BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039679
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54QA6|TRM11_DICDI tRNA (guanine(10)-N2)-methyltransferase homolog OS=Dictyostelium
discoideum GN=trmt11 PE=3 SV=1
Length = 507
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 5/137 (3%)
Query: 75 ADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKL-LKGVLDPYTVPDDKRVGHIPSTAPY 133
DN+ PPWR + +FD+II DPPYG+RA RK+ K VP+ R HIP Y
Sbjct: 292 CDNSCPPWR--VNSMFDSIITDPPYGIRAGARKIGFKENRKFVPVPEGLRRDHIPQCIDY 349
Query: 134 CLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLV-ASSEQILSSRY 192
+ + + DLL+LA + L++GGRLVY+ P D P H C +L+ AS QIL++R+
Sbjct: 350 SVPDVMADLLELAAKTLIVGGRLVYWLPT-TPDYKETDLPRHPCLRLITASCLQILTNRW 408
Query: 193 SRVLLTMVKIGLYTEEI 209
R L+TM KI Y + I
Sbjct: 409 GRRLVTMEKIIEYNDSI 425
>sp|Q6NS23|TRM11_XENLA tRNA (guanine(10)-N2)-methyltransferase homolog OS=Xenopus laevis
GN=trmt11 PE=2 SV=1
Length = 478
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 84/165 (50%), Gaps = 16/165 (9%)
Query: 75 ADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKL--LKGVLDPYTVPDDKRVGHIPSTAP 132
+D + P WR +FDAII DPPYG+R S RK K ++ P+ H+P
Sbjct: 293 SDASKPVWRKA--PLFDAIITDPPYGIRESTRKTGTQKEIIKTELFPES----HVPVQLN 346
Query: 133 YCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRY 192
Y LS+ DL A LV GGRLVY+ PV R + T P H C KL+++ EQ+LSS
Sbjct: 347 YHLSDIFSDLFAFASEFLVTGGRLVYWLPVYRPEYTEEVLPRHPCLKLISNCEQMLSSHT 406
Query: 193 SRVLLTMVKIGLYTE--------EIAETARRNHLEFRENHLKWLE 229
SR L+TM K+ + E E + H FRE + L+
Sbjct: 407 SRRLITMEKVKEFEEKYQYAHLGEGQNLPYKGHNSFREKYFSGLK 451
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 3 YLCVFFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62
YL + ++R PE++SL L+G + + + H SPF +NLPSE++AR +
Sbjct: 14 YLLLLAQENCEFRLPEIKSLLSLYGGH----FNNLQDEHGKSPFCILNLPSEEMARKLMK 69
Query: 63 R 63
R
Sbjct: 70 R 70
>sp|Q6YJI5|TRM11_CHICK tRNA (guanine(10)-N2)-methyltransferase homolog OS=Gallus gallus
GN=TRMT11 PE=2 SV=1
Length = 461
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 85/159 (53%), Gaps = 11/159 (6%)
Query: 75 ADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYC 134
+D++ P WR G +FDAII DPPYG+R + R+ + + HI ++ Y
Sbjct: 290 SDSSRPIWRKGT--LFDAIITDPPYGIREATRRT-GSQKESVKSSERSTENHIIISSSYH 346
Query: 135 LSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSR 194
LS+ DLL A LVMGGRLVY+ P+ R + T P H C KL+++ EQ+LSS SR
Sbjct: 347 LSDIFFDLLKFAAEYLVMGGRLVYWLPIYRPEYTEEIVPRHPCLKLISNCEQMLSSHTSR 406
Query: 195 VLLTMVKIGLYTEEIAET--------ARRNHLEFRENHL 225
L+TM K+ + ++ + + H FRE +
Sbjct: 407 RLITMEKVKEFKDQDQNSYLSDGQYMPYKGHNSFREKYF 445
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 12 LDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIANR 63
L++R PE+ SL L G + + ++ +SPF +N+PSE++AR + R
Sbjct: 20 LEFRLPEITSLLSLCGGQFSSQQEVC----VNSPFWILNIPSEEMARGLMRR 67
>sp|Q7Z4G4|TRM11_HUMAN tRNA (guanine(10)-N2)-methyltransferase homolog OS=Homo sapiens
GN=TRMT11 PE=1 SV=1
Length = 463
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 12/134 (8%)
Query: 75 ADNNLPPWRPGLKEVFDAIICDPPYGVRASGRK------LLKGVLDPYTVPDDKRVGHIP 128
+D + P WR G FDAII DPPYG+R S R+ + KG+ P+ H+P
Sbjct: 289 SDASKPSWRKGT--YFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPES----HVP 342
