||| ++ ..+..+|.|+++.+|| .+.|+|.|||+++-|.+.+.+
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~--------------------- 424 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE--------------------- 424 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH---------------------
T ss_pred ccCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECcCChhHHHHHHH---------------------
Confidence 45789999999999 64 6889999999999998 589999999998754432221
Q ss_pred cccccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCC
Q 039678 381 PEMYFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGRE 460 (1015)
Q Consensus 381 Pe~yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~ 460 (1015)
+. .
T Consensus 425 ----------------------------------------~~---~---------------------------------- 427 (625)
T 2z86_A 425 ----------------------------------------HY---A---------------------------------- 427 (625)
T ss_dssp ----------------------------------------HH---T----------------------------------
T ss_pred ----------------------------------------HH---h----------------------------------
Confidence 00 0
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhh-cCCCCCcc
Q 039678 461 GGHDAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFL-MDPQTGKR 539 (1015)
Q Consensus 461 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff-~Dp~~g~~ 539 (1015)
..|++.+++ ++ ..++++|+|.+++. ++|+||+.+|+|.++ .|++|.+.+..| .+| +
T Consensus 428 --------~~~~i~~~~-~~-----n~G~~~a~n~g~~~----a~g~~i~~ld~D~~~-~~~~l~~~~~~~~~~~----~ 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QK-----NKGIGSASNTAVRL----CRGFYIGQLDSDDFL-EPDAVELCLDEFRKDL----S 484 (625)
T ss_dssp --------TCTTEEEEE-EC-----CCCHHHHHHHHHHH----CCSSEEEECCTTCEE-CTTHHHHHHHHHHHCT----T
T ss_pred --------hCCcEEEEe-CC-----CCCHHHHHHHHHHh----cCCCEEEEECCCccc-ChhHHHHHHHHHHhCC----C
Confidence 013466775 33 23599999999996 689999999999995 899999999877 567 6
Q ss_pred eEEEecCccccCC
Q 039678 540 VCYVQFPQRFDGI 552 (1015)
Q Consensus 540 va~VQ~PQ~F~ni 552 (1015)
+++|.....+.+.
T Consensus 485 ~~~v~~~~~~~~~ 497 (625)
T 2z86_A 485 LACVYTTNRNIDR 497 (625)
T ss_dssp CSEEEEEEEEECT
T ss_pred eeEEEeeeEEECC
Confidence 7788876665443
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.99 E-value=1.8e-09 Score=118.82 Aligned_cols=50 Identities=12% Similarity=0.001 Sum_probs=42.5
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhh
Q 039678 302 MLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFES 356 (1015)
Q Consensus 302 ~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~a 356 (1015)
.-|.|.|+||||| |+ ..+..+|.|++++.|| ....|+|.|||+++-|.+.
T Consensus 46 ~~~~vSViIp~yN---~~-~~l~~~l~sl~~q~~~-~~~eiivVDdgS~D~t~~~ 95 (329)
T 3ckj_A 46 AGRTISVVLPALD---EE-DTIGSVIDSISPLVDG-LVDELIVLDSGSTDDTEIR 95 (329)
T ss_dssp TTCCEEEEEEESS---CT-TTHHHHHHHHGGGBTT-TBSEEEEEECSCCSSHHHH
T ss_pred cCCcEEEEEeeCC---CH-HHHHHHHHHHHHhhCC-CCcEEEEEeCCCCchHHHH
Confidence 4688999999999 65 5789999999999998 4578999999999865443
No 11
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=98.95 E-value=2.4e-09 Score=129.18 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=40.5
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCc-EEEEecCCCCc
Q 039678 301 NMLAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKI-SCYISDDGASL 351 (1015)
Q Consensus 301 ~~lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl-~~yvsDDG~s~ 351 (1015)
..-|.|.|+||||| ++ ..+.++|.|+++..|+.++. .|+|.|||+++
T Consensus 177 ~~~pkVSVVIptYN---~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD 224 (657)
T 4fix_A 177 PGTANIAVGIPTFN---RP-ADCVNALRELTADPLVDQVIGAVIVPDQGERK 224 (657)
T ss_dssp CSCCCEEEECCBSS---CH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSC
T ss_pred CCCCeEEEEEEecC---CH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCC
Confidence 34689999999998 54 68999999999999976666 89999999875
No 12
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.90 E-value=1.5e-10 Score=140.48 Aligned_cols=110 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchhhhhhhhHHHhhhhhhhhhhhcCCCCCCccc
Q 039678 304 APVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLSFESLSETADFARKWVPFCKKYSIEPRAPEM 383 (1015)
Q Consensus 304 P~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T~~al~Eaa~FA~~WvPFCkk~~iepR~Pe~ 383 (1015)
|.|.|+|||+| ++ ..+..+|.|+++++|| .+.|+|.|||+++-|.+.+.+. + ++
T Consensus 2 p~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~---~-------~~---------- 55 (729)
T 3l7i_A 2 NKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEA---I-------KD---------- 55 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEcCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHHH---H-------Hh----------
Confidence 67999999999 65 6889999999999999 6789999999988554433221 0 00
Q ss_pred ccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCcchhheeccCCCCC
Q 039678 384 YFSQKVDYLKDKVQPAFVKERRAMKREYEEFKVRMNALVAKSRMIPQDGWIMQDGTPWPGNNTQDHPGMIQVFLGREGGH 463 (1015)
Q Consensus 384 yFs~~~d~~~~~~~~~f~~err~mkr~Yee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~~~~~~dHp~iiqv~~~~~g~~ 463 (1015)
|+
T Consensus 56 -----------------------------------------------------------------~~------------- 57 (729)
T 3l7i_A 56 -----------------------------------------------------------------YD------------- 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------------------CC-------------
Confidence 00
Q ss_pred CCCCCCCCcEEEEecCCCCCCCCCCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039678 464 DAEGNELPNLVYVSREKRPAFPHNKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMDP 534 (1015)
Q Consensus 464 d~~~~~lP~lvYvsRekrPg~~hh~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~Dp 534 (1015)
+++.|+..++. .++++|.|.+++. ++|+||+.+|+|.++ .|++|.+.+..+.++
T Consensus 58 -------~~i~~i~~~~n-----~G~~~arN~gi~~----A~gdyI~flD~Dd~~-~p~~l~~l~~~l~~~ 111 (729)
T 3l7i_A 58 -------KNIRFIDLDEN-----SGHAHARNIALEE----VETPYFMFLDADDEL-ASYAITFYLEKFNNT 111 (729)
T ss_dssp -----------------------------------------------------------------------
T ss_pred -------CCEEEEECCCC-----CCHHHHHHHHHHh----ccCCEEEEECCCCCC-ChhHHHHHHHHhcCC
Confidence 13555555442 3489999999986 689999999999996 899999999888754
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.62 E-value=5.4e-08 Score=106.34 Aligned_cols=54 Identities=11% Similarity=-0.080 Sum_probs=40.7
Q ss_pred cchHHHHHHHHhCCcEEEEecCCCCcc----------cccCCCCHHHHHHHhHHhhccchhHhh
Q 039678 713 TEDILTGFKLHSRGWRSIYCMPKRSAF----------KGSAPINLSDRLNQALRWALGSVEIFF 766 (1015)
Q Consensus 713 TED~~tg~rL~~~GwrsvY~~~~~~af----------~G~aP~tl~~~l~QR~RWA~G~lQil~ 766 (1015)
.||.++..||+.+||++.+.++....+ ....|+.+..+.+||.||+.+.+..+.
T Consensus 201 ~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~~ 264 (287)
T 2fy7_A 201 GEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLT 264 (287)
T ss_dssp CHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGCC
T ss_pred cchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccCc
Confidence 499999999999999887443211111 245789999999999999999998764
No 14
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=98.16 E-value=5.9e-06 Score=93.82 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=41.1
Q ss_pred CCchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhh-cCCCCCcceEEEec
Q 039678 487 NKRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFL-MDPQTGKRVCYVQF 545 (1015)
Q Consensus 487 h~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff-~Dp~~g~~va~VQ~ 545 (1015)
.+|++|+|.+++. +.|+||+.+|+|....+|++|.+.+..+ .+| ++.+|..
T Consensus 165 ~G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p----~~d~v~G 216 (387)
T 3f1y_A 165 HGKGDAMWRALSV----TRGDLVLYIDADTRDFRPQLAYGVLGPVLEVP----GVRFVKA 216 (387)
T ss_dssp CSHHHHHHHHTTT----CCSSEEEECCTTCSSCCTHHHHTTHHHHHHST----TCCEEEE
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCC----CceEEEE
Confidence 4599999999985 6899999999999823799999999876 456 4556654
No 15
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=97.89 E-value=9.8e-05 Score=77.98 Aligned_cols=46 Identities=4% Similarity=0.058 Sum_probs=38.7
Q ss_pred chhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHHHhhcC-----CCCCcceEEE
Q 039678 489 RAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLMD-----PQTGKRVCYV 543 (1015)
Q Consensus 489 KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~D-----p~~g~~va~V 543 (1015)
.|.|+|.+++. +.|+||+.||.|.++ .+++|.+.+.++.. | +++.|
T Consensus 62 ~a~a~N~Gi~~----A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~----~vg~v 112 (249)
T 2nxv_A 62 GFSWHKQMLPR----CKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADP----KWLVA 112 (249)
T ss_dssp TTTHHHHHGGG----CCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCT----TEEEE
T ss_pred HHHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCC----CeeEE
Confidence 37899999986 689999999999996 79999999988863 7 56665
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.73 E-value=0.0018 Score=57.56 Aligned_cols=53 Identities=30% Similarity=0.877 Sum_probs=43.6
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
....|.||-+.+-. +.-.|.+| .||.-.|+.|+..-.++++..||.|+++|..
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCcc--cccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34589999997633 33458889 9999999999987777788999999999974
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=96.17 E-value=0.0095 Score=66.76 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=37.6
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCc
Q 039678 303 LAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASL 351 (1015)
Q Consensus 303 lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~ 351 (1015)
|+.+-|+|.||| -| . +..++.|+++...+.++..++|+|||...
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 355778999998 76 6 99999999999977778889999999764
No 18
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=95.94 E-value=0.027 Score=64.26 Aligned_cols=42 Identities=17% Similarity=0.002 Sum_probs=34.4
Q ss_pred CCchhhhHHHH----HHhccccCceEEEEecCCCCCCchHHHHHHHHhhc
Q 039678 487 NKRAGAMNALV----RVSGVLTNSSFILNLDCDHYVNNSKAVREAMCFLM 532 (1015)
Q Consensus 487 h~KAGALNall----rvSavltngp~Il~lDcD~~~~~~~~Lr~amcff~ 532 (1015)
.+|++|+|+++ +. .+|++|+.+|||..-.+|+.+.+.+..+.