Query: 129 STAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQIL 188
+ Y LS+ DLL+ A LV+GGRLVY+ PV + T P H C +LV++ EQ L
Sbjct: 343 VSLSYHLSDMFLDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVSNCEQKL 402
Query: 189 SSRYSRVLLTMVKI 202
SS SR L+TM K+
Sbjct: 403 SSHTSRRLITMEKV 416
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 3 YLCVFFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62
YL + L++R PE++SL LFG ++ + + SPF +++PSEDIAR++
Sbjct: 10 YLLLMAQEHLEFRLPEIKSLLLLFGG----QFASSQETYGKSPFWILSIPSEDIARNLMK 65
Query: 63 R 63
R
Sbjct: 66 R 66
>sp|Q5R962|TRM11_PONAB tRNA (guanine(10)-N2)-methyltransferase homolog OS=Pongo abelii
GN=TRMT11 PE=2 SV=1
Length = 463
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 76/134 (56%), Gaps = 12/134 (8%)
Query: 75 ADNNLPPWRPGLKEVFDAIICDPPYGVRASGRK------LLKGVLDPYTVPDDKRVGHIP 128
+D + P WR G FDAII DPPYG+R S R+ + KG+ P+ H+P
Sbjct: 289 SDASKPSWRKGT--YFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPES----HVP 342
Query: 129 STAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQIL 188
+ Y LS+ DLL+ A LV+GGRLVY+ PV + T P H C +L+++ EQ L
Sbjct: 343 VSLSYHLSDMFLDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELISNCEQKL 402
Query: 189 SSRYSRVLLTMVKI 202
SS SR L+TM K+
Sbjct: 403 SSHTSRRLITMEKV 416
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 3 YLCVFFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62
YL + L++R PE++SL LFG ++ + SPF +++PSEDIAR++
Sbjct: 10 YLLLMAQEHLEFRLPEIKSLLSLFGG----QFGSSQETFGKSPFWILSIPSEDIARNLMK 65
Query: 63 R 63
R
Sbjct: 66 R 66
>sp|Q05B63|TRM11_BOVIN tRNA (guanine(10)-N2)-methyltransferase homolog OS=Bos taurus
GN=TRMT11 PE=2 SV=1
Length = 460
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 75 ADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYC 134
+D + P WR G FDAII DPPYG+R S R+ P + H+P + Y
Sbjct: 289 SDASKPSWRKGT--YFDAIITDPPYGIRESTRRTGSQKEIPKGIEKCPE-SHVPVSLSYH 345
Query: 135 LSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSR 194
LS+ DLL+ + LV+GGRLVY+ PV + T P H C KL+++ EQ LSS SR
Sbjct: 346 LSDMFFDLLNFSAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLKLISNCEQKLSSHTSR 405
Query: 195 VLLTMVKI 202
L+TM K+
Sbjct: 406 RLITMEKV 413
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 3 YLCVFFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62
YL + L++R PE++SL LFG ++ + + SPF +++PSEDIAR++
Sbjct: 10 YLLLMAQEHLEFRLPEIKSLLSLFGG----QFISSQETYGKSPFWILSIPSEDIARNLMK 65
Query: 63 R 63
R
Sbjct: 66 R 66
>sp|Q7TNK6|TRM11_RAT tRNA (guanine(10)-N2)-methyltransferase homolog OS=Rattus
norvegicus GN=Trmt11 PE=2 SV=1
Length = 463
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 77/134 (57%), Gaps = 15/134 (11%)
Query: 75 ADNNLPPWRPGLKEVFDAIICDPPYGVRASGRK------LLKGVLDPYTVPDDKRVGHIP 128
+D + P WR G FDAII DPPYG+R S R+ +LKG+ P+ H+P
Sbjct: 289 SDASKPSWRKGT--YFDAIITDPPYGIRESTRRTGSQKEILKGI---EKCPES----HVP 339
Query: 129 STAPYCLSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQIL 188
+ Y LS+ DL++ A LV+GGRLVY+ PV + T P H C +LV++ EQ L
Sbjct: 340 VSLTYHLSDMFLDLINFAAETLVLGGRLVYWLPVYTPEYTEKMVPWHPCLRLVSNCEQKL 399
Query: 189 SSRYSRVLLTMVKI 202
SS +R L+TM K+
Sbjct: 400 SSHTARRLITMEKV 413
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 3 YLCVFFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62