T Consensus 74 ~GkG~Al~~G~~~Al~~----a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEE----TQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSHHHHHHHHHHHHHHH----CCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 46999999999 54 68999999999985226899988877653
No 19
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=95.09 E-value=0.075 Score=60.59 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.8
Q ss_pred CchhhhHHHHHHhccccCceEEEEecCCCCCCchHHHHHHH
Q 039678 488 KRAGAMNALVRVSGVLTNSSFILNLDCDHYVNNSKAVREAM 528 (1015)
Q Consensus 488 ~KAGALNallrvSavltngp~Il~lDcD~~~~~~~~Lr~am 528 (1015)
+|..||-+++..+. ..++++|+.+|||-+ .|..+.+..
T Consensus 144 GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~--iP~~v~~~~ 181 (394)
T 2zu9_A 144 GKGEGMLVGLLLAK-AIGAEYVGFVDADNY--IPGAVNEYV 181 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCSEEEECCSCBS--CHHHHHHHH
T ss_pred ChHHHHHHHHHHHh-hCCCCEEEEEeCCCC--CHHHHHHHH
Confidence 69999999998631 118999999999997 477776544
No 20
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=92.42 E-value=0.12 Score=58.16 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=32.7
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCCchh
Q 039678 303 LAPVDIFVTTVDPMKEPPLVTANTILSVLAMDYPVDKISCYISDDGASLLS 353 (1015)
Q Consensus 303 lP~VDvfV~T~dP~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~s~~T 353 (1015)
+..+.|+||+|| |.. +++-++++.-|. ...+.|.|||+.+-|
T Consensus 52 ~~klSIVVPvYN---Ee~----~lLesVl~qi~~--d~eIIlVdDGS~D~s 93 (391)
T 2wvl_A 52 LEQTAIVVPTRN---ERL----KLLEGVLSGIPH--EALILVASNSSPDRF 93 (391)
T ss_dssp HTTEEEEEEESS---CCH----HHHHHHHHTSCT--TSEEEEEECCCHHHH
T ss_pred HhceEEEEeccC---cHH----HHHHHHHhcCCC--CceEEEEECCCCCCh
Confidence 566999999999 885 357777777664 577999999997754
No 21
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.53 E-value=0.67 Score=41.20 Aligned_cols=56 Identities=23% Similarity=0.487 Sum_probs=40.7
Q ss_pred CCCCCccccccCccccccCCCCeeeccCCCC---CccchhhhHHHHhh-CCCCCCCCcccccc
Q 039678 30 KSLDGQVCEICGDEIGKMANGDLFLACEECG---FPVCRPCYEYERRE-GTQLCPQCKTRYKR 88 (1015)
Q Consensus 30 ~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~---fpvCr~Cyeyer~e-G~~~Cp~Ckt~ykr 88 (1015)
.......|.||-++. ++++.+..+| .|. --+.+.|.+-=.+. ++..||.|+++|.-
T Consensus 11 ~~~~~~~C~IC~~~~--~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEG--DDESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCC--CSSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccc--cCCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 344567999998764 3445567788 663 67999999665554 44799999999963
No 22
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=88.49 E-value=0.42 Score=40.27 Aligned_cols=51 Identities=31% Similarity=0.562 Sum_probs=37.2
Q ss_pred CCCccccccCccccccCCCCeeeccCCCCC---ccchhhhHHHHhh-CCCCCCCCccccc
Q 039678 32 LDGQVCEICGDEIGKMANGDLFLACEECGF---PVCRPCYEYERRE-GTQLCPQCKTRYK 87 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~~f~ac~ec~f---pvCr~Cyeyer~e-G~~~Cp~Ckt~yk 87 (1015)
..+..|.||-++ .++++..|| .|.= -+=+.|.+-=.++ |+..||.||++|.
T Consensus 4 ~~~~~CrIC~~~----~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEE----LGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEE----CSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecC----CCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 356699999776 234567888 6743 4557788665554 6899999999996
No 23
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.04 E-value=0.55 Score=39.07 Aligned_cols=55 Identities=27% Similarity=0.732 Sum_probs=39.6
Q ss_pred CCCccccccCccccccC-CCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 32 LDGQVCEICGDEIGKMA-NGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~-~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
.....|.||-+...... .++..+.- .|+-..|+.|.+--.+. +..||-|++++.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34568999999865443 34444443 78999999999655444 6899999998753
No 24
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.60 E-value=0.34 Score=43.08 Aligned_cols=62 Identities=23% Similarity=0.517 Sum_probs=45.7
Q ss_pred ccccCceEEEeccCCCCCCCCCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHh
Q 039678 10 GSHNRNELVLIHNHEEPKPWKSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERR 73 (1015)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~ 73 (1015)
||.-.|||.-++.-+...+-.+-+...|..|+...|+- ++--+.|..|...||+.|-.+..+
T Consensus 1 ~~~~~~eL~elrrkgak~~s~~~~~r~CarC~~~LG~l--~~~g~~C~~Ck~rVC~~Crv~~~~ 62 (76)
T 2csz_A 1 GSSGSSGLLEIKRKGAKRGSQHYSDRTCARCQESLGRL--SPKTNTCRGCNHLVCRDCRIQESN 62 (76)
T ss_dssp CCCCCCCCCCCCCCCSCSCCTTCCCCBCSSSCCBCSSS--CTTTSEETTTTEECCTTSEEECST
T ss_pred CchhHHHHHHHHHccccCcCcCCCccchhhhCcccccc--ccCCCcCcccChhhcccccccCCC
Confidence 45558898877764433333456777999999999986 334467999999999999876543
No 25
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=86.38 E-value=0.37 Score=40.55 Aligned_cols=55 Identities=27% Similarity=0.732 Sum_probs=40.1
Q ss_pred CCCccccccCccccccC-CCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 32 LDGQVCEICGDEIGKMA-NGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~-~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
.....|.||-+...... +|+..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 35568999999865543 45544444 78999999999654444 4799999999853
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.03 E-value=0.64 Score=38.70 Aligned_cols=53 Identities=23% Similarity=0.555 Sum_probs=37.2
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
...|.||-+++..+.. ..++.- .||--.|+.|.+--...++..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~-~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS-LKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSS-CCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCc-cCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4589999884333322 122222 6788999999976656677899999999964
No 27
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.82 E-value=2.3 Score=36.50 Aligned_cols=53 Identities=17% Similarity=0.405 Sum_probs=36.9
Q ss_pred CCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 32 LDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
.....|.||-+.+.. ++..+.- .|+--.|+.|.+--.+ .+..||-|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYAL---GESVRQL-PCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCT---TSCEEEC-TTSCEEETTTTHHHHT-TTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccC---CCCEEEe-CCCCeecHHHHHHHHH-cCCcCcCcCCccCCc
Confidence 356699999988643 3333222 4788899999965443 447999999998643
No 28
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=84.70 E-value=0.37 Score=39.53 Aligned_cols=53 Identities=28% Similarity=0.757 Sum_probs=38.7
Q ss_pred CccccccCccccccC-CCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMA-NGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~-~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
...|.||-+...... +++..+.- .|+--.|+.|.+--.+. +..||-|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 458999999865443 34444444 78999999999655444 6899999999853
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=83.91 E-value=0.74 Score=39.62 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=37.7
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
..-.|.||.+.. . ++.+. .|+.-.|+.|.+--.+.|+..||.|+++..
T Consensus 7 ~~~~C~IC~~~~-~----~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELM-K----DPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCC-S----SEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCccccc-c----CCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 355899998753 2 24332 689999999998888888899999999884
No 30
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.95 E-value=1.4 Score=35.15 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=35.1
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
+...|.||-++... |+..+....|+--.|+.|.+--. ..+..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELED---GEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHHHTT-TTCCSCSSSCCCS
T ss_pred CCCcCccCCccccC---CCceEECCCCCCcccHHHHHHHH-HcCCcCcCCCCEe
Confidence 35589999988643 34333343588889999995433 3468999999875
No 31
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=82.67 E-value=0.81 Score=45.29 Aligned_cols=48 Identities=27% Similarity=0.697 Sum_probs=37.9
Q ss_pred ccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
..|.||-+... ++ +.+..|+--.|+.|.+--.+.++..||-|+.++..
T Consensus 55 ~~C~IC~~~~~-----~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLK-----NT-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCS-----SE-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhh-----Cc-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 38999987743 13 23337899999999988888888999999999853
No 32
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=81.50 E-value=1.4 Score=34.99 Aligned_cols=50 Identities=30% Similarity=0.600 Sum_probs=35.6
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
+...|.||-+.+... ++. +....|+-..|+.|.+--.+.. ..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~~--~~~-~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS--RVV-AHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTT--TSC-EEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcCC--CcC-eEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 456899999986432 222 2233578899999997665555 8999999875
No 33
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.32 E-value=1.2 Score=37.71 Aligned_cols=49 Identities=29% Similarity=0.647 Sum_probs=36.4
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHh--hCCCCCCCCcccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERR--EGTQLCPQCKTRYKR 88 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~--eG~~~Cp~Ckt~ykr 88 (1015)
....|.||-+... ++.+ . .|+--.|+.|.+--.+ .++..||.|++++..
T Consensus 19 ~~~~C~IC~~~~~-----~~~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS-----SEEE-C-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC-----CeEE-c-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3458999998753 2322 2 6899999999976655 356799999999864
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=79.74 E-value=1.4 Score=41.59 Aligned_cols=47 Identities=23% Similarity=0.547 Sum_probs=35.8
Q ss_pred ccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
..|.||-+..- ++.+. .|+--.|+.|.+--.+.+...||.|++++..
T Consensus 53 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITT--VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-----SEEEC--TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-----CcEEe--eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999988754 23222 6899999999977666666799999999954
No 35
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=79.65 E-value=2.1 Score=35.60 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=34.5
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
...|.||-+.... ..... .|+-..|+.|.+--.+ .+..||-|+++....
T Consensus 5 ~~~C~IC~~~~~~---~~~~~---~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 5 AERCPICLEDPSN---YSMAL---PCLHAFCYVCITRWIR-QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCSSCCSCCCS---CEEET---TTTEEESTTHHHHHHH-HSCSTTTTCCCCCCE
T ss_pred CCCCeeCCccccC---CcEec---CCCCeeHHHHHHHHHh-CcCcCcCCChhhHhh
Confidence 4589999988531 11223 4788899999965443 448999999998644
No 36
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=79.44 E-value=1.8 Score=39.84 Aligned_cols=59 Identities=22% Similarity=0.434 Sum_probs=40.5
Q ss_pred CCccccccCccccccC-----------CCCeeeccCCCCCccchhhhHHHHh----hCCCCCCCCccccccccC
Q 039678 33 DGQVCEICGDEIGKMA-----------NGDLFLACEECGFPVCRPCYEYERR----EGTQLCPQCKTRYKRIKG 91 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~-----------~g~~f~ac~ec~fpvCr~Cyeyer~----eG~~~Cp~Ckt~ykr~kg 91 (1015)
....|.||-+.+...+ +-...+..-.|+=-.|+.|.+--.+ +.+..||-|++.|...+|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3458999988865432 1112333456888999999975554 456799999999975543
No 37
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.03 E-value=2.5 Score=35.16 Aligned_cols=49 Identities=22% Similarity=0.492 Sum_probs=37.2
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
....|.||.+.... +.+ -.|+--.|+.|.+--.+.++..||.|+++++.
T Consensus 14 ~~~~C~IC~~~~~~-----p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS-----PKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESS-----CCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcC-----eeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 34689999887531 222 26888899999987776778899999999864
No 38
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.66 E-value=2 Score=37.37 Aligned_cols=53 Identities=23% Similarity=0.442 Sum_probs=37.3
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhC--CCCCCCCcccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREG--TQLCPQCKTRYKR 88 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG--~~~Cp~Ckt~ykr 88 (1015)
....|.||-+....+ ....+.- .|+-..|+.|.+--.+.. ...||.|+++++.
T Consensus 14 ~~~~C~IC~~~~~~~--~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEE--QLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTT--SSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCcccccc--CCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345899999875432 2213333 689999999997665543 5899999999853
No 39
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=76.20 E-value=3 Score=34.79 Aligned_cols=53 Identities=17% Similarity=0.346 Sum_probs=36.4
Q ss_pred CCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 32 LDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
.....|.||-+.+.. ++..+.- .|+--.|+.|..--.+. +..||-|+++....
T Consensus 12 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEE---GEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCS---SSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccC---CCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 345689999987642 3333333 57888899999544443 46799999988643
No 40
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=75.30 E-value=2.9 Score=43.90 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=37.3
Q ss_pred CCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 32 LDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
...-.|.||.+- +. ++.+. .||.-.||.|-+--.+++...||.|+++..
T Consensus 206 ~~~~~c~i~~~~-~~----dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSB-CS----SEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCH-hc----CCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 345689999864 22 35443 489999999998887777677999999884
No 41
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=74.81 E-value=2 Score=43.86 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=36.8
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
..-.|.||++- +. ++.+. .||.-.||.|-+--.+.++..||.|++++.
T Consensus 105 ~~f~CPI~~el-m~----DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCcccc-CC----CCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 34589999764 44 36666 489999999998777765457999999884
No 42
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.53 E-value=2.9 Score=35.89 Aligned_cols=49 Identities=27% Similarity=0.816 Sum_probs=35.4
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhh-----CCCCCCCCcccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERRE-----GTQLCPQCKTRYKR 88 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~e-----G~~~Cp~Ckt~ykr 88 (1015)
....|.||-+.... + +.. .|+-..|+.|.+--.+. +...||.|++++..
T Consensus 18 ~~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ-----P-LSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS-----C-BCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC-----c-eeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34589999987522 2 222 58889999999654433 57899999999853
No 43
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.21 E-value=2.9 Score=35.86 Aligned_cols=48 Identities=25% Similarity=0.705 Sum_probs=35.1
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhh-----CCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERRE-----GTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~e-----G~~~Cp~Ckt~ykr 88 (1015)
...|.||-+.... +. .. .|+-..|+.|.+.-.+. +...||.|++++..
T Consensus 19 ~~~C~IC~~~~~~-----p~-~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKE-----PV-SA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSS-----CE-EC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCc-----ce-eC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4589999887532 21 23 57888999999765554 47899999999853
No 44
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=73.76 E-value=2.5 Score=38.48 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=37.2
Q ss_pred ccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
..|.||-+..- .-+.|-.|+--.|+.|..--.+.....||.|++++.
T Consensus 23 ~~C~IC~~~~~------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLR------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCS------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCcccc------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 47999998753 234556899999999997666666679999999984
No 45
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.54 E-value=7.5 Score=32.82 Aligned_cols=49 Identities=20% Similarity=0.465 Sum_probs=35.2
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
...|.||-+..-. +.+ ...|+--.|+.|.+.-.+. +..||.|+++++..
T Consensus 15 ~~~C~IC~~~~~~-----p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID-----ATT-ITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS-----CEE-CSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC-----cCE-ECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcc
Confidence 4589999876422 222 2367888899999766544 68999999998653
No 46
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.38 E-value=2.5 Score=36.02 Aligned_cols=52 Identities=15% Similarity=0.441 Sum_probs=36.6
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
....|.||-+++.. ++..+.- .|+--.|+.|..--.+. +..||-|+.++...
T Consensus 22 ~~~~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFES---RQLLRVL-PCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCB---TCEEEEE-TTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCC---CCeEEEE-CCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 45689999988643 4433323 47888999999654443 57999999988543
No 47
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=70.84 E-value=2.3 Score=39.66 Aligned_cols=50 Identities=28% Similarity=0.778 Sum_probs=36.0
Q ss_pred ccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRIK 90 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~k 90 (1015)
+.|.+|+-.|-. .|. .++| .=-.|-+|++.-.+++.+.||.|+.+..|.+
T Consensus 2 hfC~~C~~Pi~i--ygR-mIPC---kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 2 HFCDKCGLPIKV--YGR-MIPC---KHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp CBCTTTCSBCSE--EEE-EETT---CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred eecCccCCCeEE--Eee-eccc---cccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 357777766433 222 2444 4467999998778899999999999998763
No 48
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=69.75 E-value=0.79 Score=45.82 Aligned_cols=51 Identities=24% Similarity=0.503 Sum_probs=42.8
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTR 85 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ 85 (1015)
+...|.+|+...|+- +..-+.|..|...||+.|-.|-++++.=.|--|-..
T Consensus 67 ~~~~C~~C~~~fg~l--~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLL--LNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGC--SSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccc--cCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 567999999998876 334688999999999999988888888888888654
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=69.23 E-value=1.8 Score=40.14 Aligned_cols=48 Identities=23% Similarity=0.690 Sum_probs=36.5
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
.-.|.||-+..- ++.+. .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 15 ~~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 458999997743 23222 6899999999976666777899999999863
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.48 E-value=6.7 Score=33.14 Aligned_cols=52 Identities=19% Similarity=0.500 Sum_probs=36.7
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
....|.||-+.+.. ++..+.. .|+-..|+.|..--.+. +..||-|+.++...
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKP---RDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCS---SSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCC---CCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 35689999998543 3333333 47888999999654444 46999999988543
No 51
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=66.96 E-value=3.7 Score=38.29 Aligned_cols=48 Identities=21% Similarity=0.492 Sum_probs=36.6
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
.-.|.||.+..- ++ +.. .|+--.|+.|.+.-.+.++..||.|+.+...
T Consensus 18 ~~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChhhc-----Ce-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 348999997653 23 233 6899999999987777776799999988853
No 52
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.68 E-value=2.5 Score=35.46 Aligned_cols=48 Identities=27% Similarity=0.695 Sum_probs=34.8
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
....|.||-+.... ...+ |+-..|+.|.+- .-..+..||-|+++....
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~---CgH~fc~~Ci~~-~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LILP---CAHSFCQKCIDK-WSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEET---TTEEECHHHHHH-SSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-----cccC---CCCcccHHHHHH-HHHCcCcCCCcCCcccCC
Confidence 35689999887422 4444 577789999954 334679999999998643
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.03 E-value=5.3 Score=34.94 Aligned_cols=56 Identities=18% Similarity=0.470 Sum_probs=37.9
Q ss_pred CCCccccccCcccccc--------CCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 32 LDGQVCEICGDEIGKM--------ANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~--------~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
.....|.||-+++... ++++..+.-..|+=--|+.|.+-=.+ .++.||-|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 3456799999887542 23443333337888899999954433 34799999999854
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=65.92 E-value=4.7 Score=36.22 Aligned_cols=48 Identities=19% Similarity=0.399 Sum_probs=34.6
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
...|.||-+... ++.+. ..|+--.|+.|.+--.+ .+..||.|++++..
T Consensus 22 ~~~C~IC~~~~~-----~p~~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN-----IAMII-PQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS-----SEEEC-TTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC-----CcCEE-CCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 348999988753 13222 36899999999965544 45899999999853
No 55
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=64.92 E-value=4.8 Score=39.55 Aligned_cols=47 Identities=21% Similarity=0.554 Sum_probs=35.7
Q ss_pred ccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
..|.||-+..- ++.+ . .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 79 ~~C~IC~~~~~-----~pv~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT-T-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhc-----CCEE-c-CCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 47999988642 2333 2 6888899999977777776799999999853
No 56
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=64.02 E-value=8.4 Score=34.11 Aligned_cols=47 Identities=9% Similarity=-0.142 Sum_probs=35.3
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
..-.|.||++- +.+ +.+. .||.-.||.|-+--.+ ++..||.|++++.
T Consensus 13 ~~~~CpI~~~~-m~d----PV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTL-MTD----PVRL--PSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSB-CSS----EEEC--TTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred hheECcccCch-hcC----CeEC--CCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 35589999763 432 4443 3899999999977766 4689999999884
No 57
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=63.96 E-value=4.3 Score=37.33 Aligned_cols=47 Identities=9% Similarity=-0.137 Sum_probs=35.3
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
..-.|.||++- +.| +.+. .||.-.||.|-+--.+ ++..||.|++++.
T Consensus 28 ~~~~CpI~~~~-m~d----PV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTL-MTD----PVRL--PSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSB-CSS----EEEE--TTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred HhhCCcCccCc-ccC----CeEC--CCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 35589999753 432 5443 3899999999977765 5789999999884
No 58
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.28 E-value=12 Score=32.24 Aligned_cols=46 Identities=22% Similarity=0.428 Sum_probs=34.1
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
...|.||-+..-. +.+ -.|+--.|+.|..--.+ .+..||.|++++.
T Consensus 15 ~~~C~IC~~~~~~-----p~~--~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVV--TKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-----EEE--CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-----eeE--ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 4589999887521 333 26788889999966554 4689999999984
No 59
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=62.85 E-value=5.1 Score=35.74 Aligned_cols=50 Identities=26% Similarity=0.585 Sum_probs=35.7
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
....|.||-+.... |+..+.. .|+--.|+.|..--. ..+..||-|+.+..
T Consensus 39 ~~~~C~IC~~~~~~---~~~~~~l-~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVK---GDVATEL-PCHHYFHKPCVSIWL-QKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCT---TCEEEEE-TTTEEEEHHHHHHHH-TTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcC---CCcEEec-CCCChHHHHHHHHHH-HcCCcCcCcCccCC
Confidence 45589999987643 4544444 478889999985443 45679999998763
No 60
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=62.79 E-value=3.6 Score=40.17 Aligned_cols=38 Identities=26% Similarity=0.709 Sum_probs=30.6
Q ss_pred CCCCccccccCcccccc-CCCCeeeccCCCCCccchhhhHHH
Q 039678 31 SLDGQVCEICGDEIGKM-ANGDLFLACEECGFPVCRPCYEYE 71 (1015)
Q Consensus 31 ~~~~~~c~~c~~~vg~~-~~g~~f~ac~ec~fpvCr~Cyeye 71 (1015)
+.+...|.+|+...|+- ..| ..|..|...||+.|-.+.