YL + L++R PE++SL + G ++ + + SPF +N+PSEDIAR++
Sbjct: 10 YLLLMAQEHLEFRLPEIKSLLSVIGG----QFTNSQETYGKSPFWILNIPSEDIARNLMK 65
Query: 63 R 63
R
Sbjct: 66 R 66
>sp|Q9CWH5|TRM11_MOUSE tRNA (guanine(10)-N2)-methyltransferase homolog OS=Mus musculus
GN=Trmt11 PE=2 SV=1
Length = 460
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 75 ADNNLPPWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYC 134
+D + P WR G FDAII DPPYG+R S R+ P + H+P + Y
Sbjct: 289 SDASKPSWRKGT--YFDAIITDPPYGIRESTRRSGSQKDIPKGIEKCPE-SHVPVSLSYH 345
Query: 135 LSECVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSR 194
LS+ DLL+ A LV+GGRLVY+ PV + T P H C +L+++ EQ LSS +R
Sbjct: 346 LSDMFFDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLRLISNCEQKLSSHTAR 405
Query: 195 VLLTMVKI 202
L+TM K+
Sbjct: 406 RLITMEKV 413
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 3 YLCVFFHRLLDYRKPEVESLAYLFGVNDALEWKLPKHHHPDSPFHFVNLPSEDIARSIAN 62
YL + L++R PE++SL + G ++ + + SPF +N+PSEDIAR++
Sbjct: 10 YLLLMAQEHLEFRLPEIKSLLSVIGG----QFTNSQETYGKSPFWILNIPSEDIARNLMK 65
Query: 63 R 63
R
Sbjct: 66 R 66
>sp|O94636|TRM11_SCHPO tRNA (guanine(10)-N2)-methyltransferase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trm11 PE=3 SV=2
Length = 469
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 81 PWRPGLKEVFDAIICDPPYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVH 140
P R L + DAI+CDPPYGVRA +K+ K P H P Y +S+ V+
Sbjct: 305 PLRKNL--LLDAIVCDPPYGVRAGAKKIAKCSQRP-PKESSSTGNHYPKLEQYQISDMVY 361
Query: 141 DLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLLTMV 200
D++ A LV GGRLV + P + E+ + P H L+ +S Q + +SR LLT
Sbjct: 362 DIICFASDRLVDGGRLVLWLPTITEEYGIDDIPSHPYLSLIYNSIQPF-THWSRRLLTFQ 420
Query: 201 KI 202
++
Sbjct: 421 RL 422
>sp|Q12463|TRM11_YEAST tRNA (guanine(10)-N2)-methyltransferase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRM11 PE=1 SV=1
Length = 433
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 89 VFDAIICDPPYGVRASGRKLLKGVLDP--------YTVPDDK---RVGHIPSTAPYCLSE 137
V D I+CDPPYG+R S + L G DP + +K R +IP+ PY L
Sbjct: 284 VIDTILCDPPYGIRESIKVL--GAKDPERFLGKEDMEIDGEKAYLRRDYIPTKKPYALDS 341
Query: 138 CVHDLLDLAGRILVMGGRLVYFYPVLREDSTRNPFPEHLCFKLVASSEQILSSRYSRVLL 197
+ DLL + L +GGRL ++ P + + P H +L + Q + R+L+
Sbjct: 342 LLDDLLQYSSERLPIGGRLAFWMPTANDANIETIVPMHENLELKYNCVQEFNKWSRRLLV 401
Query: 198 TMVKIGLYTEEIAETARRNHLEFRENHL 225
+ + + +R+ FRE +
Sbjct: 402 YINRGSTFNGSSNHGIKRSKDNFRERYF 429
>sp|P45832|PRMC_MYCLE Release factor glutamine methyltransferase OS=Mycobacterium leprae
(strain TN) GN=prmC PE=3 SV=2
Length = 288
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 12/134 (8%)
Query: 38 KHHHPDSPFHFVNLPSEDIARSIANRIWITNAYWFAKADNNLPPWRPGLKEVFDAIICDP 97
HH P + + + D A A R A +AD P P L D + +P
Sbjct: 130 AHHRPAA--RVIGIDDSDSALDYARRNAEGTAVECVRADVTTPALLPELDGCVDLFVANP 187
Query: 98 PYGVRASGRKLLKGVLDPYTVPDDKRVGHIPSTAPYCLSECVHDLLDLAGRILVMGGRLV 157
PY +++ +L+P D R H P ++ D++ LAGR L GG
Sbjct: 188 PY---VPDDPVVQSILEPEVTQYDPR--HAVFGGPDGMA-LTADIVGLAGRWLRPGG--- 238
Query: 158 YFYPVLREDSTRNP 171
+ V +DST P
Sbjct: 239 -LFAVEHDDSTSVP 251
>sp|Q2YHF2|POLG_DEN4H Genome polyprotein OS=Dengue virus type 4 (strain Thailand/0476/1997)
PE=3 SV=1
Length = 3387
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 45 PFHFVNLPSEDIARSIANRIWITNAYWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRAS 104