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g---~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSAS---VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCE---EECTTTCCEEETTSEEEC
T ss_pred cCCCccccccCCCcccccCCC---CCCCCCCcccccccCCcc
Confidence 35677999999999754 334 789999999999998654
No 61
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.77 E-value=6.7 Score=33.02 Aligned_cols=50 Identities=22% Similarity=0.423 Sum_probs=35.0
Q ss_pred CCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 31 SLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 31 ~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
......|.||-+.... -... .|+--.|+.|.+--.+. +..||-|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~---~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH----PVSL---PCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSS----EEEE---TTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCC----CEEc---cCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 3456689999887521 1233 47888999999643443 3899999999863
No 62
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.24 E-value=6.5 Score=35.75 Aligned_cols=47 Identities=26% Similarity=0.590 Sum_probs=33.6
Q ss_pred ccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhh--CCCCCCCCcccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERRE--GTQLCPQCKTRYKR 88 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~e--G~~~Cp~Ckt~ykr 88 (1015)
..|.||-+..- ++.+ . .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 47999988652 1222 2 68889999999765543 44689999998864
No 63
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=60.23 E-value=5.5 Score=38.23 Aligned_cols=45 Identities=22% Similarity=0.561 Sum_probs=32.1
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
.|.||-+..- ++ |.. .|+--.|+.|..--. +.+..||.|+++.+.
T Consensus 55 ~C~iC~~~~~-----~~-~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFI-----EA-VTL-NCAHSFCSYCINEWM-KRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCS-----SE-EEE-TTSCEEEHHHHHHHT-TTCSBCTTTCCBCCC
T ss_pred CCcccCcccC-----Cc-eEC-CCCCCccHHHHHHHH-HcCCcCCCCCCcCCC
Confidence 6999988742 12 222 478889999985443 345789999998853
No 64
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=59.60 E-value=6.9 Score=36.17 Aligned_cols=48 Identities=23% Similarity=0.493 Sum_probs=36.7
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
...|.||.+..- ++.. . .|+--.|+.|.+--.+.++..||.|+.++..
T Consensus 23 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 348999987752 2333 3 6899999999977777767899999999854
No 65
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=59.51 E-value=13 Score=31.70 Aligned_cols=50 Identities=28% Similarity=0.611 Sum_probs=35.5
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhh-CCCCCCCCcccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERRE-GTQLCPQCKTRYKR 88 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~e-G~~~Cp~Ckt~ykr 88 (1015)
....|.||-+..- ++.+ -..|+--.|+.|.+--.+. +...||.|++++.+
T Consensus 14 ~~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT-----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh-----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3458999977642 2322 3348999999999776654 45799999997654
No 66
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=59.42 E-value=6.3 Score=36.02 Aligned_cols=48 Identities=23% Similarity=0.577 Sum_probs=34.9
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
.-.|.||.+..- ++.+ ...|+--.|+.|..--.+. +..||.|++++..
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATT-IIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS-----SEEE-ETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChHHh-----CcCE-eCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 448999988752 2333 2368889999999665554 4899999999853
No 67
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=59.27 E-value=2.8 Score=43.54 Aligned_cols=29 Identities=34% Similarity=0.717 Sum_probs=22.6
Q ss_pred CCCccccccCcccccc----CCCCeeeccCCCCCccchhhhHH
Q 039678 32 LDGQVCEICGDEIGKM----ANGDLFLACEECGFPVCRPCYEY 70 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~----~~g~~f~ac~ec~fpvCr~Cyey 70 (1015)
.+.-+|++||+.|+-+ .||+ ++|++|++.
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~g~----------~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLNGK----------PVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEETTE----------EECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeCCc----------EEChhhhcc
Confidence 4466899999998875 3565 789999964
No 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=58.28 E-value=5.6 Score=39.33 Aligned_cols=48 Identities=21% Similarity=0.492 Sum_probs=37.8
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
.-.|.||.+..- ++ +.+ .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 18 ~~~C~IC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 18 KYECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCChhhc-----Cc-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 348999998642 23 346 7999999999988777777799999988753
No 69
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=58.26 E-value=5.2 Score=34.37 Aligned_cols=29 Identities=31% Similarity=0.577 Sum_probs=23.0
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCcc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPV 63 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpv 63 (1015)
-.-+|.-||.++.+..+ .-+-|.||++.|
T Consensus 20 v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK--EVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCCSS--SCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecCCC--CceECCCCCcEE
Confidence 44689999999988753 338899999876
No 70
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=57.22 E-value=6.6 Score=34.63 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=34.3
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhh-CCCCCCCCccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERRE-GTQLCPQCKTRYK 87 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~e-G~~~Cp~Ckt~yk 87 (1015)
.-.|.||.+..- ++.+ ...|+--.|+.|.+--.++ +...||.|++++.
T Consensus 13 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECS-----SCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhc-----CceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 458999997542 2322 2238999999999765543 4579999999873
No 71
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.17 E-value=10 Score=31.00 Aligned_cols=43 Identities=28% Similarity=0.686 Sum_probs=31.4
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhh--CCCCCCCC
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERRE--GTQLCPQC 82 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~e--G~~~Cp~C 82 (1015)
....|.||-+..- ++.+. .|+--.|+.|.+--.+. ++..||.|
T Consensus 19 ~~~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS-----SCEEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC-----CeEEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3458999988753 23332 68999999999776654 56789988
No 72
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.07 E-value=6.9 Score=36.41 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=33.1
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
...|.||-+... ++.+.. .|+--.|+.|..--.+ ..||.|++++.
T Consensus 22 ~~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 358999987642 243333 6899999999965444 78999999984
No 73
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.07 E-value=12 Score=31.72 Aligned_cols=45 Identities=24% Similarity=0.693 Sum_probs=32.4
Q ss_pred CCCccccccCccccccCCCCeeeccCCCCCc-cchhhhHHHHhhCCCCCCCCcccccc
Q 039678 32 LDGQVCEICGDEIGKMANGDLFLACEECGFP-VCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fp-vCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
.+...|.||-+.- .--.|++| +=- .|..|.+. .+.||-|+++...
T Consensus 13 ~~~~~C~IC~~~~----~~~v~~pC---gH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT----VNWVLLPC---RHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC----CCCEETTT---TBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC----CCEEEECC---CChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 4566899998752 22356776 444 89999962 4899999998864
No 74
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=56.93 E-value=5.5 Score=49.05 Aligned_cols=74 Identities=28% Similarity=0.599 Sum_probs=48.7
Q ss_pred eEEEeccCCC-CCCCCCCCCccccccCccccccCC---CCeeeccCCCC--------------------CccchhhhH-H
Q 039678 16 ELVLIHNHEE-PKPWKSLDGQVCEICGDEIGKMAN---GDLFLACEECG--------------------FPVCRPCYE-Y 70 (1015)
Q Consensus 16 ~~~~~~~~~~-~~~~~~~~~~~c~~c~~~vg~~~~---g~~f~ac~ec~--------------------fpvCr~Cye-y 70 (1015)
.|.+.++++. ....-..+-.+|.-|=.++---.| +-+|+-|..|| ||.|..|.. |
T Consensus 92 ~F~I~~s~~~~~~~~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY 171 (761)
T 3vth_A 92 DFKIVGSKEDGGFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREY 171 (761)
T ss_dssp SEEECCCBCCSCCCCCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHH
T ss_pred CceeeecCCCCcccccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHh
Confidence 3545455432 122334566799999988753222 55899999998 999999973 4
Q ss_pred H----Hh--hCCCCCCCCccccccc
Q 039678 71 E----RR--EGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 71 e----r~--eG~~~Cp~Ckt~ykr~ 89 (1015)
+ || ----+||.|+=++.-.
T Consensus 172 ~dp~~RRfhAqp~aC~~CGP~l~l~ 196 (761)
T 3vth_A 172 HDPHDRRFHAQPVACFDCGPSLSFV 196 (761)
T ss_dssp TCTTSTTTTCTTCCCTTTSCCEEEE
T ss_pred cCcccccccCCCCcCCccCCeeEEe
Confidence 3 33 1225899999888543
No 75
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=56.48 E-value=3.9 Score=34.84 Aligned_cols=48 Identities=29% Similarity=0.772 Sum_probs=34.2
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhh------CCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERRE------GTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~e------G~~~Cp~Ckt~ykr 88 (1015)
...|.||-+..-. +.+ . .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 12 ~~~C~IC~~~~~~-----p~~-l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTE-----PLS-L-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSS-----CCC-C-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCC-----eeE-C-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4589999887421 222 2 68889999999644333 36899999999853
No 76
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=56.12 E-value=7.1 Score=36.21 Aligned_cols=55 Identities=27% Similarity=0.730 Sum_probs=40.5
Q ss_pred CCCccccccCcccccc-CCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 32 LDGQVCEICGDEIGKM-ANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~-~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
.+...|.||-+.+... +.+...+.+ .|+-..|..|.+--.+. +..||.|++.+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 3556899998886543 345555555 89999999999655544 4799999999853
No 77
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=55.36 E-value=7.9 Score=35.40 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=34.7
Q ss_pred CccccccCccccccCCCCeeeccCCCC-CccchhhhHHHHhhCCCCCCCCccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECG-FPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~-fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
.-.|.||.+ ++.| +.+. .|+ .-.||.|-+--.++ +..||.|++++.
T Consensus 22 ~~~CpI~~~-~m~d----PV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMST-LMCD----PVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCS-BCSS----EEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCccc-cccC----CeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 458999975 3443 4443 478 99999999777665 689999999884
No 78
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=52.11 E-value=4.2 Score=41.89 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=21.6
Q ss_pred CCCccccccCccccccCCCCeeeccCCCCCccchhhhH
Q 039678 32 LDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYE 69 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cye 69 (1015)
....+|++||+.|+-. +=++|++|++
T Consensus 161 ~~~~~C~~CGE~~~~~------------g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ------------DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG------------GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC------------CCcCCccccC
Confidence 5677999999998865 4589999984
No 79
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=52.04 E-value=12 Score=34.85 Aligned_cols=54 Identities=20% Similarity=0.384 Sum_probs=35.6
Q ss_pred CCccccccCcccccc----------CCCC-eeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 33 DGQVCEICGDEIGKM----------ANGD-LFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~----------~~g~-~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
....|.||-+.+... ..|+ .-+.--.|+-.-++.|..-=. ..+..||-|+.+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH-TTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHH-HcCCcCcCCCCcce
Confidence 456899998886543 1222 122223788999999984433 45789999999964
No 80
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=51.64 E-value=9.2 Score=40.58 Aligned_cols=48 Identities=27% Similarity=0.767 Sum_probs=38.7
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHH-HhhCCCCCCCCccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYE-RREGTQLCPQCKTRYK 87 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeye-r~eG~~~Cp~Ckt~yk 87 (1015)
-..|++|-+-|.. | ..|..|+-..=+.|++-- +..++..||.|+++..
T Consensus 180 i~~C~iC~~iv~~---g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSS---C---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhC---C---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4589999999885 3 779889999999999654 3445679999999874
No 81
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=50.49 E-value=6.8 Score=36.32 Aligned_cols=55 Identities=27% Similarity=0.730 Sum_probs=39.7
Q ss_pred CCccccccCcccccc-CCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 33 DGQVCEICGDEIGKM-ANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~-~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
+...|.||-+..... .+|+..+.- .|+---|+.|.+--.++ +..||.|+.++...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh-CCCCCCCCCcCccc
Confidence 445899999885443 245544544 78999999999655554 46999999998643
No 82
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=49.04 E-value=8.9 Score=32.10 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=34.3
Q ss_pred CCCCccccccCccccccCCCCeee--ccCCCCCc-cchhhhHHHHhhCCCCCCCCcccccc
Q 039678 31 SLDGQVCEICGDEIGKMANGDLFL--ACEECGFP-VCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 31 ~~~~~~c~~c~~~vg~~~~g~~f~--ac~ec~fp-vCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
......|.||-++..- -.|+ +| |-- .|..|.+--. +.+..||-|+.+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~----~~~~~~pC---gH~~~C~~C~~~~~-~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPKN----GCIVHGKT---GHLMACFTCAKKLK-KRNKPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCSC----EEEEETTE---EEEEECHHHHHHHH-HTTCCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCCC----EEEECCCC---CChhhHHHHHHHHH-HcCCcCCCcCcchhc
Confidence 3455689999886321 1455 55 656 6999997554 456889999998753
No 83
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=46.42 E-value=14 Score=42.14 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=33.2
Q ss_pred ccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
..|.||-+..-. -...+ |+=-.|+.|..--.+.+...||-|+++...
T Consensus 333 ~~C~ICle~~~~----pv~lp---CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 333 QLCKICAENDKD----VKIEP---CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SBCTTTSSSBCC----EEEET---TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCccCcCCCC----eEEeC---CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 589999776411 12344 555569999965555477999999998864
No 84
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=46.23 E-value=3.5 Score=39.04 Aligned_cols=30 Identities=20% Similarity=0.603 Sum_probs=20.4
Q ss_pred eeccCCCCCccchhhhHHHHhhCCC-CCCCCccccccc
Q 039678 53 FLACEECGFPVCRPCYEYERREGTQ-LCPQCKTRYKRI 89 (1015)
Q Consensus 53 f~ac~ec~fpvCr~Cyeyer~eG~~-~Cp~Ckt~ykr~ 89 (1015)
..-|.+|++. ++..+-.. .||.|+.+-.+.
T Consensus 73 ~~~C~~CG~~-------~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 73 ELECKDCSHV-------FKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp EEECSSSSCE-------ECSCCSTTCCCSSSSSCCCEE
T ss_pred eEEcCCCCCE-------EeCCCCCCCcCccccCCCcEE
Confidence 4568777743 34344556 899999997665
No 85
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=44.82 E-value=7.5 Score=33.87 Aligned_cols=57 Identities=30% Similarity=0.626 Sum_probs=42.6
Q ss_pred CCCCCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHH-HhhCCCCCCCCccc
Q 039678 27 KPWKSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYE-RREGTQLCPQCKTR 85 (1015)
Q Consensus 27 ~~~~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeye-r~eG~~~Cp~Ckt~ 85 (1015)
-|....+...|.+|++. -.++++..+-|..|.-..=..||.-. .-+|.=.||.|...
T Consensus 9 ~~~~~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 9 MQSLIDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp -CCCCCSSCSCSSSCCC--CCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred cccCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 44556677899999874 23456788999999888888898654 44788899999753
No 86
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=44.31 E-value=2.6 Score=36.85 Aligned_cols=43 Identities=23% Similarity=0.556 Sum_probs=31.6
Q ss_pred eeccCCCCCccchhhhHHHHhhCCCCCCCCccccccccCCCCcCCCCC
Q 039678 53 FLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRIKGSPRVEGDAD 100 (1015)
Q Consensus 53 f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kgsp~v~gd~~ 100 (1015)
..+| |+|+.=.+|+..+|.-.|+.|+..|--..|-|..--||.
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (70)
T 2js4_A 8 ILVC-----PVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEA 50 (70)
T ss_dssp CCBC-----TTTCCBEEEETTTTEEEETTTTEEEEEETTEECCCGGGS
T ss_pred heEC-----CCCCCcCEEeCCCCEEEcCCCCceecCCCCeeeeChhhc
Confidence 5566 555554556666788899999999998888887665543
No 87
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.09 E-value=22 Score=28.69 Aligned_cols=45 Identities=24% Similarity=0.513 Sum_probs=31.8
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRI 89 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~ 89 (1015)
...|.||-+..-. -... .|+--.|+.|.+- ....||.|+++....
T Consensus 6 ~~~C~IC~~~~~~----p~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKC----PKLL---PCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBC----CSCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCC----eEEc---CCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 4579999886431 1223 4677789999743 678999999988654
No 88
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=43.58 E-value=8.6 Score=32.72 Aligned_cols=51 Identities=24% Similarity=0.569 Sum_probs=36.8
Q ss_pred CCCCCCCccccccCccccccCCCCeeeccCCCCCccchhhhHH---HHhhCCCCCCCCccc
Q 039678 28 PWKSLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEY---ERREGTQLCPQCKTR 85 (1015)
Q Consensus 28 ~~~~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyey---er~eG~~~Cp~Ckt~ 85 (1015)
+++..+...|.+|++. | ..+.|..|.-..=..|..- +.-+|.=.||.|...
T Consensus 2 ~~~~~~~~~C~vC~~~------g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 2 AMAQKNEDECAVCRDG------G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCCSCCCSBSSSSCC------S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CcCCCCCCCCccCCCC------C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 3455677899999963 3 5788999976666677752 234688899999754
No 89
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=43.53 E-value=11 Score=42.27 Aligned_cols=35 Identities=23% Similarity=0.636 Sum_probs=29.0
Q ss_pred CCCccccccCccc-cccCCCCeeeccCCCCCccchhhhH
Q 039678 32 LDGQVCEICGDEI-GKMANGDLFLACEECGFPVCRPCYE 69 (1015)
Q Consensus 32 ~~~~~c~~c~~~v-g~~~~g~~f~ac~ec~fpvCr~Cye 69 (1015)
.....|..|+..+ |+...| ..|..|++.+|+.|..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg---~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQG---YRCYRCRAPAHKECLG 390 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCE---EEETTTCCEECGGGGG
T ss_pred CCCCCCccccchhceeCCCC---CCCCCCcCccchhhhh
Confidence 4567999999997 675555 5699999999999994
No 90
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.42 E-value=13 Score=32.54 Aligned_cols=48 Identities=27% Similarity=0.767 Sum_probs=34.8
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHH-HhhCCCCCCCCccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYE-RREGTQLCPQCKTRYK 87 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeye-r~eG~~~Cp~Ckt~yk 87 (1015)
-..|.||-+.|.. | ..|.+|+-..=..|..-= +..++..||.|++...
T Consensus 15 i~~C~IC~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3489999999873 3 357777777777887433 3445589999998874
No 91
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.81 E-value=15 Score=31.49 Aligned_cols=43 Identities=33% Similarity=0.765 Sum_probs=30.1
Q ss_pred CccccccCccccccCCCCeeeccCCCCCc-cchhhhHHHHhhCCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFP-VCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fp-vCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
...|.||-+..- --.+++ |+-- .|+.|.+ ....||-|+++...
T Consensus 25 ~~~C~IC~~~~~----~~~~~p---CgH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVP---CGHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSS---SCCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEec---CCCHHHHHHHhh-----CCCCCccCCceecC
Confidence 347999987631 123445 5767 7999983 24899999998854
No 92
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.18 E-value=21 Score=33.48 Aligned_cols=24 Identities=17% Similarity=0.016 Sum_probs=16.7
Q ss_pred ccchhhhHHHHhhCC-CCCCCCccccc
Q 039678 62 PVCRPCYEYERREGT-QLCPQCKTRYK 87 (1015)
Q Consensus 62 pvCr~Cyeyer~eG~-~~Cp~Ckt~yk 87 (1015)
|.|+.||.. +-+. +.|-.|+.+-.
T Consensus 56 ~yC~~cy~~--~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 56 ILCRNDYIR--LFGNSGAGGSGGHMGS 80 (122)
T ss_dssp EECHHHHHH--HHCCCCSSSCSSCCSC
T ss_pred eecHHHHHH--HcCCCCccccCCCCcC
Confidence 459999843 3343 38999998774
No 93
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=41.04 E-value=8 Score=37.61 Aligned_cols=46 Identities=22% Similarity=0.551 Sum_probs=36.3
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
.-.|.||.+-.- ++ |.. .|+--.|+.|.+--.+.++..||.|+.+.
T Consensus 31 ~~~C~IC~~~~~-----~p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLR-----RP-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhhc-----Cc-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 348999987642 23 334 89999999999887788888999999875
No 94
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=40.88 E-value=5.4 Score=39.04 Aligned_cols=14 Identities=21% Similarity=0.607 Sum_probs=10.6
Q ss_pred CCCCCCCccccccc
Q 039678 76 TQLCPQCKTRYKRI 89 (1015)
Q Consensus 76 ~~~Cp~Ckt~ykr~ 89 (1015)
...||.|+.+--..
T Consensus 107 ~~~CP~Cgs~~~~i 120 (139)
T 3a43_A 107 FLACPKCGSHDFEV 120 (139)
T ss_dssp GCSCSSSSCCCEEE
T ss_pred CCcCccccCCccEE
Confidence 57899999885443
No 95
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.31 E-value=20 Score=31.15 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=25.8
Q ss_pred CCCCCCCCCccccccCccccc----cCCCCee----eccCCCCCccc
Q 039678 26 PKPWKSLDGQVCEICGDEIGK----MANGDLF----LACEECGFPVC 64 (1015)
Q Consensus 26 ~~~~~~~~~~~c~~c~~~vg~----~~~g~~f----~ac~ec~fpvC 64 (1015)
.+|.+......|..|+..|.. .+.|..+ ..|.+|.-++=
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~ 53 (80)
T 2dj7_A 7 GKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT 53 (80)
T ss_dssp CCCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS
T ss_pred CCCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC
Confidence 456666677899999999863 2345444 35777765553
No 96
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=40.03 E-value=12 Score=44.36 Aligned_cols=36 Identities=19% Similarity=0.564 Sum_probs=30.1
Q ss_pred CCCccccccCccc-cccCCCCeeeccCCCCCccchhhhHH
Q 039678 32 LDGQVCEICGDEI-GKMANGDLFLACEECGFPVCRPCYEY 70 (1015)
Q Consensus 32 ~~~~~c~~c~~~v-g~~~~g~~f~ac~ec~fpvCr~Cyey 70 (1015)
.....|..|++-+ |+.-.| ..|..|+|.||+-|.+.