PF N P EDI R I R W T W + P +K D C +R S
Sbjct: 1798 PFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANC-----LRKS 1852
Query: 105 GRKLLK 110
G+K+++
Sbjct: 1853 GKKVIQ 1858
>sp|Q2YHF0|POLG_DEN4T Genome polyprotein OS=Dengue virus type 4 (strain Thailand/0348/1991)
PE=1 SV=1
Length = 3387
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 45 PFHFVNLPSEDIARSIANRIWITNAYWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRAS 104
PF N P EDI R I R W T W + P +K D C +R S
Sbjct: 1798 PFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANC-----LRKS 1852
Query: 105 GRKLLK 110
G+K+++
Sbjct: 1853 GKKVIQ 1858
>sp|Q5UCB8|POLG_DEN4S Genome polyprotein OS=Dengue virus type 4 (strain
Singapore/8976/1995) PE=3 SV=1
Length = 3387
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 45 PFHFVNLPSEDIARSIANRIWITNAYWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRAS 104
PF N P EDI R I R W T W + P +K D C +R S
Sbjct: 1798 PFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANC-----LRKS 1852
Query: 105 GRKLLK 110
G+K+++
Sbjct: 1853 GKKVIQ 1858
>sp|P09866|POLG_DEN4D Genome polyprotein OS=Dengue virus type 4 (strain
Dominica/814669/1981) PE=1 SV=2
Length = 3387
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 45 PFHFVNLPSEDIARSIANRIWITNAYWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRAS 104
PF N P EDI R I R W T W + P +K D C +R S
Sbjct: 1798 PFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANC-----LRKS 1852
Query: 105 GRKLLK 110
G+K+++
Sbjct: 1853 GKKVIQ 1858
>sp|Q58HT7|POLG_DEN4P Genome polyprotein OS=Dengue virus type 4 (strain
Philippines/H241/1956) PE=1 SV=1
Length = 3387
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 45 PFHFVNLPSEDIARSIANRIWITNAYWFAKADNNLPPWRPGLKEVFDAIICDPPYGVRAS 104
PF N P EDI R I R W T W + P +K D C +R S
Sbjct: 1798 PFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANC-----LRKS 1852
Query: 105 GRKLLK 110
G+K+++
Sbjct: 1853 GKKVIQ 1858
>sp|P14385|MTTA_THEAQ Modification methylase TaqI OS=Thermus aquaticus GN=taqIM PE=1 SV=3
Length = 421
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 22/98 (22%)
Query: 78 NLPPWRPGL---------KEVFDAIICDPPYGVRASGRK----LLKGVLDPYTVPDDKRV 124
+LPPW G+ E FD I+ +PPYG+ K + K V D Y
Sbjct: 78 DLPPWAEGILADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWK 137
Query: 125 GHIPSTAPYCLSECVHDLLDLAGRILVMGGRLVYFYPV 162
G Y L L+ A R+L GG LV+ P
Sbjct: 138 GK------YNLYGA---FLEKAVRLLKPGGVLVFVVPA 166
>sp|Q8QL52|POLS_SLDV Structural polyprotein OS=Sleeping disease virus PE=3 SV=1
Length = 1322
Score = 30.4 bits (67), Expect = 9.8, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 21 SLAYLFGVNDALEWKLPKH---HHPDSPFHFVNLPSEDIARSIANRIWITNAYWFAKADN 77
S+ Y G DA W+L H HHP+ + FV + +A + N ++ N
Sbjct: 709 SVRYASGDADAYPWELLVHHIKHHPEYAWAFVGVACGLLAVAACMFACACNRVRYSLLAN 768
Query: 78 NLPPWRPGLKEVFDAIICDPPYGVRA 103
P P L + A+ C P G RA
Sbjct: 769 TFNPNPPPLTALTAALCCIP--GARA 792
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,277,325
Number of Sequences: 539616
Number of extensions: 3917943
Number of successful extensions: 7871
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7837
Number of HSP's gapped (non-prelim): 26
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)