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQG---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCE---EEETTTCCEECSGGGGG
T ss_pred CCCcccccccccccccccCC---cCCCCCCCccchhhhhc
Confidence 4567999999997 776555 78999999999999955
No 97
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.45 E-value=45 Score=26.26 Aligned_cols=43 Identities=23% Similarity=0.686 Sum_probs=30.5
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhh--CCCCCCCC
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERRE--GTQLCPQC 82 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~e--G~~~Cp~C 82 (1015)
....|.||-+..-. . ... .|+--.|+.|.+--.++ ++..||.|
T Consensus 14 ~~~~C~IC~~~~~~---p-~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---P-VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---C-CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---c-EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34589999987532 1 122 57888899999665443 67899988
No 98
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=39.36 E-value=3.2 Score=36.07 Aligned_cols=43 Identities=16% Similarity=0.491 Sum_probs=32.0
Q ss_pred eeccCCCCCccchhhhHHHHhhCCCCCCCCccccccccCCCCcCCCCC
Q 039678 53 FLACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRIKGSPRVEGDAD 100 (1015)
Q Consensus 53 f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kgsp~v~gd~~ 100 (1015)
..+| |+|+-=.+|.+.+|.-.|+.|+..|--..|-|..--||.
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (68)
T 2hf1_A 8 ILVC-----PLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEA 50 (68)
T ss_dssp ECBC-----TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGGGC
T ss_pred heEC-----CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChhhc
Confidence 5677 555544556666788899999999999888887666643
No 99
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.33 E-value=11 Score=32.54 Aligned_cols=52 Identities=23% Similarity=0.611 Sum_probs=36.0
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHH---HhhCCCCCCCCcccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYE---RREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeye---r~eG~~~Cp~Ckt~ykr 88 (1015)
+...|.+|+.. .+|+..+.|..|.--.=-.|.... ..+|.-.||.|...-++
T Consensus 17 ~~~~C~~C~~~----~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKP----DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBC----CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCC----CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 45589999865 368889999988544334555433 22477899999887554
No 100
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=38.95 E-value=18 Score=33.87 Aligned_cols=46 Identities=28% Similarity=0.594 Sum_probs=26.6
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCcccc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
.|..|+..+. +.|..|..= =+-|.|+.||.. +......|..|+++-
T Consensus 31 ~C~~C~~~L~--~~~~~~~~~--~g~~yC~~~y~~-~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 31 SCDLCGCRLG--EVGRRLYYK--LGRKLCRRDYLR-LFGQDGLCASCDKRI 76 (131)
T ss_dssp BCTTTCCBCS--STTCCEEEE--TTEEECHHHHHH-HHCCCEECTTTCCEE
T ss_pred ccCcCCCccc--cCCCeEEEE--CCEEeecCchhh-hCCCccChhhcCCcc
Confidence 6777776643 223333321 135689999943 222224899999876
No 101
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=38.64 E-value=10 Score=46.69 Aligned_cols=60 Identities=37% Similarity=0.794 Sum_probs=43.1
Q ss_pred CCCCCccccccCccccccCC---CCeeeccCCCC--------------------Cccchhhh-HHH----Hh--hCCCCC
Q 039678 30 KSLDGQVCEICGDEIGKMAN---GDLFLACEECG--------------------FPVCRPCY-EYE----RR--EGTQLC 79 (1015)
Q Consensus 30 ~~~~~~~c~~c~~~vg~~~~---g~~f~ac~ec~--------------------fpvCr~Cy-eye----r~--eG~~~C 79 (1015)
-..+-.+|.-|=.++---.| +-+|+-|..|| ||.|..|. ||+ || ----+|
T Consensus 102 i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC 181 (772)
T 4g9i_A 102 IPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCC
Confidence 34567799999988643332 55899999995 99999996 444 33 112499
Q ss_pred CCCccccccc
Q 039678 80 PQCKTRYKRI 89 (1015)
Q Consensus 80 p~Ckt~ykr~ 89 (1015)
|.|+=++.-.
T Consensus 182 ~~CGP~l~l~ 191 (772)
T 4g9i_A 182 PVCGPSYRLY 191 (772)
T ss_dssp TTTSCCEEEE
T ss_pred ccCCceEEEE
Confidence 9999887543
No 102
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=38.06 E-value=13 Score=32.43 Aligned_cols=25 Identities=24% Similarity=0.805 Sum_probs=14.4
Q ss_pred ccccccCccccccCCCCeeeccCCCCC
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGF 61 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~f 61 (1015)
-+|.-||.++.+..+ + -+.|.+|+.
T Consensus 29 Y~C~~CG~~~e~~~~-d-~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-D-AVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-S-TTCCSSSCC
T ss_pred EECCCCCCcceeCCC-C-CccCCCCCc
Confidence 367777777666522 2 235666665
No 103
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=36.27 E-value=14 Score=30.32 Aligned_cols=31 Identities=23% Similarity=0.710 Sum_probs=25.6
Q ss_pred CccccccCccccccCCCCeeeccCCC-CCccchhhhHH
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEEC-GFPVCRPCYEY 70 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec-~fpvCr~Cyey 70 (1015)
+-.|..|+.+|| .-.-|.+| .|-+|..||.-
T Consensus 6 ~~~Cd~C~~~ig------~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVE------TRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEES------SEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCc------ceEEcCCCCCchhHHHHHhC
Confidence 457999999863 35889999 89999999965
No 104
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=35.50 E-value=20 Score=29.83 Aligned_cols=47 Identities=19% Similarity=0.481 Sum_probs=32.2
Q ss_pred CccccccCccccccCCCCeee--ccCCCCCc-cchhhhHHHHhhCCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFL--ACEECGFP-VCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~--ac~ec~fp-vCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
...|.||-|.-- .-.++ +| |-- .|..|.+--.+ .+..||-|+.+.+.
T Consensus 7 ~~~C~IC~~~~~----~~~~~~~pC---gH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPR----DGNIIHGRT---GHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBS----CEEEEETTE---EEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCC----CeEEEecCC---CCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 458999988521 11344 65 554 79999975544 45899999998753
No 105
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.12 E-value=21 Score=31.67 Aligned_cols=50 Identities=22% Similarity=0.527 Sum_probs=34.6
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHH----HhhCC---CCCCC--Ccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYE----RREGT---QLCPQ--CKTRY 86 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeye----r~eG~---~~Cp~--Ckt~y 86 (1015)
+...|.||-+++. +..++.-..|+=.-|+.|..-- .++|. -.||+ |+..+
T Consensus 4 ~~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 3458999988753 2344444468889999997644 23664 47999 99874
No 106
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=35.10 E-value=44 Score=33.31 Aligned_cols=53 Identities=25% Similarity=0.592 Sum_probs=33.3
Q ss_pred CCCCccccccCccccc----cCCCCee----eccCCCCCc------------cchhhhHHHHhhCCCCCCCCcccc
Q 039678 31 SLDGQVCEICGDEIGK----MANGDLF----LACEECGFP------------VCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 31 ~~~~~~c~~c~~~vg~----~~~g~~f----~ac~ec~fp------------vCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
......|..|+..|.- .+.|..+ ..|.+|.-+ .|+.||. ++-+ ..|..|+++-
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~--~~f~-~kC~~C~~~I 129 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF--KRFG-TKCAACQLGI 129 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHH--HTTS-CCCTTTCCCC
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccc--cccc-cccccCCCcc
Confidence 3445799999998763 2355544 246777544 4888873 2223 6788888654
No 107
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=34.70 E-value=26 Score=31.27 Aligned_cols=23 Identities=22% Similarity=0.587 Sum_probs=16.0
Q ss_pred CccchhhhHHHHhhCCCCCCCCcccc
Q 039678 61 FPVCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 61 fpvCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
-+.|++||+ ++- ...|.+|+++-
T Consensus 54 ~~yC~~cy~--~~~-~~~C~~C~~~I 76 (101)
T 2cup_A 54 KILCNKCTT--RED-SPKCKGCFKAI 76 (101)
T ss_dssp EEECHHHHT--TCC-CCBCSSSCCBC
T ss_pred EEEChhHhh--hhc-CCccccCCCcc
Confidence 366899983 222 37899998876
No 108
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=33.30 E-value=5.2 Score=34.78 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=25.8
Q ss_pred hHHHHhhCCCCCCCCccccccccCCCCcCCCCCc
Q 039678 68 YEYERREGTQLCPQCKTRYKRIKGSPRVEGDADE 101 (1015)
Q Consensus 68 yeyer~eG~~~Cp~Ckt~ykr~kgsp~v~gd~~e 101 (1015)
.+|.+.+|.-.|+.|+..|--..|-|..--||..
T Consensus 18 L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (68)
T 2jr6_A 18 LEYHQDKQELWSRQAKLAYPIKDGIPYMLENEAR 51 (68)
T ss_dssp CEEETTTTEEEETTTTEEEEEETTEECCCTTTCE
T ss_pred CeEeCCCCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence 3444556778999999999999999877766533
No 109
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=33.12 E-value=27 Score=29.24 Aligned_cols=47 Identities=26% Similarity=0.691 Sum_probs=35.3
Q ss_pred CCCCccccccCccccccCCCCeeeccCCCCCccchhhhHH---HHhhCCCCCCCCcc
Q 039678 31 SLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEY---ERREGTQLCPQCKT 84 (1015)
Q Consensus 31 ~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyey---er~eG~~~Cp~Ckt 84 (1015)
..+...|.+|++ |...+.|..|.-.-=-.|..- +.-+|.=.||.|..
T Consensus 8 ~~~~~~C~vC~~-------~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQ-------GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSC-------CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCC-------CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 445668999997 236788999977767778765 24478899999974
No 110
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=33.02 E-value=5.8 Score=34.41 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=28.9
Q ss_pred ccchhhhHHHHhhCCCCCCCCccccccccCCCCcCCCCCc
Q 039678 62 PVCRPCYEYERREGTQLCPQCKTRYKRIKGSPRVEGDADE 101 (1015)
Q Consensus 62 pvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kgsp~v~gd~~e 101 (1015)
|+|+.=.+|...+|.-+|+.|+..|--..|-|..--||.+
T Consensus 14 P~ck~~L~~~~~~g~LvC~~c~~~YPI~dGIPvmL~~Ear 53 (67)
T 2jny_A 14 PKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDEAT 53 (67)
T ss_dssp TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCSSCCE
T ss_pred CCCCCcCeEeCCCCEEEcCCCCccccCCCCEeeeChhHhc
Confidence 4444434455557778999999999999999977766543
No 111
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=32.79 E-value=22 Score=30.32 Aligned_cols=42 Identities=33% Similarity=0.753 Sum_probs=30.1
Q ss_pred ccccccCccccccCCCCeeeccCCCCCc-cchhhhHHHHhhCCCCCCCCcccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFP-VCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fp-vCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
..|.||-+..- --.+.+ |+=- .|+.|..-- ..||-|+++...
T Consensus 25 ~~C~iC~~~~~----~~~~~p---CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNI----AIVFVP---CGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBC----CEEEET---TCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC----CEEEcC---CCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 47999987632 123555 5777 899998432 899999998864
No 112
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.10 E-value=36 Score=29.53 Aligned_cols=62 Identities=23% Similarity=0.570 Sum_probs=34.5
Q ss_pred CCCCCCccccccCccccc----cCCCCee----eccCCCCCccchhhhHHHHhhCCCCCCCCccccccccCCC
Q 039678 29 WKSLDGQVCEICGDEIGK----MANGDLF----LACEECGFPVCRPCYEYERREGTQLCPQCKTRYKRIKGSP 93 (1015)
Q Consensus 29 ~~~~~~~~c~~c~~~vg~----~~~g~~f----~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ykr~kgsp 93 (1015)
.+......|..|+..|.. .+.|..+ ..|.+|.-++=.-.|-.-.++|.- =|+.-|.+...+|
T Consensus 10 ~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~---yC~~~y~~~~~~~ 79 (82)
T 2co8_A 10 QEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHF---YCLQHLPQTDSGP 79 (82)
T ss_dssp CCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCC---EETTTCCCCCCCC
T ss_pred cCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEE---EChHHHHhhhcCC
Confidence 344556799999999853 2456554 235555554444343110245543 4556676665555
No 113
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=31.74 E-value=35 Score=31.80 Aligned_cols=51 Identities=20% Similarity=0.543 Sum_probs=38.8
Q ss_pred CccccccCcccc--ccCCCCeeeccCCCCCccchhhhHH------HHhhCCCCCCCCcc
Q 039678 34 GQVCEICGDEIG--KMANGDLFLACEECGFPVCRPCYEY------ERREGTQLCPQCKT 84 (1015)
Q Consensus 34 ~~~c~~c~~~vg--~~~~g~~f~ac~ec~fpvCr~Cyey------er~eG~~~Cp~Ckt 84 (1015)
..+|.+|.+.=. .+.+++.++.|..|+-..=..|..+ ..++++=.||.||+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 358999976533 3346678999999988877788854 35688999999984
No 114
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.42 E-value=14 Score=34.70 Aligned_cols=26 Identities=31% Similarity=0.862 Sum_probs=18.3
Q ss_pred ccCCCCCccchhhhHHHHhhCCCCCCCCcccc
Q 039678 55 ACEECGFPVCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 55 ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
.|.+|||..+ ++-.....||.||..-
T Consensus 69 ~C~~CG~~F~------~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFK------AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCC------CCSSCCSSCSSSCCCC
T ss_pred ChhhCcCeec------ccCCCCCCCcCCCCCc
Confidence 4999999861 2334558999998653
No 115
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=31.02 E-value=32 Score=29.46 Aligned_cols=46 Identities=28% Similarity=0.608 Sum_probs=35.2
Q ss_pred CCCccccccCccccccCCCCeeeccCCCCCccchhhhHHH---HhhCCCCCCCCcc
Q 039678 32 LDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYE---RREGTQLCPQCKT 84 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeye---r~eG~~~Cp~Ckt 84 (1015)
..+..|.+|++ |...+-|..|.-..=-.|..-- .-+|.=.||.|+.
T Consensus 10 ~~~~~C~vC~~-------~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGD-------GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSC-------CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCcCCCCC-------CCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 35567999985 3347889999988888998533 3378889999975
No 116
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=30.52 E-value=24 Score=39.37 Aligned_cols=43 Identities=30% Similarity=0.762 Sum_probs=31.0
Q ss_pred CccccccCccccccCCCCeeeccCCCCCc-cchhhhHHHHhhCCCCCCCCcccccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFP-VCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fp-vCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
...|.||-+..- .-.+++ |+-- .|+.|..-- ..||-|+++..+
T Consensus 295 ~~~C~IC~~~~~----~~v~lp---CgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIP---CGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC----CEEEET---TCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC----ceEEcC---CCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 358999988742 123555 5777 899998532 789999999864
No 117
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=30.43 E-value=19 Score=32.48 Aligned_cols=54 Identities=31% Similarity=0.692 Sum_probs=40.7
Q ss_pred CCCCccccccCccccccCCCCeeeccCCCCCccchhhhHHH-HhhCCCCCCCCcccc
Q 039678 31 SLDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYE-RREGTQLCPQCKTRY 86 (1015)
Q Consensus 31 ~~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeye-r~eG~~~Cp~Ckt~y 86 (1015)
..+...|.+|++. -..+++..+-|..|.-..=..||.-. .-+|.=.||.|...-
T Consensus 22 ~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 3466799999964 22456789999999887778898643 447889999997653
No 118
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=29.57 E-value=26 Score=35.83 Aligned_cols=54 Identities=20% Similarity=0.445 Sum_probs=36.0
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHH-----HHh-----hCCCCCCCCcccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEY-----ERR-----EGTQLCPQCKTRY 86 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyey-----er~-----eG~~~Cp~Ckt~y 86 (1015)
+|+.|.+|+..-.-++.+...+.|..|.-=+=..|-.. |.- +..=.||.|...-
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 47899999876555444567999999986664455422 221 1357999998653
No 119
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=29.31 E-value=32 Score=34.60 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=16.5
Q ss_pred ccchhhhHHHHhhCCC-CCCCCccccc
Q 039678 62 PVCRPCYEYERREGTQ-LCPQCKTRYK 87 (1015)
Q Consensus 62 pvCr~Cyeyer~eG~~-~Cp~Ckt~yk 87 (1015)
+.|+.||.. +-+.+ .|..|+++..
T Consensus 56 ~yC~~cy~~--~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 56 ILCRNDYIR--LFGNSGACSACGQSIP 80 (188)
T ss_dssp EECHHHHHH--HHSCCEECTTTCCEEC
T ss_pred ccccccccc--ccccCCccccCCCccc
Confidence 568999832 33443 7999998763
No 120
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.21 E-value=40 Score=30.11 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=33.1
Q ss_pred CccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhC-----CCCCCC--Cccc
Q 039678 34 GQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREG-----TQLCPQ--CKTR 85 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG-----~~~Cp~--Ckt~ 85 (1015)
.-.|.||.+- +. ++.+.- .|+.-.||.|-+--.+++ ...||. |+..
T Consensus 7 ~~~CPI~~~~-~~----dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEE-MK----KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSB-CS----SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCch-hc----CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3489999854 33 355542 689999999987665543 468999 8876
No 121
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.07 E-value=41 Score=36.42 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=36.1
Q ss_pred CCCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHhh-CCCCCCC--Cccccc
Q 039678 32 LDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERRE-GTQLCPQ--CKTRYK 87 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~e-G~~~Cp~--Ckt~yk 87 (1015)
...-.|.||.+-. -++.. ...||---||.|.+--.++ |...||. |+.++.
T Consensus 179 ~~el~CPIcl~~f-----~DPVt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPY-----EAPLI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBC-----SSEEE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcc-----cCCee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3445899999864 12333 3478989999999766554 5578999 999874
No 122
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=28.79 E-value=4.7 Score=28.90 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=14.7
Q ss_pred CCccchhhhHHHHhhCCCCCCCCcc
Q 039678 60 GFPVCRPCYEYERREGTQLCPQCKT 84 (1015)
Q Consensus 60 ~fpvCr~Cyeyer~eG~~~Cp~Ckt 84 (1015)
.|||||+|+.=-++ .++...|++
T Consensus 3 ~~~iC~~CC~cc~~--~~CG~cC~~ 25 (26)
T 1m4f_A 3 HFPICIFCCGCCHR--SKCGMCCKT 25 (26)
T ss_dssp SSCCCEEEECSSSS--SSEEEECCC
T ss_pred cCCccceecccCCC--CCcCCeeCC
Confidence 59999999933333 455555554
No 123
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=28.68 E-value=13 Score=44.80 Aligned_cols=45 Identities=7% Similarity=-0.107 Sum_probs=17.7
Q ss_pred cccccC-cccccc--CCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccc
Q 039678 36 VCEICG-DEIGKM--ANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTR 85 (1015)
Q Consensus 36 ~c~~c~-~~vg~~--~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~ 85 (1015)
.|..|| .++-.- ..|..|..| |+||-|+.-.-. +.....||+ +.+
T Consensus 574 ~CP~Cg~g~l~~r~~k~G~~f~gC--s~yp~C~f~~~~--~p~~~~Cp~-~~~ 621 (633)
T 2gai_A 574 FYLKCECGKTRSVKNDEIAVIDDG--KIFLGRKDSESG--SPDGRSVEG-KGN 621 (633)
T ss_dssp EEEECSSSCCEECCTTSBCEEETT--EEEC-----------------------
T ss_pred cCcccCCCcceeecccCCCeEEeC--CCCcCCCCeecC--CccCCcCCC-CCe
Confidence 399998 664432 367789999 566666644322 223478998 644
No 124
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=28.58 E-value=16 Score=37.80 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=24.4
Q ss_pred ccccccCcccc----ccCCCCe-eeccCCCCCccchhhhH
Q 039678 35 QVCEICGDEIG----KMANGDL-FLACEECGFPVCRPCYE 69 (1015)
Q Consensus 35 ~~c~~c~~~vg----~~~~g~~-f~ac~ec~fpvCr~Cye 69 (1015)
.+|..||.+-- ++++|+. .+-=+|=-.|+||-||.
T Consensus 152 aiC~~Cg~~A~~~~R~~~~~~~i~IGg~e~Y~~~CR~c~~ 191 (195)
T 1w4r_A 152 AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 191 (195)
T ss_dssp EECTTTCSEECEEEESSCCCSSCCCCCTTTEEEECHHHHT
T ss_pred eEecccCCeeeeEEEEcCCCCEEEECCCCcEEEccHHHhh
Confidence 48999998732 2234553 44456778999999994
No 125
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=27.40 E-value=15 Score=34.91 Aligned_cols=53 Identities=19% Similarity=0.392 Sum_probs=0.4
Q ss_pred CccccccCccccccC-----------CCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 34 GQVCEICGDEIGKMA-----------NGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 34 ~~~c~~c~~~vg~~~-----------~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
...|.||-+++.... .++.-+.-..|+-.-|+.|-.-=. ..+..||-|+.+++
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl-~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH-HcCCcCCCCCCeee
Confidence 468999998875421 222233333678888999984333 33789999999864
No 126
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=27.38 E-value=21 Score=35.63 Aligned_cols=35 Identities=29% Similarity=0.619 Sum_probs=25.0
Q ss_pred ccccccC-cccc----ccCCCC-eeeccCCCCCccchhhhH
Q 039678 35 QVCEICG-DEIG----KMANGD-LFLACEECGFPVCRPCYE 69 (1015)
Q Consensus 35 ~~c~~c~-~~vg----~~~~g~-~f~ac~ec~fpvCr~Cye 69 (1015)
.+|..|| .+.- ++.+|+ .++--+|=--|+||.||.
T Consensus 138 ~ic~~cg~~~a~~~~r~~~~~~~~~ig~~~~Y~~~cr~~~~ 178 (184)
T 2orw_A 138 AVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYN 178 (184)
T ss_dssp BCCTTTCCSCBCEEEECSSCSCSCCCCSTTTEEEECHHHHH
T ss_pred eecCCCCCeeceeEEEEcCCCCEEEECCCCcEEEccHHHHh
Confidence 4898999 5532 223555 366777888999999994
No 127
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.23 E-value=67 Score=28.20 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=23.2
Q ss_pred CCCCCCCCCccccccCccccc----cCCCCeee----ccCCCCCc
Q 039678 26 PKPWKSLDGQVCEICGDEIGK----MANGDLFL----ACEECGFP 62 (1015)
Q Consensus 26 ~~~~~~~~~~~c~~c~~~vg~----~~~g~~f~----ac~ec~fp 62 (1015)
.++.+......|..|+..|.- .+.|..+- .|.+|.=+
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~ 51 (91)
T 2d8y_A 7 GMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNK 51 (91)
T ss_dssp SSCSCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCB
T ss_pred CCccCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCC
Confidence 455555677899999998853 34566542 35566433
No 128
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.17 E-value=4.9 Score=35.00 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=24.5
Q ss_pred HHHHhhCCCCCCCCccccccccCCCCcCCCCC
Q 039678 69 EYERREGTQLCPQCKTRYKRIKGSPRVEGDAD 100 (1015)
Q Consensus 69 eyer~eG~~~Cp~Ckt~ykr~kgsp~v~gd~~ 100 (1015)
+|.+.+|.-.|+.|+..|--..|-|..--||.
T Consensus 19 ~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ea 50 (69)
T 2pk7_A 19 KLSADKTELISKGAGLAYPIRDGIPVMLESEA 50 (69)
T ss_dssp EECTTSSEEEETTTTEEEEEETTEECCCGGGC
T ss_pred eEeCCCCEEEcCCCCcEecCcCCeeeeChhhc
Confidence 34445677899999999999888887666643
No 129
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=25.62 E-value=45 Score=27.83 Aligned_cols=47 Identities=30% Similarity=0.724 Sum_probs=34.7
Q ss_pred CCCccccccCccccccCCCCeeeccCCCCCccchhhhHH---HHhhCCCCCCCCccc
Q 039678 32 LDGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEY---ERREGTQLCPQCKTR 85 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyey---er~eG~~~Cp~Ckt~ 85 (1015)
.+...|.+|++ |...+.|..|.-..=..|..- +.-+|.=.||.|..+
T Consensus 7 ~~~~~C~vC~~-------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCC-------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 35668999996 345788999977777778762 234788899999754
No 130
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.48 E-value=40 Score=31.34 Aligned_cols=43 Identities=26% Similarity=0.773 Sum_probs=25.6
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhHHHHhhCCCCCCCCccccc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERREGTQLCPQCKTRYK 87 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~eG~~~Cp~Ckt~yk 87 (1015)
.|..|+..+. |+.|.. .=+-|.|++||.. +- ...|..|+++-.
T Consensus 32 ~C~~C~~~L~----~~~f~~--~~g~~yC~~cy~~--~~-~~~C~~C~~~I~ 74 (126)
T 2xqn_T 32 CCFDCDSILA----GEIYVM--VNDKPVCKPCYVK--NH-AVVCQGCHNAID 74 (126)
T ss_dssp BCTTTCCBCT----TSEEEE--ETTEEEEHHHHHH--HS-CCBCTTTCSBCC
T ss_pred CcCCCCCCCC----cCEEEe--ECCEEechHHhCc--Cc-CccCcccCCcCC
Confidence 5555665542 223322 1245789999942 23 378999999763
No 131
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=24.91 E-value=62 Score=26.95 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=6.8
Q ss_pred hCCCCCCCCcccc
Q 039678 74 EGTQLCPQCKTRY 86 (1015)
Q Consensus 74 eG~~~Cp~Ckt~y 86 (1015)
.|.-+|..|+.-|
T Consensus 28 ~ge~vC~~CGlVl 40 (58)
T 1dl6_A 28 AGDMICPECGLVV 40 (58)
T ss_dssp SCCEECTTTCCEE
T ss_pred CCeEEeCCCCCEE
Confidence 3445555555555
No 132
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=24.77 E-value=22 Score=43.17 Aligned_cols=55 Identities=35% Similarity=0.858 Sum_probs=40.9
Q ss_pred CCCccccccCccccccCC---CCeeeccCCCC--------------------Cccchhhh-HHH----Hh--hCCCCCCC
Q 039678 32 LDGQVCEICGDEIGKMAN---GDLFLACEECG--------------------FPVCRPCY-EYE----RR--EGTQLCPQ 81 (1015)
Q Consensus 32 ~~~~~c~~c~~~vg~~~~---g~~f~ac~ec~--------------------fpvCr~Cy-eye----r~--eG~~~Cp~ 81 (1015)
.+-.+|.-|=.++---.| +-+|+-|..|| ||.|..|. ||+ || ----+||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 456699999988743222 45899999994 99999997 455 44 12259999
Q ss_pred Ccccc
Q 039678 82 CKTRY 86 (1015)
Q Consensus 82 Ckt~y 86 (1015)
|+=++
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 99887
No 133
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=24.37 E-value=35 Score=27.14 Aligned_cols=45 Identities=29% Similarity=0.818 Sum_probs=31.6
Q ss_pred cccccCccccccCCCCeeeccCCCCCccchhhhH---HHHhhCCCCCCCCcc
Q 039678 36 VCEICGDEIGKMANGDLFLACEECGFPVCRPCYE---YERREGTQLCPQCKT 84 (1015)
Q Consensus 36 ~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cye---yer~eG~~~Cp~Ckt 84 (1015)
.|.+|++. .+++..+.|..|.-..=..|.. .+.-+|.=.||.|..
T Consensus 2 ~C~vC~~~----~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK----GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS----SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC----CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 59999875 3456789999887554556763 223467788999964
No 134
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.77 E-value=29 Score=28.97 Aligned_cols=53 Identities=19% Similarity=0.568 Sum_probs=33.8
Q ss_pred CCccccccCccccccCCCCeeeccCCCCCccchhhhHHHHh----hCCCCCCCCcccccc
Q 039678 33 DGQVCEICGDEIGKMANGDLFLACEECGFPVCRPCYEYERR----EGTQLCPQCKTRYKR 88 (1015)
Q Consensus 33 ~~~~c~~c~~~vg~~~~g~~f~ac~ec~fpvCr~Cyeyer~----eG~~~Cp~Ckt~ykr 88 (1015)
.+..|.+|+..- .+++..|+|..|.-=.=-.|.....+ .+.-.||.|..+..|
T Consensus 5 e~~~C~~C~~~~---~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 5 SSGQCGACGESY---AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp SCCCCSSSCCCC---CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCcc---CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 456899998752 24678899988854333344443322 256889999875544
No 135
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=23.69 E-value=8.8 Score=40.43 Aligned_cols=36 Identities=28% Similarity=0.605 Sum_probs=24.0
Q ss_pred ccccccCcccccc---CCC-------Ce-eeccCCCCCccchhhhHH
Q 039678 35 QVCEICGDEIGKM---ANG-------DL-FLACEECGFPVCRPCYEY 70 (1015)
Q Consensus 35 ~~c~~c~~~vg~~---~~g-------~~-f~ac~ec~fpvCr~Cyey 70 (1015)
.+|..||.+.-.+ .+| +. .+-=+|=-.|+||-||.-
T Consensus 163 aiC~~CG~~A~~~~R~~~g~~~~~~g~~i~IGg~e~Y~~~CR~cy~~ 209 (219)
T 3e2i_A 163 AVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIV 209 (219)
T ss_dssp EECTTTCSEECEEEEEETTEECBTTCCSCCSSCCEEEEEECGGGCCC
T ss_pred eEccCCCCcceEEEEEECCcccccCCCEEEECCCccEEEcCHHhhcC
Confidence 4899999883322 344 32 344467788999999943
No 136
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.40 E-value=66 Score=27.63 Aligned_cols=38 Identities=21% Similarity=0.539 Sum_probs=23.4
Q ss_pred CCCCCCccccccCcccc---ccCCCCee----eccCCCCCccchh
Q 039678 29 WKSLDGQVCEICGDEIG---KMANGDLF----LACEECGFPVCRP 66 (1015)
Q Consensus 29 ~~~~~~~~c~~c~~~vg---~~~~g~~f----~ac~ec~fpvCr~ 66 (1015)
........|..|+..|. +.+.|..+ .-|.+|.-++=..
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~ 54 (79)
T 2cor_A 10 ARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD 54 (79)
T ss_dssp CCCCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT
T ss_pred hhccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC
Confidence 34456679999999876 22345543 2477776555444
No 137
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.73 E-value=91 Score=25.82 Aligned_cols=9 Identities=33% Similarity=0.877 Sum_probs=5.9
Q ss_pred CccchhhhH
Q 039678 61 FPVCRPCYE 69 (1015)
Q Consensus 61 fpvCr~Cye 69 (1015)
-+.|++||+
T Consensus 54 ~~yC~~cy~ 62 (72)
T 1x61_A 54 RAYCEGCYV 62 (72)
T ss_dssp CEEEHHHHH
T ss_pred eEECHHHHH
Confidence 356777774
No 138
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=22.26 E-value=39 Score=29.40 Aligned_cols=42 Identities=31% Similarity=0.820 Sum_probs=29.8
Q ss_pred ccccccCccccccCCCCeeeccCCCCCc-cchhhhHHHHhhCCCCCCCCcccccc
Q 039678 35 QVCEICGDEIGKMANGDLFLACEECGFP-VCRPCYEYERREGTQLCPQCKTRYKR 88 (1015)
Q Consensus 35 ~~c~~c~~~vg~~~~g~~f~ac~ec~fp-vCr~Cyeyer~eG~~~Cp~Ckt~ykr 88 (1015)
..|.||-+..- --.|++| +-- .|+.|..- -+.||-|+.+...
T Consensus 19 ~~C~IC~~~~~----~~v~~pC---gH~~~C~~C~~~-----~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEI----NSTFCPC---GHTVCCESCAAQ-----LQSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBC----CEEEETT---CBCCBCHHHHTT-----CSBCTTTCCBCCE
T ss_pred CEeEEeCcccC----cEEEECC---CCHHHHHHHHHh-----cCcCCCCCchhhC
Confidence 47999987632 2246665 555 79999852 2599999998864
No 139
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.92 E-value=76 Score=31.16 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=16.0
Q ss_pred CCccchhhhHHHHhhCCCCCCCCcccc
Q 039678 60 GFPVCRPCYEYERREGTQLCPQCKTRY 86 (1015)
Q Consensus 60 ~fpvCr~Cyeyer~eG~~~Cp~Ckt~y 86 (1015)
+-+.|+.||.. +-+ ..|..|+++-
T Consensus 52 g~~yC~~~y~~--~f~-~~C~~C~~~I 75 (169)
T 2rgt_A 52 ESVYCKDDFFK--RFG-TKCAACQLGI 75 (169)
T ss_dssp SCEECHHHHHH--HHS-CBCTTTCCBC
T ss_pred Ceeeecccccc--ccc-cccccccccc
Confidence 34678999843 233 6789998765
No 140
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.11 E-value=45 Score=28.54 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=7.7
Q ss_pred CccccccCcccc
Q 039678 34 GQVCEICGDEIG 45 (1015)
Q Consensus 34 ~~~c~~c~~~vg 45 (1015)
...|..|+..|.
T Consensus 7 ~~~C~~C~~~I~ 18 (81)
T 1a7i_A 7 GNKCGACGRTVY 18 (81)
T ss_dssp -CBCSSSCCBCS
T ss_pred CCcCcCcCcccc
Confidence 456777777764
Done!